Query 005051
Match_columns 716
No_of_seqs 185 out of 1210
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 2.7E-38 9.4E-43 298.2 12.1 122 3-124 5-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 1.4E-36 5E-41 284.6 8.6 118 4-124 8-128 (134)
3 2crr_A Stromal membrane-associ 100.0 2.1E-36 7.3E-41 285.6 8.5 120 3-125 9-131 (141)
4 3jue_A Arfgap with coiled-coil 100.0 3.4E-33 1.2E-37 295.2 9.6 125 1-125 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 4E-32 1.4E-36 290.1 12.2 122 3-125 14-138 (386)
6 2owa_A Arfgap-like finger doma 100.0 8.8E-31 3E-35 246.6 9.3 111 6-120 19-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 3.8E-30 1.3E-34 244.9 7.3 92 1-93 8-103 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1.1E-29 3.7E-34 241.0 9.5 114 6-123 21-145 (147)
9 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-27 3.6E-32 244.1 12.3 120 5-124 24-147 (301)
10 2p57_A GTPase-activating prote 99.9 5.9E-28 2E-32 228.7 9.1 86 7-92 21-110 (144)
11 3lvq_E ARF-GAP with SH3 domain 99.9 9.1E-28 3.1E-32 259.0 9.1 122 4-125 4-129 (497)
12 3sub_A ADP-ribosylation factor 99.9 1.1E-27 3.9E-32 230.3 7.6 87 6-92 4-94 (163)
13 1dcq_A PYK2-associated protein 99.9 3.4E-27 1.1E-31 237.5 10.3 118 8-125 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 2.2E-25 7.4E-30 231.4 9.7 88 6-93 20-110 (329)
15 1u5k_A Hypothetical protein; O 83.9 1.4 4.8E-05 43.8 6.0 49 21-82 148-196 (244)
16 1gnf_A Transcription factor GA 53.2 7.9 0.00027 30.3 2.5 36 22-57 3-39 (46)
17 2vut_I AREA, nitrogen regulato 52.9 7.9 0.00027 29.9 2.4 34 24-57 2-36 (43)
18 1tjl_A DNAK suppressor protein 46.4 18 0.00063 34.3 4.4 34 20-53 108-142 (151)
19 4gat_A Nitrogen regulatory pro 44.9 13 0.00044 31.1 2.7 37 21-57 7-44 (66)
20 3dfx_A Trans-acting T-cell-spe 43.0 11 0.00039 31.2 2.1 38 20-57 4-42 (63)
21 1ffk_W Ribosomal protein L37AE 41.0 16 0.00055 31.2 2.8 40 10-51 13-53 (73)
22 4hc9_A Trans-acting T-cell-spe 37.6 19 0.00064 32.9 2.9 33 23-55 5-38 (115)
23 4glq_A Methyl-accepting chemot 30.9 19 0.00063 33.6 1.7 26 67-92 132-157 (171)
24 1d4u_A Nucleotide excision rep 30.4 9.4 0.00032 34.9 -0.4 31 22-52 4-35 (111)
25 3g9m_A Glucocorticoid receptor 28.9 26 0.00091 30.4 2.2 31 22-55 1-31 (90)
26 2kgo_A Uncharacterized protein 28.4 17 0.00057 33.2 0.9 32 22-53 55-87 (108)
27 1r4i_A Androgen receptor; AR, 27.4 29 0.001 31.2 2.3 33 20-55 4-36 (105)
28 2han_B Ecdysone receptor; tran 25.9 36 0.0012 31.2 2.6 31 22-55 7-37 (119)
29 2zet_C Melanophilin; complex, 25.6 24 0.00081 33.7 1.4 34 22-55 67-105 (153)
30 3dzy_D Peroxisome proliferator 25.4 32 0.0011 37.1 2.5 31 22-55 49-79 (419)
31 2kae_A GATA-type transcription 24.9 30 0.001 29.3 1.8 34 22-56 7-43 (71)
32 1hcq_A Protein (estrogen recep 24.6 40 0.0014 29.1 2.5 31 22-55 3-33 (84)
33 2ebl_A COUP transcription fact 23.4 34 0.0012 29.8 1.9 32 21-55 5-36 (89)
34 2a66_A Orphan nuclear receptor 22.1 38 0.0013 30.9 2.0 33 20-55 6-38 (113)
35 2han_A Protein ultraspiracle; 21.9 43 0.0015 29.4 2.2 31 22-55 9-39 (93)
36 2did_A Tripartite motif protei 21.9 81 0.0028 23.9 3.6 40 22-64 7-48 (53)
37 2nll_B Protein (thyroid hormon 21.7 42 0.0014 30.0 2.2 29 24-55 2-30 (103)
38 1vq8_Z 50S ribosomal protein L 21.4 25 0.00086 30.5 0.7 41 10-52 13-54 (83)
39 3k7a_M Transcription initiatio 20.9 33 0.0011 36.0 1.5 30 24-53 22-52 (345)
40 1dl6_A Transcription factor II 20.4 46 0.0016 26.7 2.0 29 24-53 12-40 (58)
