Query 005049
Match_columns 716
No_of_seqs 253 out of 716
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 4E-116 1E-120 981.0 45.7 469 7-478 18-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 3E-111 1E-115 944.5 50.1 461 6-472 4-527 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 5.2E-50 1.8E-54 425.7 24.5 279 28-356 13-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 1.2E-50 4E-55 434.3 18.6 288 1-338 1-348 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 4.3E-48 1.5E-52 422.1 26.4 303 8-363 25-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 6.6E-48 2.3E-52 409.0 22.3 265 26-341 20-299 (323)
7 2b4v_A RNA editing complex pro 100.0 3.1E-39 1.1E-43 357.7 22.2 302 19-342 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 3.8E-37 1.3E-41 332.7 21.8 280 26-357 6-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 1.6E-35 5.4E-40 327.2 26.3 234 28-340 135-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 1.2E-09 4E-14 120.4 26.5 293 30-407 6-318 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 8.8E-09 3E-13 109.9 25.3 271 29-328 9-320 (349)
12 4at7_A Interleukin enhancer-bi 98.0 0.0011 3.9E-08 71.3 23.2 268 19-338 19-295 (364)
13 1no5_A Hypothetical protein HI 97.1 0.002 6.7E-08 58.1 8.9 44 84-129 28-71 (114)
14 2rff_A Putative nucleotidyltra 96.9 0.0012 4.2E-08 59.7 6.5 53 48-112 10-62 (111)
15 4at7_B NF90, interleukin enhan 96.9 0.094 3.2E-06 57.0 21.6 264 39-338 22-327 (383)
16 1wot_A Putative minimal nucleo 96.9 0.0013 4.4E-08 57.9 5.8 49 52-113 7-55 (98)
17 1ylq_A Putative nucleotidyltra 96.5 0.0071 2.4E-07 52.9 7.7 28 84-111 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.3 0.044 1.5E-06 56.7 5.6 55 46-112 15-69 (272)
19 2fmp_A DNA polymerase beta; nu 94.2 0.32 1.1E-05 51.8 12.4 117 82-233 171-298 (335)
20 1kny_A Kntase, kanamycin nucle 93.8 0.052 1.8E-06 55.3 5.0 30 84-113 32-61 (253)
21 2bcq_A DNA polymerase lambda; 92.8 0.52 1.8E-05 50.3 11.0 116 82-233 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 91.4 0.31 1.1E-05 51.1 7.1 101 38-164 12-116 (287)
23 1jaj_A DNA polymerase beta-lik 90.6 0.37 1.3E-05 47.1 6.3 114 76-233 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 90.1 1.3 4.5E-05 47.6 10.6 51 82-134 175-225 (360)
25 1jms_A Terminal deoxynucleotid 86.3 4.2 0.00015 44.0 11.6 53 82-135 195-248 (381)
26 3b0x_A DNA polymerase beta fam 82.9 7.3 0.00025 44.1 12.1 107 83-234 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 66.7 7.5 0.00026 42.7 6.4 48 82-129 153-208 (440)
28 2fcl_A Hypothetical protein TM 53.7 45 0.0015 31.9 8.5 72 81-161 31-107 (169)
29 3k7d_A Glutamate-ammonia-ligas 53.0 26 0.00089 39.3 7.7 48 82-129 233-289 (498)
30 2pbe_A AAD6, aminoglycoside 6- 51.8 20 0.00069 37.2 6.2 75 85-164 25-110 (294)
31 2w9m_A Polymerase X; SAXS, DNA 39.5 47 0.0016 37.6 7.2 94 86-234 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.7e-116 Score=980.99 Aligned_cols=469 Identities=45% Similarity=0.810 Sum_probs=437.9
Q ss_pred CcccccCCCCCCCCChHHHHhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEE
Q 005049 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKI 86 (716)
Q Consensus 7 ~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI 86 (716)
++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|+++++.++|++++++..++++|
T Consensus 18 ~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v 97 (514)
T 1q79_A 18 KHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKI 97 (514)
T ss_dssp -CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEE
T ss_pred cccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeecccc
Q 005049 87 FTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 166 (716)
Q Consensus 87 ~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~~ 166 (716)
++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+||+++..
T Consensus 98 ~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~ 176 (514)
T 1q79_A 98 FTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQ 176 (514)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCS
T ss_pred EEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcc
Confidence 999999999999999999999999999984 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHH
Q 005049 167 VIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246 (716)
Q Consensus 167 ~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~v 246 (716)
.+|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||++
T Consensus 177 ~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~ 256 (514)
T 1q79_A 177 TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256 (514)
T ss_dssp SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHH
T ss_pred cCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHH
Q 005049 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRI 326 (716)
Q Consensus 247 cQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~v 326 (716)
||+||++++++||.+||++|++|+|++||+++.+++|.+++++|+|+.+++|++|+|||+||++|++|+|+||+.+|+++
T Consensus 257 ~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~ 336 (514)
T 1q79_A 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMV 336 (514)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999998999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCcccccCCcchhhhccceEEEEeeecChhhhhchhhHHHHHHHHHHHHhhcCCCc---
Q 005049 327 MMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVNATTLH--- 403 (716)
Q Consensus 327 I~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~--- 403 (716)
|++||+||+++|+++..++. +|++||++++||.+|+|||+|++++.+++++.+|.||||||||.|+.+||+....
T Consensus 337 I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~~i~~a 414 (514)
T 1q79_A 337 MVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLA 414 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCCCceee
Confidence 99999999999999998887 9999999999999999999999999999999999999999999999999985421
Q ss_pred -----------------ceeEEEEEeccccC---CCCCCCCceechHHHHHHHHHHHHhhccCCCCcEEEEEEeccCCCC
Q 005049 404 -----------------TWLFAFFTSIKRKQ---GVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLP 463 (716)
Q Consensus 404 -----------------~~~~~ffIGL~~~~---~~~~~~~~~~di~~~v~eF~~~v~~~~~~~~~m~i~v~~vkr~~LP 463 (716)
.|+++|||||.++. ......+.++||+.++++|++.|++|..|++||+|+|+|||+++||
T Consensus 415 ~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp 494 (514)
T 1q79_A 415 HVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLH 494 (514)
T ss_dssp EECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHG
T ss_pred ecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCc
Confidence 16789999999865 2222345679999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCCCC
Q 005049 464 NFVFPGGVRPSRPSK 478 (716)
Q Consensus 464 ~~v~~~~~~~~~~~~ 478 (716)
++||++|.+++|++.
T Consensus 495 ~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 495 QLLPSHVLQKKKKHS 509 (514)
T ss_dssp GGCC-----------
T ss_pred hhhcchhccCCCCCC
Confidence 999999998887644
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=2.9e-111 Score=944.46 Aligned_cols=461 Identities=41% Similarity=0.759 Sum_probs=439.1
Q ss_pred CCcccccCCCCCCCCChHHHHhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcE
Q 005049 6 GQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAK 85 (716)
Q Consensus 6 ~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~ak 85 (716)
.++||||+|||+++||++|++.+.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++++++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccc
Q 005049 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (716)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (716)
|++||||++|+|+|+||||++|++|.++++ ++||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~-~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTR-EDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCH-HHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCH-HHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 999999999999999999999999999998 4999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHH
Q 005049 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 245 (716)
Q Consensus 166 ~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~ 245 (716)
.++|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHH
Q 005049 246 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 325 (716)
Q Consensus 246 vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~ 325 (716)
+||+||++++++||.+||++|++|||++||+++++++|.+++++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999998888888999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCcccccCCcchhhhccceEEEEeeec-ChhhhhchhhHHHHHHHHHHHHhhcCCC--
Q 005049 326 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAE-NADDLRNWKGWVESRLRQLTLKVNATTL-- 402 (716)
Q Consensus 326 vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~-- 402 (716)
+|++||+||+++|+++..++. +|.+||++++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+...
