Query 005048
Match_columns 716
No_of_seqs 273 out of 616
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wzo_A Transforming growth fac 100.0 1.2E-43 4.1E-48 337.3 12.8 143 463-618 2-145 (146)
2 3avr_A Lysine-specific demethy 99.9 2.9E-25 1E-29 247.2 12.1 194 5-220 320-521 (531)
3 3dxt_A JMJC domain-containing 99.9 5.4E-23 1.8E-27 219.2 3.4 87 2-89 241-327 (354)
4 2ox0_A JMJC domain-containing 99.9 5.3E-23 1.8E-27 221.5 3.3 87 2-89 259-345 (381)
5 3opt_A DNA damage-responsive t 99.8 2.3E-22 7.9E-27 215.4 4.6 70 2-71 284-353 (373)
6 4ask_A Lysine-specific demethy 99.8 2.3E-18 7.8E-23 190.0 13.8 196 6-221 296-497 (510)
7 2xxz_A Lysine-specific demethy 99.6 2.7E-16 9.3E-21 166.9 4.0 70 4-74 260-329 (332)
8 2ypd_A Probable JMJC domain-co 93.3 0.035 1.2E-06 60.3 2.8 72 4-78 270-345 (392)
9 3kv4_A PHD finger protein 8; e 38.8 58 0.002 36.1 7.5 82 19-100 297-381 (447)
10 3k2o_A Bifunctional arginine d 38.8 13 0.00044 39.5 2.3 48 19-66 252-299 (336)
11 1wfh_A Zinc finger (AN1-like) 36.6 13 0.00043 31.0 1.4 38 160-199 15-53 (64)
12 3k3o_A PHF8, PHD finger protei 35.4 66 0.0023 34.8 7.1 81 19-99 213-296 (371)
13 1wg2_A Zinc finger (AN1-like) 34.1 15 0.00051 30.6 1.4 38 160-199 15-53 (64)
14 1wff_A Riken cDNA 2810002D23 p 33.2 16 0.00055 32.0 1.6 37 160-198 25-63 (85)
15 1wfp_A Zinc finger (AN1-like) 33.1 16 0.00056 31.2 1.6 38 160-199 25-63 (74)
16 3kv5_D JMJC domain-containing 31.8 90 0.0031 34.8 7.7 79 18-96 331-412 (488)
17 3pua_A GRC5, PHD finger protei 28.9 1.3E+02 0.0043 32.9 8.0 80 19-98 240-322 (392)
18 1wfl_A Zinc finger protein 216 28.6 23 0.0008 30.2 1.8 37 160-198 25-62 (74)
19 1x4w_A Hypothetical protein FL 23.9 24 0.0008 29.7 0.9 38 160-199 15-56 (67)
20 3kv9_A JMJC domain-containing 23.1 1E+02 0.0035 33.6 6.0 77 19-95 241-320 (397)
21 2yu1_A JMJC domain-containing 23.0 1.7E+02 0.0059 32.3 7.9 50 21-70 264-313 (451)
22 3al5_A HTYW5, JMJC domain-cont 22.1 45 0.0015 35.0 2.9 40 20-59 237-276 (338)
23 3vu7_H DNA repair protein REV1 21.3 1.7E+02 0.0059 26.9 6.3 52 663-715 55-113 (124)
No 1
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=337.28 Aligned_cols=143 Identities=22% Similarity=0.422 Sum_probs=131.7
Q ss_pred ccccccccCCceeEEeeeeeecCC-CccCCCcccCCCeEEEEEeccccCCCceeEEEEEEeeCCCCCceEEEEeCCCCCC
Q 005048 463 DQRFQKKLETCVEPINFGCVMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSE 541 (716)
Q Consensus 463 ~~~~~~~~~~sv~llsLG~Iv~dr-~fHse~yIyPvGF~S~R~Y~S~~dP~~rc~Y~ceIlD~G~~~PlFrVt~ed~P~~ 541 (716)
+|.+|..++ +++|+|||+|++++ +|||++||||+||+++|+|||++||+++|+|+|+|+|+| .+|+|+|+++|+|++
T Consensus 2 ~p~lP~~~g-~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~-~~P~F~V~~e~~~~~ 79 (146)
T 2wzo_A 2 RPVFPIGLG-GLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGG-VQPQFEIVPEDDPQN 79 (146)
T ss_dssp CCCCCEEET-TEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECS-SSEEEEEEETTCGGG
T ss_pred CceecEEEC-CEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECC-CcceeEEEecCCCCc
Confidence 588998888 79999999999998 699999999999999999999999999999999999987 699999999999999