41 1cit_A NGFI-B, protein (orphan 20.4 57 0.002 28.4 2.7 28 25-55 2-29 (89)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.7e-38 Score=298.18 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC--CceeeeccCCCCHHHHHHHHhcC
Q 005051 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (716)
Q Consensus 3 srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSItmDkWt~eEVe~Lq~gG 80 (716)
+|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ||||||+||+|++++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred hHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 005051 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (716)
Q Consensus 81 N~rAN~iyea~~d~~r~~~P~~sd~~~~reFIraKY~eKrF~~~ 124 (716)
|.++|++||++++....+.|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 99999999999987666778777788899999999999999865
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=284.62 Aligned_cols=118 Identities=30% Similarity=0.603 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCCCCHHHHHHHHhcC
Q 005051 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (716)
Q Consensus 4 rke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDkWt~eEVe~Lq~gG 80 (716)
+++.|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+|
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMG 87 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHc
Confidence 478889999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred hHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 005051 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (716)
Q Consensus 81 N~rAN~iyea~~d~~r~~~P~~sd~~~~reFIraKY~eKrF~~~ 124 (716)
|.++|++||++++.. .+.|.. .+.+++||++||++|+|+..
T Consensus 88 N~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 88 NGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred hHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 999999999999764 344533 35788999999999999975
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=285.61 Aligned_cols=120 Identities=30% Similarity=0.635 Sum_probs=109.5
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCCCCHHHHHHHHhc
Q 005051 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (716)
Q Consensus 3 srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDkWt~eEVe~Lq~g 79 (716)
.++++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCCC
Q 005051 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGK 125 (716)
Q Consensus 80 GN~rAN~iyea~~d~~r~~~P~~sd~~~~reFIraKY~eKrF~~~k 125 (716)
||.++|++||++++.. .+.|.. .+.+++|||+||++|+|+.+.
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCC
Confidence 9999999999999764 344543 356789999999999999764
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=3.4e-33 Score=295.19 Aligned_cols=125 Identities=20% Similarity=0.447 Sum_probs=105.8
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCCCCHHHHHHHH
Q 005051 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (716)
Q Consensus 1 M~srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDkWt~eEVe~Lq 77 (716)
|+++|++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 566799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcChHHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 005051 78 NGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (716)
Q Consensus 78 ~gGN~rAN~iyea~~d~~r~~~P~-~sd~~~~reFIraKY~eKrF~~~k 125 (716)
.+||.++|+|||++|+....++|. .++.+.+++||++||++|+|+...
