Query 005046
Match_columns 716
No_of_seqs 216 out of 429
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 17:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 5E-238 1E-242 1946.6 50.6 657 5-716 39-714 (1018)
2 COG0189 RimK Glutathione synth 100.0 2.7E-31 5.9E-36 280.9 14.0 255 12-296 34-295 (318)
3 PF08443 RimK: RimK-like ATP-g 100.0 2.3E-29 5E-34 245.8 6.9 174 94-296 1-175 (190)
4 PLN02941 inositol-tetrakisphos 99.9 1.4E-25 3.1E-30 238.5 20.2 267 4-310 19-324 (328)
5 PRK10446 ribosomal protein S6 99.9 9E-26 2E-30 234.1 18.0 250 8-291 2-266 (300)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 2.8E-24 6.1E-29 215.7 15.0 249 9-290 2-256 (277)
7 TIGR02144 LysX_arch Lysine bio 99.9 1.3E-23 2.8E-28 213.2 15.8 238 22-290 11-254 (280)
8 PRK05246 glutathione synthetas 99.9 6.2E-24 1.3E-28 222.9 11.5 199 52-289 75-285 (316)
9 TIGR01380 glut_syn glutathione 99.9 1.3E-23 2.7E-28 220.8 11.3 199 52-289 74-284 (312)
10 PRK12458 glutathione synthetas 99.9 1E-22 2.3E-27 216.7 11.6 200 52-289 75-297 (338)
11 TIGR02291 rimK_rel_E_lig alpha 99.8 2.7E-19 5.9E-24 190.0 12.0 185 84-292 25-272 (317)
12 TIGR03103 trio_acet_GNAT GNAT- 99.8 4.5E-19 9.8E-24 199.8 9.7 180 84-294 285-526 (547)
13 PRK01372 ddl D-alanine--D-alan 99.8 4.8E-17 1E-21 167.7 20.1 247 6-290 4-270 (304)
14 PRK14016 cyanophycin synthetas 99.7 9.3E-18 2E-22 194.7 10.1 182 84-295 202-452 (727)
15 TIGR02068 cya_phycin_syn cyano 99.7 1.6E-17 3.4E-22 195.9 9.8 177 85-291 202-447 (864)
16 PRK02471 bifunctional glutamat 99.7 2.6E-16 5.7E-21 183.3 10.9 184 83-292 475-728 (752)
17 PRK14571 D-alanyl-alanine synt 99.6 2.5E-14 5.4E-19 148.4 18.3 247 18-302 16-277 (299)
18 TIGR01205 D_ala_D_alaTIGR D-al 99.6 2.8E-14 6E-19 147.8 15.8 209 55-289 62-284 (315)
19 TIGR01435 glu_cys_lig_rel glut 99.6 7.4E-15 1.6E-19 170.4 10.3 179 84-290 463-712 (737)
20 PF02955 GSH-S_ATP: Prokaryoti 99.5 7.2E-15 1.6E-19 144.6 5.4 145 111-290 12-162 (173)
21 PRK14569 D-alanyl-alanine synt 99.5 3.5E-13 7.7E-18 140.6 15.3 245 6-290 3-265 (296)
22 PRK12767 carbamoyl phosphate s 99.4 9.9E-13 2.2E-17 136.7 12.4 194 56-288 69-268 (326)
23 PRK01966 ddl D-alanyl-alanine 99.4 1.9E-12 4.1E-17 137.3 14.0 206 56-289 81-300 (333)
24 PRK06849 hypothetical protein; 99.4 2.4E-12 5.2E-17 138.3 14.1 194 57-287 77-273 (389)
25 PF00328 His_Phos_2: Histidine 99.4 5.9E-13 1.3E-17 136.2 8.5 115 355-547 1-121 (347)
26 TIGR01142 purT phosphoribosylg 99.4 1.4E-12 3E-17 138.8 11.5 197 57-287 63-269 (380)
27 PRK14572 D-alanyl-alanine synt 99.4 6.6E-12 1.4E-16 134.0 15.4 190 72-290 105-315 (347)
28 PRK14570 D-alanyl-alanine synt 99.4 1.6E-11 3.5E-16 132.7 18.5 209 56-290 87-316 (364)
29 PRK14568 vanB D-alanine--D-lac 99.3 2.4E-11 5.2E-16 129.4 17.2 200 56-289 90-309 (343)
30 PRK13790 phosphoribosylamine-- 99.3 1.1E-11 2.4E-16 134.0 12.0 193 69-288 38-248 (379)
31 PRK09288 purT phosphoribosylgl 99.2 6E-11 1.3E-15 126.9 11.4 198 56-288 75-283 (395)
32 TIGR01161 purK phosphoribosyla 99.2 1.6E-10 3.4E-15 122.8 14.0 192 57-288 61-263 (352)
33 PF05770 Ins134_P3_kin: Inosit 99.2 1.2E-10 2.7E-15 123.9 12.2 262 4-304 5-303 (307)
34 PF13535 ATP-grasp_4: ATP-gras 99.2 1.7E-11 3.7E-16 115.6 5.1 168 93-288 1-177 (184)
35 PRK00885 phosphoribosylamine-- 99.2 1.4E-10 3.1E-15 126.1 11.3 207 57-288 63-286 (420)
36 PRK07206 hypothetical protein; 99.2 5.2E-10 1.1E-14 120.8 15.5 208 56-287 70-285 (416)
37 PRK06019 phosphoribosylaminoim 99.1 1.7E-09 3.8E-14 116.5 14.6 196 56-289 63-266 (372)
38 PRK05294 carB carbamoyl phosph 99.1 3.5E-10 7.5E-15 136.9 10.1 198 56-288 629-839 (1066)
39 PRK05586 biotin carboxylase; V 99.0 5.6E-10 1.2E-14 122.8 9.9 203 55-288 73-291 (447)
40 PRK02186 argininosuccinate lya 99.0 9.4E-10 2E-14 130.9 12.1 203 51-288 65-275 (887)
41 PRK08462 biotin carboxylase; V 99.0 4E-10 8.7E-15 123.5 7.9 202 56-288 76-293 (445)
42 PRK07178 pyruvate carboxylase 99.0 1.1E-09 2.5E-14 121.6 10.6 203 56-288 73-290 (472)
43 PRK08591 acetyl-CoA carboxylas 99.0 6.1E-10 1.3E-14 122.0 8.1 205 56-288 74-291 (451)
44 PRK08463 acetyl-CoA carboxylas 99.0 9.8E-10 2.1E-14 122.4 9.5 205 56-288 73-291 (478)
45 TIGR00877 purD phosphoribosyla 99.0 1.8E-09 3.9E-14 117.2 11.2 204 57-288 65-288 (423)
46 PRK06111 acetyl-CoA carboxylas 99.0 2.6E-09 5.7E-14 116.6 12.2 209 57-289 75-292 (450)
47 PRK08654 pyruvate carboxylase 99.0 1.1E-09 2.4E-14 123.1 9.2 203 56-288 74-290 (499)
48 TIGR01369 CPSaseII_lrg carbamo 99.0 6.7E-09 1.4E-13 125.8 15.3 199 56-288 629-839 (1050)
49 PF02655 ATP-grasp_3: ATP-gras 99.0 9.5E-10 2.1E-14 105.7 6.4 149 94-288 1-156 (161)
50 PRK06395 phosphoribosylamine-- 98.9 3.8E-09 8.2E-14 116.8 10.6 205 57-288 66-291 (435)
51 PF14397 ATPgrasp_ST: Sugar-tr 98.9 4.3E-09 9.2E-14 110.7 9.8 187 86-289 16-257 (285)
52 TIGR00514 accC acetyl-CoA carb 98.9 3.7E-09 8E-14 116.4 8.3 200 56-288 74-291 (449)
53 PF15632 ATPgrasp_Ter: ATP-gra 98.9 1.8E-08 4E-13 108.4 12.6 198 56-288 66-279 (329)
54 TIGR01235 pyruv_carbox pyruvat 98.8 5.2E-09 1.1E-13 127.5 8.7 203 56-288 74-291 (1143)
55 PRK12815 carB carbamoyl phosph 98.8 1.4E-08 2.9E-13 123.4 11.8 196 56-288 630-837 (1068)
56 PRK14573 bifunctional D-alanyl 98.8 1E-07 2.2E-12 112.6 18.2 209 56-289 526-755 (809)
57 PLN02948 phosphoribosylaminoim 98.8 1.9E-08 4.2E-13 115.1 11.5 199 57-290 84-290 (577)
58 PLN02257 phosphoribosylamine-- 98.8 3.4E-08 7.4E-13 109.4 12.5 195 67-288 71-288 (434)
59 PRK12833 acetyl-CoA carboxylas 98.8 1.6E-08 3.5E-13 112.5 9.3 204 56-288 77-294 (467)
60 PF07478 Dala_Dala_lig_C: D-al 98.7 2.6E-08 5.6E-13 100.0 8.3 161 103-292 1-177 (203)
61 cd07061 HP_HAP_like Histidine 98.7 2.2E-08 4.7E-13 100.8 6.6 85 478-583 17-107 (242)
62 PRK05294 carB carbamoyl phosph 98.7 5.3E-08 1.2E-12 118.2 10.9 197 56-287 82-301 (1066)
63 COG1821 Predicted ATP-utilizin 98.7 8.1E-08 1.8E-12 100.1 10.5 152 72-289 94-255 (307)
64 PRK12999 pyruvate carboxylase; 98.7 5E-08 1.1E-12 119.2 9.8 201 56-288 78-295 (1146)
65 COG1181 DdlA D-alanine-D-alani 98.7 1.4E-07 3E-12 101.2 11.2 239 23-290 23-286 (317)
66 PLN02735 carbamoyl-phosphate s 98.6 2.2E-07 4.8E-12 113.4 14.2 198 56-288 649-874 (1102)
67 PLN02735 carbamoyl-phosphate s 98.6 1.6E-07 3.5E-12 114.6 11.8 197 56-287 98-318 (1102)
68 PF02750 Synapsin_C: Synapsin, 98.6 1.5E-07 3.2E-12 94.8 9.5 168 86-291 1-179 (203)
69 PRK06524 biotin carboxylase-li 98.6 7.8E-08 1.7E-12 108.3 8.3 184 73-287 118-320 (493)
70 TIGR01369 CPSaseII_lrg carbamo 98.6 2.1E-07 4.6E-12 113.0 11.0 196 56-288 81-300 (1050)
71 PRK13789 phosphoribosylamine-- 98.6 3.2E-07 7E-12 101.5 11.4 205 57-289 69-294 (426)
72 TIGR02712 urea_carbox urea car 98.5 2.8E-07 6E-12 113.3 8.3 203 56-288 73-290 (1201)
73 PRK12815 carB carbamoyl phosph 98.4 1.1E-06 2.4E-11 107.1 11.5 206 56-298 82-309 (1068)
74 PRK05784 phosphoribosylamine-- 98.4 1.4E-06 3.1E-11 98.2 11.3 204 57-288 70-308 (486)
75 PF14398 ATPgrasp_YheCD: YheC/ 98.2 4.3E-06 9.2E-11 87.2 9.1 193 79-293 6-236 (262)
76 COG0439 AccC Biotin carboxylas 98.0 1.8E-05 3.8E-10 88.8 8.2 201 56-287 74-290 (449)
77 COG2232 Predicted ATP-dependen 97.8 7.7E-05 1.7E-09 80.7 10.0 150 83-288 107-272 (389)
78 PRK13278 purP 5-formaminoimida 97.8 0.00016 3.5E-09 79.1 12.3 179 79-290 107-312 (358)
79 PF02786 CPSase_L_D2: Carbamoy 97.6 1.1E-05 2.4E-10 81.9 -0.1 165 96-289 1-179 (211)
80 PRK13277 5-formaminoimidazole- 97.4 0.00062 1.3E-08 74.9 9.3 163 95-288 125-317 (366)
81 COG0458 CarB Carbamoylphosphat 97.2 0.0017 3.8E-08 72.0 10.1 203 56-292 70-293 (400)
82 PF02222 ATP-grasp: ATP-grasp 97.1 0.002 4.4E-08 63.9 8.2 149 104-287 1-158 (172)
83 KOG3895 Synaptic vesicle prote 96.7 0.0036 7.8E-08 68.5 7.3 201 75-318 179-394 (488)
84 PF01071 GARS_A: Phosphoribosy 96.7 0.0014 3E-08 66.6 4.0 165 96-288 2-187 (194)
85 COG0027 PurT Formate-dependent 96.4 0.017 3.6E-07 62.9 9.7 182 73-287 90-282 (394)
86 COG0026 PurK Phosphoribosylami 95.9 0.041 8.9E-07 60.9 9.8 189 72-304 76-279 (375)
87 PF14305 ATPgrasp_TupA: TupA-l 95.3 0.45 9.8E-06 49.6 14.7 180 89-287 13-215 (239)
88 KOG3720 Lysosomal & prostatic 93.9 0.073 1.6E-06 59.6 5.0 58 478-548 69-133 (411)
89 COG0151 PurD Phosphoribosylami 92.1 0.44 9.6E-06 53.8 7.9 188 73-288 79-287 (428)
90 COG3919 Predicted ATP-grasp en 91.4 0.65 1.4E-05 50.7 7.8 155 95-287 113-285 (415)
91 PRK10172 phosphoanhydride phos 91.1 0.2 4.3E-06 56.8 3.9 59 477-547 70-135 (436)
92 cd07040 HP Histidine phosphata 91.0 0.34 7.5E-06 44.4 4.7 45 475-543 21-71 (153)
93 KOG3672 Histidine acid phospha 90.5 0.17 3.7E-06 56.5 2.6 73 478-565 167-245 (487)
94 PF14243 DUF4343: Domain of un 89.6 2.8 6E-05 40.2 9.6 82 192-290 32-117 (130)
95 KOG1382 Multiple inositol poly 88.5 0.4 8.6E-06 54.6 3.6 36 521-557 161-196 (467)
96 PRK10173 glucose-1-phosphatase 87.7 0.62 1.3E-05 52.5 4.5 59 477-547 68-133 (413)
97 COG1038 PycA Pyruvate carboxyl 86.9 1 2.2E-05 54.5 5.7 178 83-292 108-301 (1149)
98 PRK00696 sucC succinyl-CoA syn 85.0 0.24 5.2E-06 54.6 -0.5 43 97-152 5-48 (388)
99 KOG0238 3-Methylcrotonyl-CoA c 83.7 1.1 2.4E-05 51.8 4.0 182 83-292 98-291 (670)
100 KOG0369 Pyruvate carboxylase [ 83.0 1.4 3.1E-05 52.4 4.6 180 86-293 137-328 (1176)
101 PF03133 TTL: Tubulin-tyrosine 81.5 0.74 1.6E-05 48.3 1.5 55 146-218 67-127 (292)
102 PRK10172 phosphoanhydride phos 78.1 1.5 3.3E-05 49.9 2.7 22 352-373 30-51 (436)
103 COG4770 Acetyl/propionyl-CoA c 74.2 4.3 9.3E-05 47.8 4.9 179 83-292 102-295 (645)
104 KOG3720 Lysosomal & prostatic 72.0 2.5 5.4E-05 47.6 2.4 17 354-370 32-48 (411)
105 PHA02117 glutathionylspermidin 68.9 11 0.00023 42.7 6.5 65 146-228 309-379 (397)
106 TIGR01016 sucCoAbeta succinyl- 67.4 2.8 6.1E-05 46.2 1.6 42 98-152 6-48 (386)
107 PF13549 ATP-grasp_5: ATP-gras 63.9 2.6 5.5E-05 43.9 0.4 47 96-155 11-57 (222)
108 PRK10507 bifunctional glutathi 62.7 16 0.00035 43.6 6.6 73 146-238 529-607 (619)
109 cd07067 HP_PGM_like Histidine 61.4 12 0.00026 34.8 4.3 22 521-542 49-70 (153)
110 PF08442 ATP-grasp_2: ATP-gras 59.5 3.7 8.1E-05 42.1 0.6 42 99-153 6-48 (202)
111 PF00300 His_Phos_1: Histidine 59.1 8.3 0.00018 35.5 2.8 21 522-542 50-70 (158)
112 PF14403 CP_ATPgrasp_2: Circul 52.9 15 0.00033 42.2 4.1 191 6-235 185-429 (445)
113 TIGR03162 ribazole_cobC alpha- 52.6 10 0.00022 36.4 2.4 21 522-542 46-66 (177)
114 cd02639 R3H_RRM R3H domain of 51.8 17 0.00037 30.9 3.3 34 235-268 11-44 (60)
115 PLN00124 succinyl-CoA ligase [ 50.7 6.5 0.00014 44.7 0.8 44 98-152 33-77 (422)
116 PRK14046 malate--CoA ligase su 46.9 9.5 0.00021 42.8 1.3 22 99-120 7-28 (392)
117 PRK03482 phosphoglycerate muta 44.3 17 0.00038 36.4 2.6 20 522-541 50-69 (215)
118 PRK13463 phosphatase PhoE; Pro 43.6 17 0.00037 36.4 2.4 20 522-541 51-70 (203)
119 smart00855 PGAM Phosphoglycera 41.0 22 0.00047 33.5 2.6 21 522-542 51-71 (155)
120 COG0406 phoE Broad specificity 40.5 21 0.00045 35.4 2.5 22 522-543 53-74 (208)
121 COG1181 DdlA D-alanine-D-alani 39.4 9.7 0.00021 41.7 -0.0 73 143-228 86-160 (317)
122 PTZ00123 phosphoglycerate muta 38.6 23 0.00051 36.6 2.6 21 522-542 39-59 (236)
123 TIGR03848 MSMEG_4193 probable 37.9 24 0.00052 35.1 2.5 21 522-542 49-69 (204)
124 TIGR00249 sixA phosphohistidin 37.3 27 0.00059 33.8 2.7 21 522-542 47-67 (152)
125 PRK15004 alpha-ribazole phosph 37.0 24 0.00051 35.1 2.2 20 522-541 49-68 (199)
126 PRK10173 glucose-1-phosphatase 35.5 29 0.00064 39.4 2.9 57 352-417 27-89 (413)
127 KOG0370 Multifunctional pyrimi 34.6 93 0.002 39.4 6.9 213 50-295 987-1215(1435)
128 PRK01295 phosphoglyceromutase; 32.0 36 0.00079 34.4 2.7 21 522-542 53-73 (206)
129 PRK14115 gpmA phosphoglyceromu 30.6 39 0.00084 35.5 2.7 21 522-542 51-71 (247)
130 PTZ00122 phosphoglycerate muta 29.2 45 0.00097 36.2 2.9 22 522-543 156-177 (299)
131 TIGR00640 acid_CoA_mut_C methy 29.1 31 0.00067 33.2 1.5 71 7-79 55-125 (132)
132 PRK14116 gpmA phosphoglyceromu 29.1 41 0.00088 34.6 2.5 20 522-541 52-71 (228)
133 PRK10848 phosphohistidine phos 28.3 46 0.001 32.6 2.6 21 522-542 47-67 (159)
134 PRK14119 gpmA phosphoglyceromu 27.7 46 0.00099 34.2 2.6 20 522-541 52-71 (228)
135 PRK14118 gpmA phosphoglyceromu 26.9 47 0.001 34.2 2.5 21 522-542 51-71 (227)
136 PRK15416 lipopolysaccharide co 26.7 53 0.0012 34.1 2.8 19 522-540 103-121 (201)
137 PRK01112 phosphoglyceromutase; 25.2 56 0.0012 33.8 2.7 21 522-542 50-70 (228)
138 PRK13462 acid phosphatase; Pro 24.7 46 0.001 33.7 2.0 17 522-538 56-72 (203)
139 COG2062 SixA Phosphohistidine 23.0 73 0.0016 32.1 2.9 25 519-543 47-71 (163)
140 TIGR01258 pgm_1 phosphoglycera 22.5 64 0.0014 33.8 2.5 21 522-542 51-71 (245)
141 KOG0237 Glycinamide ribonucleo 22.3 34 0.00073 40.9 0.5 166 92-287 104-292 (788)
142 cd02071 MM_CoA_mut_B12_BD meth 22.3 44 0.00095 31.1 1.2 70 6-78 51-121 (122)
143 PF04577 DUF563: Protein of un 21.6 47 0.001 32.4 1.3 45 23-69 121-165 (206)
144 PF04174 CP_ATPgrasp_1: A circ 21.5 71 0.0015 35.5 2.7 23 266-288 67-90 (330)
145 PRK07238 bifunctional RNase H/ 21.4 67 0.0015 35.3 2.6 21 522-542 221-241 (372)
146 KOG2156 Tubulin-tyrosine ligas 20.5 19 0.0004 42.4 -2.0 72 111-216 283-360 (662)
147 PF12341 DUF3639: Protein of u 20.0 1.2E+02 0.0027 22.3 2.8 18 208-225 1-18 (27)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=4.6e-238 Score=1946.63 Aligned_cols=657 Identities=57% Similarity=0.907 Sum_probs=614.1
Q ss_pred CeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcc
Q 005046 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFL 84 (716)
Q Consensus 5 ~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~ 84 (716)
++|+||||||++|++||||++||+||..+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++||+||+
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPFv 118 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFV 118 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEec
Q 005046 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (716)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp 164 (716)
||||.||+++||||.||+||++.|||+|++.+++|+++++.++++++++|+++|||++|.||||||||+|||||||||||
T Consensus 119 iNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYP 198 (1018)
T KOG1057|consen 119 INDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYP 198 (1018)
T ss_pred eccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEec
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCce
Q 005046 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244 (716)
Q Consensus 165 ~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~ 244 (716)
+++|||.+||||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|+|||+|||||+||+|+||+||||+
T Consensus 199 sSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEv 277 (1018)
T KOG1057|consen 199 SSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEV 277 (1018)
T ss_pred CCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCcee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 005046 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPP 324 (716)
Q Consensus 245 r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~~~~~~~~~~~~~ 324 (716)
||||.||++||.||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++|++.+++++..+.+|+
T Consensus 278 RYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP~ 357 (1018)
T KOG1057|consen 278 RYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIPW 357 (1018)
T ss_pred eceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999898899999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCcceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCCcceeecch
Q 005046 325 ILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSA 404 (716)
Q Consensus 325 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~ 404 (716)
++||...++..+ ..+ .++++++|||||||||||||||||||||++|++++|++||.+|+|++ ++|+|||+|
T Consensus 358 ~~p~~~~~~~~~---~v~-----~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~~ 428 (1018)
T KOG1057|consen 358 SLPGIRNEKVEP---WVP-----TSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKSA 428 (1018)
T ss_pred CCcccccCCCCC---cee-----cCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCCH
Confidence 999987665332 222 34678999999999999999999999999999999999999999865 899999999
Q ss_pred hcHHHHHHHHhhhccCCCCCCCCCcchhhhhchhhHHHHHHHHHcCCCCCccce-eeccccccc------------ceEE
Q 005046 405 VQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQ------------CHLL 471 (716)
Q Consensus 405 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~kl~~l~~vL~~~~~f~G~nr-vQlKp~~~~------------~~~~ 471 (716)
.|||++||++|.++++.+ +.+++++|+..||+||++|||+||||||||| |||||+.|. ++++
T Consensus 429 ~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~~~~k~se~e~~r~~~ll 503 (1018)
T KOG1057|consen 429 NQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKWVYVKKSEGELEREPQLL 503 (1018)
T ss_pred HHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccccCCCCCccccccCccee
Confidence 999999999999997643 3344556678899999999999999999999 999998875 5688
Q ss_pred EEEccCccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcc
Q 005046 472 LANLVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDL 545 (716)
Q Consensus 472 li~KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~l 545 (716)
|||||||||||| ||||+|||++ |||.|+|||||||||||||||||||||||||||||||||||+|
T Consensus 504 liLKwGGelT~agr~QAeeLGr~FR~~~---------~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~l 574 (1018)
T KOG1057|consen 504 LILKWGGELTHAGRYQAEELGRQFRCDY---------PGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLAL 574 (1018)
T ss_pred EEeeeCCEecchhHhhHHHHHHHHHhcC---------CCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhh
Confidence 999999999999 9999999988 8888999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeEecCCcccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcccCCCCCCChhHHHHHHHHHHH
Q 005046 546 EGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK 625 (716)
Q Consensus 546 egeLtPilv~~V~kd~~~ld~~~~a~~~m~~vK~~L~~lL~~~~~~~~~~~~~~~~w~~~~~~~p~~p~~~~~~~~~l~~ 625 (716)
||+|||||||||+||+.|||++|+|++.|++||++||+|||.|.+|+ ++|+||..+ |+|+.++.+++++|+
T Consensus 575 EgelTpiLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~~-----~e~~~~~~~----P~~~~~l~~~ve~vk 645 (1018)
T KOG1057|consen 575 EGELTPILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREFT-----PEFDWPELM----PNPSEVLTQVVELVK 645 (1018)
T ss_pred ccCCcHHHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcCC-----CccchhhcC----CcHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 677999754 589999998888887
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCCCCchhhhhhcCCcccchhhhccCCCCCCCCHHHHHHHHHHHHHHHhcccCCcccC
Q 005046 626 KVTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDI 705 (716)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~c~~E~~~L~~eRW~KL~~dF~~~k~~kfD~ 705 (716)
.....+++.. +.. . ....++++.+|.+|+|++|+|+||++||+|||+|||+. +++|||
T Consensus 646 ~~~k~~~e~~-------~~~------~--------~~~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~Di 703 (1018)
T KOG1057|consen 646 NPVKVCDENF-------ALI------E--------PLDHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDI 703 (1018)
T ss_pred hHHHHHHHhh-------hcc------c--------cccceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCc
Confidence 6655443321 110 0 12237899999999999999999999999999999975 599999
Q ss_pred CCCCcccccCC
Q 005046 706 TQIPDVYDSCK 716 (716)
Q Consensus 706 SKIpdiYD~iK 716 (716)
|||||||||||
T Consensus 704 SKIpdiYD~~K 714 (1018)
T KOG1057|consen 704 SKIPDIYDTIK 714 (1018)
T ss_pred cccchHHhhhh
Confidence 99999999997
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-31 Score=280.87 Aligned_cols=255 Identities=22% Similarity=0.252 Sum_probs=204.0
Q ss_pred eecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcH-HHHHHHHHhcCCcccCCchh
Q 005046 12 CVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEP 90 (716)
Q Consensus 12 CaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iNdl~~ 90 (716)
+.++.--++-++..+..+.....-.+++-+..+.+...+...-..+|+++.+-...+.. ..+++.++..|.++||+..+
T Consensus 34 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~ 113 (318)
T COG0189 34 AILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQS 113 (318)
T ss_pred EEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHH
Confidence 33344444555555555544444456777888888888888888999999999999888 88888999999999999999
Q ss_pred hhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCCh
Q 005046 91 QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGG 170 (716)
Q Consensus 91 q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG 170 (716)
...++||..+++.|+++|||+|.|+++..+ ++....-.+.++.|+|+||++|+ .|-|
T Consensus 114 i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~~~~~~~~~~g~pvVlKp~~Gs-----------~G~g 170 (318)
T COG0189 114 IRRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DEAAEFVAEHLGFPVVLKPLDGS-----------GGRG 170 (318)
T ss_pred HHhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEeeCCCC-----------Cccc
Confidence 999999999999999999999999999843 12222233445699999999998 6667
Q ss_pred HHHHHhhhC-CCcccccccccccccC--cceEEeeccCC-CCceeEEEEECCceeE--EEeecCCCCCCceeecCCCCce
Q 005046 171 MKELFRKVG-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEV 244 (716)
Q Consensus 171 ~~rLfrkig-n~sS~~~p~~~~~r~~--gsyIyQEFi~~-~G~DIKvytVG~~~vh--Ae~RKSPv~DG~vrrN~~gke~ 244 (716)
+- +.+.-. +-.+..+ ..... ..+|.||||++ .+.|++|+++|+.+++ |++|.++ .|+||+|.|+|+.