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~~~i~ 400 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIK 400 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcccCce
Confidence 999999999999999988777 99999999999999999999999998 9999999999999999999999998421
Q ss_pred ---------------------------------------------------------cceeEEEEEeccccCCCCCCCCc
Q 005049 403 ---------------------------------------------------------HTWLFAFFTSIKRKQGVPVGEGE 425 (716)
Q Consensus 403 ---------------------------------------------------------~~~~~~ffIGL~~~~~~~~~~~~ 425 (716)
..++++|||||.++.. ..++
T Consensus 401 ~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~ 477 (530)
T 2hhp_A 401 IAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKE 477 (530)
T ss_dssp EEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CC
T ss_pred eeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCc
Confidence 1145789999998743 2357
Q ss_pred eechHHHHHHHHHHHHhhcc-CCCC-cE-EEEEEeccCCCCCCcCCCCCC
Q 005049 426 QFDIRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRNLPNFVFPGGVR 472 (716)
Q Consensus 426 ~~di~~~v~eF~~~v~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~~~~ 472 (716)
++||+.++++|++.|++|.. |++| |+ |.|+|||+++||++||++|++
T Consensus 478 ~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~ 527 (530)
T 2hhp_A 478 KVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEK 527 (530)
T ss_dssp CCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSC
T ss_pred eEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCc
Confidence 89999999999999999999 8887 78 999999999999999997753
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=5.2e-50 Score=425.72 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=225.7
Q ss_pred hHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceE
Q 005049 28 TRKLEKYLRDV--NLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (716)
Q Consensus 28 t~eL~~~L~~~--~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~ 105 (716)
+++|.+++.+. .+-||++|.++|++++++|+++++++. ++++|++||||++|+++|+||||+
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 76 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 76 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 34555655431 356999999999999999999998631 368999999999999999999999
Q ss_pred EEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEec-------CeeeeEEeeeccccccCCCCCCCchh
Q 005049 106 LCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFS-------GVSIDLLYARLSLWVIPEDLDISQDS 178 (716)
Q Consensus 106 lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~-------GI~iDLsfa~l~~~~ip~~ldl~~d~ 178 (716)
+|+.|.....+ .++..+...+.+ ...+++.|.+|+||||||.+. |+.|||+|++.
T Consensus 77 ~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~--------------- 138 (349)
T 4fh3_A 77 CVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR--------------- 138 (349)
T ss_dssp EEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCH---------------
T ss_pred EEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCcc---------------
Confidence 99999888764 666666655554 345788899999999999973 68999998664
Q ss_pred hhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHhh------CCC
Q 005049 179 ILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL------YPN 252 (716)
Q Consensus 179 lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl------yPn 252 (716)
+|+|+++.|.++++..++||.++++||+|||+||||+++.|+||||+|+|||+++||. +|+
T Consensus 139 -------------~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~ 205 (349)
T 4fh3_A 139 -------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 205 (349)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred -------------hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCch
Confidence 6899999999999999999999999999999999999999999999999999999995 232
Q ss_pred --------------------------------CCHHHHHHHHHHhhc-cCCCCCceeecccccCCCC--ccccC------
Q 005049 253 --------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSLG--LQVWD------ 291 (716)
Q Consensus 253 --------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~~~--~~vWd------ 291 (716)
.++++||.+||+||+ +|||++.|+......+... .+.|.
T Consensus 206 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~ 285 (349)
T 4fh3_A 206 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 285 (349)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------
T ss_pred hhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccccc
Confidence 368999999999999 7999999875443333221 13343
Q ss_pred -CCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHccCCCCCcccccCC
Q 005049 292 -PRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 356 (716)
Q Consensus 292 -P~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep 356 (716)
+..+.....+.|+|+||++|++|+|++|+..++..|++||+||+++|++.. .+.+|++||+.
T Consensus 286 ~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~---~~~~~~~lfe~ 348 (349)
T 4fh3_A 286 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS---YPIPYDSLFEE 348 (349)
T ss_dssp ---------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS---SSCCGGGGGSC
T ss_pred CcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc---cCCCHHHHhhc
Confidence 332333445789999999999999999999999999999999999987522 23489999986
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.2e-50 Score=434.28 Aligned_cols=288 Identities=18% Similarity=0.254 Sum_probs=225.0
Q ss_pred CCCCCC---CcccccCCCCCCCCChHHHHhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 005049 1 MGSSNG---QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQ 77 (716)
Q Consensus 1 ~~~~~~---~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~ 77 (716)
|||+.- ..-|++++++.++|+++++ +++|++++++ ++++.+|.+.|++++++|++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~------------- 63 (353)
T 2ikf_A 1 MGSSHHHHHHSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV------------- 63 (353)
T ss_dssp ----------------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH-------------
T ss_pred CCCccccccccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH-------------
Confidence 666443 3459999999999999987 7899999986 5688899999999999999999862
Q ss_pred hhhccCcEEEEeeeec-cCCCCCCCCceEEEecCCCCCc--------------hhhHHHHHHHHHhcCCCceeeEeecCC
Q 005049 78 LLQEANAKIFTFGSYR-LGVHGPGADIDTLCVGPRHATR--------------EEDFFGELHQMLTEMPEVTELHPVPDA 142 (716)
Q Consensus 78 ~~~~~~akI~~FGSy~-lGv~~p~SDID~lcv~P~~v~r--------------~e~Ff~~l~~~L~~~~~V~~l~~V~~A 142 (716)
.++++|++||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++...+.+++.|.+|
T Consensus 64 ---~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~A 140 (353)
T 2ikf_A 64 ---DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRT 140 (353)
T ss_dssp ---CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred ---CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEeccc
Confidence 2468999999997 9999999999999988742210 026888899999987778899999999
Q ss_pred cccEEEEEe-cCeeeeEEeeeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHH
Q 005049 143 HVPVMKFKF-SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWA 221 (716)
Q Consensus 143 rVPIIKf~~-~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WA 221 (716)
+||||||++ .||+|||+|++. +|++.++.|..++...++||.++++||+||
T Consensus 141 rVPIiK~~~~~~i~~Dis~~n~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa 192 (353)
T 2ikf_A 141 RVPVVRVKGGGAVDFDITAYRR----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWS 192 (353)
T ss_dssp SSCEEEEECSSSCEEEEEESCC----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCcEEEEEecCc----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 999999999 689999999764 589999999999999999999999999999
Q ss_pred HHhCCCCCCC-CccchHHHHHHHHHHHhhC------C------------------------CCCHHHHHHHHHHhhc-cC
Q 005049 222 KRRGVYSNVA-GFLGGINWALLVARICQLY------P------------------------NAVPSMLVSRFFRVYT-QW 269 (716)
Q Consensus 222 K~RGIysn~~-G~LGG~swaLLVa~vcQly------P------------------------nas~~~LL~~FF~~Ys-~w 269 (716)
|+||||+++. |+||||+|+|||+++||.. | +.++++||.+||+||+ +|
T Consensus 193 ~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~f 272 (353)
T 2ikf_A 193 KQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEF 272 (353)
T ss_dssp HHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhcccc
Confidence 9999999999 9999999999999999852 3 2357999999999999 89
Q ss_pred CCCCceeecccccCC-C--CccccCCC------CCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 005049 270 RWPNPVLLCAIEEGS-L--GLQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEIC 338 (716)
Q Consensus 270 dW~~pV~L~~i~~G~-~--~~~vWdP~------~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~EF~RA~~Il 338 (716)
||.++|+. +..|. . ..+.|+++ .++.++.+.|+|+||++|.+|+|++|+.+++..|++||+||++++
T Consensus 273 d~~~~vIs--i~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 273 DSDKQVIS--LNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp CTTTEEEC--SSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred CcCceEEE--cCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999764 23332 2 12468642 122335678999999999999999999999999999999999976
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=4.3e-48 Score=422.12 Aligned_cols=303 Identities=18% Similarity=0.223 Sum_probs=240.2
Q ss_pred cccccCCCCCCCCChHHHHhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEE
Q 005049 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIF 87 (716)
Q Consensus 8 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~ 87 (716)
-.|..++-|.+...+..-+++++|.+++.. +.||++|.++|++++++|+++++++. ++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~ 86 (405)
T 4e8f_A 25 NLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELV 86 (405)
T ss_dssp -------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEE
T ss_pred cccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEE
Confidence 356666666666666666888999999886 77999999999999999999998752 368999
Q ss_pred EeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe---c----CeeeeEEe
Q 005049 88 TFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF---S----GVSIDLLY 160 (716)
Q Consensus 88 ~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~---~----GI~iDLsf 160 (716)
+|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..+++.|.+|+||||||.+ . ||+|||+|
T Consensus 87 ~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 87 AFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp EESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred EEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEee
Confidence 99999999999999999999998765543 6889999999986 6789999999999999995 4 99999999
Q ss_pred eeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHH
Q 005049 161 ARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWA 240 (716)
Q Consensus 161 a~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 240 (716)
++. +|++.+..|..++...++||.++++||+|||+||||+++.|+||||+|+
T Consensus 164 ~n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~ 215 (405)
T 4e8f_A 164 NNR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYV 215 (405)
T ss_dssp SCH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHH
T ss_pred ccc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHH
Confidence 764 4677788888887778999999999999999999999999999999999
Q ss_pred HHHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHhhc-cCCCCCceeecccc
Q 005049 241 LLVARIC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE 281 (716)
Q Consensus 241 LLVa~vc-Ql-----yPn--------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~ 281 (716)
|||+++| |. +|+ .++++||..||+||+ +|||.+.|+....