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999864444443 344567788999999999998763
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=4e-32 Score=290.14 Aligned_cols=122 Identities=24% Similarity=0.460 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCCC--ceeeeccCCCCHHHHHHHHhcC
Q 005051 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNGG 80 (716)
Q Consensus 3 srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGh--rVKSItmDkWt~eEVe~Lq~gG 80 (716)
+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+|.| +||||+||+|+.++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred hHHHHHHHhhcCccccCCCCCCCc-hHHHHHHHHHHHhhccccCCC
Q 005051 81 NQRAREIYLKDWDFQRQRLPDNSN-VNKVRDFIKNVYVDRRYAGGK 125 (716)
Q Consensus 81 N~rAN~iyea~~d~~r~~~P~~sd-~~~~reFIraKY~eKrF~~~k 125 (716)
|.++|++||++++.. .++|...+ ...+++||++||++|+|+...
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999999999999765 44565544 345667999999999999753
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=8.8e-31 Score=246.64 Aligned_cols=111 Identities=24% Similarity=0.474 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCCCCHHHHHHHHhcChH
Q 005051 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (716)
Q Consensus 6 e~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDkWt~eEVe~Lq~gGN~ 82 (716)
.++..+++++.|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | |||||+||+|++++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccH
Confidence 3456778888899999999999999999999999999999999999999998 5 999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhcc
Q 005051 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120 (716)
Q Consensus 83 rAN~iyea~~d~~r~~~P~~sd~~~~reFIraKY~eKr 120 (716)
++|++||++... .|.....++++.||.+||++|.
T Consensus 99 ~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 99 RARNYFKQVLGV----NFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHH
Confidence 999999986432 1334456778889999999875
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-30 Score=244.94 Aligned_cols=92 Identities=25% Similarity=0.588 Sum_probs=84.8
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCC-CCHHHHHHH
Q 005051 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (716)
Q Consensus 1 M~srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDk-Wt~eEVe~L 76 (716)
|.... .++.+++|+.|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | |||||+||. |++++|+.|
T Consensus 8 m~~~~-k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDPS-KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCCC-HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred cccCC-HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH
Confidence 44432 356789999999999999999999999999999999999999999999999 4 999999995 999999999
Q ss_pred HhcChHHHHHHHhhcCc
Q 005051 77 QNGGNQRAREIYLKDWD 93 (716)
Q Consensus 77 q~gGN~rAN~iyea~~d 93 (716)
+.+||.++|++|++++.
T Consensus 87 ~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 87 QVGGNASASSFFHQHGC 103 (149)
T ss_dssp HTTCHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 99999999999999874
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=240.99 Aligned_cols=114 Identities=29% Similarity=0.556 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCCCCHHHHHHHHhcChH
Q 005051 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (716)
Q Consensus 6 e~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDkWt~eEVe~Lq~gGN~ 82 (716)
.+++++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | |||||+||+|+++||+.|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4688999999999999999999999999999999999999999999999998 3 999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCCc--------hHHHHHHHHHHHhhccccC
Q 005051 83 RAREIYLKDWDFQRQRLPDNSN--------VNKVRDFIKNVYVDRRYAG 123 (716)
Q Consensus 83 rAN~iyea~~d~~r~~~P~~sd--------~~~~reFIraKY~eKrF~~ 123 (716)
++|+|||++.... |...- ...+|+.|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCC----CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999864211 11111 2335566666666666653
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=244.09 Aligned_cols=120 Identities=26% Similarity=0.518 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCCCCHHHHHHHHhcCh
Q 005051 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (716)
Q Consensus 5 ke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDkWt~eEVe~Lq~gGN 81 (716)
..+++++++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| | ||||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 46778999999999999999999999999999999999999999999999998 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHhhccccCC
Q 005051 82 QRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (716)
Q Consensus 82 ~rAN~iyea~~d~~r~~~P~-~sd~~~~reFIraKY~eKrF~~~ 124 (716)
.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999998765444454 45677888999999999998765
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.9e-28 Score=228.71 Aligned_cols=86 Identities=22% Similarity=0.604 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCC-CCHHHHHHHHhcChH
Q 005051 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK-FTSQEVEALQNGGNQ 82 (716)
Q Consensus 7 ~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDk-Wt~eEVe~Lq~gGN~ 82 (716)
+++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||+|| ++||||+||+ |++++|+.|+.+||.