T Consensus 171 V~-~v~~~d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~ 243 (318)
T COG0189 171 VF-LVEDADPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGR 243 (318)
T ss_pred eE-EecCCChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeecccccc
Confidence 64 444332 2222222 33333 46999999999 5677788888888888 8899886 9999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccch
Q 005046 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296 (716)
Q Consensus 245 r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~ 296 (716)
..+++||++++++|.|+|+++|+.+|||||+++++|.||+|||+-+-.|+.-
T Consensus 244 ~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~sP~~~~~i 295 (318)
T COG0189 244 AEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNVSPTGKGEI 295 (318)
T ss_pred ccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeCCCccccch
Confidence 9999999999999999999999999999999999999999999876566653
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=2.3e-29 Score=245.75 Aligned_cols=174 Identities=29% Similarity=0.423 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHH
Q 005046 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 94 l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (716)
..||..++++|+++|||+|.|.+++.. + +....+.--+ ++|+|+||+.|. .|-|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~---~------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~- 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP---E------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF- 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH---H------HHHHHHHHH-----SSEEEE-SB------------------E-
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH---H------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-
Confidence 368999999999999999999999843 1 2333443221 499999999997 566664
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP 252 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~ 252 (716)
+++......+..+. ....+..+++||||+. .|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|++
T Consensus 57 ~i~~~~~~~~~l~~---~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~ 131 (190)
T PF08443_consen 57 LINSPDELESLLDA---FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPE 131 (190)
T ss_dssp EEESHCHHHHHHH--------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----H
T ss_pred EecCHHHHHHHHHH---HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCH
Confidence 44444333332221 1235678899999999 56999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccch
Q 005046 253 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296 (716)
Q Consensus 253 eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~ 296 (716)
+++++|.++++++|+++|||||+++++++||||||.++-+++..
T Consensus 132 e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~~ 175 (190)
T PF08443_consen 132 EIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGIE 175 (190)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHHH
Confidence 99999999999999999999999999999999999999887653
No 4
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.94 E-value=1.4e-25 Score=238.49 Aligned_cols=267 Identities=19% Similarity=0.220 Sum_probs=193.9
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHH-hcCC
Q 005046 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (716)
Q Consensus 4 ~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~-lr~p 82 (716)
.+..+||-|--.||.+|==-..++....+.| ++++--..+- |+++=-.+|++|-....-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3578999888888888866666788777766 5554443332 44322246999887654321234455544 4678
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCC-------CCCCcEEEEecCCCccccccccCcccee--eecCeeecCcEEEeecc
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFV--EVHGNRFWKPFVEKPVH 153 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~g-------IP~P~t~~~~r~~~~~~~~~~~e~~d~I--~v~G~~~~kPfVeKpv~ 153 (716)
.+||.+.++..+.||..++++|+++| ||+|+++++.... ..+ ...-..++.|+|.||+.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~------------~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDE------------SSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHH------------HHHHHHHHHhcCCCCEEEeecc
Confidence 99999999999999999999999999 9999999998441 111 01112467999999999
Q ss_pred ccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC
Q 005046 154 GDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG 233 (716)
Q Consensus 154 GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG 233 (716)
|. |.-+.+....+-+..+.- ..+..|++||||.-+|.|+||||||+. ++|+.|+| .+
T Consensus 162 g~------------Gss~gh~m~lv~~~~~L~-------~l~~p~~lQEfVnh~g~d~RVfVvGd~-v~~~~R~S---~~ 218 (328)
T PLN02941 162 AD------------GSAKSHKMSLAYDQEGLS-------KLEPPLVLQEFVNHGGVLFKVYVVGDY-VKCVRRFS---LP 218 (328)
T ss_pred cC------------CCccccceEEecCHHHHH-------hcCCcEEEEEecCCCCEEEEEEEECCE-EEEEEecC---Cc
Confidence 92 211222333332221111 134469999999999999999999999 59999998 67
Q ss_pred cee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeC---CCcEEE
Q 005046 234 VVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVC 284 (716)
Q Consensus 234 ~vr---rN~~gk----------------e~-------r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~---g~syV~ 284 (716)
.|+ .|+++| +. ..+...+++-+++|.++++++|+.++||||++.. ++.||+
T Consensus 219 n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~Vi 298 (328)
T PLN02941 219 DVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVI 298 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEE
Confidence 777 888877 32 4455667789999999999999999999999996 357799
Q ss_pred eccCccccccchhhHHHHHHHHHHHH
Q 005046 285 DVNGWSFVKNSYKYYDDAACVLRKMF 310 (716)
Q Consensus 285 DVNgwSFVK~n~kYYddcA~IL~~~~ 310 (716)
|||+++-+|+-..|+..-.+-|.+++
T Consensus 299 dVN~fP~~k~~p~~~~~l~~~~~~~~ 324 (328)
T PLN02941 299 DINYFPGYAKMPGYETVLTDFLLSLV 324 (328)
T ss_pred EecCCCccccCCchHHHHHHHHHHHH
Confidence 99999999999999865555444443
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.94 E-value=9e-26 Score=234.10 Aligned_cols=250 Identities=20% Similarity=0.264 Sum_probs=183.2
Q ss_pred EEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCc-ceee--cCC-------CcccCCcCeeeccccCC--CcHHHHHH
Q 005046 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVIL--EDP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (716)
Q Consensus 8 ~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d-~vIL--~e~-------ve~wP~~D~lIsf~s~g--fpl~kai~ 75 (716)
++||-+.+....| -+.+++-+.+.| ++++++.- +..+ +.. ......+|+++++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4666666655444 345555555555 66655543 2222 111 12345789999976543 22244567
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEeeccc
Q 005046 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (716)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~G 154 (716)
.++..||+++|+..+..+++||..++++|+++|||+|+|.++... + +..+.++ .+ +.|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~---~------~~~~~~~~~~----~~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP---D------DTSDLIDMVG----GAPLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH---H------HHHHHHHHhC----CCCEEEEECCC
Confidence 889999999999999999999999999999999999999987522 1 1112222 22 38999999999
Q ss_pred cCcceeEEeccCCCChHHHHHhhhCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCC
Q 005046 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (716)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~D 232 (716)
. .|.|+. +++...+....++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 6 555554 3322211111111 11 23456999999987 79999999999999999999886 7
Q ss_pred CceeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccc
Q 005046 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSF 291 (716)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSF 291 (716)
|.|+.|.+.|+..++..|+++++++|.++++++|..++|||++.+.+|+||+|||..+=
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~pg 266 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPG 266 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECCCC
Confidence 89999999888999999999999999999999999999999999987899999997543
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.91 E-value=2.8e-24 Score=215.71 Aligned_cols=249 Identities=20% Similarity=0.234 Sum_probs=178.4
Q ss_pred EEEeecCCccCChhHHHHHHHhhcCCceEEEEeCc---ceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCccc
Q 005046 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (716)
Q Consensus 9 iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~i 85 (716)
|||++=.... =++.+.+.+.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654333 4445555555555 55666653 233333223489999999887444443467778888898899
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
|+..+..+++||+..+++|+++|||+|+|..+... + +....+. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~---~------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP---E------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH---H------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988632 1 1112222 23489999999986
Q ss_pred CCCChHHHHHhhhCCCccccccccccc-ccCcceEEeeccCCC-CceeEEEEECCceeEEEeecCCCCCCceeecCCCCc
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTG-GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFi~~~-G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke 243 (716)
.|.|+. +++...+....+. .+... ...+.||+||||+.. |.|+||+++|+++++++.|.. .+.|+.|.+.|+
T Consensus 135 -~g~gv~-~i~~~~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~ 208 (277)
T TIGR00768 135 -WGRLVS-LARDKQAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGG 208 (277)
T ss_pred -CCCceE-EEcCHHHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCC
Confidence 333332 1111100000000 00000 112579999999974 699999999999999998873 688999999888
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCC-CcEEEeccCcc
Q 005046 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEG-RSYVCDVNGWS 290 (716)
Q Consensus 244 ~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g-~syV~DVNgwS 290 (716)
...++.|+++.+++|.++++++|..+||||++.+.+ ++||+|||..+
T Consensus 209 ~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~p 256 (277)
T TIGR00768 209 KAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNP 256 (277)
T ss_pred eeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCCc
Confidence 888999999999999999999999999999999865 79999999865
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.91 E-value=1.3e-23 Score=213.24 Aligned_cols=238 Identities=18% Similarity=0.195 Sum_probs=171.4
Q ss_pred hHHHHHHHhhcCCceEEE-EeCcc--eeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHH
Q 005046 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (716)
Q Consensus 22 Pm~~IL~rL~~~g~feii-iF~d~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~ 98 (716)
..+.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+.........++..+..++|+..+...++||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3566666666655 3332 23333 344666679999999998733332223445566788988999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhh
Q 005046 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (716)
Q Consensus 99 ~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (716)
..+++|+++|||+|+|..+... . +..+.. ..++.|+|+||..|. .|-|+. ++...
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~---~------~~~~~~----~~~~~P~vvKP~~g~-----------~g~gv~-~v~~~ 144 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR---E------AALKLA----EALGYPVVLKPVIGS-----------WGRLVA-LIRDK 144 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH---H------HHHHHH----HHcCCCEEEEECcCC-----------CcCCEE-EECCH
Confidence 9999999999999999988622 1 111111 124589999999985 333432 11111
Q ss_pred CCCccccccccccc--ccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH
Q 005046 179 GNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 256 (716)
Q Consensus 179 gn~sS~~~p~~~~~--r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~ 256 (716)
.+....+.. .... ..+..+|+||||+..|.|++++++|+.++|++.|.+ +.|+.|.+.|+...|+.++++.++
T Consensus 145 ~~l~~~~~~-~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~ 219 (280)
T TIGR02144 145 DELESLLEH-KEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEE 219 (280)
T ss_pred HHHHHHHHH-HHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHH
Confidence 000000000 0001 124569999999987999999999999999999976 678999988888889999999999
Q ss_pred HHHHHHHHhcCceeeEeEEeeC-CCcEEEeccCcc
Q 005046 257 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 257 iA~ka~kafgq~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
+|.++++++|..++|||++.+. |++||+|||.++
T Consensus 220 ~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~p 254 (280)
T TIGR02144 220 LAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHVP 254 (280)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCCc
Confidence 9999999999999999999985 479999999864
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=99.90 E-value=6.2e-24 Score=222.90 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=153.3
Q ss_pred cccCCcCeeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccc
Q 005046 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~ 126 (716)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+...+.||+.+++++. ++|+|.++... +
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~---~-- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK---A-- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH---H--
Confidence 4578899999886555542 45788888899999999999999999999999766 89999887632 1
Q ss_pred ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc--cCcceEEeecc
Q 005046 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (716)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFi 204 (716)
+..+.++-. .|+|+||++|+ +|.|+.++-..-.+..+.++ ... ....||+|+||
T Consensus 146 ----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~I 201 (316)
T PRK05246 146 ----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFRVKADDPNLGSILE----TLTEHGREPVMAQRYL 201 (316)
T ss_pred ----HHHHHHHHC-----CCEEEEECCCC-----------CccceEEEeCCCccHHHHHH----HHHHccCCeEEEEecc
Confidence 112222212 48999999997 55565422111011111111 122 24589999999
Q ss_pred CC-CCceeEEEEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCC
Q 005046 205 PT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (716)
Q Consensus 205 ~~-~G~DIKvytVG~~~vh-Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---kafgq~VcGfDLLRs~g 279 (716)
+. .+.|+||+++|++++| |+.|.++ .|+||+|.|.|+...++.||++++++|.+++ ++.|+.+||||++
T Consensus 202 ~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---- 275 (316)
T PRK05246 202 PEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI---- 275 (316)
T ss_pred ccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe----
Confidence 98 5789999999999999 9999987 7999999999999999999999999999999 5779999999999
Q ss_pred CcEEEeccCc
Q 005046 280 RSYVCDVNGW 289 (716)
Q Consensus 280 ~syV~DVNgw 289 (716)
+.||+|||..
T Consensus 276 ~~~l~EvN~~ 285 (316)
T PRK05246 276 GDYLTEINVT 285 (316)
T ss_pred CCEEEEEeCC
Confidence 4589999954
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.90 E-value=1.3e-23 Score=220.84 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=153.0
Q ss_pred cccCCcCeeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccc
Q 005046 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~ 126 (716)
-.|+.+|+++.+-...|.. ...+++++..|..++|+..+.....||..+++++. |+|+|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~---~-- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK---A-- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH---H--
Confidence 4588999999886555542 46889999999999999999999999999988763 89999987632 1
Q ss_pred ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc--cCcceEEeecc
Q 005046 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (716)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFi 204 (716)
+..+.+.-. .|+|+||+.|+ .|.|+.++-..-.+.++..+ ... ....|++||||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~v~~~~~~~~~~~~----~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFRLDPGDPNFNSILE----TMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEEEcCCCccHHHHHH----HHHhccCCcEEEEecc
Confidence 112222211 38999999997 55565432110100111111 111 23579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCC
Q 005046 205 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (716)
Q Consensus 205 ~~-~G~DIKvytVG~~~v-hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---kafgq~VcGfDLLRs~g 279 (716)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...++.||++|+++|.+++ +++|+.+||||+|
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 778999999999975 69999886 8999999999999999999999999999998 7789999999999
Q ss_pred CcEEEeccCc
Q 005046 280 RSYVCDVNGW 289 (716)
Q Consensus 280 ~syV~DVNgw 289 (716)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999954
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.88 E-value=1e-22 Score=216.68 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=150.0
Q ss_pred cccCCcCeeeccccCCCcH--HHHHH--------HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCC
Q 005046 52 EKWPICDCLIAFYSSGYPL--EKAES--------YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl--~kai~--------y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~ 121 (716)
-.|..+|+++.+-.-.+.. ...+. +++..+.+++|+..+...+.||+..+++++ +++|+|++.+..
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578889999876555543 22333 236778999999999999999998876444 789999987622
Q ss_pred CccccccccCccceee-ecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhC--CCcccccccccccccCcce
Q 005046 122 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 198 (716)
Q Consensus 122 ~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig--n~sS~~~p~~~~~r~~gsy 198 (716)
+ +..+.++ .++ .|+|+||++|. .|.|+.+ +..-. |..+.++ .....+.+
T Consensus 151 --~------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~~-v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 --E------YIREFLEESPG----DKMILKPLQGS-----------GGQGVFL-IEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred --H------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeEE-EecCChhhHHHHHH----HHhhCCCE
Confidence 1 1122232 232 46999999997 5555542 21111 1111121 22235689
Q ss_pred EEeeccCC-CCceeEEEEECCcee------EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh---cCc
Q 005046 199 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 268 (716)
Q Consensus 199 IyQEFi~~-~G~DIKvytVG~~~v------hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf---gq~ 268 (716)
|+||||++ .+.|+||++||++++ ||+.|.++ .|+||+|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999997 678999999999999 99999885 7999999999989999999999999999999988 999
Q ss_pred eeeEeEEeeCCCcEEEeccCc
Q 005046 269 VCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 269 VcGfDLLRs~g~syV~DVNgw 289 (716)
+||||++ +.+|+|||..
T Consensus 281 ~~gVDli----~~~l~EIN~~ 297 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNVF 297 (338)
T ss_pred EEeEEEE----CCEEEEEeCC
Confidence 9999999 5689999943
No 11
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.79 E-value=2.7e-19 Score=189.96 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=134.8
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEeeccccCcceeEE
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
..|+=+...++.||..+.++|+++|||+|+|..+..... ..++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 458888889999999999999999999999988774311 1122222 233 257999999999
Q ss_pred eccCCCChHHHHHhhhCCCc------cccccc-cc---------ccccC--cceEEeeccCCC-----------CceeEE
Q 005046 163 YPSSAGGGMKELFRKVGNRS------SEFHPD-VR---------RVRRE--GSYIYEEFMPTG-----------GTDVKV 213 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~s------S~~~p~-~~---------~~r~~--gsyIyQEFi~~~-----------G~DIKv 213 (716)
+|-|+. +++...+.. +.+.++ +. .+... ..+.|+||+... +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 888876 443322111 010000 00 00112 224445664332 389999
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 005046 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (716)
Q Consensus 214 ytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt--------------------------------~eEk~iA~ka 261 (716)
+|||++.++||.|.+. -.|.|+.|.|.|+...++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999662 357899999999999998886 6788999999
Q ss_pred HHHhcCceeeEeEEee-CCCcEEEeccCcccc
Q 005046 262 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 292 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs-~g~syV~DVNgwSFV 292 (716)
++++|+.++|+|++.+ .++++|+|||+-+-+
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 689999999987644
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.77 E-value=4.5e-19 Score=199.78 Aligned_cols=180 Identities=22% Similarity=0.336 Sum_probs=135.5
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEe
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYy 163 (716)
.+|+..+..++.||..+.++|+++|||+|++.+++.. + +..++++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~---~------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG---E------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH---H------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6788899999999999999999999999999998722 1 1111222 233 7999999997
Q ss_pred ccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 005046 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (716)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~------ 234 (716)
+|.|+. + .+.+... +..-+. ..+....+|.|||++ |.|+||+|||+++++|+.|.+|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 666664 2 1211111 111000 122445799999994 999999999999999999998843 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 005046 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (716)
Q Consensus 235 ------------------------------------------------vrrN~~gke~r~pv--~Lt~eEk~iA~ka~ka 264 (716)
.++|+|-|+....| .+.|+.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788888888788 7999999999999999
Q ss_pred hcCceeeEeEEeeC-CCc--EEEeccCcccccc
Q 005046 265 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFVKN 294 (716)
Q Consensus 265 fgq~VcGfDLLRs~-g~s--yV~DVNgwSFVK~ 294 (716)
+|+.||||||+... .+| +|||||.-+-..+
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~ 526 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGLAN 526 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccccc
Confidence 99999999999874 455 7999997765543
No 13
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.75 E-value=4.8e-17 Score=167.71 Aligned_cols=247 Identities=17% Similarity=0.190 Sum_probs=165.5
Q ss_pred eeEEEEee------cCCccCChhHHHHHHHhhcCCceEEEEeCc-ceeecCCCcccCCcCeeeccccCCCcHH-HHHHHH
Q 005046 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (716)
Q Consensus 6 ~i~iGVCa------M~~Ka~SkPm~~IL~rL~~~g~feiiiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~ 77 (716)
+++|+||+ -+....|. +.|++-|.+.| ++++.... +-+++ .-.+..+|+++..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 44444443 67777777654 66666532 22222 122457899998865434332 244456
Q ss_pred HhcCCcccCC-chhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccC
Q 005046 78 TLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (716)
Q Consensus 78 ~lr~p~~iNd-l~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ged 156 (716)
+..+...+|. ..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~-~~~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE------------EDLLAA-IDKLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc------------chHHHH-HhhcCCCEEEeeCCCC-
Confidence 6777766655 789999999999999999999999999998833 111111 1134589999999985
Q ss_pred cceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--
Q 005046 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (716)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG-- 233 (716)
.|.|+. ++.|.....+ -+. .......+|+|||++ |.++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 333332 1211111000 000 012256799999997 8999999999999888887763 34
Q ss_pred ceeecCCCCceee--eeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEEeccCcc
Q 005046 234 VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 234 ~vrrN~~gke~r~--pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
.++.+.+.|+..+ |..+++++ +++|.++++++|. .+|+||++.++ |++||+|||..+
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p 270 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCC
Confidence 4677777665443 33577654 6789999999998 48999999997 669999999754
No 14
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.72 E-value=9.3e-18 Score=194.70 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=136.9
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEe
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYy 163 (716)
.-++..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 5778888999999999999999999999999987632 222221 1235699999999996
Q ss_pred ccCCCChHHHH-HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 005046 164 PSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (716)
Q Consensus 164 p~~~GgG~~rL-frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~------ 234 (716)
+|.|+. + .+....-.+.++. ..+....+|+|||++ |.|+||+|||+++++|..|.+|-+ ||.
T Consensus 261 ---~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 455553 2 1111100111110 112346799999996 999999999999999999998854 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 005046 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (716)
Q Consensus 235 -------------------------------------------------vr--rN~~gke~r~pv~--Lt~eEk~iA~ka 261 (716)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 4888888888886 999999999999
Q ss_pred HHHhcCceeeEeEEeeC-------CCcEEEeccCccccccc
Q 005046 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKNS 295 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-------g~syV~DVNgwSFVK~n 295 (716)
|+++|+.||||||+... .+..|||||.=+-++..
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~ 452 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMH 452 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhc
Confidence 99999999999999853 45689999988777653
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.71 E-value=1.6e-17 Score=195.94 Aligned_cols=177 Identities=21% Similarity=0.292 Sum_probs=130.6
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEec
Q 005046 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (716)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp 164 (716)
.++..+..+++||..+.++|+++|||+|++.++... ++..+. -..++.|+|+||.+|.
T Consensus 202 ~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~--------- 259 (864)
T TIGR02068 202 RTSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN--------- 259 (864)
T ss_pred CCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC---------
Confidence 356778899999999999999999999999988632 122221 1234599999999996
Q ss_pred cCCCChHHHH-HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC----------
Q 005046 165 SSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG---------- 233 (716)
Q Consensus 165 ~~~GgG~~rL-frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG---------- 233 (716)
+|.|+. + .+........|. ........+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 --~G~GV~-l~v~s~~el~~a~~---~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 260 --HGRGVT-INILTRDEIESAYE---AAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred --CccCEE-EEeCCHHHHHHHHH---HHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHH
Confidence 455543 2 111100000011 0112345799999995 89999999999999999999997544
Q ss_pred --------------------------------------------c---e--eecCCCCceeeee--eCCHHHHHHHHHHH
Q 005046 234 --------------------------------------------V---V--MRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (716)
Q Consensus 234 --------------------------------------------~---v--rrN~~gke~r~pv--~Lt~eEk~iA~ka~ 262 (716)
+ + ++|.+.|+...-+ .++|+.+++|.++|
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 1 3 5678888888777 99999999999999
Q ss_pred HHhcCceeeEeEEee-------CCCcEEEeccCccc
Q 005046 263 IAFRQAVCGFDLLRC-------EGRSYVCDVNGWSF 291 (716)
Q Consensus 263 kafgq~VcGfDLLRs-------~g~syV~DVNgwSF 291 (716)
+++|+.||||||+-. ..+..|||||+-+=
T Consensus 412 ~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~ 447 (864)
T TIGR02068 412 KIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPG 447 (864)
T ss_pred HHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCcc
Confidence 999999999999763 23347999997643
No 16
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.65 E-value=2.6e-16 Score=183.28 Aligned_cols=184 Identities=19% Similarity=0.201 Sum_probs=127.6
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
...|...+-.+++||..+.++|+++|||+|++..+... + +..+.+. ...+.|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~---e------~a~~~~~---~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL---E------EALADYS---LFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH---H------HHHHHHH---HhcCCCEEEEECCCC-------
Confidence 45677777788899999999999999999999888622 0 1111221 112489999999997
Q ss_pred eccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--e---
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--V--- 235 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~--v--- 235 (716)
.|-|+. +++.+.+.......=....+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-| ||. +
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 677765 55544333322221000223456799999995 999999999999999999999866 443 1
Q ss_pred --eec--------------------------------------------------CCCCceeee--eeCCHHHHHHHHHH
Q 005046 236 --MRN--------------------------------------------------PDGKEVRYP--VLLTPNEKQMAREV 261 (716)
Q Consensus 236 --rrN--------------------------------------------------~~gke~r~p--v~Lt~eEk~iA~ka 261 (716)
..| .+-|+...- =.+.|+-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 011 221221111 14667779999999
Q ss_pred HHHhcCceeeEeEEeeC-------C--CcEEEeccCcccc
Q 005046 262 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSFV 292 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-------g--~syV~DVNgwSFV 292 (716)
|+++|+.||||||+-.. . +..|||||+=+-.
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l 728 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAM 728 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCch
Confidence 99999999999999653 1 5579999986543
No 17
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.60 E-value=2.5e-14 Score=148.44 Aligned_cols=247 Identities=15% Similarity=0.184 Sum_probs=156.7
Q ss_pred cCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhh
Q 005046 18 VFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLH 95 (716)
Q Consensus 18 a~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~ 95 (716)
+.-+--++|++-|.+.| ++++.++..--+-......+.+|+++....-.+-. ..+.+.++..+.+.+ ++..+..+++
T Consensus 16 ~sl~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~ 94 (299)
T PRK14571 16 ISLRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICF 94 (299)
T ss_pred chHHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHc
Confidence 33345567777787755 66665543211111122234678888775433322 345667778886666 5689999999
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||..+.++|+ +|||+|++..+... . ....++.|+|+||.+|. .|-|+.
T Consensus 95 DK~~~k~~l~-~~ip~p~~~~~~~~------------~-----~~~~l~~P~vvKP~~g~-----------~s~Gv~--- 142 (299)
T PRK14571 95 DKLLTYRFLK-GTVEIPDFVEIKEF------------M-----KTSPLGYPCVVKPRREG-----------SSIGVF--- 142 (299)
T ss_pred CHHHHHHHHh-cCCCCCCEEEEech------------h-----hhhhcCCCEEEecCCCC-----------CcCCEE---
Confidence 9999999998 58999999888521 0 01235699999999985 233332
Q ss_pred hhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCCCC--ceeecCCCCcee--ee
Q 005046 176 RKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVR--YP 247 (716)
Q Consensus 176 rkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~---~vhAe~RKSPv~DG--~vrrN~~gke~r--~p 247 (716)
++.|.... ...+. ..+....+|+||||+ |+++.|-++|.. .+.+....-| .++ .+..+.++++.. .|
T Consensus 143 -~v~~~~el-~~~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 143 -ICESDEEF-QHALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred -EECCHHHH-HHHHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeC
Confidence 12111110 00000 112345799999996 899999999853 3555544333 122 133444445544 35
Q ss_pred eeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEeccCccccccchhhHHHH
Q 005046 248 VLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302 (716)
Q Consensus 248 v~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVNgwSFVK~n~kYYddc 302 (716)
..|+++. +++|.++++++|. .+|+||+.-.+|++||+|||.-+-......+...|
T Consensus 218 ~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~Pg~~~~s~~~~~~ 277 (299)
T PRK14571 218 APLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVPGLTELSDLPASA 277 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCCCCCccCHHHHHH
Confidence 6688764 5689999999995 79999999888899999999987776554444333
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.58 E-value=2.8e-14 Score=147.78 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=132.5
Q ss_pred CCcCeeeccccCCCcH-HHHHHHHHhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iN-dl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++.....+.. ..+-+.++..+.+.+| +..+..+++||..+.++|+++|||+|++..+.++.. . .
