Query 005050
Match_columns 716
No_of_seqs 174 out of 709
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 5E-175 2E-179 1487.3 65.5 591 80-716 20-625 (692)
2 3loy_A Copper amine oxidase; T 100.0 3E-172 9E-177 1456.8 66.9 585 82-716 1-597 (633)
3 1w6g_A Phenylethylamine oxidas 100.0 1E-170 4E-175 1449.5 63.4 582 81-716 6-591 (646)
4 1ksi_A Copper amine oxidase; P 100.0 4E-167 1E-171 1422.6 66.5 587 82-716 2-599 (642)
5 1spu_A Copper amine oxidase; o 100.0 7E-163 2E-167 1407.3 64.2 583 81-716 92-690 (727)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 1E-146 5E-151 1264.5 55.5 575 78-716 14-655 (747)
7 1tu5_A Copper amine oxidase, l 100.0 1E-146 5E-151 1265.7 53.2 572 81-716 39-668 (746)
8 3hi7_A Amiloride-sensitive ami 100.0 1E-142 4E-147 1228.2 47.9 587 82-716 10-656 (731)
9 3pgb_A Putative uncharacterize 100.0 4E-141 1E-145 1217.1 49.7 593 77-716 60-699 (797)
10 2kvt_A Uncharacterized protein 11.1 3.3E+02 0.011 22.3 4.7 14 159-172 8-21 (71)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=4.6e-175 Score=1487.28 Aligned_cols=591 Identities=34% Similarity=0.604 Sum_probs=548.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCC
Q 005050 80 QTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPP 159 (716)
Q Consensus 80 ~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~ 159 (716)
...|||||||++||++|++||+++.. ++.++|+.|+|.||+|++|+. | + +..+ ++|+
T Consensus 20 ~~~HPLDpLs~~Ei~~a~~iv~~~~~----~~~~~F~~i~L~EP~K~~v~~---~---------~--~~~~-----~~p~ 76 (692)
T 3sxx_A 20 RPAHPLDPLSTAEIKAATNTVKSYFA----GKKISFNTVTLREPARKAYIQ---W---------K--EQGG-----PLPP 76 (692)
T ss_dssp CCSSTTSCCCHHHHHHHHHHHHHHTT----TSCEEEEEEEEECCCHHHHHH---H---------H--HSCC-----CCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC----CCCcEEEEEECCCCCHHHHHH---H---------H--hcCC-----CCCC
Confidence 35799999999999999999998764 357999999999999999984 2 1 2212 3678
Q ss_pred ceEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCC
Q 005050 160 RRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIED 239 (716)
Q Consensus 160 R~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d 239 (716)
|+|+|++++.+++.++|++|+|+ .++|++|+.++++||+|+.|||.+||++|++||+|+++|++|||++
T Consensus 77 R~a~v~~~~~~~~~~~e~vVdl~-----------~~~v~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~ 145 (692)
T 3sxx_A 77 RLAYYVILEAGKPGVKEGLVDLA-----------SLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPA 145 (692)
T ss_dssp CEEEEEEEETTCSSEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCG
T ss_pred eEEEEEEEECCCCCEEEEEEECC-----------CCeEEEEEECCCCcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 99999999988889999999998 5899999999999999999999999999999999999999999964
Q ss_pred --CCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCce-ecCCCCCC
Q 005050 240 --MDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKL-VHLPPADP 316 (716)
Q Consensus 240 --~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~-~p~p~~~~ 316 (716)
+++|+||||++|+++.. +.++||+|+|||+|.. +++|+|||||| |+++||++++||++|++... .|+|+..
T Consensus 146 ~~~~~V~~dpw~~G~~~~~-~~~~Rl~~~~~y~r~~---~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~- 219 (692)
T 3sxx_A 146 NEMHKVYCDPWTIGYDERW-GTGKRLQQALVYYRSD---EDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHK- 219 (692)
T ss_dssp GGGGGEEEEEEECCCCTTT-TTSSCEEEEEEEECSS---TTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSC-
T ss_pred cccceEEEccccccccCCC-CCCceEEEEEEEEecC---CCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCC-
Confidence 55699999999997754 4589999999999973 46899999999 99999999999999988755 4555433
Q ss_pred CCCCCCCccC--CCCCCC-CCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEee
Q 005050 317 LRNYTAGETR--GGVDRS-DIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLS 393 (716)
Q Consensus 317 ~~~y~~~~~~--~~~~r~-dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlS 393 (716)
..||.++.+. ++ .|+ |+|||+|+||||+||+|+||+|+||||+||||||+||||+||||+|+|+|+ .||||||+|
T Consensus 220 ~~~Y~p~~~~~~~~-~r~~d~kP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~R~V~YrlS 297 (692)
T 3sxx_A 220 HANFYPKHMIEKVG-AMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGN-VRPIFHRIS 297 (692)
T ss_dssp CCCCSHHHHHHHHS-SCCCCCCCCEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred CCCCChHHccccCC-CCCCCCCCceecCCCCCcEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcCCCc-ceeeeeeee
Confidence 3799887654 34 488 999999999999999999999999999999999999999999999999765 689999999
Q ss_pred eeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccc
Q 005050 394 FVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQ 473 (716)
Q Consensus 394 l~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~ 473 (716)
||||+||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+
T Consensus 298 l~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~Gil~kHt 377 (692)
T 3sxx_A 298 LSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHS 377 (692)
T ss_dssp EEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred hheeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeeccCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC--ceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCC-cCcccceecCCCccccce
Q 005050 474 DWRTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGE-VRKYGTIIAPGLYAPVHQ 550 (716)
Q Consensus 474 d~r~g--~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~-~~~yGt~V~p~~~a~~Hq 550 (716)
|||++ .++|+|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+++ ..+|||+|+|+++|++||
T Consensus 378 ~~r~~~~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~Hq 457 (692)
T 3sxx_A 378 DFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQ 457 (692)
T ss_dssp CGGGTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEE
T ss_pred eccCCCceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCcccccee
Confidence 99998 899999999999999999999999999999999999999999999999998876 689999999999999999
Q ss_pred eeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCC
Q 005050 551 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNR 627 (716)
Q Consensus 551 H~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~ 627 (716)
|+||||||||||| .+|||++++++.++. ++.|||||+|++++|.++||++|+++++++++|+|+|+|++++|+
T Consensus 458 H~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~ 533 (692)
T 3sxx_A 458 HLFSLRIDPRIDG----DGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNP 533 (692)
T ss_dssp EEEEEEEEECTTS----SCBEEEEEEEEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCT
T ss_pred EEEEEEeccccCC----CCceEEEEEeEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCC
Confidence 9999999999998 799999999998775 468999999999999999999999999999999999999999999
Q ss_pred C-CCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCC-CCChhhhh-ccCCcccCCC
Q 005050 628 T-GQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRV-GEGLATWV-EQNRSLEETD 704 (716)
Q Consensus 628 ~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~-~~gl~~~~-~~~e~I~~eD 704 (716)
+ |+|+||||+|++++.+|++++|+..+||+||+||||||||+|+|+||+|+|+||+++. .+||++|+ ++||+|+|||
T Consensus 534 ~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~D 613 (692)
T 3sxx_A 534 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 613 (692)
T ss_dssp TTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBC
T ss_pred CCCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCc
Confidence 8 9999999999999988999999999999999999999999999999999999999762 27999999 8999999999
Q ss_pred eEEEEeeccccC
Q 005050 705 IVLWLVEILYRI 716 (716)
Q Consensus 705 iV~W~t~G~~HI 716 (716)
||||||||||||
T Consensus 614 iV~W~t~G~~Hi 625 (692)
T 3sxx_A 614 ILFFHTFGITHF 625 (692)
T ss_dssp EEEEEEEEEEEC
T ss_pred eEEEEecCcccC
Confidence 999999999997
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=2.8e-172 Score=1456.78 Aligned_cols=585 Identities=32% Similarity=0.541 Sum_probs=537.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005050 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (716)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 161 (716)
.|||||||++||++|++||+++..+ .+.++|+.|+|.||+|++|+. | |..++.|. +.++|+|+
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------l~~~~~g~--~~~~p~R~ 63 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG---PERPHFIQIDRLDPPKKDMIR---Y---------LEAERTGK--PLPHISRM 63 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS---SSCEEEEEEEECCCCHHHHHH---H---------HHHHHHTC--CCCCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC---CCCcEEEEEECCCCCHHHHHH---H---------HhhhhcCC--CCCCCCcE
Confidence 4999999999999999999987642 257999999999999999984 2 22333332 12367899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCC-CCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPD-VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 162 A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~-~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
|+|+++. ++.++|++|+|+ +++|++|+.+++ +||+|+.+||.+||++|++||+|+++|+||||+++
T Consensus 64 a~v~~~~--~~~~~e~vVdl~-----------~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~ 130 (633)
T 3loy_A 64 TYVYYYI--GLDFYKALVNVS-----------YGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPH 130 (633)
T ss_dssp EEEEEEE--TTEEEEEEEETT-----------TTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTT
T ss_pred EEEEEEe--CCCEEEEEEECC-----------CCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 9997776 678999999998 589999999997 89999999999999999999999999999999998
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCce------ec---C
Q 005050 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKL------VH---L 311 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~------~p---~ 311 (716)
++|+||||++|+++ +.++||+|||||+|.. +++++|+|||||| |+++||++++||++|++... +| .
