BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005049
(716 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 255/542 (47%), Positives = 332/542 (61%), Gaps = 45/542 (8%)
Query: 9 LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKI 68
LG+TEPIS A P+ D + +LE L NL+ES EE+ REE+LG+L+QIV+ W K++
Sbjct: 53 LGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQV 112
Query: 69 SRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLT 128
S KG +Q E AKIFTFGSYRLGVHGPG+DIDTLCVGP+H R DFF +L +L
Sbjct: 113 SLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSDILK 171
Query: 129 EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNADEQT 187
PE+TE V DA VPV+ FSG+ IDL+YA+L+L IPE+L D+ +S L+N DE++
Sbjct: 172 VHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKS 231
Query: 188 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 247
+ SLNGCRVTDQIL+LVP I NFR LRC++ WA RRG+YSN+ GFLGG++WALL ARIC
Sbjct: 232 ILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARIC 291
Query: 248 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLMPII 306
QLYPN+ PS ++ RFF+VY W+WP P+LLC I+EG LG +VW+P+R DK HLMPII
Sbjct: 292 QLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPII 348
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP MNS+YNVS STL++M EF RG EI +E E W L E FF Y Y
Sbjct: 349 TPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFY 406
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLTLKVNATTLHTWLFAF---FTSIKRKQGVP--- 420
+ ID + N +D R W+GW+ES+LR L + +T + + FT+ K P
Sbjct: 407 IEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVPYPKGFTNNLHKANNPDQI 466
Query: 421 ---------------VGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRNL 462
G + D+ V EF + + +P M I V ++ ++ L
Sbjct: 467 CTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQL 526
Query: 463 PNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCH 522
P FV G P P K T +K SS +P A ++K +N D L + K
Sbjct: 527 PAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNSPKSP 573
Query: 523 AT 524
T
Sbjct: 574 IT 575
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/484 (44%), Positives = 299/484 (61%), Gaps = 28/484 (5%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
+ GIT PISLA P + D + T+KL ++ ++E +EE R VLG+L+ +VK W+
Sbjct: 17 KHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWIS 76
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
IS +K L ++ KIFTFGSYRLGVH GADID LCV PRH R DFF +
Sbjct: 77 DISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEK 135
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L + L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D +
Sbjct: 136 LKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIR 195
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR
Sbjct: 196 CIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVART 255
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 256 CQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPII 315
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y
Sbjct: 316 TPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHY 373
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT-----------LKVNATTL---------HTWL 406
+ + SA ++ W G VES++R L VN + + ++
Sbjct: 374 IVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYV 433
Query: 407 FAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNL 462
+F I ++ V E D+ ++ F V + + K GM+I HV ++ L
Sbjct: 434 SMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQL 492
Query: 463 PNFV 466
+++
Sbjct: 493 HHYL 496
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/484 (43%), Positives = 299/484 (61%), Gaps = 28/484 (5%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
+ GIT PISLA P + D + T+KL ++ ++E +EE R VLG+L+ +VK W+
Sbjct: 17 KHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWIS 76
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
+S +K L ++ KIFTFGSYRLGVH GADID LCV PRH R DFF +
Sbjct: 77 DVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEK 135
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L + L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D +
Sbjct: 136 LKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIR 195
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR
Sbjct: 196 CIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVART 255
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 256 CQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPII 315
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y
Sbjct: 316 TPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHY 373
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT-----------LKVNATTL---------HTWL 406
+ + SA ++ W G VES++R L VN + + ++
Sbjct: 374 IVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYV 433
Query: 407 FAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNL 462
+F I ++ V E D+ ++ F V + + K GM+I HV ++ L
Sbjct: 434 SMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQL 492
