Query 005047
Match_columns 716
No_of_seqs 370 out of 2436
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 1.6E-85 5.3E-90 728.2 43.8 410 289-700 12-427 (427)
2 2wme_A BADH, betaine aldehyde 100.0 7.4E-84 2.5E-88 723.5 40.4 400 268-697 27-485 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 1.4E-83 4.7E-88 716.0 38.8 409 290-700 25-444 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 2.9E-81 9.9E-86 700.0 40.5 423 289-714 12-463 (468)
5 2h5g_A Delta 1-pyrroline-5-car 100.0 1.6E-80 5.4E-85 693.2 43.1 439 267-714 11-457 (463)
6 3ek1_A Aldehyde dehydrogenase; 100.0 1.6E-80 5.4E-85 699.5 41.3 399 268-696 53-503 (504)
7 3ifg_A Succinate-semialdehyde 100.0 3.8E-80 1.3E-84 694.4 40.7 397 268-694 33-483 (484)
8 3rh9_A Succinate-semialdehyde 100.0 3.5E-80 1.2E-84 697.0 36.9 412 268-710 32-502 (506)
9 3prl_A NADP-dependent glyceral 100.0 1.1E-79 3.6E-84 693.6 40.6 401 268-696 32-484 (505)
10 4f3x_A Putative aldehyde dehyd 100.0 9.9E-80 3.4E-84 692.7 40.0 400 268-696 45-498 (498)
11 3ros_A NAD-dependent aldehyde 100.0 9.9E-80 3.4E-84 690.4 39.3 397 268-696 9-459 (484)
12 3r31_A BADH, betaine aldehyde 100.0 1.3E-79 4.6E-84 694.0 40.4 398 268-699 35-492 (517)
13 3ed6_A Betaine aldehyde dehydr 100.0 1.4E-79 4.7E-84 694.4 38.6 400 267-696 52-511 (520)
14 1a4s_A ALDH, betaine aldehyde 100.0 4.6E-79 1.6E-83 688.7 42.7 398 268-697 41-498 (503)
15 3u4j_A NAD-dependent aldehyde 100.0 4.5E-79 1.5E-83 691.3 40.4 402 268-699 43-502 (528)
16 3pqa_A Lactaldehyde dehydrogen 100.0 2.8E-79 9.7E-84 687.0 38.2 414 268-710 17-482 (486)
17 4e4g_A Methylmalonate-semialde 100.0 2.3E-79 7.8E-84 692.7 36.8 401 268-696 47-506 (521)
18 3k2w_A Betaine-aldehyde dehydr 100.0 5.2E-79 1.8E-83 687.9 39.3 399 268-696 33-489 (497)
19 1o04_A Aldehyde dehydrogenase, 100.0 1.1E-78 3.6E-83 684.6 40.0 398 268-695 40-495 (500)
20 3iwj_A Putative aminoaldehyde 100.0 8.7E-79 3E-83 687.0 39.2 401 268-696 28-490 (503)
21 3jz4_A Succinate-semialdehyde 100.0 2E-78 6.7E-83 681.6 41.6 397 268-694 30-480 (481)
22 1wnd_A Putative betaine aldehy 100.0 2E-78 6.9E-83 681.6 41.0 398 268-694 43-494 (495)
23 2o2p_A Formyltetrahydrofolate 100.0 6.2E-79 2.1E-83 688.6 36.9 400 268-694 57-516 (517)
24 1bxs_A Aldehyde dehydrogenase; 100.0 1.8E-78 6.3E-83 682.9 39.3 398 268-695 41-496 (501)
25 3qan_A 1-pyrroline-5-carboxyla 100.0 2.2E-78 7.5E-83 687.2 40.2 414 267-710 55-534 (538)
26 3b4w_A Aldehyde dehydrogenase; 100.0 1.9E-78 6.5E-83 682.4 38.7 397 268-695 29-482 (495)
27 2d4e_A 5-carboxymethyl-2-hydro 100.0 3.4E-78 1.2E-82 683.5 39.9 399 267-695 46-505 (515)
28 2imp_A Lactaldehyde dehydrogen 100.0 1.6E-77 5.5E-82 673.8 43.4 397 268-694 27-478 (479)
29 3lns_A Benzaldehyde dehydrogen 100.0 7.7E-78 2.6E-82 672.6 40.5 403 265-693 8-455 (457)
30 1uxt_A Glyceraldehyde-3-phosph 100.0 8.2E-78 2.8E-82 678.2 40.3 399 268-695 37-492 (501)
31 2w8n_A Succinate-semialdehyde 100.0 1.7E-77 5.8E-82 673.9 42.3 397 268-694 31-485 (487)
32 2j6l_A Aldehyde dehydrogenase 100.0 1.5E-77 5.1E-82 676.5 41.8 401 268-694 42-498 (500)
33 2ve5_A BADH, betaine aldehyde 100.0 1.9E-77 6.7E-82 675.5 40.6 400 268-697 27-485 (490)
34 3i44_A Aldehyde dehydrogenase; 100.0 7.1E-78 2.4E-82 677.5 36.7 395 267-693 45-496 (497)
35 1uzb_A 1-pyrroline-5-carboxyla 100.0 4.6E-77 1.6E-81 675.0 41.9 400 267-694 55-515 (516)
36 1euh_A NADP dependent non phos 100.0 3E-77 1E-81 671.0 39.3 396 268-694 23-473 (475)
37 4h7n_A Aldehyde dehydrogenase; 100.0 1.6E-77 5.5E-82 673.0 37.0 398 268-696 11-464 (474)
38 3etf_A Putative succinate-semi 100.0 2.9E-77 1E-81 669.7 38.7 396 268-694 12-460 (462)
39 3r64_A NAD dependent benzaldeh 100.0 3.8E-77 1.3E-81 674.4 39.5 402 268-699 33-489 (508)
40 3sza_A Aldehyde dehydrogenase, 100.0 6.2E-77 2.1E-81 665.8 40.7 386 290-696 17-449 (469)
41 4dng_A Uncharacterized aldehyd 100.0 4.4E-77 1.5E-81 671.8 39.1 399 268-696 27-479 (485)
42 1t90_A MMSDH, probable methylm 100.0 1.5E-76 5.2E-81 666.6 36.7 399 268-695 26-480 (486)
43 3ty7_A Putative aldehyde dehyd 100.0 3.7E-76 1.3E-80 663.1 34.7 391 268-693 28-475 (478)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 1.1E-75 3.7E-80 663.4 35.6 400 268-692 12-480 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 8.4E-76 2.9E-80 667.0 34.1 402 267-691 44-514 (528)
46 3ju8_A Succinylglutamic semial 100.0 5.4E-74 1.9E-78 646.4 39.1 392 268-696 25-472 (490)
47 4e3x_A Delta-1-pyrroline-5-car 100.0 1.7E-73 5.9E-78 648.3 37.3 399 268-695 82-551 (563)
48 4f9i_A Proline dehydrogenase/d 100.0 7.2E-73 2.5E-77 676.1 41.7 401 267-696 549-1011(1026)
49 2y53_A Aldehyde dehydrogenase 100.0 2.2E-71 7.4E-76 631.6 37.1 395 268-694 27-518 (534)
50 3haz_A Proline dehydrogenase; 100.0 2.2E-71 7.4E-76 662.0 38.0 384 290-696 549-988 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 3.9E-69 1.3E-73 603.4 36.4 383 290-698 11-452 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 9.5E-67 3.2E-71 582.2 33.5 381 290-695 6-449 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 1.7E-38 5.7E-43 342.6 22.8 254 12-283 2-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 6.6E-37 2.3E-41 315.8 20.3 245 15-281 2-251 (251)
55 3ll9_A Isopentenyl phosphate k 100.0 1.1E-33 3.8E-38 293.6 19.3 253 14-281 2-266 (269)
56 3d40_A FOMA protein; fosfomyci 100.0 1.2E-33 4E-38 296.0 16.0 248 14-283 23-283 (286)
57 2ap9_A NAG kinase, acetylgluta 100.0 8.6E-33 2.9E-37 292.0 22.6 243 14-283 25-291 (299)
58 2rd5_A Acetylglutamate kinase- 100.0 7.8E-33 2.7E-37 292.0 20.4 245 14-282 36-298 (298)
59 3nwy_A Uridylate kinase; allos 100.0 2.5E-32 8.5E-37 282.8 19.5 238 5-281 41-280 (281)
60 2e9y_A Carbamate kinase; trans 100.0 5.3E-32 1.8E-36 287.4 22.4 254 12-282 2-315 (316)
61 2v5h_A Acetylglutamate kinase; 100.0 4.9E-32 1.7E-36 287.9 21.6 246 14-283 49-311 (321)
62 3ll5_A Gamma-glutamyl kinase r 100.0 3.4E-32 1.1E-36 279.5 17.0 240 13-280 2-248 (249)
63 3l86_A Acetylglutamate kinase; 100.0 2.6E-31 9E-36 275.1 23.2 217 13-263 35-271 (279)
64 2buf_A Acetylglutamate kinase; 100.0 4.5E-31 1.5E-35 278.6 24.1 243 14-283 26-297 (300)
65 3k4o_A Isopentenyl phosphate k 100.0 4.5E-31 1.6E-35 273.2 21.7 245 14-283 6-265 (266)
66 2bty_A Acetylglutamate kinase; 100.0 3.8E-31 1.3E-35 277.3 21.3 242 14-283 21-280 (282)
67 4axs_A Carbamate kinase; oxido 100.0 5.4E-31 1.8E-35 278.1 22.3 260 8-282 18-332 (332)
68 2va1_A Uridylate kinase; UMPK, 100.0 8.5E-31 2.9E-35 270.4 21.9 234 8-281 18-255 (256)
69 2egx_A Putative acetylglutamat 100.0 7.1E-31 2.4E-35 273.1 20.8 235 16-280 1-268 (269)
70 2j4j_A Uridylate kinase; trans 100.0 9.1E-31 3.1E-35 265.6 19.4 220 15-282 1-225 (226)
71 4a7w_A Uridylate kinase; trans 100.0 3.7E-30 1.2E-34 262.7 23.2 230 14-280 7-239 (240)
72 1ybd_A Uridylate kinase; alpha 100.0 4.6E-30 1.6E-34 262.8 23.9 231 13-282 6-239 (239)
73 2we5_A Carbamate kinase 1; arg 100.0 1.6E-30 5.4E-35 275.7 21.1 252 13-281 1-309 (310)
74 1e19_A Carbamate kinase-like c 100.0 3.7E-30 1.3E-34 272.8 22.2 253 13-282 1-314 (314)
75 3ek6_A Uridylate kinase; UMPK 100.0 3E-30 1E-34 263.6 20.2 230 13-282 8-241 (243)
76 1z9d_A Uridylate kinase, UK, U 100.0 1E-29 3.6E-34 261.9 23.0 231 13-283 6-241 (252)
77 2a1f_A Uridylate kinase; PYRH, 100.0 8.6E-30 2.9E-34 261.8 21.8 232 13-283 7-241 (247)
78 3kzf_A Carbamate kinase; argin 100.0 1.1E-29 3.7E-34 263.1 22.3 258 11-282 2-316 (317)
79 2ogx_B Molybdenum storage prot 100.0 5.3E-30 1.8E-34 266.4 20.1 231 15-282 37-269 (270)
80 2brx_A Uridylate kinase; UMP k 100.0 2.1E-30 7.1E-35 265.6 14.6 225 10-281 15-243 (244)
81 1gs5_A Acetylglutamate kinase; 100.0 7.4E-30 2.5E-34 264.1 17.7 240 14-281 2-257 (258)
82 3d2m_A Putative acetylglutamat 100.0 1.3E-28 4.4E-33 275.7 24.2 258 9-298 36-322 (456)
83 2jjx_A Uridylate kinase, UMP k 100.0 2.1E-28 7.3E-33 252.4 22.9 235 10-283 8-247 (255)
84 2ogx_A Molybdenum storage prot 100.0 8.4E-29 2.9E-33 257.9 19.7 229 11-283 35-272 (276)
85 3zzh_A Acetylglutamate kinase; 100.0 3E-29 1E-33 262.7 16.1 235 15-283 49-302 (307)
86 2ij9_A Uridylate kinase; struc 100.0 1.9E-28 6.6E-33 247.3 18.2 215 15-281 1-219 (219)
87 3s6g_A N-acetylglutamate kinas 100.0 2.1E-28 7.3E-33 269.5 16.4 237 15-283 59-311 (460)
88 4ab7_A Protein Arg5,6, mitocho 99.9 1E-27 3.6E-32 263.2 16.1 236 14-283 48-302 (464)
89 3ab4_A Aspartokinase; aspartat 99.9 4.3E-27 1.5E-31 259.7 19.0 232 14-283 1-244 (421)
90 3s6k_A Acetylglutamate kinase; 99.9 6.4E-28 2.2E-32 265.8 7.4 239 15-283 62-314 (467)
91 3l76_A Aspartokinase; alloster 99.9 2.2E-25 7.7E-30 255.0 17.6 232 14-283 1-245 (600)
92 3c1m_A Probable aspartokinase; 99.9 9E-23 3.1E-27 228.0 20.5 237 16-283 2-301 (473)
93 2j0w_A Lysine-sensitive aspart 99.9 2.1E-22 7.1E-27 222.9 18.3 234 13-283 1-292 (449)
94 2cdq_A Aspartokinase; aspartat 99.9 1.1E-21 3.7E-26 219.5 23.1 240 13-283 25-324 (510)
95 3tvi_A Aspartokinase; structur 99.9 4.6E-22 1.6E-26 219.1 14.6 234 15-283 3-279 (446)
96 4gic_A HDH, histidinol dehydro 96.9 0.58 2E-05 49.9 28.3 281 363-692 93-400 (423)
97 1kae_A HDH, histidinol dehydro 94.0 7.8 0.00027 41.4 26.7 258 392-693 113-394 (434)
98 2fiu_A Conserved hypothetical 40.1 49 0.0017 27.6 5.8 69 541-621 2-76 (99)
99 3fgh_A Transcription factor A, 34.1 72 0.0025 24.1 5.5 36 298-333 28-63 (67)
100 3v42_A Folliculin; tumor suppr 32.7 52 0.0018 32.0 5.3 70 418-497 21-90 (226)
101 3qgm_A P-nitrophenyl phosphata 32.5 30 0.001 33.8 3.8 46 10-61 4-49 (268)
102 2eqz_A High mobility group pro 26.7 1E+02 0.0036 24.6 5.5 36 298-333 47-82 (86)
103 2b30_A Pvivax hypothetical pro 25.8 77 0.0026 31.9 5.6 51 7-61 18-70 (301)
104 3pdw_A Uncharacterized hydrola 24.9 62 0.0021 31.5 4.6 43 13-61 5-47 (266)
105 3ewi_A N-acylneuraminate cytid 23.7 85 0.0029 28.7 5.0 57 193-272 11-69 (168)
106 3fzq_A Putative hydrolase; YP_ 22.5 93 0.0032 30.1 5.3 45 12-61 3-47 (274)
107 1v63_A Nucleolar transcription 22.5 1.3E+02 0.0046 24.9 5.5 38 298-335 36-73 (101)
108 1hry_A Human SRY; DNA, DNA-bin 21.6 1.3E+02 0.0044 23.2 5.0 31 300-330 36-66 (76)
109 3r4c_A Hydrolase, haloacid deh 21.5 1E+02 0.0035 29.8 5.4 45 12-60 10-54 (268)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=1.6e-85 Score=728.18 Aligned_cols=410 Identities=34% Similarity=0.617 Sum_probs=372.4
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHH
Q 005047 289 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLA 368 (716)
Q Consensus 289 ~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 368 (716)
|.+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+++++++|+.++..+++.....++..++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~ 91 (427)
T 1o20_A 12 HMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMI 91 (427)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999998877777777777777778999999
Q ss_pred HHHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHH
Q 005047 369 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 448 (716)
Q Consensus 369 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~~P~~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~ 448 (716)
+.+++|+.+.++.+...+....+.+...+++++|+|||++|+||+|.+++++++|||++||+||+||||.||+|+.+|++
T Consensus 92 ~~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~ 171 (427)
T 1o20_A 92 KACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVS 171 (427)
T ss_dssp HHHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHH
Confidence 99999998765555443321112345578899999999999999888888999999999999999999999999999999
Q ss_pred HHHHhcccc-cCcCceEEecC-C-chHHHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCCcceEEEcCCCCHHH
Q 005047 449 VITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 525 (716)
Q Consensus 449 l~~~al~~a-lP~gvv~vv~~-~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~ 525 (716)
++.++|.++ +|+|++|+|+| + ++++++|..||+||+|+||||+++||.|++++.||+++|||||||+||++|||+|.
T Consensus 172 l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~ 251 (427)
T 1o20_A 172 AIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKK 251 (427)
T ss_dssp HHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHH
T ss_pred HHHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHH
Confidence 999988889 99999999996 4 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCcccccccc-C--CCCccccccccCceEE
Q 005047 526 AKNIVIDAKIDYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCT 602 (716)
Q Consensus 526 Aa~~iv~~~f~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~p-v--~~~~~~~eE~FGPVl~ 602 (716)
|++.+++++|.|+|+|+|+ +|+|||+++| |+|+++|+++++++++.+.|+++..+++| | +++++++||+||||++
T Consensus 252 Aa~~i~~~~f~n~G~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~ 329 (427)
T 1o20_A 252 AVPVIINAKTQRPGTCNAA-EKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIA 329 (427)
T ss_dssp HHHHHHHHHHSCTTSTTSE-EEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEE
T ss_pred HHHHHHHHhccCCCCCCCc-cEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEE
Confidence 9999999999998999999 9999999999 79999999999999988877765445668 5 5688999999999999
Q ss_pred EEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccch
Q 005047 603 VEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGV 682 (716)
Q Consensus 603 v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl 682 (716)
|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+|.++++++|++|+
T Consensus 330 v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl 409 (427)
T 1o20_A 330 IKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGL 409 (427)
T ss_dssp EEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCT
T ss_pred EEEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHH
Confidence 99999999999999999999999999999999999999999999999997766778899999999998666667899999
Q ss_pred hcccEEEEEEEcCceeee
Q 005047 683 EGLLTTRWILRGNGHVVD 700 (716)
Q Consensus 683 ~~ft~~k~v~~~~~~~~~ 700 (716)
++|++.|+|+++.+++|+
T Consensus 410 ~~~~~~k~v~~~~~~~~~ 427 (427)
T 1o20_A 410 RELTTYKFVVLGEYHVRE 427 (427)
T ss_dssp GGGEEEEEEEECSSCCCC
T ss_pred HHHhceEEEEECCCccCC
Confidence 999999999999988873
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=7.4e-84 Score=723.51 Aligned_cols=400 Identities=16% Similarity=0.187 Sum_probs=350.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.||+.++++..++ .+|+++|+++|++||+.|+++|..+|.++|++++++|++|+++|++++++|+|++.
T Consensus 27 ~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (490)
T 2wme_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5678999999999988 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. ..++...++.+++++.+.+. .+...+. ..+...+++|+|+|||++|+|| ||. +++++++||
T Consensus 99 --~ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~A 166 (490)
T 2wme_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHHH
Confidence 2221 12577778888888876543 3333332 2456788899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
|++||+||+||||.||+|+.+|++++++ + +|+|++|+|+| +.++++.|..||+||+|+||||+++|++|++.+
T Consensus 167 LaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 9999999999999999999999999987 7 99999999996 678999999999999999999999999887643
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCC-----
Q 005047 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGV----- 572 (716)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~----- 572 (716)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||++|| |+|+++|+++++++.+
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~ 320 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNG-TRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQD 320 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCC-CEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCc-eeeccchhHH-HHHHHHHHHHHHhCcCCCCcc
Confidence 49999999999999999999999999999999999987 99999 9999999999 7999999999987531
Q ss_pred -----------------------------EE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCC
Q 005047 573 -----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 608 (716)
Q Consensus 573 -----------------------------~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 608 (716)
++ .|+.+. .++| | | ++|++++||+||||++|++|+|
T Consensus 321 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 400 (490)
T 2wme_A 321 ENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400 (490)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESC
T ss_pred ccCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCC
Confidence 22 243321 2333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEE
Q 005047 609 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 688 (716)
Q Consensus 609 ~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~ 688 (716)
+||||+++|+++|||++||||+|.++++++++++++|+||||++....+.+||||.|+||+| +++|++|+++||+.
T Consensus 401 ~deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~G----re~G~~gl~~ft~~ 476 (490)
T 2wme_A 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRI 476 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccC----chhHHHHHHHhhce
Confidence 99999999999999999999999999999999999999999998777788999999999986 45799999999999
Q ss_pred EEEEEcCce
Q 005047 689 RWILRGNGH 697 (716)
Q Consensus 689 k~v~~~~~~ 697 (716)
|+|+++.+.
T Consensus 477 K~v~i~~g~ 485 (490)
T 2wme_A 477 KSVQVELGD 485 (490)
T ss_dssp EEEEEECSC
T ss_pred eEEEEECCC
Confidence 999997653
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=1.4e-83 Score=716.02 Aligned_cols=409 Identities=35% Similarity=0.617 Sum_probs=352.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHHH
Q 005047 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (716)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (716)
.+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+++++++|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999988777655666666777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005047 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 449 (716)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~~P~~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l 449 (716)
.+++++.+.++.+...+....+.+...+++++|+|||++|+||||++++++++|||++||+||+||||.||+|+.+++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999987766665443221224567788999999999999999977889999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-Cc-hHHHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCCcceEEEcCCCCHHHH
Q 005047 450 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 526 (716)
Q Consensus 450 ~~~al~~a-lP~gvv~vv~~-~~-~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~A 526 (716)
+.+++.++ ||+|++|+|+| +. +++++|..||+||+|+||||+.+|+.|++.+.||++||||||||+||++|||+|.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98877789 99999999996 44 58999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCcccccccc-------C-CCCccccccccC
Q 005047 527 KNIVIDAKIDYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNS 598 (716)
Q Consensus 527 a~~iv~~~f~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------v-~~~~~~~eE~FG 598 (716)
++.+++|+|.|+|+|+|+ +|+|||+++| |+|+++|+++++++++.+.|++....++. + +++++++||+||
T Consensus 265 a~~i~~~~~~n~G~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFG 342 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTM-ETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLA 342 (444)
T ss_dssp HHHCC---------CCCC-CEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---
T ss_pred HHHHHHHhcCCCcccCcC-ceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccC
Confidence 999999999998899999 9999999999 79999999999998876556543322221 1 468999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeecccccccccc
Q 005047 599 MVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARG 678 (716)
Q Consensus 599 PVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g 678 (716)
||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..|||++++||+|.++.+++|
T Consensus 343 PVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G 422 (444)
T 4ghk_A 343 PVLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARG 422 (444)
T ss_dssp CEEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCE
T ss_pred ceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999887778899999999999876667889
Q ss_pred ccchhcccEEEEEEEcCceeee
Q 005047 679 PVGVEGLLTTRWILRGNGHVVD 700 (716)
Q Consensus 679 ~~gl~~ft~~k~v~~~~~~~~~ 700 (716)
++|+++||+.|+|+++.+++|.
T Consensus 423 ~~gl~~~t~~K~v~~~~~~~~~ 444 (444)
T 4ghk_A 423 PVGLEGLTSLKYVVLGHGEGRQ 444 (444)
T ss_dssp EECGGGGEEEEEEEEEEEECCC
T ss_pred hhHHHhhceEEEEEECCCcccC
Confidence 9999999999999999988873
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=2.9e-81 Score=700.02 Aligned_cols=423 Identities=43% Similarity=0.714 Sum_probs=330.9
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhc-CHHHHHHH
Q 005047 289 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSL 367 (716)
Q Consensus 289 ~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~ 367 (716)
|...+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.++|+.++...++.. +..+++++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~ 91 (468)
T 1vlu_A 12 HMSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVM 91 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999988766666766567777 78899999
Q ss_pred HHHHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005047 368 AKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (716)
Q Consensus 368 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~~P~~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~ 447 (716)
++.++.+....++.|+..+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+|||+.||+|+.+|+
T Consensus 92 a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~ 171 (468)
T 1vlu_A 92 LQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMA 171 (468)
T ss_dssp HHHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHH
Confidence 99999887655555554331111124567889999999999999999667899999999999999999999999999999
Q ss_pred HHHHHhccc----c-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCCcceEEEcCCCC
Q 005047 448 KVITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSAN 522 (716)
Q Consensus 448 ~l~~~al~~----a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~~~~lElGGk~p~iV~~dAD 522 (716)
++++++|.+ + +|+|++|+|+++++++++|..||+||+|+||||+++||.|++.+.||+++|||||||+||++|||
T Consensus 172 ~l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dAD 251 (468)
T 1vlu_A 172 KIVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDAD 251 (468)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCC
T ss_pred HHHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCC
Confidence 999988888 9 99999999994346889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCccccc---------------ccc--
Q 005047 523 LDVAKNIVIDAKIDYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK---------------LLQ-- 585 (716)
Q Consensus 523 l~~Aa~~iv~~~f~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~---------------~~p-- 585 (716)
+|.|++.+++++|.|+|+|+|+ +|+|||+++ | +|+++|+++++++++++.|++.... +.|
T Consensus 252 l~~Aa~~i~~~~~~n~G~C~a~-~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptv 328 (468)
T 1vlu_A 252 LIKAKRISLDAKTNYPAGCNAM-ETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKT 328 (468)
T ss_dssp HHHHHHHHHHTTCC----CCCC-EEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTB
T ss_pred HHHHHHHHHHHhcCCCCcCCcC-cEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCce
Confidence 9999999999999998899999 999999999 7 9999999999998865445432111 224
Q ss_pred C--CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccC
Q 005047 586 I--PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGL 663 (716)
Q Consensus 586 v--~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~ 663 (716)
+ ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..|||+
T Consensus 329 lv~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~ 408 (468)
T 1vlu_A 329 VDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGF 408 (468)
T ss_dssp C-------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC------
T ss_pred eeCCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCC
Confidence 2 46899999999999999999999999999999999999999999999999999999999999999877777889997
Q ss_pred cceeeccccccccccccchhcccEEEEEEEcCceeeeC----CCCceeeeccccC
Q 005047 664 GAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDG----DQGVVYTHKNLAL 714 (716)
Q Consensus 664 g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~~~~~~----~~~~~~~~~~~~~ 714 (716)
|+++|++.++.+..|++|+++|++.|+|+++.++.|+. .....|+|+.+++
T Consensus 409 Gg~~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~~ 463 (468)
T 1vlu_A 409 GAEVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDI 463 (468)
T ss_dssp ----------------CCSGGGEEEEEEEECSSCCSCCC----------------
T ss_pred CCCcceecCCCCCCcchHHHHhcceEEEEECCCCcCccccccccccceecCCCCc
Confidence 77777775444434999999999999999999998842 2357999998764
No 5
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.6e-80 Score=693.18 Aligned_cols=439 Identities=47% Similarity=0.758 Sum_probs=348.1
Q ss_pred HHHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
..+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++.+|++.++
T Consensus 11 ~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~- 83 (463)
T 2h5g_A 11 VDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE- 83 (463)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-
T ss_pred CcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-
Confidence 46789999999999888 78999999999999999999999999999999999999999999999999886443
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhccc-ccccccccccccCCCeEEEEeecceeEEEEEcCCCchhHHHHHHHHH
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAI 425 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~~P~~~~~~~~~AL 425 (716)
.|+.....+++..+..|+..+++.+++++... +..|...+......+...+++++|+|||++|+||||....++++|||
T Consensus 84 ~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~AL 163 (463)
T 2h5g_A 84 GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAI 163 (463)
T ss_dssp TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHHHH
T ss_pred ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHHHH
Confidence 21111122233345578999999999988543 44454432111113456788999999999999998854449999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC-CC
Q 005047 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-IP 504 (716)
Q Consensus 426 aaGNtvv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~-~~ 504 (716)
++||+||+||||.||+|+.+|++++++++.++-|+|+||+|+|+.++++.|..||+||+|+||||+++||.|++.++ ||
T Consensus 164 aaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~p 243 (463)
T 2h5g_A 164 ASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIP 243 (463)
T ss_dssp HHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSSC
T ss_pred HcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999853211179999999986667888889999999999999999999999886 99
Q ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCccc--cc
Q 005047 505 VLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRA--SK 582 (716)
Q Consensus 505 ~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~--~~ 582 (716)
+++|||||||+||++|||||.|++.+++|+|.|+|+|+|+ +|+|||++|||+.+.+++++.+.+.|+++++|... .+
T Consensus 244 v~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~-~rvlV~~~i~d~p~~~~~i~~~~~~Ga~v~~G~~~~~~g 322 (463)
T 2h5g_A 244 VMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNAL-ETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYL 322 (463)
T ss_dssp BCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSE-EEEEEEGGGTTSHHHHHHHHHHHHTTCEEEECHHHHC--
T ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccC-cEEEEeccccchHHHHHHHHHHHhCCCEEEeCCcccccC
Confidence 9999999999999999999999999999999995599999 99999999993258888888888888888765432 12
Q ss_pred cccC-CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcc
Q 005047 583 LLQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARF 661 (716)
Q Consensus 583 ~~pv-~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~ 661 (716)
++ + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++++|++++++|+|+||++....+.+||
T Consensus 323 ~~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~Pf 401 (463)
T 2h5g_A 323 TF-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRF 401 (463)
T ss_dssp --------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTT
T ss_pred cc-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCCCCCC
Confidence 22 2 478999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred cCcceeeccccccccccccchhcccEEEEEEEcCceeee--C-CCCceeeeccccC
Q 005047 662 GLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--G-DQGVVYTHKNLAL 714 (716)
Q Consensus 662 g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~~~~~--~-~~~~~~~~~~~~~ 714 (716)
||.++||+|+++.+++|++|+++||+.|+|+++.++.|+ + .....|+|+.+++
T Consensus 402 GG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~~~ 457 (463)
T 2h5g_A 402 GLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 457 (463)
T ss_dssp TSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEECCC
T ss_pred CCCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccCcc
Confidence 999999997555555799999999999999999999994 2 2246899987754
No 6
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=1.6e-80 Score=699.52 Aligned_cols=399 Identities=17% Similarity=0.181 Sum_probs=350.7
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 124 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPL-- 124 (504)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5688999999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++.+.+. .+...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 125 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 192 (504)
T 3ek1_A 125 --AEA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA--PQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPA 192 (504)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--ccccccceeeccCceEEEEECCCcchHHHHHHHHHHH
Confidence 122 24677888888988876543 2333221 12356788999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 193 LaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 268 (504)
T 3ek1_A 193 LAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA 268 (504)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhh
Confidence 9999999999999999999999999987 8 99999999996 6678888999999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 269 ~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 346 (504)
T 3ek1_A 269 PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCA-NRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEP 346 (504)
T ss_dssp GGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSE-EEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCC-CEEEEehhHH-HHHHHHHHHHHhhcccCCCccc
Confidence 9999999999999999999999999999999999987 99999 9999999999 799999999998752
Q ss_pred ---------------------------CEE-ecCccccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 005047 572 ---------------------------VGL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 615 (716)
Q Consensus 572 ---------------------------~~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 615 (716)
+++ .|+.+..++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 347 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 426 (504)
T 3ek1_A 347 GVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQ 426 (504)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHH
Confidence 122 2333222333 5 2 46899999999999999999999999999
Q ss_pred HHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEEcC
Q 005047 616 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 695 (716)
Q Consensus 616 aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~ 695 (716)
+|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++.
T Consensus 427 aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~v~~~~ 502 (504)
T 3ek1_A 427 ANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLG----REGSKYGIEEYLETKYICSAY 502 (504)
T ss_dssp HHCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSTTTSGGGGEEEEEEEEEC
T ss_pred HhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCC----CCCcHHHHHHhhceEEEEEec
Confidence 9999999999999999999999999999999999998777788999999999987 467999999999999999876
Q ss_pred c
Q 005047 696 G 696 (716)
Q Consensus 696 ~ 696 (716)
+
T Consensus 503 g 503 (504)
T 3ek1_A 503 K 503 (504)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=3.8e-80 Score=694.41 Aligned_cols=397 Identities=15% Similarity=0.154 Sum_probs=349.2
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (484)
T 3ifg_A 33 FDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPL-- 104 (484)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 4578999999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++.+.+. .+...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 105 --~~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 172 (484)
T 3ifg_A 105 --AEA--------KGEIAYAASFIEWFAEEGKRVAGDTLPT--PDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPA 172 (484)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHhhcCccccc--cCCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHH
Confidence 122 24788889999998876543 3333321 12356788999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa 248 (484)
T 3ifg_A 173 LAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA 248 (484)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTG
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999996 567888899999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 502 --~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 249 ~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 326 (484)
T 3ifg_A 249 PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCT-NRFFVHERVY-DAFADKLAAAVSKLKVGRGTES 326 (484)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCC-CEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCC-CeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 39999999999999999999999999999999999987 99999 9999999999 799999999998753
Q ss_pred ---------------------------CEE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 572 ---------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 572 ---------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 327 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 406 (484)
T 3ifg_A 327 GATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELV 406 (484)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHH
Confidence 122 244321 2333 5 2 478999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|++
T Consensus 407 ~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~~~~~k~v~~ 482 (484)
T 3ifg_A 407 RLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLG----REGSHYGIDDYVVIKYLCV 482 (484)
T ss_dssp HHHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEEC----CBSTTTTTGGGEEEEEEEE
T ss_pred HHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCC----CCchHHHHHHhhceEEEEE
Confidence 999999999999999999999999999999999999998767788999999999987 4679999999999999986
Q ss_pred c
Q 005047 694 G 694 (716)
Q Consensus 694 ~ 694 (716)
+
T Consensus 483 ~ 483 (484)
T 3ifg_A 483 A 483 (484)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=3.5e-80 Score=697.02 Aligned_cols=412 Identities=16% Similarity=0.161 Sum_probs=348.2
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 32 ~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 103 (506)
T 3rh9_A 32 YNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPW-- 103 (506)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4578999999999988 89999999999999999999999999999999999999999999999988875442
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEee-cceeEEEEEcCC-Cch-hHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RPD-ALVQIASL 423 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~-~PlGVv~~I~p~-~P~-~~~~~~~~ 423 (716)
.++ ..|+..+++.+++++...+.. +...+. ..+...++++ +|+|||++|+|| ||. +++++++|
T Consensus 104 --~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 170 (506)
T 3rh9_A 104 --KEA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA 170 (506)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHHH
Confidence 122 236777788888877655432 332221 1345678888 999999999998 685 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005047 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (716)
Q Consensus 424 ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 501 (716)
||++||+||+|||+.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++|
T Consensus 171 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 171 ALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999986 8 99999999997 667888888899999999999999999999988
Q ss_pred C---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC------
Q 005047 502 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------ 571 (716)
Q Consensus 502 ~---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 571 (716)
. ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 324 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCA-NRIFVHEKVA-DAFGQKLAERVNKMTVGDGMN 324 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSC-CEEEEETTTH-HHHHHHHHHHHHHCCBSCTTS
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccC-cEEEEcHHHH-HHHHHHHHHHHHhccCCCCcc
Confidence 3 9999999999999999999999999999999999987 99999 9999999999 799999999998752
Q ss_pred ----------------------------CEE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 005047 572 ----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 611 (716)
Q Consensus 572 ----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~de 611 (716)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+||
T Consensus 325 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 404 (506)
T 3rh9_A 325 DGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEE 404 (506)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHH
Confidence 223 244321 2333 5 2 4689999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEE
Q 005047 612 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 691 (716)
Q Consensus 612 Ai~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v 691 (716)
||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+|
T Consensus 405 Ai~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v 480 (506)
T 3rh9_A 405 VIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTV 480 (506)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEE
T ss_pred HHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCC----cCccHHHHHHhcceEEE
Confidence 99999999999999999999999999999999999999998877888999999999986 46799999999999999
Q ss_pred EEcCceee---eCCCCceeeec
Q 005047 692 LRGNGHVV---DGDQGVVYTHK 710 (716)
Q Consensus 692 ~~~~~~~~---~~~~~~~~~~~ 710 (716)
+++.++.- ++-----|.|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~ 502 (506)
T 3rh9_A 481 PRGFAENLYFQSHHHHHHWSHP 502 (506)
T ss_dssp EEC-------------------
T ss_pred EEcCccceeecccccccccCcc
Confidence 99876532 33333445553
No 9
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=1.1e-79 Score=693.62 Aligned_cols=401 Identities=21% Similarity=0.230 Sum_probs=346.4
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (505)
T 3prl_A 32 SAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK- 104 (505)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5678999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCC---CeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~---~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
++ ..|+..+++.+++++...+ ..+...+....+. +...+++|+|+|||++|+|| ||. +.++++
T Consensus 105 ---ea--------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 173 (505)
T 3prl_A 105 ---SA--------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKI 173 (505)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHH
Confidence 22 2356667777777765432 2233222111111 45678899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 174 a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 174 APALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999997 6778888999999999999999999999999
Q ss_pred hcC-CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC------
Q 005047 500 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------ 571 (716)
Q Consensus 500 ~a~-~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 571 (716)
.+. ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~ 327 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAI-KRVFVQDSVA-DQLVANIKELVEQLTVGSPED 327 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSE-EEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTT
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccC-ceEEEeHHHH-HHHHHHHHHHHHhcccCCCCC
Confidence 886 9999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ---------------------------CEEe-cCccccccc-c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 005047 572 ---------------------------VGLF-GGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 616 (716)
Q Consensus 572 ---------------------------~~~~-g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 616 (716)
++++ |+.+...|+ | | ++|++++||+||||++|++|+|+||||+++
T Consensus 328 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~a 407 (505)
T 3prl_A 328 DADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLS 407 (505)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHH
T ss_pred cCcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHH
Confidence 2222 333222233 5 2 468999999999999999999999999999
Q ss_pred HhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcC-CCCCCcccCcceeeccccccccccccchhcccEEEEEEEcC
Q 005047 617 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 695 (716)
Q Consensus 617 N~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~-~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~ 695 (716)
|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||.++||+| +++|++|+++||+.|+|+++.