T Consensus 131 ~~V~~dpw~~G~d~---~~~~Rl~q~~~y~r~~-~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~ 205 (633)
T 3loy_A 131 VRVVCDPWMNGTDS---KEDRMLIQCYMYLASA-AHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAW 205 (633)
T ss_dssp EEEEEEEEECCCSS---CCCSCEEEEEEEEEET-TCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCC
T ss_pred ceEEEeccccccCC---CCCcEEEEEEEEEecC-CCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCC
Confidence 99999999999854 3589999999999963 2578999999998 88999999999999987411 11 2
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEE
Q 005050 312 PPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHR 391 (716)
Q Consensus 312 p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~Yr 391 (716)
++ ....||.++.+. + .|+|+|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+ | |+||||
T Consensus 206 ~~-~~~~~Y~p~~~~-~-~r~d~kp~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~Yr 277 (633)
T 3loy_A 206 DE-FPFVEYHPDLNG-E-TIVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFK----G-RSVVYR 277 (633)
T ss_dssp CC-CCCCCCSTTTSC-C-CCCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEE
T ss_pred CC-CCCCCcChhHcc-c-ccCCCCCcceeCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEEC----C-EEEEEE
Confidence 22 223799987764 3 49999999999999999999999999999999999999999999999997 3 789999
Q ss_pred eeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccc
Q 005050 392 LSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWK 471 (716)
Q Consensus 392 lSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gilwk 471 (716)
+|||||+||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|++||
T Consensus 278 lSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~k 357 (633)
T 3loy_A 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYK 357 (633)
T ss_dssp EEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEeccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCcccccee
Q 005050 472 HQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQH 551 (716)
Q Consensus 472 H~d~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH 551 (716)
|+|||+|.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++++++..+|||+|+|+++|++|||
T Consensus 358 Ht~~r~~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 437 (633)
T 3loy_A 358 HTNYRTNVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQH 437 (633)
T ss_dssp EECTTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCCTTEEEEETTEEEECEEE
T ss_pred eccccCCceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEEEEEEEEeeeecCCcccCCCcceecCCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred eEEEEeeecccCCCCCCccEEEEEeeeecCCC-CCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCC-C
Q 005050 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPG-KNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT-G 629 (716)
Q Consensus 552 ~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~-~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~-G 629 (716)
+||||||||||| .+|||++.+++..+.+ ..|||||+|+++++.+++| |+++++++++|+|+|+|++++|++ |
T Consensus 438 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G 511 (633)
T 3loy_A 438 MLSFRIDPAVDG----YENTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISK 511 (633)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTC
T ss_pred EEEEEecccccC----CCCEEEEEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCC
Confidence 999999999998 7999999998876654 3799999999999999885 789999999999999999999995 9
Q ss_pred CceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEE
Q 005050 630 QLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWL 709 (716)
Q Consensus 630 ~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~ 709 (716)
+|+||||+|+.++++|+.|+|+..+||+||+||||||||+|+|+||+|+|+||+.+ ++||++|+++||+|+||||||||
T Consensus 512 ~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~gl~~w~~~~e~i~n~DiV~W~ 590 (633)
T 3loy_A 512 KPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT-DTGLGVWARRDENVRNDNPVVWA 590 (633)
T ss_dssp SEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHTTCCCCCTTBCEEEEE
T ss_pred ccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCCccccCCCCccCCCC-CCChHHHhcCCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999975 57999999999999999999999
Q ss_pred eeccccC
Q 005050 710 VEILYRI 716 (716)
Q Consensus 710 t~G~~HI 716 (716)
|||||||
T Consensus 591 t~G~~Hi 597 (633)
T 3loy_A 591 TLGFTHI 597 (633)
T ss_dssp EEEEEEC
T ss_pred ecCcccC
Confidence 9999997
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=1.2e-170 Score=1449.47 Aligned_cols=582 Identities=36% Similarity=0.620 Sum_probs=546.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 160 (716)
..|||||||++||++|++||+++.. .+..++|+.|+|.||+|++ ++ ++|+|
T Consensus 6 ~~HPldpLs~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~eP~K~~---------------------g~-----~~P~R 56 (646)
T 1w6g_A 6 TASPFRLASAGEISEVQGILRTAGL---LGPEKRIAYLGVLDPARGA---------------------GS-----EAEDR 56 (646)
T ss_dssp -CCTTCCCCHHHHHHHHHHHHHTTC---CCTTEEEEEEEECCCCSCC---------------------SS-----SCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---CCCCcEEEEEEccCCchhh---------------------CC-----CCCCe
Confidence 4699999999999999999999764 2358999999999999964 22 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEE---eeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCC
Q 005050 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVIS---SKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI 237 (716)
Q Consensus 161 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~---~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi 237 (716)
+|+|++++++++.++|++|+|+ .++|++ |+.++++||+++.+||.++|++|+++|.|+++|++|||
T Consensus 57 ~A~vv~~~~~~~~~~E~vV~L~-----------~~~v~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl 125 (646)
T 1w6g_A 57 RFRVFIHDVSGARPQEVTVSVT-----------NGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 125 (646)
T ss_dssp EEEEEEEETTSCCCEEEEEETT-----------TTEEEEEEECCHHHHCBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCeEEecccceeCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence 9999999988889999999998 478998 89999999999999999999999999999999999999
Q ss_pred CCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCC
Q 005050 238 EDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPL 317 (716)
Q Consensus 238 ~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~ 317 (716)
+++++|+| ||++||+++..+.++|++|++||+|.. +++|+|+|||+||+++||++++||++|++.+.++.|. ..