T Consensus 21 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~ 100 (144)
T 2p57_A 21 KTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 100 (144)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHH
Confidence 455778999999999999999999999999999999999999999999999 3999999996 999999999999999
Q ss_pred HHHHHHhhcC
Q 005051 83 RAREIYLKDW 92 (716)
Q Consensus 83 rAN~iyea~~ 92 (716)
++|++|+++.
T Consensus 101 ~an~~~e~~g 110 (144)
T 2p57_A 101 NATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 11
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=9.1e-28 Score=258.97 Aligned_cols=122 Identities=25% Similarity=0.497 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCCCCHHHHHHHHhcC
Q 005051 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (716)
Q Consensus 4 rke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDkWt~eEVe~Lq~gG 80 (716)
++.+|.++++|+.|++.|+|+.|||||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred hHHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 005051 81 NQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (716)
Q Consensus 81 N~rAN~iyea~~d~~r~~~P~-~sd~~~~reFIraKY~eKrF~~~k 125 (716)
|..+|++||+.++....++|. .++...+++||++||++++|....
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 999999999999765545554 355667888999999999998753
No 12
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.1e-27 Score=230.25 Aligned_cols=87 Identities=29% Similarity=0.607 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCCCCHHHHHHHHhcCh
Q 005051 6 EEERNEKIIRGLMKL-PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (716)
Q Consensus 6 e~Er~ekiLr~Llk~-PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDkWt~eEVe~Lq~gGN 81 (716)
+....+++|++|++. |+|++|||||+++|+|||++||||||++|+||||.|| | |||||+||+|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567889999999996 8999999999999999999999999999999999999 3 99999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005051 82 QRAREIYLKDW 92 (716)
Q Consensus 82 ~rAN~iyea~~ 92 (716)
.++|++|+++.
T Consensus 84 ~~an~~~e~~g 94 (163)
T 3sub_A 84 KKCQTYLENYG 94 (163)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=3.4e-27 Score=237.50 Aligned_cols=118 Identities=30% Similarity=0.535 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC---CceeeeccCCCCHHHHHHHHhcChHHH
Q 005051 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRA 84 (716)
Q Consensus 8 Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItmDkWt~eEVe~Lq~gGN~rA 84 (716)
|+++++|+.|++.|+|+.|+|||+.+|+|+++|||+|||++|+||||+|| ++|||++||+|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999999 499999999999999999999999999
Q ss_pred HHHHhhcCccccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 005051 85 REIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (716)
Q Consensus 85 N~iyea~~d~~r~~~P~-~sd~~~~reFIraKY~eKrF~~~k 125 (716)
|+|||+.++.....+|. .++...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999998765443444 356778889999999999998763
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=231.39 Aligned_cols=88 Identities=32% Similarity=0.664 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCC-C--ceeeeccCCCCHHHHHHHHhcChH
Q 005051 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (716)
Q Consensus 6 e~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItmDkWt~eEVe~Lq~gGN~ 82 (716)
.+++++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|++++|+.|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 4578999999999999999999999999999999999999999999999998 3 899999999999999999999999
Q ss_pred HHHHHHhhcCc
Q 005051 83 RAREIYLKDWD 93 (716)
Q Consensus 83 rAN~iyea~~d 93 (716)
++|++|++...
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=83.94 E-value=1.4 Score=43.78 Aligned_cols=49 Identities=16% Similarity=0.432 Sum_probs=37.9
Q ss_pred CCCCCCcCCCCCCCCeeEecceeheehhhhhhhhcCCCceeeeccCCCCHHHHHHHHhcChH
Q 005051 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQ 82 (716)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSItmDkWt~eEVe~Lq~gGN~ 82 (716)
|.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-+.