T Consensus 408 N~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~G----r~~g~~~~~~f~~~k~v~~~~ 483 (505)
T 3prl_A 408 NQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLG----VQGIKPSLLSMTRERVTVLNL 483 (505)
T ss_dssp HTSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCC----cCccHHHHHHhhceEEEEEeC
Confidence 99999999999999999999999999999999999765 4578999999999986 467999999999999998875
Q ss_pred c
Q 005047 696 G 696 (716)
Q Consensus 696 ~ 696 (716)
+
T Consensus 484 ~ 484 (505)
T 3prl_A 484 A 484 (505)
T ss_dssp -
T ss_pred C
Confidence 3
No 10
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=9.9e-80 Score=692.71 Aligned_cols=400 Identities=14% Similarity=0.140 Sum_probs=349.3
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 45 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 116 (498)
T 4f3x_A 45 LNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI-- 116 (498)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5688999999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. ..|+...++.+++++.+.+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 117 --~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (498)
T 4f3x_A 117 --NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPA 185 (498)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHHH
Confidence 1221 23677888888888765543 23332211 2356788999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+|||+.||+|+.+|++++.+ +||+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 186 LaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 261 (498)
T 4f3x_A 186 IGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAAK 261 (498)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 677888899999999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc---------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE--------- 570 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~--------- 570 (716)
.||++||||||||+||++|||+|+|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 262 ~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~ 339 (498)
T 4f3x_A 262 TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAA-CRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTE 339 (498)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCE-EEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGG
T ss_pred hCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCC-ceEEecHHHH-HHHHHHHHHHHHhcccCCCcccc
Confidence 39999999999999999999999999999999999987 99999 9999999999 79999999988754
Q ss_pred -------------------------CC-EEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 571 -------------------------GV-GLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 571 -------------------------~~-~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
|+ ++. |+.+. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 340 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 419 (498)
T 4f3x_A 340 NEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAV 419 (498)
T ss_dssp CSSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHH
T ss_pred CccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHH
Confidence 22 332 44321 2333 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|++
T Consensus 420 ~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~t~~k~v~~ 495 (498)
T 4f3x_A 420 AWANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYG----KDMSVYALEDYTAVRHIMI 495 (498)
T ss_dssp HHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEEC----CBSHHHHHHHTEEEEEEEE
T ss_pred HHHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcC----ccchHHHHHHhhceEEEEE
Confidence 999999999999999999999999999999999999998777788999999999986 4679999999999999988
Q ss_pred cCc
Q 005047 694 GNG 696 (716)
Q Consensus 694 ~~~ 696 (716)
+.+
T Consensus 496 ~~g 498 (498)
T 4f3x_A 496 NHG 498 (498)
T ss_dssp ECC
T ss_pred eCC
Confidence 653
No 11
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=9.9e-80 Score=690.38 Aligned_cols=397 Identities=17% Similarity=0.167 Sum_probs=342.1
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 9 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 80 (484)
T 3ros_A 9 VNPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLL-- 80 (484)
T ss_dssp EETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 3578898899988888 88999999999999999999999999999999999999999999999988876442
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. .|+...++.+++++...+. .+...+. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 81 --~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 147 (484)
T 3ros_A 81 --SESK--------EEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPN 147 (484)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHH
Confidence 2322 2455555555555443221 2222211 1345678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| ++++++ |..||+||+|+||||+++||.|++.+.
T Consensus 148 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa 222 (484)
T 3ros_A 148 FIVGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAG 222 (484)
T ss_dssp HHHTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999996 566788 888999999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 223 ~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 300 (484)
T 3ros_A 223 KNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSS-KRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEA 300 (484)
T ss_dssp HTTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSC-CEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCC-ceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ---------------------------CEE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 572 ---------------------------VGL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 572 ---------------------------~~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
+++ .||.. ..++| | | ++|++++||+||||++|++|+|+||||
T Consensus 301 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 380 (484)
T 3ros_A 301 DTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAI 380 (484)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHH
Confidence 222 24432 12333 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|++
T Consensus 381 ~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~v~~ 456 (484)
T 3ros_A 381 QLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYG----RELSGLGLMAFVNEHLVID 456 (484)
T ss_dssp HHHHSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTCEEEEEEE
T ss_pred HHHhCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCC----cCchHHHHHHhheeEEEEE
Confidence 999999999999999999999999999999999999998777889999999999987 4679999999999999988
Q ss_pred cCc
Q 005047 694 GNG 696 (716)
Q Consensus 694 ~~~ 696 (716)
+..
T Consensus 457 ~~~ 459 (484)
T 3ros_A 457 VTK 459 (484)
T ss_dssp CGG
T ss_pred CCC
Confidence 653
No 12
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.3e-79 Score=693.97 Aligned_cols=398 Identities=14% Similarity=0.146 Sum_probs=345.8
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 35 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 107 (517)
T 3r31_A 35 IFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQ- 107 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4678999999998888 899999999999999999999999999999999999999999999999877654321
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-----ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-----IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 420 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~ 420 (716)
++ |+..+++.+++++.+.+. .++..+. ..+. .+++|+|+|||++|+|| ||. +++++
T Consensus 108 ---ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~ 170 (517)
T 3r31_A 108 ---ET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACWK 170 (517)
T ss_dssp ---HH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHHH
T ss_pred ---HH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHHH
Confidence 21 455556666666544332 2333221 2345 88999999999999998 685 67899
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 421 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 421 ~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
++|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++
T Consensus 171 ~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 171 AAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999987 8 999999999987678888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC----
Q 005047 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG---- 571 (716)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 571 (716)
.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 324 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNG-TRVFVQKKAK-ARFLENLKRRTEAMILGDP 324 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTC-EEEEEEGGGH-HHHHHHHHHHHHHCCBCCT
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccC-ceEEEeHHHH-HHHHHHHHHHHHhccCCCC
Confidence 87 49999999999999999999999999999999999997 99999 9999999999 799999999988752
Q ss_pred ------------------------------CEE-ecCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeC
Q 005047 572 ------------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 607 (716)
Q Consensus 572 ------------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 607 (716)
+++ .||. . ..++| | | ++|++++||+||||++|++|+
T Consensus 325 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 404 (517)
T 3r31_A 325 LDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFD 404 (517)
T ss_dssp TSTTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEEC
T ss_pred CCcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeC
Confidence 222 2442 0 12333 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccE
Q 005047 608 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 687 (716)
Q Consensus 608 ~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~ 687 (716)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+
T Consensus 405 ~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~ 480 (517)
T 3r31_A 405 DEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFG----RENSAAALEHYSE 480 (517)
T ss_dssp CHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEEC----CBSTGGGGGGSEE
T ss_pred CHHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998777889999999999986 4679999999999
Q ss_pred EEEEEEcCceee
Q 005047 688 TRWILRGNGHVV 699 (716)
Q Consensus 688 ~k~v~~~~~~~~ 699 (716)
.|+|+++.++.+
T Consensus 481 ~K~v~~~~~~~~ 492 (517)
T 3r31_A 481 LKTVYVSTGKVD 492 (517)
T ss_dssp EEEEEECCC---
T ss_pred eEEEEEcCCCCC
Confidence 999999877654
No 13
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=1.4e-79 Score=694.38 Aligned_cols=400 Identities=17% Similarity=0.209 Sum_probs=351.5
Q ss_pred HHHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 005047 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (716)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 344 (716)
+.+|.+|+.++++..++ .+|+++|+++|++|| +.|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 125 (520)
T 3ed6_A 52 IINPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT 125 (520)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 36788999999998888 899999999999999 8999999999999999999999999999999988776543
Q ss_pred HHhchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
. .++ ..|+..+++.+++++.+.+.. +...+.. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 126 ~----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 191 (520)
T 3ed6_A 126 L----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDSP--IPDTESKIVKEPVGVVTQITPWNYPLLQASWKI 191 (520)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeecccC--CCCCcccccccCccEEEEECCCccHHHHHHHHH
Confidence 2 122 236888888999988766543 3333211 1356788999999999999998 695 578999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 192 apALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 192 APALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 8 99999999996 6788999999999999999999999999998
Q ss_pred hcC---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC----
Q 005047 500 STK---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG---- 571 (716)
Q Consensus 500 ~a~---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 571 (716)
.++ ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p 345 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAG-SRILVQNSIK-DKFEQALIDRVKKIKLGNG 345 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCC-CEEEEEHHHH-HHHHHHHHHHHTTCCBCCT
T ss_pred HhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccC-ceEEEcHHHH-HHHHHHHHHHHHhccCCCC
Confidence 873 9999999999999999999999999999999999987 99999 9999999999 799999999987752
Q ss_pred ------------------------------CEE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEe
Q 005047 572 ------------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 606 (716)
Q Consensus 572 ------------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 606 (716)
+++ .||.+. .++| | | ++|++++||+||||++|++|
T Consensus 346 ~d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 425 (520)
T 3ed6_A 346 FDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGF 425 (520)
T ss_dssp TSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEe
Confidence 122 244331 2333 5 2 46899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhccc
Q 005047 607 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 686 (716)
Q Consensus 607 ~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft 686 (716)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.++||+| +++|++|+++||
T Consensus 426 ~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----re~G~~gl~~~t 501 (520)
T 3ed6_A 426 ETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIG----RELGKEGLEEYL 501 (520)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEES----CBSHHHHHHTTE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCC----ccchHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998777788999999999986 467999999999
Q ss_pred EEEEEEEcCc
Q 005047 687 TTRWILRGNG 696 (716)
Q Consensus 687 ~~k~v~~~~~ 696 (716)
+.|+|+++.+
T Consensus 502 ~~k~v~~~~~ 511 (520)
T 3ed6_A 502 VSKHILTNTN 511 (520)
T ss_dssp EEEEEEEESS
T ss_pred ceEEEEEcCC
Confidence 9999998765
No 14
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=4.6e-79 Score=688.67 Aligned_cols=398 Identities=15% Similarity=0.155 Sum_probs=349.7
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 112 (503)
T 1a4s_A 41 FEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI-- 112 (503)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678999999998888 88999999999999999999999999999999999999999999999987765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++++.+. .++..+.. .+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 113 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 179 (503)
T 1a4s_A 113 --TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPA 179 (503)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHHH
Confidence 122 24678888888888765543 24333221 234678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
|++||+||+||||.||+|+.+|++++++ + ||+|++|+|+| + ++++.|..||+||+|+||||+++||.|++.+
T Consensus 180 LaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 254 (503)
T 1a4s_A 180 LACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA 254 (503)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999999999999999986 8 99999999996 6 7888899999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 502 --~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 255 ~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 332 (503)
T 1a4s_A 255 KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNG-TRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLT 332 (503)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCC-CEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCC-cEEEEehHHH-HHHHHHHHHHHHhcCCCCCccc
Confidence 59999999999999999999999999999999999987 99999 9999999999 799999999988652
Q ss_pred ---------------------------CEE-ecCccc--------cccc--c-C-----CCCccccccccCceEEEEEeC
Q 005047 572 ---------------------------VGL-FGGPRA--------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 607 (716)
Q Consensus 572 ---------------------------~~~-~g~~~~--------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 607 (716)
+++ .|+... .++| | | ++|++++||+||||++|++|+
T Consensus 333 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 412 (503)
T 1a4s_A 333 ETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFD 412 (503)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEEC
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecC
Confidence 233 244332 2433 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccE
Q 005047 608 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 687 (716)
Q Consensus 608 ~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~ 687 (716)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++
T Consensus 413 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~ 488 (503)
T 1a4s_A 413 TEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFG----RENGQATVDYYSQ 488 (503)
T ss_dssp CHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSTTGGGGGSEE
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998777778999999999986 4679999999999
Q ss_pred EEEEEEcCce
Q 005047 688 TRWILRGNGH 697 (716)
Q Consensus 688 ~k~v~~~~~~ 697 (716)
.|+|+++.++
T Consensus 489 ~k~v~~~~~~ 498 (503)
T 1a4s_A 489 LKTVIVEMGD 498 (503)
T ss_dssp EEEEEECCSC
T ss_pred ceEEEEccCC
Confidence 9999987665
No 15
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=4.5e-79 Score=691.35 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=350.0
Q ss_pred HHHhc-CCcceeEEecCCccccchhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 005047 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (716)
Q Consensus 268 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 344 (716)
.+|.+ |+.++++..++ .+++++|+++|++|| +.|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 43 ~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 116 (528)
T 3u4j_A 43 VSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP 116 (528)
T ss_dssp ECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788 99999998888 899999999999999 7899999999999999999999999999999998876543
Q ss_pred HHhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
. .++ ..|+...++.+++++...+. .++..+.. ..+...+++++|+|||++|+|| ||. ++++++
T Consensus 117 ~----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 182 (528)
T 3u4j_A 117 I----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERV 182 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHH
Confidence 2 122 23667777777777755432 23322211 1356788999999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+||||.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 183 PWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6778888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC----
Q 005047 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG---- 571 (716)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 571 (716)
.+ .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||++|| |+|+++|+++++++.
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 336 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISG-SRLLVQEGIR-DALMERLLDISRKVAFGDP 336 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEGGGH-HHHHHHHHHHHHHCCEECT
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCC-CEEEEechHH-HHHHHHHHHHHHhhcCCCC
Confidence 77 39999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ------------------------------CEEe-cCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 ------------------------------VGLF-GGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 ------------------------------~~~~-g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
++++ |+.+. .++| | | ++|++++||+||||++|++|+|+
T Consensus 337 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 416 (528)
T 3u4j_A 337 LNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTA 416 (528)
T ss_dssp TSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSH
T ss_pred CCcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCH
Confidence 2332 44321 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|
T Consensus 417 deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K 492 (528)
T 3u4j_A 417 DEAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLG----RELGRYGFDEYSQFK 492 (528)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSTTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhceE
Confidence 9999999999999999999999999999999999999999998877888999999999986 457999999999999
Q ss_pred EEEEcCceee
Q 005047 690 WILRGNGHVV 699 (716)
Q Consensus 690 ~v~~~~~~~~ 699 (716)
+|+++.++.+
T Consensus 493 ~v~~~~~~~~ 502 (528)
T 3u4j_A 493 GVHVTLGRPA 502 (528)
T ss_dssp EEEEESSCCC
T ss_pred EEEEeCCCCC
Confidence 9999877444
No 16
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=2.8e-79 Score=687.02 Aligned_cols=414 Identities=18% Similarity=0.213 Sum_probs=347.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 17 ~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 88 (486)
T 3pqa_A 17 INPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPI-- 88 (486)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4678999999988888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++...+. .+...+. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 89 --~ea--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 154 (486)
T 3pqa_A 89 --KQA--------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPA 154 (486)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHHH
Confidence 122 23566666777776654322 2332221 245778999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
|++||+||+|||+.||+|+.++++++.++++++ +|+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 155 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa 234 (486)
T 3pqa_A 155 IATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG 234 (486)
T ss_dssp HHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCC
T ss_pred HHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcC
Confidence 999999999999999999999999999988888 99999999996 667788888999999999999999999999988
Q ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCC--------
Q 005047 502 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGV-------- 572 (716)
Q Consensus 502 ~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~-------- 572 (716)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.+
T Consensus 235 ~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 312 (486)
T 3pqa_A 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISV-GMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKT 312 (486)
T ss_dssp SSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSE-EEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCC-cEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCC
Confidence 69999999999999999999999999999999999987 99999 9999999999 7999999999886531
Q ss_pred --------------------------EE-ecCccccccc-c-C----CCCccccccccCceEEEEEeCCHHHHHHHHHhc
Q 005047 573 --------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQH 619 (716)
Q Consensus 573 --------------------------~~-~g~~~~~~~~-p-v----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~ 619 (716)
++ .|+.+...|+ | | ++|++++||+||||++|++|+| ||||+++|++
T Consensus 313 ~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~ 391 (486)
T 3pqa_A 313 DVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANST 391 (486)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCS
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcC
Confidence 22 2333221223 5 2 4689999999999999999999 9999999999
Q ss_pred CCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEEEEcCce-
Q 005047 620 GSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH- 697 (716)
Q Consensus 620 ~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~~- 697 (716)
+|||++||||+|.++++++++++++|+|+||+++.+ .+.+||||.++||+| +++|++|+++||+.|+|+++.+.
T Consensus 392 ~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~f~~~k~v~~~~~~~ 467 (486)
T 3pqa_A 392 EYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLG----REGVKYAMEEMSNIKTIIISKAEN 467 (486)
T ss_dssp SCCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEES----CBSHHHHHHHTEEEEEEEEEC---
T ss_pred CCCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCC----CCCcHHHHHHhhceEEEEEcCCcc
Confidence 999999999999999999999999999999997653 358999999999986 46799999999999999987543
Q ss_pred ee--eCCCCceeeec
Q 005047 698 VV--DGDQGVVYTHK 710 (716)
Q Consensus 698 ~~--~~~~~~~~~~~ 710 (716)
++ +++----|.|.
T Consensus 468 ~~~~~~~~~~~~~~~ 482 (486)
T 3pqa_A 468 LYFQSHHHHHHWSHP 482 (486)
T ss_dssp ---------------
T ss_pred CCCCCCCccccccCc
Confidence 22 34444456654
No 17
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.3e-79 Score=692.69 Aligned_cols=401 Identities=15% Similarity=0.166 Sum_probs=347.6
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 119 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID- 119 (521)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5678999999998888 899999999999999999999999999999999999999999999999887754421
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
++ ..|+..+++.+++++.+.+.. +...+. ...+...+++++|+|||++|+|| ||. +++++++||
T Consensus 120 ---ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 186 (521)
T 4e4g_A 120 ---DA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPA 186 (521)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHH
Confidence 22 246788888888887654432 222211 12355678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+||||.||+|+.+|++++.+ + ||+|+||+|+|+.+.++.|..||+||+|+||||+++||.|++.|
T Consensus 187 LaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa~ 262 (521)
T 4e4g_A 187 IACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAM 262 (521)
T ss_dssp HHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999997555567788899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCc-cCChhhHHHHHHHHHhcC-------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKD-LACNGALNELVVELQHEG------- 571 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~-i~dd~f~~~l~~~~~~~~------- 571 (716)
.||++||||||||+||++|||||+|++.+++|+|.|+| +|+|+ +|+|||++ +| |+|+++|+++++++.
T Consensus 263 ~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~ 340 (521)
T 4e4g_A 263 NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAI-SVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDE 340 (521)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSE-EEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCT
T ss_pred cCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccC-eEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCc
Confidence 49999999999999999999999999999999999976 99999 99999999 99 799999999988752
Q ss_pred ---------------------------CEE-ecCcc------ccccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 ---------------------------VGL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 ---------------------------~~~-~g~~~------~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
+++ .||.+ ..++| | | ++|++++||+||||++|++|+|+
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 420 (521)
T 4e4g_A 341 KADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNY 420 (521)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSH
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCH
Confidence 122 24432 12333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 688 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~ 688 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +.+++|++|+++||+.
T Consensus 421 deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~G~~gl~~ft~~ 498 (521)
T 4e4g_A 421 EEALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFG--DLNQHGTDSIKFWTRT 498 (521)
T ss_dssp HHHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEES--SCCBSHHHHHHHTEEE
T ss_pred HHHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCC--CCccchHHHHHHhheE
Confidence 9999999999999999999999999999999999999999998654 367899999999986 3346799999999999
Q ss_pred EEEEEcCc
Q 005047 689 RWILRGNG 696 (716)
Q Consensus 689 k~v~~~~~ 696 (716)
|+|+++..
T Consensus 499 K~v~~~~~ 506 (521)
T 4e4g_A 499 KTITSRWP 506 (521)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99998754
No 18
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=5.2e-79 Score=687.86 Aligned_cols=399 Identities=15% Similarity=0.184 Sum_probs=349.2
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 104 (497)
T 3k2w_A 33 LSPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLL-- 104 (497)
T ss_dssp ECSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578899999998888 89999999999999999999999999999999999999999999999988765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+...++.+++++...+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 105 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 172 (497)
T 3k2w_A 105 --SVA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPA 172 (497)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHH
Confidence 122 23677788888888765543 23332211 2456788999999999999998 795 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa 248 (497)
T 3k2w_A 173 LITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSA 248 (497)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhh
Confidence 9999999999999999999999999986 8 99999999996 6678888889999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCC------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGV------ 572 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 572 (716)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~ 326 (497)
T 3k2w_A 249 EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCV-ERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDA 326 (497)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSE-EEEEEETTTH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCC-cEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999999987 99999 9999999999 7999999999987632
Q ss_pred ----------------------------EE-ecCcc--c----cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 573 ----------------------------GL-FGGPR--A----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 573 ----------------------------~~-~g~~~--~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
++ .|+.+ . .++| | | ++|++++||+||||++|++|+|+
T Consensus 327 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 406 (497)
T 3k2w_A 327 DSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSM 406 (497)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCH
Confidence 22 24431 1 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|
T Consensus 407 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~k 482 (497)
T 3k2w_A 407 EQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG----GEDGKFGLEQYLEKK 482 (497)
T ss_dssp HHHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCC----ccchHHHHHHhcceE
Confidence 9999999999999999999999999999999999999999998877788999999999986 467999999999999
Q ss_pred EEEEcCc
Q 005047 690 WILRGNG 696 (716)
Q Consensus 690 ~v~~~~~ 696 (716)
+|+++..
T Consensus 483 ~v~~~~~ 489 (497)
T 3k2w_A 483 TVYINEA 489 (497)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9988653
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=1.1e-78 Score=684.65 Aligned_cols=398 Identities=14% Similarity=0.146 Sum_probs=345.8
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 344 (716)
.+|.+|+.++++..++ .+|+++++++|++||+ .|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 40 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 113 (500)
T 1o04_A 40 VNPSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP 113 (500)
T ss_dssp EETTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4578899999998888 8899999999999999 999999999999999999999999999999998877543
Q ss_pred HHhchhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
. .++. ..|+...++.+++++...+ ..+...+. ..+...+++|+|+|||++|+|| ||. ++++++
T Consensus 114 ~----~ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 179 (500)
T 1o04_A 114 Y----VISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 179 (500)
T ss_dssp H----HHHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHH
Confidence 2 1221 1356677777887775443 23333221 2345678899999999999999 695 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 180 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 255 (500)
T 1o04_A 180 GPALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQV 255 (500)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999996 6778888889999999999999999999998
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC---
Q 005047 500 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG--- 571 (716)
Q Consensus 500 ~a~----~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~--- 571 (716)
++. ||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 256 ~aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~ 333 (500)
T 1o04_A 256 AAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAG-SRTFVQEDIY-DEFVERSVARAKSRVVGN 333 (500)
T ss_dssp HHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEHHHH-HHHHHHHHHHHHHCCBCC
T ss_pred hhhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCC-CEEEEehhHH-HHHHHHHHHHHHhCcCCC
Confidence 764 9999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred -------------------------------CEEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 -------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 -------------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
+++. |+... .++| | | ++|++++||+||||++|++|+|+
T Consensus 334 p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 413 (500)
T 1o04_A 334 PFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTI 413 (500)
T ss_dssp TTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCH
T ss_pred cccccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCH
Confidence 2232 44332 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|
T Consensus 414 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~f~~~K 489 (500)
T 1o04_A 414 EEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSG----RELGEYGLQAYTEVK 489 (500)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEES----CBSTGGGGGGGEEEE
T ss_pred HHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcceE
Confidence 9999999999999999999999999999999999999999998766678999999999886 467999999999999
Q ss_pred EEEEcC
Q 005047 690 WILRGN 695 (716)
Q Consensus 690 ~v~~~~ 695 (716)
+|+++.
T Consensus 490 ~v~~~~ 495 (500)
T 1o04_A 490 TVTVKV 495 (500)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998864
No 20
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=8.7e-79 Score=687.04 Aligned_cols=401 Identities=17% Similarity=0.179 Sum_probs=345.5
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVA 342 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~ 342 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|++++.++|.++|++++++|++|+++|++++++|++
T Consensus 28 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 101 (503)
T 3iwj_A 28 INPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCG 101 (503)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578999999998888 8999999999999999 9999999999999999999999999999999988775
Q ss_pred HHHHhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccc-cccccCCCeEEEEeecceeEEEEEcCC-Cch-hHH
Q 005047 343 AAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALV 418 (716)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~ 418 (716)
++. .++ ..|+..+++.+++++.+.+. .+... +......+...+++++|+|||++|+|| ||. +.+
T Consensus 102 k~~----~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 169 (503)
T 3iwj_A 102 KPL----DEA--------AWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMAT 169 (503)
T ss_dssp CCH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHH
T ss_pred CCH----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHH
Confidence 432 122 13566666777766654432 12211 111111345788999999999999998 685 578
Q ss_pred HHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHH
Q 005047 419 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 496 (716)
Q Consensus 419 ~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~ 496 (716)
++++|||++||+||+||||.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.
T Consensus 170 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 170 WKVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 9999999999999999999999999999999986 7 99999999997 5678888999999999999999999999
Q ss_pred HHHhc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-
Q 005047 497 IKEST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG- 571 (716)
Q Consensus 497 i~~~a---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~- 571 (716)
|++.+ .||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~ 323 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSAT-SRLILHESIA-TEFLNRIVKWIKNIKI 323 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCE-EEEEEETTTH-HHHHHHHHHHHHTCCB
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccC-CeeEEcHHHH-HHHHHHHHHHHHhccC
Confidence 99887 38999999999999999999999999999999999987 99999 9999999999 799999999888652
Q ss_pred ---------------------------------CEE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEE
Q 005047 572 ---------------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEI 605 (716)
Q Consensus 572 ---------------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~ 605 (716)
+++ .|+.+. .++| | | ++|++++||+||||++|++
T Consensus 324 g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~ 403 (503)
T 3iwj_A 324 SDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKT 403 (503)
T ss_dssp SCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEE
T ss_pred CCCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEE
Confidence 222 244321 2333 5 2 4689999999999999999
Q ss_pred eCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcc
Q 005047 606 VDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGL 685 (716)
Q Consensus 606 ~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~f 685 (716)
|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|
T Consensus 404 ~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~g~~~f 479 (503)
T 3iwj_A 404 FSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFG----RELGEWGLDNY 479 (503)
T ss_dssp ESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEEC----CBSHHHHHHTT
T ss_pred eCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCC----CcchHHHHHHh
Confidence 99999999999999999999999999999999999999999999998777788999999999986 35799999999
Q ss_pred cEEEEEEEcCc
Q 005047 686 LTTRWILRGNG 696 (716)
Q Consensus 686 t~~k~v~~~~~ 696 (716)
|+.|+|+++.+
T Consensus 480 ~~~k~v~~~~~ 490 (503)
T 3iwj_A 480 LSVKQVTQYIS 490 (503)
T ss_dssp EEEEEEEEECC
T ss_pred hCeEEEEEeCC
Confidence 99999988653
No 21
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=2e-78 Score=681.59 Aligned_cols=397 Identities=17% Similarity=0.165 Sum_probs=348.7
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|+.++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 30 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 102 (481)
T 3jz4_A 30 TNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLA- 102 (481)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 5678999999998888 899999999999999999999999999999999999999999999998877654321
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
++ ..|+..+++.+++++.... ..+...+. ...+...+++++|+|||++|+|| ||. +.++++++|
T Consensus 103 ---~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 169 (481)
T 3jz4_A 103 ---EA--------KGEISYAASFIEWFAEEGKRIYGDTIPG--HQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPA 169 (481)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHH
Confidence 22 2477888888888876543 33433321 12356788999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 170 LaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 170 LAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999996 6678888989999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
||+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 323 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCA-NRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDN 323 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSE-EEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTST
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCC-cEEEEeHHHH-HHHHHHHHHHHHhccCCCCccC
Confidence 9999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ---------------------------CEEe-cCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 572 ---------------------------VGLF-GGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 572 ---------------------------~~~~-g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
+++. |+.. ..++| | | ++|++++||+||||++|++|+|+||||
T Consensus 324 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 403 (481)
T 3jz4_A 324 GVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVI 403 (481)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHH
Confidence 2222 4432 12233 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||.++||+| +++|++|+++||+.|+|++
T Consensus 404 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~t~~k~v~~ 479 (481)
T 3jz4_A 404 AQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG----REGSKYGIEDYLEIKYMCI 479 (481)
T ss_dssp HHHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCC----CCchHHHHHHhhceeEEEE
Confidence 999999999999999999999999999999999999998777788999999999986 4679999999999999987
Q ss_pred c
Q 005047 694 G 694 (716)
Q Consensus 694 ~ 694 (716)
+
T Consensus 480 ~ 480 (481)
T 3jz4_A 480 G 480 (481)
T ss_dssp E
T ss_pred e
Confidence 5
No 22
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=2e-78 Score=681.59 Aligned_cols=398 Identities=15% Similarity=0.147 Sum_probs=345.9
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 43 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 114 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPL-- 114 (495)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5688999999998888 88999999999999999999999999999999999999999999999988775442
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++.. .|+..+++.+++++...+ ..++..+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 115 --~ea~~-------~Ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 183 (495)
T 1wnd_A 115 --HSAFN-------DEIPAIVDVFRFFAGAARCLNGLAAGEY--LEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPA 183 (495)
T ss_dssp --HHHHH-------THHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHHHHhcCccccCC--CCCceeEEeeecCCeEEEECCCcchHHHHHHHHHHH
Confidence 12211 156777788888775543 234333221 1245678899999999999999 695 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+|||+.||+|+.+|++++.+ +||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 184 LaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa~ 259 (495)
T 1wnd_A 184 LAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259 (495)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGG
T ss_pred HHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 667788888899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc---------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE--------- 570 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~--------- 570 (716)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 260 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 337 (495)
T 1wnd_A 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAA-CRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDES 337 (495)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCC-CEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTT
T ss_pred cCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCC-cEEEecchhH-HHHHHHHHHHHHhccCCCCccCC
Confidence 49999999999999999999999999999999999987 99999 9999999999 79999999988764
Q ss_pred -------------------------C-CEEe-cCc-cc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 571 -------------------------G-VGLF-GGP-RA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 571 -------------------------~-~~~~-g~~-~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
| +++. ||. .. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 338 ~~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 417 (495)
T 1wnd_A 338 TELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVV 417 (495)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHH
T ss_pred CCccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHH
Confidence 3 4443 544 21 2333 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.|+|++
T Consensus 418 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~f~~~k~v~~ 493 (495)
T 1wnd_A 418 NWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYG----KDMSLYGLEDYTVVRHVMV 493 (495)
T ss_dssp HHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCC----ccchHHHHHHhhCeEEEEe
Confidence 999999999999999999999999999999999999997766788999999999886 3679999999999999976
Q ss_pred c
Q 005047 694 G 694 (716)
Q Consensus 694 ~ 694 (716)
+
T Consensus 494 ~ 494 (495)
T 1wnd_A 494 K 494 (495)
T ss_dssp E
T ss_pred c
Confidence 3
No 23
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=6.2e-79 Score=688.56 Aligned_cols=400 Identities=15% Similarity=0.180 Sum_probs=346.1
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 57 ~nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 130 (517)
T 2o2p_A 57 INPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVY 130 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH
Confidence 4578999999999988 8899999999999999 9999999999999999999999999999999987765432
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-cccccccc-ccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRT-ELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
.++. ..|+..+++.+++++.+.+. .++..+.. ....+...+++|+|+|||++|+|| ||. +.++++
T Consensus 131 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 199 (517)
T 2o2p_A 131 ----TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKT 199 (517)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHH
Confidence 1221 13567788888888765543 34332211 002234678899999999999998 685 578999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 200 a~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~ 275 (517)
T 2o2p_A 200 AACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMK 275 (517)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 8 99999999997 5678888889999999999999999999988
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC---
Q 005047 500 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG--- 571 (716)
Q Consensus 500 ~a~----~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~--- 571 (716)
.+. ||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 276 ~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~~~vGd 353 (517)
T 2o2p_A 276 SCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAA-GRLFVEESIH-NQFVQKVVEEVEKMKIGN 353 (517)
T ss_dssp HHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEHHHH-HHHHHHHHHHHTTCCBSC
T ss_pred HhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCC-eEEEEeHHHH-HHHHHHHHHHHHhcCCCC
Confidence 764 9999999999999999999999999999999999986 99999 9999999999 799999999887652
Q ss_pred -------------------------------CEE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCC-
Q 005047 572 -------------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD- 608 (716)
Q Consensus 572 -------------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~- 608 (716)
+++ .||... .++| | | ++|++++||+||||++|++|+|
T Consensus 354 p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 433 (517)
T 2o2p_A 354 PLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADG 433 (517)
T ss_dssp TTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTT
T ss_pred CCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCC
Confidence 222 244322 2333 5 2 4689999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccE
Q 005047 609 -VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 687 (716)
Q Consensus 609 -~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~ 687 (716)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++
T Consensus 434 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~~~ 509 (517)
T 2o2p_A 434 DVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFG----KDLGEAALNEYLR 509 (517)
T ss_dssp CSHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEEC----CBSHHHHHHTTEE
T ss_pred CHHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcC----ccChHHHHHHhCC
Confidence 99999999999999999999999999999999999999999997766778999999999986 4679999999999
Q ss_pred EEEEEEc
Q 005047 688 TRWILRG 694 (716)
Q Consensus 688 ~k~v~~~ 694 (716)
.|+|+++
T Consensus 510 ~k~v~~~ 516 (517)
T 2o2p_A 510 IKTVTFE 516 (517)
T ss_dssp EEEEEEE
T ss_pred ceEEEee
Confidence 9999864
No 24
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=1.8e-78 Score=682.87 Aligned_cols=398 Identities=16% Similarity=0.155 Sum_probs=345.5
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 344 (716)
.+|.+|+.++++..++ .+|+++++++|++||+ .|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 41 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 114 (501)
T 1bxs_A 41 FNPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKL 114 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578899999999888 8899999999999999 999999999999999999999999999999998887544
Q ss_pred HHhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
. .++. ..|+...++.+++++...+. .+...+. ..+...+++|+|+|||++|+|| ||. ++++++
T Consensus 115 ~----~e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 180 (501)
T 1bxs_A 115 F----SNAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKI 180 (501)
T ss_dssp H----HHHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHHH
Confidence 2 1221 13666777777777654432 3332221 2345678899999999999999 695 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 181 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~ 256 (501)
T 1bxs_A 181 GPALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKE 256 (501)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999997 6778888889999999999999999999998
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC---
Q 005047 500 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG--- 571 (716)
Q Consensus 500 ~a~----~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~--- 571 (716)
.+. ||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 257 ~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~ 334 (501)
T 1bxs_A 257 AAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAA-SRLFVEESIY-DEFVRRSVERAKKYVLGN 334 (501)
T ss_dssp HHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCC-CEEEEEHHHH-HHHHHHHHHHHTCCCBSC
T ss_pred HhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCC-CEEEEchhHH-HHHHHHHHHHHHhcCCCC
Confidence 754 9999999999999999999999999999999999987 99999 9999999999 799999999887642
Q ss_pred -------------------------------CEEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 -------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 -------------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
+++. ||... .++| | | ++|++++||+||||++|++|+|+
T Consensus 335 p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 414 (501)
T 1bxs_A 335 PLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSL 414 (501)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCH
T ss_pred CcccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCH
Confidence 2232 44321 2333 5 2 36899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|
T Consensus 415 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G----~~~G~~~l~~f~~~K 490 (501)
T 1bxs_A 415 DDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNG----RELGEYGFHEYTEVK 490 (501)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcC----ccchHHHHHHhhCee
Confidence 9999999999999999999999999999999999999999998766678999999999886 467999999999999
Q ss_pred EEEEcC
Q 005047 690 WILRGN 695 (716)
Q Consensus 690 ~v~~~~ 695 (716)
+|+++.