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCCcchhhccccccc
Q 005048 542 TFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLL 618 (716)
Q Consensus 542 ~f~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~~lIEsLP~a~~C~~Y~~~~~~ 618 (716)
.|+|.||++||++|+++|++.+ |+. + +..+++|+|||||++|.|+++||+|||+++|++|+|++|+
T Consensus 80 ~~~g~Sp~~~W~~il~~i~~~~------~~~-~----~~~~~sG~~~FGl~~p~V~~lie~Lpg~~~C~~Y~~~~f~ 145 (146)
T 2wzo_A 80 AIVSSSADACHAELLRTISTTM------GKL-M----PNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFD 145 (146)
T ss_dssp CEEESSHHHHHHHHHHHHHHHH------TCC-C----TTCCCCHHHHHTTTSHHHHHHHTTSTTGGGCTTCCCCCCC
T ss_pred eEEeCChHHHHHHHHHHHHHHh------cCc-C----CCCCCChhheecCCCHHHHHHHHhCCCchhcccCCcEEee
Confidence 9999999999999999999873 211 2 2346899999999999999999999999999999999985
No 2
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=99.92 E-value=2.9e-25 Score=247.24 Aligned_cols=194 Identities=18% Similarity=0.142 Sum_probs=135.0
Q ss_pred cceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhc---CCCCC
Q 005048 5 EQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQH---RKTSL 81 (716)
Q Consensus 5 ~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~---r~~~f 81 (716)
+...+.+|+.|.++||||||++|+||+||||||+|||+|||+|||++||+|||+++|++++. |+++|+..+ ..++|
T Consensus 320 ~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~~~-A~e~y~~Nk~~~~~siv 398 (531)
T 3avr_A 320 MGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKL-AVERYEWNKLQSVKSIV 398 (531)
T ss_dssp TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSHHHHHH-HHHHHHHHHHHTCCCSS
T ss_pred hceeecCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCchHHHHH-HHHHHHHhhhccCCCCC
Confidence 44677899999999999999999999999999999999999999999999999999999975 888886543 36999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhhccccchhhHHHHHHHHHHHHhhcccCc-hhhhhhhcccccCCccc
Q 005048 82 SHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLP-SYFKLQKMEIDFDLKTE 160 (716)
Q Consensus 82 ShdeLL~~~A~~a~~~l~el~ll~ke~~~~~~w~~~c~kdgil~~alk~rv~~E~~r~~~lp-~~~k~~kme~d~d~~de 160 (716)
++++|++++|+... . ..++...+...| |...++. .+..++.+. .+.... .......+..
T Consensus 399 p~~~L~wn~a~~~~-------~---~d~~l~~~ik~~-----L~rsl~~----~~~~~~~l~~~g~~i~-~~~~~~~~~~ 458 (531)
T 3avr_A 399 PMVHLSWNMARNIK-------V---SDPKLFEMIKYC-----LLRTLKQ----CQTLREALIAAGKEII-WHGRTKEEPA 458 (531)
T ss_dssp CHHHHHHHHHHHCC-------C---CCHHHHHHHHHH-----HHHHHHH----HHHHHHHHHHTTCCEE-ECCCCTTCCC
T ss_pred CHHHHHHHHHhhhh-------c---ccHHHHHHHHHH-----HHHHHHH----HHHHHHHHHhCCCEEE-eccccCCCCC
Confidence 99999999987410 0 000011111111 1111111 010111110 000000 0000011467
Q ss_pred cccccccccccccccccccc----CCcceeccchhhhcCCCCCCeEEEEecCHHHHHHHHHHHH
Q 005048 161 RECFSCFYDLHLSAAGCKCS----PDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALE 220 (716)
Q Consensus 161 reC~iCk~~cyLSaV~C~C~----p~~~~CL~Ha~~lCsC~~~~k~L~yRYt~eEL~~Lv~~Le 220 (716)
+.|..|+..||++.+.|..+ ...+.|++|+...|.| .++.+++|||+++||..+.+++.