Query: 463 PNFV 466
+++
Sbjct: 493 HHYL 496
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/384 (52%), Positives = 267/384 (69%), Gaps = 3/384 (0%)
Query: 10 GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKIS 69
GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+ +VK W+++IS
Sbjct: 21 GITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80
Query: 70 RAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129
+K L +++ KIFTFGSYRLGVH GADID LCV PRH R DFF + L
Sbjct: 81 ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139
Query: 130 MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 189
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 199
Query: 190 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 249
SLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 250 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 309
YPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 310 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 369
YP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377
Query: 370 DISAENADDLRNWKGWVESRLRQL 393
SA W G VES++R L
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRIL 401
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/387 (52%), Positives = 268/387 (69%), Gaps = 3/387 (0%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
+ GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+ +VK W++
Sbjct: 18 KHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
+IS +K L +++ KIFTFGSYRLGVH GADID LCV PRH R DFF +
Sbjct: 78 EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374
Query: 367 LRIDISAENADDLRNWKGWVESRLRQL 393
+ + SA W G VES++R L
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRIL 401
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/387 (52%), Positives = 268/387 (69%), Gaps = 3/387 (0%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
+ GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+ +VK W++
Sbjct: 18 KHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
+IS +K L +++ KIFTFGSYRLGVH GADID LCV PRH R DFF +
Sbjct: 78 EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374
Query: 367 LRIDISAENADDLRNWKGWVESRLRQL 393
+ + SA W G VES++R L
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRIL 401
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 242/597 (40%), Positives = 340/597 (56%), Gaps = 72/597 (12%)
Query: 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKK 67
R G++ PISLA P + D + T++L + LR ++E +EE R VL +L+ +VK W+++
Sbjct: 19 RYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIRE 78
Query: 68 ISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQML 127
IS +K L +++ KIFTFGSYRLGVH GADID LCV P H R DFF + L
Sbjct: 79 ISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKL 137
Query: 128 TEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQT 187
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 138 KLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRC 197
Query: 188 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 247
+RSLNGCRVTD+IL LVP I NFR TLR ++ WAK +YSN+ GFLGG++WA+LVAR C
Sbjct: 198 IRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTC 257
Query: 248 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIIT 307
QLYPNAV S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIIT
Sbjct: 258 QLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIIT 317
Query: 308 PAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYL 367
PAYP NS+YNVS ST +M++EF++G I + ++A +W LFE +FF+ YK+Y+
Sbjct: 318 PAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYI 375
Query: 368 RIDISAENADDLRNWKGWVESRLRQLTLKVNATTLHTWLFAFFTSIKRKQGVP------- 420
+ SA W G VES++R L + T S + P
Sbjct: 376 VLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDMEEFRT 435
Query: 421 ---VGEGEQ-------------FDIR-LTVKEFKQAVS--MYTLRKPGMQISVAHVTRRN 461
+G G + +DI+ T ++QAV+ M+ + GM+I+ H+ R+
Sbjct: 436 MWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM---GMKITAMHLRRKE 492
Query: 462 LPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKC 521
L + L V K + +GR+ TD N + +A C
Sbjct: 493 L---------------------HQLLPHHVLQDKKAHSTEGRRL--TDLNDSSFDLSAGC 529
Query: 522 HATM--PSSSGEFREG----------SPIMSTISSSSINLQ-----FEHMDANELAG 561
+M PSS+ + G SP ++ +++S N+Q + ++ NE +G
Sbjct: 530 ENSMSVPSSTSTMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSG 586
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/388 (51%), Positives = 266/388 (68%), Gaps = 3/388 (0%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
++ GI+ PISLA P D D T+KL + L+ ++E +EE R +L +L+ +VK W++
Sbjct: 18 KQFGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKEWIR 77
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
+IS ++ L +++ KIFTFGSYRLGVH GADID LCV PRH R DFF +
Sbjct: 78 EISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSFYDK 136
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAK +YSN+ GFLGG++WA+LVAR
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVART 256