T Consensus 491 ~v~~~~ 496 (501)
T 1bxs_A 491 TVTIKI 496 (501)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 998863
No 25
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=2.2e-78 Score=687.17 Aligned_cols=414 Identities=18% Similarity=0.202 Sum_probs=346.2
Q ss_pred HHHHhc-CCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 267 l~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
+.+|.+ |+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 55 ~~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW 128 (538)
T ss_dssp EECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 367889 99999999988 89999999999999999999999999999999999999999999999887765432
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhcc-cc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
.++ ..|+..+++.+++++.. .+ ..++..+. ..+...+++++|+|||++|+|| ||+ +.++++
T Consensus 129 ----~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 193 (538)
T 3qan_A 129 ----KEA--------DADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTA 193 (538)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHH
Confidence 222 22567777777777654 32 23333321 1356788999999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
+|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 194 a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 269 (538)
T 3qan_A 194 VAPIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYE 269 (538)
T ss_dssp HHHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999996 6778888989999999999999999999998
Q ss_pred hc---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHh
Q 005047 500 ST---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQH 569 (716)
Q Consensus 500 ~a---------~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~ 569 (716)
.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|++++++
T Consensus 270 ~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~ 347 (538)
T 3qan_A 270 RAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAG-SRAVIHKDVY-DEVLEKTVALAKN 347 (538)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCC-CEEEEETTTH-HHHHHHHHHHHTT
T ss_pred HhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccC-ceeEEehHHH-HHHHHHHHHHHHh
Confidence 76 57999999999999999999999999999999999987 99999 9999999999 7999999999876
Q ss_pred cCC---------------------------------EE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEE
Q 005047 570 EGV---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEI 605 (716)
Q Consensus 570 ~~~---------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~ 605 (716)
+.+ ++ .||... .++| | | ++|++++||+||||++|++
T Consensus 348 ~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~ 427 (538)
T 3qan_A 348 LTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSK 427 (538)
T ss_dssp CCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEE
T ss_pred ccCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEE
Confidence 521 12 233221 2333 5 2 4689999999999999999
Q ss_pred eCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEc-CCcCC-CCCCcccCcceeeccccccccccccchh
Q 005047 606 VDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHN-ASTRF-CDGARFGLGAEVGISTSRIHARGPVGVE 683 (716)
Q Consensus 606 ~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN-~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~ 683 (716)
|+|+||||+++|+++|||++||||+|.++++++++++++|+|+|| .++.. .+.+||||.++||+|. +++|++|++
T Consensus 428 ~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~G~~gl~ 504 (538)
T 3qan_A 428 ANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDS---KAGGPDYLA 504 (538)
T ss_dssp ESSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCC---CBTSTTTGG
T ss_pred eCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCc---ccccHHHHH
Confidence 999999999999999999999999999999999999999999999 55554 6789999999999862 467999999
Q ss_pred cccEEEEEEEcCceee---eCCCCceeeec
Q 005047 684 GLLTTRWILRGNGHVV---DGDQGVVYTHK 710 (716)
Q Consensus 684 ~ft~~k~v~~~~~~~~---~~~~~~~~~~~ 710 (716)
+||+.|+|+++.++.. ++-----|.|.
T Consensus 505 ~ft~~k~v~~~~~~~~~~~~~~~~~~~~~~ 534 (538)
T 3qan_A 505 LHMQAKTVSEMYAENLYFQSHHHHHHWSHP 534 (538)
T ss_dssp GGEEEEEEEEEC------------------
T ss_pred HhhCeEEEEEecCCccccCccccccccccc
Confidence 9999999998764322 33333445553
No 26
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-78 Score=682.40 Aligned_cols=397 Identities=16% Similarity=0.145 Sum_probs=346.9
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 29 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 102 (495)
T 3b4w_A 29 RCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPP 102 (495)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4678999999999888 8899999999999999 9999999999999999999999999999999988775432
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~ 422 (716)
.++. ..|+...++.+++++...+. .++..+. +.+...+++|+|+|||++|+|| ||. +++++++
T Consensus 103 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 168 (495)
T 3b4w_A 103 ----TIIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA 168 (495)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHHH
Confidence 1221 12567778888888765543 3433221 2344678899999999999998 685 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005047 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (716)
Q Consensus 423 ~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 501 (716)
|||++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 169 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 169 PALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999997 8 99999999998666788888899999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc-------
Q 005047 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE------- 570 (716)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~------- 570 (716)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~ 322 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQ-TRILAPRSRY-DEIVAAVTNFVTALPVGPPSD 322 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTC
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCC-eEEEEcccHH-HHHHHHHHHHHHhcCCCCCcc
Confidence 59999999999999999999999999999999999987 99999 9999999999 79999999998765
Q ss_pred ---------------------------CCEE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005047 571 ---------------------------GVGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 610 (716)
Q Consensus 571 ---------------------------~~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 610 (716)
|+++ .||... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 323 ~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 402 (495)
T 3b4w_A 323 PAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEE 402 (495)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHH
Confidence 2233 254432 2333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEE
Q 005047 611 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 690 (716)
Q Consensus 611 eAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~ 690 (716)
|||+++|+++|||++||||+|.++++++++++++|+|+||++. ..+.+||||.+.||+| +++|++|+++|++.|+
T Consensus 403 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~~k~ 477 (495)
T 3b4w_A 403 DAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIG----RENGPEGVEHFTQQKS 477 (495)
T ss_dssp HHHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcC----ccchHHHHHHhcceeE
Confidence 9999999999999999999999999999999999999999977 6678999999999986 4679999999999999
Q ss_pred EEEcC
Q 005047 691 ILRGN 695 (716)
Q Consensus 691 v~~~~ 695 (716)
|+++.
T Consensus 478 v~~~~ 482 (495)
T 3b4w_A 478 VLLPM 482 (495)
T ss_dssp EECCT
T ss_pred EEEcc
Confidence 98864
No 27
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-78 Score=683.45 Aligned_cols=399 Identities=16% Similarity=0.167 Sum_probs=350.2
Q ss_pred HHHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
+.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 46 ~~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 118 (515)
T 2d4e_A 46 SLDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL- 118 (515)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 35688999999999888 88999999999999999999999999999999999999999999999988765432
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHH
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 423 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~ 423 (716)
.++ ..|+..+++.+++++++.+. .++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 119 ---~ea--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 185 (515)
T 2d4e_A 119 ---RIV--------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAP 185 (515)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhH
Confidence 122 13677888899998876543 34433211 2345678899999999999998 795 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005047 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (716)
Q Consensus 424 ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 501 (716)
||++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++++
T Consensus 186 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~a 261 (515)
T 2d4e_A 186 ALAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNA 261 (515)
T ss_dssp HHHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999986 8 99999999996 567888888999999999999999999999887
Q ss_pred C---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC------
Q 005047 502 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------ 571 (716)
Q Consensus 502 ~---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 571 (716)
. ||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 262 a~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~ 339 (515)
T 2d4e_A 262 ADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTAS-SRLLVEEKIF-EDFVGKVVERARAIRVGHPLD 339 (515)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCC-CEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTS
T ss_pred hhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCC-eEEEEehhHH-HHHHHHHHHHHhhcccCCccc
Confidence 4 9999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ----------------------------CEE-ecCccc----------cccc--c-C----CCCccccccccCceEEEEE
Q 005047 572 ----------------------------VGL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEI 605 (716)
Q Consensus 572 ----------------------------~~~-~g~~~~----------~~~~--p-v----~~~~~~~eE~FGPVl~v~~ 605 (716)
+++ .||... .++| | | ++|++++||+||||++|++
T Consensus 340 ~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~ 419 (515)
T 2d4e_A 340 PETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIP 419 (515)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEE
T ss_pred ccCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEe
Confidence 222 244321 2333 5 3 3578999999999999999
Q ss_pred eCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcc
Q 005047 606 VDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGL 685 (716)
Q Consensus 606 ~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~f 685 (716)
|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|
T Consensus 420 ~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~ 495 (515)
T 2d4e_A 420 FKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDR----REGGTYALDFY 495 (515)
T ss_dssp ESSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCS----CBSHHHHHHHH
T ss_pred eCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999997767788999999999986 46799999999
Q ss_pred cEEEEEEEcC
Q 005047 686 LTTRWILRGN 695 (716)
Q Consensus 686 t~~k~v~~~~ 695 (716)
++.|+|+++.
T Consensus 496 ~~~K~v~~~~ 505 (515)
T 2d4e_A 496 TDLKTIALPL 505 (515)
T ss_dssp EEEEEEEEES
T ss_pred CceeEEEEcC
Confidence 9999998864
No 28
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=1.6e-77 Score=673.84 Aligned_cols=397 Identities=18% Similarity=0.196 Sum_probs=347.7
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQ-- 98 (479)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678999999999988 88999999999999999999999999999999999999999999999988765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++...+. .+...+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 99 --~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 166 (479)
T 2imp_A 99 --QLA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAPA 166 (479)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHHH
Confidence 122 24788888999998876543 34432211 1345678899999999999998 685 578999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.+.
T Consensus 167 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa 242 (479)
T 2imp_A 167 LLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAA 242 (479)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999986 7 99999999996 5678888888999999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 243 ~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 320 (479)
T 2imp_A 243 KNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCA-ERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAER 320 (479)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSC-SEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTC
T ss_pred ccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCC-cEEEEehhhH-HHHHHHHHHHHHhcccCCcccc
Confidence 9999999999999999999999999999999999987 99999 9999999999 799999999987642
Q ss_pred ----------------------------CEE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHH
Q 005047 572 ----------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 612 (716)
Q Consensus 572 ----------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deA 612 (716)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|+|||
T Consensus 321 ~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eA 400 (479)
T 2imp_A 321 NDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDA 400 (479)
T ss_dssp SSCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHH
T ss_pred CCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHH
Confidence 233 344331 233 3 5 2 46899999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEE
Q 005047 613 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 692 (716)
Q Consensus 613 i~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~ 692 (716)
|+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+
T Consensus 401 i~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~~l~~~~~~k~v~ 476 (479)
T 2imp_A 401 ISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG----GADGKHGLHEYLQTQVVY 476 (479)
T ss_dssp HHHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEES----CBSHHHHHHTTEEEEEEE
T ss_pred HHHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCC----CCchHHHHHHhcCeeEEE
Confidence 9999999999999999999999999999999999999997766778999999999986 467999999999999997
Q ss_pred Ec
Q 005047 693 RG 694 (716)
Q Consensus 693 ~~ 694 (716)
++
T Consensus 477 ~~ 478 (479)
T 2imp_A 477 LQ 478 (479)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 29
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=7.7e-78 Score=672.61 Aligned_cols=403 Identities=17% Similarity=0.149 Sum_probs=330.4
Q ss_pred chHHHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 005047 265 DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (716)
Q Consensus 265 ~~l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 344 (716)
+.+.++.+++.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++
T Consensus 8 ~~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 81 (457)
T 3lns_A 8 HHHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKP 81 (457)
T ss_dssp ---------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC
T ss_pred ccccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 3456778899999998888 8999999999999999999999999999999999999999999999999887654
Q ss_pred HHhchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005047 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (716)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~ 422 (716)
. .++...++..+...++++++.++.|... ....... ...+...+++++|+|||++|+|| ||. +++++++
T Consensus 82 ~----~ea~~~ev~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 152 (457)
T 3lns_A 82 K----DVVDLAEIGAVLHEIDFALAHLDEWVAP-VSVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLI 152 (457)
T ss_dssp H----HHHHHHTHHHHHHHHHHHHHHHHHHTSC-EEECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHHH
Confidence 3 2333233444445566666666555421 1111111 11235678899999999999998 685 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 423 ~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|||++||+||+|||+.||+|+.++++++.+ +||+|++|+|+|+.++++.|.. ++||+|+||||+++||.|++.+.
T Consensus 153 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa 227 (457)
T 3lns_A 153 GAIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAA 227 (457)
T ss_dssp HHHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999986 5999999999976567777776 68999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc--------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE-------- 570 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~-------- 570 (716)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 228 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~g 305 (457)
T 3lns_A 228 KHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAP-DYLYVHYSVK-DALLERLVERVKTELPEINSTG 305 (457)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSE-EEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTC
T ss_pred hccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCC-ceEEEcHHHH-HHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999999999999987 99999 9999999999 79999999998875
Q ss_pred -------------------CCEEecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHh-cCC
Q 005047 571 -------------------GVGLFGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGS 621 (716)
Q Consensus 571 -------------------~~~~~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~-~~~ 621 (716)
+.-+.||... .++| | | ++|++++||+||||++|++|+|+||||+++|+ ++|
T Consensus 306 pli~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~ 385 (457)
T 3lns_A 306 KLVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPK 385 (457)
T ss_dssp CCSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCC
Confidence 2123355432 2333 5 2 46899999999999999999999999999999 999
Q ss_pred CceeEEEccCHHHHHHHHHccCcceEEEcCCcC--CCCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 622 AHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 622 GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~--~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
||++||||+|.+++++|++++++|+|+||++.. ..+.+||||.++||+| +++|++|+++||+.|+|++
T Consensus 386 gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~~ 455 (457)
T 3lns_A 386 PLAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMG----EYHGHFSYLTFTHKKSVRI 455 (457)
T ss_dssp CSEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEEC----CBSHHHHHHHTEEEEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCC----CCchHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999753 3578999999999986 4679999999999999976
No 30
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=8.2e-78 Score=678.18 Aligned_cols=399 Identities=15% Similarity=0.152 Sum_probs=347.8
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~-~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 37 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 109 (501)
T 1uxt_A 37 KSPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK- 109 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 4678899999999888 8899999999999999 9999999999999999999999999999999987765432
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCC--CeEEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELAD--GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~ 421 (716)
.++ ..|+..+++.+++++.+.+.. ++..+....+. +...+++++|+|||++|+|| ||. ++++++
T Consensus 110 ---~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 178 (501)
T 1uxt_A 110 ---SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKI 178 (501)
T ss_dssp ---HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHH
Confidence 122 236788889999988765433 43332110122 34678899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHh
Q 005047 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (716)
Q Consensus 422 ~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 500 (716)
+|||++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+|..++++.|..||+||+|+||||+++||.|++.
T Consensus 179 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~ 254 (501)
T 1uxt_A 179 TYSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKV 254 (501)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHh
Confidence 9999999999999999999999999999987 8 9999999999633788889999999999999999999999998
Q ss_pred cC-CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 501 TK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 501 a~-~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 255 aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 332 (501)
T 1uxt_A 255 GGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAI-KLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDP 332 (501)
T ss_dssp HCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred cCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCC-cEEEeccchH-HHHHHHHHHHHHhccCCCcccc
Confidence 85 9999999999999999999999999999999999987 99999 9999999999 799999999988652
Q ss_pred ---------------------------CEE-ecCccccc-c-c-c-C--------CCCccccccccCceEEEEEeCCHHH
Q 005047 572 ---------------------------VGL-FGGPRASK-L-L-Q-I--------PETRLFHHEYNSMVCTVEIVDDVRA 611 (716)
Q Consensus 572 ---------------------------~~~-~g~~~~~~-~-~-p-v--------~~~~~~~eE~FGPVl~v~~~~~~de 611 (716)
+++ .||.. .+ + + | | ++|++++||+||||++|++|+|+||
T Consensus 333 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~-~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~de 411 (501)
T 1uxt_A 333 TVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR-LGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQ 411 (501)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB-CSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHH
Confidence 222 24433 23 3 3 5 2 2468999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCC-cCCCCCCcccCcceeeccccccccccccchhcccEEEE
Q 005047 612 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 690 (716)
Q Consensus 612 Ai~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~-~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~ 690 (716)
||+++|+++|||++||||+|.++++++++++++|+|+||++ +...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 412 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~k~ 487 (501)
T 1uxt_A 412 AIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVF----REGIGYAVEAVTAYKT 487 (501)
T ss_dssp HHHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEES----CBSTTTTHHHHEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCC----ccChHHHHHHhCceeE
Confidence 99999999999999999999999999999999999999997 556678999999999986 4679999999999999
Q ss_pred EEEcC
Q 005047 691 ILRGN 695 (716)
Q Consensus 691 v~~~~ 695 (716)
|+++.
T Consensus 488 v~~~~ 492 (501)
T 1uxt_A 488 IVFNY 492 (501)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98864
No 31
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=1.7e-77 Score=673.95 Aligned_cols=397 Identities=16% Similarity=0.179 Sum_probs=347.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.||+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 31 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 102 (487)
T 2w8n_A 31 QDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL-- 102 (487)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4678999999999888 88999999999999999999999999999999999999999999999988775442
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. .|+..+++.+++++...+. .++..+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 103 --~ea~--------~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 170 (487)
T 2w8n_A 103 --KEAH--------GEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA 170 (487)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHHH
Confidence 1221 3577788888888765432 34433221 1345678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEec---C-CchHHHhhcCCCCccEEEeecCHHHHHHHHH
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~---~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 499 (716)
|++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+ | +.++++.|..||+||+|+||||+++||.|++
T Consensus 171 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 171 LAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999986 7 9999999999 7 5678888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHh-cC---
Q 005047 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQH-EG--- 571 (716)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~-~~--- 571 (716)
.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|++++++ +.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~ 324 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCS-NQFLVQRGIH-DAFVKAFAEAMKKNLRVGN 324 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEE-EEEEEEHHHH-HHHHHHHHHHHHHHCCBSC
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccC-CEEEEcccHH-HHHHHHHHHHHHhhcccCC
Confidence 87 59999999999999999999999999999999999987 99999 9999999999 7999999999888 52
Q ss_pred -------------------------------CEEe-cCccc-cc--cc-c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 -------------------------------VGLF-GGPRA-SK--LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 -------------------------------~~~~-g~~~~-~~--~~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
+++. |+... .+ ++ | | ++|++++||+||||++|++|+|+
T Consensus 325 p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 404 (487)
T 2w8n_A 325 GFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTE 404 (487)
T ss_dssp TTSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCH
T ss_pred cccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCH
Confidence 2222 44322 23 34 5 3 36899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.|
T Consensus 405 ~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G----~~~G~~~l~~f~~~k 480 (487)
T 2w8n_A 405 EEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG----REGSKYGIDEYLELK 480 (487)
T ss_dssp HHHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEES----CBSTTTGGGGGEEEE
T ss_pred HHHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcC----CCchHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999998777778999999999886 467999999999999
Q ss_pred EEEEc
Q 005047 690 WILRG 694 (716)
Q Consensus 690 ~v~~~ 694 (716)
+|+++
T Consensus 481 ~v~~~ 485 (487)
T 2w8n_A 481 YVCYG 485 (487)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99874
No 32
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=1.5e-77 Score=676.51 Aligned_cols=401 Identities=16% Similarity=0.159 Sum_probs=346.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.||+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 42 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 113 (500)
T 2j6l_A 42 YCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKIL-- 113 (500)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 5678899999998888 88999999999999999999999999999999999999999999998877654332
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+...++.++++++..+ ..|...+. ...+...+++++|+|||++|+|| ||. +++++++||
T Consensus 114 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 181 (500)
T 2j6l_A 114 --VEG--------VGEVQEYVDICDYAVGLSRMIGGPILPS--ERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181 (500)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHTTTCCCBEECC--SSTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceeEEEEecccEEEEECCCcchhhHHHHHHHHH
Confidence 122 2366777777887765443 22333221 11244567889999999999999 695 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+|||+.||+|+.++++++.+++.++ +|+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 182 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa~ 261 (500)
T 2j6l_A 182 MICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQE 261 (500)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhcc
Confidence 999999999999999999999999999988889 99999999998667888888899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC--------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG-------- 571 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~-------- 571 (716)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 262 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 339 (500)
T 2j6l_A 262 RFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTA-RRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPN 339 (500)
T ss_dssp TTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred CCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCC-cEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCC
Confidence 49999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred --------------------------CEE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005047 572 --------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 614 (716)
Q Consensus 572 --------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 614 (716)
.++ .||... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 340 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 419 (500)
T 2j6l_A 340 VLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFA 419 (500)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHH
T ss_pred CccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHH
Confidence 222 344321 233 3 5 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEccCHHHHHHHH--HccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEE
Q 005047 615 HIHQHGSAHTDCIVAEDQKVAETFL--CQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 691 (716)
Q Consensus 615 ~aN~~~~GL~a~i~t~d~~~a~~~~--~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v 691 (716)
++|+++|||++||||+|.+++++++ +++++|+|+||++... .+..||||.+.||+| +++|.+|+++|++.|+|
T Consensus 420 ~aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v 495 (500)
T 2j6l_A 420 WNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG----RESGSDAWKQYMRRSTC 495 (500)
T ss_dssp HHHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSC----CEESTTGGGGGEEEEEE
T ss_pred HHhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCC----CcchHHHHHHhhceEEE
Confidence 9999999999999999999999999 7799999999986543 467899999999886 45799999999999999
Q ss_pred EEc
Q 005047 692 LRG 694 (716)
Q Consensus 692 ~~~ 694 (716)
+++
T Consensus 496 ~~~ 498 (500)
T 2j6l_A 496 TIN 498 (500)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 33
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=1.9e-77 Score=675.47 Aligned_cols=400 Identities=16% Similarity=0.186 Sum_probs=348.9
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 98 (490)
T 2ve5_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678999999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. ..|+...++.+++++.+.+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 99 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~A 166 (490)
T 2ve5_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHHH
Confidence 1221 12677777888887765432 2332221 2356678899999999999998 696 567999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 167 LaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 9999999999999999999999999987 7 99999999997 677888899999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC------
Q 005047 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------ 571 (716)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 571 (716)
.||++||||||||+||++|||++.|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d 320 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNG-TRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQD 320 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCC-CEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCC-CeEEEcHHHH-HHHHHHHHHHHHhccCCCCCC
Confidence 49999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred ----------------------------CEE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCC
Q 005047 572 ----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 608 (716)
Q Consensus 572 ----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 608 (716)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|
T Consensus 321 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~ 400 (490)
T 2ve5_A 321 ENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400 (490)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCC
Confidence 122 244331 2333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEE
Q 005047 609 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 688 (716)
Q Consensus 609 ~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~ 688 (716)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++.
T Consensus 401 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G----~~~G~~~~~~f~~~ 476 (490)
T 2ve5_A 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRI 476 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCC----CcchHHHHHHhhee
Confidence 99999999999999999999999999999999999999999998777788999999999986 45799999999999
Q ss_pred EEEEEcCce
Q 005047 689 RWILRGNGH 697 (716)
Q Consensus 689 k~v~~~~~~ 697 (716)
|+|+++.++
T Consensus 477 k~v~~~~~~ 485 (490)
T 2ve5_A 477 KSVQVELGD 485 (490)
T ss_dssp EEEEEECSC
T ss_pred EEEEEccCc
Confidence 999987653
No 34
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=7.1e-78 Score=677.47 Aligned_cols=395 Identities=16% Similarity=0.167 Sum_probs=336.3
Q ss_pred HHHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
+.+|.+|+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 45 v~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 117 (497)
T 3i44_A 45 VIDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPI- 117 (497)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 36788999999998888 89999999999999999999999999999999999999999999999988765432
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccccccccccccCCCeEEEEe-ecceeEEEEEcCC-Cch-hHHHHHHH
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASL 423 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~PlGVv~~I~p~-~P~-~~~~~~~~ 423 (716)
.++.. .|+...++.+++++...+... .+.. ...+...+++ ++|+|||++|+|| ||. +.+++++|
T Consensus 118 ---~~a~~-------~ev~~~~~~~~~~a~~~~~~~--~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (497)
T 3i44_A 118 ---DMALN-------AQTATGSSHIRNFIKAYKEFS--FQEA-LIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIP 184 (497)
T ss_dssp ---HHHHH-------THHHHHHHHHHHHHHHHHHCC--SEEE-SSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHHH-------HHHHHHHHHHHHHHHHhhccc--cccc-ccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHH
Confidence 22221 245556666666554321110 0000 0112334567 9999999999998 685 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005047 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (716)
Q Consensus 424 ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 501 (716)
||++||+||+|||+.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 185 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~a 260 (497)
T 3i44_A 185 ALLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNA 260 (497)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 8 99999999996 667888898999999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC------
Q 005047 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG------ 571 (716)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 571 (716)
.||+++|||||||+||++||| |.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 261 a~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~ 337 (497)
T 3i44_A 261 SNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAP-TRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQ 337 (497)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCC-CEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTS
T ss_pred hhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccC-CEEEEcHHHH-HHHHHHHHHHHHhccCCCCCC
Confidence 399999999999999999999 9999999999999987 99999 9999999999 799999999988652
Q ss_pred ----------------------------CEE-ecCc-cc----cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005047 572 ----------------------------VGL-FGGP-RA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 609 (716)
Q Consensus 572 ----------------------------~~~-~g~~-~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 609 (716)
+++ .|+. .. .++| | | ++|++++||+||||++|++|+|+
T Consensus 338 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 417 (497)
T 3i44_A 338 TGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTE 417 (497)
T ss_dssp CSSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSH
T ss_pred CCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCH
Confidence 223 2442 21 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEE
Q 005047 610 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 689 (716)
Q Consensus 610 deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k 689 (716)
||||+++|+++|||++||||+|.++++++++++++|+|+||. ....+.+||||.+.||+| +++|++|+++||+.|
T Consensus 418 deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K 492 (497)
T 3i44_A 418 DEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRA----REGGLWGIKEFLDTK 492 (497)
T ss_dssp HHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCC----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhccee
Confidence 999999999999999999999999999999999999999995 455678999999999986 467999999999999
Q ss_pred EEEE
Q 005047 690 WILR 693 (716)
Q Consensus 690 ~v~~ 693 (716)
+|+.
T Consensus 493 ~v~~ 496 (497)
T 3i44_A 493 AISY 496 (497)
T ss_dssp EESC
T ss_pred EEEe
Confidence 9854
No 35
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=4.6e-77 Score=675.01 Aligned_cols=400 Identities=16% Similarity=0.172 Sum_probs=341.8
Q ss_pred HHHHh-cCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 267 IIKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 267 l~~~~-tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
+.+|. +|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 55 ~~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (516)
T 1uzb_A 55 SLNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNW 128 (516)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 36788 588899998888 88999999999999999999999999999999999999999999999988775442
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~ 422 (716)
.++. .|+..+++.+++++...+ ..+...+... ..+...+++++|+|||++|+|| ||+ +++++++
T Consensus 129 ----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 195 (516)
T 1uzb_A 129 ----VEAS--------ADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIV 195 (516)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHH
Confidence 1221 356677777777764432 2232211111 1345678899999999999999 694 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHh
Q 005047 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (716)
Q Consensus 423 ~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 500 (716)
|||++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.
T Consensus 196 ~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~ 271 (516)
T 1uzb_A 196 GPVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEA 271 (516)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999986 7 99999999996 67788888889999999999999999999876
Q ss_pred c---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc
Q 005047 501 T---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE 570 (716)
Q Consensus 501 a---------~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~ 570 (716)
+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 272 aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~ 349 (516)
T 1uzb_A 272 AGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAA-SRLILTQGAY-EPVLERVLKRAERL 349 (516)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEHHHH-HHHHHHHHHHHTTC
T ss_pred hhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccC-cEEEEchHHH-HHHHHHHHHHHHhc
Confidence 5 48999999999999999999999999999999999986 99999 9999999999 79999999998764
Q ss_pred CC--------------------------------EE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeC
Q 005047 571 GV--------------------------------GL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 607 (716)
Q Consensus 571 ~~--------------------------------~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 607 (716)
.+ ++ .|+.. ..++| | | ++|++++||+||||++|++|+
T Consensus 350 ~~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~ 429 (516)
T 1uzb_A 350 SVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVK 429 (516)
T ss_dssp CBSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEES
T ss_pred cCCCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeC
Confidence 31 22 35433 12333 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC--CCCCcccCcceeeccccccccccccchhcc
Q 005047 608 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGL 685 (716)
Q Consensus 608 ~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~--~~~~p~g~g~~sG~~~~~~~~~g~~gl~~f 685 (716)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++++++|
T Consensus 430 ~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~g~~~l~~f 506 (516)
T 1uzb_A 430 DFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNA---KTGALDYLRLF 506 (516)
T ss_dssp SHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCC---CBTSHHHHHTT
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCC---ccchHHHHHHc
Confidence 999999999999999999999999999999999999999999986543 4678999999998862 24689999999
Q ss_pred cEEEEEEEc
Q 005047 686 LTTRWILRG 694 (716)
Q Consensus 686 t~~k~v~~~ 694 (716)
|+.|+|+++
T Consensus 507 ~~~k~v~~~ 515 (516)
T 1uzb_A 507 LEMKAVAER 515 (516)
T ss_dssp EEEEEEEEE
T ss_pred CCeeEEEec
Confidence 999999864
No 36
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=3e-77 Score=670.96 Aligned_cols=396 Identities=17% Similarity=0.183 Sum_probs=346.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 23 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 94 (475)
T 1euh_A 23 YEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGY-- 94 (475)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5678999999999888 88999999999999999999999999999999999999999999999988875432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCC----eEE-EEeecceeEEEEEcCC-Cch-hHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALVQ 419 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~----~~~-~~~~~PlGVv~~I~p~-~P~-~~~~ 419 (716)
.++ ..|+..+++.+++++...+. .++..+.. ..+ ... +++++|+|||++|+|| ||. +.++
T Consensus 95 --~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 162 (475)
T 1euh_A 95 --KSA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG--SFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGS 162 (475)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG--GTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCccccceeeEEEEeccceEEEECCCCchHHHHHH
Confidence 122 24777888888888765432 34332211 123 356 8899999999999998 685 6789
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHH
Q 005047 420 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (716)
Q Consensus 420 ~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i 497 (716)
+++|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| ++++++.|..||+||+|+||||+++||.|
T Consensus 163 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 999999999999999999999999999999986 7 99999999996 46688888899999999999999999999
Q ss_pred HHhc-CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC----
Q 005047 498 KEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG---- 571 (716)
Q Consensus 498 ~~~a-~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 571 (716)
++.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p 316 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAV-KRVLVMESVA-DELVEKIREKVLALTIGNP 316 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSE-EEEEEEHHHH-HHHHHHHHHHHHTSCBSCG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCC-cEEEEehhHH-HHHHHHHHHHHHhccCCCc
Confidence 9988 59999999999999999999999999999999999987 99999 9999999999 799999999987653
Q ss_pred -----------------------------CEEe-cCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 572 -----------------------------VGLF-GGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 572 -----------------------------~~~~-g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
+++. |+.. .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 317 ~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~-~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai 395 (475)
T 1euh_A 317 EDDADITPLIDTKSADYVEGLINDANDKGATALTEIKR-EGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAI 395 (475)
T ss_dssp GGTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHH
T ss_pred cccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHH
Confidence 2222 3322 233 3 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcC-CcCCCCCCcccCcceeeccccccccccccchhcccEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 692 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~-~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~ 692 (716)
+++|+++|||++||||+|.++++++++++++|+|+||+ +....+.+||||.++||+| +++|++|+++|++.|+|+
T Consensus 396 ~~an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G----~~~g~~~~~~~~~~k~v~ 471 (475)
T 1euh_A 396 EISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAG----IQGVKYSIEAMTTVKSVV 471 (475)
T ss_dssp HHHHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcC----CCccHHHHHHhCCeeEEE
Confidence 99999999999999999999999999999999999999 7666778999999999986 467999999999999998
Q ss_pred Ec
Q 005047 693 RG 694 (716)
Q Consensus 693 ~~ 694 (716)
++
T Consensus 472 ~~ 473 (475)
T 1euh_A 472 FD 473 (475)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 37
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=1.6e-77 Score=673.01 Aligned_cols=398 Identities=16% Similarity=0.117 Sum_probs=336.2
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.||.||+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|+..
T Consensus 11 ~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 82 (474)
T 4h7n_A 11 RNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLS-- 82 (474)
T ss_dssp ECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--
Confidence 4578999999998888 89999999999999999999999999999999999999999999999887765421
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
++ ..++..++..+++|+..... .+.... ....++...+..++|+|||++|+|| ||. +.+++++||
T Consensus 83 ---~~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~A 150 (474)
T 4h7n_A 83 ---IT--------VLEIDSFLASIDRWCGLAPELLQTSAK-NTSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPA 150 (474)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHHHCCEEE-ECSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHhhhhhccccccc-CCCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcc
Confidence 11 23566666677766543321 111111 1112345567788999999999998 795 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+||||.||+++..+++++.+ + +|+|++|+|+|+.+++..|..| +|+|+||||+++||.|++.+
T Consensus 151 LaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 151 LLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred hhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 9999999999999999999999998875 7 9999999999766677777765 99999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCC-------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGV------- 572 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~------- 572 (716)
.||++||||||||+||++|||++.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.+
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 302 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSI-ERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVED 302 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGG
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeec-ccccchHHHH-HHHHHHHHHHhhccccCCCcccc
Confidence 49999999999999999999999999999999999987 99999 9999999999 7999999999887532
Q ss_pred ---------------------------EEe-cCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 573 ---------------------------GLF-GGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 573 ---------------------------~~~-g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
.+. |+... .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 303 ~~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 382 (474)
T 4h7n_A 303 GAIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAV 382 (474)
T ss_dssp CSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHH
T ss_pred cccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHH
Confidence 111 22211 1233 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC--CCCCcccCcceeeccccccccccccchhcccEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 691 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~--~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v 691 (716)
+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.+.||+|. ++.|++|+++|++.|+|
T Consensus 383 ~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~---~~~G~~g~~~f~~~k~v 459 (474)
T 4h7n_A 383 YLANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGG---SRVGAAGLKRFLRKQAF 459 (474)
T ss_dssp HHHHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESC---CSSTTHHHHTTEEEEEE
T ss_pred HHHHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCC---CcchHHHHHHhCeEEEE
Confidence 999999999999999999999999999999999999986543 4678999999999862 24589999999999999
Q ss_pred EEcCc
Q 005047 692 LRGNG 696 (716)
Q Consensus 692 ~~~~~ 696 (716)
+++..
T Consensus 460 ~~~~~ 464 (474)
T 4h7n_A 460 LIKTN 464 (474)
T ss_dssp EEECS
T ss_pred EECCC
Confidence 98654
No 38
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=2.9e-77 Score=669.71 Aligned_cols=396 Identities=15% Similarity=0.213 Sum_probs=341.5
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 12 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 83 (462)
T 3etf_A 12 VNPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPI-- 83 (462)
T ss_dssp ECTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3578899999988888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..++..+++.+++++...+. .+.. +. ...+...+++++|+|||++|+|| ||. +.++++++|
T Consensus 84 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 150 (462)
T 3etf_A 84 --KQA--------RAEVTKSAALCDWYAEHGPAMLNPE-PT--LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPI 150 (462)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHHTSCE-EC--SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHhHHHhcCCc-cc--CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHH
Confidence 122 23566667777776654321 2222 11 11245678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|++|+|+|+.+.++.|..||+||+|+||||+++||.|++.+
T Consensus 151 LaaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~ 226 (462)
T 3etf_A 151 LLAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGA 226 (462)
T ss_dssp HHTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhc
Confidence 9999999999999999999999999986 7 99999999997656667788899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC--------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG-------- 571 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~-------- 571 (716)
.+|++||||||||+||++|||++.|++.+++++|.|+| .|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 227 ~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 304 (462)
T 3etf_A 227 ALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAA-KRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEE 304 (462)
T ss_dssp TTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTT
T ss_pred cCCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCC-cEEEEehhHH-HHHHHHHHHHHHhhcCCCCcccc
Confidence 49999999999999999999999999999999999987 99999 9999999999 799999999988752
Q ss_pred --------------------------CEE-ecCcc--cccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005047 572 --------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 614 (716)
Q Consensus 572 --------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 614 (716)
+++ .|+.. ..++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 305 ~~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~ 384 (462)
T 3etf_A 305 NDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALA 384 (462)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHH
Confidence 222 23332 1233 3 5 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEEEEEc
Q 005047 615 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 694 (716)
Q Consensus 615 ~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~ 694 (716)
++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+| +++|++|+++||+.|+|+++
T Consensus 385 ~an~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 385 LANDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFG----RELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HHHCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEC
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHHhceeEEEEe
Confidence 99999999999999999999999999999999999998777788999999999986 46799999999999999874
No 39
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.8e-77 Score=674.38 Aligned_cols=402 Identities=17% Similarity=0.171 Sum_probs=333.6
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (508)
T 3r64_A 33 INPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR-- 104 (508)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH--
Confidence 4578899999998888 89999999999999999999999999999999999999999999999887654432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~AL 425 (716)
.++ ..|+..+++.+++++...+......+.. ...+...+++++|+|||++|+|| ||. ++++++++||
T Consensus 105 --~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 173 (508)
T 3r64_A 105 --SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPAL 173 (508)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHH
Confidence 122 2378888999999987665432233221 12356788999999999999998 685 6789999999
Q ss_pred HhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005047 426 RSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (716)
Q Consensus 426 aaGNtvv~Kps~~tp~t~-~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 501 (716)
++||+||+|||+.||+|+ .+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 174 aaGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa 249 (508)
T 3r64_A 174 AVGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249 (508)
T ss_dssp HTTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 999999986 8 99999999996 567888888899999999999999999999876
Q ss_pred ----CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcC-----
Q 005047 502 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEG----- 571 (716)
Q Consensus 502 ----~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~----- 571 (716)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.