T Consensus 126 ~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~--~~ 199 (646)
T 1w6g_A 126 DVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDF---PEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA--EH 199 (646)
T ss_dssp CGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSS---TTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC--SC
T ss_pred CCCCeeEE-eecccccCCccCCCcEEEEEEEEEecC---CCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC--CC
Confidence 98888999 999997766555689999999999973 4589999999999999999999999999876556664 23
Q ss_pred CCCCCCccCCCCCCCCCCCceecCCCCCeeEEc-ceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeee
Q 005050 318 RNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVN-GHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVE 396 (716)
Q Consensus 318 ~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~-g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~E 396 (716)
+||.++.++++ .|+++|||+|+||||+||+|+ |++|+||||+||||||+||||+||||+|+|+|+ .|+||||+||||
T Consensus 200 ~~y~~~~~~~~-~r~~lkP~~i~QPeGpsF~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~~g~-~R~V~YrlSlsE 277 (646)
T 1w6g_A 200 GNYTDPELTGP-LRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAE 277 (646)
T ss_dssp CCTTCHHHHCS-CCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred CccchhhcCCC-cCCCCCCceecCCCCCceEEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcCCCC-ceEEEEEeeeeE
Confidence 79988765444 499999999999999999999 999999999999999999999999999999765 689999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCccccccccc
Q 005050 397 MVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWR 476 (716)
Q Consensus 397 m~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r 476 (716)
|+||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+|||
T Consensus 278 m~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~GilwkH~~~r 357 (646)
T 1w6g_A 278 MVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLW 357 (646)
T ss_dssp EEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTT
T ss_pred EEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEE
Q 005050 477 TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVAR 556 (716)
Q Consensus 477 ~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~R 556 (716)
+|.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+ +..+|||+|+|+++|++|||+||||
T Consensus 358 ~~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t~~~~~-~~~~yGt~V~~~v~a~~HqH~f~~R 436 (646)
T 1w6g_A 358 SGINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFTSAFPE-GGSDNISQLAPGLGAPFHQHIFSAR 436 (646)
T ss_dssp TCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCT-TCCSSEEEEETTEEEECEEEEEEEE
T ss_pred CCceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEeeeecCC-ccCCCcceecCCcccccceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999977 6688999999999999999999999
Q ss_pred eeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEE
Q 005050 557 MDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKL 636 (716)
Q Consensus 557 lD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl 636 (716)
||||||| .+|||++++++.++.++.|||||+|++++|.+++|.||++++++.++|+|+|+|++++|++|+|+||||
T Consensus 437 lD~dIdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl 512 (646)
T 1w6g_A 437 LDMAIDG----FTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKL 512 (646)
T ss_dssp EEECTTS----SCBEEEEEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEE
T ss_pred ecccccC----CCCEEEEEeeEeccCCCCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEE
Confidence 9999998 799999999998876678999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 637 VPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 637 ~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
+|++++.+|+.|+|+..+||+|++||||||||+|+|+||+|+|+||+.+ ++||++|+++||+|+|+|||||||||+|||
T Consensus 513 ~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~ 591 (646)
T 1w6g_A 513 HAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLTHF 591 (646)
T ss_dssp EECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHHTTCCBCTTBCEEEEEEEEEEEC
T ss_pred ccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCcccCCC-CCChhHHhhCCCCcccCceEEEEeCccccC
Confidence 9999999999999999999999999999999999999999999999986 579999999999999999999999999997
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=4.1e-167 Score=1422.63 Aligned_cols=587 Identities=26% Similarity=0.467 Sum_probs=537.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005050 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (716)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 161 (716)
.|||||||++||++|++||+++.... ...++|+.|+|.||+|++|+. | |. ..++ ++|+|+
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------l~-~~~~-----~~P~R~ 61 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPIS--NNRLAFHYIGLDDPEKDHVLR---Y---------ET-HPTL-----VSIPRK 61 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTT--TCCEEEEEEEECCCCHHHHHH---H---------HH-CGGG-----CCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCC--CCceEEEEEECCCCCHHHHHH---H---------Hh-hcCC-----CCCCcE
Confidence 69999999999999999999976421 247899999999999999984 2 21 2333 267899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecC-CCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVP-DVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 162 A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~-~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
|+|+++.+ +.++|++|+|+ .++|++++..+ .+||+++.+||.+++++++++|.|+++|+++||+ +
T Consensus 62 A~vv~~~~--~~~~E~vV~L~-----------~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~-~ 127 (642)
T 1ksi_A 62 IFVVAIIN--SQTHEILINLR-----------IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLN-L 127 (642)
T ss_dssp EEEEEEET--TEEEEEEEETT-----------TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCC-G
T ss_pred EEEEEEeC--CeEEEEEEECC-----------CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCC-c
Confidence 99999864 68999999998 47888766555 2599999999999999999999999999999996 6
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~~y 320 (716)
..|+||||++|+++.. .++|++|++||+|. +++|+|+||||||+++||++++||++|++.+.+++|+.+. .+|
T Consensus 128 ~~v~~~pw~~g~~~~~--~~~Rl~~~~~~~~~----~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~-~~y 200 (642)
T 1ksi_A 128 SEIVCSSFTMGWFGEE--KNVRTVRLDCFMKE----STVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAEN-TEY 200 (642)
T ss_dssp GGEEEEEECCCCCSCS--CCCCEEEEEEEECS----SCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTT-CCC
T ss_pred cceEEecccccCCCCC--CCcEEEEEEEEEec----CCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCCC-CCc
Confidence 7899999999998765 36999999999995 3689999999999999999999999999877777776543 579
Q ss_pred CCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCC-cccEEEEeeeeeEEe
Q 005050 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRG-RRPVAHRLSFVEMVV 399 (716)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g-~R~I~YrlSl~Em~V 399 (716)
.+..+.++. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|.++| .|+||||+|||||+|
T Consensus 201 ~~~~~~~~~-r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~V 279 (642)
T 1ksi_A 201 QVSKQSPPF-GPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFV 279 (642)
T ss_dssp CSTTCCSCC-CCCCCCBEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred cccccCCCC-CCCCCCceecCCCCCCEEEeCcEEeeCCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEE
Confidence 887765554 999999999999999999999999999999999999999999999999985433 589999999999999
Q ss_pred ecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCC-
Q 005050 400 PYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG- 478 (716)
Q Consensus 400 pYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g- 478 (716)
|||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|.|+||||+|||++
T Consensus 280 PYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~gilwkH~~~r~~~ 359 (642)
T 1ksi_A 280 PYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPN 359 (642)
T ss_dssp EBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEECCSTT
T ss_pred eCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEEEcCCEEEEEeccCCcceeeccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecCCC-----CcCcccceecCCCcccccee
Q 005050 479 --LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPG-----EVRKYGTIIAPGLYAPVHQH 551 (716)
Q Consensus 479 --~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~-----~~~~yGt~V~p~~~a~~HqH 551 (716)
.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||++.++... +..+|||+|+|+++|++|||
T Consensus 360 ~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH 439 (642)
T 1ksi_A 360 ESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDH 439 (642)
T ss_dssp CCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEE
T ss_pred ceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccceE
Confidence 57899999999999999999999999999999999999999999999877552 24689999999999999999
Q ss_pred eEEEEeeecccCCCCCCccEEEEEeeeecCCC-CCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCC
Q 005050 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPG-KNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630 (716)
Q Consensus 552 ~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~-~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~ 630 (716)
+||||||||||| .+|||++++++.++.+ +.||++++|+++++++++|.||++++++. +|+|+|+|++++|++|+
T Consensus 440 ~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~-~r~~~i~N~~~~N~~G~ 514 (642)
T 1ksi_A 440 FYIYYLDFDIDG----THNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLA-PAELVVVNPNIKTAVGN 514 (642)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGGGCBCTTSS-CEEEEEEEEEEECTTSC
T ss_pred EEEEeeccCCCC----CCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhhhhhccCCC-ceEEEEEcCCCcCCCCC
Confidence 999999999998 7999999999876643 57999999999999999999999999999 99999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCCeEEEEe
Q 005050 631 LTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWLV 710 (716)
Q Consensus 631 p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eDiV~W~t 710 (716)
|+||||+|++++.+|+.|+|+..+||+|++||||||||+|+|+||+|+|+||+++ ++|+.+|+++||+|+|+|||||||
T Consensus 515 p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~~-~~gl~~~~~~~~~i~~~DiV~W~t 593 (642)
T 1ksi_A 515 EVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRG-DDTLAVWTKQNREIVNKDIVMWHV 593 (642)
T ss_dssp EEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHGGGCCBCSSBCEEEEEE
T ss_pred eeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCCC-CCChhhhhhCCCccccCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999975 579999999999999999999999
Q ss_pred eccccC
Q 005050 711 EILYRI 716 (716)
Q Consensus 711 ~G~~HI 716 (716)
||+|||
T Consensus 594 ~G~~H~ 599 (642)
T 1ksi_A 594 VGIHHV 599 (642)
T ss_dssp EEEEEC
T ss_pred cccccC
Confidence 999997
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=7.3e-163 Score=1407.26 Aligned_cols=583 Identities=28% Similarity=0.520 Sum_probs=532.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 160 (716)
..|||||||++||++|+++|+++.. ..++++|.+|+|+||+|++|+. | +..+++ ++|+|
T Consensus 92 ~~HPLdpLs~~Ei~~a~~il~~~~~---~~~~~~F~~i~L~eP~K~~vl~---~-----------~~~~~~----~~p~R 150 (727)
T 1spu_A 92 RPHPLNALTADEIKQAVEIVKASAD---FKPNTRFTEISLLPPDKEAVWA---F-----------ALENKP----VDQPR 150 (727)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHTSTT---CCTTCEEEEEEEECCCHHHHHH---H-----------HHHCCC----CCCCC
T ss_pred cCCCCCcCCHHHHHHHHHHHHhccc---CCCCcEEEEEEecCCCHHHHHh---H-----------HhcCCC----CCCCe
Confidence 5699999999999999999988642 2457999999999999999983 2 123332 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005050 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (716)
Q Consensus 161 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~~p~~~ea~~~~gi~d~ 240 (716)
+|+|+++++ +.++|++|+|+ .++|++|+.++++||+++.+||.++|++|+++|.|+++|+++|++++
T Consensus 151 ~A~vv~~~~--~~~~e~vV~l~-----------~~~v~~~~~~~~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~ 217 (727)
T 1spu_A 151 KADVIMLDG--KHIIEAVVDLQ-----------NNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDA 217 (727)
T ss_dssp EEEEEEEET--TEEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCT
T ss_pred EEEEEEEeC--CeEEEEEEeCC-----------CCceEEEEeCCCcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCcc
Confidence 999999875 57999999997 58899999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCC--CCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCC
Q 005050 241 DLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLR 318 (716)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~--~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~kvi~~~d~~~~p~p~~~~~~ 318 (716)
..|+||||++|+++..++ .++|++|++||++. +++|+|+||||||+++||++++||++|++...+++|... .