T Consensus 216 lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~- 294 (405)
T 4e8f_A 216 LMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRR- 294 (405)
T ss_dssp HHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSS-
T ss_pred HHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEec-
Confidence 9999999 73 232 478999999999999 9999998865321
Q ss_pred cC-CCC--ccccCCCCC-------CCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHccCCCCCcc
Q 005049 282 EG-SLG--LQVWDPRRN-------PKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWD 351 (716)
Q Consensus 282 ~G-~~~--~~vWdP~~~-------~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~ 351 (716)
.| .+. .+.|....+ ...+.+.|+|+||++|.+|+|++|+..++..|++||+||+++|+.... +.+|+
T Consensus 295 ~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~---~~~w~ 371 (405)
T 4e8f_A 295 PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY---PIPYD 371 (405)
T ss_dssp TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS---SCCGG
T ss_pred CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc---CCCHH
Confidence 34 222 257875421 113457899999999999999999999999999999999999875321 23899
Q ss_pred cccCCcchhhhc
Q 005049 352 TLFEPFTFFEAY 363 (716)
Q Consensus 352 ~Lfep~~Ff~~Y 363 (716)
+||+++++..+.
T Consensus 372 ~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 372 SLFEEAPIPPRR 383 (405)
T ss_dssp GGGSCCCCC---
T ss_pred HHhCcCCCcccc
Confidence 999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-48 Score=409.05 Aligned_cols=265 Identities=22% Similarity=0.331 Sum_probs=228.0
Q ss_pred HhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceE
Q 005049 26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (716)
Q Consensus 26 ~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~ 105 (716)
.+++||.+++.. +.||+||.++|++++++|++++++++ ++++|++|||+++|+++|+||||+
T Consensus 20 ~L~~Ei~~f~~~--i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 81 (323)
T 3nyb_A 20 WLTFEIKDFVAY--ISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDIDC 81 (323)
T ss_dssp HHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEEE
T ss_pred HHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCceE
Confidence 356666666664 78999999999999999999998642 357899999999999999999999
Q ss_pred EEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe--cCeeeeEEeeeccccccCCCCCCCchhhhccc
Q 005049 106 LCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183 (716)
Q Consensus 106 lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~l 183 (716)
+|+.|.......+++..+++.|++.+.++++++|.+|+||||||.+ .||+|||+|++.
T Consensus 82 ~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~-------------------- 141 (323)
T 3nyb_A 82 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT-------------------- 141 (323)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS--------------------
T ss_pred EEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc--------------------
Confidence 9999886532236889999999998888999999999999999996 799999999763
Q ss_pred chhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHhhCCC---------CC
Q 005049 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN---------AV 254 (716)
Q Consensus 184 De~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQlyPn---------as 254 (716)
+|+|.++.|.++++..++||.++++||+|||+||||+++.|+||||+|+|||+++||++|+ .+
T Consensus 142 --------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~ 213 (323)
T 3nyb_A 142 --------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDN 213 (323)
T ss_dssp --------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGC
T ss_pred --------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999985 36
Q ss_pred HHHHHHHHHHhhc-cCCCCCceeecccccCC---CCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHH
Q 005049 255 PSMLVSRFFRVYT-QWRWPNPVLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 330 (716)
Q Consensus 255 ~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~---~~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~E 330 (716)
+++||.+||+||+ +|||++.++. ++.|. ...+.|..- .+..+.+.|+|+||++|++|+++++ ..++.|++|
T Consensus 214 lg~LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~ 288 (323)
T 3nyb_A 214 LGVLLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKA 288 (323)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHH
Confidence 8999999999999 9999998764 34443 223467542 2223457899999999999999985 478999999
Q ss_pred HHHHHHHHHHH
Q 005049 331 FQRGHEICEAM 341 (716)
Q Consensus 331 F~RA~~Il~~i 341 (716)
|++|+++|.+-
T Consensus 289 F~~A~~~L~~~ 299 (323)
T 3nyb_A 289 FAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999763
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=3.1e-39 Score=357.74 Aligned_cols=302 Identities=16% Similarity=0.232 Sum_probs=213.6
Q ss_pred CCChHHH-HhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeee-ccCC
Q 005049 19 GPTDDDL-MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSY-RLGV 96 (716)
Q Consensus 19 ~Pt~~D~-~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy-~lGv 96 (716)
.|.+.-+ .....+.+...... +++++.+.|+.++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 3444333 23344444444433 888999999999999999999874 36999999999 7999
Q ss_pred CCCCCCceEEEecCCCCCch-hhHH--HHHHHHHhcC-CC--ceeeEeecCCcccEEEEEec------------------
Q 005049 97 HGPGADIDTLCVGPRHATRE-EDFF--GELHQMLTEM-PE--VTELHPVPDAHVPVMKFKFS------------------ 152 (716)
Q Consensus 97 ~~p~SDID~lcv~P~~v~r~-e~Ff--~~l~~~L~~~-~~--V~~l~~V~~ArVPIIKf~~~------------------ 152 (716)
++|+||||++|+.+...... .... .++...|++. ++ +.++++|.+||||||||++.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987422111 1111 2478888875 45 57899999999999999831
Q ss_pred ----------------------------------------C--eeeeEEeeecc-----ccccCCCCCCCch-----hhh
Q 005049 153 ----------------------------------------G--VSIDLLYARLS-----LWVIPEDLDISQD-----SIL 180 (716)
Q Consensus 153 ----------------------------------------G--I~iDLsfa~l~-----~~~ip~~ldl~~d-----~lL 180 (716)
| ..+|++|.+.. ....|+. .+... -..