T Consensus 250 ~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 327 (508)
T 3r64_A 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSI-NRVIVDAAVH-DEFLEKFVEAVKNIPTGDPS 327 (508)
T ss_dssp SSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCC-SEEEEEHHHH-HHHHHHHHHHHHTCCBSCTT
T ss_pred cccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccC-cEEEEehhHH-HHHHHHHHHHHHhccCCCCc
Confidence 38999999999999999999999999999999999987 99999 9999999999 799999999998752
Q ss_pred -----------------------------CEE-ecCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005047 572 -----------------------------VGL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 613 (716)
Q Consensus 572 -----------------------------~~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 613 (716)
+++ .|+.+ .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 328 ~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~-~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 406 (508)
T 3r64_A 328 AEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI-EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAA 406 (508)
T ss_dssp SSSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE-ETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHH
T ss_pred cCCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC-CCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHH
Confidence 122 23332 233 3 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEEE
Q 005047 614 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 692 (716)
Q Consensus 614 ~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~ 692 (716)
+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|+
T Consensus 407 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~G----r~~G~~~l~~ft~~k~v~ 482 (508)
T 3r64_A 407 ELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLG----RFNGDWAIEEFTTDRWIG 482 (508)
T ss_dssp HHHTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC------------------------CCCHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCC----cCccHHHHHHhhceEEEE
Confidence 999999999999999999999999999999999999998654 677899999999886 356999999999999999
Q ss_pred EcCceee
Q 005047 693 RGNGHVV 699 (716)
Q Consensus 693 ~~~~~~~ 699 (716)
++.++.+
T Consensus 483 ~~~~~~~ 489 (508)
T 3r64_A 483 IKRSAEN 489 (508)
T ss_dssp EECCSTT
T ss_pred Eecccch
Confidence 9876544
No 40
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=6.2e-77 Score=665.84 Aligned_cols=386 Identities=21% Similarity=0.229 Sum_probs=326.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHHH
Q 005047 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (716)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (716)
.+|+++++++|++||+.|+.++.++|.++|++++++|++|+++|++++++|++++. .++...++..+..+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNE----WNAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999998876543 23333344444566777777
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005047 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (716)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~ 447 (716)
.++.|+.. .+.+.... ..+...+++++|+|||++|+|| ||. +++++++|||++||+||+||||.||+|+.+|+
T Consensus 93 ~~~~~~~~-~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAAD-EPVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSC-EECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhcc-cccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 77766531 11111111 1234578899999999999998 685 67899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCceEEecCC-chHHHhhcCCCCccEEEeecCHHHHHHHHHhc---CCCEEEecCCcceEEEcCCCCH
Q 005047 448 KVITSAIPDTVGEKLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST---KIPVLGHADGICHVYVDKSANL 523 (716)
Q Consensus 448 ~l~~~al~~alP~gvv~vv~~~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a---~~~~~lElGGk~p~iV~~dADl 523 (716)
+++.+ +||+|++|+|+|+ +++++++ .| +||+|+||||+++||.|++.| .||++||||||||+||++||||
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99986 5999999999964 5556655 46 799999999999999999877 3999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc----------------------------CCEE
Q 005047 524 DVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE----------------------------GVGL 574 (716)
Q Consensus 524 ~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~----------------------------~~~~ 574 (716)
|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++ |+++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v 319 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAP-DYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKV 319 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSC-CEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCC-cEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEE
Confidence 9999999999999987 99999 9999999999 79999999988763 1222
Q ss_pred -ecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCc
Q 005047 575 -FGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDS 644 (716)
Q Consensus 575 -~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~ 644 (716)
.||... .++| | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 320 ~~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~ 399 (469)
T 3sza_A 320 AYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSS 399 (469)
T ss_dssp EECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCC
T ss_pred EeCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 244321 2333 5 2 4689999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCcC--CCCCCcccCcceeeccccccccccccchhcccEEEEEEEcCc
Q 005047 645 AAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 696 (716)
Q Consensus 645 G~v~vN~~~~--~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~ 696 (716)
|+|+||+... ..+..||||.++||+| +++|.+|+++||+.|+|+++..
T Consensus 400 G~V~vN~~~~~~~~~~~PfGG~k~SG~G----r~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 400 GGVAANDVIVHITLHSLPFGGVGNSGMG----SYHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp SEEEESCSSGGGSCTTSCBCCCGGGEEC----CBSTHHHHHHTEEEEEEEECCS
T ss_pred ceEEEeCCCCCCCCCCCCcCCccccccC----ccchHHHHHHhhCeeEEEECCc
Confidence 9999999753 3578999999999986 4679999999999999988643
No 41
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=4.4e-77 Score=671.78 Aligned_cols=399 Identities=17% Similarity=0.184 Sum_probs=327.5
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|.++..
T Consensus 27 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (485)
T 4dng_A 27 LNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI-- 98 (485)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678999999999888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++...+.. +...+. ....+...+++++|+|||++|+|| ||. ++++++++|
T Consensus 99 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 167 (485)
T 4dng_A 99 --IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPA 167 (485)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHH
Confidence 122 236788888888887665433 332221 112356788999999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005047 425 IRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~-~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 501 (716)
|++||+||+|||+.||+++ .+|++++.+ + +|+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 168 LaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 168 IALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999 999999986 8 99999999996 556888888999999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCC-----
Q 005047 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGV----- 572 (716)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~----- 572 (716)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++.+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~ 321 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMII-NRIIVHQDVY-DEFVEKFTARVKQLPYGDQTD 321 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCE-EEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTS
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccC-CEEEEeHHHH-HHHHHHHHHHHHhccCCCCCc
Confidence 49999999999999999999999999999999999987 99999 9999999999 7999999999987532
Q ss_pred -----------------------------EE-ecCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005047 573 -----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 614 (716)
Q Consensus 573 -----------------------------~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 614 (716)
++ .|+.+ .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 322 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~-~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~ 400 (485)
T 4dng_A 322 PKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR-VGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAID 400 (485)
T ss_dssp TTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHH
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC-CCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHH
Confidence 11 13322 233 3 5 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEEEE
Q 005047 615 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 693 (716)
Q Consensus 615 ~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~ 693 (716)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|++
T Consensus 401 ~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~t~~k~v~~ 476 (485)
T 4dng_A 401 MANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVG----RFGNPWVVEEFTVTKWISI 476 (485)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEE
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999998654 678999999999886 3569999999999999988
Q ss_pred cCc
Q 005047 694 GNG 696 (716)
Q Consensus 694 ~~~ 696 (716)
+.+
T Consensus 477 ~~~ 479 (485)
T 4dng_A 477 QKQ 479 (485)
T ss_dssp EC-
T ss_pred ecC
Confidence 654
No 42
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-76 Score=666.59 Aligned_cols=399 Identities=15% Similarity=0.137 Sum_probs=343.8
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 26 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 97 (486)
T 1t90_A 26 VNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNT-- 97 (486)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678999999999888 88999999999999999999999999999999999999999999999988765432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++ ..|+..+++.+++++.+.+. .++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 98 --~~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 165 (486)
T 1t90_A 98 --KEA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMA 165 (486)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHHH
Confidence 122 23677788888887754432 23332211 1345678899999999999999 695 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 501 (716)
|++||+||+|||+.||+|+.+|++++++ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 166 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 166 IALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999986 8 99999999997556788888899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccce-EEEeCccCChhhHHHHHHHHHhcC-------
Q 005047 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVET-LLVHKDLACNGALNELVVELQHEG------- 571 (716)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~r-v~V~~~i~dd~f~~~l~~~~~~~~------- 571 (716)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|+ +| +|||++ | |+|+++|+++++++.
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~ 318 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMAC-AVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDD 318 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCE-EEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTST
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccC-CeeEEecCC-H-HHHHHHHHHHHHhcccCCCCcc
Confidence 59999999999999999999999999999999999986 99999 99 999999 9 799999999887653
Q ss_pred ---------------------------CEE-ecCcc---ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHH
Q 005047 572 ---------------------------VGL-FGGPR---ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 612 (716)
Q Consensus 572 ---------------------------~~~-~g~~~---~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deA 612 (716)
+++ .|+.+ ..++| | | ++|++++||+||||++|++|+|+|||
T Consensus 319 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~ea 398 (486)
T 1t90_A 319 GVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEA 398 (486)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHH
Confidence 122 24432 12333 5 2 36899999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEE
Q 005047 613 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 691 (716)
Q Consensus 613 i~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v 691 (716)
|+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.++||+| +++++|++|+++|++.|+|
T Consensus 399 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~g~~g~~~~~~~k~v 476 (486)
T 1t90_A 399 IEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFG--TLHANGKDSVDFYTRKKVV 476 (486)
T ss_dssp HHHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEES--SSCSSHHHHHHHTEEEEEE
T ss_pred HHHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCC--CCccchHHHHHHhhceEEE
Confidence 9999999999999999999999999999999999999986543 357899999999986 2356799999999999999
Q ss_pred EEcC
Q 005047 692 LRGN 695 (716)
Q Consensus 692 ~~~~ 695 (716)
+++.
T Consensus 477 ~~~~ 480 (486)
T 1t90_A 477 TARY 480 (486)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8753
No 43
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-76 Score=663.11 Aligned_cols=391 Identities=17% Similarity=0.178 Sum_probs=318.0
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 28 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 99 (478)
T 3ty7_A 28 INPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPL-- 99 (478)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5678999999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. ..|+...++.+++++...+. .+.. . +...+++++|+|||++|+|| ||. +.++++++|
T Consensus 100 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (478)
T 3ty7_A 100 --SLSE-------RVHYQMGLNHFVAARDALDNYEFEE-R------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA 163 (478)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHHHHCCSEE-E------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhhccc-C------CccceEEecCceEEEEECCCcchHHHHHHHHHHH
Confidence 2221 12556666667766643322 1211 1 12357889999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|++|+|+| +.++++.|..||+||+|+||||+++|+.|++.+.
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 164 FAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 9999999999999999999999999987 7 99999999996 6678888989999999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc--------
Q 005047 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE-------- 570 (716)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~-------- 570 (716)
+|++||||||||+||++|||||.|++.+++|+|.|+| +|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 317 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAG-TRVLVPNKIK-DAFLAELKEQFSQVRVGNPRED 317 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCC-CEEEEETTTH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCC-CeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999999987 99999 9999999999 79999999998864
Q ss_pred --------------------------CCEEe-cCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005047 571 --------------------------GVGLF-GGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 610 (716)
Q Consensus 571 --------------------------~~~~~-g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 610 (716)
|+++. |+. . ..++| | | ++|++++||+||||++|++|+|+|
T Consensus 318 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~ 397 (478)
T 3ty7_A 318 GTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLD 397 (478)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHH
Confidence 22332 441 1 12333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCCCCCCcccCcceeeccccccccccccchhcccEEEE
Q 005047 611 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 690 (716)
Q Consensus 611 eAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~ 690 (716)
|||+++|+++|||++||||+|.++++++++++++|+|+||+ ....+..||||.++||+| +++|++|+++||+.|+
T Consensus 398 eAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G----~~~G~~~l~~~t~~k~ 472 (478)
T 3ty7_A 398 EAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLG----REWGDYGIEEFLEVKS 472 (478)
T ss_dssp HHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEE
T ss_pred HHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcCeEE
Confidence 99999999999999999999999999999999999999999 555677899999999986 4679999999999999
Q ss_pred EEE
Q 005047 691 ILR 693 (716)
Q Consensus 691 v~~ 693 (716)
|+.
T Consensus 473 v~~ 475 (478)
T 3ty7_A 473 IAG 475 (478)
T ss_dssp EET
T ss_pred EEE
Confidence 873
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=1.1e-75 Score=663.39 Aligned_cols=400 Identities=15% Similarity=0.150 Sum_probs=335.2
Q ss_pred HHHhcCCcc-eeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 268 ~~~~tg~~i-GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
.+|.+|+.+ +++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 12 ~nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 85 (510)
T 1ez0_A 12 TNAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV 85 (510)
T ss_dssp ECTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 357889999 6998888 889999999999999999999999999999999999999999999999888765432
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc---ccccc----cccccCCC-eEEEEeecceeEEEEEcCC-Cchh-
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADG-LILEKTSCPLGVLLIVFES-RPDA- 416 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~-~~~~~~~~PlGVv~~I~p~-~P~~- 416 (716)
++. .|+...++.+++++...+. .+... +.. .+.+ ...+++|+|+|||++|+|| ||+.
T Consensus 86 ----~a~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 152 (510)
T 1ez0_A 86 ----RLT--------GEIARTANQLRLFADVVNSGSYHQAILDTPNPTR-APLPKPDIRRQQIALGPVAVFGASNFPLAF 152 (510)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTC-SSSCBCCEEEEEEECSCEEEECCSSCTTTT
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHhCcccccccccccccc-CCCCCCCceEEEecCcEEEEECCccchhhh
Confidence 221 2344455555554432211 11111 100 0111 1357889999999999999 7954
Q ss_pred H--HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHH
Q 005047 417 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 492 (716)
Q Consensus 417 ~--~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~ 492 (716)
+ .+++++||++||+||+|||+.||+|+.++++++.+++.++ +|+|++|+|+| +.++++.|..||+||+|+||||++
T Consensus 153 ~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~ 232 (510)
T 1ez0_A 153 SAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVG 232 (510)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHH
Confidence 3 4999999999999999999999999999999999888888 99999999997 677888888899999999999999
Q ss_pred HHHHHHHhcC-----CCEEEecCCcceEEEcCCCCHH--HHHHHHHHhcCCCCC-ccccccceEEEeCc-cCChhhHHHH
Q 005047 493 LVSQIKESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMVETLLVHKD-LACNGALNEL 563 (716)
Q Consensus 493 ~g~~i~~~a~-----~~~~lElGGk~p~iV~~dADl~--~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~-i~dd~f~~~l 563 (716)
+||.|++.+. ||+++|||||||+||++|||+| .|++.+++++|.|+| +|+|+ +|+|||++ +| |+|+++|
T Consensus 233 ~G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~~i~-d~f~~~l 310 (510)
T 1ez0_A 233 GGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKP-GVVFALNTPET-QAFIETA 310 (510)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCC-CEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCC-CEEEEeCCccH-HHHHHHH
Confidence 9999998773 9999999999999999999999 999999999999987 99999 99999999 99 7999999
Q ss_pred HHHHHhc-------------------------CCEEe-cCccccccc--c-C-----CC---CccccccccCceEEEEEe
Q 005047 564 VVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIV 606 (716)
Q Consensus 564 ~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~~ 606 (716)
+++++++ |+++. |+. . ++| | | ++ |++++||+||||++|++|
T Consensus 311 ~~~~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~-g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~ 388 (510)
T 1ez0_A 311 QSLIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-E-SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVC 388 (510)
T ss_dssp HHHHHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-C-TTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEE
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-C-CCEecCEEEEecCCccccCHHHcCCccCCeEEEEEe
Confidence 9988765 23333 443 2 443 5 3 24 899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEccCH--HHHHHHHHcc--CcceEEEcCCcC---CCCCCcccC-cceeecccccccccc
Q 005047 607 DDVRAAIDHIHQHGSAHTDCIVAEDQ--KVAETFLCQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 678 (716)
Q Consensus 607 ~~~deAi~~aN~~~~GL~a~i~t~d~--~~a~~~~~~~--~~G~v~vN~~~~---~~~~~p~g~-g~~sG~~~~~~~~~g 678 (716)
+|+||||+++|+++|||++||||+|. ++++++++++ ++|+|+||++.. ..+..|||| +++||+|+. +++|
T Consensus 389 ~~~deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~--~~~G 466 (510)
T 1ez0_A 389 ENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAS--TSVG 466 (510)
T ss_dssp SSHHHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSC--CSSS
T ss_pred CCHHHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCC--CCcc
Confidence 99999999999999999999999987 7999999999 899999998754 346789998 688888742 3469
Q ss_pred ccchhcccEEEEEE
Q 005047 679 PVGVEGLLTTRWIL 692 (716)
Q Consensus 679 ~~gl~~ft~~k~v~ 692 (716)
++|+++|++.|++.
T Consensus 467 ~~gl~~~~~~k~~~ 480 (510)
T 1ez0_A 467 AEAIHRWLRPVAYQ 480 (510)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhheEEEEc
Confidence 99999999998764
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=8.4e-76 Score=666.95 Aligned_cols=402 Identities=15% Similarity=0.101 Sum_probs=337.9
Q ss_pred HHHHhcCCcce-eEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 267 l~~~~tg~~iG-T~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
+.+|.+|+.++ ++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 56788999998 888888 89999999999999999999999999999999999999999999999988775442
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc---ccccc----cccccCCCeEEEEeecceeEEEEEcCC-Cchh-
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDA- 416 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~~- 416 (716)
. ++. .|+...++.+++++...+. .+... +......+...+++++|+|||++|+|| ||..
T Consensus 118 ~----~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 A----RLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 1 221 2455555555555433221 11111 110011233467889999999999998 6864
Q ss_pred H--HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHH
Q 005047 417 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 492 (716)
Q Consensus 417 ~--~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~ 492 (716)
. .++++|||++||+||+|||+.||+|+.++++++.+++.++ ||+|+||+|+| +.++++.|..||+||+|+||||++
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 2 3899999999999999999999999999999999888889 99999999996 567888888899999999999999
Q ss_pred HHHHHHHhc---C--CCEEEecCCcceEEEcCCC---CHHHHHHHHHHhcCCCCC-ccccccceEEEeCc-cCChhhHHH
Q 005047 493 LVSQIKEST---K--IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKD-LACNGALNE 562 (716)
Q Consensus 493 ~g~~i~~~a---~--~~~~lElGGk~p~iV~~dA---Dl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~-i~dd~f~~~ 562 (716)
+||.|++.+ . ||+++|||||||+||++|| |+|.|++.+++++|.|+| +|+|+ +|+|||++ || |+|+++
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~~i~-d~f~~~ 343 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNP-GIAVVIEGADA-DRFTTA 343 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCC-CEEEEESSHHH-HHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccC-cEEEEecccHH-HHHHHH
Confidence 999999877 3 8999999999999999999 889999999999999987 99999 99999997 99 799999
Q ss_pred HHHHHHhc-------------------------CCEEe-cCccccccc--c-C-----CC---CccccccccCceEEEEE
Q 005047 563 LVVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEI 605 (716)
Q Consensus 563 l~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~ 605 (716)
|+++++++ |+++. |+.. .++| | | ++ |++++||+||||++|++
T Consensus 344 l~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~ 422 (528)
T 3v4c_A 344 AVEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVR 422 (528)
T ss_dssp HHHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEE
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEe
Confidence 99988764 33443 4433 3433 5 3 23 79999999999999999
Q ss_pred eCCHHHHHHHHHhcCCCceeEEEcc--CHHHHHHHHHccC--cceEEEcCCcC---CCCCCcccC-cceeeccccccccc
Q 005047 606 VDDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHAR 677 (716)
Q Consensus 606 ~~~~deAi~~aN~~~~GL~a~i~t~--d~~~a~~~~~~~~--~G~v~vN~~~~---~~~~~p~g~-g~~sG~~~~~~~~~ 677 (716)
|+|+||||+++|+++|||++||||+ |.+++++|+++++ +|+|+||+++. ..+.+|||| .+.||+| +.+.+
T Consensus 423 ~~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~g--r~~~~ 500 (528)
T 3v4c_A 423 VGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF--GATSV 500 (528)
T ss_dssp ESSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCT--TCCSS
T ss_pred cCCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCC--CCCCC
Confidence 9999999999999999999999999 8999999999998 99999999643 247789999 8888876 44456
Q ss_pred cccchhcccEEEEE
Q 005047 678 GPVGVEGLLTTRWI 691 (716)
Q Consensus 678 g~~gl~~ft~~k~v 691 (716)
|++|+++|++.|++
T Consensus 501 G~~gl~~~~~~k~~ 514 (528)
T 3v4c_A 501 GTMSIRRFLRPVAY 514 (528)
T ss_dssp SGGGGGGGEEEEEE
T ss_pred cHHHHHHhchhHHh
Confidence 99999999999974
No 46
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.4e-74 Score=646.44 Aligned_cols=392 Identities=16% Similarity=0.113 Sum_probs=332.6
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 347 (716)
.+|.+|+.++++..++ .+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 25 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 96 (490)
T 3ju8_A 25 LDPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPL-- 96 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3678999999999888 89999999999999999999999999999999999999999999999988775442
Q ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005047 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (716)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~A 424 (716)
.++. .|+..+++.+++++...+. .+...+. ..+...+++++|+|||++|+|| ||. ++++++++|
T Consensus 97 --~ea~--------~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (490)
T 3ju8_A 97 --WESA--------TEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPA 163 (490)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHH
Confidence 1221 3556666666665543321 2222211 1123456679999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHHHHhcC-
Q 005047 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 502 (716)
Q Consensus 425 LaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~- 502 (716)
|++||+||+|||+.||+|+.+|++++.+ + +|+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~ 239 (490)
T 3ju8_A 164 LLAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGG 239 (490)
T ss_dssp HHHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhc
Confidence 9999999999999999999999999987 7 999999999986678888889999999999999999999999874
Q ss_pred --CCE-EEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCcc-CChhhHHHHHHHHHhcCC-----
Q 005047 503 --IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDL-ACNGALNELVVELQHEGV----- 572 (716)
Q Consensus 503 --~~~-~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i-~dd~f~~~l~~~~~~~~~----- 572 (716)
+|+ +||||||||+||++|||+|.|++.+++|+|.|+| .|+|+ +|+|||+++ | |+|+++|+++++++.+
T Consensus 240 ~~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~ 317 (490)
T 3ju8_A 240 QPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCA-RRLLVPQGAWG-DALLARLVAVSATLRVGRFDE 317 (490)
T ss_dssp CTTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSE-EEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTC
T ss_pred cCCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCC-CEEEEECCccH-HHHHHHHHHHHHhccCCCCCC
Confidence 898 7999999999999999999999999999999987 99999 999999996 9 7999999999887632
Q ss_pred ------------------------------EE-ecCccc--ccc-c-c-C----CCCccccccccCceEEEEEeCCHHHH
Q 005047 573 ------------------------------GL-FGGPRA--SKL-L-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAA 612 (716)
Q Consensus 573 ------------------------------~~-~g~~~~--~~~-~-p-v----~~~~~~~eE~FGPVl~v~~~~~~deA 612 (716)
++ .|+.+. .++ + | | ++|++++||+||||++|++|+|+|||
T Consensus 318 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eA 397 (490)
T 3ju8_A 318 QPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAA 397 (490)
T ss_dssp SSCCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHH
T ss_pred CCcCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHH
Confidence 11 122211 122 2 5 2 46899999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC-CCCCcccCcceeeccccccccccccchhcccEEEEE
Q 005047 613 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 691 (716)
Q Consensus 613 i~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~-~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v 691 (716)
|+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+..||||.+.||+ .++++|++.|+|
T Consensus 398 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~----------~~~~~~~~~k~v 467 (490)
T 3ju8_A 398 IREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGN----------HRPSAYYAADYC 467 (490)
T ss_dssp HHHHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBS----------SCCEETTHHHHH
T ss_pred HHHHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccch----------hHHHhhheeEEE
Confidence 9999999999999999999999999999999999999997653 46789998777653 478999999999
Q ss_pred EEcCc
Q 005047 692 LRGNG 696 (716)
Q Consensus 692 ~~~~~ 696 (716)
++...
T Consensus 468 ~~~~~ 472 (490)
T 3ju8_A 468 AYPVA 472 (490)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 88654
No 47
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=1.7e-73 Score=648.26 Aligned_cols=399 Identities=16% Similarity=0.172 Sum_probs=331.8
Q ss_pred HHHhc-CCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Q 005047 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 345 (716)
Q Consensus 268 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~-~~el~~~~~~d~~~~~ 345 (716)
.+|.+ ++.++++..++ .+||++|+++|++||+.|++++.++|.++|++++++|+++ +++|++++.+|+++..
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~ 155 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTV 155 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCH
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCH
Confidence 45676 67889988888 8999999999999999999999999999999999999999 9999998887665432
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~ 422 (716)
.++..+ ++...++.+++++...+. .+..... .+.+...+.++.|+|||++|+|| ||. +..++++
T Consensus 156 ----~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 156 ----IQAEID-------AAAELIDFFRFNAKFAVELEGEQPIS--VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ----HHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCCC--CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ----HHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCccC--CCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 222211 244555566655543321 1211110 11234456778889999999998 685 4679999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHh
Q 005047 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (716)
Q Consensus 423 ~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 500 (716)
||| +||+||+|||+.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+|++|+||||+++|+.|+++
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 59999999999999999999999987 8 99999999996 56788999999999999999999999999987
Q ss_pred c---CC------CEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc
Q 005047 501 T---KI------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE 570 (716)
Q Consensus 501 a---~~------~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~ 570 (716)
+ .+ |+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|+ +|+|||+++| |+|+++|+++++++
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~-~rv~V~~si~-d~f~~~l~~~~~~l 375 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSAC-SRLYVPKSLW-PQIKGRLLEEHSRI 375 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEGGGH-HHHHHHHHHHHHTC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCC-cEEEEecchH-HHHHHHHHHHHHhc
Confidence 7 25 499999999999999999999999999999999987 99999 9999999999 79999999999875
Q ss_pred CC------------------------------------EE-ecCccc--cccc--c-C-----CCCccccccccCceEEE
Q 005047 571 GV------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTV 603 (716)
Q Consensus 571 ~~------------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v 603 (716)
.+ ++ .||... .++| | | ++|++++||+||||++|
T Consensus 376 ~vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V 455 (563)
T 4e3x_A 376 KVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTV 455 (563)
T ss_dssp CBSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEE
T ss_pred cCCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEE
Confidence 31 11 132211 2333 5 2 46899999999999999
Q ss_pred EEeCC--HHHHHHHH-HhcCCCceeEEEccCHHHHHHHHHccC--cceEEEcCCcCC--CCCCcccCcceeecccccccc
Q 005047 604 EIVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD--SAAVFHNASTRF--CDGARFGLGAEVGISTSRIHA 676 (716)
Q Consensus 604 ~~~~~--~deAi~~a-N~~~~GL~a~i~t~d~~~a~~~~~~~~--~G~v~vN~~~~~--~~~~p~g~g~~sG~~~~~~~~ 676 (716)
++|+| +||||+++ |+++|||++||||+|.+++++++++++ +|+||||+.+.. .+.+||||.+.||++. ++
T Consensus 456 ~~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~---~~ 532 (563)
T 4e3x_A 456 YVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTND---KP 532 (563)
T ss_dssp EEECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCC---CT
T ss_pred EEECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCC---cc
Confidence 99996 79999999 799999999999999999999999965 999999986543 4678999999998752 46
Q ss_pred ccccchhcccEEEEEEEcC
Q 005047 677 RGPVGVEGLLTTRWILRGN 695 (716)
Q Consensus 677 ~g~~gl~~ft~~k~v~~~~ 695 (716)
+|++++++|++.|+|....
T Consensus 533 ~G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 533 GGPHYILRWTSPQVIKETH 551 (563)
T ss_dssp TSTTGGGGGBCCEEEEEEC
T ss_pred CCHHHHHHhCceEEEEEeC
Confidence 7999999999999998754
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=7.2e-73 Score=676.13 Aligned_cols=401 Identities=17% Similarity=0.176 Sum_probs=345.4
Q ss_pred HHHHhc-CCcceeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 005047 267 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (716)
Q Consensus 267 l~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 345 (716)
+.+|.+ ++.+|++..++ .+++++|+++|++||+.|+++|.++|+++|++++++|++|+++|++++++|.+++.
T Consensus 549 v~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~ 622 (1026)
T 4f9i_A 549 TVNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQW 622 (1026)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EeCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 366776 77889998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred HhchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005047 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (716)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~ 422 (716)
.++ ..|+..+++.+++++...+.. +...+. ...+...++.++|+|||++|+|| ||. +.+++++
T Consensus 623 ----~ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~--~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a 688 (1026)
T 4f9i_A 623 ----DQA--------YADVTEAIDFLEYYAREMIRLGQPQRVG--HAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMAS 688 (1026)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHTSCEEEC--CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHH
T ss_pred ----hhH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc--CCCCccceeEeecCceEEEeCCCccHHHHHHHHHH
Confidence 122 236777888888887654332 221111 12356678899999999999998 685 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHh
Q 005047 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (716)
Q Consensus 423 ~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 500 (716)
+||++||+||+|||+.||+|+.++++++++ + +|+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 689 ~ALaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~ 764 (1026)
T 4f9i_A 689 AAIVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIER 764 (1026)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999997 7 99999999997 66788888899999999999999999999987
Q ss_pred cC---------CCEEEecCCcceEEEcCCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhc
Q 005047 501 TK---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHE 570 (716)
Q Consensus 501 a~---------~~~~lElGGk~p~iV~~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~ 570 (716)
++ ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|+ +|+|||++|| |+|+++|+++++++
T Consensus 765 aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~-~rl~V~~~i~-d~f~~~L~~~~~~l 842 (1026)
T 4f9i_A 765 AAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSAC-SRVIVLDAVY-DKFIERLVSMAKAT 842 (1026)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEGGGH-HHHHHHHHHHHHHC
T ss_pred hhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCC-ceEEecHHHH-HHHHHHHHHHHHhc
Confidence 64 7999999999999999999999999999999999987 99999 9999999999 79999999999876
Q ss_pred CC---------------------------------E-EecCccc--cccc--c-C-----CCCccccccccCceEEEEEe
Q 005047 571 GV---------------------------------G-LFGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 606 (716)
Q Consensus 571 ~~---------------------------------~-~~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 606 (716)
.+ + +.|+... .++| | | +++++++||+||||++|++|
T Consensus 843 ~vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~ 922 (1026)
T 4f9i_A 843 KVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRA 922 (1026)
T ss_dssp CBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEE
T ss_pred ccCCcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEe
Confidence 32 1 1233221 1333 5 2 46899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccCcceEEEcCCcCC--CCCCcccCcceeeccccccccccccchhc
Q 005047 607 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEG 684 (716)
Q Consensus 607 ~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~~G~v~vN~~~~~--~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ 684 (716)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.+.. .+..||||.+.||+|. +++|++++++
T Consensus 923 ~d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~~l~~ 999 (1026)
T 4f9i_A 923 KDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGT---KAGGPDYLLH 999 (1026)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSC---CBTSTTTGGG
T ss_pred CCHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCC---CcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999997643 3678999999998752 3579999999
Q ss_pred ccEEEEEEEcCc
Q 005047 685 LLTTRWILRGNG 696 (716)
Q Consensus 685 ft~~k~v~~~~~ 696 (716)
|++.|+|.++..
T Consensus 1000 f~~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1000 FMDPRVVTENTM 1011 (1026)
T ss_dssp GEEEEEEEEECC
T ss_pred hceEEEEEEecc
Confidence 999999998765
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=2.2e-71 Score=631.58 Aligned_cols=395 Identities=16% Similarity=0.143 Sum_probs=323.8
Q ss_pred HHHhcCCcceeEEecCCccccchhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 005047 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (716)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a-~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 346 (716)
.+|.+|+.++++... .+|+++|+++|++| |+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~nP~tg~~i~~~~~~-------~~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (534)
T 2y53_A 27 TDPVTGVALVRVSSE-------GLDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTR- 98 (534)
T ss_dssp ECTTTCCEEEEECCT-------TCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 567889988887653 35899999999999 599999999999999999999999999999999988775442
Q ss_pred hchhHHHHHHhhcCHHHHHHHHHHHHHHhcccccc--------cccccccccCCCeEEEEeecce-eEEEEEcCC-Cch-
Q 005047 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI--------GQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD- 415 (716)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~Pl-GVv~~I~p~-~P~- 415 (716)
.++. .|+...++.+++++...+.. ++..+. ..+.....+.+++|+ |||++|+|| ||.
T Consensus 99 ---~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~ 166 (534)
T 2y53_A 99 ---NDSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESL-SKDRSFSAQHVLSPTRGVALFINAFNFPSW 166 (534)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEEC-STTSSEEEEEEEEECSSCEEEECCTTCTTH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccC-CCCCcccceEEEecCCCEEEEECCCchHHH
Confidence 2222 24555666666665432211 221111 011223467889997 999999998 685
Q ss_pred hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHH
Q 005047 416 ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKL 493 (716)
Q Consensus 416 ~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~ 493 (716)
+++++++|||++||+||+|||+.||+|+.+|++++.++ . ||+|+||+|+| +.++++.| +++|+|+||||+++
T Consensus 167 ~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~~ 240 (534)
T 2y53_A 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSADT 240 (534)
T ss_dssp HHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHHH
Confidence 67899999999999999999999999999999999872 3 69999999996 33333333 57999999999999
Q ss_pred HHHHHHhc-----CCCEEEecCCcceEEEcCCC-----CHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHH
Q 005047 494 VSQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNE 562 (716)
Q Consensus 494 g~~i~~~a-----~~~~~lElGGk~p~iV~~dA-----Dl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~ 562 (716)
||.|++.+ .||++||||||||+||++|| |||.|++.+++|+|.|+| +|+|+ +|+|||++|| |+|+++
T Consensus 241 G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~-~rvlV~~~i~-d~f~~~ 318 (534)
T 2y53_A 241 AATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAI-RRAFVPEAAL-EPVLEA 318 (534)
T ss_dssp HHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSE-EEEEEEGGGH-HHHHHH
T ss_pred HHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCC-CEEEEeccHH-HHHHHH
Confidence 99999764 59999999999999999999 999999999999999987 99999 9999999999 799999
Q ss_pred HHHHHHhcCC---------------------------------EE-ecCcc--------ccccc--c-C-----CC--Cc
Q 005047 563 LVVELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I-----PE--TR 590 (716)
Q Consensus 563 l~~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-v-----~~--~~ 590 (716)
|+++++++.+ ++ .||.. ..++| | | ++ |+
T Consensus 319 l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~ 398 (534)
T 2y53_A 319 LKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATL 398 (534)
T ss_dssp HHHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSS
T ss_pred HHHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCH
Confidence 9999887532 33 35432 12343 5 3 23 58
Q ss_pred cccccccCceEEEEEeC---CH-----HHHHHHHHhcCCCceeEEEccCHHHHHHHHHcc--CcceEEEcCCcC------
Q 005047 591 LFHHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV--DSAAVFHNASTR------ 654 (716)
Q Consensus 591 ~~~eE~FGPVl~v~~~~---~~-----deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~--~~G~v~vN~~~~------ 654 (716)
+++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+|+||+++.
T Consensus 399 i~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~ 478 (534)
T 2y53_A 399 LHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTG 478 (534)
T ss_dssp TTTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCC
T ss_pred HHhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCcccccccc
Confidence 99999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred ---CCCCCcccCcceeecccccccc-ccccchhcccEEEEEEEc
Q 005047 655 ---FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILRG 694 (716)
Q Consensus 655 ---~~~~~p~g~g~~sG~~~~~~~~-~g~~gl~~ft~~k~v~~~ 694 (716)
..+.+||||.++||+| ++ +|++|+++|++.|+|...
