Query 005050
Match_columns 716
No_of_seqs 174 out of 709
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1E-176 2E-181 1493.9 68.8 588 81-716 12-599 (647)
2 PRK14696 tynA tyramine oxidase 100.0 4E-170 8E-175 1451.6 68.2 583 81-716 86-684 (721)
3 COG3733 TynA Cu2+-containing a 100.0 3E-171 6E-176 1379.0 55.3 588 81-716 28-617 (654)
4 PLN02566 amine oxidase (copper 100.0 1E-165 2E-170 1403.7 67.2 576 82-716 21-615 (646)
5 KOG1186 Copper amine oxidase [ 100.0 3E-140 7E-145 1168.8 51.8 600 68-716 13-620 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 3E-128 6E-133 1058.7 33.9 373 336-716 1-376 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 1.5E-23 3.3E-28 189.8 10.3 100 208-312 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.7 4.1E-17 8.8E-22 144.0 4.2 85 83-202 1-85 (86)
9 PRK11055 galM galactose-1-epim 32.3 4.4E+02 0.0096 29.2 11.4 126 369-521 27-158 (342)
10 COG0242 Def N-formylmethionyl- 22.4 88 0.0019 31.6 3.4 24 447-470 117-147 (168)
11 TIGR03769 P_ac_wall_RPT actino 20.4 1.2E+02 0.0026 23.6 3.0 24 503-526 5-28 (41)
12 PLN00194 aldose 1-epimerase; P 20.3 1.1E+03 0.023 26.1 11.6 129 361-520 19-159 (337)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1e-176 Score=1493.88 Aligned_cols=588 Identities=53% Similarity=0.907 Sum_probs=556.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 160 (716)
..|||||||++||++|++|||++.. .++.++|++|+|.||+|++|+. | +. +. +++|
T Consensus 12 ~~HPLdpLt~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~EP~K~~v~~--------~------~~-g~------~~~R 67 (647)
T PRK11504 12 VSHPLDPLTAAEIEAAVAILRAEGL---LGESTRFVSIELAEPPKAEVLA--------F------DP-GD------PIDR 67 (647)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---cCCceEEEEeeccCCCHHHHHh--------h------hc-CC------CCCc
Confidence 4699999999999999999999763 2358999999999999999973 2 11 22 2379
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 161 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
+|+|++++..++.++|++|+|+ +++|++|+.++++||+++.+|+.+||++|++||.|+++|+||||+++
T Consensus 68 ~a~v~~~~~~~~~~~e~vVdL~-----------~~~V~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 136 (647)
T PRK11504 68 RAFVVLYDRATGKTYEAVVSLT-----------AGEVVSWEEIPGVQPPILLEEFEECEEVVRADPRWQAALAKRGITDF 136 (647)
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCEEEEEEECCCccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCc
Confidence 9999999998889999999998 58999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~~y 320 (716)
++|+||||++|+++..++.++||+|++||+|. ++++|+||||||||.++||++++||++|+|.+.+|+|+.. +||
T Consensus 137 ~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~---~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~--~~Y 211 (647)
T PRK11504 137 DLVMVDPWSAGYFGEPEERGRRLARGLAFVRA---DPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED--GNY 211 (647)
T ss_pred ceEEEcCccccccCCCCcCCceEEEEEEEEec---CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--CCC
Confidence 99999999999988765557999999999996 4578999999999999999999999999998877777665 699
Q ss_pred CCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEee
Q 005050 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVP 400 (716)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~Vp 400 (716)
.++.+. + .|+|+|||+|+||||+||+|+|++|+||||+||||||+|||||||||+|+|+|+ .||||||+|||||+||
T Consensus 212 ~~~~~~-~-~r~dlkPl~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d~g~-~R~v~YrlslsEm~VP 288 (647)
T PRK11504 212 DPEFIP-P-LRTDLKPLEITQPEGPSFTVDGNEVEWQKWSFRVGFNPREGLVLHQVSYDDGGR-ERPILYRASLSEMVVP 288 (647)
T ss_pred ChhHcc-c-cccCCCCcceeCCCCCcEEEcCCEEEECCcEEEEecCCCCceEEEEEEEcCCCC-cceEEEEeeeeeeeee
Confidence 988765 4 599999999999999999999999999999999999999999999999999776 4889999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCCce
Q 005050 401 YGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLA 480 (716)
Q Consensus 401 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~ 480 (716)
||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++.+++|+|++++|||||||+|.|+||||+|||++.+
T Consensus 289 Ygdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D~GilwkHt~~r~~~~ 368 (647)
T PRK11504 289 YGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEEDYGILWKHTDFRTGSA 368 (647)
T ss_pred cCCCCcchhhceeeeccccCCcccccccccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeecCCeeeeeeccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeec
Q 005050 481 EVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMA 560 (716)
Q Consensus 481 ~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~d 560 (716)
+++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.++++.+||++|+|+++|++||||||||||||
T Consensus 369 ~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~d 448 (647)
T PRK11504 369 EVRRSRRLVISFFATVGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMD 448 (647)
T ss_pred EEEeccEEEEEEEEecccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999977777889999999999999999999999999
Q ss_pred ccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEecCC