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~ 231 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDG-KIMTRGMREDYTR 231 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCS-SSSCGGGGGGEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccc-ccccccccccccc
Confidence 2 22556666421 0111111 00000 000
Q ss_pred cccc------------hhhhhhhcchhhHHHHHHhcCCchh-HHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHHH
Q 005049 181 QNAD------------EQTVRSLNGCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 247 (716)
Q Consensus 181 ~~lD------------e~svrSLNG~Rvtd~IlrlVP~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vc 247 (716)
..+| +-+.. .+|++.+..|..++-..++ ||.|+++||+|||+||||+++.|+||||+|+|||++++
T Consensus 232 ~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fL 310 (468)
T 2b4v_A 232 DVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYL 310 (468)
T ss_dssp EESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHH
T ss_pred ccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHH
Confidence 0011 12333 6899999999988888889 99999999999999999999999999999999999999
Q ss_pred hhC-----------------CC------------CCHHHHHHHHHHhhc-cCCCCCceeecccccCCC---CccccCCCC
Q 005049 248 QLY-----------------PN------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---GLQVWDPRR 294 (716)
Q Consensus 248 Qly-----------------Pn------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~~---~~~vWdP~~ 294 (716)
|.. |+ .++++||..||+||+ +|||.+.++. +..|.. ..+.|....
T Consensus 311 Q~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vIS--ir~g~~~~K~~~~w~~~~ 388 (468)
T 2b4v_A 311 LVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVS--LNRNRRSYRSDIGWNFPQ 388 (468)
T ss_dssp HHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBC--SSSSSCEEHHHHTCCCGG
T ss_pred HhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEE--ecCCcceecccccccccc
Confidence 864 11 158999999999999 9999998763 333422 124576421
Q ss_pred CC-CCCCCCeeEeCCCCC----CCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 005049 295 NP-KDKYHLMPIITPAYP----CMNSSYNVSTSTLRIMMDEFQRGHEICEAME 342 (716)
Q Consensus 295 ~~-~dr~hlMpIiTP~~P----~~Nsa~nVs~sTl~vI~~EF~RA~~Il~~i~ 342 (716)
+. ....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|+...
T Consensus 389 n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 389 NKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp GEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 10 011247999999999 9999999999999999999999999998644
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=3.8e-37 Score=332.70 Aligned_cols=280 Identities=16% Similarity=0.208 Sum_probs=211.2
Q ss_pred HhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceE
Q 005049 26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (716)
Q Consensus 26 ~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~ 105 (716)
+.++|+.++.+. +.||++|.+.|++++.+|++++++- + ++++|++|||+.+|+++|+||||+
T Consensus 6 ~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~---------~-------p~~~v~~FGS~~tgl~lp~SDiDl 67 (384)
T 3hj4_A 6 EFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLA---------V-------NKAHVELFGSHVSGFCTPHSDADI 67 (384)
T ss_dssp HHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHH---------S-------TTCEEEEESHHHHSCCCTTCCEEE
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH---------C-------CCcEEEEeeeccCCCCCCCCCeeE
Confidence 567777777774 7799999999999999999999852 1 368999999999999999999998
Q ss_pred EEecCCCCC------ch-hhHHHH---HHHHHhcCCCceeeEeecCCcccEEEEEe--cCeeeeEEeeeccccccCCCCC
Q 005049 106 LCVGPRHAT------RE-EDFFGE---LHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLD 173 (716)
Q Consensus 106 lcv~P~~v~------r~-e~Ff~~---l~~~L~~~~~V~~l~~V~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~ld 173 (716)
++..+.... +. ...... +.+.+. ..+++.+. |.+||||||||.+ .|++|||+|++.
T Consensus 68 vI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~---------- 135 (384)
T 3hj4_A 68 SLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI---------- 135 (384)
T ss_dssp EEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH----------
T ss_pred EEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc----------
Confidence 887765321 10 001111 122222 13566655 4599999999997 599999999874
Q ss_pred CCchhhhcccchhhhhhhcchhhHHHHHHhcCC-chhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHhhC--
Q 005049 174 ISQDSILQNADEQTVRSLNGCRVTDQILRLVPK-IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY-- 250 (716)
Q Consensus 174 l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQly-- 250 (716)
+|++.+..|..+... .++||.|+++||+||++|||++++.|+||||+|+|||+++||..
T Consensus 136 ------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~v 197 (384)
T 3hj4_A 136 ------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 197 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTS
T ss_pred ------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCC
Confidence 467778777777766 45799999999999999999999999999999999999999974
Q ss_pred -CCC------------------------------------CHHHH----HHHHHHhhccCCCCCceee-cccccC-C---
Q 005049 251 -PNA------------------------------------VPSML----VSRFFRVYTQWRWPNPVLL-CAIEEG-S--- 284 (716)
Q Consensus 251 -Pna------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~L-~~i~~G-~--- 284 (716)
|+. ++++| |.+||+||++|||.+.|+. ..++.- .
T Consensus 198 LP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~ 277 (384)
T 3hj4_A 198 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYE 277 (384)
T ss_dssp SCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHH
T ss_pred CCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccc
Confidence 221 36777 9999999999999998763 332210 0
Q ss_pred ------------CCccccCC-----C-C----------------CCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHH
Q 005049 285 ------------LGLQVWDP-----R-R----------------NPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 330 (716)
Q Consensus 285 ------------~~~~vWdP-----~-~----------------~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~E 330 (716)
...+.|.. . . .+.....++.|+| +.-.+||++.|+.+....|+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (384)
T 3hj4_A 278 RVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQE 356 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHH
T ss_pred hhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHH
Confidence 01234531 0 0 0122345899999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCcccccCCc
Q 005049 331 FQRGHEICEAMEKNEADVDWDTLFEPF 357 (716)
Q Consensus 331 F~RA~~Il~~i~~~~~~~~W~~Lfep~ 357 (716)
|+||++|+..-+.+ ...+++|...
T Consensus 357 ~~~~~~~~~~~~~~---~~~~~~~~~~ 380 (384)
T 3hj4_A 357 FNRLREMLIDKESE---LKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHTTTGGG---CCHHHHTCCC
T ss_pred HHHHHHHHhccccc---ccHHHHhhhc
Confidence 99999998753322 2677776543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=327.19 Aligned_cols=234 Identities=15% Similarity=0.251 Sum_probs=188.0
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEE
Q 005049 28 TRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLC 107 (716)
Q Consensus 28 t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~lc 107 (716)
++++.++++. +-||++|.+.|..++++|++++++. + ++++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~---------f-------P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAY---------F-------PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTT---------S-------TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH---------C-------CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 4455555543 5699999999999999999999751 2 36899999999999999999999887
Q ss_pred ecCCCCC----------------------c--hhhHHHHHHHHHhcC-CCceeeEeecCCcccEEEEEec--CeeeeEEe
Q 005049 108 VGPRHAT----------------------R--EEDFFGELHQMLTEM-PEVTELHPVPDAHVPVMKFKFS--GVSIDLLY 160 (716)
Q Consensus 108 v~P~~v~----------------------r--~e~Ff~~l~~~L~~~-~~V~~l~~V~~ArVPIIKf~~~--GI~iDLsf 160 (716)
..+.... | ...++..+.+.|++. +++.+++.|.+||||||||.+. ||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 6543110 0 013566677778774 7889999999999999999995 99999999
Q ss_pred eeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCc-cchHHH
Q 005049 161 ARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGF-LGGINW 239 (716)
Q Consensus 161 a~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~sw 239 (716)
++. +|++.+..|..+.-..++||.|+++||+|||+|||++++.|+ ||||+|
T Consensus 277 nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 874 478888888888888899999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CCHHHHHHHHHHhhccCCCCCceeec
Q 005049 240 ALLVARICQLYP-----N------------------------------------AVPSMLVSRFFRVYTQWRWPNPVLLC 278 (716)
Q Consensus 240 aLLVa~vcQlyP-----n------------------------------------as~~~LL~~FF~~Ys~wdW~~pV~L~ 278 (716)
+|||++++|... + .++++||..||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 999999999752 1 1569999999999999999987641
Q ss_pred ccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 005049 279 AIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEA 340 (716)
Q Consensus 279 ~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~EF~RA~~Il~~ 340 (716)
| ..|++.||+...+..++.|+++|..||+.