T Consensus 479 ~~~~~~~~pfGG~k~SG~G----r~~~g~~~l~~~~~~k~v~~~ 518 (534)
T 2y53_A 479 HGNVMPMSLHGGPGRAGGG----EELGGLRALAFYHRRSAIQAA 518 (534)
T ss_dssp SSCCCTTSEECCSGGGCSC----CEESGGGGGGGGEEEEEEEEE
T ss_pred cCCCCCCCCCCCcccCCCC----CCcchHHHHHHHhhhheeecC
Confidence 2467899999999886 34 589999999999998763
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=2.2e-71 Score=662.04 Aligned_cols=384 Identities=17% Similarity=0.154 Sum_probs=329.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHHH
Q 005047 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (716)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (716)
.+++++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|.|++. .++ ..|+..+++
T Consensus 549 ~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai~ 616 (1001)
T 3haz_A 549 PDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAAD 616 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999887665432 122 347888888
Q ss_pred HHHHHhccccc-ccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005047 370 SIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 446 (716)
Q Consensus 370 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l 446 (716)
.+++|+...+. .+...... .+.+...+++++|+|||++|+|| ||. ++++++++||++||+||+||||.||+|+..+
T Consensus 617 ~lr~~a~~a~~~~g~~~~~~-~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l 695 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSETAMP-GPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREA 695 (1001)
T ss_dssp HHHHHHHHHHHHHSSCEECC-CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCcccccc-CCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHH
Confidence 99988865543 23221111 12456788899999999999998 685 6789999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhc------CCCEEEecCCcceEEEc
Q 005047 447 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYVD 518 (716)
Q Consensus 447 ~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a------~~~~~lElGGk~p~iV~ 518 (716)
++++.+ + +|+|+||+|+| +++ ++.|..||+||+|+||||+++|+.|++.+ .+|+++|||||||+||+
T Consensus 696 ~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~ 770 (1001)
T 3haz_A 696 VALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIAD 770 (1001)
T ss_dssp HHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEEC
T ss_pred HHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEc
Confidence 999987 7 99999999997 455 88888999999999999999999998764 38999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHHhcCCE------------------------
Q 005047 519 KSANLDVAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQHEGVG------------------------ 573 (716)
Q Consensus 519 ~dADl~~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~------------------------ 573 (716)
+|||+|.|++.+++|+|.|+| +|+|+ +|+|||++|| |+|+++|+++++++.+.
T Consensus 771 ~dADld~Aa~~iv~s~f~naGQ~C~A~-~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~ 848 (1001)
T 3haz_A 771 ATALPEQVADDVVTSAFRSAGQRCSAL-RLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAH 848 (1001)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCE-EEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCC-ceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHH
Confidence 999999999999999999987 99999 9999999999 79999999999876321
Q ss_pred ---------EecCccc-cccc--c-C---CCCccccccccCceEEEEEeCC--HHHHHHHHHhcCCCceeEEEccCHHHH
Q 005047 574 ---------LFGGPRA-SKLL--Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVA 635 (716)
Q Consensus 574 ---------~~g~~~~-~~~~--p-v---~~~~~~~eE~FGPVl~v~~~~~--~deAi~~aN~~~~GL~a~i~t~d~~~a 635 (716)
+.|++.. .++| | | +++++++||+||||++|++|++ +||||+++|+++|||++||||+|.+++
T Consensus 849 i~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a 928 (1001)
T 3haz_A 849 IARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSI 928 (1001)
T ss_dssp HHHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHH
T ss_pred HHHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHH
Confidence 1111111 1233 5 3 4678999999999999999996 899999999999999999999999999
Q ss_pred HHHHHccCcceEEEcCCcCC--CCCCcccCcceeeccccccccccccchhcccEEEEEEEcCc
Q 005047 636 ETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 696 (716)
Q Consensus 636 ~~~~~~~~~G~v~vN~~~~~--~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~ 696 (716)
+++++++++|+||||+++.. .+..||||.+.||+|. +++|++|+++|++.|+|+++..
T Consensus 929 ~~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 929 EAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGP---KAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCC---CBTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCC---CCCCHHHHHHhceeeEEEECCc
Confidence 99999999999999997654 3567999999998862 3579999999999999998764
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-69 Score=603.44 Aligned_cols=383 Identities=18% Similarity=0.236 Sum_probs=311.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHHH
Q 005047 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (716)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (716)
.+++++++++|++||+.|++++.++|.++|++++++|++|+++|++++.+|++++. .++.. .+....++
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI----WQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCH----HHHHH-------HHHHHHHH
Confidence 67999999999999999999999999999999999999999999999887765432 22221 12344555
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC-Cchh-HHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005047 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPDA-LVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (716)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~~-~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~ 447 (716)
.+.++....+..|.... ..+...+++++|+|||++|+|| ||.. +++++++||++||+||+|||+.||+|+.+++
T Consensus 80 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 55555443333333211 2345578889999999999998 7964 5799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecC-CcceEEEcCCCCHH
Q 005047 448 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 524 (716)
Q Consensus 448 ~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~~~~lElG-Gk~p~iV~~dADl~ 524 (716)
+++.+++.++ +|+|++|+|++ +.++++.|..||+||+|+||||+.+.+..+ ...||+ +|+| ||+|+||++||||+
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9998888899 99999999996 567777888899999999999999877653 346999 7777 99999999999999
Q ss_pred HHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHHHH-------hc--C-------CEEecC---ccc----
Q 005047 525 VAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVELQ-------HE--G-------VGLFGG---PRA---- 580 (716)
Q Consensus 525 ~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~~~-------~~--~-------~~~~g~---~~~---- 580 (716)
.|++.+++|+|+|+| +|+|+ +|+|||++|| |+|+++|+++.. +. | ..+ |. .+.
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~-~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-gp~i~~~~~~~i 310 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASE-QSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSM-NPAIVGKSVQHI 310 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSC-CEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCB-CGGGTTCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCC-cEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhhcccccCCCCcc-CcccCHHHHHHH
Confidence 999999999999987 99999 9999999999 799999987641 11 0 000 00 000
Q ss_pred cccc----c------------C-CCCccccccccCceEEEEEeCCHHHHH----HHHHhcCCCceeEEEccCHHHHHHHH
Q 005047 581 SKLL----Q------------I-PETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFL 639 (716)
Q Consensus 581 ~~~~----p------------v-~~~~~~~eE~FGPVl~v~~~~~~deAi----~~aN~~~~GL~a~i~t~d~~~a~~~~ 639 (716)
..++ + + ++++ ++||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|+
T Consensus 311 ~~~~~~a~~~ga~vl~gg~~~v~~~~~-~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~ 389 (464)
T 3k9d_A 311 ANLAGLTVPADARVLIAEETKVGAKIP-YSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFA 389 (464)
T ss_dssp HHHTTCCCCTTCCEEEEECCCCSTTCG-GGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHH
T ss_pred HHHhhhhhcCCCEEEEcCCCCCCCCCc-ccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 0000 1 1 2344 5699999999999999999997 79999999999999999999999999
Q ss_pred HccCcceEEEcCCcC---------CCCCCcccCcceeeccccccccccccchhcccEEEEEEEcCcee
Q 005047 640 CQVDSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 698 (716)
Q Consensus 640 ~~~~~G~v~vN~~~~---------~~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~~~~ 698 (716)
+++++|+|+||+++. ..+.+|||+|.+ |.+ ..+|..|+++|++.|+|.++..+.
T Consensus 390 ~~l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~-G~g----~~~~~~~~~~~~~~k~v~~~~~~~ 452 (464)
T 3k9d_A 390 LKKPVSRLLVNTPGALGGIGATTNLVPALTLGCGAV-GGS----SSSDNIGPENLFNIRRIATGVLEL 452 (464)
T ss_dssp HHSSEEEEEESSCHHHHHTTSSSSSCCCSCBBCTGG-GTC----SCCSBCCGGGSEEEEEEEECCCCH
T ss_pred HhCCEeEEEEECCccccccccCCCCCccccccCcCC-CCC----cCCCCCCHHHheEEEEEEecCCch
Confidence 999999999999875 457889998664 433 245889999999999999987653
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=9.5e-67 Score=582.24 Aligned_cols=381 Identities=17% Similarity=0.225 Sum_probs=295.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhHHHHHHhhcCHHHHHHHHH
Q 005047 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (716)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (716)
.+|+++++++|++||+.|+++|+++|.++|++++++|++|+++|++++.+|.+++. .++.. .++...++
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~----~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGI----VEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHH-------HHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887765432 22221 13445555
Q ss_pred HH-HHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005047 370 SI-RILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 446 (716)
Q Consensus 370 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~-~P~-~~~~~~~~ALaaGNtvv~Kps~~tp~t~~~l 446 (716)
.+ ++++. .+..|.... +.+...+.+++|+|||++|+|| ||. ..++++++||++||+||+|||+.||+|+..+
T Consensus 75 ~~~~~~~~-~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~ 149 (452)
T 3my7_A 75 FIYNKYKD-EQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDA 149 (452)
T ss_dssp HHHHHHTT-CCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred HHHHHhhh-ccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHH
Confidence 55 33332 222332211 1233457889999999999998 796 4679999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-CchHHHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCCcceEEEcCCCCHH
Q 005047 447 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLD 524 (716)
Q Consensus 447 ~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~ 524 (716)
++++.+++.++ +|+|++|+|++ +.++++.|..||+||+|+||||+.+++..+ ...||+++|||||+|+||++|||++
T Consensus 150 ~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~ 228 (452)
T 3my7_A 150 AKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIK 228 (452)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHH
T ss_pred HHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHH
Confidence 99999988889 99999999996 667888888899999999999999988653 3579999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-ccccccceEEEeCccCChhhHHHHHHH------------HHhc-------CCEEecCccc----
Q 005047 525 VAKNIVIDAKIDYPA-ACNAMVETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA---- 580 (716)
Q Consensus 525 ~Aa~~iv~~~f~n~g-~C~a~~~rv~V~~~i~dd~f~~~l~~~------------~~~~-------~~~~~g~~~~---- 580 (716)
.|++.+++|+|+|+| +|+|. +|+|||++|| |+|+++|+++ ++++ +..++|+...
T Consensus 229 ~Aa~~iv~s~~~~~GQ~C~a~-~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~ 306 (452)
T 3my7_A 229 RAVASVLMSKTFDNGVVCASE-QAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAE 306 (452)
T ss_dssp HHHHHHHHGGGGGGGCCTTCE-EEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccCCC-cEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHH
Confidence 999999999999987 99999 9999999999 7999998763 2111 1223343321
Q ss_pred -ccc-c-c-C------------CCCccccccccCceEEEEEeCCHHHHHHHHHhcC----CCceeEEEccCHHHHHH---
Q 005047 581 -SKL-L-Q-I------------PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET--- 637 (716)
Q Consensus 581 -~~~-~-p-v------------~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~----~GL~a~i~t~d~~~a~~--- 637 (716)
.++ + | + ++++++ +|+||||++|++|+|+||||+++|++. |||+++|||+|.+++++
T Consensus 307 ~~G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~ 385 (452)
T 3my7_A 307 MAGVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRY 385 (452)
T ss_dssp HHTCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHH
T ss_pred hCCceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHH
Confidence 122 2 2 2 235555 589999999999999999999999985 99999999999888777
Q ss_pred HHHccCcceEEEcCCcCCC-----------CCCcccCcceeeccccccccccccchhcccEEEEEEEcC
Q 005047 638 FLCQVDSAAVFHNASTRFC-----------DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 695 (716)
Q Consensus 638 ~~~~~~~G~v~vN~~~~~~-----------~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~~~~ 695 (716)
|++++++|+|+||+++.+. +.+++|.|.+.|.+. .+..+.++|.++|+|..+.
T Consensus 386 ~a~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~-----~~nv~~~~l~n~~~v~~~~ 449 (452)
T 3my7_A 386 FGDKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSI-----SENVGPKHLINKKTVAKRA 449 (452)
T ss_dssp HHHHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC
T ss_pred HHHhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCcc-----CCCCChhHeeeeeEEEeec
Confidence 9999999999999987552 224456666655543 3678899999999997653
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=1.7e-38 Score=342.57 Aligned_cols=254 Identities=39% Similarity=0.565 Sum_probs=185.9
Q ss_pred cccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchh
Q 005047 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (716)
Q Consensus 12 ~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (716)
++.+++|||||||+++++++.++.+.+.+++++|+.+++.|+++||||||+.+.|+..++.. ..+..+. .
T Consensus 2 ~~~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~----~~~~~l~------~ 71 (367)
T 2j5v_A 2 SDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYP----ELPATIA------S 71 (367)
T ss_dssp -CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSC----CCCSSHH------H
T ss_pred CCCCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCC----CCCCCHH------H
Confidence 46789999999999998777789999999999999999999999999999998887654422 1222222 2
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCc
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 171 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~ 171 (716)
.+++.++||..++.+|...|..+|+++.|+.++.+||.+...+.+..+.++.+|+.|+|||+++||.+.. ++.
T Consensus 72 ~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~-------~el 144 (367)
T 2j5v_A 72 KQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVAT-------AEI 144 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCC-------GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceec-------ccc
Confidence 3467799999999999999999999999998888888876656555589999999999999999887765 233
Q ss_pred eeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccch--hchHHHHhcCCCCCcccCCcHHHHHHHHH
Q 005047 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIR--AKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (716)
Q Consensus 172 ~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~--~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (716)
.++|+|++|+++|.+|+||+|+|+|||||||++|| ++|++++|+++++ +|+.++... +.+.+++|||.+|+++|..
T Consensus 145 ~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~-~~s~~gtGgM~~Kl~Aa~~ 223 (367)
T 2j5v_A 145 KVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGD-SVSGLGTGGMSTKLQAADV 223 (367)
T ss_dssp CCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------------------------CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhc-cCCCcCcCccHHHHHHHHH
Confidence 45999999999999999999999999999999999 5999999999999 888775442 2345899999999999999
Q ss_pred HHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 249 a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
|+++|++++|+|++.|+.|.++++|+..||++.+.
T Consensus 224 a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 224 ACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp HHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred HHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999876
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=6.6e-37 Score=315.79 Aligned_cols=245 Identities=31% Similarity=0.522 Sum_probs=200.2
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchhHHH
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (716)
|++|||||||+++ +++.++.+.+.+++++|+.+++. +++|||||||.+.+...++ .+. .. .-.+++
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g----~~~--~~------~~~~~~ 67 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLD----IDR--KN------LINKQV 67 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCC----CCS--SS------HHHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhC----Ccc--CC------chHHHH
Confidence 7899999999999 55567888999999999999888 8999999998776543332 211 01 112468
Q ss_pred HHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCceee
Q 005047 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFW 174 (716)
Q Consensus 95 ~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~~~ 174 (716)
+.++++..++.++...|..+|+++.++.++..+|.+..++.+..+.|+.+|+.|+|||++++|.+.. .+..++
T Consensus 68 l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~-------~~~~~~ 140 (251)
T 2ako_A 68 LAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAI-------EEIVFG 140 (251)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCC-------HHHHBT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceee-------cceeec
Confidence 8999998998889999999999988888888788655444444489999999999999998775543 122359
Q ss_pred cchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchh--chHHHHhcCCCCCcccCCcHHHHHHHHHHHH
Q 005047 175 DNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRA--KHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 251 (716)
Q Consensus 175 ~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~--e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~ 251 (716)
|+|++|+++|.+|+||+|+|+|||||||++|| ++|++++|++|+++ |+.+++. ++.+.+++|||.+|+++|..|++
T Consensus 141 ~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~-~~~~~~~~ggm~~k~~aa~~a~~ 219 (251)
T 2ako_A 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI-KTGSEHGTGGIVTKLKAAKFLLE 219 (251)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhc-ccCCCCccCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 48999999999998 8877643 22245899999999999999999
Q ss_pred cCCcEEEeeCCCcchHHH--HhcCCcceeEEe
Q 005047 252 AGIPVVITSGFAMDSIIK--VLEGKRVGTLFH 281 (716)
Q Consensus 252 ~gi~v~I~~g~~~~~l~~--~~tg~~iGT~i~ 281 (716)
+|++++|+||+.|+++.+ +++|+..||++.
T Consensus 220 ~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 220 HNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp TTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred CCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence 999999999999999998 999988999873
No 55
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.1e-33 Score=293.61 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=173.2
Q ss_pred cCeEEEEeCCcccccCCC--c-ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccc---ccc
Q 005047 14 VKRLVVKVGTAVVTRSDG--R-LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQ---KPQ 87 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~--~-~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~---~~~ 87 (716)
+|++|||+||++|++++. . ++.+.+.+++++|+.++ +.++|||||||+++...+ ++ .+.++.|..-. ...
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~-~~-~gi~~~~~~~~g~~~~~ 77 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFA-GE-YRIGSEIENEEDLRRRR 77 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHH-HH-HTTTSCCCSHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHH-HH-cCCCcccccCccccccc
Confidence 589999999999998763 4 88889999999999885 579999999999766543 32 34444443100 000
Q ss_pred cchhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchh-hHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCC
Q 005047 88 NELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDED-FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 166 (716)
Q Consensus 88 ~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~ 166 (716)
+.+..... +. ..+...+...|..+|+++.++.-.+..+...+ ....+.+.++.+|+.|+|||++| |.....
T Consensus 78 ~G~rvT~~-~~--~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~-~~~~~~---- 149 (269)
T 3ll9_A 78 FGFALTQN-WV--KKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYG-DVVLDS---- 149 (269)
T ss_dssp HHHHHHHH-HH--HHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEEC-EEEEBS----
T ss_pred chhhHHHH-HH--HHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECC-CEEecc----
Confidence 11100000 11 12334466888888888765422211110001 11234678999999999999996 544431
Q ss_pred CCC--Ccee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHH
Q 005047 167 EDS--SGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAK 242 (716)
Q Consensus 167 ~~~--g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~K 242 (716)
+ ++.+ +|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+++++. ++.+.+++|||.+|
T Consensus 150 --~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~-~~~~~~~tgGM~~K 226 (269)
T 3ll9_A 150 --DRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-GTLNTDVTGGMVGK 226 (269)
T ss_dssp --CTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHH
T ss_pred --cccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhc-ccCCCcCcCCcHHH
Confidence 3 4444 999999999999999999999999999999999 489999999999999976553 22346899999999
Q ss_pred HHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcc-eeEEe
Q 005047 243 VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 281 (716)
Q Consensus 243 l~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~i-GT~i~ 281 (716)
+++|..++++|++++|+||+.|+++.++++|+.+ ||++.
T Consensus 227 l~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 227 IRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 9999999999999999999999999999999998 99876
No 56
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=1.2e-33 Score=296.03 Aligned_cols=248 Identities=16% Similarity=0.184 Sum_probs=185.9
Q ss_pred cCeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhcccCCcccccccccch
Q 005047 14 VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 90 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~--~~~~~~~~~~~a~~I~~l~~~G~-~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l 90 (716)
.+++||||||+++++++ +.++.+.+.+++++|+.+++.|+ ++|||||||+++...+ ... +.+..+.
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l-~~~-~~~~~~~--------- 91 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAI-RDH-DSTHAFS--------- 91 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCT---------
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHc-CCCcccc---------
Confidence 35899999999999864 36888899999999999999998 6999999988766543 221 2221111
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCC
Q 005047 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g 170 (716)
+...++|+..++..+...|..+|+++.++...+.+|...+.+.++.+.|+.+|+.|.|||++| |.+... ++
T Consensus 92 --~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~g-d~~~~~------~g 162 (286)
T 3d40_A 92 --LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAG-DALFDE------HG 162 (286)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEEC-EEEEBT------TS
T ss_pred --hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcC-CeEEcC------CC
Confidence 145677777788889999999999887775544333100122344578999999999999997 555441 33
Q ss_pred ce-eecchHHHHHHHhh-cCCCEEEEeecCCccccCCCcccccccccccchhchHHHHh--cCCCCCcccCCcHHHHHHH
Q 005047 171 GI-FWDNDSLAGLLALE-LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGGMTAKVNAA 246 (716)
Q Consensus 171 ~~-~~~sD~~A~~lA~~-L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~--~g~~~~~~~ggM~~Kl~aa 246 (716)
.. ++|+|++|+++|.+ |+||+|+|+|||||||++||+ ++++|++|++.|+++++. .++.+.+++|||.+|+++|
T Consensus 163 ~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa 240 (286)
T 3d40_A 163 KLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDAL 240 (286)
T ss_dssp CEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHH
T ss_pred CEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHH
Confidence 33 49999999999999 999999999999999999997 799999999998776543 1223458899999999999
Q ss_pred HHHHHcCCcEEEeeCCCcchHHHHhcC-----Ccc-eeEEecC
Q 005047 247 YCAACAGIPVVITSGFAMDSIIKVLEG-----KRV-GTLFHRD 283 (716)
Q Consensus 247 ~~a~~~gi~v~I~~g~~~~~l~~~~tg-----~~i-GT~i~~~ 283 (716)
..|+++|++|+|+||+.|+++.+++++ +.. ||.|..+
T Consensus 241 ~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 241 VTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 999999999999999999999999998 665 9999765
No 57
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=8.6e-33 Score=291.97 Aligned_cols=243 Identities=19% Similarity=0.232 Sum_probs=184.2
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccccchhH
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDG 92 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (716)
++++||||||+++++++ .+..++++|+.+++.|+++|||||||++++..+.. .+....+.+ ++.+... ..
T Consensus 25 ~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~--~~~~~~~~~g~R~t~~~-~l 95 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRR--LGIEGDFKGGFRVTTPE-VL 95 (299)
T ss_dssp TCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHH--HTCCCCCSSSSCCBCHH-HH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH--cCCcccccCCcccCCHH-HH
Confidence 57899999999998743 57899999999999999999999999999876533 233333322 2222110 11
Q ss_pred HHHHH--hchHHHHHHHHHHhccCCCccceEEecC------c-----------cCCchhh-HhHHHHHHHHHHhCCCeEE
Q 005047 93 KACAA--VGQSSLMALYDTLFSQLDVTSSQLLVTD------S-----------DFRDEDF-RKQLYDTVQSLLDLRVIPI 152 (716)
Q Consensus 93 ~~~~a--~g~~~~~~~~~~~l~~~gi~~~~~~~~~------~-----------~~~~~~~-~~~~~~~i~~ll~~g~iPV 152 (716)
+.+.+ .|+ +...+...|...|+++..+...+ . |++..+. ..++.+.|+.+|+.|.|||
T Consensus 96 ~~~~~~~~G~--l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpV 173 (299)
T 2ap9_A 96 DVARMVLFGQ--VGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPV 173 (299)
T ss_dssp HHHHHHHHHT--HHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhH--HHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEE
Confidence 23333 444 44457788988887754321111 0 0110111 1145789999999999999
Q ss_pred eeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCC
Q 005047 153 FNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDK 231 (716)
Q Consensus 153 ~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~ 231 (716)
+++ +.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++.
T Consensus 174 v~~---v~~-----~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~---- 239 (299)
T 2ap9_A 174 VST---LAP-----DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP---- 239 (299)
T ss_dssp EES---EEE-----CTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG----
T ss_pred ECC---eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH----
Confidence 986 221 1245566 7999999999999999999999999999999996 468999999999988754
Q ss_pred CCcccCCcHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 232 SRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 232 ~~~~~ggM~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
+++|||.||+++|..|+++|++ |+|+||+.|+++ .++++++..||++.++
T Consensus 240 --~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 240 --TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp --GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred --hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 6799999999999999999999 999999999997 8999999999999876
No 58
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=7.8e-33 Score=292.00 Aligned_cols=245 Identities=24% Similarity=0.336 Sum_probs=185.2
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc-cchh
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~-~~l~ 91 (716)
+|++|||||||++++++ .+.+++++|+.+++.|+++|||||||++++..+.. .+...++.+ ++.+. ..+.
T Consensus 36 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~--~~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQ--LNIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp TCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 67999999999998743 57899999999999999999999999999876532 223322222 22211 1121
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccc-------eEEecCc-----cCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCc
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDA 158 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~-------~~~~~~~-----~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~ 158 (716)
...+.+.|+... .+...|..+|+++. +++.+.. |++..+. ...+.+.|+.+|++|.|||+++
T Consensus 108 ~~~~~~~G~~n~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~--- 182 (298)
T 2rd5_A 108 IVSMVLVGKVNK--NLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIAS--- 182 (298)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEES---
T ss_pred HHHHHHhchHHH--HHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcC---
Confidence 112233566543 45678888887643 3333321 3322111 1234788999999999999985
Q ss_pred eecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccC
Q 005047 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (716)
Q Consensus 159 v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~g 237 (716)
+.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.+++..+ +++|
T Consensus 183 v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~g 251 (298)
T 2rd5_A 183 VAA-----DDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAG 251 (298)
T ss_dssp EEE-----CTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCT
T ss_pred eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCC
Confidence 222 1245567 6999999999999999999999999999999996 4 8999999999999877643 7799
Q ss_pred CcHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEec
Q 005047 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHR 282 (716)
Q Consensus 238 gM~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~ 282 (716)
||.+|+++|..++++|++ ++|+||+.|++| .++++++..||++.+
T Consensus 252 GM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 252 GMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred chHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 999999999999999998 999999999999 899999889999853
No 59
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-32 Score=282.79 Aligned_cols=238 Identities=18% Similarity=0.268 Sum_probs=175.2
Q ss_pred hhhHHhhcccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccc
Q 005047 5 DSSRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQ 84 (716)
Q Consensus 5 ~~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~ 84 (716)
++++....++|++|||||||+|++++..++.+.+.+++++|+.++++|+++|||||||. +.+.+.....+ ++
T Consensus 41 ~~~~~~~~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~-i~~g~~~~~~g-------l~ 112 (281)
T 3nwy_A 41 AASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQLG-------ME 112 (281)
T ss_dssp ------CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTT-C---CCTTTTT-------CC
T ss_pred CcccccCCcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChh-HhhhHHHHhcC-------CC
Confidence 34666767889999999999999876668899999999999999999999999998754 44322111111 11
Q ss_pred ccccchhHHHHHHhchHHHHHHHHHHhccCCCccc-eEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCC
Q 005047 85 KPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSS-QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (716)
Q Consensus 85 ~~~~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~ 163 (716)
..+... ..++.+.++. .+|...|..+|+++. +..++.+++. +.+ .+.+.+ .+|++|.|||+++ .
T Consensus 113 ~~~~d~-~g~lat~~n~---~~l~~~L~~~Gi~a~~~~~~~~~~~~--~~~-~~~~~l-~lL~~g~IpVv~g-----~-- 177 (281)
T 3nwy_A 113 RTRSDY-MGMLGTVMNS---LALQDFLEKEGIVTRVQTAITMGQVA--EPY-LPLRAV-RHLEKGRVVIFGA-----G-- 177 (281)
T ss_dssp HHHHHH-HHHHHHHHHH---HHHHHHHHHTTCCEEEEESSCCGGGS--EEC-CHHHHH-HHHHTTCEEEEES-----T--
T ss_pred ccchhH-HHHHHHHHHH---HHHHHHHHHcCCCEEEEecccccccc--ccc-chHHHH-HHHHcCCeEEEEC-----C--
Confidence 111000 0123333332 267789999999873 4434444443 222 234556 7899999999986 2
Q ss_pred CCCCCCCceeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHH
Q 005047 164 APYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAK 242 (716)
Q Consensus 164 ~~~~~~g~~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~K 242 (716)
.|..|+++|++|+++|.+|+||+|+++|||||||++|| .+|++++|++|+++|+.+ .|+|..|
T Consensus 178 -----~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-----------~g~~v~k 241 (281)
T 3nwy_A 178 -----MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-----------RGLRVAD 241 (281)
T ss_dssp -----TSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-----------TTCCSSC
T ss_pred -----CCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-----------cCCCcHH
Confidence 34457999999999999999999999999999999999 599999999999988643 2567889
Q ss_pred HHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEe
Q 005047 243 VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (716)
Q Consensus 243 l~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (716)
++++..|+++|++++|+|++.|+.|.++++|+..||++.
T Consensus 242 ~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 242 ATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999999999999875
No 60
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=5.3e-32 Score=287.43 Aligned_cols=254 Identities=18% Similarity=0.128 Sum_probs=188.1
Q ss_pred cccCeEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccc
Q 005047 12 KDVKRLVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQ 87 (716)
Q Consensus 12 ~~~~~iVIKiGGs~l~~~~~--~--~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (716)
++++++||||||++|++++. + ++.+.+.+++++|+.|++.|+++|||||||+++++.+.+ .+..+.+.+..
T Consensus 2 ~~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~--~~~~~~~t~~~--- 76 (316)
T 2e9y_A 2 DSGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEA--FEALPPERPRQ--- 76 (316)
T ss_dssp --CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH--HHTSCTTSCCC---
T ss_pred CCCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHH--cCCCCCCCCHH---
Confidence 56789999999999995442 2 234789999999999999999999999999999975432 23333331111
Q ss_pred cchhHHHHHHhchH--HHHHHHHHHhccCCCc------cceEEecCcc------------CCc----------h------
Q 005047 88 NELDGKACAAVGQS--SLMALYDTLFSQLDVT------SSQLLVTDSD------------FRD----------E------ 131 (716)
Q Consensus 88 ~~l~~~~~~a~g~~--~~~~~~~~~l~~~gi~------~~~~~~~~~~------------~~~----------~------ 131 (716)
.+....+.+.|+. .+...+...|...|++ .+|+.++..| +.+ .
T Consensus 77 -~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~ 155 (316)
T 2e9y_A 77 -PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKR 155 (316)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEE
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeec
Confidence 1212233345555 3456778888888987 3455544322 100 0
Q ss_pred ----h----------hHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCC----cee-ecchHHHHHHHhhcCCCEE
Q 005047 132 ----D----------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS----GIF-WDNDSLAGLLALELKADLL 192 (716)
Q Consensus 132 ----~----------~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g----~~~-~~sD~~A~~lA~~L~Ad~L 192 (716)
+ ...++.+.|+.+|++|+|||++|++.+... .+.+| ..+ +|+|++|+++|.+|+||+|
T Consensus 156 ~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~---~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~L 232 (316)
T 2e9y_A 156 DPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVV---ERPGGVLEPVEAVVDKDLASSLLATQLNADLL 232 (316)
T ss_dssp CTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEE---ECTTSCEEECSCCCCHHHHHHHHHHHTTCSEE
T ss_pred cccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCee---ECCCCCeecceeeeCHHHHHHHHHHHcCCCEE
Confidence 0 001367899999999999999987754421 11133 223 6999999999999999999
Q ss_pred EEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCC-cEEEeeCCCcchHHHHh
Q 005047 193 VLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVL 271 (716)
Q Consensus 193 i~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l~~~~ 271 (716)
+|+|||||||+ ||.+|++++|++|+++|+++++..+ .+.+|||.+|+++|..++++|+ +++|+| ++.+.+++
T Consensus 233 iilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l 305 (316)
T 2e9y_A 233 VILTDVPGVAV-NYGREGERWLRRAAASELKKYLREG---HFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVL 305 (316)
T ss_dssp EEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHH
T ss_pred EEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHH
Confidence 99999999999 6778999999999999999876643 4778999999999999999999 599998 56688999
Q ss_pred cCCcceeEEec
Q 005047 272 EGKRVGTLFHR 282 (716)
Q Consensus 272 tg~~iGT~i~~ 282 (716)
++ ..||++.+
T Consensus 306 ~g-~~GT~i~~ 315 (316)
T 2e9y_A 306 SL-QAGTVVML 315 (316)
T ss_dssp TT-SSSEEEEC
T ss_pred cC-CCCeEEec
Confidence 98 78999864
No 61
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=4.9e-32 Score=287.92 Aligned_cols=246 Identities=19% Similarity=0.295 Sum_probs=186.3
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc-cchh
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~-~~l~ 91 (716)
++++||||||+++++++ .+.+++++|+.|++.|+++|||||||++++..+.+ .+....+.+ ++.+. ..|.
T Consensus 49 ~k~iVIKlGGs~l~~~~------~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEE------LKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGR--VGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TCEEEEEECTHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 57899999999998743 57899999999999999999999999998865532 233333322 22111 1122
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCcc-------ceEEecCc----cCCchhhHh-HHHHHHHHHHhCCCeEEeeCCCce
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTS-------SQLLVTDS----DFRDEDFRK-QLYDTVQSLLDLRVIPIFNENDAV 159 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~-------~~~~~~~~----~~~~~~~~~-~~~~~i~~ll~~g~iPV~~g~d~v 159 (716)
...+.+.|+... .+...|..+|+++ .+++.+.. |++..+.+. .+.+.|+.+|+.|.|||+++ +
T Consensus 121 ~~~~~~~G~in~--~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 195 (321)
T 2v5h_A 121 VVEMVLVGRVNK--DIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISS---V 195 (321)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEES---E
T ss_pred HHHHHHhChHHH--HHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeC---c
Confidence 222334566543 3456666667553 23344321 444332222 34688999999999999984 2
Q ss_pred ecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCC
Q 005047 160 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (716)
Q Consensus 160 ~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~gg 238 (716)
.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++.. .+++||
T Consensus 196 ~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~----g~~~gG 264 (321)
T 2v5h_A 196 AA-----DENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQ----GIVGGG 264 (321)
T ss_dssp EE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHT----TSSCTT
T ss_pred eE-----CCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhC----CCCcCc
Confidence 22 1255567 5999999999999999999999999999999986 4899999999999987664 367999
Q ss_pred cHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 239 MTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 239 M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
|.||+++|..|+++|++ ++|+||+.|+++ .++++++..||++...
T Consensus 265 M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 265 MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99999999999999999 999999999998 8899998899999876
No 62
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.98 E-value=3.4e-32 Score=279.46 Aligned_cols=240 Identities=15% Similarity=0.210 Sum_probs=167.4
Q ss_pred ccCeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCCeEE-EEeCChhHhhHHHhhhhhcccCCcccccccccc
Q 005047 13 DVKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGFEII-LVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNE 89 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~--~~~~~~~~~~~a~~I~~l~~~G~~vv-IVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 89 (716)
++|++||||||+++++++ ..++.+.+.+++++|+. |+++| ||||||++ ++.+++. .+.++.|.+.+...+.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~-~~~~~~~-~gi~~~~~~~d~~gl~ 75 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSF-GHIKAME-FGLPGPKNPRSSIGYS 75 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGG-THHHHHH-HTCSEECCHHHHHHHH
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHH-HHHHHHH-hCCCcCCCccccccHH
Confidence 378999999999999864 25777889999999985 99999 99999776 4443332 3444444221100011
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCC
Q 005047 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 169 (716)
Q Consensus 90 l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~ 169 (716)
..... +..+...+...|..+|+++.++.-.+..+ .+.+ +.+.|+.+|+.|.|||++| |++... +
T Consensus 76 ~t~~~-----~~~ln~~~v~~l~~~G~~a~~l~~~~~~~--~g~v--~~~~i~~ll~~g~ipVi~~-~~~~~~------~ 139 (249)
T 3ll5_A 76 IVHRD-----MENLDLMVIDAMIEMGMRPISVPISALRY--DGRF--DYTPLIRYIDAGFVPVSYG-DVYIKD------E 139 (249)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHTTCCEEECCGGGSCB--SSSB--CCHHHHHHHHTTCEEEEEC-EEEEEE------T
T ss_pred HHHHH-----HHHHHHHHHHHHHHCCCcEEEEcHHHccc--ccEE--cHHHHHHHHHCCCEEEECC-CEEEcC------C
Confidence 00111 12344445577888898876653222222 2222 4678999999999999996 555441 2
Q ss_pred Cce-eecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHH
Q 005047 170 SGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAY 247 (716)
Q Consensus 170 g~~-~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~ 247 (716)
+.. ++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++ +++.. ...+.+++|||.+|+++|.
T Consensus 140 ~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~----~~~~~~~tGgM~~Kl~aA~ 214 (249)
T 3ll5_A 140 HSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITF----DRVQNDVTGGIGKKFESMV 214 (249)
T ss_dssp TEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHH
T ss_pred CceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhc----ccCCCeeECCHHHHHHHHH
Confidence 333 4999999999999999999999999999999999 599999999994 33322 1223588999999999999
Q ss_pred HH-HHcCCcEEEeeCCCcchHHHHhcCCcc-eeEE
Q 005047 248 CA-ACAGIPVVITSGFAMDSIIKVLEGKRV-GTLF 280 (716)
Q Consensus 248 ~a-~~~gi~v~I~~g~~~~~l~~~~tg~~i-GT~i 280 (716)
.+ +++|++++|+||+.|+++.. +.|+.. ||++
T Consensus 215 ~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 215 KMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVI 248 (249)
T ss_dssp HHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEE
T ss_pred HHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEe
Confidence 99 89999999999999999988 888888 9987
No 63
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.98 E-value=2.6e-31 Score=275.13 Aligned_cols=217 Identities=22% Similarity=0.342 Sum_probs=168.9
Q ss_pred ccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccccchh
Q 005047 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELD 91 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~ 91 (716)
|.|++|||+||+++++. +.+++++|+.|++.|+++||||||+++++..+.+ .+.+++|.+ ++.+.