T Consensus 218 ~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~----~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~~--~ 291 (727)
T 1spu_A 218 KKVITTPLTVGYFDGKDGLKQDARLLKVISYLDV----GDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTA--R 291 (727)
T ss_dssp TSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECC----SSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCSC--C
T ss_pred ceEEEccccccccCCCCCCCCCcEEEEEEEEEEC----CCCCccccCccceEEEEecccCEEEEEEcCCccccCCCC--C
Confidence 999999999998774442 47999999999843 358999999999999999999999999988766666543 5
Q ss_pred CCCCCccCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEE
Q 005050 319 NYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMV 398 (716)
Q Consensus 319 ~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~g~~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~ 398 (716)
+|.+.. + .|+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .|+||||+|||||+
T Consensus 292 ~y~~~~---~-~r~~lkP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~r~V~YrlSl~Em~ 366 (727)
T 1spu_A 292 PFDGRD---R-VAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGT-KRKVMYEGSLGGMI 366 (727)
T ss_dssp CSSSTT---E-ECCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEEEE
T ss_pred Cccccc---c-ccCCCCCccccCCCCCCEEECCCccccCCcEEEEecCCCCceEEEEEEEcCCCc-eEEEEEEeEeeEEE
Confidence 787764 2 499999999999999999999999999999999999999999999999998765 68999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCcccccccccCC
Q 005050 399 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG 478 (716)
Q Consensus 399 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g 478 (716)
||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+||++
T Consensus 367 VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~G~l~kH~~~~~- 445 (727)
T 1spu_A 367 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQ- 445 (727)
T ss_dssp EEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEECCTTS-
T ss_pred EeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEecccCCcceeeeccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ceeeeecceEEEEEeeeccccceEEEEEEccCCeEEEEEeEeEEEeeeecC-----C-C--CcCcccceecCCCccccce
Q 005050 479 LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQ-----P-G--EVRKYGTIIAPGLYAPVHQ 550 (716)
Q Consensus 479 ~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe~ev~aTGil~t~~~~-----~-~--~~~~yGt~V~p~~~a~~Hq 550 (716)
.+.++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++. + + +..+|||+|+|+++|++||
T Consensus 446 ~~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~Hq 525 (727)
T 1spu_A 446 PNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQ 525 (727)
T ss_dssp CCEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECEE
T ss_pred CceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccce
Confidence 467889999999999999999999999999999999999999999987432 2 1 2368999999999999999
Q ss_pred eeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCC
Q 005050 551 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630 (716)
Q Consensus 551 H~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~gn~~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~ 630 (716)
|+||||||||||| .+|+|++.+++..+.+..||++|+|+++++.+++|.+|++++++.++|+ |+|++++|++|+
T Consensus 526 H~f~~RlD~dVdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G~ 599 (727)
T 1spu_A 526 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 599 (727)
T ss_dssp EEEEEEEEECTTS----SEEEEEEEEEEEEECCSCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTSC
T ss_pred eEEEEeecccccC----CCCeEEEEeeEEccCCCCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCCC
Confidence 9999999999998 7999999999987776789999999999999999999999999999987 999999999999
Q ss_pred ceeEEEecC--CC----CCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhhccCCcccCCC
Q 005050 631 LTGYKLVPG--SN----CLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETD 704 (716)
Q Consensus 631 p~gYkl~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~e~I~~eD 704 (716)
|+||||+|. .+ +.+++.++|+..+||+|++||||||||+|+|+||+|+|+||+++ ++||++|+++||+|+|+|
T Consensus 600 p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~-~~gl~~~~~~~e~i~~~D 678 (727)
T 1spu_A 600 PVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 678 (727)
T ss_dssp EEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHHTTCCBCSSEE
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCccccCC
Confidence 999999993 33 45788999999999999999999999999999999999999975 569999999999999999
Q ss_pred eEEEEeeccccC
Q 005050 705 IVLWLVEILYRI 716 (716)
Q Consensus 705 iV~W~t~G~~HI 716 (716)
||||||||+|||
T Consensus 679 iV~W~t~G~~H~ 690 (727)
T 1spu_A 679 AVVWMTTGTTHV 690 (727)
T ss_dssp EEEEEEEEEEEC
T ss_pred cEEEEecccccC
Confidence 999999999997
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=1.3e-146 Score=1264.52 Aligned_cols=575 Identities=19% Similarity=0.300 Sum_probs=500.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCC-CCce---EEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCC
Q 005050 78 RAQTSHPLDPLSAAEISVAVATVRAAGATPEV-RDSM---RFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPII 153 (716)
Q Consensus 78 ~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~-~~~~---~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~ 153 (716)
....+|||||||++||++|+++|+++...... ...+ .|..|+|.||+|.+|++ +|+++++
T Consensus 14 ~~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~--------------~Ld~~g~-- 77 (747)
T 1w7c_A 14 EAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT--------------YLDEDGD-- 77 (747)
T ss_dssp CCSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH--------------HHHSCCC--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHh--------------HhhCCCC--
Confidence 34457999999999999999999887211101 1234 68899999999999983 2566664
Q ss_pred CCCCCCceEEEEEEECCC--CcEEEEEEe-CccccccccCCCccceEEEeeecC---C----CCC----CCCHHHHHHHH
Q 005050 154 PTKLPPRRARLVVYNKRS--NETSIWVVE-LSEVHAATRGGHHRGKVISSKVVP---D----VQP----PMDAVEYAECE 219 (716)
Q Consensus 154 p~~~P~R~A~vv~~~~~~--~~~~e~vV~-L~~~~~~~~~g~~~~~v~~~~~l~---~----~~p----p~~~~E~~~~e 219 (716)
+|+|+|+|+++++++ +.++|++|+ |+ .+++++++.++ + .+| +++.+|+.+++
T Consensus 78 ---~P~R~A~vv~~~~~~~~~~~~E~vV~PL~-----------~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e 143 (747)
T 1w7c_A 78 ---LPPRNARTVVYFGEGEEGYFEELKVGPLP-----------VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKS 143 (747)
T ss_dssp ---CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------CCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHH
T ss_pred ---CCCceEEEEEEeCCCCCCceEEEEEcCCC-----------CCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHH
Confidence 678999999998855 789999998 98 46677787773 2 356 99999999999
Q ss_pred HHHhcChhHHHHH------HHcC-CCCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEE
Q 005050 220 AVVKDFPPFREAM------KKRG-IEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVL 292 (716)
Q Consensus 220 ~~~~~~p~~~ea~------~~~g-i~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~ 292 (716)
++|+ .+++++ +++| ++.++ +|+|++|..-++...++|++|++|| |.. .+ +|+|+||| ||+++
T Consensus 144 ~~~~---~~~~~~~~~~l~~~~g~~~~~~---l~~w~~~~~~~~~~~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~ 212 (747)
