Query 005052
Match_columns 716
No_of_seqs 331 out of 1004
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.7 9.9E-19 3.4E-23 153.8 5.4 63 466-528 10-72 (89)
2 2dmn_A Homeobox protein TGIF2L 99.7 4.4E-18 1.5E-22 146.0 6.4 65 460-524 6-70 (83)
3 1x2n_A Homeobox protein pknox1 99.7 2.9E-17 9.9E-22 136.8 6.8 66 460-525 6-71 (73)
4 3k2a_A Homeobox protein MEIS2; 99.7 3.4E-17 1.2E-21 135.6 5.7 62 466-527 3-64 (67)
5 1du6_A PBX1, homeobox protein 99.6 1.6E-16 5.5E-21 129.0 6.9 62 461-522 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.6 2.5E-16 8.6E-21 134.9 6.7 63 462-524 2-64 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 4.5E-16 1.5E-20 129.6 7.0 63 462-524 2-64 (73)
8 1k61_A Mating-type protein alp 99.6 8.7E-16 3E-20 123.3 6.5 58 465-522 2-59 (60)
9 1le8_B Mating-type protein alp 99.6 1E-15 3.4E-20 131.1 6.6 62 463-524 4-65 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 1.8E-15 6.2E-20 130.2 7.1 61 460-520 26-86 (87)
11 2ecc_A Homeobox and leucine zi 99.5 4.6E-14 1.6E-18 120.9 6.4 59 463-524 5-63 (76)
12 1akh_A Protein (mating-type pr 99.4 6.7E-14 2.3E-18 112.4 5.9 57 461-520 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.4 1.2E-13 4.2E-18 112.8 6.7 61 460-523 2-62 (66)
14 2dmu_A Homeobox protein goosec 99.4 3.6E-13 1.2E-17 111.3 7.1 60 460-522 6-65 (70)
15 2da4_A Hypothetical protein DK 99.4 9.1E-14 3.1E-18 117.7 3.7 62 460-521 7-69 (80)
16 2cra_A Homeobox protein HOX-B1 99.4 4.2E-13 1.4E-17 111.0 7.4 61 460-523 6-66 (70)
17 2e1o_A Homeobox protein PRH; D 99.4 4.2E-13 1.4E-17 111.0 7.0 60 460-522 6-65 (70)
18 2hdd_A Protein (engrailed home 99.4 3.3E-13 1.1E-17 108.7 6.2 58 461-521 3-60 (61)
19 1ig7_A Homeotic protein MSX-1; 99.4 4.1E-13 1.4E-17 106.8 6.6 57 462-521 1-57 (58)
20 2da2_A Alpha-fetoprotein enhan 99.4 5.3E-13 1.8E-17 110.0 7.3 60 460-522 6-65 (70)
21 1jgg_A Segmentation protein EV 99.4 4.9E-13 1.7E-17 107.4 6.4 58 462-522 2-59 (60)
22 2djn_A Homeobox protein DLX-5; 99.4 4.6E-13 1.6E-17 110.8 6.3 60 460-522 6-65 (70)
23 2dmq_A LIM/homeobox protein LH 99.4 6.7E-13 2.3E-17 112.0 7.4 60 460-522 6-65 (80)
24 2da1_A Alpha-fetoprotein enhan 99.4 4.5E-13 1.5E-17 110.5 6.1 60 460-522 6-65 (70)
25 2da3_A Alpha-fetoprotein enhan 99.4 4.8E-13 1.6E-17 112.5 6.4 60 460-522 16-75 (80)
26 2h1k_A IPF-1, pancreatic and d 99.4 5.6E-13 1.9E-17 108.2 6.5 59 461-522 3-61 (63)
27 2k40_A Homeobox expressed in E 99.4 4.9E-13 1.7E-17 109.6 5.9 59 462-523 2-60 (67)
28 2dmt_A Homeobox protein BARH-l 99.4 9.8E-13 3.3E-17 111.5 7.6 61 460-523 16-76 (80)
29 1fjl_A Paired protein; DNA-bin 99.4 8.6E-13 2.9E-17 111.9 7.1 60 460-522 17-76 (81)
30 2vi6_A Homeobox protein nanog; 99.4 8E-13 2.7E-17 106.8 6.5 58 461-521 3-60 (62)
31 3rkq_A Homeobox protein NKX-2. 99.3 9.7E-13 3.3E-17 103.9 6.4 56 462-520 3-58 (58)