Q 005050 561 VDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGS 640 (716)
Q Consensus 561 VdG~~~g~~Nsv~~~~~~~~~~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~ 640 (716)
||| .+|||++.+++..+.++.||+||+|++++|++++|.+|+++++++++|+|+|+|++++|++|+|+||||+|++
T Consensus 449 IDG----~~Nsv~~~d~~~~p~~~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~ 524 (647)
T PRK11504 449 VDG----PGNSVYEVNSVPVPMGPDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGG 524 (647)
T ss_pred ccC----CCceEEEEEeEecCCCCCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCC
Confidence 998 6899999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 641 NCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 641 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
++.+|+.++|+..+||+||+||||||+|+|+|+||+|+|+||+.+ ++||++|+++||+|+|||||||||||+|||
T Consensus 525 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~~Qs~~-~~gl~~~~~~~~~i~~~DiVlW~t~G~~Hv 599 (647)
T PRK11504 525 NPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYAAGDYPNQSAG-GDGLPAYIAADRSIENTDVVLWYTFGITHV 599 (647)
T ss_pred CccccCCCCchhhhcchhhhCcEEEeccCCCccccCCCCcccCCC-CCCHHHHhcCCCccccCceEEEEecCcccC
Confidence 999999999999999999999999999999999999999999976 579999999999999999999999999997
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=3.6e-170 Score=1451.60 Aligned_cols=583 Identities=29% Similarity=0.528 Sum_probs=536.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 160 (716)
..|||||||++||++|++|||++... +..++|++|+|.||+|++|+. | + +.+.. .+|+|
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~--------~----~--~~~~~----~~~~R 144 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLKEPDKEAVWA--------F----A--LENKP----VDQPR 144 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEEEecCCCcHHHHH--------H----H--hcCCC----CCCCc
Confidence 46999999999999999999997631 236999999999999999973 2 2 22221 23689
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 161 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
+|+|+++. ...++|++|+|+ .++|++|+.++++||+++.+||.+||++|++||+|+++|++|||+++
T Consensus 145 ~A~v~~~~--~~~~~e~vVdL~-----------~~~v~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 211 (721)
T PRK14696 145 KADVIMLD--GKHVIEAVVDLQ-----------NNKVLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDV 211 (721)
T ss_pred EEEEEEEe--CCCEEEEEEECC-----------CCEEEEEEeCCCccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCC
Confidence 99999985 457999999998 58999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCC--CCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLR 318 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~--~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~ 318 (716)
++|+||||++||++..++ .++||+|++||+|. +++|+||||||||+++||++++||++|+|++..+.|... +
T Consensus 212 ~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~~----~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~--~ 285 (721)
T PRK14696 212 KKVITTPLTVGYFDGKDGLKQDARLLKVVSYLDV----GDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA--R 285 (721)
T ss_pred CEEEEeCccccccCCcCccccCceEEEEEEEEcC----CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--c
Confidence 999999999999876643 37999999999973 579999999999999999999999999998764444433 6
Q ss_pred CCCCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEE
Q 005050 319 NYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMV 398 (716)
Q Consensus 319 ~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~ 398 (716)
||.++. + .|+++|||+|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|+ .||||||+|||||+
T Consensus 286 ~Y~~~~---~-~r~~lKPl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d~g~-~R~v~YrlSlsEm~ 360 (721)
T PRK14696 286 PYDGRD---R-VAPAVKPLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYNDNGT-KRKVMYEGSLGGMI 360 (721)
T ss_pred CCCccc---c-ccCCCCCceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcCCCc-ceeEEEEeeeeeEE
Confidence 998865 2 499999999999999999999999999999999999999999999999999876 48999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCC
Q 005050 399 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG 478 (716)
Q Consensus 399 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g 478 (716)
||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|++|||+||+++
T Consensus 361 VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D~G~~wkHt~~~~~ 440 (721)
T PRK14696 361 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQP 440 (721)
T ss_pred EeCCCCCchhhhceeeeccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeecCCCceeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCC--------CCcCcccceecCCCccccce
Q 005050 479 LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--------GEVRKYGTIIAPGLYAPVHQ 550 (716)
Q Consensus 479 ~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~--------~~~~~yGt~V~p~~~a~~Hq 550 (716)
++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+ +++.+|||+|+|+++|++||