T 1w7c_A 144 SFLN---KNLNTTIMRDVLEGLIGVPYED---MGCHSAAPQLHDPATGATVDYGTCN-INT--EN-DAENLVPT-GFFFK 212 (747)
T ss_dssp HHHH---HHHTSHHHHHHHHHHHSSCGGG---EEEEECSSCEECTTTCCEEEEEEEE-ECC--SS-SCGGGCEE-EEEEE
T ss_pred HHHH---HHHHHHhhccchhhcCCcccce---eeeecccCCcCCCCCCceEEEEEEE-Eec--CC-CCccccce-eeEEE
Confidence 9999 666666 6788 86654 8899988641112247899999986 542 23 79999999 79999
Q ss_pred EecC-----CcEEEEEecCc-----------------ee---cCCCCCCCCCC---CCCccC-CC-CCCCCCCCceecCC
Q 005050 293 VDMQ-----NMVVIEFEDRK-----------------LV---HLPPADPLRNY---TAGETR-GG-VDRSDIKPLQIVQP 342 (716)
Q Consensus 293 vD~~-----~~kvi~~~d~~-----------------~~---p~p~~~~~~~y---~~~~~~-~~-~~r~dlkPl~i~QP 342 (716)
||++ ++||++|++.+ .+ ++| ..+| .+..++ ++ ..|+++|||+|+||
T Consensus 213 vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p----~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QP 288 (747)
T 1w7c_A 213 FDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID----VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEP 288 (747)
T ss_dssp EECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC----TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCT
T ss_pred EeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC----CCCCcccchhhcccCCCCcccCCCCCcccCC
Confidence 9997 57999986542 11 222 1332 232322 21 25899999999999
Q ss_pred CCCeeEEccee--ecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCC
Q 005050 343 EGPSFRVNGHF--VEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDG 420 (716)
Q Consensus 343 eG~sF~V~g~~--V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG 420 (716)
||+||+|+|++ |+||||+||||||+||||+||||+|+ | |+||||+|||||+||||||+++|++|+|||.| ||
T Consensus 289 eG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g-yG 362 (747)
T 1w7c_A 289 EGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----G-ERIVYELSLQELIAEYGSDDPFNQHTFYSDIS-YG 362 (747)
T ss_dssp TCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-HC
T ss_pred CCCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeEC----C-EEEEEEEEeeeEEeccCCCCchhheeeeeccc-cC
Confidence 99999999999 99999999999999999999999997 3 78999999999999999999999999999999 99
Q ss_pred CccCCCCCcCCCCCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCc-ccccccccCCceeeeecceEEEEEeeecccc
Q 005050 421 LGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANY 499 (716)
Q Consensus 421 ~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNY 499 (716)
+|. ||+|++||||||+|+|||+++. .+|+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||||
T Consensus 363 ~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~--~~~~v~r~r~LVvr~i~TVgNY 438 (747)
T 1w7c_A 363 VGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA--SYSAITQNPTLNVRFISTIGNA 438 (747)
T ss_dssp SSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET--TEEEEECCEEEEEEEEECCCC-
T ss_pred ccc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC--CcceeeeCceEEEEEEEecccc
Confidence 999 9999999999999999999999 999999999999999999998 9999998 7899999999999999999999
Q ss_pred ceEEEEEEccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeee
Q 005050 500 EYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKV 579 (716)
Q Consensus 500 DYi~~w~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~ 579 (716)
||||+|+|||||+||+||+|||||++.++.+++..+|||+|+|+++|++|||+||||||||||| .+|||++++++.
T Consensus 439 dYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~ 514 (747)
T 1w7c_A 439 DYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG----TKNRASQYVMKD 514 (747)
T ss_dssp CEEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEE
T ss_pred ceEEEEEEecCCeEEEEEEeeEEEeccccCCCCcCCCcceecCCcccCccceEEEEEeccccCC----CCCEEEEEeeEE
Confidence 9999999999999999999999999999988766889999999999999999999999999998 799999999997
Q ss_pred cCCCCCCCCCc-----ceEEEEEEEechhhhhhcCC-CCCCeEEEEEeCCCcCCCCCceeEEEecCCC-CCCCCCCchHH
Q 005050 580 EEPGKNNVHNN-----AFYAEEELLKSELQAMRDCN-PLTARHWIIRNTRTVNRTGQLTGYKLVPGSN-CLPLAGSEAKV 652 (716)
Q Consensus 580 ~~~~~~np~gn-----~~~~~~t~l~tE~~a~~~~~-~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~~-~~~l~~~~s~~ 652 (716)
++. .||||+ +|++++|.+++|.+|+++++ ..++|+| |+|++++|++|+|+||||+|+++ +++|+.++|+.
T Consensus 515 ~~~--~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s~~ 591 (747)
T 1w7c_A 515 VDV--EYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSG 591 (747)
T ss_dssp EEE--ECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTC
T ss_pred ccc--CCCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCchh
Confidence 764 399999 89999999999999999999 5789999 99999999999999999999999 88899999999
Q ss_pred hhhhhccccceEEeecCCCCcCCCCCCCCCCCCCC--CChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 653 LRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVG--EGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 653 ~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
.+||+||+||||||||+|+|+||+|+| ||+.+++ .+|++|+ +||+|+|+|||||||||+|||
T Consensus 592 ~~ra~fa~~~lwVT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~Hi 655 (747)
T 1w7c_A 592 PETQNWARSNLFLTKHKDTELRSSTAL-NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHL 655 (747)
T ss_dssp SSSCGGGGSSEEEEECCTTCCCSCCTT-CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEEC
T ss_pred hhcchhccCcEEEecCCCCccCCCCCc-cccCCCCCCcchhhhh-CCCccccCceEEEEecccccC
Confidence 999999999999999999999999999 7765433 4699999 999999999999999999997
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=1.5e-146 Score=1265.66 Aligned_cols=572 Identities=21% Similarity=0.275 Sum_probs=480.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC---CCCC----CCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCC
Q 005050 81 TSHPLDPLSAAEISVAVATVRAAG---ATPE----VRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPII 153 (716)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~---~~~~----~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~ 153 (716)
.+|||||||++||++++++|+++. .... .. +..|..|+|.||+|.+|+. +|+++++
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~-dn~i~~IeL~~P~K~~vL~--------------~Ld~~~~-- 101 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPS-DNCVFSVELQLPPKAAALA--------------HLDRGSP-- 101 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTT-SEEEEEEEEECCCHHHHHH--------------HHHHCCC--
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCcc-ccEEEEEECCCCCHHHhhh--------------hhcCCCC--
Confidence 569999999999999999998763 1110 11 2446679999999999983 2456654
Q ss_pred CCCCCCceEEEEEEECCC--CcEEEEEEe-CccccccccCCCccceEEEeeec-----CCCCC----CCCHHHHHHHHHH
Q 005050 154 PTKLPPRRARLVVYNKRS--NETSIWVVE-LSEVHAATRGGHHRGKVISSKVV-----PDVQP----PMDAVEYAECEAV 221 (716)
Q Consensus 154 p~~~P~R~A~vv~~~~~~--~~~~e~vV~-L~~~~~~~~~g~~~~~v~~~~~l-----~~~~p----p~~~~E~~~~e~~ 221 (716)
+|+|+|+|+++++++ +.++|++|+ |+. +++ ++.+ .+.+| +++.+|+.++|++
T Consensus 102 ---~P~R~A~vv~~~~~~~~~~v~E~vV~PL~~-----------~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~ 165 (746)
T 1tu5_A 102 ---PPAREALAIVFFGGQPQPNVTELVVGPLPQ-----------PSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQM 165 (746)
T ss_dssp ---CCCCEEEEEEEECSSSSCEEEEEEEESSSS-----------CCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHH