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~~ 196 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVRR 196 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTTS
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHhC
Confidence 455799999998777889999999999996421 4788888888654443
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=53.22 E-value=7.9 Score=30.29 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=30.1
Q ss_pred CCCCCcCCCCC-CCCeeEecceeheehhhhhhhhcCC
Q 005051 22 PNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (716)
Q Consensus 22 gNk~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (716)
..+.|.+|++. -|.|=.-..|..||-.|.-.++..+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56899999984 6789988889999999988776654
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=52.86 E-value=7.9 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCCcCCCCC-CCCeeEecceeheehhhhhhhhcCC
Q 005051 24 RRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (716)
Q Consensus 24 k~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (716)
+.|++|+.. -|.|=.-..|-.||-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 579999985 6799999899999999987655543
No 18
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=46.43 E-value=18 Score=34.33 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=22.0
Q ss_pred CCCCCCCcCCCCCCCC-eeEecceeheehhhhhhh
Q 005051 20 LPPNRRCINCNSLGPQ-YVCTNFWTFVCMTCSGIH 53 (716)
Q Consensus 20 ~PgNk~CADCGa~~P~-WaSvnfGVFVCi~CSGIH 53 (716)
...-..|.+||.+=|. =.-.--++-.|+.|...|
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 3556899999985321 011122577899999875
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=44.88 E-value=13 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCCCCCcCCCC-CCCCeeEecceeheehhhhhhhhcCC
Q 005051 21 PPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (716)
Q Consensus 21 PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (716)
.....|++|+. .-|.|-.-..|-.||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 35689999998 46899998899999999987766544
No 20
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=43.02 E-value=11 Score=31.24 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCCCCcCCCCC-CCCeeEecceeheehhhhhhhhcCC
Q 005051 20 LPPNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (716)
Q Consensus 20 ~PgNk~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (716)
......|++|+.. -|.|=.-..|-.||-.|.-..+..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 3567899999984 6799998899999999987666544
No 21
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=40.98 E-value=16 Score=31.17 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecceeheehhhhh
Q 005051 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSG 51 (716)
Q Consensus 10 ~ekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSG 51 (716)
.++.++++ ........|.-||........ .||+.|-.|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45566666 556788899999987666555 59999999963
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=37.57 E-value=19 Score=32.87 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=27.2
Q ss_pred CCCCcCCCC-CCCCeeEecceeheehhhhhhhhc
Q 005051 23 NRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 23 Nk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
-+.|++||+ .-|.|-.-..|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 478999998 478999888899999999876643
No 23
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=30.89 E-value=19 Score=33.57 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhcChHHHHHHHhhcC
Q 005051 67 KFTSQEVEALQNGGNQRAREIYLKDW 92 (716)
Q Consensus 67 kWt~eEVe~Lq~gGN~rAN~iyea~~ 92 (716)
.|+++|+++|+..++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988876654
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=30.44 E-value=9.4 Score=34.91 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCCee-Eecceeheehhhhhh
Q 005051 22 PNRRCINCNSLGPQYV-CTNFWTFVCMTCSGI 52 (716)
Q Consensus 22 gNk~CADCGa~~P~Wa-SvnfGVFVCi~CSGI 52 (716)
+...|.+||...-.+. .-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4568999998644443 569999999999864
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=28.95 E-value=26 Score=30.38 Aligned_cols=31 Identities=13% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
|++.|.=||.... ...|||+.|..|.+..|.