T Consensus 441 -~~~~r~r~LVvr~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~Hq 519 (721)
T PRK14696 441 -NVSTERRELVVRWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQ 519 (721)
T ss_pred -cceEeeeEEEEEEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccce
Confidence 789999999999999999999999999999999999999999999987533 33468999999999999999
Q ss_pred eeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCC
Q 005050 551 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630 (716)
Q Consensus 551 H~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~ 630 (716)
||||||||||||| .+|||++++++..+.+..||+||+|+++++++++|.+|++++++.++|+ |+|++++|++|+
T Consensus 520 H~f~~RlD~dIDG----~~Nsv~~~d~~~~p~~~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~ 593 (721)
T PRK14696 520 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 593 (721)
T ss_pred EEEEEEEcccccC----CcceEEEEeeeEccCCCCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCC
Confidence 9999999999998 7999999999988877899999999999999999999999999999996 899999999999
Q ss_pred ceeEEEecCC--CCC----CCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCC
Q 005050 631 LTGYKLVPGS--NCL----PLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETD 704 (716)
Q Consensus 631 p~gYkl~p~~--~~~----~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eD 704 (716)
|+||||+|+. +++ +++.|+|+..+||+||+||||||+|+|+|+||+|+|+||+++ ++||++|+++||+|+|+|
T Consensus 594 pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g-~~gl~~w~~~~e~i~n~D 672 (721)
T PRK14696 594 PVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 672 (721)
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccCCc
Confidence 9999999974 332 368999999999999999999999999999999999999986 579999999999999999
Q ss_pred eEEEEeeccccC
Q 005050 705 IVLWLVEILYRI 716 (716)
Q Consensus 705 iV~W~t~G~~HI 716 (716)
||||||||+||+
T Consensus 673 iV~W~t~G~~Hv 684 (721)
T PRK14696 673 AVVWMTTGTTHV 684 (721)
T ss_pred eEEEEecCcccC
Confidence 999999999997
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-171 Score=1379.03 Aligned_cols=588 Identities=45% Similarity=0.767 Sum_probs=557.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 160 (716)
.+|||||||++||+.|++|||++... .+.++|..|+|.||+|++++. | ...+ .++.|
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~---~~~~~F~~VtL~eP~K~~v~~--------f-------~~~~-----~~ieR 84 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADF---KKNFAFTEVTLLEPDKQEVLA--------F-------RLEN-----KPIER 84 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhccc---CCceeeEEEEecCCchHHHHH--------H-------HhcC-----CCcch
Confidence 57999999999999999999997653 368999999999999999984 1 1112 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 161 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
.|++++|..+...++|++|+|+ +.+|.+|+.+++++|+|+.+||..||.+++++|+|+|||+||||+|+
T Consensus 85 ~a~~~~~~~~~~~i~EavV~L~-----------~nkv~~~q~i~~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~ 153 (654)
T COG3733 85 KALAVVYELDGKGIYEAVVDLD-----------NNKVLSWQPIKDAHPMITLDEFASVENIVRNDPRFIEACKKRGITDM 153 (654)
T ss_pred hhhhheeeccCCceEEEEEEcc-----------cceeeeeEeccccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchh
Confidence 9999999999999999999998 48999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~~y 320 (716)
++|+||||++||++.++..++|+++.+||+|.. .++|+|+|||+||+++||++.+||++|+|++++|+|... .||
T Consensus 154 ~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~---e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~--~ny 228 (654)
T COG3733 154 DQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV---EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR--ANY 228 (654)
T ss_pred hceEeccccccccCccccccceeEEEEEEEEec---CCCCcccccccceeeEEEcccCeEEEecCCCcccccccc--cCc
Confidence 999999999999987777899999999999973 568999999999999999999999999999999999854 688
Q ss_pred CCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEee
Q 005050 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVP 400 (716)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~Vp 400 (716)
.++.+.. .+.++||++|.||+|+||+|+|++|+||+|+||+|||+|||||||||+|+|+|. .|+|+||+||+||+||
T Consensus 229 ~~e~i~~--~~~~~KpiqI~QPeg~sf~i~G~~i~W~~w~frig~n~ReGlvl~dVsY~D~g~-~Rpv~YraSl~eMvVP 305 (654)
T COG3733 229 GRERIGK--ALGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIGMNPREGLVLSDVSYNDNGN-KRPVLYRASLVEMVVP 305 (654)
T ss_pred CHHHhhh--hcCCCCCceeecCCCceEEEecCEEEEeeeeEEEeccccCCeEEEEEEEcCCCc-cceEEEEeeecceeee
Confidence 7765532 367799999999999999999999999999999999999999999999999876 8999999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCcCCCCCCC-CcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCCc
Q 005050 401 YGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG-YIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGL 479 (716)
Q Consensus 401 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg-~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~ 479 (716)
||||+++|++|++||+||||+|.++++|++| ||.| .|+|||+++++.+|+|+++||||||||+|+|+||||+|||++.