T ss_pred ---CCCccEEEEEEeCCCCCCceEEEEecCCCC-----------CcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHH
Confidence 688999999999855 789999998 983 443 4444 23455 9999999999999
Q ss_pred HhcChhHHHHHHHcCC---CCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecC--
Q 005050 222 VKDFPPFREAMKKRGI---EDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQ-- 296 (716)
Q Consensus 222 ~~~~p~~~ea~~~~gi---~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~-- 296 (716)
|+++|.++++|+++|+ +++. +|+++|..|..+.. .++|++|++|| |.. .+ +|+|+||| ||+++||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~p~~~~--~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~vD~~~~ 237 (746)
T 1tu5_A 166 IFNRELPQAAGVLHHCCSYKQGG-QKLLTMNSAPRGVQ--SGDRSTWFGIY-YNI--TK-GGPYLHPV-GLELLVDHKAL 237 (746)
T ss_dssp HHHTTGGGGHHHHHHHHCTTTTC-CCEEEECCSSCSSS--TTCCEEEEEEE-ECC--SS-SCGGGSEE-EEEEEEECCSS
T ss_pred HHHCHHHHHHHHHhcCCCcccCC-EEEeCccccCCcCC--CCcEEEEEEEE-Eec--CC-CCccccce-eeEEEEeCCCC
Confidence 9999999999998664 5555 88999977754332 46899998886 442 12 79999999 799999997
Q ss_pred ---CcEEEEEecCc-------------------eecCCCCCCCCCCCCCc--cCCCCCCCCCCCceecCCCCCeeEEcce
Q 005050 297 ---NMVVIEFEDRK-------------------LVHLPPADPLRNYTAGE--TRGGVDRSDIKPLQIVQPEGPSFRVNGH 352 (716)
Q Consensus 297 ---~~kvi~~~d~~-------------------~~p~p~~~~~~~y~~~~--~~~~~~r~dlkPl~i~QPeG~sF~V~g~ 352 (716)
++||++|++.+ .+++| .+|.+.. .+....|.++ ||+|+||||+||+|+|+
T Consensus 238 D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p-----~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~ 311 (746)
T 1tu5_A 238 DPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIP-----DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGN 311 (746)
T ss_dssp SGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCC-----C-----------------------------CEEEETT
T ss_pred CcccCEEEEEEECCCccCchhhhhcccccCCcccccCc-----cccCcccccccccccCCCC-CcceeCCCCCCEEecCC
Confidence 69999997442 11221 1254433 3221125565 99999999999999999
Q ss_pred eecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCC
Q 005050 353 FVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC 432 (716)
Q Consensus 353 ~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~Gc 432 (716)
+|+||||+||||||+||||+||||+|+ | |+||||+|||||+||||||++++.+++|||. +||+|.+||+|++||
T Consensus 312 ~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~-~yG~G~~a~~L~~Gc 385 (746)
T 1tu5_A 312 RVASSLWTFSFGLGAFSGPRVFDVRFQ----G-ERLAYEISLQEAGAVYGGNTPAAMLTRYMDS-GFGMGYFATPLIRGV 385 (746)
T ss_dssp EEEESSEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGG-GTCTTTTBCCCCBTT
T ss_pred cccCCCcEEEEecCCCCceEEEeeEEC----C-eeEEEEEEeeeEEeecCCCCchhhcceeecc-ccCcccccccCccCC
Confidence 999999999999999999999999997 3 7899999999999999999777777777776 599999999999999
Q ss_pred CCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCc-cccccc--ccCCceeeeecceEEEEEeeeccccceEEEEEEcc
Q 005050 433 DCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQD--WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQ 509 (716)
Q Consensus 433 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d--~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~ 509 (716)
||||+|+|||+++.+.+|+|++++|||||||+|+|+ ||||+| || +.++++|+|+||||+|+|||||||||||+|||
T Consensus 386 DCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~-~~~~v~r~r~LVvr~i~TVgNYdYi~~w~F~q 464 (746)
T 1tu5_A 386 DCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS-HYFGGVAQTVLVFRSVSTMLNADYVWDMVFYP 464 (746)
T ss_dssp TBCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC-CCCCEEEEEEEEEEEEEEETTEEEEEEEEECT
T ss_pred CCCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC-CceeeecccEEEEEEEEeecccceEEEEEEec
Confidence 999999999999999999999999999999999998 999999 88 78899999999999999999999999999999
Q ss_pred CCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCC
Q 005050 510 DGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHN 589 (716)
Q Consensus 510 DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~g 589 (716)
||+||+||+|||||++.++.++ ..+|||+|+|+++|++|||+||||||||||| .+|+|++++++.++. .||||
T Consensus 465 dG~Ie~ev~aTGil~t~~~~~~-~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~~~--~np~~ 537 (746)
T 1tu5_A 465 NGAIEVKLHATGYISSAFLFGA-ARRYGNQVGEHTLGPVHTHSAHYKVDLDVGG----LENWVWAEDMAFVPT--AIPWS 537 (746)
T ss_dssp TSCEEEEEEEEECCCCEECCTT-GGGGEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--EETTE
T ss_pred CCcEEEEEEecceEeeeecCCC-CCCCcceecCCccccccceEEEEEecccccC----CCCEEEEEeeEEccc--CCCCC
Confidence 9999999999999999998764 4789999999999999999999999999998 799999999997764 39999
Q ss_pred cc-----eEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceE
Q 005050 590 NA-----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLW 664 (716)
Q Consensus 590 n~-----~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lw 664 (716)
++ |++++|.+++|.+|++++++.++|+| |+|++++|++|+|+||||+|++++.+|+.++|...+||+||+||||
T Consensus 538 ~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lw 616 (746)
T 1tu5_A 538 PEHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLA 616 (746)
T ss_dssp EEEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEE
T ss_pred cccccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceE
Confidence 99 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCcCCCCCCCCCCCCCC--CChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 665 VTPYAHDEMYPGGEFPNQNPRVG--EGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 665 VT~y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
||||+|+|+||+|+| ||+.+++ .+|++|+ +||+|+|+|||||||||+|||
T Consensus 617 VT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~Hi 668 (746)
T 1tu5_A 617 ITQRKETEPSSSSVF-NQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHI 668 (746)
T ss_dssp EEECCTTCCCSSCTT-TTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEEC
T ss_pred EeccCCCcccCCccc-cccCCCCCCccHhhhc-CCCCccCCceEEEEecccccC
Confidence 999999999999999 6665422 4689999 999999999999999999997
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=1.1e-142 Score=1228.16 Aligned_cols=587 Identities=22% Similarity=0.305 Sum_probs=499.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005050 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (716)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 161 (716)
+-++..||++|++++.+.|.+.. ++.+.......|.||.|+++|++ +|+|+++|.+++++++ +|+|+
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~-------~l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P~R~ 76 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKK-------ELRLQPSSTTTMAKNTVFLIEML-LPKKYHVLRFLDKGER-----HPVRE 76 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCG-------GGCBCCTTSSCSSSEEEEEEEEE-CCCHHHHHHHHHHCCC-----CCCCE
T ss_pred CCccccCCHHHHHHHHHHHhcCC-------CCCCcccccCCccCCeEEEEEec-CCCchhhhhhhcCCCC-----CCCcc
Confidence 35799999999999999998752 24455556677889999988887 8899999999999885 78999
Q ss_pred EEEEEEECCCC--cEEEEEE-eCcccc----ccccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHhc-----ChhHH
Q 005050 162 ARLVVYNKRSN--ETSIWVV-ELSEVH----AATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKD-----FPPFR 229 (716)
Q Consensus 162 A~vv~~~~~~~--~~~e~vV-~L~~~~----~~~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~~-----~p~~~ 229 (716)