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 1 78999999999999999999999999983
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.26 E-value=1.2e-09 Score=120.41 Aligned_cols=293 Identities=16% Similarity=0.137 Sum_probs=183.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCC-CCceEEEe
Q 005049 30 KLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPG-ADIDTLCV 108 (716)
Q Consensus 30 eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~-SDID~lcv 108 (716)
-+.++|.. +-|+++|.+.=.++.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 45566654 679999988888888888777765 1 247999999999999997 99999999
Q ss_pred cCCCCCchhhHH----HHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccccccCCCCCCCchh-hhccc
Q 005049 109 GPRHATREEDFF----GELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDS-ILQNA 183 (716)
Q Consensus 109 ~P~~v~r~e~Ff----~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl~~d~-lL~~l 183 (716)
.|....++ ++= ..+.++|.+ . .+.-|.=|-+...+.|+++|+.=|--. .+.. +....
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l~~---~----~~~ya~hpyV~~~f~g~~vDVVP~y~v----------~~g~~~~tav 127 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVLDS---Y----EIRYAEHPYVHGVVKGVEVDVVPCYKL----------KEPKNIKSAV 127 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHSSS---E----EEEESSSEEEEEEETTEEEEEEEEECC----------SSSSCCCSHH
T ss_pred cCCCCCHH-HHHHHHHHHHHHHHHH---h----hhhccCCceEEEEecceEEEEEEEEEc----------cCCccccccc
Confidence 98876543 332 223333332 1 245566688888889999999754221 1100 11111
Q ss_pred chhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCC--CCCccchHHHHHHHHHHHhhCCCCCHHHHHHH
Q 005049 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSN--VAGFLGGINWALLVARICQLYPNAVPSMLVSR 261 (716)
Q Consensus 184 De~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaLLVa~vcQlyPnas~~~LL~~ 261 (716)
|- ...-++++.+...+ ++..+|++|+|.|.-|+|++ +.++++||.+=||++++ .+-..+|..
T Consensus 128 Dr-------tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~ 191 (437)
T 1r89_A 128 DR-------TPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN 191 (437)
T ss_dssp HH-------HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH
T ss_pred cC-------cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH
Confidence 10 01223444433322 88999999999999999987 46789999999999994 233333333
Q ss_pred HHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHH
Q 005049 262 FFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAM 341 (716)
Q Consensus 262 FF~~Ys~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~nVs~sTl~vI~~EF~RA~~Il~~i 341 (716)
+ + +|..++.+. ++.+ .... ...+.|+||.+|..|+|.++|..++..+..+-+...+
T Consensus 192 ~----~--~w~~~~~Id-~~~~---~~~~---------~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~----- 247 (437)
T 1r89_A 192 A----R--RWTRRTVID-VAKG---EVRK---------GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME----- 247 (437)
T ss_dssp H----T--TCCTTEEEE-GGGT---EEEE---------CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH-----
T ss_pred H----H--HhCCCeEEe-cCCC---cccC---------CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh-----
Confidence 3 3 455566442 1100 0000 1357899999999999999999988888765554433
Q ss_pred HccCCCCCcccccCCc--------chh---hh-ccceEEEEeeecChhhhhchhhHHHHHHHHHHHHhhcCCCcceeE
Q 005049 342 EKNEADVDWDTLFEPF--------TFF---EA-YKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVNATTLHTWLF 407 (716)
Q Consensus 342 ~~~~~~~~W~~Lfep~--------~Ff---~~-Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~~~~ 407 (716)
.. =.++|.|. .+- .+ =.+.+.|....++.-+ ...-|-++--.+.|...||+..+..+..
T Consensus 248 --~p----s~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~-D~l~pQl~k~~~~i~~~L~~~gF~v~~~ 318 (437)
T 1r89_A 248 --AP----SLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVD-DNLYPQLERASRKIFEFLERENFMPLRS 318 (437)
T ss_dssp --SC----CGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCH-HHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred --Cc----cHHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCc-ccchHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 22 22444332 111 11 1245666665544222 2344666666777778888887766443
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.13 E-value=8.8e-09 Score=109.91 Aligned_cols=271 Identities=15% Similarity=0.202 Sum_probs=142.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccC-cEEEEeeeeccCCCCCC-CCceEE
Q 005049 29 RKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEAN-AKIFTFGSYRLGVHGPG-ADIDTL 106 (716)
Q Consensus 29 ~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~-akI~~FGSy~lGv~~p~-SDID~l 106 (716)
++|.+++.+ .+-|+.++...=+.+++.|...|++- + +.... .... .+++.+|||+-|.++++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~----~----~~~~~-~~~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKER----C----FQGTA-DPVRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHH----T----TCC----CCEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhh----h----ccccc-CCcceEEEEEecCcCCCcccCCCCceeEE
Confidence 457778753 57899988877667777777777641 1 10000 0011 37889999999999986 999999
Q ss_pred EecCCCCCch------hhHHHHHHHHHhcC---CCce-eeEee-cCCccc-EEEEEe------cCeeeeEEeeecccccc
Q 005049 107 CVGPRHATRE------EDFFGELHQMLTEM---PEVT-ELHPV-PDAHVP-VMKFKF------SGVSIDLLYARLSLWVI 168 (716)
Q Consensus 107 cv~P~~v~r~------e~Ff~~l~~~L~~~---~~V~-~l~~V-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~i 168 (716)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+=|--....+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9988643321 13444455555531 1221 12211 111245 266666 47999987654321111
Q ss_pred CCCCCCCchh---hhcccchhhhhhhcchhh---HHHHHHhc-CCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHH
Q 005049 169 PEDLDISQDS---ILQNADEQTVRSLNGCRV---TDQILRLV-PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWAL 241 (716)
Q Consensus 169 p~~ldl~~d~---lL~~lDe~svrSLNG~Rv---td~IlrlV-P~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaL 241 (716)
...-....+. ++...... .-.|... +..-.+.+ .....++.++|+||+|-++.+. ....+.++||.+-+
T Consensus 159 ~~~~~~~~~~y~~li~~~~~~---~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lEL 234 (349)
T 1px5_A 159 TPGYKPNPEIYVQLIKECKSR---GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALEL 234 (349)
T ss_dssp CTTSCCCHHHHHHHHHHHHHH---TCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHH
T ss_pred ccccCCChHHHHHHHhhcccc---ccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHH
Confidence 0000000011 11100000 0001111 11111222 1246899999999999998864 22356799999999
Q ss_pred HHHHHHhhCCCC---CHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCC-----------CCCCeeEeC
Q 005049 242 LVARICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKD-----------KYHLMPIIT 307 (716)
Q Consensus 242 LVa~vcQlyPna---s~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~d-----------r~hlMpIiT 307 (716)
|+++.....+.. +..+-+..+|++-++|.- -.| .|+......+ +...--|+|
T Consensus 235 L~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i-------------~w~~~y~~~~~~~~~fl~~~l~~~~p~I~D 300 (349)
T 1px5_A 235 LTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCI-------------FWEAYYDFTNPVVGRCMLQQLKKPRPVILD 300 (349)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEE-------------CCCSSCCSSSHHHHHHHHHHHTSSSCEEBC
T ss_pred HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cce-------------eeeccccccchhHHhhhhhhhcCCCCeeeC
Confidence 999988765543 566778888888887631 112 2332111111 011236999
Q ss_pred CCCCCCCcccccChhhHHHHH
Q 005049 308 PAYPCMNSSYNVSTSTLRIMM 328 (716)
Q Consensus 308 P~~P~~Nsa~nVs~sTl~vI~ 328 (716)
|++|..|++.. +......+.