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--~------~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRA--S------A 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccc--c------c
Confidence 3579998854221122 3556677888866666 489999999999999999999999999999872210 0 0
Q ss_pred cce-eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 133 EDF-VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 133 ~d~-I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.+. +.--...++.|+|+||..|. ..+|++-... ..|.+.+.. ....+..+|+|||++ |++
T Consensus 134 ~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~------~el~~~~~~----------~~~~~~~~lvEe~i~--G~e 195 (315)
T TIGR01205 134 DELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSE------EELQAALDE----------AFEYDEEVLVEQFIK--GRE 195 (315)
T ss_pred hhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCH------HHHHHHHHH----------HHhcCCcEEEEcCCC--CEE
Confidence 000 00000134699999999974 2333222211 111111100 112356799999995 999
Q ss_pred eEEEEEC-CceeEEEeecCCCC-CCceeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCC-C
Q 005046 211 VKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEG-R 280 (716)
Q Consensus 211 IKvytVG-~~~vhAe~RKSPv~-DG~vrrN~~gke~r--~pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g-~ 280 (716)
+.|.++| +.....+.+-.... --.+..+.+.++.. .|..|++++ +++|.++++++|. .+|+||++.+.+ +
T Consensus 196 ~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~ 275 (315)
T TIGR01205 196 LEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGE 275 (315)
T ss_pred EEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 9999999 54334443322100 00123343433333 344677754 7899999999998 699999999864 6
Q ss_pred cEEEeccCc
Q 005046 281 SYVCDVNGW 289 (716)
Q Consensus 281 syV~DVNgw 289 (716)
+||+|||.-
T Consensus 276 ~~viEvN~~ 284 (315)
T TIGR01205 276 IYLNEINTI 284 (315)
T ss_pred EEEEEeeCC
Confidence 999999964
No 19
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.56 E-value=7.4e-15 Score=170.38 Aligned_cols=179 Identities=22% Similarity=0.304 Sum_probs=121.2
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee-eecCeeecCcEEEeeccccCcceeEE
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I-~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
...+..+-.++.||..+-++|+++|||+|....+.... +....+ .+. ++|+|+||++|.
T Consensus 463 s~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~----g~PVVVKP~~g~------- 522 (737)
T TIGR01435 463 SKDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFE----NKAIVVKPKSTN------- 522 (737)
T ss_pred CCccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhc----CCCEEEeeCCCC-------
Confidence 34456667899999999999999999999998886321 011111 223 389999999997
Q ss_pred eccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--ee-
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM- 236 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~--vr- 236 (716)
+|-|+. +++...+. .++...+. ..+.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||. ++
T Consensus 523 ----~G~GVs-i~~~~~~~-eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~e 594 (737)
T TIGR01435 523 ----YGLGIT-IFKNGFTL-EDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRE 594 (737)
T ss_pred ----CcCCeE-EecCcCCH-HHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHH
Confidence 666664 33322111 11111111 234566799999996 999999999999999999998866 553 11
Q ss_pred ----ecCC---CCcee-----------------------------------------------eee-eCCHHHHHHHHHH
Q 005046 237 ----RNPD---GKEVR-----------------------------------------------YPV-LLTPNEKQMAREV 261 (716)
Q Consensus 237 ----rN~~---gke~r-----------------------------------------------~pv-~Lt~eEk~iA~ka 261 (716)
.|.+ |++.+ -.+ .+.|+-+++|.+|
T Consensus 595 LI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~a 674 (737)
T TIGR01435 595 LVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRI 674 (737)
T ss_pred HHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHH
Confidence 1211 12111 111 4556779999999
Q ss_pred HHHhcCceeeEeEEeeC-C--------CcEEEeccCcc
Q 005046 262 CIAFRQAVCGFDLLRCE-G--------RSYVCDVNGWS 290 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-g--------~syV~DVNgwS 290 (716)
|+|+|+.||||||+-.. . +.-|||||.=+
T Consensus 675 a~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 675 ATAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred HHhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 99999999999999542 1 12389999754
No 20
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.53 E-value=7.2e-15 Score=144.58 Aligned_cols=145 Identities=22% Similarity=0.339 Sum_probs=92.0
Q ss_pred CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc
Q 005046 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (716)
Q Consensus 111 ~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (716)
+|.|++.... . +..++++-.| . +|+||+.|. .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~---~------~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDK---E------EIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-H---H------HHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCH---H------HHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 4788777622 1 2233343333 3 999999997 55566544333333344443
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 005046 191 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (716)
Q Consensus 191 ~~r~~--gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-- 265 (716)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.++ .|+||.|.+-|+...++.||++|++||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 54599999999999999999996 9999999999999999999999999999999887
Q ss_pred -cCceeeEeEEeeCCCcEEEeccCcc
Q 005046 266 -RQAVCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 266 -gq~VcGfDLLRs~g~syV~DVNgwS 290 (716)
|+..+|+|+| |.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7889999999 56999999765
No 21
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.49 E-value=3.5e-13 Score=140.62 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=151.6
Q ss_pred eeEEEEeec----CCccCChhHHHHHHHhhcCCceEEEEeCc--ceeecCCCcccCCcCeeec-cccCCCcHHHHHHHHH
Q 005046 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLIA-FYSSGYPLEKAESYAT 78 (716)
Q Consensus 6 ~i~iGVCaM----~~Ka~SkPm~~IL~rL~~~g~feiiiF~d--~vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~ 78 (716)
+++|+|-+= ++-+.-+-.++|++-|.+- .++++.++- .-++..=.+. .+|+++. +|+..--...+...++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 456666542 2233335677888888775 477777642 1112111111 3565444 4433222245666777
Q ss_pred hcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-C
Q 005046 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-D 156 (716)
Q Consensus 79 lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-d 156 (716)
+.+ ||+-++..+..+++||..+.++|+++|||||++.++... ... -..++.|+|+||.+|. .
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~------------~~~----~~~~~~P~vVKP~~ggss 143 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK------------LVA----EDEISFPVAVKPSSGGSS 143 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh------------hhh----HhhcCCCEEEEeCCCCCC
Confidence 877 556678899999999999999999999999999877621 001 1235699999999974 2
Q ss_pred cceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCcee
Q 005046 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vr 236 (716)
.+|++.... ..|.+.+. .....+.+|+||||+ |+++.|.++|+....+....++ .+.+.
T Consensus 144 ~Gv~~v~~~------~eL~~a~~-----------~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~ 202 (296)
T PRK14569 144 IATFKVKSI------QELKHAYE-----------EASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYD 202 (296)
T ss_pred cCeEEcCCH------HHHHHHHH-----------HHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCC
Confidence 222222211 11222111 111224689999995 8999999999876555544432 22221
Q ss_pred e-cCCCCceee--eeeCC----HHHHHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEEeccCcc
Q 005046 237 R-NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 237 r-N~~gke~r~--pv~Lt----~eEk~iA~ka~kafgq-~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
. +.+.++..+ |..++ .+-+++|.++++++|. .+|.||++-+. |.+||+|||.-+
T Consensus 203 ~~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~P 265 (296)
T PRK14569 203 YESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSP 265 (296)
T ss_pred hhhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCC
Confidence 1 222333333 44454 3567789999999995 69999998864 669999999543
No 22
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.42 E-value=9.9e-13 Score=136.67 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=128.3
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++|+.+....++ .+..+.++..+ +++.|+.++..+++||....++|+++|||+|++..+... +
T Consensus 69 ~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~ 136 (326)
T PRK12767 69 KIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------E 136 (326)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------H
Confidence 357888865444333 33334444555 467899999999999999999999999999999887622 1
Q ss_pred ceee-ecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~-v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+... +.-..++.|+|+||.+|. .|.|+. +++ |. .++.. .+.....+|+||||.-..-.+-
T Consensus 137 ~~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~ 197 (326)
T PRK12767 137 DFKAALAKGELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVD 197 (326)
T ss_pred HHHhhhhcccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEE
Confidence 2111 011235699999999885 333432 111 11 11110 1222348999999944455666
Q ss_pred EEEE-CCceeEEEeecCCCCCCceeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEeccC
Q 005046 213 VYTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 213 vytV-G~~~vhAe~RKSPv~DG~vrrN~~gke-~r~pv~Lt~eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVNg 288 (716)
+|+. ++++++...++.- ...+|. ....+...++-+++|.++++++|. .+++||++...|++||+|+|.
T Consensus 198 ~~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 198 VLCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 6776 6777776666531 112222 122234568889999999999999 599999999999999999995
No 23
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.41 E-value=1.9e-12 Score=137.25 Aligned_cols=206 Identities=18% Similarity=0.204 Sum_probs=129.0
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++-..-.+..+ .+..++++.+ ||+=++..+..+++||..+.++|+++|||+|++..+..... ..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~---------~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDW---------EE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEecccc---------ch
Confidence 6899888754333332 4556777777 45556789999999999999999999999999998874310 00
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
..+..-...++.|+|+||.+|. .-+|++..... .|.+.+.. ..+.+..+|+||||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~------el~~a~~~----------~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEE------ELAAALDL----------AFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHH------HHHHHHHH----------HHhcCCcEEEEcCcC--CEEEE
Confidence 0011011235699999999974 22222222111 11111110 123456799999997 89999
Q ss_pred EEEECCc-eeEEEeecCCCCCCcee--ecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeC-CCc
Q 005046 213 VYTVGPE-YAHAEARKSPVVDGVVM--RNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCE-GRS 281 (716)
Q Consensus 213 vytVG~~-~vhAe~RKSPv~DG~vr--rN~-~g-ke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLRs~-g~s 281 (716)
|-++|.+ .+......-+ -++-+. ..- .| .+...|..|+++ -+++|.++++++|. .+|.+|++-+. |.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 1111111111 011110 111 12 233456777765 46899999999997 79999999875 458
Q ss_pred EEEeccCc
Q 005046 282 YVCDVNGW 289 (716)
Q Consensus 282 yV~DVNgw 289 (716)
||+|||.-
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999955
No 24
>PRK06849 hypothetical protein; Provisional
Probab=99.40 E-value=2.4e-12 Score=138.33 Aligned_cols=194 Identities=16% Similarity=0.232 Sum_probs=130.0
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
+|++||..+..+.+.++.+.++..-.+..++.+....++||...++.++++|||+|+|..++.. ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 6889988876655555555554444567899999999999999999999999999999998732 1111
Q ss_pred eecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV 216 (716)
...-...+.|+|+||+.|. .|.|+.+ +.+. ..+. . .....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~-~~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-E-LPISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-c-cccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112489999999986 3434431 1111 1111 0 011234569999999965556777888
Q ss_pred CCceeEEEeecCCCCCCceeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecc
Q 005046 217 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (716)
Q Consensus 217 G~~~vhAe~RKSPv~DG~vrrN~~gk-e~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs-~g~syV~DVN 287 (716)
++++++...... .... .++ .+.+.....++-.++|.++++++|.. +++||++.+ +|..|++|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 888765444321 1111 111 12222234678899999999999977 999999998 5678999999
No 25
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.39 E-value=5.9e-13 Score=136.20 Aligned_cols=115 Identities=24% Similarity=0.214 Sum_probs=80.4
Q ss_pred ceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCCcceeecchhcHHHHHHHHhhhccCCCCCCCCCcchhhh
Q 005046 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDF 434 (716)
Q Consensus 355 eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 434 (716)
||+.|+.|+|||||||-.+++..+..+.+..+..
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELES---------------------------------------------- 34 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhh----------------------------------------------
Confidence 6999999999999999988775555554444331
Q ss_pred hchhhHHHHHHHHHcCCCCCccceeecccccccceEEEEEccCccccch------HHHHHHHhccchhhhhhcCCCCCCc
Q 005046 435 EHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGT 508 (716)
Q Consensus 435 e~~~kl~~l~~vL~~~~~f~G~nrvQlKp~~~~~~~~li~KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~ 508 (716)
.+...+.+++|++. .+| .......+||+ ||+. +||+.||+ . |+
T Consensus 35 --------~~~~~~~~~~~~~~-~~~-------~~~~~~~~~g~-LT~~G~~q~~~lG~~lr~-~---------Y~---- 83 (347)
T PF00328_consen 35 --------SAMSPETPGPFPGN-YIQ-------NEFNWPCKWGQ-LTPRGMEQHYQLGKRLRE-R---------YP---- 83 (347)
T ss_dssp --------HHHHHTGGSGGGGT-T---------TCCGSSSCTTS-BTHHHHHHHHHHHHHHHH-H---------HH----
T ss_pred --------hhcccCCCCCcccc-ccc-------cccccCCCCCc-ccchhhhHHHHHHHHHHH-H---------HH----
Confidence 22233444556654 222 12223468898 9998 99999999 5 65
Q ss_pred chhhhcccccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 509 gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
+|+.-+.+. .++.||||+..||++||+||+.||+...+
T Consensus 84 ~l~~~~~~~-~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~ 121 (347)
T PF00328_consen 84 GLFPDNYNP-EQVYVRSTNKQRTIQSAQAFLQGLYPPSG 121 (347)
T ss_dssp TSSTSSS-T-TTEEEEEESSHHHHHHHHHHHHHHSHTTS
T ss_pred Hhccccccc-cceeEEEeccchHHHHHHHHHHHHhCCCc
Confidence 666555555 89999999999999999999999997766
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.39 E-value=1.4e-12 Score=138.80 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=125.6
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
+|++++-+.. .+. .+++.++..+.++.++..+..+++||....+.| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 7888775543 333 345677778877889999999999999999975 8999999999888732 122
Q ss_pred eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
... ...++.|+|+||++|. .-++++..... -..+.++..... ....++.+|+||||+ .+..+-|.
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~~s~gv~~v~~~~---el~~~~~~~~~~---------~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSSSGKGQSVVRGPE---DIEKAWEYAQEG---------ARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HHH-HHHcCCCEEEEECCCcCCCCeEEECCHH---HHHHHHHHHHhh---------ccCCCCCEEEEEecC-CCEEEEEE
Confidence 111 1235699999999985 12222222111 011112211000 001245799999996 35678887
Q ss_pred EE---CCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEec
Q 005046 215 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 286 (716)
Q Consensus 215 tV---G~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g~syV~DV 286 (716)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22222222222334677788764 5788999999997 7889999999999999999
Q ss_pred c
Q 005046 287 N 287 (716)
Q Consensus 287 N 287 (716)
|
T Consensus 269 n 269 (380)
T TIGR01142 269 S 269 (380)
T ss_pred e
Confidence 9
No 27
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.38 E-value=6.6e-12 Score=134.00 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=124.4
Q ss_pred HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEe
Q 005046 72 KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (716)
Q Consensus 72 kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (716)
.+..++++.|. |+-++..+..+++||..+.++|+++|||+|++..+.+... ....++.+.. -..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~-~~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLK-LESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHH-HHhcCCCEEEe
Confidence 46678888875 4456789999999999999999999999999998875310 0001111111 12356999999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE
Q 005046 151 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (716)
Q Consensus 151 pv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~----~~---vh 222 (716)
|++| ...+|++..... .|-+.+.. ....+..+|+||||+ |+++.|-++|. +. +.
T Consensus 178 P~~ggsS~GV~~v~~~~------el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNAE------QLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCHH------HHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 9997 344444333221 12222210 112345789999995 89999999973 21 11
Q ss_pred --EEeecCCCCCCc---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccCcc
Q 005046 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 223 --Ae~RKSPv~DG~---vrrN~~gke~--r~pv~Lt~e----Ek~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNgwS 290 (716)
.|-+ | .|. ++..-+.++. ..|..|+++ -+++|.++++++|.. ++++|++-+.|++||+|||.-+
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 1 232 2233332332 346667765 588999999999965 9999999988889999999664
No 28
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.38 E-value=1.6e-11 Score=132.65 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=132.4
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcCCcccCCc-hhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~iNdl-~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++...-.+-.+ .+..++++.+.+.++.- .+..+++||..+.++|+++|||||++..+.+... ..+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787776654333343 77889999998777776 6999999999999999999999999887764310 00111
Q ss_pred ceeeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+...---..++.|+|+||.++ +..+|.+-.... .|-+.+.. ..+.+..+|+||||+ |+++.
T Consensus 161 ~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~~----------a~~~~~~vlVEefI~--GrEi~ 222 (364)
T PRK14570 161 GIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIEE----------AFKYDLTVVIEKFIE--AREIE 222 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHHH----------HHhCCCCEEEECCcC--CEEEE
Confidence 111101123569999999995 434443322211 12111110 122355689999997 99999
Q ss_pred EEEECCceeEE---EeecCCCCCCcee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEe
Q 005046 213 VYTVGPEYAHA---EARKSPVVDGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLR 276 (716)
Q Consensus 213 vytVG~~~vhA---e~RKSPv~DG~vr-----rN~~-gke~--r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLR 276 (716)
|-++|+....+ ..... .++.|- ...+ |+.. .-|..|++ +-+++|.++++++|. .+|.||++-
T Consensus 223 v~Vlg~~~~~v~~~~Ei~~--~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 223 CSVIGNEQIKIFTPGEIVV--QDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred EEEECCCCceEeeeEEEEe--CCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999753221 11110 022221 1112 2222 22556775 678899999999999 699999988
Q ss_pred eC--CCcEEEeccCcc
Q 005046 277 CE--GRSYVCDVNGWS 290 (716)
Q Consensus 277 s~--g~syV~DVNgwS 290 (716)
+. |.+||+|||.-+
T Consensus 301 ~~~~g~~yvlEiNt~P 316 (364)
T PRK14570 301 EKDTGLIYLNEINTIP 316 (364)
T ss_pred ECCCCcEEEEEeeCCC
Confidence 63 669999999553
No 29
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.34 E-value=2.4e-11 Score=129.43 Aligned_cols=200 Identities=16% Similarity=0.239 Sum_probs=133.0
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++-..-++-.+ .+..++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877754444553 6777888877 5566889999999999999999999999999999887431
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+ + .-..++.|+|+||.+|. ..+|.+..... .|...+.. ..+.+..+|+||||+ |+++-
T Consensus 158 ~-~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~------eL~~a~~~----------a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-P--DAATLTYPVFVKPARSGSSFGVSKVNSAD------ELDYAIES----------ARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-h--hhhhcCCCEEEEeCCCCCCCCEEEeCCHH------HHHHHHHH----------HHhcCCcEEEECCcC--CEEEE
Confidence 0 1 11245699999999974 33333332211 12221110 122356789999996 88999
Q ss_pred EEEECCc---eeEEEeecCCCCCCceeec----CC-C---CceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEe
Q 005046 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD-G---KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 276 (716)
Q Consensus 213 vytVG~~---~vhAe~RKSPv~DG~vrrN----~~-g---ke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLR 276 (716)
|-++|.. .+....+..+ ..|.++.. .. | .+...|..|+++ -+++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888753 2222233322 13333311 11 1 123467778765 46899999999999 799999998
Q ss_pred eC-CCcEEEeccCc
Q 005046 277 CE-GRSYVCDVNGW 289 (716)
Q Consensus 277 s~-g~syV~DVNgw 289 (716)
+. |..||+|||--
T Consensus 296 ~~~g~~~llEINt~ 309 (343)
T PRK14568 296 QEDGTVVLNEVNTL 309 (343)
T ss_pred eCCCCEEEEEeeCC
Confidence 74 56889999943
No 30
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.30 E-value=1.1e-11 Score=133.98 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=124.3
Q ss_pred cH-HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCc
Q 005046 69 PL-EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (716)
Q Consensus 69 pl-~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kP 146 (716)
|| .....+++..+..+ -.+..+..+.+||..+.++|+++|||+|++..+... + +..+++. .++.|
T Consensus 38 ~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~---~------ea~~~~~----~~g~P 104 (379)
T PRK13790 38 PLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK---K------DALTYIE----NCELP 104 (379)
T ss_pred HHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH---H------HHHHHHH----hcCCC
Confidence 44 45667788888544 466788899999999999999999999998777622 0 1112222 34599
Q ss_pred EEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE--E
Q 005046 147 FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH--A 223 (716)
Q Consensus 147 fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vh--A 223 (716)
+|+||..|. ..++.+.....+ ....++.+- ....++.+|+||||.-..-.|-+++-|..++. +
T Consensus 105 vVvKp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~ 170 (379)
T PRK13790 105 VVVKKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDC 170 (379)
T ss_pred EEEEeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEeccc
Confidence 999999874 233333332211 111111110 01224579999999766778888887765432 2
Q ss_pred EeecCC-CCCCceeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---cCceee---EeEEeeCCCcEEEeccC
Q 005046 224 EARKSP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 224 e~RKSP-v~DG~vrrN~~gke~r~pv-~Lt~eE-----k~iA~ka~kaf---gq~VcG---fDLLRs~g~syV~DVNg 288 (716)
..++.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |..++| +|++-+.+++||+|||.
T Consensus 171 ~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 171 IAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 232221 2467666676443333344 467654 68899999998 545555 59988888999999996
No 31
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.21 E-value=6e-11 Score=126.94 Aligned_cols=198 Identities=18% Similarity=0.230 Sum_probs=123.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHH-hCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~-~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|++|+.... .+. .++..++..+..+..+.++..+++||....+.|. ++|||+|++..++.. ++
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~------------~~ 140 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSL------------EE 140 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCH------------HH
Confidence 48889887655 333 2345555667666788999999999999999985 789999999888732 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIK 212 (716)
..+.. ..++.|+|+||..|. ..++++.....+ ..+.++.... ..| ..+.+|+||||+ .|..+-
T Consensus 141 l~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~e---l~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 141 LRAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPED---IEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHHHH-HhcCCCEEEEeCCCcCCCCeEEECCHHH---HHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 22211 135699999999885 223333322211 1222222110 001 236799999997 366777
Q ss_pred EEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcC-ceeeEeEEeeCCCcEEE
Q 005046 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (716)
Q Consensus 213 vytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq-~VcGfDLLRs~g~syV~ 284 (716)
|.++.. ..... .| -+.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|+.-+++++||+
T Consensus 206 v~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFC----AP--IGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEe----cC--cccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 776632 22222 12 122222211122335777887654 489999999984 46779999988999999
Q ss_pred eccC
Q 005046 285 DVNG 288 (716)
Q Consensus 285 DVNg 288 (716)
|+|.
T Consensus 280 Einp 283 (395)
T PRK09288 280 EVSP 283 (395)
T ss_pred EecC
Confidence 9994
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.20 E-value=1.6e-10 Score=122.83 Aligned_cols=192 Identities=19% Similarity=0.279 Sum_probs=120.0
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
||++ ++=...+|. .++++++..+..+.++..+..+++||....+.|+++|||+|++..+... + +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDE---E------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCH---H------HHHHHH
Confidence 5654 433334444 3556777776677899999999999999999999999999999998732 1 111111
Q ss_pred eecCeeecCcEEEeecccc--CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
..++.|+|+||..|. ..++++...... ....++. . .+..+|+||||+- |..+-|.
T Consensus 130 ----~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~lvEe~I~~-~~E~sv~ 186 (352)
T TIGR01161 130 ----QELGFPVVLKARTGGYDGRGQYRIRNEAD---LPQAAKE--------------L-GDRECIVEEFVPF-ERELSVI 186 (352)
T ss_pred ----HHcCCCEEEEeCCCCCCCCCEEEECCHHH---HHHHHHh--------------c-CCCcEEEEecCCC-CeEEEEE
Confidence 124589999999863 233333222110 1111111 1 1347999999973 5677776
Q ss_pred EEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEe
Q 005046 215 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCD 285 (716)
Q Consensus 215 tVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~D 285 (716)
++. +++.. -|+..... ++-.......|..+++ +-+++|.++++++|. .++++|++.+.+| +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~~~-~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVENIH-QDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCcccEE-eCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 652 23221 23222211 1110111224555654 357889999999998 4999999998766 99999
Q ss_pred ccC
Q 005046 286 VNG 288 (716)
Q Consensus 286 VNg 288 (716)
||-
T Consensus 261 inp 263 (352)
T TIGR01161 261 LAP 263 (352)
T ss_pred ecC
Confidence 994
No 33
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.19 E-value=1.2e-10 Score=123.88 Aligned_cols=262 Identities=21% Similarity=0.351 Sum_probs=156.4
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhc-CC
Q 005046 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLR-KP 82 (716)
Q Consensus 4 ~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr-~p 82 (716)
.+..+||.|--.+|.+|==-+..+ -+.+...++++--. ++.|+++==-.||+|-=..+.--.....+|.+.. ..
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~-~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v 79 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFI-DLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEV 79 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHC-CCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTS
T ss_pred ccceEEEEEECHHHHHHhhHHHHH-HHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 467899988888886553333322 34444456665443 4566665545899998777643336667777763 34
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhC-------CCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG- 154 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~-------gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G- 154 (716)
.+|..++++..+.||...|++|++. +|.+|+.+++..+. .+ ..+.+.-. .+..|+|.||+-+
T Consensus 80 ~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~--~~------~~~~l~~a--gL~fPlI~KPlvA~ 149 (307)
T PF05770_consen 80 VVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA--ES------LPELLKEA--GLKFPLICKPLVAC 149 (307)
T ss_dssp EEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH--CC------HHHHHHCT--TS-SSEEEEESB-S
T ss_pred EEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH--HH------HHHHHHHC--CCcccEEeeehhhc
Confidence 6788899999999999888888764 78999999998541 11 11122223 3779999999984
Q ss_pred ---cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC-CC
Q 005046 155 ---DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PV 230 (716)
Q Consensus 155 ---edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKS-Pv 230 (716)
+.|...|-|... |-.. + +...++||||.-+|.=-||||||+.+ +...|+| |=
T Consensus 150 Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v-~~v~R~SLpn 205 (307)
T PF05770_consen 150 GSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKV-FVVKRPSLPN 205 (307)
T ss_dssp STSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEE-EEEEEE----
T ss_pred CCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEE-EEEECCCCCC
Confidence 578888888643 2221 1 22459999999999999999999774 5566666 21
Q ss_pred C-CCce-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHHHHhcCceeeEeEEeeCCC---cEEEec
Q 005046 231 V-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVCIAFRQAVCGFDLLRCEGR---SYVCDV 286 (716)
Q Consensus 231 ~-DG~v-------r----rN~~gke~-------r~pv~Lt--~eEk~iA~ka~kafgq~VcGfDLLRs~g~---syV~DV 286 (716)
+ .|+. . ++.+-... ...+... +.-+++|..+-+++|++..|||++|.++. .||+||
T Consensus 206 ~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 206 VSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp --SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEe
Confidence 1 1111 1 11110000 0112222 23478999999999999999999998644 789999
Q ss_pred cCccccccchhhHHHHHH
Q 005046 287 NGWSFVKNSYKYYDDAAC 304 (716)
Q Consensus 287 NgwSFVK~n~kYYddcA~ 304 (716)
|=|+=+|+-..|+..-.+
T Consensus 286 NyFPgY~~vp~f~~~l~~ 303 (307)
T PF05770_consen 286 NYFPGYKKVPDFESVLTD 303 (307)
T ss_dssp EES--TTTSCTHHHHHHH
T ss_pred ccCCCccCCCChHHHHHH
Confidence 999888888888765443
No 34
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.19 E-value=1.7e-11 Score=115.58 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=95.7
Q ss_pred HhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChH
Q 005046 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 171 (716)
Q Consensus 93 ~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 171 (716)
++.||....+++.++|||+|++..+.... +..+.+. .++.|+|+||..|. .-++++.-... -.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~gs~gv~~~~~~~---~l 64 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGSGSRGVFIVHSPE---EL 64 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-STTTT-EEESSHH---HH
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccccCCCEEEeCCHH---HH
Confidence 46799999999999999999999988331 1122222 12389999999995 12222211111 01
Q ss_pred HHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC-CCCCCceeecCCCCceeeeee-
Q 005046 172 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PVVDGVVMRNPDGKEVRYPVL- 249 (716)
Q Consensus 172 ~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKS-Pv~DG~vrrN~~gke~r~pv~- 249 (716)
.+.++.+.+.+. ..++.||+||||+...-.+.+++.+++.+.+...+. ....+.+..+ ....+...