|+|+|+++++. .+.|++| +|+... +.+|+|+ .+|+..+|++..|+..+.+++++ +..++
T Consensus 77 A~vvi~fG~~~~P~v~Ey~VGPLP~p~~~~~l~~~~~~---------~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (731)
T 3hi7_A 77 ARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGY---------QSSWASRPISTAEYALLYHTLQEATKPLHQFFL 147 (731)
T ss_dssp EEEEEEECSSSSCEEEEEEEECSSSCCEEEEESCCTTC---------CCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred eEEEEEcCCCCCCeeEEEEEcCCCCCCeeeecccCCCC---------cCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999875 7999999 998521 1122221 34556699999999999998886 33444
Q ss_pred HHH-HHc-CCCCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCc-----EEEE
Q 005050 230 EAM-KKR-GIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNM-----VVIE 302 (716)
Q Consensus 230 ea~-~~~-gi~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~-----kvi~ 302 (716)
+.+ ..+ +|++.|+++.+.-|.|+.++ +|. .|+.|+|+ .++.|+||+ ||+++||+.+. +|.+
T Consensus 148 ~~~~~~~~~~~~~cL~~~~~~P~~~~sg-----~r~-~W~~~~~~-----~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~ 215 (731)
T 3hi7_A 148 NTTGFSFQDCHDRCLAFTDVAPRGVASG-----QRR-SWLIIQRY-----VEGYFLHPT-GLELLVDHGSTDAGHWAVEQ 215 (731)
T ss_dssp HHHSCBSSSCSSSBEEEEECSSCSSSTT-----CCE-EEEEEEEC-----STTGGGCEE-EEEEEEECCSSSGGGCEEEE
T ss_pred HHhCceecCCCCCEEeeecCCCCccCCC-----CEE-Eehheecc-----CCCceeecc-ceEEEEecCCCChHHcEEEE
Confidence 444 112 35667899888888887543 365 89999997 468899999 89999999999 4444
Q ss_pred Ee-----------------cCceec--CCCCCCCC----------CCCCCccCCC-CCCCCCCCceecCCCCCeeEEcce
Q 005050 303 FE-----------------DRKLVH--LPPADPLR----------NYTAGETRGG-VDRSDIKPLQIVQPEGPSFRVNGH 352 (716)
Q Consensus 303 ~~-----------------d~~~~p--~p~~~~~~----------~y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~V~g~ 352 (716)
|- ++.+.. ++.....+ .|..-..++. .+++++|||+|+||||+||+|+|+
T Consensus 216 v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~ 295 (731)
T 3hi7_A 216 VWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGN 295 (731)
T ss_dssp EEETTEECSSHHHHHHHHHTTCCCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETT
T ss_pred EEECCEecCCHHHHHHHHhCCCeeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCC
Confidence 32 232222 12111101 1332233331 247899999999999999999999
Q ss_pred eecccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCC
Q 005050 353 FVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC 432 (716)
Q Consensus 353 ~V~Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~Gc 432 (716)
+|+||||+||||||+||||+||||+|+| |+|+||+|||||+||||||++||++|+|||+| ||+|.+||+|++||
T Consensus 296 ~V~W~~W~F~vgfn~reGlvL~dV~y~g-----r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGc 369 (731)
T 3hi7_A 296 AVLYGGWSFAFRLRSSSGLQVLNVHFGG-----ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGI 369 (731)
T ss_dssp EEEEBTEEEEEEEETTTEEEEEEEEETT-----EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTT
T ss_pred EEEecCcEEEEecCCCCCcEEEeEEECC-----eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCC
Confidence 9999999999999999999999999983 78999999999999999999999999999999 99999999999999
Q ss_pred CCCCCcEEeeeeeecCCCceEEeeceEEEeeeeCCc-ccccc--cccCCc--eeeeecceEEEEEeeeccccceEEEEEE
Q 005050 433 DCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQ--DWRTGL--AEVRRSRRLSVSFICTVANYEYAFFWHF 507 (716)
Q Consensus 433 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~--d~r~g~--~~v~r~r~LVvr~I~TVgNYDYi~~w~F 507 (716)
||||+|+|||+++.+++|+|++++|||||||+|+|+ +|||+ +||++. .+++|+|+||||+|+|||||||||||+|
T Consensus 370 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F 449 (731)
T 3hi7_A 370 DCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIF 449 (731)
T ss_dssp TBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEECSSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEE
T ss_pred CCCCCCEEEeeEEecCCCCEEecCCEEEEEEeeCCeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEE
Confidence 999999999999999999999999999999999998 78996 488873 3799999999999999999999999999
Q ss_pred ccCCeEEEEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCC
Q 005050 508 YQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNV 587 (716)
Q Consensus 508 ~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np 587 (716)
||||+||+||||||||+++++.++ +.+|||+|+|+++|++|||+||||||||||| .+|||++++++.++. .||
T Consensus 450 ~qdGsIe~eVraTGilst~~~~~~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~--~nP 522 (731)
T 3hi7_A 450 YPNGVMEAKMHATGYVHATFYTPE-GLRHGTRLHTHLIGNIHTHLVHYRVDLDVAG----TKNSFQTLQMKLENI--TNP 522 (731)
T ss_dssp CTTSCEEEEEEEEECCCEEECCGG-GGGSEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--ECT
T ss_pred ecCCeEEEEEEEEEEEeecccCCC-CCCCcceecCCcccccceeEEEEEeccccCC----CCCEEEEEeceecCC--CCC
Confidence 999999999999999999998764 4689999999999999999999999999998 799999999988764 588
Q ss_pred CCcc-----eEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccc
Q 005050 588 HNNA-----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHN 662 (716)
Q Consensus 588 ~gn~-----~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~ 662 (716)
|+++ ++++++++++|.+|+++++++++|+|+|+|+ ++|++|+|+||||+|++....++.++|...+||+||+||
T Consensus 523 ~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~ 601 (731)
T 3hi7_A 523 WSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYP 601 (731)
T ss_dssp TCTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCS
T ss_pred CCCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccc
Confidence 8876 5899999999999999999999999999999 789999999999999876655666889888999999999
Q ss_pred eEEeecCCCCcCCCCCCCCCCCCC-CCChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 663 LWVTPYAHDEMYPGGEFPNQNPRV-GEGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 663 lwVT~y~d~E~~asg~y~nq~~~~-~~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
||||||+|+|+||+|+|++|+++. .+||++|+++||+|+|||||||||||||||
T Consensus 602 lwVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~Hi 656 (731)
T 3hi7_A 602 LAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHI 656 (731)
T ss_dssp EEEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEEC
T ss_pred eEEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCceecCceEEEEecccccC
Confidence 999999999999999997776542 268999999999999999999999999997
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=3.6e-141 Score=1217.12 Aligned_cols=593 Identities=20% Similarity=0.294 Sum_probs=497.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCC
Q 005050 77 VRAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTK 156 (716)
Q Consensus 77 ~~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~ 156 (716)
..|.-.+++..||++|+.++.+.|.+.. .+.+....-..|.||.|+++|++ +|+|+++|.+++++++
T Consensus 60 ~~ap~~~vfadLs~~E~~aV~~~L~~~~-------~l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~----- 126 (797)
T 3pgb_A 60 IKAPKENVWYGLTDDETADVAKWLFGRP-------ELNLTTTENAGEWDNTIALIELH-RPNKSEAIPYLDGSGP----- 126 (797)
T ss_dssp CCCSSCCSSSCCCHHHHHHHHHHHHTCT-------TTCCCCTTTCCSSSEEEEEEEEE-CCCHHHHHHHHHC--------
T ss_pred ccCCCCCcccccCHHHHHHHHHHHhcCC-------CCCCcccccCCccCCeEEEEEee-CCCHHHHHHhhcCCCC-----
Confidence 3444679999999999999999999753 23344445567888888888887 7888888889999885
