Query 005048
Match_columns 716
No_of_seqs 273 out of 616
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 17:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 6.5E-37 1.4E-41 362.2 4.8 432 2-597 394-834 (904)
2 smart00542 FYRC "FY-rich" doma 99.9 3.9E-23 8.4E-28 182.1 7.4 81 530-617 1-81 (86)
3 PF05965 FYRC: F/Y rich C-term 99.9 1.7E-22 3.7E-27 177.0 5.6 83 527-616 2-84 (86)
4 KOG0958 DNA damage-responsive 99.8 2.3E-21 5E-26 218.2 2.9 82 2-86 238-321 (690)
5 PF05964 FYRN: F/Y-rich N-term 99.8 1.5E-19 3.2E-24 146.8 5.6 52 472-523 2-54 (54)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.6 3.4E-16 7.3E-21 127.2 4.2 54 163-216 1-54 (54)
7 smart00541 FYRN "FY-rich" doma 99.6 1.5E-15 3.3E-20 118.9 4.7 41 482-522 2-43 (44)
8 PF02373 JmjC: JmjC domain, hy 99.4 6.4E-14 1.4E-18 125.4 3.0 55 2-56 60-114 (114)
9 smart00154 ZnF_AN1 AN1-like Zi 52.3 7.4 0.00016 30.2 1.1 34 163-198 1-36 (39)
10 KOG1356 Putative transcription 33.8 76 0.0016 39.3 6.0 69 14-85 790-860 (889)
11 PF04282 DUF438: Family of unk 26.3 2.2E+02 0.0048 25.2 6.1 32 664-695 14-45 (71)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=6.5e-37 Score=362.18 Aligned_cols=432 Identities=29% Similarity=0.341 Sum_probs=295.1
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL 81 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f 81 (716)
++|+++++++|..|..+|||||+++|+|||||||||++||+|||+||||+|+|||||.+||++|+.++++|+...+.++|
T Consensus 394 ~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lf 473 (904)
T KOG1246|consen 394 LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLF 473 (904)
T ss_pred cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhc-ccCCCccchhhccccchhhHHHHHHHHHHHHhhcccCchhhhhhhcccccCCccc
Q 005048 82 SHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTE 160 (716)
Q Consensus 82 ShdeLL~~~A~~a~~~l~el~ll~-ke~~~~~~w~~~c~kdgil~~alk~rv~~E~~r~~~lp~~~k~~kme~d~d~~de 160 (716)
||++|++.+|+..+...+.+.+.. ++..-...|...+...+.....+..+ |+...+.++ |...+
T Consensus 474 s~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~ 538 (904)
T KOG1246|consen 474 SHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESLP------------DDMLE 538 (904)
T ss_pred CHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhcc------------chhhH
Confidence 999999999998876655443322 11111223333333333332222211 111112121 11238
Q ss_pred ccccccccccccccccccccCCcceeccchhhhcCCCCCCeEEEEecCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhccC
Q 005048 161 RECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCS 240 (716)
Q Consensus 161 reC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~~lCsC~~~~k~L~yRYt~eEL~~Lv~~Le~r~~~~~~W~~k~~~~l~~s 240 (716)
++|..|+++||++++.|+|.+.++.||.|..++|+|....++++|||++++|..++.+++.+...+..|..++.+++...
T Consensus 539 ~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 618 (904)
T KOG1246|consen 539 RQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKLPWFGRVDGALPSL 618 (904)
T ss_pred HHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcchhhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCC-CcccccccccccCcccccccccCCCCCcccccccCCCCccCCCCccccccccCCCCCCCccccccccccCCCCCC
Q 005048 241 DTDG-GLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGN 319 (716)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (716)
..-+ ...+.-.+. ...++. .++ +. ++.++ .| .