T Consensus 35 m~k~iVIKiGGs~l~~~--------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~--lg~~~~~~~G~Rvtd---- 100 (279)
T 3l86_A 35 MKDIIVIKIGGVASQQL--------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEE--NQVPVKKINGLRVTS---- 100 (279)
T ss_dssp CCCEEEEEECTTGGGSC--------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEECBC----
T ss_pred CCceEEEEEChHHHHhH--------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHH--cCCCCccCCCcccCc----
Confidence 44899999999999863 4789999999999999999999999999876543 344445543 22221
Q ss_pred HHHHHHhchHHHH----HHHHHHhccCCCccceE------EecCccCCchhhH-------hHHHHHHHHHHhCCCeEEee
Q 005047 92 GKACAAVGQSSLM----ALYDTLFSQLDVTSSQL------LVTDSDFRDEDFR-------KQLYDTVQSLLDLRVIPIFN 154 (716)
Q Consensus 92 ~~~~~a~g~~~~~----~~~~~~l~~~gi~~~~~------~~~~~~~~~~~~~-------~~~~~~i~~ll~~g~iPV~~ 154 (716)
++.+..+ +..+. ..+...|..+|+++.++ +++..++ +...+ .++.+.|+.+|+.|+|||++
T Consensus 101 ~~~l~~v-~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~-~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~ 178 (279)
T 3l86_A 101 KDDMVLV-SHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYL-DKDTYGYVGDVTHINKRVIEEFLENRQIPILA 178 (279)
T ss_dssp HHHHHHH-HHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEES-CHHHHBSBEEEEEECHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeecc-CccccCcccccchhhHHHHHHHHhCCcEEEEC
Confidence 2344444 43333 55778899999988776 4444333 11112 23689999999999999998
Q ss_pred CCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCCCC
Q 005047 155 ENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSR 233 (716)
Q Consensus 155 g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~ 233 (716)
+ +.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++ +++|++|+++|+++++.. .
T Consensus 179 ~---v~~-----~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d------~~~I~~i~~~e~~~l~~~----~ 240 (279)
T 3l86_A 179 S---LGY-----SKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLEN------GAVLEKITSHQVQEKIDT----A 240 (279)
T ss_dssp S---EEE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEET------TEECCEEEGGGSHHHHHT----T
T ss_pred C---cEE-----CCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCccccC------CEehhhccHHHHHHHHhC----C
Confidence 7 222 1255667 7999999999999999999999999999953 789999999999987764 3
Q ss_pred cccCCcHHHHHHHHHHHHcCCc-EEEeeCCC
Q 005047 234 VGRGGMTAKVNAAYCAACAGIP-VVITSGFA 263 (716)
Q Consensus 234 ~~~ggM~~Kl~aa~~a~~~gi~-v~I~~g~~ 263 (716)
+++|||.+|+++|..|++.|++ |+|+|++.
T Consensus 241 ~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~ 271 (279)
T 3l86_A 241 VITAGMIPKIESAAKTVAAGVGQVLIGDNLL 271 (279)
T ss_dssp SSCTTHHHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred CCcCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 7899999999999999999998 99999764
No 64
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.97 E-value=4.5e-31 Score=278.63 Aligned_cols=243 Identities=19% Similarity=0.271 Sum_probs=184.4
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc-cchh
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~-~~l~ 91 (716)
++++||||||+++++++ .+..++++|+.|++.|+++|||||||++++..+.+ .+.++.|.+ ++.+. ..|.
T Consensus 26 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR--LSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp TCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH--cCCCccccCCeecCCHHHHH
Confidence 57999999999998753 57899999999999999999999999999876533 233333332 22221 1122
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccce-------EEecCc----------------cCCchhh-HhHHHHHHHHHHhC
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQ-------LLVTDS----------------DFRDEDF-RKQLYDTVQSLLDL 147 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~~-------~~~~~~----------------~~~~~~~-~~~~~~~i~~ll~~ 147 (716)
-..+.+.|+.. ..+...|..+|+++.. ++.+.. |++..+. ...+.+.|+.+|+.
T Consensus 98 ~~~~~~~G~~~--~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~ 175 (300)
T 2buf_A 98 VVEMVLGGQVN--KDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKG 175 (300)
T ss_dssp HHHHHHHHTHH--HHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHH--HHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHC
Confidence 22233356653 4566788888876432 222210 3322222 12457899999999
Q ss_pred CCeEEeeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHH
Q 005047 148 RVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI 226 (716)
Q Consensus 148 g~iPV~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~ 226 (716)
|.|||+++ +.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||+++ +++|++|+++|+.+++
T Consensus 176 g~IpVi~~---v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~~-----a~~i~~i~~~e~~~~~ 242 (300)
T 2buf_A 176 DFIPVIAP---IGV-----GSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQ-----GQVLTGLSTEQVNELI 242 (300)
T ss_dssp TCEEEEEE---EEE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTT-----SCBCCEECHHHHHHHH
T ss_pred CCEEEEcC---cee-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECCC-----CcChhhCCHHHHHHHH
Confidence 99999983 222 1255667 69999999999999999999999999999973 8999999999998876
Q ss_pred hcCCCCCcccCCcHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 227 TFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 227 ~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
.. ..++|||.||+++|..++++|++ ++|+||+.|+++ .++++++..||++..+
T Consensus 243 ~~----~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 243 AD----GTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HT----TCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred Hc----CCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 64 36799999999999999999999 999999999998 8899988899999865
No 65
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.97 E-value=4.5e-31 Score=273.15 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=182.2
Q ss_pred cCeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCC------CeEEEEeCChhHhhHHHhhhhhcccCC----cc
Q 005047 14 VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQG------FEIILVSSGAVGVGRQRLRYRKLVNSS----LA 81 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~--~~~~~~~~~~~a~~I~~l~~~G------~~vvIVhGGg~~i~~~~~~~~~~~~~~----~~ 81 (716)
.+++|||+||++|++++ ..++.+.+.+++++|+.+++.| .++|||||||++ ++.+++. .+.+.. +.
T Consensus 6 ~m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~-~~~~~~~-lgi~~~~~~~~~ 83 (266)
T 3k4o_A 6 SMLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAF-GHPVAKK-YLKIEDGKKIFI 83 (266)
T ss_dssp -CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHH-HHHHHGG-GEEECSSSEEEC
T ss_pred ceEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHH-HHHHHHH-cCCCcccCcccc
Confidence 45799999999999864 3688899999999999999888 999999999886 4443332 333333 22
Q ss_pred cccccccchhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceec
Q 005047 82 DLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 161 (716)
Q Consensus 82 ~~~~~~~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~ 161 (716)
... +.+.. ..++++ .++..+...|..+|+++.++...+..+...+ ...+.+.++.+|+.|+|||+++ |++..
T Consensus 84 ~~~---~G~r~-T~~a~~--~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g-~~v~~~~i~~lL~~g~ipVi~~-~~~~~ 155 (266)
T 3k4o_A 84 NME---KGFWE-IQRAMR--RFNNIIIDTLQSYDIPAVSIQPSSFVVFGDK-LIFDTSAIKEMLKRNLVPVIHG-DIVID 155 (266)
T ss_dssp CHH---HHHHH-HHHHHH--HHHHHHHHHHHTTTCCEEEECGGGTCEESSS-CBCCCHHHHHHHHTTCEEEEEC-EEEEE
T ss_pred ccc---CceeH-HHHHHH--HHHHHHHHHHHHCCCcEEEeeHHHcCcccCc-eEecHHHHHHHHHCCCEEEEeC-CEEEc
Confidence 000 11100 112222 3455677889999998876533221111111 1234688999999999999995 55554
Q ss_pred CCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHh--cCCCCCcccCC
Q 005047 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGG 238 (716)
Q Consensus 162 ~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~--~g~~~~~~~gg 238 (716)
. +++.+ +|+|++|+++|.+|+||+|+|+||||||| +|| +++++++.+|+++++. .++.+.+++||
T Consensus 156 ~------~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~tGG 223 (266)
T 3k4o_A 156 D------KNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDVTGG 223 (266)
T ss_dssp S------SSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCCSSH
T ss_pred C------CCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcccCC
Confidence 2 33344 99999999999999999999999999999 665 6899999887776543 24456789999
Q ss_pred cHHHHHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 239 MTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 239 M~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
|.+||++|..+++ +|+|+||+.|+.|.++++|+..||++.+.
T Consensus 224 M~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 224 MKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999999999988 99999999999999999999999999865
No 66
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.97 E-value=3.8e-31 Score=277.29 Aligned_cols=242 Identities=21% Similarity=0.286 Sum_probs=183.0
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc-cchh
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~-~~l~ 91 (716)
++++||||||+++++++ .+.+++++|+.+++.|+++|||||||++++..+.. .+..+.+.+ ++.+. ..+.
T Consensus 21 ~~~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQEN------AKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKD--LGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp TCEEEEEECSHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHH--HTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCChh------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 67999999999998743 57899999999999999999999999999876532 233333322 22221 1121
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccce-------EEecCc-----cCCchhhH-hHHHHHHHHHHhCCCeEEeeCCCc
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQ-------LLVTDS-----DFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDA 158 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~~-------~~~~~~-----~~~~~~~~-~~~~~~i~~ll~~g~iPV~~g~d~ 158 (716)
...+.+.|+.. ..+...|..+|+++.. ++.+.. |++..+.. ..+.+.|+.+|+.|.|||+++
T Consensus 93 ~~~~~~~G~~~--~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~--- 167 (282)
T 2bty_A 93 IVEMVLVGKIN--KEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAP--- 167 (282)
T ss_dssp HHHHHHHHTHH--HHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEES---
T ss_pred HHHHHHhhHHH--HHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECC---
Confidence 11222356653 3466788888876432 333321 33322221 234789999999999999986
Q ss_pred eecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccC
Q 005047 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (716)
Q Consensus 159 v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~g 237 (716)
+.. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++ | ++|++|+++|+.++... +.++|
T Consensus 168 v~~-----~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-~-----~~i~~i~~~e~~~~~~~----g~~~g 232 (282)
T 2bty_A 168 VGI-----GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-G-----KLISTLTPDEAEELIRD----GTVTG 232 (282)
T ss_dssp EEE-----CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-T-----EECCEECHHHHHHHHTT----TCSCT
T ss_pred Ccc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-c-----hhhhhCCHHHHHHHHHc----CCCCC
Confidence 221 1245566 6999999999999999999999999999997 2 89999999999887654 36799
Q ss_pred CcHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 238 gM~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
||.+|+++|..|+++|++ ++|+||+.|+++ .++++++..||++.++
T Consensus 233 GM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp THHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred cHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 999999999999999998 999999999998 8899998899999765
No 67
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.97 E-value=5.4e-31 Score=278.13 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=175.4
Q ss_pred HHhhcccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhh-cccCCccccccc
Q 005047 8 RAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRK-LVNSSLADLQKP 86 (716)
Q Consensus 8 ~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~-~~~~~~~~~~~~ 86 (716)
+...|.||+||||+||++|.+.. ..+.+.++.++++|+.|.+.|+++|||||||||+|....+... .....+ +..
T Consensus 18 ~~d~K~MkRIVIklGGnAL~~~~-~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~--~~~- 93 (332)
T 4axs_A 18 DDDDKHMSRIVIALGGNALGDNP-SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEK--TAL- 93 (332)
T ss_dssp --------CEEEEECGGGGCSSH-HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSC--CCC-
T ss_pred cccccCcceEEEEEChhhcCCCh-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCC--CCC-
Confidence 34557788999999999997632 2345678899999999999999999999999999976543221 111111 111
Q ss_pred ccchhHHHHHHhchHH----HHHHHHHHhccCCCcc------ceEEecCcc--CC-------------------------
Q 005047 87 QNELDGKACAAVGQSS----LMALYDTLFSQLDVTS------SQLLVTDSD--FR------------------------- 129 (716)
Q Consensus 87 ~~~l~~~~~~a~g~~~----~~~~~~~~l~~~gi~~------~~~~~~~~~--~~------------------------- 129 (716)
+.+ +.+.+.++.. +...+.+.|...++.. .|+.++..| |.
T Consensus 94 -~~l--~~~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~ 170 (332)
T 4axs_A 94 -VPF--AEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVI 170 (332)
T ss_dssp -CCH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCC
T ss_pred -chh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEE
Confidence 111 1222222221 2334556666666542 233333222 00
Q ss_pred ----chhhHh----------HHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEE
Q 005047 130 ----DEDFRK----------QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVL 194 (716)
Q Consensus 130 ----~~~~~~----------~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~ 194 (716)
..++++ ++.+.|+.|+++|+|||..|.+.+..........|..+ +|+|++|++||.+|+||+|+|
T Consensus 171 ~~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~Lii 250 (332)
T 4axs_A 171 VEDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVV 250 (332)
T ss_dssp C--------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEE
T ss_pred EEccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEE
Confidence 011111 35789999999999999877554443222222233334 999999999999999999999
Q ss_pred eecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCCc--EEEeeCCCcchHHHHhc
Q 005047 195 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP--VVITSGFAMDSIIKVLE 272 (716)
Q Consensus 195 ~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~--v~I~~g~~~~~l~~~~t 272 (716)
+|||||||+++| +|++++|++++.+|+.+++..+ .+.+|||.||+++|+.+++.|.. ++|.+ ++.+.+++.
T Consensus 251 LTdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~g---~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~ 323 (332)
T 4axs_A 251 LTAVDYVYVDFN-KPTQKALKTVDVKALNNFINQD---QFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALK 323 (332)
T ss_dssp ECSCSSCEESTT-STTCEECSSCBHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTT
T ss_pred EecCCceEcCCC-CcchhhcccCCHHHHHHHHHCC---CcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHC
Confidence 999999999887 6888999999999999888754 47899999999999999998774 55654 567888888
Q ss_pred CCcceeEEec
Q 005047 273 GKRVGTLFHR 282 (716)
Q Consensus 273 g~~iGT~i~~ 282 (716)
|+ .||+|.+
T Consensus 324 g~-~GT~IvA 332 (332)
T 4axs_A 324 GL-SGTKIIA 332 (332)
T ss_dssp TS-SSEEEBC
T ss_pred CC-CCcEEeC
Confidence 86 6999864
No 68
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.97 E-value=8.5e-31 Score=270.42 Aligned_cols=234 Identities=17% Similarity=0.244 Sum_probs=170.2
Q ss_pred HHhhcccCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccccc
Q 005047 8 RAFVKDVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (716)
Q Consensus 8 ~~~~~~~~~iVIKiGGs~l~~~~~-~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~ 86 (716)
+..++++|++|||||||+++++++ .++.+.+.+++++|+.++ .|+++|||||||..+....+.. .+.+..+.+
T Consensus 18 ~~~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~-~g~~~~~~~---- 91 (256)
T 2va1_A 18 GSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKE-LDMDRNLAD---- 91 (256)
T ss_dssp -----CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHH-TTCCHHHHH----
T ss_pred hhhhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHH-cCCCCCchh----
Confidence 334567899999999999997642 578889999999999999 8999999999877554432221 122111111
Q ss_pred ccchhHHHHHHhchHHHHHHHHHHhccCCCccceE-EecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCC
Q 005047 87 QNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAP 165 (716)
Q Consensus 87 ~~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~ 165 (716)
...++.+..+..+ +...|...|+++..+ .++.+++.+. + .+.+. ..+|+.|+|||++| .
T Consensus 92 ----~~~~l~~~~n~~l---~~~~l~~~Gi~a~~~~~~t~~~~~~~--~-~~~~~-~~lL~~g~IpVi~~-----~---- 151 (256)
T 2va1_A 92 ----NMGMMATIINGLA---LENALNHLNVNTIVLSAIKCDKLVHE--S-SANNI-KKAIEKEQVMIFVA-----G---- 151 (256)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHTTTCCEEEEESSCCTTTCEE--C-CHHHH-HHHHHTTCEEEEES-----T----
T ss_pred ----HHHHHHHHHHHHH---HHHHHHHcCCCeEEEeeeecccccch--h-hHHHH-HHHHhCCcEEEEEC-----C----
Confidence 0123444444333 257888899877433 2333444322 2 23444 78999999999986 1
Q ss_pred CCCCCceeecchHHHHHHHhhcCCCEEEEeec-CCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHH
Q 005047 166 YEDSSGIFWDNDSLAGLLALELKADLLVLLSD-VEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV 243 (716)
Q Consensus 166 ~~~~g~~~~~sD~~A~~lA~~L~Ad~Li~~TD-VdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl 243 (716)
.|..++++|++|+++|.+|+||+|+|+|| |||||++|| ++|++++|++|+++|+.++ + .|+| |+
T Consensus 152 ---~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m--k~ 217 (256)
T 2va1_A 152 ---TGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM--DA 217 (256)
T ss_dssp ---TSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--CH
T ss_pred ---CCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--cH
Confidence 34557899999999999999999999999 999999999 5899999999999998764 1 2788 99
Q ss_pred HHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEe
Q 005047 244 NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (716)
Q Consensus 244 ~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (716)
++|..|.++|++++|+|++.|+.+.++++|+..||++.
T Consensus 218 ~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 218 TALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp HHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999999999988999985
No 69
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=7.1e-31 Score=273.09 Aligned_cols=235 Identities=22% Similarity=0.206 Sum_probs=169.6
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhccc---CCccc-c--cccccc
Q 005047 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVN---SSLAD-L--QKPQNE 89 (716)
Q Consensus 16 ~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~---~~~~~-~--~~~~~~ 89 (716)
++||||||++++ . +.+++++|+.+++.|+++|||||||++++..+.+ .+.. ..+.+ + +.+..
T Consensus 1 ~iViKlGGs~l~--~-------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~--~~~~~~~~~~~~g~~~rvt~~- 68 (269)
T 2egx_A 1 MIVVKVGGAEGI--N-------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEA--LGHPPRFLTHPGGQVSRLTDR- 68 (269)
T ss_dssp CEEEEECCSTTC--C-------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHH--TTCCCCC-------CCCCCCH-
T ss_pred CEEEEECHHHHH--H-------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHH--cCCccccccccCCccCcCCCH-
Confidence 589999999997 3 7899999999999999999999999998765432 2222 11111 1 11110
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCcc----------------------CCchhh-HhHHHHHHHHHHh
Q 005047 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSD----------------------FRDEDF-RKQLYDTVQSLLD 146 (716)
Q Consensus 90 l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~----------------------~~~~~~-~~~~~~~i~~ll~ 146 (716)
-..+.+.++++..+...+...|..+|+++..+...+.. ++..+. ...+.+.|+.+|+
T Consensus 69 ~~l~~~~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~ 148 (269)
T 2egx_A 69 KTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQ 148 (269)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHH
Confidence 11124444434334567788998899876533211111 111111 1245789999999
Q ss_pred CCCeEEeeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchH--
Q 005047 147 LRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ-- 223 (716)
Q Consensus 147 ~g~iPV~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~-- 223 (716)
.|.|||+++ ..+. .+|..+ +|+|++|+++|.+|+||+|+|+|||||||+ || .|++++|++|+++|+.
T Consensus 149 ~g~ipVi~~-v~~~-------~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~ 218 (269)
T 2egx_A 149 AGYLPVLTP-PALS-------YENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDP 218 (269)
T ss_dssp TTCEEEEEC-CEEE-------TTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCH
T ss_pred CCCEEEEcC-cEEC-------CCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHH
Confidence 999999985 1111 245555 999999999999999999999999999999 88 6899999999999998
Q ss_pred HHHhcCCCCCcccCCcHHHHHHHHHHHHcCC-cEEEeeCCCcchHHHHhcCCcceeEE
Q 005047 224 AEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLF 280 (716)
Q Consensus 224 ~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l~~~~tg~~iGT~i 280 (716)
++ . .+++|||.+|+++|..|+++|+ +++|+|++.|+++...+.| .||++
T Consensus 219 ~l-~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 219 EY-L-----ALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp HH-H-----TTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred Hh-c-----CCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 76 2 3789999999999999999999 7999999999999888877 79986
No 70
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=9.1e-31 Score=265.60 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=165.1
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHH--hhhhhcccCCcccccccccchhH
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQR--LRYRKLVNSSLADLQKPQNELDG 92 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 92 (716)
+++|||||||+++++ +.+.+.+++++|+.+++.|+++|||||||+...... .+. .+.+ .. .+
T Consensus 1 ~~iViK~GGs~l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~-~g~~-------~~--~~-- 64 (226)
T 2j4j_A 1 MNIILKISGKFFDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLARE-IGIG-------EA--YL-- 64 (226)
T ss_dssp CEEEEEECTHHHHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHH-TTCC-------HH--HH--
T ss_pred CeEEEEeccccccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHH-hCCC-------cc--cH--
Confidence 479999999999854 355789999999999999999999999877544421 211 1111 00 01
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce
Q 005047 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (716)
Q Consensus 93 ~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~ 172 (716)
..+.+++......++...|..+|+.. +. .+.+.++.+|+.|.|||++| +.+
T Consensus 65 ~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~-------~~~~~i~~ll~~g~ipVi~g--------------g~~ 115 (226)
T 2j4j_A 65 DLLGIWASRLNAYLVMFSLQDLAYMH--------VP-------QSLEEFIQDWSHGKVVVTGG--------------FQP 115 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSBCSC--------CC-------SSHHHHHHHHTTSSBEEECC--------------CST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--------Cc-------CCHHHHHHHHHCCCEEEEcC--------------CCC
Confidence 12233333332333456787777632 11 12456889999999999986 112
Q ss_pred eecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCc--HHHHHHHHHH
Q 005047 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM--TAKVNAAYCA 249 (716)
Q Consensus 173 ~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM--~~Kl~aa~~a 249 (716)
++++|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++..+ +..+||| .+|++++..|
T Consensus 116 ~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~---~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 116 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS---QSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC---CCCcCCccccchHHHHHHH
Confidence 4899999999999999999999999999999999 58999999999999998875431 3678999 9999999999
Q ss_pred HHcCCcEEEeeCCCcchHHHHhcCCcceeEEec
Q 005047 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (716)
Q Consensus 250 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (716)
.++|++++|+|++.|+++.++++|+..||++.+
T Consensus 193 ~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred HHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999999989999864
No 71
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.97 E-value=3.7e-30 Score=262.70 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=170.2
Q ss_pred cCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchhH
Q 005047 14 VKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 92 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~-~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (716)
+|++|||+|||++++++ +.++.+.+.+++++|+.+++.|+++|||||||..+.. +.....+. ++..+...-
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g-~~~~~~G~------~~~~~~~~~- 78 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRG-VSAAQGGI------IRRTSGDYM- 78 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------C------CCHHHHHHH-
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhH-hHHHhcCC------CCCCCHHHH-
Confidence 68999999999999743 3688889999999999999999999999999764432 21111110 111110000
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce
Q 005047 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (716)
Q Consensus 93 ~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~ 172 (716)
.++++..+ ..+++..|..+|+++. .++..++.....+ .+.+.+..+|+.|.|||++| . .|.+
T Consensus 79 ~~la~~~n---~~l~~~~l~~~G~~av--~lt~~d~~~~~~~-~~~~~i~~lL~~g~ipVi~~-----~-------~g~~ 140 (240)
T 4a7w_A 79 GMLATVIN---AVAMQEALEHIGLDTR--VQSAIEIKEICES-YIYRKAIRHLEKGRVVIFGA-----G-------TGNP 140 (240)
T ss_dssp HHHHHHHH---HHHHHHHHHHTTCCEE--EEESSCCTTTSEE-CCHHHHHHHHHTTCEEEEES-----T-------TSCT
T ss_pred HHHHHHHH---HHHHHHHHHHCCCCEE--EecHHHcCcccCc-CcHHHHHHHHHCCCEEEEeC-----C-------CCCC
Confidence 12223322 2346688999998873 3444343321111 24567889999999999986 1 3344
Q ss_pred eecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHH
Q 005047 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 251 (716)
Q Consensus 173 ~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~ 251 (716)
++|+|++|+++|.+|+||+|+++|||||||++|| .+|++++|++++++|+.+. ..++| |++++..|++
T Consensus 141 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---------g~~~m--~~~a~~~a~~ 209 (240)
T 4a7w_A 141 FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---------DIEVM--DDTAISLAKD 209 (240)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---------SCCSS--CHHHHHHHHH
T ss_pred CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---------Ccccc--HHHHHHHHHH
Confidence 6999999999999999999999999999999999 5999999999999988652 25678 6799999999
Q ss_pred cCCcEEEeeCCCcchHHHHhcC-CcceeEE
Q 005047 252 AGIPVVITSGFAMDSIIKVLEG-KRVGTLF 280 (716)
Q Consensus 252 ~gi~v~I~~g~~~~~l~~~~tg-~~iGT~i 280 (716)
+|++++|+|++.|+++...+.| +.+||.+
T Consensus 210 ~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 210 NKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp TTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999776655 4689986
No 72
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=4.6e-30 Score=262.80 Aligned_cols=231 Identities=16% Similarity=0.214 Sum_probs=172.2
Q ss_pred ccCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchh
Q 005047 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~-~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (716)
+++++|||||||+++++++ .++.+.+.+++++|+.+++.|+++|||||||..+....+.. .+.....
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~-~~~~~~~----------- 73 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA-GSMDRAT----------- 73 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHH-TTSCHHH-----------
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHH-cCCCCcc-----------
Confidence 4689999999999997643 57788899999999999999999999999976443321111 1111000
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccceEEe-cCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCC
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g 170 (716)
...+..++......++...|...|+++..+.. +..++.+ .+ .+.+.+ .+|+.|.|||++| . .|
T Consensus 74 ~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--~~-~~~~~~-~ll~~g~ipVv~g-----~-------~g 137 (239)
T 1ybd_A 74 ADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--TY-ARPKAI-QYLEEGKVVIFAA-----G-------TG 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--EC-CHHHHH-HHHHTTCEEEEES-----T-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--ch-hHHHHH-HHHhCCcEEEEEC-----C-------cc
Confidence 01122233322223345788888887643322 1122211 11 134556 7899999999975 1 23
Q ss_pred ceeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHH
Q 005047 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (716)
Q Consensus 171 ~~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (716)
..++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.++ + .++| |++++..|
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~a~~~a 206 (239)
T 1ybd_A 138 NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---N------LKVM--DATAFALC 206 (239)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---T------CCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---c------cccc--CHHHHHHH
Confidence 346999999999999999999999999999999999 5999999999999998752 2 4677 77899999
Q ss_pred HHcCCcEEEeeCCCcchHHHHhcCCcceeEEec
Q 005047 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (716)
Q Consensus 250 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (716)
.++|++++|+|++.|+.+.++++|+..||++.+
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999989999853
No 73
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.97 E-value=1.6e-30 Score=275.75 Aligned_cols=252 Identities=19% Similarity=0.203 Sum_probs=177.5
Q ss_pred ccCeEEEEeCCcccccCCCccc----HHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccccccc
Q 005047 13 DVKRLVVKVGTAVVTRSDGRLA----LGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~~~~----~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (716)
|++++|||+||+++++ + ..+ .+.+.+++++|+.|++.|+++|||||||++++..+.+. +...++. .+..
T Consensus 1 ~~k~iVIKlGGs~l~~-~-~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~--~~~~~~~-~~~~-- 73 (310)
T 2we5_A 1 MGKKMVVALGGNAILS-N-DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQ--QAADSEK-NPAM-- 73 (310)
T ss_dssp -CCEEEEECCGGGGCC-S-SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHH--HHTCSSS-SCCC--
T ss_pred CCcEEEEEEChHHhcC-C-CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHc--CCCCCCC-CCHH--
Confidence 4579999999999987 2 233 37899999999999999999999999999999754322 2222221 1111
Q ss_pred chhHHHHHHhchHHH--HHHHHHHhccCCCcc-------------------------ceEEecCcc--------C---Cc
Q 005047 89 ELDGKACAAVGQSSL--MALYDTLFSQLDVTS-------------------------SQLLVTDSD--------F---RD 130 (716)
Q Consensus 89 ~l~~~~~~a~g~~~~--~~~~~~~l~~~gi~~-------------------------~~~~~~~~~--------~---~~ 130 (716)
.+.-..+.+.|+.+. ...+...|...|++. .++ ++..+ + .+
T Consensus 74 ~l~~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~-~t~~da~~l~~~~~~~~~~ 152 (310)
T 2we5_A 74 PLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPF-LTEAEAKEAMQAGAIFKED 152 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEE-ECHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEe-ccHHHHHHHHhcccccccc
Confidence 111112233343322 122345565555431 111 11111 2 00
Q ss_pred --hhh----------HhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeec
Q 005047 131 --EDF----------RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSD 197 (716)
Q Consensus 131 --~~~----------~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TD 197 (716)
.++ ..++.+.|+.+|++|+|||++|++.+...+. +..|..+ +|+|++|+++|.+|+||+|+|+||
T Consensus 153 ~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~--~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTd 230 (310)
T 2we5_A 153 AGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQ--ELKGVEAVIDKDFASEKLAELVDADALVILTG 230 (310)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETT--TTEECCCCCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCC--CCCCcEeecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 011 1146899999999999999997555443111 1133333 999999999999999999999999
Q ss_pred CCccccCCCcccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCC--cEEEeeCCCcchHHHHhcCCc
Q 005047 198 VEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKR 275 (716)
Q Consensus 198 VdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi--~v~I~~g~~~~~l~~~~tg~~ 275 (716)
|||||+ ||.+|++++|++++++|+++++..+ ...+|||.+|+++|..++++|+ +++|+| ++.+.++++|+.
T Consensus 231 VdGVy~-dp~~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~ 303 (310)
T 2we5_A 231 VDYVCI-NYGKPDEKQLTNVTVAELEEYKQAG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEI 303 (310)
T ss_dssp CSSCEE-STTSTTCEECCEEEHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBC
T ss_pred chHhhC-CCCCCCCeECCEEcHHHHHHHhhCC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCC
Confidence 999999 6778999999999999998876643 3556999999999999999999 699997 566888899988
Q ss_pred ceeEEe
Q 005047 276 VGTLFH 281 (716)
Q Consensus 276 iGT~i~ 281 (716)
.||++.
T Consensus 304 ~GT~i~ 309 (310)
T 2we5_A 304 VGTVVT 309 (310)
T ss_dssp CSEEEE
T ss_pred CCeEEe
Confidence 999875
No 74
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.97 E-value=3.7e-30 Score=272.81 Aligned_cols=253 Identities=20% Similarity=0.253 Sum_probs=181.5
Q ss_pred ccCeEEEEeCCcccccCCC----cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccccccc
Q 005047 13 DVKRLVVKVGTAVVTRSDG----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~----~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (716)
|++++||||||+++++++. .++.+.+.+++++|+.|++.|+++|||||||++++..+.+... ...+..++...
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~--~~~~~~~~~~~- 77 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDA--GQATYGIPAQP- 77 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH--HHHHHCCCCCC-
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccC--ccccCCCChhH-
Confidence 5689999999999996553 2456789999999999999999999999999999987654321 11110011111
Q ss_pred chhHHHHHHh--chH--HHHHHHHHHhccCCCcc------ceEEecCcc--CCc--------------------h-----
Q 005047 89 ELDGKACAAV--GQS--SLMALYDTLFSQLDVTS------SQLLVTDSD--FRD--------------------E----- 131 (716)
Q Consensus 89 ~l~~~~~~a~--g~~--~~~~~~~~~l~~~gi~~------~~~~~~~~~--~~~--------------------~----- 131 (716)
+ +.+.+. |+. .+..++...|...|+++ .|+.++..| |.. .
T Consensus 78 -l--~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~ 154 (314)
T 1e19_A 78 -M--DVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVK 154 (314)
T ss_dssp -H--HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred -H--HHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccc
Confidence 1 133333 322 24566778888888863 344433221 110 0
Q ss_pred -----h----------hHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCC---Cce-eecchHHHHHHHhhcCCCEE
Q 005047 132 -----D----------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS---SGI-FWDNDSLAGLLALELKADLL 192 (716)
Q Consensus 132 -----~----------~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~---g~~-~~~sD~~A~~lA~~L~Ad~L 192 (716)
+ ...++.+.|+.+|++|+|||++|+..+... .+.+ |.. ++|+|++|+++|.+|+||+|
T Consensus 155 g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~---~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~l 231 (314)
T 1e19_A 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVI---LEDGEIKGVEAVIDKDLAGEKLAEEVNADIF 231 (314)
T ss_dssp ECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEE---EETTEEEECCCCCCHHHHHHHHHHHTTCSEE
T ss_pred ccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeE---ECCCCcceeEEeccHHHHHHHHHHHcCCCEE
Confidence 0 011367899999999999999863322210 1112 222 49999999999999999999
Q ss_pred EEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHc-CCcEEEeeCCCcchHHHHh
Q 005047 193 VLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVL 271 (716)
Q Consensus 193 i~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~-gi~v~I~~g~~~~~l~~~~ 271 (716)
+|+|||||||++|| +|++++|++|+++|+.+++..+ .+.+|||.|||++|..+++. +++++|+|+ +.+.+++
T Consensus 232 i~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~ 304 (314)
T 1e19_A 232 MILTDVNGAALYYG-TEKEQWLREVKVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEAL 304 (314)
T ss_dssp EEEESSSSCEETTT-STTCEECCEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHH
T ss_pred EEeccCCEEECCCC-CCCCeECCEECHHHHHHHHhCC---CcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHH
Confidence 99999999999999 7999999999999999877643 47789999999999987765 567999984 5688888
Q ss_pred cCCcceeEEec
Q 005047 272 EGKRVGTLFHR 282 (716)
Q Consensus 272 tg~~iGT~i~~ 282 (716)
++ ..||++.+
T Consensus 305 ~g-~~GT~i~~ 314 (314)
T 1e19_A 305 EG-KTGTQVLP 314 (314)
T ss_dssp TT-SSSEEEEC
T ss_pred cC-CCCeEEcC
Confidence 88 48998853
No 75
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.97 E-value=3e-30 Score=263.64 Aligned_cols=230 Identities=19% Similarity=0.227 Sum_probs=170.1
Q ss_pred ccCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHh-hHHHhhhhhcccCCcccccccccch
Q 005047 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGV-GRQRLRYRKLVNSSLADLQKPQNEL 90 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~-~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i-~~~~~~~~~~~~~~~~~~~~~~~~l 90 (716)
++|++|||+|||+|+++++ .++.+.+.+++++|+.+++.|++++||||||... +... ...+. +... .
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~--~~~g~-------~~~~--~ 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGL--AASGM-------DRVT--G 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTT--SCSSS-------CHHH--H
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH--HHcCC-------CCCC--H
Confidence 4789999999999998764 6888999999999999999999999999986521 2211 11111 1000 0
Q ss_pred hHHHHHHhchHHHHH-HHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCC
Q 005047 91 DGKACAAVGQSSLMA-LYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 169 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~-~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~ 169 (716)
....+.+- .+.. ++..+|.+.|+++..+...+-... ... .+.+.+..+|+.|.|||++| . .
T Consensus 77 d~~g~l~t---~~N~~~l~~al~~~G~~a~~~~~~~~~~v-~~~--~~~~~~~~lL~~g~IpVv~~-----~-------~ 138 (243)
T 3ek6_A 77 DHMGMLAT---VINALAMQDALEKLGAKVRVMSAIKINDV-CED--FIRRRAIRHLEKGRIAIFAA-----G-------T 138 (243)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHTTCCEEEEESSCBTTT-BEE--CCHHHHHHHHHTTCEEEEES-----T-------T
T ss_pred HHHHHHHH---HHHHHHHHHHHHHcCCCeEEechhhcCcc-cCc--CCHHHHHHHHHCCcEEEEEC-----C-------C
Confidence 00011110 1122 356788888876543321110000 000 12456889999999999986 1 3
Q ss_pred CceeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHH
Q 005047 170 SGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (716)
Q Consensus 170 g~~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (716)
|..++++|++|+++|.+|+||+|+++|||||||++|| .+|++++|++++++|+.+. + .++| |++++..