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997642 468999999999998764
No 26
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.44 E-value=17 Score=33.17 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCCCCcCCCCCCCC-eeEecceeheehhhhhhh
Q 005051 22 PNRRCINCNSLGPQ-YVCTNFWTFVCMTCSGIH 53 (716)
Q Consensus 22 gNk~CADCGa~~P~-WaSvnfGVFVCi~CSGIH 53 (716)
.-..|.+||.+=|. -.-.--++-.|+.|...+
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 35799999985321 111222577899999865
No 27
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=27.40 E-value=29 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.670 Sum_probs=26.1
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
.+..+.|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999753 3589999999999998875
No 28
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=25.86 E-value=36 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=25.9
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
.+..|.=||... ....|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999764 3589999999999998775
No 29
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.62 E-value=24 Score=33.69 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=24.7
Q ss_pred CCCCCcCCCCC-----CCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSL-----GPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~-----~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
+.+.|+-|+.+ +.--.|.+=...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56899999985 45555666677888888866543
No 30
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=25.39 E-value=32 Score=37.12 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
.+..|.=||....- ..|||..|..|.+..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 46789999986543 58999999999998765
No 31
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=24.95 E-value=30 Score=29.34 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCCCcCCCCC-CCCeeE--ecceeheehhhhhhhhcC
Q 005051 22 PNRRCINCNSL-GPQYVC--TNFWTFVCMTCSGIHREF 56 (716)
Q Consensus 22 gNk~CADCGa~-~P~WaS--vnfGVFVCi~CSGIHR~L 56 (716)
....|++|+.. -|.|=. -.-| .||-.|.-.+|..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 45799999984 688988 6777 7999998666553
No 32
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=24.56 E-value=40 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
+...|.=||... ....||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 567899999764 3579999999999998875
No 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=23.45 E-value=34 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=26.2
Q ss_pred CCCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
+.+..|.=||.... ...||++.|..|++..|.
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997643 468999999999998865
No 34
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=22.07 E-value=38 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
.+.+..|.=||... ....|||+.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999753 3589999999999998865
No 35
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=21.92 E-value=43 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.552 Sum_probs=25.2
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
....|.=||... ....||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 457899999764 2579999999999998765
No 36
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=21.86 E-value=81 Score=23.93 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=29.9
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhh--hhhhcCCCceeeec
Q 005051 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCS--GIHREFTHRVKSVS 64 (716)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CS--GIHR~LGhrVKSIt 64 (716)
+++.|..-+ ....+.|..=+..||..|. +-|| +|+|..|.
T Consensus 7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 48 (53)
T 2did_A 7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR--AHTVVPLS 48 (53)
T ss_dssp SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT--TSCEEECC
T ss_pred CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC--CCcEeeHH
Confidence 456776665 5677888888999999997 5676 57777765
No 37
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=21.67 E-value=42 Score=29.99 Aligned_cols=29 Identities=21% Similarity=0.637 Sum_probs=23.7
Q ss_pred CCCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
..|.=||.... ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997542 468999999999998765
No 38
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.37 E-value=25 Score=30.48 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=27.4
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecceeheehhhhhh
Q 005051 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGI 52 (716)
Q Consensus 10 ~ekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGI 52 (716)
.++.++++ ......-.|..||... --...-|++.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCCE
Confidence 34455555 3455678999999743 22345789999999743
No 39
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.87 E-value=33 Score=36.03 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCcCCCCCCCCe-eEecceeheehhhhhhh
Q 005051 24 RRCINCNSLGPQY-VCTNFWTFVCMTCSGIH 53 (716)
Q Consensus 24 k~CADCGa~~P~W-aSvnfGVFVCi~CSGIH 53 (716)
..|-+||...|.- ....-|-.||.+|.-|.
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 4799999975422 23456899999998765
No 40
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.44 E-value=46 Score=26.72 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=20.6
Q ss_pred CCCcCCCCCCCCeeEecceeheehhhhhhh
Q 005051 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIH 53 (716)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIH 53 (716)
.+|-+|+..... ....-|.+||..|.-+-
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCEE
Confidence 479999986522 23456899999996553
No 41
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=20.42 E-value=57 Score=28.36 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=23.0
Q ss_pred CCcCCCCCCCCeeEecceeheehhhhhhhhc
Q 005051 25 RCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (716)
Q Consensus 25 ~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (716)
.|.=||.... ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997542 579999999999998765
Done!