T Consensus 301 P~dp~~NVa~~-~~~~~~~~~ 320 (349)
T 1px5_A 301 PADPTGNVGGG-DTHSWQRLA 320 (349)
T ss_dssp TTCTTCBTTCS-CHHHHHHHH
T ss_pred CCCCCCcccCC-chhhHHHHH
Confidence 99999998876 666666665
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.96 E-value=0.0011 Score=71.29 Aligned_cols=268 Identities=14% Similarity=0.081 Sum_probs=160.9
Q ss_pred CCChHHHHhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCC
Q 005049 19 GPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHG 98 (716)
Q Consensus 19 ~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~ 98 (716)
.|.+.|-..++.|.+-=. .+.||++|..+=..++.+++.++...+ .+.|.-+- .=..|...|||.-|+++
T Consensus 19 k~~~~d~~~~~~llkr~~--~l~Ps~eEq~~v~~lv~kI~~~ld~li----v~pg~~e~----~L~~V~rVGs~aKgtll 88 (364)
T 4at7_A 19 KPAPDETSFSEALLKRNQ--DLAPNSAEQASILSLVTKINNVIDNLI----VAPGTFEV----QIEEVRQVGSYKKGTMT 88 (364)
T ss_dssp SCCCCCHHHHHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHH----HCCTTCSS----CEEEEEEEHHHHHTCCC
T ss_pred CCCCChHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHHHHHHhhh----cCCCcccc----ccceeEEeccccCCcee
Confidence 466777788888776544 589999999888888888888887644 23332211 11578999999999999
Q ss_pred CCC-CceEEEecCCCCCch--hhHHHHHHHHHhcCCCceeeEe-ecCCcccEEEEEecCeeeeEEeeeccccccCCCCCC
Q 005049 99 PGA-DIDTLCVGPRHATRE--EDFFGELHQMLTEMPEVTELHP-VPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDI 174 (716)
Q Consensus 99 p~S-DID~lcv~P~~v~r~--e~Ff~~l~~~L~~~~~V~~l~~-V~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl 174 (716)
.|. |+|++|++-.-.|.+ +....++.+-|+....-..+.. +.+|-+ .|+-....+.|=|.....+....
T Consensus 89 ~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~-~I~~~~~~v~i~It~tsp~lrk~------ 161 (364)
T 4at7_A 89 TGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGF-EISSSDATVKILITTVPPNLRKL------ 161 (364)
T ss_dssp TTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEE-EEECSSCEEEEEEEECHHHHHTC------
T ss_pred cCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceE-EEecCCCcEEEEEEeCChhhccC------
Confidence 975 899999998777752 0133444555554211111111 111111 01000001222222222111110
Q ss_pred CchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHhhCC---
Q 005049 175 SQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP--- 251 (716)
Q Consensus 175 ~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQlyP--- 251 (716)
.....|. ...|..+|-.+|-+.++...... ...+.++|++|.-.++. ..++.|.+|.+-+|+.+..-.-|
T Consensus 162 dp~~~Ld--~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s~~~~~ 234 (364)
T 4at7_A 162 DPELHLD--IKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMNNPTRQ 234 (364)
T ss_dssp CTTTBCC--HHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHSSTTSS
T ss_pred ChhHhcC--HHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 0111111 13577778889999988877764 66788999999966664 23467889777778777776544
Q ss_pred CCCHHHHHHHHHHhhc-cCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCC-CCCcccccChhhHHHHHH
Q 005049 252 NAVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP-CMNSSYNVSTSTLRIMMD 329 (716)
Q Consensus 252 nas~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~P-~~Nsa~nVs~sTl~vI~~ 329 (716)
+.++++-+.++|+..+ -+-.|.. --|.||+.+ ..++....|..-...|..
T Consensus 235 ~l~~~~afRRVLElLAsGillp~~----------------------------~Gi~DPCE~~~~~v~~~lt~qq~e~it~ 286 (364)
T 4at7_A 235 PLALNVAYRRCLQILAAGLFLPGS----------------------------VGITDPCESGNFRVHTVMTLEQQDMVCY 286 (364)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSTTB----------------------------CCCBCTTSSSCCBGGGGSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCcccCCC----------------------------CCCcCCCCCCCcchhccCCHHHHHHHHH
Confidence 4689999999999876 2222211 113566666 456666666666666766
Q ss_pred HHHHHHHHH
Q 005049 330 EFQRGHEIC 338 (716)
Q Consensus 330 EF~RA~~Il 338 (716)
--+.+.+++
T Consensus 287 sAQ~~LRll 295 (364)
T 4at7_A 287 TAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.06 E-value=0.002 Score=58.10 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred cEEEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhc
Q 005049 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129 (716)
Q Consensus 84 akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~ 129 (716)
.+++.|||++-|-+.++||||++++.+...+.. + +..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~-~-~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFL-A-RDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHH-H-HHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHH-H-HHHHHHHHHh
Confidence 579999999999999999999999887644321 2 2344555543
No 14
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.0012 Score=59.69 Aligned_cols=53 Identities=25% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEEecCCC
Q 005049 48 VSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (716)
Q Consensus 48 ~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (716)
..++++++.|++++....+. . + .-..++.|||++-|-+.++||||++++....
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677777777777654322 1 1 0157999999999999999999999987654
No 15
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.89 E-value=0.094 Score=56.97 Aligned_cols=264 Identities=14% Similarity=0.179 Sum_probs=156.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-h---------h---------h---hhccCcEEEEeeeec
Q 005049 39 NLYESQEEAVSREEVLGRLDQIVK---IWVKKISRAKGLN-D---------Q---------L---LQEANAKIFTFGSYR 93 (716)
Q Consensus 39 ~l~pS~EE~~~R~~VL~~L~~ivk---~wv~~v~~~~g~~-~---------~---------~---~~~~~akI~~FGSy~ 93 (716)
.+||++||.+.=+.++..+++.+| +|+.+-....+-. + . . ....=.-|.-+|+|.
T Consensus 22 ~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~la 101 (383)
T 4at7_B 22 SVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVA 101 (383)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEeceec
Confidence 589999999999999999998776 4554321111000 0 0 0 000112356799999
Q ss_pred cCCCCCC-CCceEEEecCCCCCchhhHHHHHHHHHh----cCC--CceeeEeecCCcccEEEEEecCeeeeEEeeecccc
Q 005049 94 LGVHGPG-ADIDTLCVGPRHATREEDFFGELHQMLT----EMP--EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 166 (716)
Q Consensus 94 lGv~~p~-SDID~lcv~P~~v~r~e~Ff~~l~~~L~----~~~--~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~~ 166 (716)
-|+-+.| -+.|+|+++..-.|+ .+...+.+.|. ... ...-...+.+|-+=|-.-....+.|=|++.+....