T Consensus 139 g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g------~~~~--~~~a~~~ 207 (243)
T 3ek6_A 139 GNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---G------LEVM--DTAAFAL 207 (243)
T ss_dssp SSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHHH---T------CCSS--CHHHHHH
T ss_pred CCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHhC---C------chhH--HHHHHHH
Confidence 4457999999999999999999999999999999999 5999999999999987651 1 2345 7899999
Q ss_pred HHHcCCcEEEeeCCCcchHHHHhcCCcceeEEec
Q 005047 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (716)
Q Consensus 249 a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (716)
|.++|++++|+|++.|+++.++++|+..||++.+
T Consensus 208 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 208 ARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 9999999999999999999999999999999875
No 76
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.97 E-value=1e-29 Score=261.86 Aligned_cols=231 Identities=17% Similarity=0.218 Sum_probs=174.0
Q ss_pred ccCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHh-hHHHhhhhhcccCCcccccccccch
Q 005047 13 DVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGV-GRQRLRYRKLVNSSLADLQKPQNEL 90 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~-~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i-~~~~~~~~~~~~~~~~~~~~~~~~l 90 (716)
+++++|||||||++++++ ..++.+.+.+++++|+.+++.|+++|||||||+.+ ++. +.. .+....+.+ .+
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~-lg~~~~~~~------~~ 77 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AAD-AGMDRVQAD------YT 77 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHH-HTCCHHHHH------HH
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-HHH-cCCCCCchH------HH
Confidence 368999999999999743 35788899999999999999999999999987643 332 211 122111100 00
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCccceEEec-CccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCC
Q 005047 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVT-DSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 169 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~ 169 (716)
.++...++. .++...|.+.|+++..+... ..++.+ .+. +.+. ..+|+.|.|||++| . .
T Consensus 78 --~~~~~~~~~---~ll~~al~~~G~~~~~~~~~~~~~~~~--~~~-~~~~-~~lL~~g~IpVi~~-----~-------~ 136 (252)
T 1z9d_A 78 --GMLGTVMNA---LVMADSLQHYGVDTRVQTAIPMQNVAE--PYI-RGRA-LRHLEKNRIVVFGA-----G-------I 136 (252)
T ss_dssp --HHHHHHHHH---HHHHHHHHTTTCCEEEEESSCBTTTBE--ECC-HHHH-HHHHHTTCEEEEES-----T-------T
T ss_pred --HHHHHHHHH---HHHHHHHHHcCCCeEEEeccccccccC--cch-HHHH-HHHHhCCCEEEEeC-----C-------c
Confidence 122233232 23457888889876543322 122322 122 3444 79999999999986 1 2
Q ss_pred CceeecchHHHHHHHhhcCCCEEEEee-cCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHH
Q 005047 170 SGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAY 247 (716)
Q Consensus 170 g~~~~~sD~~A~~lA~~L~Ad~Li~~T-DVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~ 247 (716)
|..++|+|++|+++|.+|+||+|+|+| ||||||++|| .+|++++|++|+++|+.+ . ..++| |++++.
T Consensus 137 g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~------~~~~m--k~~aa~ 205 (252)
T 1z9d_A 137 GSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---R------GLKIM--DATAST 205 (252)
T ss_dssp SCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---T------TCCCS--CHHHHH
T ss_pred CCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---c------ccccc--CHHHHH
Confidence 334699999999999999999999999 9999999999 599999999999998864 2 24788 889999
Q ss_pred HHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 248 CAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 248 ~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
.|.++|++|+|+|++.|+.+.++++|+..||++.+.
T Consensus 206 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 206 LSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 999999999999999999999999999899999875
No 77
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=8.6e-30 Score=261.80 Aligned_cols=232 Identities=20% Similarity=0.250 Sum_probs=168.8
Q ss_pred ccCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchh
Q 005047 13 DVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~-~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (716)
+++++|||||||++++++ ..++.+.+.+++++|+.+++.|+++|||||||.......+.. .+....+
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~-~g~~~~~----------- 74 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAK-AGMNRVV----------- 74 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHH-TTCCHHH-----------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHH-cCCCCCc-----------
Confidence 368999999999998743 257888999999999999999999999999866443221111 1111000
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCccceEEecC-ccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCC
Q 005047 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTD-SDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (716)
Q Consensus 92 ~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~-~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g 170 (716)
...+.+++......++...|.+.|+++..+...+ .++.+ .+. +.+ +..+|+.|.|||++| . .|
T Consensus 75 ~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~--~~~-~~~-~~~ll~~g~ipVi~~-----~-------~g 138 (247)
T 2a1f_A 75 GDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICD--TYN-WSE-AIKMLREKRVVIFSA-----G-------TG 138 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE--ECC-HHH-HHHHHHTTCEEEEES-----T-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc--hhh-HHH-HHHHHhCCCEEEEeC-----C-------cC
Confidence 0122233332222335678888898765433221 22211 122 233 478999999999986 1 23
Q ss_pred ceeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHH
Q 005047 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (716)
Q Consensus 171 ~~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (716)
..++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.++ + .++| |++++..|
T Consensus 139 ~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~aa~~a 207 (247)
T 2a1f_A 139 NPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---E------LKVM--DLSAFTLA 207 (247)
T ss_dssp CSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---T------CCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---C------cccc--CHHHHHHH
Confidence 456999999999999999999999999999999999 5999999999999988752 2 4677 77899999
Q ss_pred HHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 250 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
.++|++++|+|++.|+.+.++++|+..||++...
T Consensus 208 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 208 RDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp HHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred HHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999999999876
No 78
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=1.1e-29 Score=263.12 Aligned_cols=258 Identities=21% Similarity=0.277 Sum_probs=181.7
Q ss_pred hcccCeEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccccc
Q 005047 11 VKDVKRLVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (716)
Q Consensus 11 ~~~~~~iVIKiGGs~l~~~~~--~--~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~ 86 (716)
+.+.|++||+|||++|..... + .+.++++..+++|+.+.+.|++++|+||+|||+|...++..... . ...
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~----~--~~~ 75 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA----G--VSP 75 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT----S--SSC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc----c--cCC
Confidence 356789999999999965321 2 35668899999999999999999999999999998665432111 0 123
Q ss_pred ccchhHHHHHHhchHHHH--HHHHHHhccCCCccc------eEEecCcc--CC---------------------------
Q 005047 87 QNELDGKACAAVGQSSLM--ALYDTLFSQLDVTSS------QLLVTDSD--FR--------------------------- 129 (716)
Q Consensus 87 ~~~l~~~~~~a~g~~~~~--~~~~~~l~~~gi~~~------~~~~~~~~--~~--------------------------- 129 (716)
.+.|+...+.+.|+.+.+ ..+.+.|...|+... |+.+...| |.
T Consensus 76 ~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 76 EMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------
T ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeE
Confidence 345655666677776653 345677777775421 22221111 11
Q ss_pred ----chhhHh----------HHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce-eecchHHHHHHHhhcCCCEEEE
Q 005047 130 ----DEDFRK----------QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVL 194 (716)
Q Consensus 130 ----~~~~~~----------~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~-~~~sD~~A~~lA~~L~Ad~Li~ 194 (716)
.+++++ ++.+.|+.||++|+|||+.|...+....-.+...|.. ++|+|++|+++|.+|+||+|+|
T Consensus 156 ~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIi 235 (317)
T 3kzf_A 156 REDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235 (317)
T ss_dssp ------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEE
T ss_pred eecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEE
Confidence 011111 3568999999999997776433332110000111222 3999999999999999999999
Q ss_pred eecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCC-cEEEeeCCCcchHHHHhcC
Q 005047 195 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEG 273 (716)
Q Consensus 195 ~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l~~~~tg 273 (716)
+|||||||+ ||++|++++|++++++|+++++.. +.+.+|||.+|+++|+.+++.|+ ++||+|+ +.+.++++|
T Consensus 236 LTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~~---g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G 308 (317)
T 3kzf_A 236 LTDVLNACI-NYKKPDERKLEEIKLSEILALEKD---GHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG 308 (317)
T ss_dssp CCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHTT---TSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTT
T ss_pred ecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHhc---CCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCC
Confidence 999999999 887899999999999999987753 34778999999999999988655 5999994 567788888
Q ss_pred CcceeEEec
Q 005047 274 KRVGTLFHR 282 (716)
Q Consensus 274 ~~iGT~i~~ 282 (716)
+ .||++.+
T Consensus 309 ~-~GT~I~~ 316 (317)
T 3kzf_A 309 K-CGTRIIK 316 (317)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEec
Confidence 7 7999875
No 79
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=5.3e-30 Score=266.42 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=176.8
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchhHHH
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (716)
+++|||||||++++++ .+.+.+++++|+.+++. +++|||||||+ +++.+.+ .+...++ ....+..++
T Consensus 37 ~~iVIKlGGs~l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~--~~~~~g~-----~~~~~~~~~ 103 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGT-RARHLYS--IAAGLGL-----PAGVLAQLG 103 (270)
T ss_dssp TEEEEEECTTTTGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCH-HHHHHHH--HHHHTTC-----CHHHHHHHH
T ss_pred CeEEEEechHHhCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChH-HHHHHHH--HHHhcCC-----ChHHHHHHH
Confidence 4999999999999753 46789999999999876 89999999998 5554322 1111111 112244568
Q ss_pred HHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCc-ee
Q 005047 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG-IF 173 (716)
Q Consensus 95 ~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~-~~ 173 (716)
+.++|+..++ +...|..+|++ .++..|+ +.++.+|+.|.|||++|++.+...... ...+. .+
T Consensus 104 ~~a~G~~~l~--~~~~l~~~G~~----~vt~~d~----------~~i~~lL~~g~ipVi~g~~g~~~~~~~-~~~g~~~~ 166 (270)
T 2ogx_B 104 SSVADQNAAM--LGQLLAKHGIP----VVGGAGL----------SAVPLSLAEVNAVVFSGMPPYKLWMRP-AAEGVIPP 166 (270)
T ss_dssp HHHHHHHHHH--HHHHHGGGTCC----BCCSSTT----------CHHHHHCTTCCEEEEECSCTTGGGCCC-CSSSSSCS
T ss_pred HHHHHHHHHH--HHHHHHhcCCc----eecHhhH----------HHHHHHHhCCCEEEEeCCccccccccc-cccccCCC
Confidence 8889988765 36777777765 2444443 248899999999999986544431100 01222 34
Q ss_pred ecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHc
Q 005047 174 WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA 252 (716)
Q Consensus 174 ~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~ 252 (716)
+|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+.++...+ ....|||.+|+++|. .
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g---~~~~ggm~~kl~aa~----~ 239 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD---SILEFPVLDLLQSAQ----H 239 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC---TTSCHHHHHHHHHCS----S
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC---CcccHHHHHHHHHhh----c
Confidence 999999999999999999999999999999999 59999999999999988765433 134589999999874 4
Q ss_pred CCcEEEeeCCCcchHHHHhcCCcceeEEec
Q 005047 253 GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (716)
Q Consensus 253 gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (716)
+++++|+|++.|+++.++++|+..||++.+
T Consensus 240 ~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 240 VREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp CCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 579999999999999999999999999874
No 80
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.97 E-value=2.1e-30 Score=265.57 Aligned_cols=225 Identities=18% Similarity=0.207 Sum_probs=162.3
Q ss_pred hhcccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhhcccCCcccccccc
Q 005047 10 FVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQ 87 (716)
Q Consensus 10 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~--~~~~~~~~~~~~~~~~~~~ 87 (716)
..++.|++|||||||++++++ ++.+.+.+++++|+.+++ |+++|||||||+.+... .+.. .+ ++...
T Consensus 15 ~~~~~k~iViKlGGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~-~g-------l~~~~ 83 (244)
T 2brx_A 15 PRGSHMRIVFDIGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK-FN-------SSETF 83 (244)
T ss_dssp ----CCEEEEEECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHT-TT-------CCHHH
T ss_pred hhhcccEEEEEechhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHH-cC-------CCccc
Confidence 446678999999999999764 677889999999999999 99999999997755442 1111 11 11110
Q ss_pred cchhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCC
Q 005047 88 NELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (716)
Q Consensus 88 ~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~ 167 (716)
+ ..+.+++...-..++...|..+|++. ++. +.+.+..+|+.|.|||++|
T Consensus 84 --~--~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~-------~~~~i~~lL~~g~IpVi~g------------ 132 (244)
T 2brx_A 84 --K--DFIGIQITRANAMLLIAALREKAYPV--------VVE-------DFWEAWKAVQLKKIPVMGG------------ 132 (244)
T ss_dssp --H--HHHHHHHHHHHHHHHHHHHGGGBCSS--------CBC-------SHHHHHHHHHTTCBCEECC------------
T ss_pred --H--HHHHHHHHHHHHHHHHHHHHHcCCCC--------CcC-------CHHHHHHHHhCCCEEEEcC------------
Confidence 1 11122222221223346777777532 111 2456789999999999985
Q ss_pred CCCceeecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHH
Q 005047 168 DSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAA 246 (716)
Q Consensus 168 ~~g~~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa 246 (716)
|.+++++|++|+++|.+|+||+|+|+|||||||++|| ++|++++|++|+++|+.+++..+ +..+|||.+|..+|
T Consensus 133 --g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~A 207 (244)
T 2brx_A 133 --THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPLA 207 (244)
T ss_dssp --CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHHH
T ss_pred --CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHHH
Confidence 1235789999999999999999999999999999999 58999999999999998876541 24578988887777
Q ss_pred HHHHH-cCCcEEEeeCCCcchHHHHhcCCcceeEEe
Q 005047 247 YCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (716)
Q Consensus 247 ~~a~~-~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (716)
..+++ .+++++|+||+.|+.+.++++|+..||++.
T Consensus 208 ~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 208 AKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp HHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred HHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 76655 678899999999999999999988999985
No 81
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=7.4e-30 Score=264.08 Aligned_cols=240 Identities=24% Similarity=0.282 Sum_probs=172.3
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhcccCCcc-cccccccc-h
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLA-DLQKPQNE-L 90 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~-~vvIVhGGg~~i~~~~~~~~~~~~~~~~-~~~~~~~~-l 90 (716)
++++|||||||+++++ +.+.+++++|+.+.+.|. ++|||||||+++++.+. . .+.++.+. +++.+..+ +
T Consensus 2 m~~~ViK~GGs~l~~~------~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~-~-~g~~~~~~~glr~t~~~~l 73 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSE------EALERLFSALVNYRESHQRPLVIVHGGGCVVDELMK-G-LNLPVKKKNGLRVTPADQI 73 (258)
T ss_dssp CCCEEEEECGGGGGCH------HHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHH-H-HTCCCCEETTEECBCHHHH
T ss_pred CccEEEEEChhHhCCh------HHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHH-H-cCCCcceeCCEeeCCHHHH
Confidence 5789999999999874 358999999999887765 58999999998777543 2 22222221 12222111 0
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccC----------Cchh-hHhHHHHHHHHHHhCCCeEEeeCCCce
Q 005047 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDF----------RDED-FRKQLYDTVQSLLDLRVIPIFNENDAV 159 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~----------~~~~-~~~~~~~~i~~ll~~g~iPV~~g~d~v 159 (716)
.-......|... ..+-..|...|+++..+...+.++ ...+ .+.++.+.|+.+|++|.|||++|++ +
T Consensus 74 ~~~~~~l~~~~n--~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g-~ 150 (258)
T 1gs5_A 74 DIITGALAGTAN--KTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG-V 150 (258)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE-E
T ss_pred HHHHHHHhccch--HHHHHHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCc-C
Confidence 000011112211 122245677887766553322211 1111 1224567899999999999999832 1
Q ss_pred ecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHHHHhcCCCCCcccCC
Q 005047 160 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (716)
Q Consensus 160 ~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~gg 238 (716)
+..|..+ +++|++|+++|.+|+|| |+|+|||||||++| +++|++|+++|+.+++.. ..++||
T Consensus 151 -------~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~----~~~~gG 213 (258)
T 1gs5_A 151 -------TDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQ----GIITDG 213 (258)
T ss_dssp -------CTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHT----TCSCTH
T ss_pred -------CCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhc----CCCCCc
Confidence 1245554 99999999999999999 99999999999986 689999999999987654 378999
Q ss_pred cHHHHHHHHHHHH-cCCcEEEeeCCCcchHHHHhcCCcceeEEe
Q 005047 239 MTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (716)
Q Consensus 239 M~~Kl~aa~~a~~-~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (716)
|.+|+++|..+++ .+++++|+|++.|+.+.++++|+..||++.
T Consensus 214 m~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 214 MIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 9999999999876 588899999999999999999998999985
No 82
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.96 E-value=1.3e-28 Score=275.68 Aligned_cols=258 Identities=17% Similarity=0.201 Sum_probs=182.9
Q ss_pred Hhhcc--cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccc
Q 005047 9 AFVKD--VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQK 85 (716)
Q Consensus 9 ~~~~~--~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~ 85 (716)
+.++. ++++|||+||+++++++ +..++++|+.+++.|+++|||||||++++..+.. .+..+.+.+ ++.
T Consensus 36 ~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~--~~~~~~~~~g~r~ 106 (456)
T 3d2m_A 36 PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAA--QGRTPHYCRGLRV 106 (456)
T ss_dssp HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTT--TTCCCCCGGGCCC
T ss_pred HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH--CCCCCEeeCCeec
Confidence 34444 67999999999998754 7899999999999999999999999998875432 233333322 222
Q ss_pred cc-cchhHHHHHHhchHHHHHHHHHHhccCCCcc-----------ceEEecC-------ccCCchhh-HhHHHHHHHHHH
Q 005047 86 PQ-NELDGKACAAVGQSSLMALYDTLFSQLDVTS-----------SQLLVTD-------SDFRDEDF-RKQLYDTVQSLL 145 (716)
Q Consensus 86 ~~-~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~-----------~~~~~~~-------~~~~~~~~-~~~~~~~i~~ll 145 (716)
+. ..+. ....++|+.... +...|. .|+++ .+++... .|++..+. ..++.+.|+.+|
T Consensus 107 t~~~~l~-~~~~~~G~~~~~--l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL 182 (456)
T 3d2m_A 107 TDETSLG-QAQQFAGTVRSR--FEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQL 182 (456)
T ss_dssp BCHHHHH-HHHHHHHHHHHH--HHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhHHHHH--HHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHH
Confidence 21 1111 122223665543 345665 55544 1222211 02222122 124578999999
Q ss_pred hCCCeEEeeCCCceecCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhchHH
Q 005047 146 DLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQA 224 (716)
Q Consensus 146 ~~g~iPV~~g~d~v~~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e~~~ 224 (716)
++|.|||++++ .. +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++| +++|++|+++|+.+
T Consensus 183 ~~g~ipIi~~~---~~-----~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~~-----~~~i~~i~~~e~~~ 249 (456)
T 3d2m_A 183 DAGNIVWMPPL---GH-----SYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPD-----GTLAETLSAQEAQS 249 (456)
T ss_dssp HTTCEEEECSE---EE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCTT-----SCBCSEEEHHHHHH
T ss_pred HCCCeEEECCc---cc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCCC-----CCccccCCHHHHHH
Confidence 99999999862 11 1245555 99999999999999999999999999999874 89999999999988
Q ss_pred HHhcCCCCCcccCCcHHHHHHHHHHHHcCCc-EEEeeCCCcchH-HHHhcCCcceeEEecCCc-ccc--chhhHHHHHH
Q 005047 225 EITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRDAH-LWV--KQVGAREMAV 298 (716)
Q Consensus 225 ~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~~~-~~~--~~~~v~~av~ 298 (716)
++..+ +|||.||+++|..|+++|++ ++|+|++.|+++ .++++++..||++.+..- .+. ..+|++...+
T Consensus 250 ~~~~g------~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~ 322 (456)
T 3d2m_A 250 LAEHA------ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAA 322 (456)
T ss_dssp HHTTC------CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHH
T ss_pred HHhcc------CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHH
Confidence 76543 39999999999999999997 999999999998 778888889999986531 111 3556655443
No 83
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.96 E-value=2.1e-28 Score=252.42 Aligned_cols=235 Identities=16% Similarity=0.195 Sum_probs=171.0
Q ss_pred hhcccCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccccccccc
Q 005047 10 FVKDVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (716)
Q Consensus 10 ~~~~~~~iVIKiGGs~l~~~~-~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (716)
+++..+++|||||||+++++. ..++.+.+.+++++|+.+.+.|+++|||||||..+....+.. .+.+.. ..+
T Consensus 8 ~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~-~g~~~~--~~~---- 80 (255)
T 2jjx_A 8 HMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEE-WGIDRV--EAD---- 80 (255)
T ss_dssp --CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-TTCCHH--HHH----
T ss_pred ccccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHH-cCCCCC--ChH----
Confidence 567889999999999999762 367888999999999999999999999999977553322211 111100 000
Q ss_pred chhHHHHHHhchHHHHHHHHHHhcc-CCCccceEEecCccCCch-hhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCC
Q 005047 89 ELDGKACAAVGQSSLMALYDTLFSQ-LDVTSSQLLVTDSDFRDE-DFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 166 (716)
Q Consensus 89 ~l~~~~~~a~g~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~~-~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~ 166 (716)
...++.+..+.. ++...|.. +|+++..+ +..++... ..+ +....+ .+|+.|.|||++| .
T Consensus 81 --~~~~~~~~~~~~---ll~~~l~~~~Gi~a~~l--~~~~~~~v~~~~-~~~~~~-~lL~~g~IpVi~g-----g----- 141 (255)
T 2jjx_A 81 --NIGTLGTIINSL---MLRGVLTSKTNKEVRVM--TSIPFNAVAEPY-IRLRAV-HHLDNGYIVIFGG-----G----- 141 (255)
T ss_dssp --HHHHHHHHHHHH---HHHHHHHHHCSSCEEEE--ESSCCCSSSEEC-CHHHHH-HHHHTTCEEEEES-----T-----
T ss_pred --HHhHHHHHHHHH---HHHHHHHhhcCCceEEe--cHHHcCcccCcc-cHHHHH-HHHhCCcEEEEeC-----C-----
Confidence 012333333322 24578888 99877533 21121100 011 223444 8999999999985 1
Q ss_pred CCCCceeecchHHHHHHHhhcCCCEEEEee-cCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHH
Q 005047 167 EDSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVN 244 (716)
Q Consensus 167 ~~~g~~~~~sD~~A~~lA~~L~Ad~Li~~T-DVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~ 244 (716)
.|..++++|++|+++|.+|+||+|+|+| ||||||++|| .+|++++|++|+++|+.+. ++++|.+ .
T Consensus 142 --~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---------G~~~m~~--~ 208 (255)
T 2jjx_A 142 --NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---------NIQVMDQ--A 208 (255)
T ss_dssp --TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---------TCCSSCH--H
T ss_pred --CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---------CCccCHH--H
Confidence 2233588899999999999999999999 9999999999 5999999999999887752 2578875 4
Q ss_pred HHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 245 AAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 245 aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
++..+.+.|++++|+|++.|+++.+.++|+..||++.++
T Consensus 209 a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 209 ALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp HHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred HHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 555566689999999999999999999998899999875
No 84
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.96 E-value=8.4e-29 Score=257.88 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=170.2
Q ss_pred hcccC-eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccc
Q 005047 11 VKDVK-RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNE 89 (716)
Q Consensus 11 ~~~~~-~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 89 (716)
+++++ ++||||||| +++++ .+.+.+++++|+.++ .|+++|||||||++. +..+.. +.+.+ +.
T Consensus 35 i~~~~~~iVIKiGGs-l~~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~-~~~~~~--~~~~g---l~----- 97 (276)
T 2ogx_A 35 IRLLPWLQVVKIGGR-VMDRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRA-RHVFSV--GLDLG---LP----- 97 (276)
T ss_dssp CCSSTTEEEEEECHH-HHTTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHH-HHHHHH--HHHTT---CC-----
T ss_pred hhhcCCeEEEEEChh-hcCCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHH-HHHHhc--cCcCC---CC-----
Confidence 44544 999999999 88753 457899999999998 799999999998654 444332 11111 11
Q ss_pred hhHHHHHHhchHH---HHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCC
Q 005047 90 LDGKACAAVGQSS---LMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 166 (716)
Q Consensus 90 l~~~~~~a~g~~~---~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~ 166 (716)
...+..+++.. -..+++.++...|++.. .+.++.+.|+.+|+.|.|||++|++.+...+
T Consensus 98 --~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v-------------~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e--- 159 (276)
T 2ogx_A 98 --VGSLAPLAASEAGQNGHILAAMLASEGVSYV-------------EHPTVADQLAIHLSATRAVVGSAFPPYHHHE--- 159 (276)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBC-------------CHHHHHHHHHHHHHHSSEEEEESSCTTGGGC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-------------cccChHHHHHHHHhCCCEEEEcCCccccccc---
Confidence 11222322221 11233444545554311 1223567899999999999999965554211
Q ss_pred CCCCc--eeecchHHHHHHHhhcCCCEEEEeecCCccccCCCc---ccccccccccchhchHHHHhcCCCCCcccCCcHH
Q 005047 167 EDSSG--IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS---EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 241 (716)
Q Consensus 167 ~~~g~--~~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~---~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~ 241 (716)
..|+ .++++|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++. ++|||.+
T Consensus 160 -~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~ 230 (276)
T 2ogx_A 160 -FPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDR 230 (276)
T ss_dssp -CSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCH
T ss_pred -ccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHH
Confidence 1122 349999999999999999999999999999999994 8999999999999887643 4899999
Q ss_pred HHHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 242 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 242 Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
|+.++..+.+.|++++|+||+.|+++.+.++|+..||++.+.
T Consensus 231 K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 231 ALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp HHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 999888877888899999999999999999998899999764
No 85
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.96 E-value=3e-29 Score=262.67 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=171.5
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc---cch
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NEL 90 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~---~~l 90 (716)
+++|||+||++++++ +.+++++|+.|+..|.++|||||||+++...+.+ .++++.|.+ ++.+. +..
T Consensus 49 ~~iViK~GGsv~~~~--------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~--~gi~~~~~~G~RvTd~~~l~v 118 (307)
T 3zzh_A 49 QFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEA--QGIEPDYIDGIRITDEHTMAV 118 (307)
T ss_dssp CCEEEEECHHHHHHS--------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHH--TTCCCCEETTEECBCHHHHHH
T ss_pred CEEEEEEChHHhhch--------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH--cCCCccccCCeecCCHHHHHH
Confidence 789999999988763 6899999999999999999999999999886532 445555544 33332 222
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCccceEE---ecCc-----cCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCceec
Q 005047 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVST 161 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~---~~~~-----~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~v~~ 161 (716)
.++ ++|+. ...+...|.+.|+++..+. ++.. |++..+. ..++.+.|+.+|++|+|||+++ +.+.
T Consensus 119 v~m---~~~~v--n~~lv~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~-~g~~- 191 (307)
T 3zzh_A 119 VRK---CFLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET- 191 (307)
T ss_dssp HHH---HHHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECC-CEEC-
T ss_pred HHH---HHHHH--HHHHHHHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeC-CeEC-
Confidence 222 23322 2223466777777665431 1111 2221111 2256789999999999999987 3322
Q ss_pred CCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhc-hHHHHhcCCCCCcccCCc
Q 005047 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGGM 239 (716)
Q Consensus 162 ~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e-~~~~~~~g~~~~~~~ggM 239 (716)
.+|..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|+++++.| +++++.. .+++|||
T Consensus 192 ------~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~----~~~tGGM 257 (307)
T 3zzh_A 192 ------ASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYGT 257 (307)
T ss_dssp ------TTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTS----TTSCHHH
T ss_pred ------CCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhC----CCCCCcH
Confidence 245555 9999999999999999999999999999986 3589999999976 5555543 3679999
Q ss_pred HHHHHHHHHHHH---cCCcEEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 240 TAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 240 ~~Kl~aa~~a~~---~gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
.|||+++..|++ .|.+++|+| ++++ .++++++..||.+.+.
T Consensus 258 ~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 258 KLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 999996555544 487899998 7887 7789999999999876
No 86
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.96 E-value=1.9e-28 Score=247.33 Aligned_cols=215 Identities=16% Similarity=0.167 Sum_probs=154.9
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhhcccCCcccccccccchhH
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDG 92 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 92 (716)
+++|||||||+++++ .+.+.+++++|+.+++ |+++|||||||+++... ..+. .+. +...+.. .
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~-~g~-------~~~~l~~-~ 65 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE-----SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARE-LGA-------SETFCDY-I 65 (219)
T ss_dssp CEEEEEECSSTTTTC-----HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHH-TTC-------CHHHHHH-H
T ss_pred CeEEEEeChhhhCCh-----HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHH-cCC-------CccchHH-H
Confidence 479999999999873 3468999999999999 99999999997766652 2221 111 1100000 0
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce
Q 005047 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (716)
Q Consensus 93 ~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~ 172 (716)
.++...++.. +++.++... + .+ +. .+.+.++.+|+.|.|||++| |.+
T Consensus 66 ~~~~~~~~~~---l~~~~~~~~-~--~~------~~-------~~~~~i~~ll~~g~ipVi~~--------------g~~ 112 (219)
T 2ij9_A 66 GIAATRLNAM---LLISAIPSA-A--KK------VP-------VDFMEAEELSKLYRVVVMGG--------------TFP 112 (219)
T ss_dssp HHHHHHHHHH---HHHHHCTTB-C--SS------CC-------SSHHHHHHHHTTCSEEEECC--------------CSS
T ss_pred HHHHHHHHHH---HHHHHHHHh-c--CC------Cc-------CCHHHHHHHHHCCCEEEEeC--------------CCC
Confidence 1222333322 233444322 1 11 11 13467899999999999985 123
Q ss_pred eecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHH-H
Q 005047 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA-A 250 (716)
Q Consensus 173 ~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a-~ 250 (716)
++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+.+++..+ +..+|||.+|..+|..+ .
T Consensus 113 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~---g~~~g~~~~~~~~a~~~~~ 189 (219)
T 2ij9_A 113 GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS---SAKAGTNVVIDLLAAKIIE 189 (219)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC--------CCCCCSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC---CCCCCCccchHHHHHHHHH
Confidence 5789999999999999999999999999999999 49999999999999998765431 24478877776666654 4
Q ss_pred HcCCcEEEeeCCCcchHHHHhcCCcceeEEe
Q 005047 251 CAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (716)
Q Consensus 251 ~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (716)
+.+++++|+|+ .|+++.++++|+..||++.
T Consensus 190 ~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 190 RSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 57889999999 9999999999988999873
No 87
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.95 E-value=2.1e-28 Score=269.45 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=176.0
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-cccc---ccch
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKP---QNEL 90 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~---~~~l 90 (716)
+++|||+||++++++ +.+++++|+.++..|.++|||||||+++...+.+ .++++.|.+ ++.+ ++..
T Consensus 59 ~~iViK~GGsv~~~~--------l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~--~gi~~~f~~G~RvTd~~~l~v 128 (460)
T 3s6g_A 59 RFAVIKVGGAVIQDD--------LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEA--ADIPTERVDGLRVTRDEAMPI 128 (460)
T ss_dssp GSEEEEECHHHHHHC--------HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHH--HSCCCCCCSSSCCBCTTTHHH
T ss_pred CEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHH--cCCCccccCCccCCCHHHHHH
Confidence 699999999977753 6899999999999999999999999999886532 445555543 3332 2222
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCccceEE----e----cCccCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCceec
Q 005047 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLL----V----TDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVST 161 (716)
Q Consensus 91 ~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~----~----~~~~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~v~~ 161 (716)
...++|+.. ..+-.+|.+.|+++..+. . +..|++..+. ..++.+.|+.+|+.|.|||+++. .
T Consensus 129 ---v~~~lg~vn--~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~---g- 199 (460)
T 3s6g_A 129 ---IRDTLTQAN--LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACL---G- 199 (460)
T ss_dssp ---HHHHHHHHH--HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECE---E-
T ss_pred ---HHHHHHHHH--HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECc---e-
Confidence 222334322 222246667777654331 1 1123332222 22567899999999999999861 1
Q ss_pred CCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchh-chHHHHhcCCCCCcccCCc
Q 005047 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGM 239 (716)
Q Consensus 162 ~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~-e~~~~~~~g~~~~~~~ggM 239 (716)
.+..|..+ +|+|++|+++|.+|+||+|+|+|||||||++| +++|++|+.. |+++++.. .+++|||
T Consensus 200 ----~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGGM 266 (460)
T 3s6g_A 200 ----ETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDED-----GDILSSINLATDFGDLMQA----DWVNGGM 266 (460)
T ss_dssp ----ECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCTT-----SSBCCEEEHHHHHHHHHHC----SSSCHHH
T ss_pred ----ECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCCC-----CeecceeCcHHHHHHHHhc----CCCCCcH
Confidence 12245555 99999999999999999999999999999864 7999999996 77766653 3789999
Q ss_pred HHHHHHHHHHHHcCCcEEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 240 TAKVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 240 ~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
.+||++|..+++.+.+++|++++.|++| .++++++.+||++.+.
T Consensus 267 ~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 267 RLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 9999999998884335999999999998 5789999999999876
No 88
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.95 E-value=1e-27 Score=263.16 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=172.0
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc---cc
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NE 89 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~---~~ 89 (716)
.+++|||+||++++++ +.+++++|+.|+..|.++|||||||+++...+. ..++++.|.+ ++.+. |.
T Consensus 48 ~~~iVIK~GGsv~~~~--------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~f~~G~RvTd~~tl~ 117 (464)
T 4ab7_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLE--AQGIEPDYIDGIRITDEHTMA 117 (464)
T ss_dssp -CCEEEEECHHHHHHC--------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHH--HTTCCCCEETTEECBCHHHHH
T ss_pred CceEEEEECHHHhhch--------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHH--HcCCCccccCCeecCCHHHHH
Confidence 3689999999998763 689999999999999999999999999998653 2455555544 33332 22
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCccceE----EecC----ccCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCcee
Q 005047 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQL----LVTD----SDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 160 (716)
Q Consensus 90 l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~----~~~~----~~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~v~ 160 (716)
..+++ +|+. ...+...|.+.|+++..+ +... .|++..+. ..++.+.|+.+|+.|.|||+++ +.+
T Consensus 118 vv~mv---~~~v--n~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~-~g~- 190 (464)
T 4ab7_A 118 VVRKC---FLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAE- 190 (464)
T ss_dssp HHHHH---HHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEES-EEE-
T ss_pred HHHHH---HHHH--HHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcC-CcC-
Confidence 22222 2322 223446677777765543 1111 12322222 2256789999999999999997 222
Q ss_pred cCCCCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchhc-hHHHHhcCCCCCcccCC
Q 005047 161 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGG 238 (716)
Q Consensus 161 ~~~~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~e-~~~~~~~g~~~~~~~gg 238 (716)
+..|..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++|+++| +++++.. ..++||
T Consensus 191 ------~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~----~~~tgG 256 (464)
T 4ab7_A 191 ------TASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYG 256 (464)
T ss_dssp ------CTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTC----SSCCHH
T ss_pred ------CCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhc----CCCCCc
Confidence 2245555 9999999999999999999999999999987 3589999999976 5555543 478999
Q ss_pred cHHHHHHHHHHHHc---CCcEEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 239 MTAKVNAAYCAACA---GIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 239 M~~Kl~aa~~a~~~---gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
|.|||+++..|++. |.+++|++ ++++ .++++++.+||.+...
T Consensus 257 M~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 257 TKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 99999966666553 76799998 6776 6788999999999877
No 89
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.95 E-value=4.3e-27 Score=259.72 Aligned_cols=232 Identities=20% Similarity=0.233 Sum_probs=165.6
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchhHH
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (716)
|+++|+||||+++.+. +.+.+++++|+.+++.|+++||||||++..++.+++......... .. -..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-~~------~~~d 67 (421)
T 3ab4_A 1 MALVVQKYGGSSLESA------ERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-PA------REMD 67 (421)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-CH------HHHH
T ss_pred CCeEEEEEChhHhCCH------HHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-CH------HHHH
Confidence 4789999999999863 468999999999999999999999866656666555432211111 10 1124
Q ss_pred HHHHhchHHHHHHHHHHhccCCCcc-----ceE-EecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCC
Q 005047 94 ACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (716)
Q Consensus 94 ~~~a~g~~~~~~~~~~~l~~~gi~~-----~~~-~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~ 167 (716)
.+.+.|+.....++...|..+|+++ .++ ++++..+........+.+.|+.+|+.|.|||++|...+.
T Consensus 68 ~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~------- 140 (421)
T 3ab4_A 68 MLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVN------- 140 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcC-------
Confidence 6668898777777889999999876 343 334333432222223467899999999999998721111
Q ss_pred CC-Ccee----ecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHH
Q 005047 168 DS-SGIF----WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 241 (716)
Q Consensus 168 ~~-g~~~----~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~ 241 (716)
.+ |... +++|++|+++|.+|+||+|+++|||||||++|| .+|++++|++|+++|+.++...| .+..
T Consensus 141 ~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G--------a~v~ 212 (421)
T 3ab4_A 141 KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG--------SKIL 212 (421)
T ss_dssp -----------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT--------CCSS
T ss_pred CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC--------CcCc
Confidence 13 3322 599999999999999999999999999999999 48999999999999999887643 3456
Q ss_pred HHHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 242 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 242 Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
|++++..|+++|||++|.|++.| ..||++...