T Consensus 65 ~~~~~~~~~~~~---------~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 132 (184)
T PF13535_consen 65 EAALAEIREDSP---------LGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSGG---VPTGYSVPS 132 (184)
T ss_dssp HHHHHHHHHHHS----------HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSSS---EEEEEEES-
T ss_pred HHHHHHHHHhcc---------cCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEecccccccccc---eeeeeeccc
Confidence 112222210000 236789999999965577888888888755443333 1001111111 22333332
Q ss_pred ---CCHHHHHHHHHHHHHhcC--ceeeEeEEeeCCC-cEEEeccC
Q 005046 250 ---LTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 250 ---Lt~eEk~iA~ka~kafgq--~VcGfDLLRs~g~-syV~DVNg 288 (716)
+.++-++.+.++++++|. .++++|++...+| .|++|||.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 133 EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp -CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 227788899999999997 9999999999977 58999995
No 35
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.16 E-value=1.4e-10 Score=126.11 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=124.2
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+ +...|+ ......++..+ |+.-++..+..+++||....++|+++|||+|++..+... + +..+
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA---E------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---H------HHHH
Confidence 466664 233444 34455666677 444577888999999999999999999999999887622 1 1112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
.+. .++.|+|+||..|. ..++++...... ....++.+-+. +.+. +..+.+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 24589999999874 123333222111 11122221110 0010 124579999999743344444
Q ss_pred EEECCceeE-EEeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc---C---ceeeEeEEeeCC
Q 005046 214 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 279 (716)
Q Consensus 214 ytVG~~~vh-Ae~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kafg---q---~VcGfDLLRs~g 279 (716)
++-|..+.. ...|. -...+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|+.-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 544444322 22221 1224666666766666666775 787543 36666777654 3 567889999999
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
|+||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999995
No 36
>PRK07206 hypothetical protein; Provisional
Probab=99.16 E-value=5.2e-10 Score=120.79 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=125.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|++|+..-.+.++...+ .+..++...|+..+...++||....+.|.++|||+|++..+... + +..+.
T Consensus 70 ~~d~vi~~~e~~~~~~a~l--~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~---~------e~~~~ 138 (416)
T PRK07206 70 GPEAIIAGAESGVELADRL--AEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADW---E------EAEAW 138 (416)
T ss_pred CCCEEEECCCccHHHHHHH--HHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCH---H------HHHHH
Confidence 3689999765555553333 23455555899999999999999999999999999999888622 1 11222
Q ss_pred eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
+.-.| -++.|+|+||++|. ..+|++...... ....++..-+..+.+. ..+..+|+||||+-.--.|-++
T Consensus 139 ~~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~ 208 (416)
T PRK07206 139 LRENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFV 208 (416)
T ss_pred HHhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEE
Confidence 22111 01249999999974 344444443321 2233333321111111 1246799999997544556667
Q ss_pred EECCceeE-EEee--cCCCCCCceeecCCCCceeee--eeCCHHHHHHHHHHHHHhcC--ceeeEeEEeeCCCcEEEecc
Q 005046 215 TVGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYP--VLLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 215 tVG~~~vh-Ae~R--KSPv~DG~vrrN~~gke~r~p--v~Lt~eEk~iA~ka~kafgq--~VcGfDLLRs~g~syV~DVN 287 (716)
+.+++... +..+ +.+..+|.+..+ ... ..| ....++-.++|.++++++|. .++.+|+..+.+|++|+|||
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 209 SLDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred EECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 76777443 2232 222223322111 001 011 11223455678999999998 57889999999999999999
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.07 E-value=1.7e-09 Score=116.47 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=121.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++ +|-....|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 57764 443344554 566677666 557799999999999999999999999999999988732 122
Q ss_pred eeecCeeecCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
... ...++.|+|+||..| . .+++++...... ....+... ..+.+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 111 113469999999984 3 344444332211 11122211 2457999999984 566776
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEecc
Q 005046 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (716)
Q Consensus 214 ytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~g~-syV~DVN 287 (716)
.++... .-+.+--|+.. .+.+|-.-.....|..+++ +-+++|.++++++|.. ++++|++.+.+| +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 655421 00111123211 1111100011223555554 5678899999999965 888999998666 9999999
Q ss_pred Cc
Q 005046 288 GW 289 (716)
Q Consensus 288 gw 289 (716)
-=
T Consensus 265 pR 266 (372)
T PRK06019 265 PR 266 (372)
T ss_pred CC
Confidence 63
No 38
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.06 E-value=3.5e-10 Score=136.88 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=130.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
..|.+|+.++.-.++ .....++..|. +.-|+.++..+++||....++|+++|||+|++..+... ++
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~------------ee 695 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV------------EE 695 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH------------HH
Confidence 368899988866666 45556667774 44578999999999999999999999999999988622 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-G~DIK 212 (716)
..... ..++.|+|+||..|. ..++++.+.... ....++..- ....++.+|+||||+-. .-+|-
T Consensus 696 ~~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~ee---L~~~~~~a~-----------~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 696 ALEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEE---LERYMREAV-----------KVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------hhCCCCcEEEEecCCCCEEEEEE
Confidence 22211 234599999998874 233333322110 111111110 11235679999999764 67888
Q ss_pred EEEECCce-eEE-EeecCCCCCCceeecCCCCceee---eeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeCCCcE
Q 005046 213 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (716)
Q Consensus 213 vytVG~~~-vhA-e~RKSPv~DG~vrrN~~gke~r~---pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLRs~g~sy 282 (716)
++.-|..+ +.+ +.+..+ ...|.|+... |..|+++ -+++|.++++++|. .++++|++.+.+++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 88766532 222 232221 2345454433 3567754 46688899999998 466799999999999
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999994
No 39
>PRK05586 biotin carboxylase; Validated
Probab=99.05 E-value=5.6e-10 Score=122.84 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=120.5
Q ss_pred CCcCeeeccccCCCcHH-HHHH-HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEE--EecCCCccccccc
Q 005046 55 PICDCLIAFYSSGYPLE-KAES-YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 129 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~-y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~--~~r~~~~~~~~~~ 129 (716)
..||+++|-| ||-.+ ..++ -++..+ ||+..+.++..+++||....++|+++|||+|++.. +. +
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~-~--------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIE-N--------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccC-C---------
Confidence 5789998865 33221 2222 234455 46789999999999999999999999999998753 22 1
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
.++....- ..++.|+|+||++|. .+++++.....+ ....++...+.+- ....++.+|+||||.. +
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~e---l~~a~~~~~~~~~-------~~~~~~~vivEe~i~g-~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEEE---LIKAFNTAKSEAK-------AAFGDDSMYIEKFIEN-P 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHHH---HHHHHHHHHHHHH-------HhcCCCeEEEEecCCC-C
Confidence 12222211 235699999999985 233333222111 1222222210000 0012467999999963 4
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCceee-EeEEeeCC
Q 005046 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVCG-FDLLRCEG 279 (716)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~kafgq~VcG-fDLLRs~g 279 (716)
+.+-|.+++. ++++.-.|... ..++|..--+.. |. .|++ +-+++|.++++++|..-++ +|++.+.+
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~ 281 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKD 281 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCC
Confidence 6788877763 45555333221 122221111111 22 4666 3457899999999976555 99998755
Q ss_pred C-cEEEeccC
Q 005046 280 R-SYVCDVNG 288 (716)
Q Consensus 280 ~-syV~DVNg 288 (716)
| .||+|||.
T Consensus 282 g~~~~iEvNp 291 (447)
T PRK05586 282 GNFYFMEMNT 291 (447)
T ss_pred CCEEEEEEEC
Confidence 5 79999994
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.04 E-value=9.4e-10 Score=130.86 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=128.7
Q ss_pred CcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccccccc
Q 005046 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (716)
Q Consensus 51 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~ 130 (716)
+..++.+|+++++.-.+.++ |-+-.+..+.+ -|+.++..+++||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~v~~--aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYFIEV--ASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhhHHH--HHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45566788888874434333 33333444533 3788999999999999999999999999999887331
Q ss_pred CccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCc
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
+..+.+. .++.|+|+||++|. ..++++...... ....+..+. . ...+.||+||||+-.--
T Consensus 133 e~~~~~~----~~~~PvVVKP~~g~gS~GV~~v~~~~e---l~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 133 VALDALD----GLTYPVVVKPRMGSGSVGVRLCASVAE---AAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred HHHHHHH----hCCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 1112221 34599999999985 122222221100 111111110 0 12678999999986556
Q ss_pred eeEEEEECCc-eeEEEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC--ceeeEeEEeeCCCcE
Q 005046 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRSY 282 (716)
Q Consensus 210 DIKvytVG~~-~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq--~VcGfDLLRs~g~sy 282 (716)
.|-+++.++. .+.+..++.......|.-+ +.-+|..++++ -.+++.++++++|. .++++|+..+.+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777777544 4555566542111122111 12357777764 45788999999998 578999999999999
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 270 liEIn~ 275 (887)
T PRK02186 270 IIEINP 275 (887)
T ss_pred EEEECC
Confidence 999994
No 41
>PRK08462 biotin carboxylase; Validated
Probab=99.03 E-value=4e-10 Score=123.47 Aligned_cols=202 Identities=18% Similarity=0.248 Sum_probs=118.1
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEE-ecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~-~r~~~~~~~~~~~e 131 (716)
.+|+++|-++ |.- ....+.++..|. +.-++.++..+++||....+.|.++|||+|++... -.+
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~----------- 142 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS----------- 142 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------
Confidence 4789998874 311 223345667774 66799999999999999999999999999886532 111
Q ss_pred ccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... -..++.|+|+||++|. ..++++-....+ ....|+... ++. .....++.+|+||||.. ++.
T Consensus 143 ~~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~~v~~~~e---L~~~~~~~~---~~~----~~~~~~~~vlvEe~i~g-~~e 210 (445)
T PRK08462 143 YEEAKKI-AKEIGYPVILKAAAGGGGRGMRVVEDESD---LENLYLAAE---SEA----LSAFGDGTMYMEKFINN-PRH 210 (445)
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH---HHH----HhccCCCcEEEeccCCC-CeE
Confidence 1111111 1235699999999985 122222221110 111111110 000 00113567999999965 556
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC-C
Q 005046 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-G 279 (716)
Q Consensus 211 IKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~-r~pv-~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~-g 279 (716)
+.|.++|. ++++.-.|...+ .+++ .+-. ..|. .|++ +-+++|.++++++|.. ++-||++-+. |
T Consensus 211 ~~v~v~~~~~g~~~~~g~~~~~~----~~~~--~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g 284 (445)
T PRK08462 211 IEVQILGDKHGNVIHVGERDCSL----QRRH--QKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNL 284 (445)
T ss_pred EEEEEEECCCCCEEEEEeccccc----eecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCC
Confidence 77777753 444442222211 0111 1110 0122 4554 5577899999999985 3349999875 5
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
++||+|||.
T Consensus 285 ~~~viEiNp 293 (445)
T PRK08462 285 DFYFMEMNT 293 (445)
T ss_pred CEEEEEEEC
Confidence 799999994
No 42
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.01 E-value=1.1e-09 Score=121.65 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.||+++|-| ||-- ..+.+.++..+ ||+-++.++..+++||....++|+++|||+|++....-. +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 489999855 3321 22345555666 456788999999999999999999999999887542101 11
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCc
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~ 209 (716)
++.... -..++.|+|+||.+|. -|-|+. +.+....-...|+--.. ....++.+++|+||.. +.
T Consensus 141 ~e~~~~-~~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~ 206 (472)
T PRK07178 141 DEALAE-AERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PK 206 (472)
T ss_pred HHHHHH-HHHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-Ce
Confidence 222221 1235699999999985 233332 22211100000000000 0012446889999954 66
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCc-eeeEeEEee-CCC
Q 005046 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 280 (716)
Q Consensus 210 DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~-VcGfDLLRs-~g~ 280 (716)
.+-|-++| ++++|...|... ..+++..-.|..-...|+++.+ ++|.++++++|.. ++.+|++-+ .|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 66665554 356666555331 1222322223221226777654 5999999999975 455999985 578
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999994
No 43
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.00 E-value=6.1e-10 Score=121.96 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=116.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~ 132 (716)
.||+++|.++--.--..+.+.++..+. |+.++.++..+++||....+.|+++|||+|++. .+. + .
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~-~-----------~ 141 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVD-D-----------E 141 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccC-C-----------H
Confidence 489999877321111234455566664 567999999999999999999999999999864 332 1 1
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||++|. ..++++-....+ ....++.....+ . ....+..+++||||+. +..+
T Consensus 142 ~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~iv~~~~e---l~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 142 EEALAI-AKEIGYPVIIKATAGGGGRGMRVVRTEAE---LEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHHH-HHHcCCCEEEEECCCCCCceEEEECCHHH---HHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 122211 1134599999999985 133333222111 112222211000 0 0012456899999964 4456
Q ss_pred EEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCC----HHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcE
Q 005046 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (716)
Q Consensus 212 KvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt----~eEk~iA~ka~kafgq~-VcGfDLLRs-~g~sy 282 (716)
-+-+++ +++++.-.|.... .+++..-.+..-+..|+ .+-+++|.++++++|.. ++.||++.+ +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 554443 3455543222110 01000000000011345 45567899999999975 344999988 67799
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999995
No 44
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.00 E-value=9.8e-10 Score=122.42 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=121.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++.|+ |-. ..+.+.++..+.. .-++.++..+++||....++|.++|||+|+........ +.
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~---------~~ 141 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE---------SM 141 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC---------CH
Confidence 4789998763 321 1234445566644 45889999999999999999999999997743321100 01
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||.+|. ..++++-..... ....++... ++ ......++.+++||||.. ++.+
T Consensus 142 ~~~~~~-~~~igyPvvvKP~~ggGg~Gv~iv~~~~e---L~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~i 209 (478)
T PRK08463 142 EEIKIF-ARKIGYPVILKASGGGGGRGIRVVHKEED---LENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRHI 209 (478)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCceEEeCCHHH---HHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeEE
Confidence 122111 1234699999999985 233333222111 111222110 00 001123567999999975 5666
Q ss_pred EEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCHHHH----HHHHHHHHHhcCceee-EeEEeeC-CCc
Q 005046 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GRS 281 (716)
Q Consensus 212 KvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~eEk----~iA~ka~kafgq~VcG-fDLLRs~-g~s 281 (716)
-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| +|++.+. |++
T Consensus 210 ev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~ 284 (478)
T PRK08463 210 EFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRF 284 (478)
T ss_pred EEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCE
Confidence 6656654 466666564321 11221111221 22 4777665 4899999999977666 9999875 779
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||||||.
T Consensus 285 y~iEiN~ 291 (478)
T PRK08463 285 YFMEMNT 291 (478)
T ss_pred EEEEEEC
Confidence 9999994
No 45
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.99 E-value=1.8e-09 Score=117.16 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=117.9
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+... .++ ..+.+.++..+ |+.-++..+..+++||....++|+++|||+|++..+... ++
T Consensus 65 id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~ 130 (423)
T TIGR00877 65 IDLAVIGPE--APLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EE 130 (423)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 677776433 333 44666777778 556688899999999999999999999999999888632 12
Q ss_pred eeeecCeeecCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
....- ..++.| +|+||..|. ..++++...... ....++..-+.+ +. ..+..+|+||||. |..+-
T Consensus 131 ~~~~~-~~~g~P~~VvKp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 131 ALSYI-QEKGAPAIVVKADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 22211 134589 999999874 123333222110 111222211100 10 1245799999997 45555
Q ss_pred EEEE--CCceeE-EEeecC-CCCCCceeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhc------CceeeEeEEe
Q 005046 213 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (716)
Q Consensus 213 vytV--G~~~vh-Ae~RKS-Pv~DG~vrrN~~gke~r~pv-~Lt~e-----Ek~iA~ka~kafg------q~VcGfDLLR 276 (716)
|.++ |..+.. ..+|.- ...+|..--++.+-+.-.|. .++++ .++++.++.++++ -.++.+|++.
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 5443 544332 222211 11233222222221222232 35543 2456666777774 3678899999
Q ss_pred eCCCcEEEeccC
Q 005046 277 CEGRSYVCDVNG 288 (716)
Q Consensus 277 s~g~syV~DVNg 288 (716)
+.+++||+|||.
T Consensus 277 t~~g~~viEin~ 288 (423)
T TIGR00877 277 TKEGPKVLEFNC 288 (423)
T ss_pred ECCCcEEEEEEc
Confidence 988899999994
No 46
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.99 E-value=2.6e-09 Score=116.65 Aligned_cols=209 Identities=11% Similarity=0.112 Sum_probs=117.3
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++++.++- .+. ..+...++..+. +.-++.++..+++||....+.|.++|||+|++...... +.++
T Consensus 75 id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~----------~~~e 143 (450)
T PRK06111 75 AEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLE----------DAEE 143 (450)
T ss_pred CCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcC----------CHHH
Confidence 4778876421 111 124455666664 45688999999999999999999999999987322111 0112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
..... ..++.|+|+||.+|. .+++++.....+ ....++....... ....++.+|+||||.- +..+-+
T Consensus 144 ~~~~~-~~~~~P~VvKP~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 144 AIAIA-RQIGYPVMLKASAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHHHH-HHhCCCEEEEeCCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEEEE
Confidence 11111 134699999999984 345544443321 2223333211000 0112567999999973 344555
Q ss_pred EEEC---CceeEEEeecCCCCCCceeecCCCCcee-eeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEecc
Q 005046 214 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVN 287 (716)
Q Consensus 214 ytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r-~pv~Lt~eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~DVN 287 (716)
.+++ ++.++.-.|..++.... ..-....... ..-.+..+-+++|.++++++|. .++.||++.+.++ +||+|||
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN 290 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSVQRRH-QKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMN 290 (450)
T ss_pred EEEEcCCCCEEEEEeecccccccc-cceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEE
Confidence 4443 33444433332211100 0000000000 0011233556889999999998 5777999988776 9999999
Q ss_pred Cc
Q 005046 288 GW 289 (716)
Q Consensus 288 gw 289 (716)
.=
T Consensus 291 ~R 292 (450)
T PRK06111 291 TR 292 (450)
T ss_pred CC
Confidence 53
No 47
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.98 E-value=1.1e-09 Score=123.09 Aligned_cols=203 Identities=16% Similarity=0.248 Sum_probs=123.0
Q ss_pred CcCeeeccccCCCcHH--HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|+++|.| ||..+ ...+.++..+ +|+-++.++..+++||....++|+++|||+|+.....-. +.
T Consensus 74 ~~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~----------~~ 141 (499)
T PRK08654 74 GADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE----------DI 141 (499)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCC----------CH
Confidence 368899876 33331 3445555666 456688999999999999999999999999877543101 11
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||.+|. ..++.+-.... -....++... ++-. ..+ .++.+++|+||.. ++.|
T Consensus 142 ~e~~~~-a~~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~~-~r~i 209 (499)
T PRK08654 142 EEAKEI-AEEIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLEK-PRHI 209 (499)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCCC-CcEE
Confidence 222221 1235699999999985 12222222111 0111222111 0000 001 2567999999964 5678
Q ss_pred EEEEECC---ceeEEEeecCCCCCCceeecCCCCcee-eee-eCCHH----HHHHHHHHHHHhcCceee-EeEEeeCCCc
Q 005046 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRS 281 (716)
Q Consensus 212 KvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r-~pv-~Lt~e----Ek~iA~ka~kafgq~VcG-fDLLRs~g~s 281 (716)
-|-++|+ +++|.-.|...+ -|+ |.+-+- .|. .|+++ -+++|.++++++|..=+| ||++-.++++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 7777764 466666664321 122 222111 121 36654 367899999999987666 9999988899
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||+|||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999995
No 48
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.96 E-value=6.7e-09 Score=125.81 Aligned_cols=199 Identities=18% Similarity=0.265 Sum_probs=129.0
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|.+|+.++.-.++ .+...++..+. +.-|+.++...+.||.+..++|+++|||+|++..+... ++
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee 695 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EE 695 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HH
Confidence 478999888755444 22233445564 44589999999999999999999999999999988732 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC-CCceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIK 212 (716)
....- ..++.|+|+||..|. ..++.+.+.... ....++... ....++.+|+||||+. ..-+|-
T Consensus 696 ~~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 696 AVEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 22111 134599999998864 233333332110 111122110 1124567999999974 456788
Q ss_pred EEEECCceeEEE-eecCCCCCCceeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 213 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 213 vytVG~~~vhAe-~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
+++.|++++... ... ..+.+.|.|... +|. .|++ +-+++|.++++++|. ..+.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888887765432 111 112345555543 332 5676 456788999999995 4555999999999999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
No 49
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.96 E-value=9.5e-10 Score=105.72 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHH
Q 005046 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 94 l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (716)
+.||+++++.|+++|||+|.++...... . . ..|+|+||..|. -|.|..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~-~----~~~~viKp~~G~-----------Gg~~i~- 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE---------------P-I----DGPWVIKPRDGA-----------GGEGIR- 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS------------------B-
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc---------------c-c----CCcEEEEeCCCC-----------CCCCeE-
Confidence 4699999999999999999555444110 0 1 489999999996 333332
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCC-CCceeecCCCCce-eeee
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEV-RYPV 248 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~---~vhAe~RKSPv~-DG~vrrN~~gke~-r~pv 248 (716)
.++.- ++... . .....|+||||+ |+-.-+.++... .+-+..|+-=.. ++.++ .+|++ ....
T Consensus 49 ~~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~~~~~~ 114 (161)
T PF02655_consen 49 IVDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGIVPADT 114 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEEES---
T ss_pred EECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccccccCC
Confidence 33322 11111 0 111129999997 555555444432 344445543100 11121 22222 2222
Q ss_pred eCCHHHHHHHHHHHHHh-cC-ceeeEeEEeeCCCcEEEeccC
Q 005046 249 LLTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 249 ~Lt~eEk~iA~ka~kaf-gq-~VcGfDLLRs~g~syV~DVNg 288 (716)
...++-.++|.+++++| |+ ..+|||++.+.+++||+|||-
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEINP 156 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEINP 156 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEES
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEcC
Confidence 34667778899999999 75 599999999999999999993
No 50
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.93 E-value=3.8e-09 Score=116.83 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=124.6
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEE-EEecCCCccccccccCcc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~-~~~r~~~~~~~~~~~e~~ 133 (716)
+|.+|+... -||. .....++..|..+ ..+.++-.+.+||....+.|.++|||+|++. .+... +
T Consensus 66 id~Vi~~~d--~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVGPD--PVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEECCC--hHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 788998643 3553 3355666667655 4889999999999999999999999998654 44311 1
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccc-cccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyQEFi~~~G~DIK 212 (716)
+....- ..++.|+|+||..+. .|-|+........+....++. ... ...++.+|+||||.-.--.|=
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~-~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRY-AIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHH-HHHHhCCCCcEEEEeecCCceEEEE
Confidence 111111 112489999999987 566665221111111111110 001 133567999999964445666
Q ss_pred EEEECCceeEE-Eeec-CCCCCCceeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhcC------ceeeEeEE
Q 005046 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (716)
Q Consensus 213 vytVG~~~vhA-e~RK-SPv~DG~vrrN~~gke~r~-----pv~Lt~eEk----~iA~ka~kafgq------~VcGfDLL 275 (716)
+|+-|..+..- ..+. -.+.||+.--|+.|=+.-. +-.|++++. +++.+++++++. .+..+++.
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 77766664222 1110 1123666555554333211 112776554 677788899994 45678999
Q ss_pred eeCCCcEEEeccC
Q 005046 276 RCEGRSYVCDVNG 288 (716)
Q Consensus 276 Rs~g~syV~DVNg 288 (716)
-+.+||||+|+|.
T Consensus 279 lt~~gp~ViE~n~ 291 (435)
T PRK06395 279 DTPNGVKVIEINA 291 (435)
T ss_pred EeCCCcEEEEEeC
Confidence 9999999999993
No 51
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.91 E-value=4.3e-09 Score=110.72 Aligned_cols=187 Identities=24% Similarity=0.286 Sum_probs=122.3
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
|+-..-.++.||....+++.+.|||+|+.++..... --.+....+.++..+.-...-..+||+||..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888899999999999999999999999955522110 000000111122222111111278999999997
Q ss_pred CCCChHHHHHhhhCCCccccccccc----ccccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~----~~r~~g--syIyQEFi~~---------~G-~DIKvytV----G~~~vhAe~ 225 (716)
+|.|+.++ ...+. ..++.+.. .....+ .||+||||.- .+ -+|||.|+ ++.+++|+.