T Consensus 102 KGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~r 179 (383)
T 4at7_B 102 KGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR 179 (383)
T ss_dssp HTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHH
T ss_pred ccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccc
Confidence 9999975 699999999888776 46666555554 321 11112233444221111001124455555443110
Q ss_pred ----cc--CCCCCCCc-hhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCccchHHH
Q 005049 167 ----VI--PEDLDISQ-DSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINW 239 (716)
Q Consensus 167 ----~i--p~~ldl~~-d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 239 (716)
.+ .+.+...+ .+.|. -..|+.+|-.+|-+.++............++|++|.-.++.- -++-|.+|.+
T Consensus 180 e~~~~~~~~~~~~~~dp~d~Ld--~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~waL 253 (383)
T 4at7_B 180 EEMEKVLAGETLSVNDPPDVLD--RQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWPL 253 (383)
T ss_dssp HHHHHHHTTCCCCCCCCTTBCC--HHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHHH
T ss_pred cchhhcccccccccCChhhcCC--HHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhHH
Confidence 00 01111111 11111 135788888899888887777777778899999999766652 2356888888
Q ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCC--CCCCcc
Q 005049 240 ALLVARICQL-YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAY--PCMNSS 316 (716)
Q Consensus 240 aLLVa~vcQl-yPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~~~~~vWdP~~~~~dr~hlMpIiTP~~--P~~Nsa 316 (716)
-+|+.+..-. .-+.++++-+.+||+..+.--.- |. .=-|.||++ |..|.+
T Consensus 254 ELL~~~ai~s~~~~l~~~~afRRVLEllasG~lL-------------------p~--------~pgI~DPcEk~pt~~~~ 306 (383)
T 4at7_B 254 ELLCEKSIGTANRPMGAGEALRRVLECLASGIVM-------------------PD--------GSGIYDPCEKEATDAIG 306 (383)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTS-------------------TT--------SCCCBCTTCSSCCBTTT
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCccc-------------------CC--------CCCccCCCCCCCccccc
Confidence 8888877753 12357899999999997732111 00 012567777 666665
Q ss_pred cccChhhHHHHHHHHHHHHHHH
Q 005049 317 YNVSTSTLRIMMDEFQRGHEIC 338 (716)
Q Consensus 317 ~nVs~sTl~vI~~EF~RA~~Il 338 (716)
..+......|..+-+.+..++
T Consensus 307 -~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 307 -HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHH
Confidence 566677788888777777654
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.87 E-value=0.0013 Score=57.92 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEEecCCCC
Q 005049 52 EVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHA 113 (716)
Q Consensus 52 ~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v 113 (716)
++++.+++.+....+ +.|. ..++.|||++-|-+.++||||++++.+...
T Consensus 7 ~~l~~l~~~i~~l~~----~~~v---------~~v~LFGS~arG~~~~~SDiDl~V~~~~~~ 55 (98)
T 1wot_A 7 ETLRARREAVLSLCA----RHGA---------VRVRVFGSVARGEAREDSDLDLLVAFEEGR 55 (98)
T ss_dssp HHHHHHHHHHHHHHH----HHTC---------SSCEECSHHHHTCCCTTCCCEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHH----HcCC---------cEEEEEccccCCCCCCCCCEEEEEEeCCCC
Confidence 566666666654332 2232 459999999999999999999888776433
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.47 E-value=0.0071 Score=52.93 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=26.1
Q ss_pred cEEEEeeeeccCCCCCC-CCceEEEecCC
Q 005049 84 AKIFTFGSYRLGVHGPG-ADIDTLCVGPR 111 (716)
Q Consensus 84 akI~~FGSy~lGv~~p~-SDID~lcv~P~ 111 (716)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 68999999999999999 99999998875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.33 E-value=0.044 Score=56.72 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEEecCCC
Q 005049 46 EAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (716)
Q Consensus 46 E~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (716)
|.-.|+++.+.|+++++...+ ..+ . -.+|+.||||+-|-+.++||||++++....
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~----~~~---~-----i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLRE----EYA---D-----AVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HCT---T-----EEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred hccChHHHHHHHHHHHHHHHH----hcC---C-----ceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 344566666666666654322 211 0 157999999999999999999999987653
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.24 E-value=0.32 Score=51.82 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=78.0
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCCCCch---hhHHHHHHHHHhcCCCceeeEeecCCcccEE-EEEe------
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE---EDFFGELHQMLTEMPEVTELHPVPDAHVPVM-KFKF------ 151 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~---e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPII-Kf~~------ 151 (716)
...++..-||||=|--+ ..|||+|+..|.....+ ..++..+.+.|.+.+.|+++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 45789999999998877 56999999888432210 1578888899999999888777766654443 3322
Q ss_pred -cCeeeeEEeeeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCC
Q 005049 152 -SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 230 (716)
Q Consensus 152 -~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~ 230 (716)
.++.|||.++....+ .-.++-+.-+ ..| .|.++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~~------------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQY------------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 279999988664211 1112222222 222 47788999999887666
Q ss_pred CCc
Q 005049 231 AGF 233 (716)
Q Consensus 231 ~G~ 233 (716)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 20
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=93.80 E-value=0.052 Score=55.31 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=26.3
Q ss_pred cEEEEeeeeccCCCCCCCCceEEEecCCCC
Q 005049 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHA 113 (716)
Q Consensus 84 akI~~FGSy~lGv~~p~SDID~lcv~P~~v 113 (716)
..|+.|||++-|-+.++||||++++.....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~~ 61 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTEE 61 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESSTT
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCcc
Confidence 579999999999999999999988876543
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.80 E-value=0.52 Score=50.25 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=75.1
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeec-----CCcc-cEEEEEe---c
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP-----DAHV-PVMKFKF---S 152 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~-----~ArV-PIIKf~~---~ 152 (716)
....+..-||||=|-.+ ..|||+|+..|..... ..++..+.+.|.+.+.++++.... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 4699999988765543 367888999999988887654431 1222 1112221 5
Q ss_pred CeeeeEEeeeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCC
Q 005049 153 GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAG 232 (716)
Q Consensus 153 GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G 232 (716)
|+.|||.++....+ .-.++-+.-+ .. -.|.++.||+++|+-=|-+|
T Consensus 246 ~~rVDl~~vp~~~~------------------------------g~ALl~fTGS-~~---fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSEF------------------------------ACALLYFTGS-AH---FNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGGH------------------------------HHHHHHHHCC-HH---HHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHHH------------------------------HHHHHHhhCC-HH---HHHHHHHHHHHcCCCccccc
Confidence 78999988664211 1112222222 22 35788999999988767677
Q ss_pred c
Q 005049 233 F 233 (716)
Q Consensus 233 ~ 233 (716)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.44 E-value=0.31 Score=51.11 Aligned_cols=101 Identities=10% Similarity=0.159 Sum_probs=56.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEEecCCCCC---
Q 005049 38 VNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT--- 114 (716)
Q Consensus 38 ~~l~pS~EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~--- 114 (716)
.|+.|.--..+..++++++|.+.+++ .+. =--|..+||+..|-...-||||+++++.....
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~-----------d~~-----i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f 75 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTES-----------DER-----ITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNF 75 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHH-----------CTT-----EEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTC
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhc-----------CCC-----EEEEEEECCccCCCCCCccceeEEEEEcCcchhhh
Confidence 46777777777788888877777753 011 13589999999999889999999998743211
Q ss_pred chhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe-cCeeeeEEeeecc
Q 005049 115 REEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLS 164 (716)
Q Consensus 115 r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~-~GI~iDLsfa~l~ 164 (716)
.+..+...|..++- ...+.++- ..+.| +|+.|||.|..+.
