Query 005048
Match_columns 716
No_of_seqs 273 out of 616
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 13:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vrba1 b.82.2.11 (A:8-326) Pu 75.5 1.1 7.7E-05 42.8 4.4 49 18-66 194-242 (319)
2 d2co8a1 g.39.1.3 (A:44-76) Ned 49.9 3.8 0.00028 28.0 1.9 30 162-191 1-30 (33)
3 d1wfha_ g.80.1.1 (A:) Zinc fin 38.6 5.3 0.00039 31.3 1.4 37 160-198 15-52 (64)
4 d1wfla_ g.80.1.1 (A:) Zinc fin 36.9 6.6 0.00048 31.6 1.8 36 160-197 25-61 (74)
5 d1wfpa_ g.80.1.1 (A:) Zinc fin 36.2 6.4 0.00046 31.7 1.6 37 160-198 25-62 (74)
6 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 32.5 8.1 0.00059 31.8 1.7 37 160-198 25-63 (85)
7 d2dsya1 d.304.1.2 (A:3-82) Hyp 20.7 1.1E+02 0.0077 24.0 6.5 55 513-572 14-68 (80)
8 d1puza_ a.218.1.1 (A:) Hypothe 19.4 40 0.0029 26.7 3.6 49 666-714 21-82 (82)
9 d2d8ya2 g.39.1.3 (A:44-85) Epl 19.1 17 0.0013 26.1 1.1 32 162-195 1-32 (42)
10 d1h2ka_ b.82.2.6 (A:) Hypoxia- 18.8 24 0.0017 34.0 2.4 39 18-56 242-281 (335)
No 1
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
Probab=75.55 E-value=1.1 Score=42.84 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhH
Q 005048 18 EGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQ 66 (716)
Q Consensus 18 ~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~ 66 (716)
.+.+.+.++++||+.+..-|+-||.+.+.|-+++=+|+|..+.|.++-.
T Consensus 194 ~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~ 242 (319)
T d1vrba1 194 DLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLML 242 (319)
T ss_dssp TCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHH
T ss_pred hcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHH
Confidence 4567899999999999999999999999999999999999999988643
No 2
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.93 E-value=3.8 Score=28.04 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.3
Q ss_pred cccccccccccccccccccCCcceeccchh
Q 005048 162 ECFSCFYDLHLSAAGCKCSPDRFACLKHAN 191 (716)
Q Consensus 162 eC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~ 191 (716)
+|..|-.++.+-.-.-.--.+.++||.|..
T Consensus 1 rC~~CeatL~pG~Y~qhp~dghfyc~~hlp 30 (33)
T d2co8a1 1 RCHTCEATLWPGGYEQHPGDGHFYCLQHLP 30 (33)
T ss_dssp BCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CceeeeeEEccCcccCCCCCceEeeeeccC
Confidence 599999999998888554457899999963
No 3
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.56 E-value=5.3 Score=31.33 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=29.6
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
...|..|+.-+-|-.+.|.| +.++|..|-. +...|.-
T Consensus 15 ~~RC~~C~KKl~l~~~~CrC--g~~FC~~HR~pe~H~Ctf 52 (64)
T d1wfha_ 15 PNRCTVCRKRVGLTGFMCRC--GTTFCGSHRYPEVHGCTF 52 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSS--SCEECTTTCSTTTTTCCC
T ss_pred CCcChhhCCCccceeeeccC--CCEehhhcCCCcCcCCCC
Confidence 45899999999998999998 4689999974 3456653
No 4
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.91 E-value=6.6 Score=31.58 Aligned_cols=36 Identities=25% Similarity=0.632 Sum_probs=28.0
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCE 197 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~ 197 (716)
...|.+|+.-+=|..+.|.| +.++|..|-. +...|.