T Consensus 306 YGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed~GvlwKH~d~rs~~ 384 (654)
T COG3733 306 YGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEEDAGVLWKHQDFRSPN 384 (654)
T ss_pred cCCCCcchhhhhcccccccCccccccchhhc-ccccceeEEEeeeeeccCCceEEecceeEEEeccccceeeehhhcCCc
Confidence 9999999999999999999999999999999 9999 9999999999999999999999999999999999999999999
Q ss_pred eeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCc-ccceecCCCccccceeeEEEEee
Q 005050 480 AEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRK-YGTIIAPGLYAPVHQHFFVARMD 558 (716)
Q Consensus 480 ~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~-yGt~V~p~~~a~~HqH~f~~RlD 558 (716)
.+++|.|.||||+|+||+||||+|+|+|||||+||+|++||||+++.+..+++..+ |||+|.|++.|++||||||+|||
T Consensus 385 ~~trr~r~LVVs~i~Tv~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLd 464 (654)
T COG3733 385 VETRRARGLVVSWIATVANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLD 464 (654)
T ss_pred cceeeccceEEEEEEeecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeec
Confidence 99999999999999999999999999999999999999999999999988877655 99999999999999999999999
Q ss_pred ecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEec
Q 005050 559 MAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVP 638 (716)
Q Consensus 559 ~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p 638 (716)
||||| ..|||+++++...+.+++||+||+|++++|++++|++|.+++|+.+.|+|+|+|++|+|..|+|++|||+|
T Consensus 465 m~VDG----~~Nsv~e~nv~~~P~~~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~ 540 (654)
T COG3733 465 MDVDG----ERNSVVEMNVVGAPITKGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIP 540 (654)
T ss_pred ccccC----cccceEEEEcccCCCCCCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEec
Confidence 99998 69999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 639 GSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 639 ~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
+.+..+++.++|.+.+|++|++||||||+|++.|+||+|+|+||+.+ ++||++|+++||||+|||||||||||+||+
T Consensus 541 ~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ErYp~GdYpnq~~~-~~GLp~yi~~d~sl~neDlVvW~T~GitHv 617 (654)
T COG3733 541 GHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGERYPAGDYPNQSAG-GKGLPEYIKDDRSLDNEDLVVWHTFGITHV 617 (654)
T ss_pred CCCCCCcCCCCcchhhhhhhccceEEEeccCcccccCCCCCCCCCCC-CCChhhhhhccccccCcceEEEEecCceec
Confidence 99999999999999999999999999999999999999999999986 579999999999999999999999999995
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1e-165 Score=1403.67 Aligned_cols=576 Identities=29% Similarity=0.517 Sum_probs=522.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005050 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (716)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 161 (716)
.|||||||++||++|++|||++... ....++|++|+|.||+|++|+. | +..++.+. +.|+|+
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~--~~~~~~F~~i~L~EP~K~~v~~--------~----~~~~~~~~----~~p~R~ 82 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLG--NLPNLTFHFLDLEEPEKRDVLK--------W----LSSNPSNK----SPPPRR 82 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC--CCCceEEEEEEccCCChHHHHh--------h----hhcccCCC----CCCCcE
Confidence 5999999999999999999998632 1136999999999999999973 2 33344443 246899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCC-CCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDV-QPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 162 A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~-~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
|+|++ ..+.+++|++|+|+ .++|++|+.+++. ||+++.+|+.+||++|++||.|+|+|++|||++
T Consensus 83 a~v~~--~~~~~~~e~vVdl~-----------~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~- 148 (646)
T PLN02566 83 AKVVV--RAGGETYELIVDLA-----------TGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNI- 148 (646)
T ss_pred EEEEE--ecCCCEEEEEEECC-----------CCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCc-
Confidence 99655 44467999999998 5899999999988 999999999999999999999999999999954
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~~y 320 (716)
++|+||||++||++.. .++|++|++||+|. +++|+||||||||+++||++++||++|+|....|+|+... +
T Consensus 149 ~~V~~dpw~~G~~~~~--~~~R~~q~~~y~r~----~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~--~- 219 (646)
T PLN02566 149 SEVSCIPFTVGWYGET--VTKRALKISCFYRG----GSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEG--T- 219 (646)
T ss_pred ceEEEeCcccccCCCC--CCcEEEEEEEEEcC----CCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCC--C-
Confidence 7899999999998763 47999999999993 4789999999999999999999999999876556665431 1
Q ss_pred CCCccCCCCCCCCCCCceecCCC-CCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCC-cccEEEEeeeeeEE
Q 005050 321 TAGETRGGVDRSDIKPLQIVQPE-GPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRG-RRPVAHRLSFVEMV 398 (716)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPe-G~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g-~R~I~YrlSl~Em~ 398 (716)
+ .|+|+||+.|+||| |+||+|+|++|+||||+||||||+|||||||||+|+|.+.| +||||||+|||||+
T Consensus 220 -------~-~R~d~kPl~i~QPegG~sF~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~ 291 (646)
T PLN02566 220 -------D-FRTKHKPFSFPCNVSDSGFTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETF 291 (646)
T ss_pred -------C-CCcCCCCccccCCCCCCcEEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeE
Confidence 2 39999999999999 59999999999999999999999999999999999985433 58999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeC-Cccccccccc-
Q 005050 399 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDH-GILWKHQDWR- 476 (716)