T Consensus 459 ~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~~~-l~~~~v~~ry~~eeL~~~yd~f~ 521 (531)
T 3avr_A 459 HYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGN-LENFVVLEQYKMEDLMQVYDQFT 521 (531)
T ss_dssp EECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHCTT-CTTCEEEECSCHHHHHHHHHTCC
T ss_pred eeccccchhheeeEEEEecCCCCCCCCcCChhhhhhcCcc-ccceEEEEEcCHHHHHHHHHheE
Confidence 89999999999999888531 2346899999875554 35678999999999999998875
No 3
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=99.86 E-value=5.4e-23 Score=219.22 Aligned_cols=87 Identities=41% Similarity=0.777 Sum_probs=79.0
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL 81 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f 81 (716)
||+|++++++|+.|+++||||++++|+|||||||||++||+|||+||||+||||||+++||++|+.|.++... .....|
T Consensus 241 fL~h~~~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~C~-~~~v~i 319 (354)
T 3dxt_A 241 FLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCG-EARVTF 319 (354)
T ss_dssp GGGGCCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCCSS-SCCCCH
T ss_pred HHhcCcccCCHHHHHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhhhccccccc-Ccccee
Confidence 7899999999999999999999999999999999999999999999999999999999999999999876443 334568
Q ss_pred cHHHHHHH
Q 005048 82 SHDKLLFG 89 (716)
Q Consensus 82 ShdeLL~~ 89 (716)
++|.++-.
T Consensus 320 ~~d~~~~~ 327 (354)
T 3dxt_A 320 SMDAFVRI 327 (354)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHh
Confidence 99988643
No 4
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=99.86 E-value=5.3e-23 Score=221.49 Aligned_cols=87 Identities=43% Similarity=0.735 Sum_probs=78.6
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL 81 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f 81 (716)
||+|+++|++|++|+++|||||+++|+|||||||||+|||+|||+||||+||||||+++|+++|..|.+++.. ...-.+
T Consensus 259 ~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~-~~~v~i 337 (381)
T 2ox0_A 259 FLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCR-KDMVKI 337 (381)
T ss_dssp GGGGSCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSS-TTCCCC
T ss_pred HhhccccccCHHHHHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhcccc-CCceee
Confidence 7899999999999999999999999999999999999999999999999999999999999999999876332 334466
Q ss_pred cHHHHHHH
Q 005048 82 SHDKLLFG 89 (716)
Q Consensus 82 ShdeLL~~ 89 (716)
+||.|+-+
T Consensus 338 ~~d~~~~~ 345 (381)
T 2ox0_A 338 SMDVFVRK 345 (381)
T ss_dssp CCHHHHHH
T ss_pred cHHHHHHH
Confidence 89998654
No 5
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=99.85 E-value=2.3e-22 Score=215.43 Aligned_cols=70 Identities=41% Similarity=0.803 Sum_probs=57.5
Q ss_pred ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHH
Q 005048 2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVEL 71 (716)
Q Consensus 2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~ 71 (716)
||+|+++|++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++||++|+.|..+
T Consensus 284 fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~a~~C 353 (373)
T 3opt_A 284 FLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAGKC 353 (373)
T ss_dssp CTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC------------
T ss_pred HhhCCcccCCHHHHHhcCCceEEEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHHhhccCccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999876
No 6
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=99.76 E-value=2.3e-18 Score=189.99 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=127.2
Q ss_pred ceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcch--hhhhHhHHHHHHhhcCCCCCcH