T Consensus 25 ~~RC~~C~KKl~l~~~~CrC--g~~FC~~HR~pe~H~Ct 61 (74)
T d1wfla_ 25 KNRCFMCRKKVGLTGFDCRC--GNLFCGLHRYSDKHNCP 61 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTT--SCEECSSSCSTTTTTCC
T ss_pred CCcChhhCCcccceeeEccC--CCEehhhcCCCcCcCCC
Confidence 35899999988888899998 4689999963 334454
No 5
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.22 E-value=6.4 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.572 Sum_probs=29.1
Q ss_pred cccccccccccccccccccccCCcceeccchh-hhcCCCC
Q 005048 160 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 160 ereC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
...|..|+.-+-|-.+.|.| +.++|..|-. +...|.-
T Consensus 25 k~RC~~C~KKl~l~~~~CrC--g~~FC~~HR~pe~H~C~f 62 (74)
T d1wfpa_ 25 ATRCLSCNKKVGVTGFKCRC--GSTFCGTHRYPESHECQF 62 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTT--SCEECTTTCSTTTSCCCS
T ss_pred CCcChhcCCccCCCceecCC--CChhhhccCCccCcCCCC
Confidence 46899999999998889998 4789999973 3455653
No 6
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.52 E-value=8.1 Score=31.78 Aligned_cols=37 Identities=24% Similarity=0.575 Sum_probs=28.6
Q ss_pred cccccccccccccc-cccccccCCcceeccchh-hhcCCCC
Q 005048 160 ERECFSCFYDLHLS-AAGCKCSPDRFACLKHAN-IFCSCEI 198 (716)
Q Consensus 160 ereC~iCk~~cyLS-aV~C~C~p~~~~CL~Ha~-~lCsC~~ 198 (716)
...|.+|+.-+-|- .+.|.|. .++|..|-. +...|.-
T Consensus 25 ~~RC~~C~KKl~l~~~~~CrCg--~~FC~~HR~pe~H~Ctf 63 (85)
T d1wffa_ 25 MKHCFLCGKKTGLATSFECRCG--NNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTC--CEECTTTCSTGGGTCCS
T ss_pred CCcChhcCCeecCCcCeecCCC--CEehhhcCCCcCcCCCc
Confidence 35799999999984 6899984 689999974 3456653
No 7
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=20.74 E-value=1.1e+02 Score=24.04 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=44.4
Q ss_pred ceeEEEEEEeeCCCCCceEEEEeCCCCCCeEEcCChhHHHHHHHHHHHHHHHHhcCcccC
Q 005048 513 KVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHER 572 (716)
Q Consensus 513 ~rc~Y~ceIlD~G~~~PlFrVt~ed~P~~~f~g~Spt~cW~~VlkrIn~~i~~r~~~G~~ 572 (716)
++..| +|++.+. .|.|+..|-|+..-.|.|-..|-.++.+.+...+....+.|..
T Consensus 14 ~~~~Y--~iieedg---~y~~~~PDlpgc~t~GdT~eEA~~~a~eAl~~~l~~~~e~g~~ 68 (80)
T d2dsya1 14 ARARY--ELIADEE---PYYGEIPDLPGVWATGKSLKECEANLQAALEDWLLFLLSRGET 68 (80)
T ss_dssp HTCEE--EECSSSS---CEEEECTTSTTCEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhcee--EEEecCC---EEEEEeCCCCcEEecCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34456 4665542 6999999999999999999999999999999998887766653
No 8
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=19.42 E-value=40 Score=26.72 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=34.8
Q ss_pred HHHHHHHHHHh----hhcChHHHHHHHHHhhccCc-chHH--------HHHHHHHHHHHHhh
Q 005048 666 EEAQLVLRGLF----QKASPKELKVMQRILYSEGR-SDEW--------RVALATLIEEIQKS 714 (716)
Q Consensus 666 ~~~~~~l~~~~----~~~~~~el~~~~~~~~~~~~-~~~~--------~~~~~~l~~~~~~~ 714 (716)
-|+..||.+|+ .+.+.+|+..+.++|..+.. .-.| ...++.+++.|+++
T Consensus 21 kElDllL~~F~~~~~~~l~~~el~~f~~lL~~~D~dL~~wl~g~~~~p~~~~~~ii~~Irk~ 82 (82)
T d1puza_ 21 LELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA 82 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSCTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHcCChHHHHHHHhCCCCCCcHHHHHHHHHHHcC
Confidence 46778877775 45799999999999876432 3334 14567788888875
No 9
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.09 E-value=17 Score=26.10 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=25.7
Q ss_pred cccccccccccccccccccCCcceeccchhhhcC
Q 005048 162 ECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCS 195 (716)
Q Consensus 162 eC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~~lCs 195 (716)
.|..|+..+-++.-. -..++++|-.|..+|-.
T Consensus 1 rC~~C~~~Ls~~~ya--s~~G~lYCkpHf~qLF~ 32 (42)
T d2d8ya2 1 RCSYCNNKLSLGTYA--SLHGRIYCKPHFNQLFK 32 (42)
T ss_dssp BCTTTCCBCCTTTCC--CSSSCCCCHHHHHHHSC
T ss_pred CcCcCCCCccCCcch--hhCCEeccHHHHHHHHH
Confidence 489999999888776 24689999999988753
No 10
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.82 E-value=24 Score=34.01 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=32.2
Q ss_pred CCCceEEeeecCCcEEEecCCccccccCC-Ccchhhhccc
Q 005048 18 EGVPVYHVVQHSGEFVLTFPRAYHSGFNC-GFNCAEAVNV 56 (716)
Q Consensus 18 ~GVpVyr~~Q~pGEFVITFPrAYHaGFn~-GfN~aEAVNF 56 (716)
.+++.+.++++||+.++.-|+-||..-|. +-+++=+|||
T Consensus 242 ~~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~ 281 (335)
T d1h2ka_ 242 QNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 281 (335)
T ss_dssp GGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred hcCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence 34678999999999999999999998875 3356667887
Done!