Q Consensus 399 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~-GilwkH~d~r- 476 (716)
||||||+++|+||+|||+||||+|.+||+|++||||||+|+|||+++.+++|+|++++|||||||+|+ |+||||+|++
T Consensus 292 VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~ 371 (646)
T PLN02566 292 VPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINV 371 (646)
T ss_pred EecCCCCccccccceeeccccCccccccccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5999999985
Q ss_pred ------CCceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCC--CCc---CcccceecCCCc
Q 005050 477 ------TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--GEV---RKYGTIIAPGLY 545 (716)
Q Consensus 477 ------~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~--~~~---~~yGt~V~p~~~ 545 (716)
+|.++ .+||||+|+|||||||||||+|||||+||+||+|||||+|.++.. ++. .+|||+|+|+++
T Consensus 372 ~~~~~r~g~~~----~~LVvr~I~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~ 447 (646)
T PLN02566 372 PGRVIRSGEPE----ISLVVRMVATLGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTI 447 (646)
T ss_pred CccccccCcce----EEEEEEEEEEeecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcc
Confidence 44444 499999999999999999999999999999999999999877653 322 589999999999
Q ss_pred cccceeeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeC
Q 005050 546 APVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNT 622 (716)
Q Consensus 546 a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~ 622 (716)
|++||||||||||||||| .+|||++.+++..+. ++.||+|++|+++++.+++|.+|++++++++ |.|+|+|+
T Consensus 448 a~~HqH~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~-~~~~i~N~ 522 (646)
T PLN02566 448 AVNHDHFLTYYLDLDVDG----NGNSFVKAKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEP-AELLIVNP 522 (646)
T ss_pred cccceEEEEEEEcccccC----CCCeEEEEeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCC-ceEEEECC
Confidence 999999999999999998 799999999988543 3689999999999999999999999999996 66999999
Q ss_pred CCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccC
Q 005050 623 RTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEE 702 (716)
Q Consensus 623 ~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~ 702 (716)
+++|++|+|+||||+|++++.+|+.++|+..+||+||+||||||+|+|+|+||||.|+||+++ +.||++|+++||+|+|
T Consensus 523 ~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g-~~gl~~w~~~~~~I~~ 601 (646)
T PLN02566 523 NKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRG-DDGLAVWSSRNREIEN 601 (646)
T ss_pred CCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCCcccCCCCcCccCCCC-CCChhhhhcCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999986 5799999999999999
Q ss_pred CCeEEEEeeccccC
Q 005050 703 TDIVLWLVEILYRI 716 (716)
Q Consensus 703 eDiV~W~t~G~~HI 716 (716)
||||||||||+||+
T Consensus 602 ~DiVlW~t~G~~Hv 615 (646)
T PLN02566 602 KDIVLWYTVGFHHI 615 (646)
T ss_pred CceEEEEecccccC
Confidence 99999999999997
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-140 Score=1168.84 Aligned_cols=600 Identities=35% Similarity=0.570 Sum_probs=534.0
Q ss_pred CCcCCeeeeccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccC
Q 005050 68 SSTKGIPMMVRAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRT 147 (716)
Q Consensus 68 ~~~~~~~~~~~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~ 147 (716)
....|+..+..+...|||||||+.||.+++.||+....+. ......|..|.|.||.|+-++. | .
T Consensus 13 ~~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s-~~~~~~~~av~l~eP~K~~vls--------w-------~ 76 (670)
T KOG1186|consen 13 RLGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGS-PHPAFEAVAVVLFEPQKQPVLS--------W-------L 76 (670)
T ss_pred ccccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCC-CCCceEEEEEEecCCCcCccce--------e-------c
Confidence 3456778888888999999999999999999999876432 3457889999999999998872 2 2
Q ss_pred CCCCCCCCCCCCceEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeec-CC-CCCCCCHHHHHHHHHHHhcC
Q 005050 148 KGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVV-PD-VQPPMDAVEYAECEAVVKDF 225 (716)
Q Consensus 148 ~~~~~~p~~~P~R~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l-~~-~~pp~~~~E~~~~e~~~~~~ 225 (716)
+ ++ .| ++|+|||++|... .+.++|++|||+ +++|++.+.. .+ +.|.++.+|+....+++++.
T Consensus 77 ~-gP-~~-~pPpRRA~vVaR~--gg~t~e~~vdls-----------t~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~ 140 (670)
T KOG1186|consen 77 S-GP-LP-HPPPRRALVVERH--GGPTPEARVDLS-----------TAEVVSIKHHLVGNGYPILTADELFNTSGRVLAF 140 (670)
T ss_pred c-CC-CC-CCCcceeEEEeec--CCCceEEEEecc-----------hheeeecccccccCccccccHHHHHhhhcCCccc
Confidence 3 33 12 5789999998544 478999999998 5778887665 55 78999999999999999999
Q ss_pred hhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEec
Q 005050 226 PPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFED 305 (716)
Q Consensus 226 p~~~ea~~~~gi~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d 305 (716)
+.|...+.+||+... .|.|.+|..||+++.+...+|+++..||+|.+ ..|.|.+|++|++++||+++|||++++|
T Consensus 141 ~~f~~si~~rG~~~s-~vic~~~t~Gwyge~~~g~~Rlik~~~f~~~~----~~n~y~rpieg~yi~vdld~~kVi~~~d 215 (670)
T KOG1186|consen 141 KPFCPRGLRRGDRMS-WVVCYPNTSGWYGEHPVGLERLIKHMAFYRAG----WVNQQVRPIEGFYIIVDLDEMKVIAGRD 215 (670)
T ss_pred cccchhhhccCCcce-eEEEecceeeecccCCcchhhhhhhcccccCC----CeeEEEeecCceEEeeccccceEEEEec
Confidence 999999999998655 47778899998887765568999999999974 4799999999999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCc
Q 005050 306 RKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGR 385 (716)
Q Consensus 306 ~~~~p~p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~ 385 (716)
+..+|+|+... .+|..+.. ...+||+.++|+||||+|+|+.|+|++|+||+||+.|+||+|+||+|.|.+. .