Q 005048 6 QVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW--LAHGQQAVELYSEQHRKTSLSH 83 (716)
Q Consensus 6 lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dW--L~~G~~a~~~y~~~~r~~~fSh 83 (716)
...+.+|+.|.++||||||++|+|||||||||++||.+||+||++++|+|||+++| +..+.++.++|+..+..++|++
T Consensus 296 ~~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~qlqlA~e~y~~n~~~~~~SivPm 375 (510)
T 4ask_A 296 GSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPM 375 (510)
T ss_dssp SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHHHHHHHHHHHHHHTTCCCSSCH
T ss_pred ccccCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCHHHHHHHHHHHHHHHHhCcCcccCh
Confidence 35577999999999999999999999999999999999999999999999999997 4556667778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCccchhhccccchhhHHHHHHHHHHHHhhcccCchhhhhhhcccccCCcccccc
Q 005048 84 DKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTEREC 163 (716)
Q Consensus 84 deLL~~~A~~a~~~l~el~ll~ke~~~~~~w~~~c~kdgil~~alk~rv~~E~~r~~~lp~~~k~~kme~d~d~~dereC 163 (716)
++|++++|+.... . .++..+..+ ..|...++ ..+++.+..... +.+. +.........-..|
T Consensus 376 ~~L~Wn~Ar~~k~-------~---d~~l~~liK-----~~L~rSL~-~~~~~~d~~~~~--g~~i-~~~~~~~~~~~~~C 436 (510)
T 4ask_A 376 IHVSWNVARTVKI-------S---DPDLFKMIK-----FCLLQSMK-HCQVQRESLVRA--GKKI-AYQGRVKDEPAYYC 436 (510)
T ss_dssp HHHHHHHHHHCCC-------C---CHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHH--TCCE-EECCCCTTCCCEEC
T ss_pred HHHHHHHHhhhhc-------c---CHHHHHHHH-----HHHHHHHH-HHHHHHHHHHhC--CCEE-eecCcCCCCccccc
Confidence 9999999974110 0 000000000 11222222 122222111100 0000 00011100123689
Q ss_pred ccccccccccccccccc--CC--cceeccchhhhcCCCCCCeEEEEecCHHHHHHHHHHHHh
Q 005048 164 FSCFYDLHLSAAGCKCS--PD--RFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEG 221 (716)
Q Consensus 164 ~iCk~~cyLSaV~C~C~--p~--~~~CL~Ha~~lCsC~~~~k~L~yRYt~eEL~~Lv~~Le~ 221 (716)
..|..-+|-=-..-.-+ ++ .+.|+.+|..... .-...+++.+|+++||..+.+.+..
T Consensus 437 ~~C~~evFn~l~v~~~~~~~~~~~v~C~~Ca~~~~~-~~~~~~vl~~y~~~~L~~iyD~f~l 497 (510)
T 4ask_A 437 NECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSA-GLQGVVVLEQYRTEELAQAYDAFTL 497 (510)
T ss_dssp TTTCCEECSEEEEEECC----CEEEECHHHHHHSTT-TTTTCEEEESSCHHHHHHHHHHCCC
T ss_pred CCCCeEEEEEEEEEecCCCCCccceEChHhhhhcCC-CcceEEEEEEccHHHHHHHHhCeEe
Confidence 99998887322221211 12 3689988865432 3456788999999999999887653
No 7
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.7e-16 Score=166.93 Aligned_cols=70 Identities=27% Similarity=0.237 Sum_probs=60.1
Q ss_pred ccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHh
Q 005048 4 VEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSE 74 (716)
Q Consensus 4 ~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~ 74 (716)
++..++++|+.|.++||||||++|+||+||||||+|||+|||+||+++||+|||+++|+.+ +.|+++|+-
T Consensus 260 ~~~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~-~~a~erye~ 329 (332)
T 2xxz_A 260 LTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQY-QLALERYEW 329 (332)
T ss_dssp TTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTGGG-GGC------
T ss_pred hhceecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHHHH-HHHHHHHHh
Confidence 3456789999999999999999999999999999999999999999999999999999976 589998875
No 8
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=93.27 E-value=0.035 Score=60.31 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=55.6
Q ss_pred ccceeeeChh----hHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCC
Q 005048 4 VEQVTQLSPS----VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRK 78 (716)
Q Consensus 4 ~~lvtmvsP~----~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~ 78 (716)
|.....++.. +..+.||..+.+.|.+||.|+.-++++|.--|.+-.+.=|.||..+.-+... ++.-++.++.