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPII 316
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVS ST +M++EF++G I + N+A +W LFE +FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHY 374
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT 394
+ + SA W G VES++R L
Sbjct: 375 IVLLASAPTEKQHLEWVGLVESKIRILV 402
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/388 (51%), Positives = 263/388 (67%), Gaps = 5/388 (1%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
+ GIT PISLA D D +KL + L+ ++E +E+ R +LG+L+ +VK W++
Sbjct: 2 KTFGITSPISLAAAKDTDCTLMQKLIETLKPYGVFEEEEQLQHR--ILGKLNNLVKEWIR 59
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
+IS K L +++ KIFTFG YRLGVH GADID LCV PRH R DFF +
Sbjct: 60 EISELKHLPQSVIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYDK 118
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 119 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 178
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 179 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 238
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 239 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 298
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK+Y
Sbjct: 299 TPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHY 356
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLT 394
+ + SA W G VES++R L
Sbjct: 357 ILLLASAPTEKQRLEWVGLVESKIRILV 384
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/391 (49%), Positives = 272/391 (69%), Gaps = 3/391 (0%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
++ GIT PIS A T+ + L L++ NL+ES E+ R +VL L QI +VK
Sbjct: 4 KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVK 63
Query: 67 KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
K+S AK +N+++ EA KIFT+GSYRLGV+GPG+DIDTL V P+H +R+ +FF +L M
Sbjct: 64 KVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPM 122
Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
L E EVT+L VPDA+VP++KFKF G+SIDL++ARLS+ +P DL++S +++L+ +E+
Sbjct: 123 LREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEER 182
Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
V SLNG RVTDQIL+LVP F+ LR ++FWA+RR +Y+NV GF GG+ WA++VARI
Sbjct: 183 CVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARI 242
Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
CQLYPNAV S++V++FFR+ QW WP P+LL IE+G L +++W+P+ P DK H MPII
Sbjct: 243 CQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPII 302
Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
TPAYP M +++N++ ST I++ E R EI + + + W LF+ FF YK+Y
Sbjct: 303 TPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKA--LPWSALFQKHDFFHRYKHY 360
Query: 367 LRIDISAENADDLRNWKGWVESRLRQLTLKV 397
L I +A+ A+ W G VES+LR L ++
Sbjct: 361 LTITAAAKTAEAQLKWAGLVESKLRHLVTRL 391
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/394 (46%), Positives = 275/394 (69%), Gaps = 4/394 (1%)
Query: 5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIW 64
N + G+TEPIS GPT + + L + L++ +ES++ R EVL ++V+ +
Sbjct: 2 NTKTYGVTEPISTNGPTPKENILNDALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEF 61
Query: 65 VKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELH 124
V +S++K ++D + Q+A K+FTFGSYRLGV+GPG+DIDTL V P+H TR+ DFF
Sbjct: 62 VYTVSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFA 120
Query: 125 QMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 184
++ + PE+ E+ VPDA+VP++K +F G+SIDL+ ARL++ +P DL + ++L+N D
Sbjct: 121 DIIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLD 180
Query: 185 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 244
E+ +RSLNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVA
Sbjct: 181 EKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVA 240
Query: 245 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 304
RICQLYPNAV S +V +FF +YT+W WP PVLL +IE+G L ++VW+PR P D+ H MP
Sbjct: 241 RICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMP 300
Query: 305 IITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 364
+ITPAYP M +++N+++ST ++++ E RG I + + + W LFE +FF YK
Sbjct: 301 VITPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKK--TWSDLFEKHSFFYKYK 358
Query: 365 NYL-RIDISAENADDLRNWKGWVESRLRQLTLKV 397
YL + S ++A++ + W G++ES+LRQL LK+
Sbjct: 359 FYLCVVAASIDSAEEHKKWSGFIESKLRQLVLKL 392
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/364 (53%), Positives = 253/364 (69%), Gaps = 4/364 (1%)
Query: 2 GSSNGQR-LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQI 60
GS Q+ GIT PISLA P D D T+KL + L+ ++E ++E R LG+L+ +
Sbjct: 9 GSQQSQKTYGITSPISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLNNL 68
Query: 61 VKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFF 120
VK W+++IS K L +++ KIFTFGSYRLGVH GADID LCV PRH R D F
Sbjct: 69 VKEWIREISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLF 127
Query: 121 GELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSIL 180
++ L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L