T Consensus 216 ~~~iP~P~~~G-t~~Rs~~~------p~~~pLq~isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~~-~ 287 (670)
T KOG1186|consen 216 RVRVPLPKAKG-TELRSSVL------PGFKPLQPISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFDEDV-Y 287 (670)
T ss_pred ccccccCCCCC-CccccccC------CCCccccccCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcCCCc-e
Confidence 88888887653 45533221 1334488888999999999999999999999999999999999999999876 7
Q ss_pred ccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeee
Q 005050 386 RPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEED 465 (716)
Q Consensus 386 R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D 465 (716)
|+|+||+|+|||+||||||+++||+|+|||+||||+|+.|++|++|||||++|+|||++++..+|.|.+++||+||||++
T Consensus 288 r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~ 367 (670)
T KOG1186|consen 288 RRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKY 367 (670)
T ss_pred eeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ccccccc-ccCC--ceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCc-Cccccee
Q 005050 466 HG-ILWKHQD-WRTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEV-RKYGTII 540 (716)
Q Consensus 466 ~G-ilwkH~d-~r~g--~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~-~~yGt~V 540 (716)
+| +||||+| ...| ..+++++++|||||++|||||||||||+||+||.||++|+|||||+++++..+++ ..|||+|
T Consensus 368 ~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v 447 (670)
T KOG1186|consen 368 AGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIV 447 (670)
T ss_pred CCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEEEeeEEEEEeecccccccccccccee
Confidence 99 6999999 4445 7899999999999999999999999999999999999999999999999987665 6899999
Q ss_pred cCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecC-CCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEE
Q 005050 541 APGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEE-PGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWII 619 (716)
Q Consensus 541 ~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~-~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~i 619 (716)
+++++|++|||+|+|||||||||. .+|++++..++... .+..+++++.|+++++++++|++|+.+++..+++.|.|
T Consensus 448 ~~~~ig~~H~H~~~~rldldvdG~---~n~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~ 524 (670)
T KOG1186|consen 448 AENTIGVNHDHFVTFRLDLDVDGT---KNNSFVRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLV 524 (670)
T ss_pred cccccccccceEEEEEEcccccCC---ccceeeeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEE
Confidence 999999999999999999999983 35666655544322 23347888889999999999999999999999999999
Q ss_pred EeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCc
Q 005050 620 RNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRS 699 (716)
Q Consensus 620 vN~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~ 699 (716)
+|++++|+||+|+||||+|++++.+|+.++++..+||+|++||||||+|+++|.||||.|.+|+++ +++|+.|.++|++
T Consensus 525 ~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~-~~tl~~w~~~nr~ 603 (670)
T KOG1186|consen 525 VNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEVWASGLYADQSQG-DDTLAVWSQRNRS 603 (670)
T ss_pred ECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCccccCcccccccCCCC-CCcceehhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 6899999999999
Q ss_pred ccCCCeEEEEeeccccC
Q 005050 700 LEETDIVLWLVEILYRI 716 (716)
Q Consensus 700 I~~eDiV~W~t~G~~HI 716 (716)
|+|+|||+|||+|||||
T Consensus 604 ien~DiV~W~t~Gf~Hi 620 (670)
T KOG1186|consen 604 IENKDIVMWYTVGFHHV 620 (670)
T ss_pred cccCceEEEEEcceeec
Confidence 99999999999999998
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=2.7e-128 Score=1058.72 Aligned_cols=373 Identities=52% Similarity=0.900 Sum_probs=342.1
Q ss_pred CceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeee
Q 005050 336 PLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFD 415 (716)
Q Consensus 336 Pl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD 415 (716)
||+|+||||+||+|+|++|+||+|+|||+|++||||+||||+|+|++ |+||||+|||||+||||||+++|++|+|||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~~---~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D 77 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGER---RPILYRLSLQEMVVPYGDPDPPHHRKNAFD 77 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTEE---EEEEEEEEEEEEEEEEE-SSTTHHH-EEEH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCCC---ccEEEEEeeeeeeeecCCCCchhhcccccc
Confidence 89999999999999999999999999999999999999999998531 259999999999999999999999999999
Q ss_pred cCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCCceeeeecceEEEEEeee
Q 005050 416 AGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT 495 (716)
Q Consensus 416 ~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T 495 (716)
+||||||.++++|++||||||+|+|||+++.+++|+|++++|||||||+|.|+||||++++++..+++|+|+||||+|+|
T Consensus 78 ~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G~l~kH~~~~~~~~~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 78 SGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAGPLWKHTDYRTGRFEVRRSRRLVVRTIST 157 (413)
T ss_dssp HHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEEEEEEEEETTSSEEEEEEEEEEEEEEEEE
T ss_pred ccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCCchhhcccccccccceeeccEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEE
Q 005050 496 VANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 575 (716)
Q Consensus 496 VgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~ 575 (716)
||||||||||+|||||+||++|+|||||+++++.+++..+||++|+|+++|++|||+||||||||||| ++|+|+++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG----~~Nsv~~~ 233 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG----TNNSVVEV 233 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS----SEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCC----CCCeEEEE
Confidence 99999999999999999999999999999999988878899999999999999999999999999998 79999999
Q ss_pred eeeecCC---CCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCchHH
Q 005050 576 NVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKV 652 (716)
Q Consensus 576 ~~~~~~~---~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~ 652 (716)
+++.++. +..||++|+|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++++.+|+.|+|+.