T Consensus 270 hdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c---~~lt~E~R~l 345 (392)
T 2ypd_A 270 RDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVES---FHLTQELRLL 345 (392)
T ss_dssp HHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHH---HHHHHHC---
T ss_pred cCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHH---HHHHHHHhhc
Confidence 4456667763 3456899999999999999999999999999999999999999998877644 4433444443
No 9
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=38.80 E-value=58 Score=36.05 Aligned_cols=82 Identities=9% Similarity=-0.046 Sum_probs=60.1
Q ss_pred CCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCC--CCc-HHHHHHHHHHHHH
Q 005048 19 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKT--SLS-HDKLLFGSVQAAI 95 (716)
Q Consensus 19 GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~--~fS-hdeLL~~~A~~a~ 95 (716)
....++++|+|||-++.-.+=+|+-+|..-.++=.-||....-|+.-.+..+.=++.+-+. .|. ++.++.-.|....
T Consensus 297 ~~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~~~~~~~p~f~~~~w~~~~~~~ 376 (447)
T 3kv4_A 297 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHIL 376 (447)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTCCGGGSCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcCCCccccccCHHHHHHHHHHHHH
Confidence 4577999999999999999999999999999999999999998887776665444443333 243 3555555555444
Q ss_pred HHHHH
Q 005048 96 KALWE 100 (716)
Q Consensus 96 ~~l~e 100 (716)
..+++
T Consensus 377 ~~~~~ 381 (447)
T 3kv4_A 377 DIFRG 381 (447)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 10
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=38.78 E-value=13 Score=39.49 Aligned_cols=48 Identities=19% Similarity=0.085 Sum_probs=43.4
Q ss_pred CCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhH
Q 005048 19 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQ 66 (716)
Q Consensus 19 GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~ 66 (716)
+.+.+.++|+||+-++.-++-+|...|.+-+++=+.||.....|+.-.
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~ 299 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVW 299 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHH
Confidence 467899999999999999999999999999999999999998877543
No 11
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.63 E-value=13 Score=31.04 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=29.8
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEID 199 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~~ 199 (716)
...|..|+.-+-|..+.|.|. ..+|..|-. +...|.-+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg--~~FC~~HRy~e~H~C~fD 53 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCG--TTFCGSHRYPEVHGCTFD 53 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSS--CEECTTTCSTTTTTCCCC
T ss_pred CCcChhhCCccCccCEEeecC--CEeccccCCcccCCCCch
Confidence 468999999988889999984 689999963 34567543
No 12
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=35.42 E-value=66 Score=34.83 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=57.6
Q ss_pred CCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCC--CCc-HHHHHHHHHHHHH
Q 005048 19 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKT--SLS-HDKLLFGSVQAAI 95 (716)
Q Consensus 19 GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~--~fS-hdeLL~~~A~~a~ 95 (716)
....++++|+|||-++.-++=+|+-+|..-.++=.-||....=|+.-.++.+.=++.+.+. .|. .+.++.-.|....