Sbjct: 128 SSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLL 187
Query: 181 QNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWA 240
+N D + +RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA
Sbjct: 188 KNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWA 247
Query: 241 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 300
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 248 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 307
Query: 301 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 360
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 308 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKA--EWSKLFDAPNFF 365
Query: 361 EAYK 364
+ YK
Sbjct: 366 QKYK 369
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/395 (45%), Positives = 264/395 (66%), Gaps = 4/395 (1%)
Query: 4 SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKI 63
S+ + GIT P+S G T + L + L+ +E+++E +R +VL L ++ +
Sbjct: 2 SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61
Query: 64 WVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGEL 123
+V ++S+ K ++D + ++A KIFT+GSYRLGVHGPG+DIDTL V P+H TRE DFF
Sbjct: 62 FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120
Query: 124 HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183
+L E E+ E+ PVPDA VP++K KFSG+SIDL+ ARL +P L +S ++L+N
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180
Query: 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 243
DE+ +R+LNG RVTD+IL LVPK FR LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240
Query: 244 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 303
ARICQLYPNA +++++RFF + ++W WP PV+L IE+G L ++VW+P+ +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300
Query: 304 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 363
P+ITPAYP M +++N++ ST ++++ EF RG +I + N+ W LFE FF Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358
Query: 364 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKV 397
K YL I +D+ W G VES++R L +K+
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKL 393
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/395 (45%), Positives = 263/395 (66%), Gaps = 6/395 (1%)
Query: 5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIW 64
N Q G+T PIS+A T + L K L+ +ES+ R EVL L + + +
Sbjct: 2 NNQAYGVTPPISVANSTPKENELNDSLIKELKSRGSFESETATKKRVEVLNILQSMTEEF 61
Query: 65 VKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELH 124
V K+S K +++ + ++ KIFTFGSYRLGV+GPG+DIDTL V P+H +R DFF +
Sbjct: 62 VYKVSIKKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRN-DFFEVFY 120
Query: 125 QMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 184
++L E+ E+ PVPDA VP++K +F+G+SIDL++ARL + +P DL + ++L+N D
Sbjct: 121 ELLKGRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNID 180
Query: 185 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 244
E+ +R+LNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVA
Sbjct: 181 EKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVA 240
Query: 245 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 304
RICQLYPNAV +++V +FF +Y+QW WP PVLL IE+G L ++VW+PR D+ H MP
Sbjct: 241 RICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMP 300
Query: 305 IITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 364
+ITPAYP M +++N+++ST ++++ EFQRG E+ + N W L E FF YK
Sbjct: 301 VITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDI--NVGKKSWSDLLERHDFFFRYK 358
Query: 365 NYLRIDISAEN--ADDLRNWKGWVESRLRQLTLKV 397
YL I + + A+ L+ + G VES+LR L K+
Sbjct: 359 FYLCIVAATRSTYAEHLK-YSGMVESKLRLLVQKL 392
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 192/368 (52%), Gaps = 18/368 (4%)
Query: 30 KLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKIS-RAKGLNDQLLQEANAKIFT 88
+L+++L ++Y ++ + + + ++ + ++ W KKI + G+ D +A A I+
Sbjct: 4 ELKEFLVKNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKA-ATIYV 62
Query: 89 FGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMK 148
+GSYRL V+G +DID V TR+ DF+ L+ L P+V EL +P P +
Sbjct: 63 YGSYRLNVYGNNSDIDACIVSNSTITRD-DFYDGLYAELLNNPDVKELKQIPSKRSPHLS 121
Query: 149 FKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKI- 207
+ + DL ++R + +P++LDI ++IL+N DE R++NG R TD I VP
Sbjct: 122 MIYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHS 181
Query: 208 -QNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVY 266
+ FR +R ++ W K+RG+Y V FL GI+ +LVA++ L+ +FF+VY
Sbjct: 182 EEAFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVY 241
Query: 267 TQWRW-PNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 325
+ W W PV+L ++ N K K ++ I+TPA P N++++++ +L
Sbjct: 242 SSWDWLRTPVMLGTNDDF-----------NDKKKEGVIQILTPASPSENAAFSITKFSLE 290
Query: 326 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 385
++ E +RG EI +E DW LF+P F Y ++ +++ + + L G
Sbjct: 291 MIKRELKRGQEIVHEF-SSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGK 349
Query: 386 VESRLRQL 393
ES L L
Sbjct: 350 FESGLVNL 357