T Consensus 85 -~G~Gi~~i-~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGILVI-DRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEEEE-EeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 55555422 21110 11111111 111222 8999999863 12 68999999 346789999
Q ss_pred ecCCCCCCceeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-cCcee
Q 005046 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (716)
Q Consensus 226 RKSPv~DG~vrrN~~gke~r~pv~Lt----------------------------------~eEk~iA~ka~kaf-gq~Vc 270 (716)
|-+. .|...-|.|.|++..+|-+. ++-.++|.++++.| ++.+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 77777788877655444321 35577889999887 57999
Q ss_pred eEeEEeeCCCcEEEeccCc
Q 005046 271 GFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 271 GfDLLRs~g~syV~DVNgw 289 (716)
|.|+.=+.+||+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999988999999976
No 52
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.88 E-value=3.7e-09 Score=116.35 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=113.8
Q ss_pred CcCeeecccc---CCCcHHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccc
Q 005046 56 ICDCLIAFYS---SGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s---~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~ 129 (716)
.||++++-++ ..- ...+.++..+ ||+.++.++..+++||....++|+++|||+|++. .+. +
T Consensus 74 ~id~I~pg~g~~se~~---~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~-~--------- 140 (449)
T TIGR00514 74 GADAIHPGYGFLSENA---NFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVE-D--------- 140 (449)
T ss_pred CCCEEEeCCCccccCH---HHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcC-C---------
Confidence 5899998762 221 1234455666 4677999999999999999999999999998864 232 1
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
.++....- ..++.|+|+||++|. ..++++..... -....++... +.- . ....++.+|+||||.. +
T Consensus 141 --~~e~~~~~-~~ig~PvvvKP~~g~gs~Gv~~v~~~~---el~~~~~~~~---~~~-~---~~~~~~~vlvEe~i~g-~ 206 (449)
T TIGR00514 141 --EEENVRIA-KRIGYPVIIKATAGGGGRGMRVVREPD---ELVKSISMTR---AEA-K---AAFGNDGVYIEKYIEN-P 206 (449)
T ss_pred --HHHHHHHH-HHhCCCEEEEeCCCCCCCccEEECCHH---HHHHHHHHHH---HHH-H---HhCCCCCEEEEECCCC-C
Confidence 11221111 234699999999985 12222211110 0111121110 000 0 0012456999999953 4
Q ss_pred ceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee-
Q 005046 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC- 277 (716)
Q Consensus 209 ~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs- 277 (716)
+.+-|-+++ ++.++...|-. .+.+. +.+-. .-+..|++ +-+++|.++++++|.. ++.||++-+
T Consensus 207 ~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~ 280 (449)
T TIGR00514 207 RHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK 280 (449)
T ss_pred eEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC
Confidence 555554444 34444432211 01110 11111 11124565 4456789999999974 455999987
Q ss_pred CCCcEEEeccC
Q 005046 278 EGRSYVCDVNG 288 (716)
Q Consensus 278 ~g~syV~DVNg 288 (716)
+|.+||+|||.
T Consensus 281 ~g~~~viEiNp 291 (449)
T TIGR00514 281 NGEFYFMEMNT 291 (449)
T ss_pred CCCEEEEEEEC
Confidence 56689999993
No 53
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.86 E-value=1.8e-08 Score=108.41 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=147.2
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccC--CchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iN--dl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|+++|.+..-+ |.+-.+-|+..|.-++= +.++..++.||...|+.++++|||+|.+..++.- ..|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4689999888887 88888889998876554 6889999999999999999999999999998732 1222222
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc------------ccCcceEEe
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~------------r~~gsyIyQ 201 (716)
..+...| .|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|++
T Consensus 139 ~~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 2233444 88999999998 34444433333322233344333222 135668999
Q ss_pred eccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEe-eCC
Q 005046 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (716)
Q Consensus 202 EFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLR-s~g 279 (716)
||++-.---|=|.+-++++++|-.|+= . |.+..+.-.++--++|.++|++||++ +.+|..-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 999986666667777799998888865 1 25677888899999999999999996 56899988 678
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
.|+++|+|-
T Consensus 271 ~p~LLEINp 279 (329)
T PF15632_consen 271 NPKLLEINP 279 (329)
T ss_pred CEEEEEeCC
Confidence 899999994
No 54
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.84 E-value=5.2e-09 Score=127.45 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=120.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|+++|-|+ |-- ....+.++..+ +|+-++.++..+++||..+.+++.++|||+|+.....-. +.
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~----------~~ 141 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPE----------TM 141 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcC----------CH
Confidence 4688988653 321 12234445555 566788999999999999999999999999986532101 01
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccc---cccccccCcceEEeeccCCCCc
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p---~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
++.... ...++.|+|+||..|. -|.|++ .++....-...++- +....-.++.+++||||.. ++
T Consensus 142 eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~r 207 (1143)
T TIGR01235 142 EEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PR 207 (1143)
T ss_pred HHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-Ce
Confidence 111111 1235699999999985 223332 22211100000000 0000012567899999953 67
Q ss_pred eeEEEEECCc---eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC-CC
Q 005046 210 DVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-GR 280 (716)
Q Consensus 210 DIKvytVG~~---~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~-g~ 280 (716)
.|.|-++|+. ++|...|-..+. ||+..--|..-...|++ +-.++|.++++++|.. ++.||++... |.
T Consensus 208 eIeVqVlgD~~G~vv~l~eRdcsvq----rr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~ 283 (1143)
T TIGR01235 208 HIEVQLLGDKHGNVVHLFERDCSVQ----RRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGK 283 (1143)
T ss_pred EEEEEEEEeCCCCEEEEEecccccc----ccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCc
Confidence 7888888654 677776744211 11111112221124555 4557899999999954 6669999875 57
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+|++|||-
T Consensus 284 ~yfIEVNP 291 (1143)
T TIGR01235 284 FYFIEVNP 291 (1143)
T ss_pred EEEEEeec
Confidence 99999993
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.83 E-value=1.4e-08 Score=123.39 Aligned_cols=196 Identities=13% Similarity=0.183 Sum_probs=124.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|.+|+-++...++ .+..-++..+ |+.-++.++...+.||.+..++|+++|||+|++..+... ++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HH
Confidence 378898877665433 2223334455 455688999999999999999999999999999988722 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
.... -..++.|+|+||..|. ..+++|.+... ...+.++.. ...++.+|+||||.-..-+|-+
T Consensus 697 ~~~~-~~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAF-AKRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHH-HHhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 2221 1234699999999874 23333333221 111222211 1235679999999533455555
Q ss_pred EEECCceeE-E-EeecCCCCCCceeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 214 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 214 ytVG~~~vh-A-e~RKSPv~DG~vrrN~~gke~r---~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
+.=|..+.. + +.+..+ ...|.|... .|..|++ +-+++|.++++++|. .++.||++...+++||
T Consensus 760 i~dg~~v~i~~i~e~~e~-------~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIEQ-------AGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEeec-------cCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 555554322 2 222111 223545432 2456775 456788999999984 4777999999999999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||-
T Consensus 833 iEiNp 837 (1068)
T PRK12815 833 LEVNP 837 (1068)
T ss_pred EEEeC
Confidence 99994
No 56
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.82 E-value=1e-07 Score=112.57 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=129.1
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++.+-..-++-. -....++++.+ ||+=.+..+..++.||..+-++|+++|||+|++..+.+..... +.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~------~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKR------EPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhccc------ChH
Confidence 478776654322223 36777888888 5666789999999999999999999999999998887431000 001
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
..+.-.-..++.|+|+||.++- ..+|.+-... ..|-+.+.. ....+..+|+|||+.. |+.+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~------~el~~a~~~----------a~~~~~~vlVEe~i~~-grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNV------EELRDKISE----------AFLYDTDVFVEESRLG-SREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCH------HHHHHHHHH----------HHhcCCcEEEEeccCC-CEEEE
Confidence 1111011235699999999973 3333322211 112222210 1223556899999863 89999
Q ss_pred EEEECCce---eEE--EeecCCCCCCc--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEE
Q 005046 213 VYTVGPEY---AHA--EARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 213 vytVG~~~---vhA--e~RKSPv~DG~--vrrN~--~gk---e~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLL 275 (716)
|-++|... +.+ ..+.. ..+- +..+- +|+ ...+|..|++ +-+++|.++.+++|. .+|.+|++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998752 111 22222 1121 11122 233 2335667775 456788999999995 47789999
Q ss_pred eeC-CCcEEEeccCc
Q 005046 276 RCE-GRSYVCDVNGW 289 (716)
Q Consensus 276 Rs~-g~syV~DVNgw 289 (716)
-+. |.+||+|||--
T Consensus 741 v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 741 LDEEGNFWLSEMNPI 755 (809)
T ss_pred EcCCCCEEEEEeeCC
Confidence 875 66999999944
No 57
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.81 E-value=1.9e-08 Score=115.08 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=123.2
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
||++ ++-....+.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dvI-t~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDVL-TVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCEE-EEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 5654 4444455543 458888888767799999999999999999999999999999888622 1111
Q ss_pred eecCeeecCcEEEeecccc--CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
. ....++.|+|+||.+|. ..++++-..... ....++... ..+..+|.|+||+ ....+-|.
T Consensus 150 ~-~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 K-AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H-HHHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 11235699999999753 345554433221 222222221 1234689999994 23667777
Q ss_pred EECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEeccC
Q 005046 215 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 215 tVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~g~-syV~DVNg 288 (716)
+++..- -+...-|+.+.. .+|........|..|++ +-+++|.++++++|.. ++.+|++-+.+| .||+|||.
T Consensus 212 v~r~~~--G~i~~~p~~E~~-~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSRD--GSTRCYPVVETI-HKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECCC--CCEEEecCcccE-EECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 664210 011113433221 22211112235667776 4567789999999743 557898888665 68999995
Q ss_pred cc
Q 005046 289 WS 290 (716)
Q Consensus 289 wS 290 (716)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
No 58
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.80 E-value=3.4e-08 Score=109.43 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=115.8
Q ss_pred CCcH-HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeec
Q 005046 67 GYPL-EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (716)
Q Consensus 67 gfpl-~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~ 144 (716)
-+|+ ..+.++++..|.. .-.+..+..+.+||..+-++|+++|||+|++..+... + +...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~---~------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP---A------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---H------HHHHHHH----HcC
Confidence 3555 5667777777655 4478889999999999999999999999998877522 1 1122222 345
Q ss_pred CcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc--ccc-ccCcceEEeeccCCCCceeEEEEE--CCc
Q 005046 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDVKVYTV--GPE 219 (716)
Q Consensus 145 kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~--~~~-r~~gsyIyQEFi~~~G~DIKvytV--G~~ 219 (716)
.|+|+||..+. .|-|+. +.+........+..-. ..+ ..+..+|+||||. |..+-|.++ |..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 89999999764 333432 2211110000000000 011 1245799999997 445555332 333
Q ss_pred eeEE-E-eecCCCCCCceeecCCCCceeeeee-CCHHHHH-HHHH-------HHHHhcCceee---EeEEee--CCCcEE
Q 005046 220 YAHA-E-ARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MARE-------VCIAFRQAVCG---FDLLRC--EGRSYV 283 (716)
Q Consensus 220 ~vhA-e-~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~-iA~k-------a~kafgq~VcG---fDLLRs--~g~syV 283 (716)
+... + .....+.||+..-|+.|-+.-.|.. ++++..+ ++.. +.++.|....| +|++-+ +|++||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3321 1 1233456888888887655444553 7775444 3333 33466776555 676665 466999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|+|.
T Consensus 284 LE~N~ 288 (434)
T PLN02257 284 LEYNV 288 (434)
T ss_pred EEEEC
Confidence 99994
No 59
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.78 E-value=1.6e-08 Score=112.46 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=117.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~ 130 (716)
.+|+++|.|+ |-. ....+.++..+ +|+-++.++..+++||....++|.++|||+|++. .+. +
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~-~---------- 143 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVA-S---------- 143 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcC-C----------
Confidence 4688988662 321 12234444555 5778899999999999999999999999998875 332 1
Q ss_pred CccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... ...++.|+|+||..|. ....++.-.+.- .....|+... ++-. ..+ .++.+++||||+. |+.
T Consensus 144 -~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 1222221 1235699999999985 122222211110 0111222110 0000 011 2567899999976 677
Q ss_pred eEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC--CCc
Q 005046 211 VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GRS 281 (716)
Q Consensus 211 IKvytVG~~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~--g~s 281 (716)
|-|-++|+. ++|.-.|..-+ . |++..--+..-+..|++ +-+++|.++++++|.. ++.||++-.. |.+
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~~-~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~ 287 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECSL-Q---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEF 287 (467)
T ss_pred EEEEEEeCCCcEEEEEEeeccc-c---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCE
Confidence 777777653 45554443211 0 01100000011123554 5567899999999986 3458998763 568
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||+|||.
T Consensus 288 ~~iEvNp 294 (467)
T PRK12833 288 YFIEMNT 294 (467)
T ss_pred EEEEEEC
Confidence 9999995
No 60
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.73 E-value=2.6e-08 Score=99.98 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=100.5
Q ss_pred HHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCC
Q 005046 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (716)
Q Consensus 103 iL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~ 181 (716)
+|+++|||||+++++.+... ..+.+.-.-..++.|+|+||..+ +..+|.+-.. ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~---------~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~------~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNED---------DSDSIEKILEDLGFPLFVKPASEGSSIGISKVHN------EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSH---------HHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESS------HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEecccc---------cchhHHHHHhhcCCCEEEEECCCCccEEEEEcCC------HHHHHHHHHH-
Confidence 58899999999999996521 11111111234569999999985 5444443221 1223333321
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCCceee------cCCCCceeeeeeCCH
Q 005046 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMR------NPDGKEVRYPVLLTP 252 (716)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrr------N~~gke~r~pv~Lt~ 252 (716)
..+-+..+|+|||| .|+++-|-++| ..+...+....+ ++-+.- +........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12345678999999 79999999999 666666666664 333321 113334455666765
Q ss_pred ----HHHHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEeccCcccc
Q 005046 253 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWSFV 292 (716)
Q Consensus 253 ----eEk~iA~ka~kafgq-~VcGfDLLRs-~g~syV~DVNgwSFV 292 (716)
+-+++|.+|.+++|. .+|=||+.=+ +|.+||+|||.-+=.
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGl 177 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGL 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcccc
Confidence 456789999999998 7999999877 567999999976433
No 61
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=98.70 E-value=2.2e-08 Score=100.77 Aligned_cols=85 Identities=32% Similarity=0.428 Sum_probs=57.9
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccCCCCc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~legeLtP 551 (716)
|+||+. ++|+.||+ . |+. ++.+......++.|+||+..||+.||++|+.||+.-.+. .|
T Consensus 17 ~~LT~~G~~q~~~~G~~lr~-~---------y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~~-~~ 81 (242)
T cd07061 17 GELTPFGRQQAFELGRYFRQ-R---------YGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDGW-QP 81 (242)
T ss_pred hhhhHHHHHHHHHHHHHHHH-H---------HHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCccc-CC
Confidence 899988 99999999 4 532 222244567899999999999999999999999986641 23
Q ss_pred ceeeeEecCCcccCCCCcchHHHHHHHHHHHH
Q 005046 552 ILVSLVSKDSSMLDGLDNASIEMEEAKARLNE 583 (716)
Q Consensus 552 ilv~~V~kd~~~ld~~~~a~~~m~~vK~~L~~ 583 (716)
+-+..+..+ .+ ++...++-+.-....
T Consensus 82 ~~i~~~~~~---~~---~~~~~~d~~~~~~~~ 107 (242)
T cd07061 82 IAVHTIPEE---ED---DVSNLFDLCAYETVA 107 (242)
T ss_pred CceEEecCC---Cc---hHHHHHHHCHHHHHh
Confidence 333434322 11 444455555444443
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.70 E-value=5.3e-08 Score=118.24 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=120.4
Q ss_pred CcCeeeccccCCCcHHHHHH-----HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAES-----YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~-----y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++.++....+.-++. .++..+ ++.-.+.++..+++||....+.|.++|||+|++..++..
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 152 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--------- 152 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH---------
Confidence 47999998775545533321 355666 455689999999999999999999999999999988732
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
++.... -..++.|+|+||..|. ..++++...... ...+++.. + .....+.+|+||||+-.
T Consensus 153 ---~e~~~~-~~~ig~PvVVKP~~g~gg~Gv~iv~~~ee---L~~a~~~~------~-----~~s~~~~vlvEe~I~G~- 213 (1066)
T PRK05294 153 ---EEALEV-AEEIGYPVIIRPSFTLGGTGGGIAYNEEE---LEEIVERG------L-----DLSPVTEVLIEESLLGW- 213 (1066)
T ss_pred ---HHHHHH-HHHcCCCeEEEcCCCCCCCCeEEECCHHH---HHHHHHHH------H-----hhCCCCeEEEEEcccCc-
Confidence 122111 1234589999999874 122332221110 11111100 0 11124579999999631
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhcCc--eeeEeE
Q 005046 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFDL 274 (716)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~eE----k~iA~ka~kafgq~--VcGfDL 274 (716)
..+=+-++.+ +.+ ..+.+..| .| .|.|++. .|. .|++++ +++|.++++++|.. +|.||+
T Consensus 214 ~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 214 KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 2333333321 111 12333333 12 3444442 233 577644 58999999999997 999999
Q ss_pred Eee-C-CCcEEEecc
Q 005046 275 LRC-E-GRSYVCDVN 287 (716)
Q Consensus 275 LRs-~-g~syV~DVN 287 (716)
.-+ . |..||+|||
T Consensus 287 ~~~~~~g~~~viEiN 301 (1066)
T PRK05294 287 ALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEECCCCcEEEEEee
Confidence 987 3 558999999
No 63
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.69 E-value=8.1e-08 Score=100.10 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
.+-+|++.-|+ +..+.+.+-|||++|..|+.+ +++|.|.... + - .+-+|+||
T Consensus 94 i~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~-~------------------~----~~k~ViKp 145 (307)
T COG1821 94 IYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWA-E------------------E----PKKYVIKP 145 (307)
T ss_pred HHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCccccc-c------------------C----CceEEecc
Confidence 45567666665 578999999999999999999 9999997532 1 1 26699999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC--------CCceeEEEEECCceeEE
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT--------GGTDVKVYTVGPEYAHA 223 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~--------~G~DIKvytVG~~~vhA 223 (716)
.+|. +|.|.. | +.-.| ++ .|.||||+- .|+++.+.+|...++.-
T Consensus 146 ~dgC-----------gge~i~--~-------~~~~p-------d~-~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~ 197 (307)
T COG1821 146 ADGC-----------GGEGIL--F-------GRDFP-------DI-EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIF 197 (307)
T ss_pred cccC-----------Ccceee--c-------cCCCc-------ch-hhHHHhcCCcceEEEEecCCccccceechhhhhh
Confidence 9997 555542 1 11122 23 799999974 37777777776654432
Q ss_pred EeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhc--CceeeEeEEeeCCCcEEEeccCc
Q 005046 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 224 e~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafg--q~VcGfDLLRs~g~syV~DVNgw 289 (716)
+..+.--.||..+++.+|..+-.+.|+++++-++ -...||||.-+ +.|||+|||.-
T Consensus 198 ---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINpR 255 (307)
T COG1821 198 ---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINPR 255 (307)
T ss_pred ---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CCcEEEEecCC
Confidence 4445566789999999999999999999999998 35789999999 99999999963
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.67 E-value=5e-08 Score=119.24 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=117.9
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEE--EecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~--~~r~~~~~~~~~~~ 130 (716)
.+|++++.| ||-- ....+.++..+ +|+-++.++..+++||....++|.++|||+|+... +. +
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~-s---------- 144 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPID-D---------- 144 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCC-C----------
Confidence 478999865 3221 12233334455 45678999999999999999999999999977653 22 1
Q ss_pred CccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCc
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
.++.... ...++.|+|+||..|. ..++.+..... -....|+... ++ . .....++.+++||||+. ++
T Consensus 145 -~eea~~~-a~~iGyPvVVKP~~GgGGrGv~vV~~~e---EL~~a~~~a~---~e-a---~~~fg~~~vlVEefI~g-~~ 211 (1146)
T PRK12999 145 -IEEALEF-AEEIGYPIMLKASAGGGGRGMRIVRSEE---ELEEAFERAK---RE-A---KAAFGNDEVYLEKYVEN-PR 211 (1146)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCCCCCCeEEeCCHH---HHHHHHHHHH---HH-H---HhhcCCCcEEEecCCCC-Ce
Confidence 1222221 1235699999999985 12222222111 0111222110 00 0 00012567999999974 56
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCC--ceeeeeeCCHH----HHHHHHHHHHHhcCce-eeEeEEeeCC
Q 005046 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPN----EKQMAREVCIAFRQAV-CGFDLLRCEG 279 (716)
Q Consensus 210 DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gk--e~r~pv~Lt~e----Ek~iA~ka~kafgq~V-cGfDLLRs~g 279 (716)
.|-|-++| ++++|--.|-..+ .|| |.+ |..-...|+++ -.++|.++++++|..= +.+|++.+.+
T Consensus 212 ~ieVqvl~D~~G~vv~l~erdcsv----qrr--~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d 285 (1146)
T PRK12999 212 HIEVQILGDKHGNVVHLYERDCSV----QRR--HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD 285 (1146)
T ss_pred EEEEEEEEECCCCEEEEEccccce----eec--CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC
Confidence 67776665 3556654443321 112 222 11111256654 4558999999999854 4499998754
Q ss_pred -CcEEEeccC
Q 005046 280 -RSYVCDVNG 288 (716)
Q Consensus 280 -~syV~DVNg 288 (716)
++|++|||-
T Consensus 286 g~~yfIEINp 295 (1146)
T PRK12999 286 GNFYFIEVNP 295 (1146)
T ss_pred CCEEEEEEEC
Confidence 799999994
No 65
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=1.4e-07 Score=101.20 Aligned_cols=239 Identities=18% Similarity=0.232 Sum_probs=153.3
Q ss_pred HHHHHHHhhcCCceEEEEeCc----ceeecCCCc--ccCCcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHh
Q 005046 23 MGQILDRLQAFGEFEVIHFGD----KVILEDPIE--KWPICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLL 94 (716)
Q Consensus 23 m~~IL~rL~~~g~feiiiF~d----~vIL~e~ve--~wP~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l 94 (716)
.+++++-|...+ +++.-|.- .+.+++.+. ..-.+|++++.-.-.+-. ..+..|++..+ ||+.....+=...
T Consensus 23 a~~v~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~ 101 (317)
T COG1181 23 AKAVLRALKGFG-YDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGA 101 (317)
T ss_pred HHHHHHHHhhcC-ceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhc
Confidence 677777777643 44433322 223333111 112344433321111112 36778888888 9999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (716)
-|+..+-++++..|+|++..+.+.++.. .+..++-.-..++.|+++||...- --+.+.-.++.|-|-
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~v~~~~d~~--- 168 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFVKPAREG-SSVGRSPVNVEGDLQ--- 168 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEEEcCCcc-ceeeEEEeeeccchH---
Confidence 9999999999999999999999997621 111111122235699999998852 123333333333332
Q ss_pred HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce---eEEEeecCCCCCC-ce----eecCCCCceee
Q 005046 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY---AHAEARKSPVVDG-VV----MRNPDGKEVRY 246 (716)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~---vhAe~RKSPv~DG-~v----rrN~~gke~r~ 246 (716)
+..+. ..+.+...+.|+|+. |+.|.|=+.|... +..--+.-| +| .| ..|++.|+..+
T Consensus 169 --------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l~~~eI~~--~~~~fydye~Ky~~~gg~~~ 233 (317)
T COG1181 169 --------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDYEEQALPLGEIPP--KGEEFYDYEAKYLSTGGAQY 233 (317)
T ss_pred --------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcccceecCceEEec--CCCeEEeeeccccCCCCcee
Confidence 21111 456788889999999 9999999999865 221122222 43 33 26788444333
Q ss_pred ee--eCCH----HHHHHHHHHHHHhc-CceeeEeEEeeC--CCcEEEeccCcc
Q 005046 247 PV--LLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 290 (716)
Q Consensus 247 pv--~Lt~----eEk~iA~ka~kafg-q~VcGfDLLRs~--g~syV~DVNgwS 290 (716)
.+ .||+ +-+++|.+|.+|+| ..+||+|++-.. |..|++|||.-+
T Consensus 234 ~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 234 DIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 22 3665 56889999999999 999999999988 789999999654
No 66
>PLN02735 carbamoyl-phosphate synthase
Probab=98.65 E-value=2.2e-07 Score=113.41 Aligned_cols=198 Identities=14% Similarity=0.221 Sum_probs=123.2
Q ss_pred CcCeeeccccCCCcHHHH---HHHHHhc----------CCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCC
Q 005046 56 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~ 122 (716)
.+|++|+-|+...|+.-| .+++... =++...+.++..++.||.+.-++|+++|||+|++..+...
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~-- 726 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSE-- 726 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCH--
Confidence 379999999877776322 2223222 2467789999999999999999999999999999877621
Q ss_pred ccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEe
Q 005046 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 201 (716)
Q Consensus 123 ~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQ 201 (716)
++.... -..++.|+|+||..|. ..++.|.+...+ ....++... ....++.+|+|
T Consensus 727 ----------eea~~~-a~~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a~-----------~~~~~~~vlVE 781 (1102)
T PLN02735 727 ----------ADALAI-AKRIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETAV-----------EVDPERPVLVD 781 (1102)
T ss_pred ----------HHHHHH-HHhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------HhcCCCCEEEE
Confidence 222221 1235699999999974 233333332211 111111110 11235579999
Q ss_pred eccCCCCceeEEEEECC---ceeE--EEeecCCCCCCceeecCCCCceeeee---eCCHHH----HHHHHHHHHHhcC-c
Q 005046 202 EFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-A 268 (716)
Q Consensus 202 EFi~~~G~DIKvytVG~---~~vh--Ae~RKSPv~DG~vrrN~~gke~r~pv---~Lt~eE----k~iA~ka~kafgq-~ 268 (716)
+||.. |.-+=|-++++ +++. .+.+.- +...|-|+....+ .|+++. +++|.++++++|. .