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~w~~~~~~~ 292 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHIL 292 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----CCCTTHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999988887766655434444333 343 3555555555443
Q ss_pred HHHH
Q 005048 96 KALW 99 (716)
Q Consensus 96 ~~l~ 99 (716)
..++
T Consensus 293 ~~~~ 296 (371)
T 3k3o_A 293 DIFR 296 (371)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 13
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.07 E-value=15 Score=30.62 Aligned_cols=38 Identities=29% Similarity=0.618 Sum_probs=29.6
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEID 199 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~~ 199 (716)
...|..|+.-+-|..+.|.|. ..+|..|-. +...|.-+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg--~~FC~~HR~~e~H~C~fD 53 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCG--STFCGSHRYPEKHECSFD 53 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTS--CEECSSSCSSTTTTCCCC
T ss_pred CCcChhhCCcccccCeEeecC--CEecccCCCccccCCCcc
Confidence 458999999988889999884 689999973 34566543
No 14
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.24 E-value=16 Score=31.96 Aligned_cols=37 Identities=24% Similarity=0.573 Sum_probs=28.7
Q ss_pred cccccccccccccc-cccccccCCcceeccchh-hhcCCCC
Q 005048 160 ERECFSCFYDLHLS-AAGCKCSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 160 ereC~iCk~~cyLS-aV~C~C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
...|..|+.-+-|. .+.|.| +.++|..|-. +...|.-
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrC--g~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRC--GNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTT--CCEECTTTCSTGGGTCCS
T ss_pred CccchhhCCeecccCCeEcCC--CCEecccCCCccCCCCcc
Confidence 45899999998885 899998 4689999973 3456654
No 15
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.13 E-value=16 Score=31.20 Aligned_cols=38 Identities=24% Similarity=0.600 Sum_probs=30.0
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEID 199 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~~ 199 (716)
...|..|+.-+-|..+.|.|. .++|..|-. +...|.-+
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg--~~FCs~HRy~e~H~C~fD 63 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCG--STFCGTHRYPESHECQFD 63 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTS--CEECTTTCSTTTSCCCSC
T ss_pred CccchhhcCcccccceEeccC--CEeccccCCCcCCCCcCc
Confidence 468999999999989999984 689999974 34567543
No 16
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.80 E-value=90 Score=34.83 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=58.5
Q ss_pred CCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC--c-HHHHHHHHHHHH
Q 005048 18 EGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL--S-HDKLLFGSVQAA 94 (716)
Q Consensus 18 ~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f--S-hdeLL~~~A~~a 94 (716)
.....++++|+|||-++.-.+=+|+-+|..-.++=.-||....=|+.-.++.+.=+..+-+..| . +++++.-+|..-
T Consensus 331 ~~~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~~~~~~~p~f~~~~w~~~~~~ 410 (488)
T 3kv5_D 331 KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNL 410 (488)
T ss_dssp SSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTCCTTSSCTTHHHHHHHHHHHH
T ss_pred cccceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCCcccccCccHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999998888777666654444444444 2 355555555443
Q ss_pred HH
Q 005048 95 IK 96 (716)
Q Consensus 95 ~~ 96 (716)
..
T Consensus 411 l~ 412 (488)
T 3kv5_D 411 LE 412 (488)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 17
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=28.85 E-value=1.3e+02 Score=32.92 Aligned_cols=80 Identities=9% Similarity=-0.057 Sum_probs=58.8
Q ss_pred CCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCC--CCc-HHHHHHHHHHHHH
Q 005048 19 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKT--SLS-HDKLLFGSVQAAI 95 (716)
Q Consensus 19 GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~--~fS-hdeLL~~~A~~a~ 95 (716)
....++++|+|||-++.-.+=+|+-+|..=.++=.-||....=|+.-.++.+.=++.+.+. .|. .+.++.-+|....