T Consensus 619 ~~~~~~~~e~~~e~--------------------~~~~n~-~~~-----~~-k~~~~----rt----------~------ 651 (904)
T KOG1246|consen 619 GFRGANLLEHAGEK--------------------ILGMNT-VQC-----YM-KVPGS----RT----------T------ 651 (904)
T ss_pred ccCCcchHHHHHHH--------------------hhcccc-cce-----ee-ccccc----cc----------h------
Confidence 6432 111110000 000000 000 00 00000 00 0
Q ss_pred CcccccccccccccceeecccCCcCCCCCCcccccccCCChhhHHHhhhhhhhhhhhhhccccccccccccccccCCCCC
Q 005048 320 DETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSS 399 (716)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~d~~~~~~~~~~~ 399 (716)
. . ..+....|+++|++.. + |+-..|.+.+.-+
T Consensus 652 ~----~---~~n~~~~s~~~n~~p~-~--------------------------~~~~~v~~~~~~~-------------- 683 (904)
T KOG1246|consen 652 A----H---QENSALASININLGPG-D--------------------------CVWFAVPLEYWGV-------------- 683 (904)
T ss_pred h----H---HHHHHHhhhhccCCcc-c--------------------------ceeeecccchhHH--------------
Confidence 0 0 0112223333333221 0 0111111111000
Q ss_pred CCCCCCCCCCCCCcccccCccccccccccccccCCCcccCCCccccccccccccCCccccccCccccccccCCceeEEee
Q 005048 400 NSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINF 479 (716)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~llsL 479 (716)
....|... ++... . ..+.++.+...+
T Consensus 684 ----------------~~~~~~~~-----------~~~~~-----------------------~----~~~w~~~~~~l~ 709 (904)
T KOG1246|consen 684 ----------------VEDACEKH-----------NLKYS-----------------------D----SSVWPSSEEELL 709 (904)
T ss_pred ----------------HHHHHhhc-----------ccccc-----------------------c----hhccchhhHHHH
Confidence 00000000 00000 0 000011344567
Q ss_pred eeeecCCCccCCCcccCCCeEEEEEeccccCC-CceeEEEEEEeeCCCCCceEEEEeC---CCCC---CeEEcCChhHHH
Q 005048 480 GCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNP-EKVCNYISEVLDAGLLGPLFKVTLE---ECPS---ETFVNVSAQKCW 552 (716)
Q Consensus 480 G~Iv~dr~fHse~yIyPvGF~S~R~Y~S~~dP-~~rc~Y~ceIlD~G~~~PlFrVt~e---d~P~---~~f~g~Spt~cW 552 (716)
|.++....|-++....+-++.++..+..+.+| +...+|+.++++++...|+|++... ..+. .++.......+|
T Consensus 710 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (904)
T KOG1246|consen 710 NLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEKE 789 (904)
T ss_pred hccchHHHHHhccccccccCCceEEEeeecCccccceecccccchhhhhcchhhhhhhhhccCcccchhhhhhhhHhhcc
Confidence 77787788999999999999999999999999 9999999999999988999999998 6666 788899999999
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHH
Q 005048 553 EMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPII 597 (716)
Q Consensus 553 ~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~ 597 (716)
.++..+...++.+.......++..++.-..+++-.++++..|.+.
T Consensus 790 ~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 834 (904)
T KOG1246|consen 790 VMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFHEICVAVPEKV 834 (904)
T ss_pred hhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhhheecccCCCc
Confidence 999988887766521122222323344567889999999988876
No 2
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.88 E-value=3.9e-23 Score=182.11 Aligned_cols=81 Identities=36% Similarity=0.658 Sum_probs=71.6
Q ss_pred eEEEEeCCCCCCeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCCcch
Q 005048 530 LFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLC 609 (716)
Q Consensus 530 lFrVt~ed~P~~~f~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~~lIEsLP~a~~C 609 (716)
+|||+++|+|+++|+|.||++||.+|+++|++++.++ |...+ .+..+||+|||||++|+|++|||+|||+++|
T Consensus 1 lF~v~~~~~~~~~~~~~S~~~~W~~vl~~v~~~r~~~---~~~~~----~~~~isG~~mFGls~p~V~~lie~Lpga~~C 73 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPEKCWEMVLERVQEARIVA---RLLQL----LPEGVSGEDMFGLSSPAVVKLIEQLPGVHQC 73 (86)
T ss_pred CeEEEEecCCCCeEEeCCHHHHHHHHHHHHHHHHHHc---ccCCC----CCCCCCcHHHhCCCcHHHHHHHHhCCCchhh
Confidence 6999999999999999999999999999999996443 22222 4678999999999999999999999999999
Q ss_pred hhcccccc
Q 005048 610 MEYWNHKL 617 (716)
Q Consensus 610 ~~Y~~~~~ 617 (716)
++||++..