T Consensus 782 efI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G 853 (1102)
T PLN02735 782 KYLSD-ATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCG 853 (1102)
T ss_pred EecCC-cEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 99953 66666666653 2221 111111 1223545443333 577554 5679999999985 4
Q ss_pred eeeEeEEee-CCCcEEEeccC
Q 005046 269 VCGFDLLRC-EGRSYVCDVNG 288 (716)
Q Consensus 269 VcGfDLLRs-~g~syV~DVNg 288 (716)
++.+|++-+ +|++||+|||-
T Consensus 854 ~~~vqf~v~~dg~~yviEiNp 874 (1102)
T PLN02735 854 LMNCQYAITPSGEVYIIEANP 874 (1102)
T ss_pred eeeEEEEEcCCCcEEEEEEeC
Confidence 777999985 57799999994
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.62 E-value=1.6e-07 Score=114.58 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=125.1
Q ss_pred CcCeeeccccCCCcHHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++-++...++.-++ .-++..+ |+.-++..+..++.||...-++|.++|||+|++..+... +
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~---e----- 169 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL---D----- 169 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---H-----
Confidence 6899999877555553233 2345666 577889999999999999999999999999999888622 0
Q ss_pred cCccceeeecCeeec-CcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC
Q 005046 130 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 207 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~ 207 (716)
+..+.+. .++ .|+|+||..|. ..+++|-+.... ....++..- ....++.+|+||||.-
T Consensus 170 -ea~~~~~----~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a~-----------~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 170 -ECFEIAE----DIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAGL-----------AASITSQVLVEKSLLG- 229 (1102)
T ss_pred -HHHHHHH----HhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEecCC-
Confidence 1111121 233 89999999853 234444332211 111121110 1124667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC--ceeeEe
Q 005046 208 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 273 (716)
Q Consensus 208 G~DIKvytVG~---~~--vhAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~kafgq--~VcGfD 273 (716)
..-+=|=++++ +. +..+.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24455555543 22 233444444 23 2444432 244 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecc
Q 005046 274 LLRC--EGRSYVCDVN 287 (716)
Q Consensus 274 LLRs--~g~syV~DVN 287 (716)
+.-+ +|..||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9876 4668999999
No 68
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.61 E-value=1.5e-07 Score=94.83 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=104.0
Q ss_pred CCchhhhHhhhHHHHH----HHHH---hCCCCC-CcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCc
Q 005046 86 NELEPQHLLHDRRKVY----EQLE---KYGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~l----qiL~---~~gIP~-P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedH 157 (716)
|+|.+.+.+.||--++ +|-. ....|+ +.|.+-+ ..+.+.-- ..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn-------------h~em~s~~----~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN-------------HREMLSAP----RFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS-------------GGGGCS-S----SSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC-------------hhhhccCC----CCCEEEEEcccc--
Confidence 8899999999993222 2222 334443 3333333 23333322 379999986654
Q ss_pred ceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCcee
Q 005046 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vr 236 (716)
+|-|-. |+.|....-|-. ..+. .+.=+-.|-||.. --||||--||++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GKv----kv~n~~~~qDi~-sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGKV----KVDNQQDFQDIA-SLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTEE----EE-SHHHHHHHH-HHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeEE----EEccHHHHHHHH-HHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 565643 444443222111 1223 3333456778855 6899999999997 89999995 99999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeC-CCcEEEeccCccc
Q 005046 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCE-GRSYVCDVNGWSF 291 (716)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk~iA~ka~kaf-gq~VcGfDLLRs~-g~syV~DVNgwSF 291 (716)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-++ |+-|++|||+-|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 4566778999999999999999999 9999999999998 5588999998543
No 69
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.61 E-value=7.8e-08 Score=108.25 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEe
Q 005046 73 AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEK 150 (716)
Q Consensus 73 ai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeK 150 (716)
..+.++..| ||+.-+..+..++.||..+.++++++|||+|++..+..+. .++... +....++.|+|+|
T Consensus 118 iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVVK 187 (493)
T PRK06524 118 TEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVVQ 187 (493)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEEE
Confidence 334444555 5669999999999999999999999999999998764221 111111 1111367999999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee--EEEEECC-ceeEEEee
Q 005046 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV--KVYTVGP-EYAHAEAR 226 (716)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI--KvytVG~-~~vhAe~R 226 (716)
|..|. .+++++...... ...++.++ -.+..+++|+||. |.-+ =|++-+. .+++...+
T Consensus 188 P~~GGSS~GV~~Vkn~eE---Le~a~~~~--------------~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~ 248 (493)
T PRK06524 188 TPYGDSGSTTFFVRGQRD---WDKYAGGI--------------VGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMT 248 (493)
T ss_pred ECCCCCCcCEEEeCCHHH---HHHHHHHh--------------cCCCCEEEEeccC--cEEEEEEEEEeCCCCEEecccc
Confidence 99874 344444333211 11111111 1124478899995 4332 2343332 22221111
Q ss_pred cCCCCCCceeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhc----CceeeEeEEee--CCCcEEEecc
Q 005046 227 KSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (716)
Q Consensus 227 KSPv~DG~vrrN~~gke---~r~pv~Lt~----eEk~iA~ka~kafg----q~VcGfDLLRs--~g~syV~DVN 287 (716)
. ++-..++. .-.+|. ...|..|++ +-+++|.+++++++ ..+++||++-+ +|+.|++|||
T Consensus 249 e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 249 S-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred c-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 1 11000121 011222 234778888 77789999999984 68899999998 4679999999
No 70
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.57 E-value=2.1e-07 Score=113.02 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=119.2
Q ss_pred CcCeeeccccCCCcHHHH-----HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++.++-..++.-+ ..-++..|. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 479999988754444212 224556674 55588999999999999999999999999999888622
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-cc--ccCcceEEeeccCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~--r~~gsyIyQEFi~~ 206 (716)
++.... ...++.|+|+||..|. .|.|+. + +.|.. ++..-+. .. ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 222221 1235699999999874 233332 1 11111 1110000 01 12357899999974
Q ss_pred CCceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCce--eeee-eCCHHH----HHHHHHHHHHhcCc-eeeEe
Q 005046 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNE----KQMAREVCIAFRQA-VCGFD 273 (716)
Q Consensus 207 ~G~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~--r~pv-~Lt~eE----k~iA~ka~kafgq~-VcGfD 273 (716)
. ..+=+-++++ +.+ ..+.+-.| .| .|-|++ -.|. .|++++ +++|.++++++|.. +|.||
T Consensus 212 ~-~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 W-KEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred c-eEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 1 2333333321 222 22344344 22 233333 2344 377754 46889999999984 78899
Q ss_pred EEee--CCCcEEEeccC
Q 005046 274 LLRC--EGRSYVCDVNG 288 (716)
Q Consensus 274 LLRs--~g~syV~DVNg 288 (716)
+.-+ +++.||+|||-
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 35689999993
No 71
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.57 E-value=3.2e-07 Score=101.47 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=116.3
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+.... |+. .+...++..|..++ -+..+-.+.+||..+-++|.++|||+|++..+... + +..+
T Consensus 69 iD~Vv~g~E~--~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---~------ea~~ 137 (426)
T PRK13789 69 FDLIVVGPED--PLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---S------SSLS 137 (426)
T ss_pred CCEEEECCch--HHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---H------HHHH
Confidence 6777754333 342 23344556665443 23346668899999999999999999998776521 0 1122
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
++. .++.|+|+||..+. ..++++.....+ ..+.++.+-.. +.|. ..+..+|+||||. |+-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEE
Confidence 222 24589999999764 344444333221 11111111000 1110 1234799999997 444444
Q ss_pred EEE--CCceeE---EEeecCCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---c---CceeeEeEEe
Q 005046 214 YTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLR 276 (716)
Q Consensus 214 ytV--G~~~vh---Ae~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kaf---g---q~VcGfDLLR 276 (716)
.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-
T Consensus 202 ~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i 280 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI 280 (426)
T ss_pred EEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE
Confidence 444 333221 11111 224676666777666666765 476322 3445556555 4 4567789888
Q ss_pred eCCC-cEEEeccCc
Q 005046 277 CEGR-SYVCDVNGW 289 (716)
Q Consensus 277 s~g~-syV~DVNgw 289 (716)
+++| +||+|+|.=
T Consensus 281 t~~g~~~vlE~n~R 294 (426)
T PRK13789 281 SPEGEPKVVEFNCR 294 (426)
T ss_pred cCCCCEEEEEEecC
Confidence 8766 999999974
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.46 E-value=2.8e-07 Score=113.34 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=117.2
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCc-EEEEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~-t~~~~r~~~~~~~~~~~e 131 (716)
.+|++|+-|+ |-. ....+.++..+. |+-++.++..+++||....++|+++|||+|. +.++. +
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~-s----------- 138 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLS-S----------- 138 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecC-C-----------
Confidence 4678887653 321 223556667774 6678899999999999999999999999865 54444 1
Q ss_pred ccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... -..++.|+|+||..|. ..++.+..... -....|+.+.+.+..+ + .+..+++||||.. |+-
T Consensus 139 ~dea~~~-a~~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~g-~~e 206 (1201)
T TIGR02712 139 LDEALEA-AKEIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGESF------F-GDAGVFLERFVEN-ARH 206 (1201)
T ss_pred HHHHHHH-HHhcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHHh------c-CCCcEEEEecCCC-CEE
Confidence 1222211 1234699999999985 23333332211 1222333332111000 0 1345899999974 566
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC--CC
Q 005046 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GR 280 (716)
Q Consensus 211 IKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~--g~ 280 (716)
+-|.++|+ .+++--.|..- .-++|...-+..-+..|++ +-.++|.++++++|.. ++.+|++-+. ++
T Consensus 207 veV~v~~Dg~g~vv~lg~rd~s----~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~ 282 (1201)
T TIGR02712 207 VEVQIFGDGKGKVVALGERDCS----LQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE 282 (1201)
T ss_pred EEEEEEECCCCeEEEeeEEEee----eEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC
Confidence 77766653 34443333210 0111111111111112443 4566888999999865 7779999864 67
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+||+|||.
T Consensus 283 ~y~lEVNp 290 (1201)
T TIGR02712 283 FYFLEVNT 290 (1201)
T ss_pred EEEEEEEC
Confidence 99999995
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.41 E-value=1.1e-06 Score=107.13 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=121.3
Q ss_pred CcCeeeccccCCCcHHHHH--H---HHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAE--S---YATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai--~---y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++|+.++....+.-+. . .++..+.. .-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 5899999876443443332 1 45566643 4578999999999999999999999999999988732
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
++.... -..++.|+|+||..|. ..++++.+.... ...+++..- .....+.+|+|||++- .
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~gG~Gv~iv~~~eE---L~~a~~~~~-----------~~s~~~~vLVEe~I~G-~ 213 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTLGGTGGGIAENLEE---LEQLFKQGL-----------QASPIHQCLLEESIAG-W 213 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEccCC-C
Confidence 121111 1234589999999874 222322221110 111111110 0112357999999963 1
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC-ceeeEeEE
Q 005046 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~kafgq-~VcGfDLL 275 (716)
..+=|-++.+ +.+ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 2344444432 222 22233333 22 2223221 233 47765 36788999999998 57889988
Q ss_pred eeC--CCcEEEeccCccccccchhh
Q 005046 276 RCE--GRSYVCDVNGWSFVKNSYKY 298 (716)
Q Consensus 276 Rs~--g~syV~DVNgwSFVK~n~kY 298 (716)
-+. +++||+||| +=+-++..+
T Consensus 287 l~~~~g~~~ViEIN--PR~~~s~~l 309 (1068)
T PRK12815 287 LDPKSKQYYLIEVN--PRVSRSSAL 309 (1068)
T ss_pred EECCCCcEEEEEEe--cCcccchhh
Confidence 763 569999999 333344444
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.40 E-value=1.4e-06 Score=98.16 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=116.7
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCC-cEEEEecCCCccccccccCcc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P-~t~~~~r~~~~~~~~~~~e~~ 133 (716)
+|++|+...+ |+. .+...++..+.. .-++..+-.+.+||..+-++|+++|||+| .+..+. + .+
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~-~-----------~~ 135 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFY-D-----------VE 135 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeC-C-----------HH
Confidence 6888875443 442 344455566654 45888999999999999999999999997 454443 2 12
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCC-Ccccc--------cc---ccccc-ccCcceEE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RSSEF--------HP---DVRRV-RREGSYIY 200 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign-~sS~~--------~p---~~~~~-r~~gsyIy 200 (716)
++...- ..+ .|+|+||..+. .|-|+. +...... .++.+ +. +...+ ..+..+|+
T Consensus 136 ea~~~~-~~~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 136 EAAKFI-EYG-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHHHH-hhc-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 222211 112 49999999986 454553 2221110 00000 00 00011 13567999
Q ss_pred eeccCCCCceeEEEEECCceeE-EEeecC-CCCCCceeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhcCc-
Q 005046 201 EEFMPTGGTDVKVYTVGPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQA- 268 (716)
Q Consensus 201 QEFi~~~G~DIKvytVG~~~vh-Ae~RKS-Pv~DG~vrrN~~gke~r~p----v~-Lt~eE----k~iA~ka~kafgq~- 268 (716)
||||.-.--.|=+++-|..+.. ...+.- .+.+|+.--|+.|=+.-.| +. +++++ .+++.++.++++..
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~ 281 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKET 281 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999843334455554544331 112111 1236666667766554334 33 34433 34577777777643
Q ss_pred ------eeeEeEEee-CCCcEEEeccC
Q 005046 269 ------VCGFDLLRC-EGRSYVCDVNG 288 (716)
Q Consensus 269 ------VcGfDLLRs-~g~syV~DVNg 288 (716)
++-+++.-+ .+||+|+|+|.
T Consensus 282 g~~~~G~l~~elmlt~~~GP~vIE~n~ 308 (486)
T PRK05784 282 GERYVGVISGQMMLTELWGPTVIEYYS 308 (486)
T ss_pred CCCcEEEEEEEEEEecCCCcEEEEEec
Confidence 445688888 89999999994
No 75
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.22 E-value=4.3e-06 Score=87.17 Aligned_cols=193 Identities=19% Similarity=0.258 Sum_probs=118.5
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCC-CC--CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc
Q 005046 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (716)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~g-IP--~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge 155 (716)
.++....|. ...|||.+|+.|.+.. +. +|.|...... + +...++.- .+-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---~------~l~~~L~~-----y~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---E------DLREMLNK-----YKSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---H------HHHHHHHH-----CCEEEEEeCCCC
Confidence 345556665 3479999999999864 44 7888777631 1 12222221 245889999996
Q ss_pred CcceeEEeccCCCChHHHHHhhhCC-Cccccc------ccccccccCcceEEeeccCC---CC--ceeEEEEEC--C---
Q 005046 156 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 218 (716)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrkign-~sS~~~------p~~~~~r~~gsyIyQEFi~~---~G--~DIKvytVG--~--- 218 (716)
.+..|+.=...++|..--++.-+. ....+. .-+........||+|+.|+- +| -|+||++-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 444444433333322100111110 000111 00011125669999999985 45 899999982 2
Q ss_pred ceeEEEeecCCCCCCceeecCCCCceeeeee-----------CCHHHHHHHH----HHHHHhcC--ceeeEeEEeeC-CC
Q 005046 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMAR----EVCIAFRQ--AVCGFDLLRCE-GR 280 (716)
Q Consensus 219 ~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-----------Lt~eEk~iA~----ka~kafgq--~VcGfDLLRs~-g~ 280 (716)
.+....+|.++ .|.+-+|.++||...++. +..+-+++|. .+.+.||. .-.|+||-=.. |+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 56788999998 999999999888765541 2222334444 44455674 67899998875 56
Q ss_pred cEEEeccCccccc
Q 005046 281 SYVCDVNGWSFVK 293 (716)
Q Consensus 281 syV~DVNgwSFVK 293 (716)
..++|||+=+-..
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 7799999876543
No 76
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.97 E-value=1.8e-05 Score=88.84 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=128.7
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCCcccCC--chhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNE--LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~iNd--l~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e 131 (716)
.+|+++|.|+ |-- .+..+-++..+ ++..- .+....++||...-++++++|||+|+.. ++. ..+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs----~~~------~~~ 140 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS----DGA------VAD 140 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCC----CCC------cCC
Confidence 5789999887 433 44555555666 44443 4667789999999999999999999986 211 001
Q ss_pred ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCC
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G 208 (716)
.++... .-+.++.|+|+||..|- -|.|+ |+++....-...|..-.. ....++.++.|+|+.. -
T Consensus 141 ~ee~~~-~a~~iGyPVivKa~~Gg-----------Gg~G~-r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~ 206 (449)
T COG0439 141 NEEALA-IAEEIGYPVIVKAAAGG-----------GGRGM-RVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-P 206 (449)
T ss_pred HHHHHH-HHHHcCCCEEEEECCCC-----------CcccE-EEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-C
Confidence 223333 12334599999999986 34454 355544322222221110 0114777999999987 3
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee-CC
Q 005046 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EG 279 (716)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~----iA~ka~kafgq~VcG-fDLLRs-~g 279 (716)
+-|=+-+.|+ .++|.-.|-. +.=||+-.=.|..-...++++.+. .|.+++++.|-.-|| |..|=. ++
T Consensus 207 rhievqv~gD~~g~~i~l~eRdc----siqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~ 282 (449)
T COG0439 207 RHIEVQVLGDGHGNVIHLGERDC----SIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNG 282 (449)
T ss_pred ceEEEEEEEcCcccEEEEEeccC----CCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Confidence 4555666665 4588888863 234555555666645556665554 467888888777776 788888 49
Q ss_pred CcEEEecc
Q 005046 280 RSYVCDVN 287 (716)
Q Consensus 280 ~syV~DVN 287 (716)
++|++|+|
T Consensus 283 ~~yfiEmN 290 (449)
T COG0439 283 EFYFIEMN 290 (449)
T ss_pred CEEEEEEe
Confidence 99999999
No 77
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.84 E-value=7.7e-05 Score=80.67 Aligned_cols=150 Identities=25% Similarity=0.386 Sum_probs=102.0
Q ss_pred cccCCch-hhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeE
Q 005046 83 FLVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (716)
Q Consensus 83 ~~iNdl~-~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~I 161 (716)
+.=|+.. ....+-+|.+.|..|...|.|.|.+.-.. -+..+ .+|.|+||++|.
T Consensus 107 v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e----------------~~~~g----ekt~IlKPv~Ga------ 160 (389)
T COG2232 107 VAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE----------------PLEEG----EKTLILKPVSGA------ 160 (389)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------------hhhhc----ceeeEEeeccCC------
Confidence 3345655 77888889999999999999988763221 11112 399999999995
Q ss_pred EeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC---------CCceeEEEEECCceeEEEeecCCCCC
Q 005046 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVD 232 (716)
Q Consensus 162 Yyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~---------~G~DIKvytVG~~~vhAe~RKSPv~D 232 (716)
||. ++.+. ++-+. ++ .-+|.||||+- +|+|....+|...++-
T Consensus 161 -------GG~---~el~~-----~~Ee~--~~--~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~---------- 211 (389)
T COG2232 161 -------GGL---VELVK-----FDEED--PP--PGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID---------- 211 (389)
T ss_pred -------Cce---eeecc-----ccccc--CC--cceehhhhcCCceeEEEEEecCcceEEEEEeeeeec----------
Confidence 342 33331 22111 01 67899999973 3566666666555443
Q ss_pred CceeecCC-----CCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccC
Q 005046 233 GVVMRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 233 G~vrrN~~-----gke~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNg 288 (716)
|. +.+-. |-=+.+|+....|-.++|..+..-||+. --|||+|-...||||+|||=
T Consensus 212 ~~-~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNP 272 (389)
T COG2232 212 GL-RGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNP 272 (389)
T ss_pred cc-ccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEecC
Confidence 21 11111 4445667777767788999999999974 67999999999999999995
No 78
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.82 E-value=0.00016 Score=79.12 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=101.6
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcc
Q 005046 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (716)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHn 158 (716)
+..| +.-+..+.....||....+.|.++|||+|++ +. + .++ +..|+|+||..|.+ +
T Consensus 107 ~~~p-~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~-~-----------~~~--------i~~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVP-MFGNREILRWEADRDKERKLLEEAGIRIPRK--YE-S-----------PED--------IDRPVIVKLPGAKG-G 162 (358)
T ss_pred CCCC-cCCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--eC-C-----------HHH--------cCCCEEEEeCCCCC-C
Confidence 3344 3335668889999999999999999999996 22 1 111 23799999988752 3
Q ss_pred eeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeecCCC-CCCc
Q 005046 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 234 (716)
Q Consensus 159 i~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV---G~~~vhAe~RKSPv-~DG~ 234 (716)
-.++...+..- ....++.+-++. . +.....+|+||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~E-l~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPEE-FKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHHH-HHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 33333333221 222333321110 1 1125779999999742223335653 55555666555433 4566
Q ss_pred eee--c---CCCCceeee------eeCC----HHHHHHHHHHHHH----h-cCcee--eEeEEeeCCC-cEEEeccCcc
Q 005046 235 VMR--N---PDGKEVRYP------VLLT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCEGR-SYVCDVNGWS 290 (716)
Q Consensus 235 vrr--N---~~gke~r~p------v~Lt----~eEk~iA~ka~ka----f-gq~Vc--GfDLLRs~g~-syV~DVNgwS 290 (716)
+|- + ..+.+-.++ +.+. ++-.+++.+++++ + +..+| .+|...+.++ .||+|||+=-
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 651 1 112222222 2222 4555677777777 5 44444 5677776555 6999998743
No 79
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.63 E-value=1.1e-05 Score=81.89 Aligned_cols=165 Identities=21% Similarity=0.292 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||.++.+++++.|||+|+....--. +.++.+.+ -+.++.|+++||..|- ||-+++++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~-a~~iGyPVliKas~gg------------GG~gm~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEF-AEEIGYPVLIKASAGG------------GGRGMRIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHH-HHHH-SSEEEEETTSS------------TTTSEEEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHH-HHhcCCceEEeecccc------------cccccccc
Confidence 7999999999999999988665211 12333432 2245699999999984 33222233
Q ss_pred hhhCCCccccccccccc---ccCcceEEeeccCC-CCceeEEEEECC-ceeEEEeecCCCCCCceeecCCCC--ceeeee
Q 005046 176 RKVGNRSSEFHPDVRRV---RREGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVRYPV 248 (716)
Q Consensus 176 rkign~sS~~~p~~~~~---r~~gsyIyQEFi~~-~G~DIKvytVG~-~~vhAe~RKSPv~DG~vrrN~~gk--e~r~pv 248 (716)
.....-.+.+....... =.++.+++|+|+.. .--+|-|..=|. +++|.-.|-.- ..+ -+|+ +..=+.
T Consensus 58 ~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P~~ 131 (211)
T PF02786_consen 58 HNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAPAQ 131 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES-S
T ss_pred cchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEeecc
Confidence 32211111111100000 02788999999987 444444433322 34555455431 111 1122 334355
Q ss_pred eCCHHHH----HHHHHHHHHhcC-ceeeEeEEee--CCCcEEEeccCc
Q 005046 249 LLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (716)
Q Consensus 249 ~Lt~eEk----~iA~ka~kafgq-~VcGfDLLRs--~g~syV~DVNgw 289 (716)
.||++++ ++|.++|+++|. .+|-|-.+-. ++..||+|||--
T Consensus 132 ~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 132 TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 7888665 478999999986 4788899998 688999999964
No 80
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.39 E-value=0.00062 Score=74.87 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccC-cceeEEeccCCCChHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~r 173 (716)
+|++..|.+|.++|||+|+++-.. ..+..|+|+||..|.- -...++.-++ -..
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~p----------------------~eId~PVIVKp~~asG~~srG~f~a~s----~eE 178 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKDP----------------------EEIDRPVIVKLPEAKRRLERGFFTASS----YED 178 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecCc----------------------cccCccEEEEECCCCCccccCeEeeCC----HHH
Confidence 567889999999999999997621 0124899999999960 0111111111 011
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CC--ceeEEEeecCCCCCCceee------------
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR------------ 237 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV--G~--~~vhAe~RKSPv~DG~vrr------------ 237 (716)
|.++....+ ......-.....+++||||.-.--.+-+|.. -+ +++..-.|----+||.+|-
T Consensus 179 l~~~a~~l~---~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p 255 (366)
T PRK13277 179 FYEKSEELI---KAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEP 255 (366)
T ss_pred HHHHHHhhh---hcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCC
Confidence 211111000 0000000122567899999742233335544 34 4444554422225776652
Q ss_pred -cCCCCceeeeeeC----CHHHHHHHHHHHHHhcC-----ce--eeEeEEeeC-CCcEEEeccC
Q 005046 238 -NPDGKEVRYPVLL----TPNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVNG 288 (716)
Q Consensus 238 -N~~gke~r~pv~L----t~eEk~iA~ka~kafgq-----~V--cGfDLLRs~-g~syV~DVNg 288 (716)
+.--|+ .|+.+ -++-.+++.+++++++. .+ ..+|...+. +..||+|||.
T Consensus 256 ~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp 317 (366)
T PRK13277 256 RYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP 317 (366)
T ss_pred ceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC
Confidence 112222 23333 35667788888899883 22 345666655 6688999993
No 81
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0017 Score=71.97 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=113.2
Q ss_pred CcCeeeccccCCCcHHHHHHHHHh-----cC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
+.|++++-++-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++..
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~--------- 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSV--------- 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccH---------
Confidence 459999999999999666653332 12 4578999999999999999999999999999 3343311
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc-cccc--cCcceEEeeccCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 206 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~-~~~r--~~gsyIyQEFi~~ 206 (716)
.+.++.... ++.|+|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||++..
T Consensus 140 ~e~~~~~~~----ig~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIADE----IGYPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHhh----cCCCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 123333333 3499999999986 332443 33221 1111000 0111 2235677888765
Q ss_pred CCc--eeEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHH----HHHHHHHhcCc-eeeEeEEee
Q 005046 207 GGT--DVKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQM----AREVCIAFRQA-VCGFDLLRC 277 (716)
Q Consensus 207 ~G~--DIKvytVG~~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~i----A~ka~kafgq~-VcGfDLLRs 277 (716)
..+ =..+..--.+ ++-.|.+-=| .|.-.++.--. +-.-.||+.|-++ |.++.+++|.. =|-|+.-=+
T Consensus 200 ~ke~e~ev~rd~~~n~ivvc~men~dp--~gvhtgdsi~v--apaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~ 275 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVVCNMENLDP--MGVHTGDSITV--APAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVD 275 (400)
T ss_pred ceEEEEEEEEeCCCCEEEEEeCCcccc--ccccccceeee--ccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEc
Confidence 211 1111111111 2223444333 33322211111 1123466665554 45777888765 244665544
Q ss_pred C--CCcEEEecc-Ccccc
Q 005046 278 E--GRSYVCDVN-GWSFV 292 (716)
Q Consensus 278 ~--g~syV~DVN-gwSFV 292 (716)
. +..||+||| .+|=.
T Consensus 276 ~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 276 PGGGELYVIEINPRVSRS 293 (400)
T ss_pred CCCceEEEEEecCCcCcc
Confidence 4 347899999 66643
No 82
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=97.05 E-value=0.002 Score=63.93 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=76.9
Q ss_pred HHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhhCCC
Q 005046 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (716)
Q Consensus 104 L~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~ 181 (716)
|+++|||+|++..+... +|.-. ....++.|+|.|+..| - .++.++-.+.+ -..+.++.+
T Consensus 1 l~~~gip~~~~~~i~~~------------~~l~~-a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL------------EDLEE-AAESIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH------------HHHHH-HHHHHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCH------------HHHHH-HHHHcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 78999999999999833 12211 2234569999997665 3 22233333221 122233322
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHH
Q 005046 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (716)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~i 257 (716)
..+.+|.|+|++- ...|=|.++-. ..-+.+-=|++. .+.+|-.-...-.|..+++ +-++|
T Consensus 62 ------------~~~~~ilE~~v~f-~~EiSvivaR~--~~G~~~~yp~~e-n~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPF-DREISVIVARD--QDGEIRFYPPVE-NVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---E-SEEEEEEEEEE--TTSEEEEEEEEE-EEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCC-cEEEEEEEEEc--CCCCEEEEcCce-EEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999984 33343333311 011111111110 1112222233455677775 45678
Q ss_pred HHHHHHHhcC-ceeeEeEEeeCCC--cEEEecc
Q 005046 258 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDVN 287 (716)
Q Consensus 258 A~ka~kafgq-~VcGfDLLRs~g~--syV~DVN 287 (716)
|.+|+.+++. .|-+|.+.-+++| -||-|+-
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 8888888864 5778899888655 4788874
No 83
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0036 Score=68.50 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=131.8
Q ss_pred HHHHhcCCcccCCchhhhHhhhHHHHHHHHHh----CC---CCC-CcEEEEecCCCccccccccCccceeeecCeeecCc
Q 005046 75 SYATLRKPFLVNELEPQHLLHDRRKVYEQLEK----YG---IPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (716)
Q Consensus 75 ~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~----~g---IP~-P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kP 146 (716)
.-+..-+.+.||++.+.+-+-||--+..-|.+ -| +|+ |.|.+-+ ....+..- .+|
T Consensus 179 ig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn-------------HK~m~s~~----tyP 241 (488)
T KOG3895|consen 179 IGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN-------------HKEMLSQP----TYP 241 (488)
T ss_pred HHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-------------chhhccCC----CCc
Confidence 33445678899999999999999544444443 23 332 2222222 22333322 389
Q ss_pred EEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEe
Q 005046 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 225 (716)
Q Consensus 147 fVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~ 225 (716)
+|+|-=.|- +|.|-. |+.|....-|-+. .+. .+.-.-.|-||.. --|||+=-||.+|-+=|+
T Consensus 242 vVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDa-KYDiriQKIG~nYKaymR 304 (488)
T KOG3895|consen 242 VVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMR 304 (488)
T ss_pred EEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccccccc-cceeehhhhhhhHHHHhh
Confidence 999997776 777744 3433332222110 111 2222346778776 479999999999877665
Q ss_pred ecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhc-CceeeEeEEeeC-CCcEEEeccCccccccchhhH----
Q 005046 226 RKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYY---- 299 (716)
Q Consensus 226 RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafg-q~VcGfDLLRs~-g~syV~DVNgwSFVK~n~kYY---- 299 (716)
| | +.|.|.+|+ |-..-+.|-.++..|...--++..|| +.||.||+|-++ |+-||+|||+-| .-|+
T Consensus 305 t-s--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ 375 (488)
T KOG3895|consen 305 T-S--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQ 375 (488)
T ss_pred h-h--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccch
Confidence 5 5 599999997 55666778888888988888888886 799999999998 569999999843 3333
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 005046 300 DDAACVLRKMFLEAKAPHL 318 (716)
Q Consensus 300 ddcA~IL~~~~l~~~~~~~ 318 (716)
++=.+.+..++....++.+
T Consensus 376 eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 376 EEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hHHHHHHHHHHHHHhhhcc
Confidence 2333455566666665544
No 84
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.72 E-value=0.0014 Score=66.55 Aligned_cols=165 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 172 (716)
||..+=++++++||||+.+...... .+...+|+-.+ .|. |+|+--- .-.++.|.-.... --...