T Consensus 213 ~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 213 VLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp CHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred hHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 78899999999999999999876 469999765
No 90
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.4e-28 Score=265.77 Aligned_cols=239 Identities=19% Similarity=0.156 Sum_probs=171.2
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCccc-ccccc---cch
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NEL 90 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~-~~~~~---~~l 90 (716)
+++|||+||++++++ +.+++++|+.+++.|.++|||||||++++..+.+ .++++.|.+ ++.+. +..
T Consensus 62 ~~iViK~GG~v~~~~--------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~--~gi~~~f~~G~RvTd~~~l~v 131 (467)
T 3s6k_A 62 RFAVVKVGGAVLRDD--------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSA--AGIEKQTVNGLRVTSPHALAI 131 (467)
T ss_dssp TSCCCCCCHHHHTTC--------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHT--TSCCCCCCSSSCCBCHHHHHH
T ss_pred cEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHH--cCCCccccCCccCCCHHHHHH
Confidence 689999999977643 5899999999999999999999999998886532 445555543 33322 222
Q ss_pred hHHHHHHhchHH---HHHHHHHHhccCCCccceEE---ecCccCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCceecCC
Q 005047 91 DGKACAAVGQSS---LMALYDTLFSQLDVTSSQLL---VTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (716)
Q Consensus 91 ~~~~~~a~g~~~---~~~~~~~~l~~~gi~~~~~~---~~~~~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~ 163 (716)
.+ .++|+.. +..+.+..+.+.++....+. ++..+++..+. ..++.+.|+.+|+.|.|||++++
T Consensus 132 v~---~~~g~vn~~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pv------- 201 (467)
T 3s6k_A 132 VR---KVFQASNLKLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSL------- 201 (467)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSC-------
T ss_pred HH---HHHHHHHHHHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECc-------
Confidence 12 2233222 12222333333343332221 11223332222 23567899999999999999841
Q ss_pred CCCCCCCcee-ecchHHHHHHHhhcCCCEEEEeecCCccccCCCcccccccccccchh-chHHHHhcCCCCCcccCCcHH
Q 005047 164 APYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTA 241 (716)
Q Consensus 164 ~~~~~~g~~~-~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP~~p~a~~i~~is~~-e~~~~~~~g~~~~~~~ggM~~ 241 (716)
+++..|..+ +|+|++|+++|.+|+||+|+|+|||||||++| +++|++|+.. |+++++.. .+++|||.+
T Consensus 202 -g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGGM~~ 271 (467)
T 3s6k_A 202 -GETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE-----GKLIDSINLSTEYDHLMQQ----PWINGGMRV 271 (467)
T ss_dssp -CCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----CCCCCCCCTTTTTHHHHTS----SSCCSHHHH
T ss_pred -eECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----CCCccccChHHHHHHHHhc----CCCCCchHH
Confidence 122245454 99999999999999999999999999999864 7999999986 77766543 378999999
Q ss_pred HHHHHHHHHHcCCcEEEeeCCCcchH-HHHhcCCcceeEEecC
Q 005047 242 KVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (716)
Q Consensus 242 Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (716)
||++|..+++.+.+++|++++.|+++ .++++++.+||++.+.
T Consensus 272 Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 272 KIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred HHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 99999988875445999999999998 5789999999998876
No 91
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.93 E-value=2.2e-25 Score=255.04 Aligned_cols=232 Identities=19% Similarity=0.219 Sum_probs=170.6
Q ss_pred cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccCCcccccccccchhHH
Q 005047 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (716)
Q Consensus 14 ~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (716)
|+++|+||||+++.+. +.+.+++++|+.+++.|+++||||||.+..++.+++.......++. . -..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~-~------~~~d 67 (600)
T 3l76_A 1 MALIVQKFGGTSVGTV------ERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPC-R------REMD 67 (600)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCC-H------HHHH
T ss_pred CceEEEEeCCCCcCCH------HHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCC-H------HHHH
Confidence 4789999999999874 4689999999999999999999999944345444432221111110 0 1125
Q ss_pred HHHHhchHHHHHHHHHHhccCCCccc-----eE-EecCccCCchhhHhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCC
Q 005047 94 ACAAVGQSSLMALYDTLFSQLDVTSS-----QL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (716)
Q Consensus 94 ~~~a~g~~~~~~~~~~~l~~~gi~~~-----~~-~~~~~~~~~~~~~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~ 167 (716)
++.++|+..+..++..+|..+|+++. ++ ++++..+........+.+.+..+|+.|.|||++|.- ++.
T Consensus 68 ~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~-------g~~ 140 (600)
T 3l76_A 68 MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQ-------GIS 140 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEE-------EC-
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCe-------ecC
Confidence 78899998888899999999998843 33 233332322111112236788999999999998711 111
Q ss_pred CCCce------eecchHHHHHHHhhcCCCEEEEeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcH
Q 005047 168 DSSGI------FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMT 240 (716)
Q Consensus 168 ~~g~~------~~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~ 240 (716)
.+|.. ++++|++|+++|.+|+||+|+++|||||||++|| .+|++++|++|+++|+.++.. .+.++|.
T Consensus 141 ~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~------~G~~vm~ 214 (600)
T 3l76_A 141 SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELAS------LGAKVLH 214 (600)
T ss_dssp ---CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGG------GGTTTCC
T ss_pred CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHh------CCCCccH
Confidence 12211 2568999999999999999999999999999999 599999999999999998765 3479999
Q ss_pred HHHHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 241 AKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 241 ~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
| +++..|.++|||++|.|++.+ ..||++...
T Consensus 215 p--~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 215 P--RAVEIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp H--HHHHHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred H--HHHHHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 9 899999999999999998763 368988765
No 92
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.90 E-value=9e-23 Score=228.00 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=175.9
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhcccC--Ccc-------cc--
Q 005047 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNS--SLA-------DL-- 83 (716)
Q Consensus 16 ~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~-~vvIVhGGg~~i~~~~~~~~~~~~~--~~~-------~~-- 83 (716)
++|.||||+++.+. ++++++++.|... ..|. ++|+|+++.+.++..++........ ... .+
T Consensus 2 ~~V~KFGGtSv~~~------~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (473)
T 3c1m_A 2 TTVMKFGGTSVGSG------ERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIRE 74 (473)
T ss_dssp CEEEEECTTTTSSH------HHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCH------HHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 68999999999874 4688888888765 6788 9999999988777766543221110 000 00
Q ss_pred ---------------cc-----cc-------------------cchhHHHHHHhchHHHHHHHHHHhccCCCccc-----
Q 005047 84 ---------------QK-----PQ-------------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSS----- 119 (716)
Q Consensus 84 ---------------~~-----~~-------------------~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~----- 119 (716)
+. .. ..-..+.+.++|+.....++...|...|+++.
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~ 154 (473)
T 3c1m_A 75 KHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGG 154 (473)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEch
Confidence 00 00 00012455667777777778889999998764
Q ss_pred eE-EecCccCCchhh-HhHHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce----eecchHHHHHHHhhcCCCEEE
Q 005047 120 QL-LVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLV 193 (716)
Q Consensus 120 ~~-~~~~~~~~~~~~-~~~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~----~~~sD~~A~~lA~~L~Ad~Li 193 (716)
++ ++++.+++.... ...+.+.++.+|+.|+|||++|.-.+.. +|.. ++++|++|+++|.+|+||+|+
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~-------~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~ 227 (473)
T 3c1m_A 155 EAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTE-------EGYITTLGRGGSDYSAALIGYGLDADIIE 227 (473)
T ss_dssp HHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEET-------TSCEEECCTTTHHHHHHHHHHHTTCSEEE
T ss_pred heeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCC-------CCCEEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 33 556556554333 3456789999999999999987222211 2322 169999999999999999999
Q ss_pred EeecCCccccCCCc-ccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCCcEEEeeCCCcchHHHHhc
Q 005047 194 LLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 272 (716)
Q Consensus 194 ~~TDVdGVy~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~t 272 (716)
++|||||||++||+ +|++++|++++++|+.++...| .+||.|| ++..|.++|++++|+|++.|+
T Consensus 228 i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g------~~~m~~~--a~~~a~~~gi~v~I~~~~~~~------- 292 (473)
T 3c1m_A 228 IWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG------AKVLHPR--TIEPAMEKGIPILVKNTFEPE------- 292 (473)
T ss_dssp EEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT------CTTSCGG--GHHHHHHHTCCEEEEETTSTT-------
T ss_pred EeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC------CcchHHH--HHHHHHHcCCEEEEEecCCCC-------
Confidence 99999999999994 8999999999999999877644 5799996 888899999999999999875
Q ss_pred CCcceeEEecC
Q 005047 273 GKRVGTLFHRD 283 (716)
Q Consensus 273 g~~iGT~i~~~ 283 (716)
..||++...
T Consensus 293 --~~GT~i~~~ 301 (473)
T 3c1m_A 293 --SEGTLITND 301 (473)
T ss_dssp --SCCEEEESC
T ss_pred --CceEEEecc
Confidence 579999865
No 93
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.88 E-value=2.1e-22 Score=222.87 Aligned_cols=234 Identities=19% Similarity=0.184 Sum_probs=168.4
Q ss_pred ccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccC-C----cccc----
Q 005047 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNS-S----LADL---- 83 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~-~----~~~~---- 83 (716)
|++++|.||||+++.+. ++++++++.|.. ...++|+|+|+.+.++..++........ . +..+
T Consensus 1 mm~~~V~KFGGTSv~~~------e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~ 71 (449)
T 2j0w_A 1 MSEIVVSKFGGTSVADF------DAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQ 71 (449)
T ss_dssp --CCEEEEECSGGGSSH------HHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCccCCCH------HHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 46789999999999874 357777777743 3448999999988888766553322000 0 0000
Q ss_pred ----ccc---------------------------ccchhHHHHHHhchHHHHHHHHHHhccCCCcc-----ceEEecCcc
Q 005047 84 ----QKP---------------------------QNELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQLLVTDSD 127 (716)
Q Consensus 84 ----~~~---------------------------~~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~-----~~~~~~~~~ 127 (716)
+.+ ...-..+.+.++|+..+..++...|..+|+++ .++++++++
T Consensus 72 ~~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~ 151 (449)
T 2j0w_A 72 FAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDR 151 (449)
T ss_dssp HHHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCC
Confidence 000 00112368889999999999999999999887 566666666
Q ss_pred CCchhhHh-----HHHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCcee----ecchHHHHHHHhhcCCCEEEEeecC
Q 005047 128 FRDEDFRK-----QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF----WDNDSLAGLLALELKADLLVLLSDV 198 (716)
Q Consensus 128 ~~~~~~~~-----~~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~~----~~sD~~A~~lA~~L~Ad~Li~~TDV 198 (716)
|.....+. +..+.++.|++.+ |||++|.-++. .+|... +++|++|+++|.+|+||+|+++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~-------~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDV 223 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLLPRLNEG-LVITQGFIGSE-------NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDV 223 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEEC-------TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCCccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeC-------CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEcccc
Confidence 65433321 2245667777666 99998721111 133332 5599999999999999999999999
Q ss_pred CccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHH---HHHHHHHHcCCcEEEeeCCCcchHHHHhcCC
Q 005047 199 EGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV---NAAYCAACAGIPVVITSGFAMDSIIKVLEGK 274 (716)
Q Consensus 199 dGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl---~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~ 274 (716)
||||++|| .+|++++|++|+++|+.++...| +|+ +++..|.++|++++|+|++.|+
T Consensus 224 dGv~~~DPr~~~~a~~i~~is~~e~~ela~~G-----------~kvlh~~a~~~a~~~gi~v~I~~~~~p~--------- 283 (449)
T 2j0w_A 224 PGIYTTDPRVVSAAKRIDEIAFAEAAEMATFG-----------AKVLHPATLLPAVRSDIPVFVGSSKDPR--------- 283 (449)
T ss_dssp SSEESSCTTTCTTCCEESEEEHHHHHHHHHTT-----------CTTSCTTTHHHHHHHTCCEEEEESSCTT---------
T ss_pred CCcCcCCCCCCCCCEEccCccHHHHHHHHhcC-----------CccchHHHHHHHHHCCCeEEEEECCCCC---------
Confidence 99999999 48999999999999999876543 356 7888899999999999999875
Q ss_pred cceeEEecC
Q 005047 275 RVGTLFHRD 283 (716)
Q Consensus 275 ~iGT~i~~~ 283 (716)
..||++...
T Consensus 284 ~~GT~I~~~ 292 (449)
T 2j0w_A 284 AGGTLVCNK 292 (449)
T ss_dssp SCCEEEESC
T ss_pred CCeeEEecc
Confidence 579999865
No 94
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.88 E-value=1.1e-21 Score=219.51 Aligned_cols=240 Identities=14% Similarity=0.149 Sum_probs=171.5
Q ss_pred ccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhcccC------Ccc----c
Q 005047 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNS------SLA----D 82 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~i~~~~~~~~~~~~~------~~~----~ 82 (716)
+++++|.||||+++.+. +++.++++.|... .+.++|+|+++.+.++..+++....... ... .
T Consensus 25 ~~~~~V~KFGGTSva~~------e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~ 96 (510)
T 2cdq_A 25 KGITCVMKFGGSSVASA------ERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSI 96 (510)
T ss_dssp CCCCEEEEECTGGGSSH------HHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHH
T ss_pred CCCeEEEEECCcccCCH------HHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHH
Confidence 45789999999999874 3678888877532 3568899999987777766543221100 000 0
Q ss_pred c-------------------------ccc------cc---chhHHHHHHhchHHHHHHHHHHhccCCCcc-----ceE-E
Q 005047 83 L-------------------------QKP------QN---ELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQL-L 122 (716)
Q Consensus 83 ~-------------------------~~~------~~---~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~-----~~~-~ 122 (716)
+ ... .. .-..+.+.++|+..+..++...|...|+++ .++ +
T Consensus 97 i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l 176 (510)
T 2cdq_A 97 IKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGF 176 (510)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeE
Confidence 0 000 00 012257889999998888999999999874 344 5
Q ss_pred ecCccCCchh----hHhHHHHHHHH-HHhCCCeEEeeCCCceecCCCCCCCCCce----eecchHHHHHHHhhcCCCEEE
Q 005047 123 VTDSDFRDED----FRKQLYDTVQS-LLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLV 193 (716)
Q Consensus 123 ~~~~~~~~~~----~~~~~~~~i~~-ll~~g~iPV~~g~d~v~~~~~~~~~~g~~----~~~sD~~A~~lA~~L~Ad~Li 193 (716)
++++++.... .+.+..+.+.. |++.|.|||++|+-+... .+|.. ++++|+.|+++|.+|+||.|+
T Consensus 177 ~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~------~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~ 250 (510)
T 2cdq_A 177 ITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGW------KTGAVTTLGRGGSDLTATTIGKALGLKEIQ 250 (510)
T ss_dssp EECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEET------TTCCEEECCTTHHHHHHHHHHHHHTCSEEE
T ss_pred EEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCC------CCCceEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 5655655432 22233455554 789999999987211111 01222 156999999999999999999
Q ss_pred EeecCCccccCCC-cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCCcEEEeeCCCcchHHHHhc
Q 005047 194 LLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 272 (716)
Q Consensus 194 ~~TDVdGVy~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~t 272 (716)
++|||||||++|| .+|++++|++|+++|+.++... +.++|.|| ++..|.++|||++|.|++.|+
T Consensus 251 i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~------Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~------- 315 (510)
T 2cdq_A 251 VWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYF------GAQVLHPQ--SMRPAREGEIPVRVKNSYNPK------- 315 (510)
T ss_dssp EEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHH------HSSCCCHH--HHHHHHHHTCCEEEEETTSTT-------
T ss_pred EEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhc------CcchhHHH--HHHHHHHCCCeEEEEccCcCC-------
Confidence 9999999999999 5899999999999999887653 46789874 888899999999999998875
Q ss_pred CCcceeEEecC
Q 005047 273 GKRVGTLFHRD 283 (716)
Q Consensus 273 g~~iGT~i~~~ 283 (716)
..||++...
T Consensus 316 --~~GT~I~~~ 324 (510)
T 2cdq_A 316 --APGTIITKT 324 (510)
T ss_dssp --SCCEEEESC
T ss_pred --CCCeEEecc
Confidence 479998765
No 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.87 E-value=4.6e-22 Score=219.06 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=168.0
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhH-------hhHHHhhhhhcccC--Cccc---
Q 005047 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVG-------VGRQRLRYRKLVNS--SLAD--- 82 (716)
Q Consensus 15 ~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGGg~~-------i~~~~~~~~~~~~~--~~~~--- 82 (716)
+|+|.||||+++.+. ++++++++.|.. .+.++++|+++.+. ++..++........ .+..
T Consensus 3 ~m~V~KFGGtSva~~------e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~~ 73 (446)
T 3tvi_A 3 KIVVTKFGGSSLADS------NQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFK 73 (446)
T ss_dssp -CEEEEECGGGGSSH------HHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccEEEEeCccccCCH------HHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHHH
Confidence 478999999999874 357777777763 46789999998662 66655443321110 0000
Q ss_pred -ccccc-------------------------cchhHHHHHHhchHHHHHHHHHHhccCCCccceEEecCccCCchhhHhH
Q 005047 83 -LQKPQ-------------------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQ 136 (716)
Q Consensus 83 -~~~~~-------------------------~~l~~~~~~a~g~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 136 (716)
+.... ..-..+.+.+.|+..+..++..+|.+..+++.++.+++. ........
T Consensus 74 ~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~--~~~~~~~~ 151 (446)
T 3tvi_A 74 LISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDK--SGCFDEKK 151 (446)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC----CBCHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCC--CCceehHh
Confidence 00000 000235677999999888999999888888888766543 22222334
Q ss_pred HHHHHHHHHhCCCeEEeeCCCceecCCCCCCCCCce--e--ecchHHHHHHHhhcCCCEEEEeecCCccccCCC-ccccc
Q 005047 137 LYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI--F--WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNS 211 (716)
Q Consensus 137 ~~~~i~~ll~~g~iPV~~g~d~v~~~~~~~~~~g~~--~--~~sD~~A~~lA~~L~Ad~Li~~TDVdGVy~~dP-~~p~a 211 (716)
..+.+..+|+.|.|||++|.-+... +|.. + +++|++|+++|.+|+||+|+++|||||||++|| .+|++
T Consensus 152 ~~~~l~~~l~~~~v~Vv~Gf~g~~~-------~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a 224 (446)
T 3tvi_A 152 SYEKIKEKVLSCNKAVIPGFYGSSF-------NGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENP 224 (446)
T ss_dssp HHHHHHHHTTTCSSEECCCSEEECT-------TSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSC
T ss_pred hHHHHHHHHhcCCeEEeeCceecCC-------CCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCC
Confidence 5788999999999999987211111 2222 2 679999999999999999999999999999999 59999
Q ss_pred ccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCCcEEEeeCCCcchHHHHhcCCcceeEEecC
Q 005047 212 KLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (716)
Q Consensus 212 ~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (716)
++|++|+++|+.++...| .++| |.+++..|.++|||++|.|++.|+ ..||++...
T Consensus 225 ~~i~~is~~e~~ela~~G------a~vl--~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 225 KTISKISYKELRELSYMG------ATVL--HEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp CBCSEEEHHHHHHTTTC----------C--CSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred eEcceeCHHHHHHHHhCC------CCcc--hHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 999999999999876543 4566 558999999999999999998774 469999876
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=96.93 E-value=0.58 Score=49.93 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCeEEEEeecceeEEEEEcCC----CchhHHHHHHHHHHhCCE--EEEeCC
Q 005047 363 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 436 (716)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~----~P~~~~~~~~~ALaaGNt--vv~Kps 436 (716)
-++..++.++.|.....+..... ...+|.....++.|+--|++-.|- ||...+..+.||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 35555666666643211111111 113466667788999999999992 565566778899999986 555565
Q ss_pred cc---hHHHHHHHHHHHHHhcccccCcCceEEec-CCchHHHhhc----CCCCccEEEeecCHHHHHHHHHhcCC-CEEE
Q 005047 437 KE---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKLVSQIKESTKI-PVLG 507 (716)
Q Consensus 437 ~~---tp~t~~~l~~l~~~al~~alP~gvv~vv~-~~~~~~~~l~----~~~~v~~v~fTGs~~~g~~i~~~a~~-~~~l 507 (716)
+. .|.+ +..++++ |+=.+.. |+...-++|. +=|+||+|+=-|..=+..+=..-.+. -+=+
T Consensus 170 ~~G~i~p~i-L~AA~l~----------Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~VgIDm 238 (423)
T 4gic_A 170 PRGELNALV-LAAAYIS----------GVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQVGIDM 238 (423)
T ss_dssp GGGCCCHHH-HHHHHHH----------TCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTTBEECC
T ss_pred CCCCccHHH-HHHHHhc----------CCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCCcCccc
Confidence 43 2322 1222322 5555655 5533222222 24789999988876543211111121 1111
Q ss_pred ecCCcce--EEEcCCCCHHHHHHHHHHhcCCCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCcccccccc
Q 005047 508 HADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ 585 (716)
Q Consensus 508 ElGGk~p--~iV~~dADl~~Aa~~iv~~~f~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~p 585 (716)
. -|-+= +|-|++||.+..+..++.-+=+... . .-++|..+ .+|.+++.+++++.-..+ ++
T Consensus 239 ~-AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a-~~iLvT~s---~~la~~V~~~i~~~l~~l---~r------ 300 (423)
T 4gic_A 239 V-AGPSEILVISDGRTDPDWIAMDLFSQAEHDED----A-QAILISPD---AAHLEAVQASIERLLPGM---ER------ 300 (423)
T ss_dssp C-CCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----C-EEEEEESC---HHHHHHHHHHHHHHGGGC---TT------
T ss_pred c-cccceEEEEeCCCCCHHHHHHHHHHhhccCCC----C-eEEEEeCc---HHHHHHHHHHHHHHHhhC---cc------
Confidence 1 23222 3345669999988887765433221 1 23555544 466666666665431000 11
Q ss_pred CCCCccccc--cccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEccCHHHHHHHHHccC-cceEEEcCCcCC--C----
Q 005047 586 IPETRLFHH--EYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVD-SAAVFHNASTRF--C---- 656 (716)
Q Consensus 586 v~~~~~~~e--E~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~a~~~~~~~~-~G~v~vN~~~~~--~---- 656 (716)
.++.++ +-+| .++-++|++||++++|..-- =-.-|.++|.. .+..+++ +|.|++-..++- .
T Consensus 301 ---~~i~~~sl~~~g---~ii~v~~~~ea~~~~N~~AP-EHLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~a 370 (423)
T 4gic_A 301 ---AEVIRTSLERRG---GMILVDDLEQAAAVANRIAP-EHLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCA 370 (423)
T ss_dssp ---HHHHHHHHHHHC---EEEECSSHHHHHHHHHHHCC-SEEEEESSCHH---HHGGGCCCCSEEEEC------------
T ss_pred ---HHHHHHHHhcCc---eEEEEeehHHHHHHHHhhCh-HHhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCc
Confidence 112111 1133 45678999999999999763 35678899975 4666665 999999865432 1
Q ss_pred -CCCcccCcceeeccccccccccccchhcccEEEEEE
Q 005047 657 -DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 692 (716)
Q Consensus 657 -~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~~k~v~ 692 (716)
++.-++. +|.. +..+.-++..|...-++.
T Consensus 371 G~NHvLPT---~G~A----r~~sgLsv~~F~K~~s~~ 400 (423)
T 4gic_A 371 GPNHVLPT---SGTA----RFSSPLGVYDFQKRSSLI 400 (423)
T ss_dssp ----CCCC---TTGG----GTCCCCCGGGGEEEEEEE
T ss_pred CCCccCCC---CCcc----cccCCCCHHHeeeeeeEE
Confidence 1111111 1211 234667888898776653
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=93.98 E-value=7.8 Score=41.43 Aligned_cols=258 Identities=11% Similarity=0.106 Sum_probs=146.6
Q ss_pred CCeEEEEeecceeEEEEEcCC----CchhHHHHHHHHHHhCCE--EEEeCCcchHHHHHHHHHHHHHhcccccCcCceEE
Q 005047 392 DGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGL 465 (716)
Q Consensus 392 ~~~~~~~~~~PlGVv~~I~p~----~P~~~~~~~~~ALaaGNt--vv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~v 465 (716)
.|.....++.|+--|++-.|. ||...+..+.||-.||+. |+.-|..-.|.+- ..+++ .|+=.+
T Consensus 113 ~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp~i~p~iL-~AA~l----------~Gv~eI 181 (434)
T 1kae_A 113 PGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEIL-YAAQL----------CGVQDV 181 (434)
T ss_dssp TTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECSSCCHHHH-HHHHH----------TTCCEE
T ss_pred CCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCCCCCHHHH-HHHHH----------cCCCEE
Confidence 366677788999999999993 565566777899999985 4455653344331 11222 244455
Q ss_pred ec-CCchHHHhhc----CCCCccEEEeecCHHH--HHHHHHh-cCCCEEEecCCcce--EEEcCCCCHHHHHHHHHHhcC
Q 005047 466 VT-SREEIPDLLK----LDDVIDLVIPRGSNKL--VSQIKES-TKIPVLGHADGICH--VYVDKSANLDVAKNIVIDAKI 535 (716)
Q Consensus 466 v~-~~~~~~~~l~----~~~~v~~v~fTGs~~~--g~~i~~~-a~~~~~lElGGk~p--~iV~~dADl~~Aa~~iv~~~f 535 (716)
.. |+...-++|. +=|+||+|+=-|..=+ +|+.... .+.--+=-.-|-+= +|-|++||.+..+..++.-+=
T Consensus 182 y~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm~AGPSEilViAD~tAnp~~vAaDLLsQAE 261 (434)
T 1kae_A 182 FNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAE 261 (434)
T ss_dssp EECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESCCCCCCEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCCCCCCceEEEEeCCCCCHHHHHHHHHHHhc
Confidence 54 5433222222 3478999987777643 4444311 11100111123222 344667999998887776543
Q ss_pred CCCCccccccceEEEeCccCChhhHHHHHHHHHhcCCEEecCccccccccCCCCccccccccCceEEEEEeCCHHHHHHH
Q 005047 536 DYPAACNAMVETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 615 (716)
Q Consensus 536 ~n~g~C~a~~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 615 (716)
+... . +-++|..+ .+|.+++.+++++.-..+ ++ ..+. ++-+..- .|+-++|+|||+++
T Consensus 262 Hd~~----a-~aiLvT~s---~~la~~V~~ev~~ql~~l---pr---------~~ia-~~sl~~~-~ii~v~~l~ea~~~ 319 (434)
T 1kae_A 262 HGPD----S-QVILLTPA---ADMARRVAEAVERQLAEL---PR---------AETA-RQALNAS-RLIVTKDLAQCVEI 319 (434)
T ss_dssp TCTT----C-EEEEEESC---HHHHHHHHHHHHHHHTTC---TT---------HHHH-HHHHTTC-EEEECSSHHHHHHH
T ss_pred cCCC----C-cEEEEECC---HHHHHHHHHHHHHHHHhC---Ch---------HHHH-HHHHHcC-eEEEECCHHHHHHH
Confidence 3221 1 23455443 356666666555420000 11 1121 2223444 68889999999999
Q ss_pred HHhcCCCceeEEEccCHHHHHHHHHc-cCcceEEEcCCcCC-------CCCCcccCcceeeccccccccccccchhcccE
Q 005047 616 IHQHGSAHTDCIVAEDQKVAETFLCQ-VDSAAVFHNASTRF-------CDGARFGLGAEVGISTSRIHARGPVGVEGLLT 687 (716)
Q Consensus 616 aN~~~~GL~a~i~t~d~~~a~~~~~~-~~~G~v~vN~~~~~-------~~~~p~g~g~~sG~~~~~~~~~g~~gl~~ft~ 687 (716)
+|..-. =-.-|.++|... +..+ -.+|.|++-..++- .++.-++-+ |.. +..+.-+++.|..
T Consensus 320 ~N~~AP-EHLel~~~dp~~---~l~~I~nAGaIFlG~~tpe~~GDY~aG~NHvLPT~---G~A----R~~sgLsV~~F~K 388 (434)
T 1kae_A 320 SNQYGP-EHLIIQTRNARE---LVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTY---GYT----ATCSSLGLADFQK 388 (434)
T ss_dssp HHHHCC-SEEEEESTTHHH---HGGGCCSCSEEEESTTCCHHHHHHTSSSCCCCCCT---TGG----GTCCCSCGGGGEE
T ss_pred HHHhhh-HhhhhhhcCHHH---HHhhcCcccchhcCCCCchhhcccccCCCcccCCC---Cce----eccCCCcHHhccc
Confidence 999763 356788999854 4444 56899999976531 122112221 221 2246678889988
Q ss_pred EEEEEE
Q 005047 688 TRWILR 693 (716)
Q Consensus 688 ~k~v~~ 693 (716)
.-++..
T Consensus 389 ~~s~~~ 394 (434)
T 1kae_A 389 RMTVQE 394 (434)
T ss_dssp EEEEEE
T ss_pred eeeEEE
Confidence 766543
No 98
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=40.14 E-value=49 Score=27.64 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=40.2
Q ss_pred cccccceEEEeCccCC----hhhHHHHHHHHHhcCCEEe--cCccccccccCCCCccccccccCceEEEEEeCCHHHHHH
Q 005047 541 CNAMVETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAID 614 (716)
Q Consensus 541 C~a~~~rv~V~~~i~d----d~f~~~l~~~~~~~~~~~~--g~~~~~~~~pv~~~~~~~eE~FGPVl~v~~~~~~deAi~ 614 (716)
|+.. -+++++-+|.| +++.+.....+++.|.+++ |+.. .++..+. .|-+.|+.|+|.+.|.+
T Consensus 2 ~M~~-~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~----------~~~eG~~-~~~~viieFpS~~aa~~ 69 (99)
T 2fiu_A 2 HMAK-GYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSV----------TELEGTA-RARNVVIEFPSVQHAID 69 (99)
T ss_dssp -CCC-EEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCE----------EEEESCC-CSEEEEEEESSHHHHHH
T ss_pred CCCc-EEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCc----------eEEecCC-cCeEEEEECCCHHHHHH
Confidence 3443 45566555542 3455555555666666553 2211 0111122 34788999999999999
Q ss_pred HHHhcCC
Q 005047 615 HIHQHGS 621 (716)
Q Consensus 615 ~aN~~~~ 621 (716)
+.|+.+|
T Consensus 70 ~~~s~~Y 76 (99)
T 2fiu_A 70 CYNSPEY 76 (99)
T ss_dssp HHHSHHH
T ss_pred HHcCHHH
Confidence 9997765
No 99
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=34.14 E-value=72 Score=24.12 Aligned_cols=36 Identities=3% Similarity=0.068 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Q 005047 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (716)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 333 (716)
+.++..-..|+.++.++|..+.......-+++..++
T Consensus 28 ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 28 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677789999999999999887776666555544
No 100
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=32.71 E-value=52 Score=32.03 Aligned_cols=70 Identities=6% Similarity=0.069 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCchHHHhhcCCCCccEEEeecCHHHHHHH
Q 005047 418 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (716)
Q Consensus 418 ~~~~~~ALaaGNtvv~Kps~~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i 497 (716)
+..++..+..||=||+|.+... ....+..++.. -||.|++++++..++- ...-.-+.+.++.+..+-..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~~--~~~s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDVD--LVQSAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCHH--HHHHHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCHH--HHHHHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 4667888999999999998633 33334555542 3999999999733221 122356777777776665555
No 101
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=32.54 E-value=30 Score=33.82 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=35.3
Q ss_pred hhcccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005047 10 FVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (716)
Q Consensus 10 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGG 61 (716)
|+++.|.+++=+.|.++.++. + +....+.|+.++++|++++++.|.
T Consensus 4 Mm~~~kli~~DlDGTLl~~~~--~----~~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 4 MMPDKKGYIIDIDGVIGKSVT--P----IPEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp --CCCSEEEEECBTTTEETTE--E----CHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCEEEEcCcCcEECCCE--e----CcCHHHHHHHHHHcCCeEEEEeCc
Confidence 344578999999999987643 2 245677888999999999999874
No 102
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=1e+02 Score=24.58 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Q 005047 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (716)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 333 (716)
+.++..-..|+.++.++|..+.......-+++..++
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM 82 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999888777666665554
No 103
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=25.78 E-value=77 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=35.7
Q ss_pred hHHhhcc--cCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005047 7 SRAFVKD--VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (716)
Q Consensus 7 ~~~~~~~--~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGG 61 (716)
.|..+++ .|.++.=+.|+++.+.++.+. ....+.|.++++.|++++|+.|=
T Consensus 18 ~~~~~~~M~ikli~~DlDGTLl~~~~~~is----~~~~~al~~l~~~Gi~v~iaTGR 70 (301)
T 2b30_A 18 VEEALKGADIKLLLIDFDGTLFVDKDIKVP----SENIDAIKEAIEKGYMVSICTGR 70 (301)
T ss_dssp HHHHTTTCCCCEEEEETBTTTBCCTTTCSC----HHHHHHHHHHHHHTCEEEEECSS
T ss_pred hhhccccccccEEEEECCCCCcCCCCCccC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 4555554 378999999999986122454 24566778888889998888753
No 104
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.91 E-value=62 Score=31.47 Aligned_cols=43 Identities=12% Similarity=0.333 Sum_probs=35.0
Q ss_pred ccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005047 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (716)
Q Consensus 13 ~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGG 61 (716)
+.|.+++=+.|.++.++. .+....+.|..++++|++++++.|.
T Consensus 5 ~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTE------KIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CCSEEEEECSSSTTCHHH------HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCEEEEeCcCceEeCCE------eCccHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999987532 3466788899999999999999873
No 105
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=23.73 E-value=85 Score=28.72 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=32.4
Q ss_pred EEeecCCccccCCC--cccccccccccchhchHHHHhcCCCCCcccCCcHHHHHHHHHHHHcCCcEEEeeCCCcchHHHH
Q 005047 193 VLLSDVEGLYSGPP--SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKV 270 (716)
Q Consensus 193 i~~TDVdGVy~~dP--~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~ 270 (716)
++++|+||++++.- -.++++.+..++..+- .+...+.+.|+++.|++++ ......
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~---------------------~~L~~Lk~~Gi~~~I~Tg~--~~~~~~ 67 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA---------------------IGISLLKKSGIEVRLISER--ACSKQT 67 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH---------------------HHHHHHHHTTCEEEEECSS--CCCHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH---------------------HHHHHHHHCCCEEEEEeCc--HHHHHH
Confidence 45789999998742 1333333333333222 1333455679998888887 334444
Q ss_pred hc
Q 005047 271 LE 272 (716)
Q Consensus 271 ~t 272 (716)
+.
T Consensus 68 l~ 69 (168)
T 3ewi_A 68 LS 69 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 106
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=22.46 E-value=93 Score=30.11 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=33.2
Q ss_pred cccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005047 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (716)
Q Consensus 12 ~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhGG 61 (716)
+|.|.++.=+.|.++.+.. .+. ....+.|..+++.|++++++.|=
T Consensus 3 ~M~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 47 (274)
T 3fzq_A 3 KLYKLLILDIDGTLRDEVY-GIP----ESAKHAIRLCQKNHCSVVICTGR 47 (274)
T ss_dssp -CCCEEEECSBTTTBBTTT-BCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcceEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678999999999998654 343 34566677788899988887753
No 107
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.46 E-value=1.3e+02 Score=24.93 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 005047 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLIKV 335 (716)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 335 (716)
+.++..-..|+.++.+++..+.......-+++..++..
T Consensus 36 eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 73 (101)
T 1v63_A 36 ERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73 (101)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788999999999999999888877777777765
No 108
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=21.62 E-value=1.3e+02 Score=23.24 Aligned_cols=31 Identities=3% Similarity=0.146 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCH
Q 005047 300 ARESSRRLQALQSQDRRKILLDVADALEANE 330 (716)
Q Consensus 300 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~ 330 (716)
++..-..|+.++.++|..+.......-+++.
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999998777665544443
No 109
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=21.46 E-value=1e+02 Score=29.81 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=33.1
Q ss_pred cccCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 005047 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSS 60 (716)
Q Consensus 12 ~~~~~iVIKiGGs~l~~~~~~~~~~~~~~~a~~I~~l~~~G~~vvIVhG 60 (716)
+|.|.++.=+.|+++.+.+..+. ....+.|.+++++|+++++..|
T Consensus 10 ~miKli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTG 54 (268)
T 3r4c_A 10 HMIKVLLLDVDGTLLSFETHKVS----QSSIDALKKVHDSGIKIVIATG 54 (268)
T ss_dssp SCCCEEEECSBTTTBCTTTCSCC----HHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcC
Confidence 45688999999999973333344 3456777888889999888764
Done!