BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005049
         (716 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 514

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/388 (52%), Positives = 268/388 (69%), Gaps = 3/388 (0%)

Query: 7   QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
           +  GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+ +VK W++
Sbjct: 18  KHYGITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77

Query: 67  KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
           +IS +K L   +++    KIFTFGSYRLGVH  GADID LCV PRH  R  DFF   +  
Sbjct: 78  EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136

Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
           L    EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196

Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
            +RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR 
Sbjct: 197 XIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256

Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
           CQLYPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316

Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
           TPAYP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374

Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT 394
           + +  SA        W G VES++R L 
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRILV 402


>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
           3'- Datp And Magnesium Chloride
          Length = 514

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/388 (52%), Positives = 268/388 (69%), Gaps = 3/388 (0%)

Query: 7   QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
           +  GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+ +VK W++
Sbjct: 18  KHYGITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77

Query: 67  KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
           +IS +K L   +++    KIFTFGSYRLGVH  GADID LCV PRH  R  DFF   +  
Sbjct: 78  EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136

Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
           L    EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196

Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
            +RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR 
Sbjct: 197 XIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256

Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
           CQLYPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316

Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
           TPAYP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374

Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT 394
           + +  SA        W G VES++R L 
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRILV 402


>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 513

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/388 (51%), Positives = 265/388 (68%), Gaps = 3/388 (0%)

Query: 7   QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
           +  GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+ +VK W++
Sbjct: 18  KHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77

Query: 67  KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
           +IS +K L   +++    KIFTFGSYRLGVH  GADID LCV PRH  R  DFF   +  
Sbjct: 78  EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136

Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
           L    EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196

Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
            +RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA LVAR 
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAXLVART 256

Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
           CQLYPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHL PII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLXPII 316

Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
           TPAYP  NS+YNVS ST  + ++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRXVXVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374

Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT 394
           + +  SA        W G VES++R L 
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRILV 402


>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed
           Conformation
          Length = 530

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 264/395 (66%), Gaps = 4/395 (1%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKI 63
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L ++ + 
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 64  WVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGEL 123
           +V ++S+ K ++D + ++A  KIFT+GSYRLGVHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 124 HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 243
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 244 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 303
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 304 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 363
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 364 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKV 397
           K YL I      +D+    W G VES++R L +K+
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKL 393


>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
           State
 pdb|2O1P|B Chain B, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
           State
          Length = 546

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 264/395 (66%), Gaps = 4/395 (1%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKI 63
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L ++ + 
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 64  WVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGEL 123
           +V ++S+ K ++D + ++A  KIFT+GSYRLGVHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 124 HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 243
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 244 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 303
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 304 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 363
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 364 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKV 397
           K YL I      +D+    W G VES++R L +K+
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKL 393


>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
 pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
 pdb|3C66|A Chain A, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
           80-105
 pdb|3C66|B Chain B, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
           80-105
          Length = 537

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 264/395 (66%), Gaps = 4/395 (1%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKI 63
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L ++ + 
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 64  WVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGEL 123
           +V ++S+ K ++D + ++A  KIFT+GSYRLGVHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 124 HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 243
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 244 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 303
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 304 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 363
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 364 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKV 397
           K YL I      +D+    W G VES++R L +K+
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKL 393


>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
           Oligo(A)
          Length = 525

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/390 (45%), Positives = 260/390 (66%), Gaps = 4/390 (1%)

Query: 9   LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKI 68
            GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L ++ + +V ++
Sbjct: 3   FGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEV 62

Query: 69  SRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLT 128
           S+ K ++D + ++A  KIFT+GSYRLGVHGPG+DIDTL V P+H TRE DFF     +L 
Sbjct: 63  SKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLR 121

Query: 129 EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTV 188
           E  E+ E+ PVPDA VP++K KFSG+SI L+ ARL    +P  L +S  ++L+N DE+ +
Sbjct: 122 ERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQPQVPLSLTLSDKNLLRNLDEKDL 181

Query: 189 RSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQ 248
           R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LVARICQ
Sbjct: 182 RALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ 241

Query: 249 LYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITP 308
           LYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H MP+ITP
Sbjct: 242 LYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITP 301

Query: 309 AYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLR 368
           AYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  YK YL 
Sbjct: 302 AYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLE 359

Query: 369 IDISAENADDLR-NWKGWVESRLRQLTLKV 397
           I      +D+    W G VES++R L +K+
Sbjct: 360 ITAYTRGSDEQHLKWSGLVESKVRLLVMKL 389


>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A
           Rna Surveillance Complex
          Length = 323

 Score = 38.9 bits (89), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 83  NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDA 142
           +A +  FGSY   ++ PG+DID +           +    L   L +    TE+  V  A
Sbjct: 59  DADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKA 118

Query: 143 HVPVMKF--KFSGVSIDLLYAR 162
            VP++KF    SG+ I + + R
Sbjct: 119 RVPIIKFVEPHSGIHIAVSFER 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,174,864
Number of Sequences: 62578
Number of extensions: 820126
Number of successful extensions: 1669
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 11
length of query: 716
length of database: 14,973,337
effective HSP length: 106
effective length of query: 610
effective length of database: 8,340,069
effective search space: 5087442090
effective search space used: 5087442090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)