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 105/153 (68%), Gaps = 2/153 (1%)
Query: 241 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 300
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 301 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 360
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFF 118
Query: 361 EAYKNYLRIDISAENADDLRNWKGWVESRLRQL 393
+ YK+Y+ + SA W G VES++R L
Sbjct: 119 QKYKHYILLLASAPTEKQRLEWVGLVESKIRIL 151
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 39/195 (20%)
Query: 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDA 142
+A + FGSY ++ PG+DID + + L L + TE+ V A
Sbjct: 217 DADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKA 276
Query: 143 HVPVMKF--KFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQI 200
VP++KF SG+ ID+ + R NG I
Sbjct: 277 RVPIIKFVEPHSGIHIDVSFER----------------------------TNGIEAAKLI 308
Query: 201 LRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPS---- 256
+ R + ++ + R + + G LGG + LV ++P + +
Sbjct: 309 REWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDP 368
Query: 257 -----MLVSRFFRVY 266
+L+ FF +Y
Sbjct: 369 KDNLGVLLIEFFELY 383
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 34/183 (18%)
Query: 74 LNDQLLQE-ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATR--EEDFFGELHQMLTEM 130
+N +LQ+ + ++ FGS+ ++ P +D+D + + P H R ++D F H L ++
Sbjct: 269 INQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHH-LKKL 327
Query: 131 PEVTELHPVPDAHVPVMKF--KFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTV 188
+E+ + A+VP++KF + V +D+ + +
Sbjct: 328 KLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPG------------------------ 363
Query: 189 RSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQ 248
L C V + ++ P + R + ++ + R + G L LV Q
Sbjct: 364 -GLKTCLVVNGFMKKYPAL---RPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQ 419
Query: 249 LYP 251
L+P
Sbjct: 420 LHP 422
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 35/189 (18%)
Query: 81 EANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP 140
E KI FGSYR G+ +D+D + + A ++ + ++ E + + P+
Sbjct: 919 EGPVKIACFGSYRTGLMTKNSDLDLVIYSSKEALLP--YYDRVKSIIKN--EFSNVMPIR 974
Query: 141 DAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQI 200
A +P++KF + I DL + N+D SL RV
Sbjct: 975 GARIPIIKFT-------------GQYNIHCDLSFDNLLPIHNSDLILNYSLIDERV---- 1017
Query: 201 LRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVS 260
+T L +++WA R + F W ++V Y +P ++
Sbjct: 1018 ----------KTLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVI----FYLQQIPEPILP 1063
Query: 261 RFFRVYTQW 269
++ TQ+
Sbjct: 1064 NLQKLSTQY 1072
>sp|Q3AW11|TRPB_SYNS9 Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902)
GN=trpB PE=3 SV=1
Length = 418
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 26/176 (14%)
Query: 35 LRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRL 94
+RD + QE EE GRL ++ V S A GL +Q+ + ++ +
Sbjct: 225 VRDFHAVIGQEAKQQCEEAFGRLPDVLMACVGGGSNAMGLFHPFVQDTSVRL-------I 277
Query: 95 GVHGPGADIDTLCVGPRH-ATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSG 153
GV G ++T PRH AT E G LH ++ + + ++ V +AH + G
Sbjct: 278 GVEAAGDGVNT----PRHAATITEGRAGVLHGAMSLLLQDSDGQ-VQEAHSISAGLDYPG 332
Query: 154 VSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQN 209
V + Y + +I + DEQ +L+G R+ ++ ++P ++
Sbjct: 333 VGPEHSYLK----------EIGRAEYAAVTDEQ---ALDGLRLVSELEGIIPALET 375
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDA 142
+A + FGSY ++ PG+DID + ++ L L T++ + A
Sbjct: 233 DANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIAKA 292
Query: 143 HVPVMKF--KFSGVSIDLLYAR 162
VP++KF S + IDL + R
Sbjct: 293 RVPIIKFVEPASQIHIDLSFER 314
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPD 141
++A + FGS+ ++ PG+DID + + ++ EL + L + +
Sbjct: 213 SDADLHVFGSFATDLYLPGSDIDCVVNSRNRDKEDRNYIYELARHLKNKGLAIRMEVIVK 272
Query: 142 AHVPVMKF--KFSGVSIDLLYAR 162
VP++KF S + ID+ + R
Sbjct: 273 TRVPIIKFIEPQSQLHIDVSFER 295
>sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=aroB PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 159 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQIL 201
L A + LW I +DLD S DSIL+NA++ S C V QI+
Sbjct: 190 LIADVELWEILKDLDGSTDSILENAEKIIYHS---CNVKRQIV 229
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 52 EVLGRLDQIVKIWVKKISRAKGLNDQLLQEAN 83
E LG+++ +K+W+K+ + N+QLL+EA+
Sbjct: 248 ETLGKIEDCMKVWIKQTEQVLAENNQLLKEAD 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,827,192
Number of Sequences: 539616
Number of extensions: 11618854
Number of successful extensions: 29410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 28981
Number of HSP's gapped (non-prelim): 155
length of query: 716
length of database: 191,569,459
effective HSP length: 125
effective length of query: 591
effective length of database: 124,117,459
effective search space: 73353418269
effective search space used: 73353418269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)