Q ss_pred CCCceEEEEEEECCCC--cEEEEEE-eCccccc-----c-----ccCCCccceEEEeeecCCCCCCCCHHHHHHHHHHHh
Q 005050 157 LPPRRARLVVYNKRSN--ETSIWVV-ELSEVHA-----A-----TRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVK 223 (716)
Q Consensus 157 ~P~R~A~vv~~~~~~~--~~~e~vV-~L~~~~~-----~-----~~~g~~~~~v~~~~~l~~~~pp~~~~E~~~~e~~~~ 223 (716)
+|+|+|+|+|+++++. .+.|++| +|+.... + .++|+ .++...++++..|+..+.++++
T Consensus 127 ~P~R~A~vvi~fG~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g---------~~~~~~r~~~~~e~~~l~~~~~ 197 (797)
T 3pgb_A 127 APTRHAHVRLNNRATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQG---------QVRNVEPDGETVYSEWLFKISA 197 (797)
T ss_dssp CCCCEEEEEEEECSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTT---------EEECSCCCTTHHHHTTHHHHHH
T ss_pred CCCeeEEEEEEcCCCCCCceEEEEEcCCCCCCcceeEEccccccCCCCC---------CCCcccCcchhhHHHHHHHHHH
Confidence 7899999999999776 6999999 9986311 0 11222 3466788889999999999998
Q ss_pred cChhHHHHHHH---cCCCCCCeEEEecccccccCCCCCCCCceEEEEEEEecCCCCCCCCccCCCCCCeEEEEecCCcE-
Q 005050 224 DFPPFREAMKK---RGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMV- 299 (716)
Q Consensus 224 ~~p~~~ea~~~---~gi~d~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pl~gl~~~vD~~~~k- 299 (716)
+-......+.. .|+.+.++++.+.-|.|+.++ +|. +|++|+|...+ ..++.|+||+ ||+++||+.+++
T Consensus 198 ~~~~~~~~l~~~t~~~~~~~~L~~~~~~P~g~~sg-----~r~-~W~~~~~~~~g-~~d~~~lhP~-gl~~lvDh~~~Dp 269 (797)
T 3pgb_A 198 SIADITLDLWNGTALGLENDTLDIWGIDPLWQDDG-----RII-RWDMFWNMADD-EFDSETLLPL-GLYLKSDVTGRDP 269 (797)
T ss_dssp HTHHHHHHHHSCCCSSSTTCCEEEEECSSCBCSTT-----CCE-EEEEEEECCCT-TCCCGGGCEE-EEEEEEECCSSCG
T ss_pred HHHHHHHHHhhcccccCCCCeEeeeccCCCCcCCC-----CEE-EeeeeeccCCC-ccccceeecc-ceEEEEecCCCCh
Confidence 75444444432 345556788888778886443 354 89999997421 1356999999 899999999884
Q ss_pred ----EEEEe-----------------cCceecCCCCCCCCCCCCCccCCC-CCCCCCCCceecCCCCCeeEEc--ceeec
Q 005050 300 ----VIEFE-----------------DRKLVHLPPADPLRNYTAGETRGG-VDRSDIKPLQIVQPEGPSFRVN--GHFVE 355 (716)
Q Consensus 300 ----vi~~~-----------------d~~~~p~p~~~~~~~y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~V~--g~~V~ 355 (716)
|.+|- ++.+..+.+ ...+.|.....++. ++|+++|||+|+||||+||+|+ |++|+
T Consensus 270 s~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~-~~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~ 348 (797)
T 3pgb_A 270 SQWKLLGWMYNDIFYETTEEFRKAYWSPGFVKLKP-NVDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVT 348 (797)
T ss_dssp GGCEEEEEEETTEEESSHHHHHHHHTSTTCCCCCC-CCCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEE
T ss_pred hHcEEEEEEECCEecCCHHHHHHHHhCCCeeecCC-CCCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEE
Confidence 44432 233333322 11234543223332 3588999999999999999997 79999
Q ss_pred ccCeEEEEEecCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCcCCCCCC
Q 005050 356 WQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCL 435 (716)
Q Consensus 356 Wq~W~f~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCp 435 (716)
||||+||||||+||||+||||+|+ | |+||||+|||||+|||||+ .|+++|++||+||||||.+||+|++|||||
T Consensus 349 W~~W~F~vgfn~ReGlvL~dV~y~----g-r~V~YrlSlsEm~VPYg~~-~P~~~~~af~D~eyG~G~~an~L~lGcDCp 422 (797)
T 3pgb_A 349 WMDFSFYIAFNRDTGLSLFDIKYK----G-QRVLYELGLQEALAHYAAN-DPVQSSVAYLDSYYGFGPYAFELLKGYDCP 422 (797)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCS-SHHHHHCEEEGGGTCSGGGCCCCCBTTTBC
T ss_pred eCCcEEEEecCCCCceEEEccccC----C-eeEEEEeEeeeeEEeCCCC-ChhhhcceeeecccCCccccccCccCCCCC
Confidence 999999999999999999999997 3 7899999999999999996 588999999999999999999999999999
Q ss_pred CCcEEeeeeeecCCCceEEeeceEEEeeeeCCc-ccccccccCCceeeeecceEEEEEeeeccccceEEEEEEccCCeEE
Q 005050 436 GYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIE 514 (716)
Q Consensus 436 g~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~~DGtIe 514 (716)
|+|+|||+++.+. |+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||||||||||+|||||+||
T Consensus 423 g~i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~--~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe 499 (797)
T 3pgb_A 423 SYASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS--EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIG 499 (797)
T ss_dssp TTCEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS--SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEE
T ss_pred CCCEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC--CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEE
Confidence 9999999999987 7899999999999999997 9999984 6899999999999999999999999999999999999
Q ss_pred EEEeEeEEEeeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcc
Q 005050 515 AEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNA 591 (716)
Q Consensus 515 ~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~gn~ 591 (716)
+||||||||+++.+. + ..+|||+|+|+++|++|||+||||||||||| .+|||++++++.++. ...++++|+
T Consensus 500 ~eVraTGiLst~~~~-~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~~~p~~p~~~~n~ 573 (797)
T 3pgb_A 500 VEVRASGYIQSAYYA-N-NQDFGYQIHDSLSGSMHDHVLNFKADFDILG----PNNTIELVSVVPVTKQFSWSGNKTRNT 573 (797)
T ss_dssp EEEEEEECCCCEECT-T-CGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEECTTTTTCEEEE
T ss_pred EEEEEEEEEEecccC-C-CCCccceecCCccccccceEEEEeeccCCCC----CCCeEEEEeeEEccCCCCCCCCcccce
Confidence 999999999999653 3 5789999999999999999999999999998 799999999987643 122356788
Q ss_pred eEEEEEEEechhhhhhcCCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCchH-HhhhhhccccceEEeecCC
Q 005050 592 FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYAH 670 (716)
Q Consensus 592 ~~~~~t~l~tE~~a~~~~~~~~~R~w~ivN~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~-~~~ra~fa~~~lwVT~y~d 670 (716)
|+++++++++|.||+++++++++|+|+|+|++++|++|+|+||||+|+.++++|+.++|. ..+||+||+||||||||+|
T Consensus 574 ~~~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d 653 (797)
T 3pgb_A 574 MQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHD 653 (797)
T ss_dssp EEEEEEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCT
T ss_pred eEEEEEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCC
Confidence 999999999999999999999999999999999999999999999999888888878775 5688999999999999999
Q ss_pred CCcCCCCCCCCCCCCCC-CChhhhhccCCcccCCCeEEEEeeccccC
Q 005050 671 DEMYPGGEFPNQNPRVG-EGLATWVEQNRSLEETDIVLWLVEILYRI 716 (716)
Q Consensus 671 ~E~~asg~y~nq~~~~~-~gl~~~~~~~e~I~~eDiV~W~t~G~~HI 716 (716)
+|+||+|+|++|+++.+ .+|.+|+ +||+|+|||||||||||||||
T Consensus 654 ~E~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~G~~Hi 699 (797)
T 3pgb_A 654 FEPTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNLGMHHV 699 (797)
T ss_dssp TCCCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEEC
T ss_pred CccCCCCCCcccCCCCCccchhhhc-CCCccccCceEEEEecccccC
Confidence 99999999999987532 5788998 999999999999999999997
No 10
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=11.09 E-value=3.3e+02 Score=22.31 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.1
Q ss_pred CceEEEEEEECCCC
Q 005050 159 PRRARLVVYNKRSN 172 (716)
Q Consensus 159 ~R~A~vv~~~~~~~ 172 (716)
||+|++|-..++..
T Consensus 8 PReA~iV~veKG~~ 21 (71)
T 2kvt_A 8 PREAYIVTIEKGKP 21 (71)
T ss_dssp CCCEEEEEEEEECS
T ss_pred CcceEEEEeecCCC
Confidence 79999998876544
Done!