T Consensus 74 ~~Y~~~~~ 81 (86)
T smart00542 74 TNYWFRYH 81 (86)
T ss_pred hhhhhccC
Confidence 99999853
No 3
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.86 E-value=1.7e-22 Score=176.98 Aligned_cols=83 Identities=33% Similarity=0.499 Sum_probs=60.1
Q ss_pred CCceEEEEeCCCCCCeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCC
Q 005048 527 LGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPN 606 (716)
Q Consensus 527 ~~PlFrVt~ed~P~~~f~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~~lIEsLP~a 606 (716)
++|+|+|+++|+|++.|+|.||++||.+|+++|++. |...+... .++.+++|++||||++|.|++|||+||||
T Consensus 2 ~~P~F~Vt~~d~p~~~~~g~s~~~~W~~i~~~v~~~---r~~~~~~~----~~~~~isG~~~FGls~p~V~~lie~Lp~a 74 (86)
T PF05965_consen 2 GGPLFEVTSEDDPGEVFEGSSPTEAWSEILERVNEA---RKQSGLLK----LPPNSISGPEMFGLSNPAVQRLIESLPGA 74 (86)
T ss_dssp -SEEEEEEETT-GGG-EEESSHHHHHHHHHHHHHHH---HT-----------TT----HHHHHSTTSHHHHHHHTTSTTG
T ss_pred CCCEEEEEECCCCCCEEEeCCHHHHHHHHHHHHHHH---Hhhccccc----cCCCCCCHhHhcCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999999999999999986 32223111 25789999999999999999999999999
Q ss_pred cchhhccccc
Q 005048 607 HLCMEYWNHK 616 (716)
Q Consensus 607 ~~C~~Y~~~~ 616 (716)
++|++|.++.
T Consensus 75 ~~c~~Y~f~~ 84 (86)
T PF05965_consen 75 DKCSNYKFRY 84 (86)
T ss_dssp GG-TT-----
T ss_pred chhhcCCccc
Confidence 9999996553
No 4
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=99.82 E-value=2.3e-21 Score=218.17 Aligned_cols=82 Identities=49% Similarity=0.875 Sum_probs=74.2
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL 81 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f 81 (716)
||+|++++++|.+|+++|||+++++|++||||||||..|||||||||||+|++|||++.|+++|.+|..+ .|+..++
T Consensus 238 FLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C---~C~~d~v 314 (690)
T KOG0958|consen 238 FLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLC---SCRSDSV 314 (690)
T ss_pred HHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhccccccc---cccccee
Confidence 7999999999999999999999999999999999999999999999999999999999999999999875 4555443
Q ss_pred --cHHHH
Q 005048 82 --SHDKL 86 (716)
Q Consensus 82 --ShdeL 86 (716)
|.+.+
T Consensus 315 kism~~f 321 (690)
T KOG0958|consen 315 KISMDPF 321 (690)
T ss_pred eeechhh
Confidence 44443
No 5
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.78 E-value=1.5e-19 Score=146.83 Aligned_cols=52 Identities=25% Similarity=0.620 Sum_probs=40.8
Q ss_pred CceeEEeeeeeecCC-CccCCCcccCCCeEEEEEeccccCCCceeEEEEEEee
Q 005048 472 TCVEPINFGCVMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLD 523 (716)
Q Consensus 472 ~sv~llsLG~Iv~dr-~fHse~yIyPvGF~S~R~Y~S~~dP~~rc~Y~ceIlD 523 (716)
++|+|+|||+|++++ +|||++||||+||+|+|+|||+.||+++|+|+|||+|
T Consensus 2 gsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 2 GSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 479999999999999 8999999999999999999999999999999999997
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.61 E-value=3.4e-16 Score=127.15 Aligned_cols=54 Identities=41% Similarity=0.835 Sum_probs=52.3
Q ss_pred ccccccccccccccccccCCcceeccchhhhcCCCCCCeEEEEecCHHHHHHHH
Q 005048 163 CFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLV 216 (716)
Q Consensus 163 C~iCk~~cyLSaV~C~C~p~~~~CL~Ha~~lCsC~~~~k~L~yRYt~eEL~~Lv 216 (716)
|.+||++||||+|.|+|+|++++||.|+.++|+|++++++|+|||+++||+.||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999999999999999999999999999999999999999885
No 7