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~wy~~~~~l 319 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHLL 319 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHTCCCSSCCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhCCCccCcCCChHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999998887777666433344333 343 4555555555443
Q ss_pred HHH
Q 005048 96 KAL 98 (716)
Q Consensus 96 ~~l 98 (716)
..+
T Consensus 320 ~~~ 322 (392)
T 3pua_A 320 EAF 322 (392)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 18
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.65 E-value=23 Score=30.24 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=28.7
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
...|..|+.-+-|-.+.|.|. .++|..|-. +...|.-
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg--~~FCs~HRy~e~H~C~f 62 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCG--NLFCGLHRYSDKHNCPY 62 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTS--CEECSSSCSTTTTTCCC
T ss_pred CCcChhhCCcccccCeecCCC--CEechhcCCCccCCCcc
Confidence 358999999988888999984 689999973 3455653
No 19
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=24 Score=29.67 Aligned_cols=38 Identities=32% Similarity=0.767 Sum_probs=29.4
Q ss_pred ccccccccccccccc---ccccccCCcceeccchh-hhcCCCCC
Q 005048 160 ERECFSCFYDLHLSA---AGCKCSPDRFACLKHAN-IFCSCEID 199 (716)
Q Consensus 160 ereC~iCk~~cyLSa---V~C~C~p~~~~CL~Ha~-~lCsC~~~ 199 (716)
...|..|+.-..|.. +.|.|. .++|..|-. +...|.-+
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg--~~FC~~HRy~e~H~C~fD 56 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCG--YVFCMLHRLPEQHDCTFD 56 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSS--CCCCTTTCSTGGGTCSSC
T ss_pred CCcchhhCCeecccccCceEecCC--CEehhccCCccccCCccc
Confidence 458999999999995 889884 689999973 34566543
No 20
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=23.14 E-value=1e+02 Score=33.63 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=56.2
Q ss_pred CCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC--c-HHHHHHHHHHHHH
Q 005048 19 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL--S-HDKLLFGSVQAAI 95 (716)
Q Consensus 19 GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f--S-hdeLL~~~A~~a~ 95 (716)
....++++|+|||-++.-.+=+|+-+|..-.++=.-||....=|+.-..+.+.=...+-+..| . .++++.-+|..-.
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~~~~~~fp~F~~~~w~~a~~~l 320 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLL 320 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSTTHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCCCccCcCccHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998888999988888776655543333333333 2 3455555554433
No 21
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=22.97 E-value=1.7e+02 Score=32.33 Aligned_cols=50 Identities=6% Similarity=-0.142 Sum_probs=43.0
Q ss_pred ceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHH
Q 005048 21 PVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVE 70 (716)
Q Consensus 21 pVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~ 70 (716)
..++++++|||-++.-.+=||+-+|..-.++=..||....=++.-....+
T Consensus 264 ~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 264 DCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp CCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred cceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 57899999999999999999999999989988889998887776555444
No 22
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=22.11 E-value=45 Score=34.96 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=34.8
Q ss_pred CceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCc
Q 005048 20 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPV 59 (716)
Q Consensus 20 VpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~ 59 (716)
++.+.++++||+-++.-++-||...|.+.+++=+++|...
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~ 276 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHL 276 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSS
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCC
Confidence 4689999999999999999999999999888777767543
No 23
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.26 E-value=1.7e+02 Score=26.90 Aligned_cols=52 Identities=17% Similarity=0.408 Sum_probs=33.9
Q ss_pred ChhHHHHHH---HHHHhhhcChHHHHHH----HHHhhccCcchHHHHHHHHHHHHHHhhc
Q 005048 663 SVEEEAQLV---LRGLFQKASPKELKVM----QRILYSEGRSDEWRVALATLIEEIQKSC 715 (716)
Q Consensus 663 ~~~~~~~~~---l~~~~~~~~~~el~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 715 (716)
+.++++..+ |..+-..-+-|.+..+ +.++. ......|+.|+....+.||...
T Consensus 55 P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~rlv~-~~~~~~W~~Ay~~I~~~VQ~~m 113 (124)
T 3vu7_H 55 PMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ-QSVESVWNMAFDFILDNVQVVL 113 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHH
Confidence 344555554 5555555566665554 33433 4456799999999999999754
Done!