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~---------~~A~~~l~~~~----~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDY---------EEALEYLEEQG----YPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSH---------HHHHHHHHHHS----SSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCH---------HHHHHHHHhcC----CCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 5777889999999999987777622 13445554333 777 9998542 2244444432221 11122
Q ss_pred HHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEE-----eecCCCCCCceeecCCCCceee
Q 005046 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (716)
Q Consensus 173 rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe-----~RKSPv~DG~vrrN~~gke~r~ 246 (716)
++|.. . .+. .+...|+|||+.-.---+=++|=|..++.-- .|-- ||+-=-|+-|=|.-.
T Consensus 69 ~~~~~-----~-------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD-----R-------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS-----S-------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc-----c-------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22220 0 111 3567899999975555666777787765422 2444 898888998877777
Q ss_pred eeeC-CHHHH-----HHHHHHHHHh---cCceee---EeEEeeCCCcEEEeccC
Q 005046 247 PVLL-TPNEK-----QMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 247 pv~L-t~eEk-----~iA~ka~kaf---gq~VcG---fDLLRs~g~syV~DVNg 288 (716)
|+.. |+++. .|...+.+++ |...+| +.++-+.+||+|+|-|-
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN~ 187 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFNV 187 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEES
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEeC
Confidence 7765 55442 3344455554 455555 57778899999999983
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.017 Score=62.92 Aligned_cols=182 Identities=20% Similarity=0.265 Sum_probs=119.2
Q ss_pred HHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 73 AESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 73 ai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
++--++..+-.+|-...+-.+..||-..-++. ++.|+||-++-|++.. +++.. .-+.++.|.|+||
T Consensus 90 ~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~------------~e~~~-a~~~iGfPcvvKP 156 (394)
T COG0027 90 ALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL------------EELRA-AVEKIGFPCVVKP 156 (394)
T ss_pred HHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH------------HHHHH-HHHHcCCCeeccc
Confidence 44446677777888888888888885443333 3579999999998722 22222 2234569999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCC--CceeEEEEECCc--eeEEEee
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTG--GTDVKVYTVGPE--YAHAEAR 226 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~--G~DIKvytVG~~--~vhAe~R 226 (716)
+-++ .|-|-- +.++..+-.+.++-...--| ..+..|+|+||+-+ =|=+-|=.+++. ||+-.--
T Consensus 157 vMSS-----------SGkGqs-vv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGH 224 (394)
T COG0027 157 VMSS-----------SGKGQS-VVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGH 224 (394)
T ss_pred cccc-----------CCCCce-eecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCccc
Confidence 9987 777753 66666544444442221224 56779999999863 233333334443 5543222
Q ss_pred cCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhc-CceeeEeEEeeCCCcEEEecc
Q 005046 227 KSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 227 KSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafg-q~VcGfDLLRs~g~syV~DVN 287 (716)
+-+ ||+. -|.-+|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 225 rq~--dgdY------~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 225 RQE--DGDY------RESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred ccC--CCCh------hcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 221 5554 577789999974 4678888888986 579999998888888877774
No 86
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.041 Score=60.93 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
.+++++... ..+-=..++..+++||+.==+.|+++|||+|.+..+.+. +|... -...|+.|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~~~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AAADLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HHHHcCCceEEEe
Confidence 466666666 334446788999999999999999999999999999843 12221 2234569999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~ 231 (716)
--|- ..|-|.. .++......+... ..-..+..|.|+|++=+. -|-|.++ | ++
T Consensus 142 r~gG----------YDGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~~-EiSvi~a---------R-~~-- 193 (375)
T COG0026 142 RRGG----------YDGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFER-EISVIVA---------R-SN-- 193 (375)
T ss_pred cccc----------ccCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccce-EEEEEEE---------E-cC--
Confidence 9873 1355543 3332221111111 111234449999998632 3344333 2 21
Q ss_pred CCcee-----ecCCCCceee----eeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEeccCccccccch
Q 005046 232 DGVVM-----RNPDGKEVRY----PVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVNGWSFVKNSY 296 (716)
Q Consensus 232 DG~vr-----rN~~gke~r~----pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~DVNgwSFVK~n~ 296 (716)
+|.+. -|.|..++-. |..+++ +-++||.+++.+++. .|-||.+.-+.+| -+|-|.- +=|-||-
T Consensus 194 ~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--PRvHNSG 271 (375)
T COG0026 194 DGEVAFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--PRVHNSG 271 (375)
T ss_pred CCCEEEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--CCCCCcc
Confidence 55443 3666555432 323454 566788888888875 5778888888875 4454442 4455555
Q ss_pred hhHHHHHH
Q 005046 297 KYYDDAAC 304 (716)
Q Consensus 297 kYYddcA~ 304 (716)
+|=-+.+.
T Consensus 272 H~T~~gc~ 279 (375)
T COG0026 272 HWTIDGCE 279 (375)
T ss_pred ccchhhcc
Confidence 55544443
No 87
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=95.34 E-value=0.45 Score=49.64 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=102.5
Q ss_pred hhhhHhhhHHHHHHHHHhCC--CCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccC
Q 005046 89 EPQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (716)
Q Consensus 89 ~~q~~l~DR~~~lqiL~~~g--IP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~ 166 (716)
+-...+-||..|-..+++.+ ..+|+++-+..+. +. ++=..+..+||+||..|+. .+.|+.-++
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~------------~~--i~~~~Lp~~fViK~nhgsg-~~~i~~dk~ 77 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDNP------------DD--IDFDSLPDKFVIKPNHGSG-SNIIVRDKS 77 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCCh------------hh--hhhhcCCCCEEEEEecCCC-cEEEEeCCc
Confidence 34457889999999999886 4455555544221 11 2333456899999999974 445555544
Q ss_pred CCC--hHHHHHhh-hCCCcccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeecCC-----CC
Q 005046 167 AGG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSP-----VV 231 (716)
Q Consensus 167 ~Gg--G~~rLfrk-ign~sS~~~p~~~~~r-~~gsyIyQEFi~~-~G---~DIKvytVG~~--~vhAe~RKSP-----v~ 231 (716)
..- -+++.+++ ....-.....+- ..+ -.--.|.|||+.. .| .|.|+|+.+++ ++.......+ ..
T Consensus 78 ~~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~y 156 (239)
T PF14305_consen 78 KLDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFY 156 (239)
T ss_pred ccCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEE
Confidence 321 11112222 111111111111 222 3445899999998 55 79999999995 5555444221 01
Q ss_pred CCceeecC------CCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecc
Q 005046 232 DGVVMRNP------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 232 DG~vrrN~------~gke~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVN 287 (716)
|.+|.+=. .+.....|-.| ++..++|.++|+-|. .|=||+..++++.|.-|.=
T Consensus 157 d~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 157 DRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred CcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 11111100 12222222222 355667888887765 6889999999999999874
No 88
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=93.87 E-value=0.073 Score=59.58 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=44.6
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccCC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~lege 548 (716)
|+||.. +||+.+|+.-|+ | + ++| -..| +.++.|+|||=-|+.+||++..+||+.-++.
T Consensus 69 GqLT~~G~~Q~~~LG~~LR~rYvr-------~---~-~fL--~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 69 GQLTDRGMEQMFELGRFLRKRYVR-------Y---G-NFL--SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhh-------c---c-ccC--CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 789987 999999992211 0 1 122 2222 6799999999999999999999999999754
No 89
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=92.13 E-value=0.44 Score=53.79 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=112.5
Q ss_pred HHHHHHhcCCcccCCchh-hhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 73 AESYATLRKPFLVNELEP-QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 73 ai~y~~lr~p~~iNdl~~-q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
+...++.+|..+.--... -.+=+||..+=++++++|||++.+-..+.. .+..++|.--| .|+|+||
T Consensus 79 vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~---------e~a~ayi~~~g----~piVVKa 145 (428)
T COG0151 79 VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDP---------EEAKAYIDEKG----APIVVKA 145 (428)
T ss_pred hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCH---------HHHHHHHHHcC----CCEEEec
Confidence 556666666666554433 335578888999999999999988776621 13456665333 9999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc--cccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A-- 223 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~--~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vh---A-- 223 (716)
.-=. .|-|+. .......+....+.-+ ..+. .....++|||+.-.---+=|+|=|..++- |
T Consensus 146 dGLa-----------aGKGV~-V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQD 213 (428)
T COG0151 146 DGLA-----------AGKGVI-VAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQD 213 (428)
T ss_pred cccc-----------CCCCeE-EcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccc
Confidence 4323 455664 3332221111111000 0111 12468999999865566777777766532 1
Q ss_pred EeecCCCCCCceeecCCCCceeeeee-CCHHHHH-----HHHHHHHHhcC---ceeeE---eEEeeCCCcEEEeccC
Q 005046 224 EARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-----MAREVCIAFRQ---AVCGF---DLLRCEGRSYVCDVNG 288 (716)
Q Consensus 224 e~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~-----iA~ka~kafgq---~VcGf---DLLRs~g~syV~DVNg 288 (716)
-.| +.||+-=-|+-|=|.=.|.. +|++.-+ |-..+.+++.. ..+|| =|+-+.+||+|+|-|-
T Consensus 214 hKr---a~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~ 287 (428)
T COG0151 214 HKR---AYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNA 287 (428)
T ss_pred ccc---ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEec
Confidence 123 24888888888877655554 4555333 33445555544 47776 3455678899999995
No 90
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=91.36 E-value=0.65 Score=50.75 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (716)
-.|=.-|.+-.+.|+|.|+|+.++.. .| ..+-.+..|+|.||=.|- |+-+.
T Consensus 113 ceKPllY~ra~elgl~~P~Ty~v~S~------------~d---~~~~el~FPvILKP~mgg--------------~~~~~ 163 (415)
T COG3919 113 CEKPLLYNRAEELGLPYPKTYLVNSE------------ID---TLVDELTFPVILKPGMGG--------------SVHFE 163 (415)
T ss_pred hhCcHHHHHHHHhCCCCcceEEecch------------hh---hhhhheeeeEEecCCCCC--------------cceee
Confidence 34446688888999999999999932 11 123345689999996552 22222
Q ss_pred HhhhCC-Ccccccccccccc-----cCcceEEeeccCCCCceeEEEEE----CCce---eEEEeecCCCCCCceeecCCC
Q 005046 175 FRKVGN-RSSEFHPDVRRVR-----REGSYIYEEFMPTGGTDVKVYTV----GPEY---AHAEARKSPVVDGVVMRNPDG 241 (716)
Q Consensus 175 frkign-~sS~~~p~~~~~r-----~~gsyIyQEFi~~~G~DIKvytV----G~~~---vhAe~RKSPv~DG~vrrN~~g 241 (716)
.|+..- +++.-+-.+-.+| --.+.|+||||+-+|+.-++|.- |-.+ .+--+|+=||--
T Consensus 164 araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdf--------- 234 (415)
T COG3919 164 ARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDF--------- 234 (415)
T ss_pred hhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCccc---------
Confidence 222110 0111000000111 12357999999999998888642 3332 233356666332
Q ss_pred CceeeeeeCCH--HHHHHHHHHHHHhc-CceeeEeEEeeC-CCcE-EEecc
Q 005046 242 KEVRYPVLLTP--NEKQMAREVCIAFR-QAVCGFDLLRCE-GRSY-VCDVN 287 (716)
Q Consensus 242 ke~r~pv~Lt~--eEk~iA~ka~kafg-q~VcGfDLLRs~-g~sy-V~DVN 287 (716)
|=..+.|++-+ +--+-|+++-+..+ -..+-||+=+.. +||| ++|||
T Consensus 235 gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 235 GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 22345566655 23334555554444 346678888874 7899 99999
No 91
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=91.12 E-value=0.2 Score=56.85 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=44.4
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.. +||+.+|+.. . ..|||--+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 70 ~GqLT~~G~~~~~~lG~~lR~rY-----------~-~~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 70 LGWLTPRGGELVTLLGHYQRQRL-----------V-ADGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-----------H-hcCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 3899987 9999999944 1 23565221112 457899998888999999999999998766
No 92
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=91.00 E-value=0.34 Score=44.45 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=34.6
Q ss_pred ccCccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhh
Q 005046 475 LVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (716)
Q Consensus 475 KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L 543 (716)
.+++.||.. .+|+.|+. . | ..-..||||+-.||+.||++|+.++.
T Consensus 21 ~~d~~Lt~~G~~qa~~l~~~l~~-~---------~--------------~~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 21 WGDGPLTEKGRQQARELGKALRE-R---------Y--------------IKFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHH-h---------C--------------CCCCEEEECChHHHHHHHHHHHHHhc
Confidence 356677766 77777776 3 2 23346999999999999999999985
No 93
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=90.51 E-value=0.17 Score=56.49 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=48.8
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccCCCCc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~legeLtP 551 (716)
|+||.. .+|..||+ . |----..++ =|.---.|+-++|+--+|.-.||-||-=+||--. ...|
T Consensus 167 G~LT~~G~~QhL~~G~~~r~-~---------Y~k~~lk~~-pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~ 234 (487)
T KOG3672|consen 167 GMLTAEGALQHLRLGKYFRH-R---------YEKTKLKAD-PNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAP 234 (487)
T ss_pred cceeHHhHHHHHhhhHHHHH-H---------HhhccccCC-ccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhe
Confidence 777765 99999999 5 522111111 1333445788999999999999999988888764 4667
Q ss_pred ceeeeEecCCcccC
Q 005046 552 ILVSLVSKDSSMLD 565 (716)
Q Consensus 552 ilv~~V~kd~~~ld 565 (716)
| .||-...|+-
T Consensus 235 i---~iR~s~s~~f 245 (487)
T KOG3672|consen 235 I---QIRASNSSYF 245 (487)
T ss_pred e---eeecCcccce
Confidence 6 4555444443
No 94
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=89.56 E-value=2.8 Score=40.16 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=53.0
Q ss_pred cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHH--HhcCce
Q 005046 192 VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAV 269 (716)
Q Consensus 192 ~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~k--afgq~V 269 (716)
...+..++..|-+. -..--|+|++.++++.+- += .|.. .....++...-|.++.+ .-.-..
T Consensus 32 ~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s-~Y----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~ 94 (130)
T PF14243_consen 32 LDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGS-PY----RGDW-----------DLEPDPDVVAFAIQALAAAWTLPPA 94 (130)
T ss_pred CCCCceEEEeceEe-eeeeEEEEEECCEEEEEe-ec----CCCc-----------ccCCCHHHHHHHHHHHHhcccCCCe
Confidence 33566677777776 367789999999866543 22 1111 11124444445555554 455788
Q ss_pred eeEeEEee-CCCcEEEecc-Ccc
Q 005046 270 CGFDLLRC-EGRSYVCDVN-GWS 290 (716)
Q Consensus 270 cGfDLLRs-~g~syV~DVN-gwS 290 (716)
|.+|+=++ .|+.+|+|+| ||+
T Consensus 95 ~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 95 YVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEEeCCCCEEEEEecCccc
Confidence 99999999 5789999999 553
No 95
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=88.46 E-value=0.4 Score=54.61 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=28.8
Q ss_pred ceEeecCchhHHHHHHHHHHhhhcccCCCCcceeeeE
Q 005046 521 LKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLV 557 (716)
Q Consensus 521 lkIysSdEgRVq~tAaafakg~L~legeLtPilv~~V 557 (716)
.-|++|.--||..||++||-||.+-.+..-| ++.++
T Consensus 161 y~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t-~~~~~ 196 (467)
T KOG1382|consen 161 YNINTTASQRVVDSAQAFAYGLFGEDHFNIT-LQTVS 196 (467)
T ss_pred EEeeccchHHHHHHHHHHHhhhccccccCCC-ceeee
Confidence 3589999999999999999999987776666 44333
No 96
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=87.72 E-value=0.62 Score=52.48 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=44.2
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccc-ccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst-~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.- .+|+.+|+ . | ...|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 68 ~G~LT~~G~~~~~~~G~~~r~-~---------~--~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 68 GGQLTTKGGVLEVYMGHYMRE-W---------L--AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred cccccHHHHHHHHHHHHHHHH-H---------H--HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 3899986 89999999 4 3 23356521100 1247999999999999999999999998765
No 97
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=86.90 E-value=1 Score=54.52 Aligned_cols=178 Identities=22% Similarity=0.282 Sum_probs=117.5
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|+==..+....+-||-++-.+-.++|||+=. ..+++++. .++..+ -++..++|+++|-.-|-
T Consensus 108 FIGP~~e~ld~~GdKv~Ar~~A~~agvPvip----gt~~~~~~------~ee~~~-fa~~~gyPvmiKA~~GG------- 169 (1149)
T COG1038 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVIP----GTDGPIET------IEEALE-FAEEYGYPVMIKAAAGG------- 169 (1149)
T ss_pred EeCCCHHHHHHhccHHHHHHHHHHcCCCccC----CCCCCccc------HHHHHH-HHHhcCCcEEEEEccCC-------
Confidence 4445678899999999988888899999522 22332221 122222 22345599999998874
Q ss_pred eccCCCChHHHHHhhhC-------CCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCC
Q 005046 163 YPSSAGGGMKELFRKVG-------NRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVD 232 (716)
Q Consensus 163 yp~~~GgG~~rLfrkig-------n~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~D 232 (716)
||-++|..|+.. .++|+=.. .+ -++...+|.|+.. ..-|-|=+.|+ +++|--.|-+-|
T Consensus 170 -----GGRGMR~vr~~~~l~~~~~~AksEAka---AF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv-- 237 (1149)
T COG1038 170 -----GGRGMRVVRSEADLAEAFERAKSEAKA---AF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV-- 237 (1149)
T ss_pred -----CccceeeecCHHHHHHHHHHHHHHHHH---hc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch--
Confidence 443344544332 12222111 12 3455566888876 56677777774 689999998753
Q ss_pred CceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEeeC-CCcEEEeccCcccc
Q 005046 233 GVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GRSYVCDVNGWSFV 292 (716)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~VcG-fDLLRs~-g~syV~DVNgwSFV 292 (716)
=|||-.==|++-.+-|+++-+ +-|+|+|+..|-.=+| |..|-.+ +.-|.+|||----|
T Consensus 238 --QRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 238 --QRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred --hhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 366666668888888999766 4689999999977777 6667766 47999999975554
No 98
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=84.97 E-value=0.24 Score=54.56 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeee-cCcEEEeec
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 152 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~-~kPfVeKpv 152 (716)
-..+.++|+++|||+|++.++... ++....- ..+ +.|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~~------------~ea~~~a-~~i~g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATTP------------EEAVEAA-EELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCCH------------HHHHHHH-HHcCCCcEEEEEe
Confidence 346678999999999999988732 2233211 113 599999996
No 99
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=83.66 E-value=1.1 Score=51.80 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=110.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|.==+..++.-+-||..+-+|..++|||+=+- .++..+ +++.... ....|++|+.+|++-|-
T Consensus 98 FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g~~q------s~e~~~~-~a~eIgyPvMiKa~~GG------- 159 (670)
T KOG0238|consen 98 FIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHGEDQ------SDEEAKK-VAREIGYPVMIKATAGG------- 159 (670)
T ss_pred EECCCHHHHHHhcchHHHHHHHHhcCCccccC----cccccc------cHHHHHH-HHHhcCCcEEEEeccCC-------
Confidence 33345688999999999999999999995322 121101 1222223 33467799999999885
Q ss_pred eccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCcee
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vr 236 (716)
||-++|++..-+.-.-.|...-. ..=-+...++|.||.. -+-|-|=|.|+ +++|--.|-+-+ =|
T Consensus 160 -----GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCSv----QR 229 (670)
T KOG0238|consen 160 -----GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCSV----QR 229 (670)
T ss_pred -----CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccch----hh
Confidence 33233454432211111110000 0013455688999988 55666666665 566767776642 35
Q ss_pred ecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEE-eeCCCcEEEeccCcccc
Q 005046 237 RNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLL-RCEGRSYVCDVNGWSFV 292 (716)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~VcG-fDLL-Rs~g~syV~DVNgwSFV 292 (716)
||-.==|.+-.-.|+++-+ +-|+++|+|.|-.=+| |..| .+++..|.+|+|--=-|
T Consensus 230 RnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 230 RNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred hhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 6655445554555666543 6789999999987776 4444 45677889999976555
No 100
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=83.04 E-value=1.4 Score=52.36 Aligned_cols=180 Identities=20% Similarity=0.230 Sum_probs=113.1
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
-+.+-..-+-||-.+-++--++|||+=. ..|+ | +....|..++..-- +.|+|+|..-|-
T Consensus 137 PspeVi~~mGDKv~AR~~Ai~agVpvVP----GTpg-P--itt~~EA~eF~k~y----G~PvI~KAAyGG---------- 195 (1176)
T KOG0369|consen 137 PSPEVIDSMGDKVAARAIAIEAGVPVVP----GTPG-P--ITTVEEALEFVKEY----GLPVIIKAAYGG---------- 195 (1176)
T ss_pred CCHHHHHHhhhHHHHHHHHHHcCCCccC----CCCC-C--cccHHHHHHHHHhc----CCcEEEeecccC----------
Confidence 3456677888998888889999999522 1232 1 11222333344323 399999998885
Q ss_pred CCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecC
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNP 239 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~ 239 (716)
||-++|..|+...-.-.|.-..+ +-=-||+..+|.|++. -.-|-|=..|+ +++|--.|-+-|. ||--
T Consensus 196 --GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQ----RRHQ 268 (1176)
T KOG0369|consen 196 --GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQ----RRHQ 268 (1176)
T ss_pred --CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchh----hhhc
Confidence 44344566654322222221101 1116899999999987 45667777774 6799999977533 2222
Q ss_pred CCCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee-CCCcEEEeccCccccc
Q 005046 240 DGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (716)
Q Consensus 240 ~gke~r~pv~Lt~eEk~----iA~ka~kafgq~VcG-fDLLRs-~g~syV~DVNgwSFVK 293 (716)
.==|++-.-.|.++-++ -|+|+|+..|-.=+| +..|-. +|+-|.+|||.-=-|-
T Consensus 269 KVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVE 328 (1176)
T KOG0369|consen 269 KVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVE 328 (1176)
T ss_pred ceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeee
Confidence 22355555566666553 479999999988777 556655 4779999999866553
No 101
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=81.49 E-value=0.74 Score=48.33 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=28.1
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEECC
Q 005046 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVGP 218 (716)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~----~G--~DIKvytVG~ 218 (716)
-+|.||..|. +|-|.. |++... .+.. ......+.||+|+||+. +| -|||+||+=.
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 4888998887 777764 665442 1110 01236899999999985 56 8999998733
No 102
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=78.14 E-value=1.5 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.0
Q ss_pred CCcceeEEEEEEEcCCCCcccc
Q 005046 352 QSEELRCVIAVMRHGDRTPKQK 373 (716)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKqK 373 (716)
..++|+=|+.|.|||||||-+-
T Consensus 30 ~~~~L~~Vvil~RHG~RaP~~~ 51 (436)
T PRK10172 30 PELKLESVVIVSRHGVRAPTKA 51 (436)
T ss_pred CCCeEEEEEEEeeCCCCCCCCC
Confidence 3578999999999999999743
No 103
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=74.22 E-value=4.3 Score=47.77 Aligned_cols=179 Identities=14% Similarity=0.159 Sum_probs=112.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|.==+..++..+-||..+=.+..+.|||+=.- ..+ .+++.+.+.--..++++|+.+|.--|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG----~~g-------~~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPG----YHG-------PIQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCccCC----CCC-------cccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 33345688999999999999999999995321 111 112333333345577899999997774
Q ss_pred eccCCCChHHHHHhhhCCCcccccccccccc------cCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCC
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVR------REGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDG 233 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r------~~gsyIyQEFi~~~G~DIKvytVG---~~~vhAe~RKSPv~DG 233 (716)
||-++|+.++...-.-.|+. ..| -++..++|.|+.. -+-|-+=|.| ++++|.=+|-+-+
T Consensus 164 -----GGKGMRvv~~~~e~~e~l~s---arrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl--- 231 (645)
T COG4770 164 -----GGKGMRVVETPEEFAEALES---ARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL--- 231 (645)
T ss_pred -----CCCceEeecCHHHHHHHHHH---HHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch---
Confidence 44334566655332222221 111 4778899999988 4455555555 4678888887742
Q ss_pred ceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEeeC-CCcEEEeccCcccc
Q 005046 234 VVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GRSYVCDVNGWSFV 292 (716)
Q Consensus 234 ~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~VcG-fDLLRs~-g~syV~DVNgwSFV 292 (716)
=|||--==|.+-.=-||++-+ +-|+++|++.|-.=+| |..|-.. ++.|.+|+|-==-|
T Consensus 232 -QRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQV 295 (645)
T COG4770 232 -QRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQV 295 (645)
T ss_pred -hhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceec
Confidence 245443334443334777665 3589999999977676 4555544 55778898865444
No 104
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=72.03 E-value=2.5 Score=47.59 Aligned_cols=17 Identities=53% Similarity=0.933 Sum_probs=16.1
Q ss_pred cceeEEEEEEEcCCCCc
Q 005046 354 EELRCVIAVMRHGDRTP 370 (716)
Q Consensus 354 ~eLr~vv~ViRHgDRTP 370 (716)
.+|.=|.+|.|||||||
T Consensus 32 ~~Lefv~~i~RHGdRaP 48 (411)
T KOG3720|consen 32 GELEFVQVIFRHGDRAP 48 (411)
T ss_pred CceEEEEEEeecCCCCc
Confidence 48999999999999999
No 105
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=68.88 E-value=11 Score=42.73 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=46.8
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC---CCc--eeEEEEECCc
Q 005046 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (716)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~---~G~--DIKvytVG~~ 219 (716)
.+|.||+-| |--||-|+-+ |+. +.+.-| .|. +..+|||+|.+- +|. =|=+++||+.