T Consensus 234 d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~ 313 (413)
T PF01179_consen 234 DIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWV 313 (413)
T ss_dssp EEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCH
T ss_pred EeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchh
Confidence 9998764 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 653 LRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 653 ~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
.+||+|++||||||||+|+|+||+|+|+||+++ ++||++|+++||+|+|||||||+|||+|||
T Consensus 314 ~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~Hv 376 (413)
T PF01179_consen 314 ARRASFARHHLWVTKYKDSERYASGEYNNQSPG-DVGLPDWIADNESIENEDIVVWVTFGFHHV 376 (413)
T ss_dssp HHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SS-SSSHHHHHTTSSB-SSEEEEEEEEEEEEE-
T ss_pred hhccccccCceEEeecCCCccCCCCCCccCCCC-CCCHHHHhccCCcccCCCeEEEEecccccc
Confidence 999999999999999999999999999999986 489999999999999999999999999997
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.90 E-value=1.5e-23 Score=189.76 Aligned_cols=100 Identities=46% Similarity=0.733 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCC
Q 005050 208 PPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVE 287 (716)
Q Consensus 208 pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~ 287 (716)
|||+.+||.+++++++++|+|+++|++||++++++|+||||++|+++..+ .++|++|++||+|.. ..|+|||||+
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~g~Rl~~~~~~~r~~----~~n~YahPi~ 75 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-EGRRLTWVLCFMRDS----GNNFYAHPIE 75 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-TTS-EEEEEEEE-SS----TS-GGGSEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-CCceEEEEEEEEEcC----CCcccccccC
Confidence 78999999999999999999999999999999999999999999988765 689999999999974 2399999999
Q ss_pred CeEEEEecCCcEEEEEecCc-eecCC
Q 005050 288 GIHVLVDMQNMVVIEFEDRK-LVHLP 312 (716)
Q Consensus 288 gl~~~vD~~~~kvi~~~d~~-~~p~p 312 (716)
||+++||++++||++|++++ .+|.|
T Consensus 76 gl~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 76 GLEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp CEEEEEETTTTEEEEEEEEEEEETT-
T ss_pred ceEEEEECCCCEEEEEEeCCceeeCC
Confidence 99999999999999999988 66664
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.66 E-value=4.1e-17 Score=143.97 Aligned_cols=85 Identities=46% Similarity=0.652 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCceE
Q 005050 83 HPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRRA 162 (716)
Q Consensus 83 HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~A 162 (716)
|||||||++||++|+++|+++... .++.++|.+|+|.||+|++|+. ++++++ +|+|+|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~--~~~~~~F~~I~L~EP~K~~vl~---------------~~~~~~-----~p~R~A 58 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL--AGEKNRFRSIELQEPPKAEVLA---------------FERGGP-----PPPRRA 58 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT--TTTSEEEEEEEEE---HHHHHH---------------HHCCTT-----TS-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc--CCCCeEEEEEEeCCCCHHHHhc---------------cccCCc-----CCCeEE
Confidence 999999999999999999998621 2458999999999999999973 245554 478999
Q ss_pred EEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeee
Q 005050 163 RLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202 (716)
Q Consensus 163 ~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~ 202 (716)
+|+++++++. +|++|+|+ .|+|++|+.
T Consensus 59 ~vv~~~~~~~--~e~vVdl~-----------~~~V~~~~~ 85 (86)
T PF02727_consen 59 RVVVYDGGQS--YEAVVDLT-----------SGKVVSWKE 85 (86)
T ss_dssp EEEEEETSSS--SEEEEEEE-----------EEECSCEEE
T ss_pred EEEEEECCee--eeEEEECc-----------CCccccCcc
Confidence 9999998776 99999998 588988875
No 9
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=32.32 E-value=4.4e+02 Score=29.24 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred cceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecC
Q 005050 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNF 448 (716)
Q Consensus 369 eGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~ 448 (716)
-|-.|..+.+.|+. | .+.+++.-|.++.. +.....| .| -=+|+.||.+.-|.=.....+|- +.-.