T Consensus 76 ~~~~Wl~~fG~~~~---------~f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 76 DSSNWLFDVAPYLM---------LYKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp CHHHHHHHHCCEEE---------EEECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred hhHHHHHHhhhhhe---------Eeecccce-EEEEecCCcEEEEEEeeHH
Confidence 11123333321111 12223332 23444 7999999999875
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=90.64 E-value=0.37 Score=47.05 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=74.1
Q ss_pred hhhhhccCcEEEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhc--CCCce-eeEeecCCcccEEEEEe-
Q 005049 76 DQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE--MPEVT-ELHPVPDAHVPVMKFKF- 151 (716)
Q Consensus 76 ~~~~~~~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~--~~~V~-~l~~V~~ArVPIIKf~~- 151 (716)
.+.++.+++++..-||||=|-.+-+ |||+|+..|. ...+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~--------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPE--------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESS--------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCC--------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 4445556889999999999987765 9998888774 1345566777 77777 665555555333 3433
Q ss_pred -cCeeeeEEeeeccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCC
Q 005049 152 -SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 230 (716)
Q Consensus 152 -~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~ 230 (716)
.|+.|||.++..... .-.++-+.-+ +.| .+.++.||++||+-=|-
T Consensus 94 ~~~~rVDl~~vp~~~f------------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEEK------------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTCH------------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHHH------------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 689999998775311 0112222222 222 47788999999886666
Q ss_pred CCc
Q 005049 231 AGF 233 (716)
Q Consensus 231 ~G~ 233 (716)
+|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=90.12 E-value=1.3 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=41.3
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCce
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVT 134 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~ 134 (716)
.+.++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 45789999999999877 4599999888865433 368889999999887776
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=86.28 E-value=4.2 Score=44.04 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=39.5
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCCCCch-hhHHHHHHHHHhcCCCcee
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE-EDFFGELHQMLTEMPEVTE 135 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~-e~Ff~~l~~~L~~~~~V~~ 135 (716)
.+.++..-||||=|--+- .|||+|+..|...... ..++..+.+.|.+.+.|+.
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccc
Confidence 457899999999998774 5999988887654221 1277788888888777743
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=82.92 E-value=7.3 Score=44.12 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=70.8
Q ss_pred CcEEEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeee
Q 005049 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYAR 162 (716)
Q Consensus 83 ~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~ 162 (716)
..++..-||||=|--+- .|||+|+..|.. ..+.+.|.+.+.|+++......+.-+ + .-.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~-~~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-F-LKNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-E-ETTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-E-ccCCcEEEEEEEC
Confidence 57899999999888775 499988887742 23556677778887765555555333 1 1268999999876
Q ss_pred ccccccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCCCCCcc
Q 005049 163 LSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 234 (716)
Q Consensus 163 l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~L 234 (716)
...+ .-.++-+.-+ .. -.|.++.||++||+-=|-+|..
T Consensus 249 ~~~~------------------------------~~al~~~TGs-~~---~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PESY------------------------------GAGLQYLTGS-AA---HSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGGH------------------------------HHHHHHHHCC-HH---HHHHHHHHHHHTTCEEETTEEE
T ss_pred HHHH------------------------------HHHHHHhhCC-HH---HHHHHHHHHHHcCCCcchhhcc
Confidence 4311 1122222222 22 3578899999999887777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=66.73 E-value=7.5 Score=42.74 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=36.4
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCC-CC-------chhhHHHHHHHHHhc
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRH-AT-------REEDFFGELHQMLTE 129 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~-v~-------r~e~Ff~~l~~~L~~ 129 (716)
.+.-|..+|||.=|=-.++||||++++.+.. .+ ....||..|.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999997633 11 113688888877665
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=53.69 E-value=45 Score=31.94 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=43.7
Q ss_pred ccCcEEEEeeeecc---CCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcc--cEEEEEecCee
Q 005049 81 EANAKIFTFGSYRL---GVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV--PVMKFKFSGVS 155 (716)
Q Consensus 81 ~~~akI~~FGSy~l---Gv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArV--PIIKf~~~GI~ 155 (716)
+.+..-...|||++ |+-.+.-|||+++ .+ ++ ...+.+.|.+. +......-.+... -...+.+.|+.
T Consensus 31 ~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~------~d-a~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~ 101 (169)
T 2fcl_A 31 NEXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE------EG-AYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIX 101 (169)
T ss_dssp TSSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH------HH-HHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEE
T ss_pred hcCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc------cC-HHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEE
Confidence 34667889999987 5556788999776 21 12 35667777753 2222222222221 13456668999
Q ss_pred eeEEee
Q 005049 156 IDLLYA 161 (716)
Q Consensus 156 iDLsfa 161 (716)
|||...
T Consensus 102 VDlm~~ 107 (169)
T 2fcl_A 102 VEIMGD 107 (169)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 999964
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=52.97 E-value=26 Score=39.27 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.8
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEEecCCCCC---------chhhHHHHHHHHHhc
Q 005049 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT---------REEDFFGELHQMLTE 129 (716)
Q Consensus 82 ~~akI~~FGSy~lGv~~p~SDID~lcv~P~~v~---------r~e~Ff~~l~~~L~~ 129 (716)
.+.-|.-+|++.=+=-.++||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 467899999999999999999999998764311 113688887776664
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=51.76 E-value=20 Score=37.25 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=35.5
Q ss_pred EEEEeeeeccCC--CCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeec--------CCcccEEEEEe-cC
Q 005049 85 KIFTFGSYRLGV--HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP--------DAHVPVMKFKF-SG 153 (716)
Q Consensus 85 kI~~FGSy~lGv--~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~--------~ArVPIIKf~~-~G 153 (716)
-|+..||+..+- .-.-||+|+++++... +.|... ...|.+-..+-.++.-. .-.-|..-+.+ +|
T Consensus 25 Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg 99 (294)
T 2pbe_A 25 LVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDG 99 (294)
T ss_dssp EEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTS
T ss_pred EEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCC
Confidence 488999999855 7778999999998643 123321 11222222222222111 11223343444 79
Q ss_pred eeeeEEeeecc
Q 005049 154 VSIDLLYARLS 164 (716)
Q Consensus 154 I~iDLsfa~l~ 164 (716)
+.|||.|..+.
T Consensus 100 ~rIDl~~~~~~ 110 (294)
T 2pbe_A 100 NKLDLTLIPIR 110 (294)
T ss_dssp CEEEEEEEEGG
T ss_pred cEEEEEEecHH
Confidence 99999999875
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=39.55 E-value=47 Score=37.58 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=58.0
Q ss_pred EEEeeeeccCCCCCCCCceEEEecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccc
Q 005049 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (716)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~e~Ff~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (716)
+..-||||=|--+-+ |||+|+.. . . +.. |.+.+.|+ .-...++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~-~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---P-DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---H-HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---h-HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 889999999987765 99988776 1 1 121 55567665 222334322 33 89999999876431
Q ss_pred cccCCCCCCCchhhhcccchhhhhhhcchhhHHHHHHhcCCchhHHHHH-HHHHHHHHHhCCCCCCCCcc
Q 005049 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTL-RCMRFWAKRRGVYSNVAGFL 234 (716)
Q Consensus 166 ~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 234 (716)
+ .-.++-+ .. .-. |.++.||++||+-=|-+|..
T Consensus 243 ~------------------------------~~al~~~-TG-----~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 R------------------------------GALDLLR-SG-----EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp H------------------------------HHHHHHT-SC-----HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred H------------------------------HHHHHHH-hh-----hhHHHHHHHHHHHcCCCcChhhcc
Confidence 1 0112222 22 123 77899999999877777754
Done!