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y~--------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NYA--------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CCC--------CCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8778888753 222 222111 122 677899999974 453 4788999999
Q ss_pred eeEEEeecC
Q 005046 220 YAHAEARKS 228 (716)
Q Consensus 220 ~vhAe~RKS 228 (716)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=67.42 E-value=2.8 Score=46.22 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeec-CcEEEeec
Q 005046 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 152 (716)
Q Consensus 98 ~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~-kPfVeKpv 152 (716)
..+.++|+++|||+|++.++... ++....- ..++ .|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~------------~ea~~~~-~~ig~~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV------------EEAEEIA-AKLGAGPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH------------HHHHHHH-HHhCCCcEEEEec
Confidence 45779999999999999988622 1221110 1244 79999997
No 107
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=63.95 E-value=2.6 Score=43.87 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge 155 (716)
+-..++++|+..|||+|++.++... ++.... -..++.|+|.|.++-.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~------------~ea~~~-a~~ig~PvvlKi~sp~ 57 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSA------------EEAVAA-AEEIGFPVVLKIVSPD 57 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSH------------HHHHHH-HHHH-SSEEEEEE-TT
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCH------------HHHHHH-HHHhCCCEEEEEecCC
Confidence 3468899999999999999999833 233321 1234599999999864
No 108
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=62.66 E-value=16 Score=43.57 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=50.2
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 005046 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (716)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~---~G--~DIKvytVG~~ 219 (716)
.+|.||+-| |--||-|+-+. |.. +.+.-| .|. +.-+|||+|.+- +| .=|=+++||++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~~-~~~~~g----~y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EEV-LDKTSG----KFA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----CcE-eeccCC----CCC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 499999999 87888888542 221 222222 133 567899999975 22 45778999999
Q ss_pred eeEEEeecCCCCCCceeec
Q 005046 220 YAHAEARKSPVVDGVVMRN 238 (716)
Q Consensus 220 ~vhAe~RKSPv~DG~vrrN 238 (716)
++..--|.+ ++.+-.|
T Consensus 592 ~aG~giRed---~~~IT~~ 607 (619)
T PRK10507 592 YGGTCLRGD---PSLVIKK 607 (619)
T ss_pred EEEEEEecC---CccccCC
Confidence 999999987 4444333
No 109
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=61.40 E-value=12 Score=34.85 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.3
Q ss_pred ceEeecCchhHHHHHHHHHHhh
Q 005046 521 LKIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 521 lkIysSdEgRVq~tAaafakg~ 542 (716)
-.||||.-.|++.||+++++++
T Consensus 49 ~~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 49 DRIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred CEEEECcHHHHHHHHHHHHHhc
Confidence 3699999999999999999887
No 110
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=59.46 E-value=3.7 Score=42.15 Aligned_cols=42 Identities=38% Similarity=0.585 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEeecc
Q 005046 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (716)
Q Consensus 99 ~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~ 153 (716)
.+-++|+++|||+|+..++..+. +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~e---------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSPE---------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSHH---------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCHH---------HHHHHHHHhCC----CcEEEEEeE
Confidence 46789999999999999998541 2333332 554 789999964
No 111
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=59.14 E-value=8.3 Score=35.46 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 112
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=52.85 E-value=15 Score=42.24 Aligned_cols=191 Identities=20% Similarity=0.288 Sum_probs=100.0
Q ss_pred eeEEEEeecCCccCChhHHHHHHHhhcCCceEEEE-------eCcceeecCCCcccCCcCee---------eccccCCCc
Q 005046 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIH-------FGDKVILEDPIEKWPICDCL---------IAFYSSGYP 69 (716)
Q Consensus 6 ~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiii-------F~d~vIL~e~ve~wP~~D~l---------Isf~s~gfp 69 (716)
+.+|.|+=-.-..-+.=-..+..++.++| ++.+| |.|..... .+-.+|++ |..++..=|
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G-~~~vI~d~~~L~y~~g~L~~----~~~~ID~VyRR~Vt~e~l~~~d~~~~ 259 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHG-YDCVICDPRDLEYRDGRLYA----GGRPIDAVYRRFVTSELLERYDEVQP 259 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcC-CceEecChHHceecCCEEEE----CCEeeehhhHhhhhHHhhhccccchH
Confidence 44566554444333333335556666666 55544 33333333 44556665 444444445
Q ss_pred HHHHHHHHHhcCCcccCCchhhh--------HhhhHHHHH------HHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 70 LEKAESYATLRKPFLVNELEPQH--------LLHDRRKVY------EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 70 l~kai~y~~lr~p~~iNdl~~q~--------~l~DR~~~l------qiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
|-.|++ .+....+|++.+|- +|||-.... +-+-+.. +|-|..+.... +..--+.-|.
T Consensus 260 li~Ay~---~~av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H--vP~T~~l~~~~----~~~~g~~~dL 330 (445)
T PF14403_consen 260 LIQAYR---DGAVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH--VPWTRLLTAGR----TTYQGEDVDL 330 (445)
T ss_pred HHHHHh---cCCeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh--CCceEEEcCcc----ccccccchhH
Confidence 555555 78888899988763 344443222 2222334 45777776310 0000011222
Q ss_pred ee--ecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCccccccccc--ccc--cCcceEEeeccCC--
Q 005046 136 VE--VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR--RVR--REGSYIYEEFMPT-- 206 (716)
Q Consensus 136 I~--v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~--~~r--~~gsyIyQEFi~~-- 206 (716)
++ +.. ..-+|+||.++- .|+||| | -+++++-. .++ .++.||+|||+.-
T Consensus 331 ~~~~~a~---r~~lVLKP~D~Ygg~GV~~-----------------G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~ 387 (445)
T PF14403_consen 331 VEFAIAN---RDRLVLKPNDEYGGKGVYI-----------------G---WETSPEEWEAALEEAAREPYILQEYVRPPR 387 (445)
T ss_pred HHHHHhc---hhcEEeccccccCCCCeEE-----------------C---CcCCHHHHHHHHHHHhcCCcEEEEEecCCc
Confidence 21 111 355999999984 333333 2 22333222 222 3568999999854
Q ss_pred -------CCc--------eeEEEEECCceeEEEeecCCCCCCce
Q 005046 207 -------GGT--------DVKVYTVGPEYAHAEARKSPVVDGVV 235 (716)
Q Consensus 207 -------~G~--------DIKvytVG~~~vhAe~RKSPv~DG~v 235 (716)
+|+ ++=.|+-|++++.+-+|-|+ .+..
T Consensus 388 ~~~~~~~dg~~~~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 388 EPMPAFEDGEVVFEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred cccccccCCceeEeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 121 23348889999999999995 5554
No 113
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=52.59 E-value=10 Score=36.41 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 599999999999999998753
No 114
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=51.84 E-value=17 Score=30.92 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.9
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc
Q 005046 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (716)
Q Consensus 235 vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~ 268 (716)
|+.+...-+..+|..||++||.+.-.+|.-+|+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 4545558899999999999999999999999986
No 115
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=50.69 E-value=6.5 Score=44.73 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee-eecCeeecCcEEEeec
Q 005046 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPV 152 (716)
Q Consensus 98 ~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I-~v~G~~~~kPfVeKpv 152 (716)
..+.++|+++|||+|+..++..+ + |..... +++ .-+.|+|+|..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t~---e------ea~~aa~~l~--~~~~pvVvKaq 77 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASSL---D------EVKKALEKMF--PDEGEVVVKSQ 77 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH---H------HHHHHHHHhc--ccCCcEEEEEE
Confidence 46789999999999999988743 1 111111 122 00389999998
No 116
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=46.95 E-value=9.5 Score=42.76 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCcEEEEecC
Q 005046 99 KVYEQLEKYGIPVPRYALVNRE 120 (716)
Q Consensus 99 ~~lqiL~~~gIP~P~t~~~~r~ 120 (716)
.+.++|++.|||+|++.++..+
T Consensus 7 eak~lL~~yGIpvp~~~~~~~~ 28 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYSP 28 (392)
T ss_pred HHHHHHHHcCCCCCCceEECCH
Confidence 4678999999999999998733
No 117
>PRK03482 phosphoglycerate mutase; Provisional
Probab=44.30 E-value=17 Score=36.42 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.5
Q ss_pred eEeecCchhHHHHHHHHHHh
Q 005046 522 KIYSSDEGRVQMSAAAFAKG 541 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg 541 (716)
.||||.-.|++-||+++++.
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 69999999999999999864
No 118
>PRK13463 phosphatase PhoE; Provisional
Probab=43.62 E-value=17 Score=36.43 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCchhHHHHHHHHHHh
Q 005046 522 KIYSSDEGRVQMSAAAFAKG 541 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg 541 (716)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999753
No 119
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=40.95 E-value=22 Score=33.53 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.-.|++.||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 599999999999999998755
No 120
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=40.55 E-value=21 Score=35.43 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEeecCchhHHHHHHHHHHhhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGLL 543 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~L 543 (716)
.||||+-.|++.||++.|+.+-
T Consensus 53 ~i~sS~l~Ra~~TA~~~a~~~~ 74 (208)
T COG0406 53 AIYSSPLKRAQQTAEPLAEELG 74 (208)
T ss_pred EEEECchHHHHHHHHHHHHhcC
Confidence 4899999999999999998764
No 121
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=39.38 E-value=9.7 Score=41.67 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=45.3
Q ss_pred ecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccC--cceEEeeccCCCCceeEEEEECCce
Q 005046 143 FWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGTDVKVYTVGPEY 220 (716)
Q Consensus 143 ~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~--gsyIyQEFi~~~G~DIKvytVG~~~ 220 (716)
++.|+|.||+.|+ +|.|.+-..+.+-+..-.-.+.-..+..+ -+.+.|+|. .|.|-++||.+.+.
T Consensus 86 ~giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~ 152 (317)
T COG1181 86 LGIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPARE 152 (317)
T ss_pred hCCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCc
Confidence 4499999999999 88877633333322222222211122222 334444443 47889999999999
Q ss_pred eEEEeecC
Q 005046 221 AHAEARKS 228 (716)
Q Consensus 221 vhAe~RKS 228 (716)
.++--|.-
T Consensus 153 gSSvg~~~ 160 (317)
T COG1181 153 GSSVGRSP 160 (317)
T ss_pred cceeeEEE
Confidence 98888843
No 122
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=38.61 E-value=23 Score=36.61 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999765
No 123
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=37.87 E-value=24 Score=35.15 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999998764
No 124
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=37.35 E-value=27 Score=33.78 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.=.|++.||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 125
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=37.00 E-value=24 Score=35.13 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.5
Q ss_pred eEeecCchhHHHHHHHHHHh
Q 005046 522 KIYSSDEGRVQMSAAAFAKG 541 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg 541 (716)
+||||.-.|++.||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 126
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=35.51 E-value=29 Score=39.38 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCcceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCC------CCCcceeecchhcHHHHHHHHhhh
Q 005046 352 QSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGG------RPRAETKLKSAVQLQDLLDATRIL 417 (716)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~------~~~~e~klk~~~~l~~~l~~~~~~ 417 (716)
..+.|.-||.|.|||.|.|-+--- +.+.++... .+.+++.-+...++..+=+..|..
T Consensus 27 ~~~~L~~vvilsRHg~R~P~~~~~---------~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~ 89 (413)
T PRK10173 27 EGYQLQQVLMMSRHNLRAPLANNG---------SVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREW 89 (413)
T ss_pred ccCeEEEEEEEeecccCCCCCCcc---------hhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 468999999999999999975431 123332211 135666666666655555544443
No 127
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=34.59 E-value=93 Score=39.40 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=119.9
Q ss_pred CCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 50 PIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 50 ~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
+|.+.-.|..+|=-+|-..|-.=|+.--+.---+.=-+..|+...-||.+--++|++.||.-|.--.+. .+
T Consensus 987 DiYe~E~~~G~iis~GGQ~pnNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt---------~~ 1057 (1435)
T KOG0370|consen 987 DIYELENSEGIIISVGGQLPNNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELT---------SL 1057 (1435)
T ss_pred hhhhhccCCceEEEecCcCcchhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhc---------cH
Confidence 345666665555555555665545442111111122345788889999999999999999999876555 22
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC-CC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G 208 (716)
.|...+-+ .+++|.++.|---- .| .++.....-++-.+-.. ....+.++...+.-.||++ +-
T Consensus 1058 ~eA~~F~~----~VgYP~lvRPSYVL-----------SG-aAMnv~~~~~dl~~~L~-~A~~vs~dhPVVisKfie~AkE 1120 (1435)
T KOG0370|consen 1058 EEAKKFAE----KVGYPVLVRPSYVL-----------SG-AAMNVVYSESDLKSYLE-QASAVSPDHPVVISKFIEGAKE 1120 (1435)
T ss_pred HHHHHHHH----hcCCceEeccccee-----------cc-hhhhhhhcHHHHHHHHH-HHhhcCCCCCEEhHHhhcccce
Confidence 22222222 23499999994321 11 12222221111111111 0114557889999999998 56
Q ss_pred ceeEEEEE-CCceeEEEeecCCCCCCcee-ecCCCCce---eeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC
Q 005046 209 TDVKVYTV-GPEYAHAEARKSPVVDGVVM-RNPDGKEV---RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (716)
Q Consensus 209 ~DIKvytV-G~~~vhAe~RKSPv~DG~vr-rN~~gke~---r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~ 278 (716)
-|+-+..- |.-.+||..- .|+ +-.|-|-- --|-.|++ .-|+||.|+|+||.-+ -.-+-++-.+
T Consensus 1121 idvDAVa~~G~~~~haiSE-------HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~ 1193 (1435)
T KOG0370|consen 1121 IDVDAVASDGKVLVHAISE-------HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD 1193 (1435)
T ss_pred echhhhccCCeEEEEehhh-------hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC
Confidence 66655443 3334565422 111 22343331 12334554 4588999999999754 1225556666
Q ss_pred CCcEEEecc-----Cccccccc
Q 005046 279 GRSYVCDVN-----GWSFVKNS 295 (716)
Q Consensus 279 g~syV~DVN-----gwSFVK~n 295 (716)
+.-.|+|-| +|+||-.-
T Consensus 1194 n~lkVIECN~RaSRSFPFvSKt 1215 (1435)
T KOG0370|consen 1194 NELKVIECNVRASRSFPFVSKT 1215 (1435)
T ss_pred CeEEEEEeeeeeeccccceehh
Confidence 667799988 78998433
No 128
>PRK01295 phosphoglyceromutase; Provisional
Probab=31.96 E-value=36 Score=34.42 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+=.|++.||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 129
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=30.60 E-value=39 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.8
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 599999999999999998643
No 130
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=29.16 E-value=45 Score=36.22 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEeecCchhHHHHHHHHHHhhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGLL 543 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~L 543 (716)
.||||+=.|++.||++++.++-
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999997763
No 131
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.14 E-value=31 Score=33.17 Aligned_cols=71 Identities=11% Similarity=0.241 Sum_probs=49.4
Q ss_pred eEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHh
Q 005046 7 ITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATL 79 (716)
Q Consensus 7 i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~l 79 (716)
-.||+|+|+--.... |++++.+|.+.+--++.|+-.=.+.+++.+.|=...+ =.||+.|-|+...++++..
T Consensus 55 dii~iSsl~~~~~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 55 HVVGVSSLAGGHLTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CEEEEcCchhhhHHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHHH
Confidence 479999999655555 9999999988764355555454445655555544443 4577889999888887654
No 132
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=29.11 E-value=41 Score=34.62 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=18.2
Q ss_pred eEeecCchhHHHHHHHHHHh
Q 005046 522 KIYSSDEGRVQMSAAAFAKG 541 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg 541 (716)
.||||+=.|++.||++++.+
T Consensus 52 ~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 52 QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred EEEECChHHHHHHHHHHHHh
Confidence 59999999999999998764
No 133
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=28.25 E-value=46 Score=32.57 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.=.|++.||++++..+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 47 RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred EEEECCHHHHHHHHHHHHHHh
Confidence 599999999999999998875
No 134
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=27.75 E-value=46 Score=34.15 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=18.4
Q ss_pred eEeecCchhHHHHHHHHHHh
Q 005046 522 KIYSSDEGRVQMSAAAFAKG 541 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg 541 (716)
.||||+=.|++.||+++++.
T Consensus 52 ~i~sSpL~Ra~~TA~~i~~~ 71 (228)
T PRK14119 52 VAFTSLLTRALDTTHYILTE 71 (228)
T ss_pred EEEeCccHHHHHHHHHHHHh
Confidence 59999999999999999875
No 135
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=26.89 E-value=47 Score=34.17 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=18.9
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+=.|++.||++++..+
T Consensus 51 ~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 51 IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred EEEEeChHHHHHHHHHHHHhc
Confidence 599999999999999998753
No 136
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=26.68 E-value=53 Score=34.09 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=18.0
Q ss_pred eEeecCchhHHHHHHHHHH
Q 005046 522 KIYSSDEGRVQMSAAAFAK 540 (716)
Q Consensus 522 kIysSdEgRVq~tAaafak 540 (716)
.||||+-.|++.||++|+.
T Consensus 103 ~I~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 103 DLYSSNTVRTIQSATWFSA 121 (201)
T ss_pred EEEECCCHHHHHHHHHHhc
Confidence 7999999999999999976
No 137
>PRK01112 phosphoglyceromutase; Provisional
Probab=25.23 E-value=56 Score=33.84 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=18.7
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+=.|++.||++++..+
T Consensus 50 ~iysSpl~Ra~qTA~~i~~~~ 70 (228)
T PRK01112 50 CIFTSTLVRSLMTALLAMTNH 70 (228)
T ss_pred EEEEcCcHHHHHHHHHHHHhh
Confidence 599999999999999998644
No 138
>PRK13462 acid phosphatase; Provisional
Probab=24.65 E-value=46 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=15.9
Q ss_pred eEeecCchhHHHHHHHH
Q 005046 522 KIYSSDEGRVQMSAAAF 538 (716)
Q Consensus 522 kIysSdEgRVq~tAaaf 538 (716)
.||||+-.|++.||++.
T Consensus 56 ~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 56 LVISSPRRRALDTAKLA 72 (203)
T ss_pred EEEECchHHHHHHHHHh
Confidence 59999999999999986
No 139
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=23.03 E-value=73 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=22.2
Q ss_pred ccceEeecCchhHHHHHHHHHHhhh
Q 005046 519 HDLKIYSSDEGRVQMSAAAFAKGLL 543 (716)
Q Consensus 519 hdlkIysSdEgRVq~tAaafakg~L 543 (716)
+.=+|++|.-.|+|-||++++..|-
T Consensus 47 ~~D~VL~Spa~Ra~QTae~v~~~~~ 71 (163)
T COG2062 47 EPDLVLVSPAVRARQTAEIVAEHLG 71 (163)
T ss_pred CCCEEEeChhHHHHHHHHHHHHhhC
Confidence 4445999999999999999999998
No 140
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=22.48 E-value=64 Score=33.82 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=19.0
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||+=.|++-||++++..+
T Consensus 51 ~iysSpl~Ra~qTA~ii~~~~ 71 (245)
T TIGR01258 51 VAYTSLLKRAIHTLNIALDEL 71 (245)
T ss_pred EEEEcChHHHHHHHHHHHHhc
Confidence 599999999999999998754
No 141
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=22.32 E-value=34 Score=40.94 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=91.1
Q ss_pred hHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChH
Q 005046 92 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (716)
Q Consensus 92 ~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~ 171 (716)
.+=-+|..+-..+.++||||.++-....+ + +...+|+--+ .+++|+|. +|- .+|-|+
T Consensus 104 qlE~sK~fsK~fm~r~~IPTA~y~~ft~~---e------~a~sfi~~~~---~~~~ViKA-dGL----------AAGKGV 160 (788)
T KOG0237|consen 104 QLEASKNFSKDFMHRHNIPTAKYKTFTDP---E------EAKSFIQSAT---DKALVIKA-DGL----------AAGKGV 160 (788)
T ss_pred HhhhhHHHHHHHHHhcCCCcceeeeeCCH---H------HHHHHHHhCC---CcceEEee-ccc----------ccCCce
Confidence 34457888888999999999998776633 2 2333443221 37888885 442 145555
Q ss_pred HHHHhhhC----CCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEE------eecCCCCCCceeecCC
Q 005046 172 KELFRKVG----NRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE------ARKSPVVDGVVMRNPD 240 (716)
Q Consensus 172 ~rLfrkig----n~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe------~RKSPv~DG~vrrN~~ 240 (716)
. ..+... ...|..-.. .+- .+...++|||++-.---+=+||=|-. +.+| .| +.||+---|+-
T Consensus 161 i-v~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LEGeEvS~laftDG~s-~~~mp~aQDHKR---l~dgD~GpNTG 233 (788)
T KOG0237|consen 161 I-VAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLEGEEVSFLAFTDGYS-VRPLPPAQDHKR---LGDGDTGPNTG 233 (788)
T ss_pred E-eeccHHHHHHHHHHHHhhh--hhccccceEehhhhcCcceEEEEEEecCcc-cccCCcccchhh---hcCCCCCCCCC
Confidence 3 222111 011222110 222 56789999999744444444555543 2222 22 23777777888
Q ss_pred CCceeeeee-CCHHHH-----HHHHHHHHHh---cCceeeE---eEEeeCCCcEEEecc
Q 005046 241 GKEVRYPVL-LTPNEK-----QMAREVCIAF---RQAVCGF---DLLRCEGRSYVCDVN 287 (716)
Q Consensus 241 gke~r~pv~-Lt~eEk-----~iA~ka~kaf---gq~VcGf---DLLRs~g~syV~DVN 287 (716)
|.+---|.. +|+.+- .|-.+..+.+ |-..||| -|+-+.++|.|+|-|
T Consensus 234 gmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~vLEfN 292 (788)
T KOG0237|consen 234 GMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFN 292 (788)
T ss_pred CccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCCccEEEEe
Confidence 776444443 344332 2333344433 4445555 234566889999999
No 142
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.30 E-value=44 Score=31.13 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=47.2
Q ss_pred eeEEEEeecCCccCChhHHHHHHHhhcCCceEE-EEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHH
Q 005046 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV-IHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 78 (716)
Q Consensus 6 ~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~fei-iiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~ 78 (716)
.-.|++|.++...... +++++++|.+.+.-++ +++|.. +.++.++.|=... +=.||+.|-+.+.++.|.+
T Consensus 51 ~d~V~iS~~~~~~~~~-~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~~~~G-~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 51 VDVIGLSSLSGGHMTL-FPEVIELLRELGAGDILVVGGGI-IPPEDYELLKEMG-VAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCEEEEcccchhhHHH-HHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHCC-CCEEECCCCCHHHHHHHHh
Confidence 3478999998644433 6899999988754343 345543 3344455555555 5577899999999998864
No 143
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=21.62 E-value=47 Score=32.43 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCc
Q 005046 23 MGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYP 69 (716)
Q Consensus 23 m~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfp 69 (716)
+.+|++.|.+.| |+++-++ ++=+.|.|..+-.+|++|+-||.|+.
T Consensus 121 e~el~~~l~~~~-~~~v~~~-~~s~~eqv~~~~~a~viig~hGs~l~ 165 (206)
T PF04577_consen 121 EDELLEILKKYG-FEVVDPE-DLSFEEQVKLFASAKVIIGPHGSALT 165 (206)
T ss_pred HHHHHHHHhhCC-eEEEeCC-CCCHHHHHHHhcCCCEEEecCchHhh
Confidence 557787777766 8866654 66688889999999999999999943
No 144
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=21.47 E-value=71 Score=35.53 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=18.1
Q ss_pred cCceeeEeEEeeCCC-cEEEeccC
Q 005046 266 RQAVCGFDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 266 gq~VcGfDLLRs~g~-syV~DVNg 288 (716)
-..++|+|+.|+.+| .+|+|.|-
T Consensus 67 ~~~~~g~Dl~r~~dG~w~VleDn~ 90 (330)
T PF04174_consen 67 RLHFYGADLVRDPDGRWRVLEDNT 90 (330)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEE-
T ss_pred EEEEEEEeeeECCCCCEEEEEecC
Confidence 478999999999876 99999993
No 145
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=21.43 E-value=67 Score=35.27 Aligned_cols=21 Identities=43% Similarity=0.339 Sum_probs=18.9
Q ss_pred eEeecCchhHHHHHHHHHHhh
Q 005046 522 KIYSSDEGRVQMSAAAFAKGL 542 (716)
Q Consensus 522 kIysSdEgRVq~tAaafakg~ 542 (716)
.||||.-.|++.||++++.++
T Consensus 221 ~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 221 AVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 146
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=19 Score=42.40 Aligned_cols=72 Identities=19% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc
Q 005046 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (716)
Q Consensus 111 ~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (716)
+|+++++-.|.. +.-++.+-+..+. +|+||-..- .|.|.+ ..+|.+
T Consensus 283 mPrtyilP~d~e--------~lrk~w~~nasr~---wIVkppasa-----------Rg~gIr-v~~kw~----------- 328 (662)
T KOG2156|consen 283 MPRTYILPADRE--------ELRKYWEKNASRL---WIVKPPASA-----------RGIGIR-VINKWS----------- 328 (662)
T ss_pred cceeeeccccHH--------HHHHHHhhCcccc---EEecCcccc-----------cCcceE-eccchh-----------
Q ss_pred ccccCcceEEeeccCC----CC--ceeEEEEE
Q 005046 191 RVRREGSYIYEEFMPT----GG--TDVKVYTV 216 (716)
Q Consensus 191 ~~r~~gsyIyQEFi~~----~G--~DIKvytV 216 (716)
.+..+...++|+||.. +| .|+|+||+
T Consensus 329 q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~ 360 (662)
T KOG2156|consen 329 QFPKDRPLVVQKYIERPLLINGSKFDLRLYVV 360 (662)
T ss_pred hCCCcccHHHHHHhhcceeecCcceeEEEEEE
No 147
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=20.04 E-value=1.2e+02 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.442 Sum_probs=16.3
Q ss_pred CceeEEEEECCceeEEEe
Q 005046 208 GTDVKVYTVGPEYAHAEA 225 (716)
Q Consensus 208 G~DIKvytVG~~~vhAe~ 225 (716)
|++|.+...|+.++++-+
T Consensus 1 gE~i~aia~g~~~vavaT 18 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVAT 18 (27)
T ss_pred CceEEEEEccCCEEEEEe
Confidence 789999999999998865
Done!