T Consensus 27 ~GA~i~~l~vpd~~-g--------~~~dvvlg~~~~~~-y~~~~~~-~G-a~iGr~anRI~~g~f~~~G~~y~---L~~N 91 (342)
T PRK11055 27 WGATWLSCRVPLSD-G--------SVREVLLGCASPED-YPDQAAY-LG-ASVGRYANRIANSRFTLDGETYQ---LSPN 91 (342)
T ss_pred cCcEEEEEEeECCC-C--------CEeeeEECCCCHHH-HhhCCCc-cC-ceeCCcCCcccCCEEEECCEEEE---cccC
Confidence 67788888887642 2 14578888876442 2111222 23 44788899888764333333331 0001
Q ss_pred CCceEEeeceEEEeeeeCCcccccccccCCceeeeecceEEEEEeee------ccccceEEEEEEccCCeEEEEEeEeE
Q 005050 449 AGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT------VANYEYAFFWHFYQDGKIEAEVKLTG 521 (716)
Q Consensus 449 ~G~p~~~~naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T------VgNYDYi~~w~F~~DGtIe~ev~aTG 521 (716)
+ ..-|||=-..|.-+|.++. .......++++..+. -||++--..|.+..++.+++++.|++
T Consensus 92 ~-------~~n~lHGg~~G~~~~~W~v-----~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~ 158 (342)
T PRK11055 92 Q-------GGNQLHGGPEGFDKRRWQI-----VNQNDRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATV 158 (342)
T ss_pred C-------CCcccCCCCcccCCcEEEE-----EEccCCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEc
Confidence 1 1245665555543444431 111123466666654 35777788888887788888888874
No 10
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=88 Score=31.62 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=16.9
Q ss_pred cCCCceEEee----ceEEE-eeee--CCccc
Q 005050 447 NFAGGVDTIE----NCVCL-HEED--HGILW 470 (716)
Q Consensus 447 ~~~G~p~~~~----naICi-hE~D--~Gilw 470 (716)
|.+|+++++. -|+|| ||.| +|+||
T Consensus 117 D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf 147 (168)
T COG0242 117 DRNGKPQELEAEGLLARCIQHEIDHLNGVLF 147 (168)
T ss_pred cCCCCEEEEEEcCceeEEeEeeccccCcEEe
Confidence 3457766654 46777 9999 88875
No 11
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=20.38 E-value=1.2e+02 Score=23.63 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEccCCeEEEEEeEeEEEeee
Q 005050 503 FFWHFYQDGKIEAEVKLTGILSLG 526 (716)
Q Consensus 503 ~~w~F~~DGtIe~ev~aTGil~t~ 526 (716)
..|.|-+-|.-++.+++++.+..+
T Consensus 5 ~nW~FT~PG~Y~l~~~a~~~~~~G 28 (41)
T TIGR03769 5 ANWVFTKPGTYTLTVQATATLTDG 28 (41)
T ss_pred cceeeCCCeEEEEEEEEEEEeCCC
Confidence 369999999999999999976543
No 12
>PLN00194 aldose 1-epimerase; Provisional
Probab=20.26 E-value=1.1e+03 Score=26.12 Aligned_cols=129 Identities=14% Similarity=0.227 Sum_probs=67.6
Q ss_pred EEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEE
Q 005050 361 FRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKY 440 (716)
Q Consensus 361 f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~Y 440 (716)
+++.+. .-|-.|..+++.|+. | + +.+++..|.+.. .+..+..| .|-. +|..+|.+.-|-=..
T Consensus 19 l~~~i~-~~GA~l~s~~~~~~~-g-~-------~~~vvlg~~~~~-~y~~~~~~-~Ga~-lgp~anRI~~g~~~~----- 80 (337)
T PLN00194 19 ISVKLT-NYGATITSLILPDKN-G-K-------LADVVLGFDSVE-PYKNDSPY-FGAI-VGRVANRIKGAKFTL----- 80 (337)
T ss_pred EEEEEE-CCCcEEEEEEeECCC-C-C-------EeeeEECCCCHH-HHhhCCCc-cCCe-eCCCCCceeCCEEEE-----
Confidence 455555 789999999997632 2 2 457777776532 12222333 4545 888888887652211
Q ss_pred eeeeeecCCCceEEee-c--eEEEeeeeCCcccccccccCCceeeeec---ceEEEEEeee------ccccceEEEEEEc
Q 005050 441 FDAHFTNFAGGVDTIE-N--CVCLHEEDHGILWKHQDWRTGLAEVRRS---RRLSVSFICT------VANYEYAFFWHFY 508 (716)
Q Consensus 441 lD~~~~~~~G~p~~~~-n--aICihE~D~GilwkH~d~r~g~~~v~r~---r~LVvr~I~T------VgNYDYi~~w~F~ 508 (716)
+|+.+..+ | .-.||--..|..+|-++. ..... ..++++.... -+|++.-..|.+.
T Consensus 81 --------~G~~y~l~~N~~~~~lHGg~~G~~~~~w~v-----~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~ 147 (337)
T PLN00194 81 --------NGVTYKLPPNNGPNSLHGGPKGFSKVVWEV-----AKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLL 147 (337)
T ss_pred --------CCEEEEeccCCCCcccCCCCcccCceEEeE-----EEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEC
Confidence 23322221 1 123444434443333321 11111 3455555543 2355555666666
Q ss_pred cCCeEEEEEeEe
Q 005050 509 QDGKIEAEVKLT 520 (716)
Q Consensus 509 ~DGtIe~ev~aT 520 (716)
.++.+++++.+|
T Consensus 148 ~~~~L~i~~~~~ 159 (337)
T PLN00194 148 SSNTLRLDMEAK 159 (337)
T ss_pred CCCeEEEEEEEE
Confidence 667888888876
Done!