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.58 E-value=1.5e-15 Score=118.89 Aligned_cols=41 Identities=34% Similarity=0.683 Sum_probs=36.5
Q ss_pred eecCC-CccCCCcccCCCeEEEEEeccccCCCceeEEEEEEe
Q 005048 482 VMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVL 522 (716)
Q Consensus 482 Iv~dr-~fHse~yIyPvGF~S~R~Y~S~~dP~~rc~Y~ceIl 522 (716)
++.++ +|||++||||+||+|+|+|||++||+++|+|+|.|.
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~ 43 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVID 43 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEEC
Confidence 34555 799999999999999999999999999999976664
No 8
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.42 E-value=6.4e-14 Score=125.40 Aligned_cols=55 Identities=51% Similarity=0.754 Sum_probs=48.1
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhccc
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 56 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNF 56 (716)
++.++..++.|..|.++|||+++++|+||||||++|++||+++|.|++++||+||
T Consensus 60 ~~~~~~~~~~p~~l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 60 FLDHKNIFVSPEQLKKAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp GGCTGGEEEGHHHHHHTTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccccccceeeeeccCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 3678899999999999999999999999999999999999999999999999998
No 9
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=52.34 E-value=7.4 Score=30.16 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=26.4
Q ss_pred cccccccccccccccc-ccCCcceeccchh-hhcCCCC
Q 005048 163 CFSCFYDLHLSAAGCK-CSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 163 C~iCk~~cyLSaV~C~-C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
|.+|+...+|..+.|. |. .++|+.|-. +..+|+.
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~~ 36 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCPG 36 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCcc
Confidence 7889999999889999 74 689999973 3345543
No 10
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.81 E-value=76 Score=39.33 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=54.9
Q ss_pred hHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCC--CCcHHH
Q 005048 14 VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKT--SLSHDK 85 (716)
Q Consensus 14 ~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~--~fShde 85 (716)
+..+.||.-..++|..|+.||.--+|-|.--|.--.+.=|+.|..|.-+..- +..-++.+.+| .+.|+.
T Consensus 790 LkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec---~rLT~EfR~Lp~~h~~~eD 860 (889)
T KOG1356|consen 790 LKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSEC---FRLTQEFRQLPQNHKNHED 860 (889)
T ss_pred HHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHH---HHHHHHHhhCCCcccchHH
Confidence 3556899999999999999999999999999988888888899999877744 44444455555 666643
No 11
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.27 E-value=2.2e+02 Score=25.18 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhhhcChHHHHHHHHHhhccC
Q 005048 664 VEEEAQLVLRGLFQKASPKELKVMQRILYSEG 695 (716)
Q Consensus 664 ~~~~~~~~l~~~~~~~~~~el~~~~~~~~~~~ 695 (716)
.+++++.-+..+|...+|.|+..|-+-|..++
T Consensus 14 ~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG 45 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSDVSASEISAAEQELIQEG 45 (71)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 57788888888898999999888855555544
Done!