32 2l7z_A Homeobox protein HOX-A1 99.3 1.1E-12 3.9E-17 109.5 7.2 61 460-523 6-66 (73)
33 1nk2_P Homeobox protein VND; h 99.3 1.6E-12 5.4E-17 109.5 7.6 61 460-523 8-68 (77)
34 2dms_A Homeobox protein OTX2; 99.3 1.4E-12 4.9E-17 110.3 7.1 59 460-521 6-64 (80)
35 2dn0_A Zinc fingers and homeob 99.3 1.4E-12 4.8E-17 109.6 6.7 60 460-522 7-66 (76)
36 2cue_A Paired box protein PAX6 99.3 1.7E-12 5.7E-17 110.1 7.2 61 460-523 6-66 (80)
37 1zq3_P PRD-4, homeotic bicoid 99.3 1.4E-12 4.7E-17 107.5 6.2 59 461-522 2-60 (68)
38 3a02_A Homeobox protein arista 99.3 1.6E-12 5.3E-17 104.5 6.2 55 465-522 3-57 (60)
39 1ahd_P Antennapedia protein mu 99.3 1.3E-12 4.6E-17 107.8 5.7 59 461-522 2-60 (68)
40 1ftt_A TTF-1 HD, thyroid trans 99.3 2E-12 7E-17 106.5 6.4 59 462-523 3-61 (68)
41 1wh5_A ZF-HD homeobox family p 99.3 2.2E-12 7.4E-17 110.4 6.7 62 460-521 16-78 (80)
42 1puf_A HOX-1.7, homeobox prote 99.3 3E-12 1E-16 107.8 7.4 61 460-523 12-72 (77)
43 2kt0_A Nanog, homeobox protein 99.3 3.1E-12 1.1E-16 108.9 7.3 60 460-522 21-80 (84)
44 1yz8_P Pituitary homeobox 2; D 99.3 7.5E-13 2.6E-17 108.9 3.4 59 461-522 3-61 (68)
45 2m0c_A Homeobox protein arista 99.3 4.2E-12 1.4E-16 105.4 7.3 59 461-522 9-67 (75)
46 1b8i_A Ultrabithorax, protein 99.3 3.1E-12 1.1E-16 109.0 6.2 60 461-523 20-79 (81)
47 1uhs_A HOP, homeodomain only p 99.3 3.9E-12 1.3E-16 105.7 6.5 59 462-522 2-60 (72)
48 2hi3_A Homeodomain-only protei 99.3 4.3E-12 1.5E-16 105.9 6.6 58 462-522 3-61 (73)
49 2da5_A Zinc fingers and homeob 99.3 5.1E-12 1.7E-16 106.2 6.8 57 463-522 9-65 (75)
50 3a01_A Homeodomain-containing 99.3 2.6E-12 8.8E-17 112.4 5.2 62 460-524 16-77 (93)
51 2ly9_A Zinc fingers and homeob 99.3 6.5E-12 2.2E-16 104.5 7.4 59 461-522 6-64 (74)
52 2d5v_A Hepatocyte nuclear fact 99.3 3.5E-12 1.2E-16 120.9 6.3 61 460-523 96-156 (164)
53 3a03_A T-cell leukemia homeobo 99.3 4.4E-12 1.5E-16 100.9 5.8 52 467-521 3-54 (56)
54 3nar_A ZHX1, zinc fingers and 99.3 6.2E-12 2.1E-16 110.2 7.2 65 461-528 25-89 (96)
55 2cuf_A FLJ21616 protein; homeo 99.3 6E-12 2.1E-16 110.0 6.6 60 460-522 6-80 (95)
56 3d1n_I POU domain, class 6, tr 99.3 6.6E-12 2.3E-16 118.0 7.2 59 460-521 92-150 (151)
57 3nau_A Zinc fingers and homeob 99.2 5.6E-12 1.9E-16 105.7 5.3 53 468-523 11-63 (66)
58 2r5y_A Homeotic protein sex co 99.2 5.9E-12 2E-16 108.5 5.5 60 460-522 27-86 (88)
59 2ecb_A Zinc fingers and homeob 99.2 1.1E-11 3.8E-16 108.8 6.9 55 464-521 14-68 (89)
60 1b72_A Protein (homeobox prote 99.2 9.5E-12 3.2E-16 109.1 5.6 60 460-522 33-92 (97)
61 2dmp_A Zinc fingers and homeob 99.2 2.2E-11 7.6E-16 105.8 6.5 55 464-521 16-70 (89)
62 1wh7_A ZF-HD homeobox family p 99.2 1.6E-11 5.5E-16 105.3 5.4 61 460-521 16-78 (80)
63 1au7_A Protein PIT-1, GHF-1; c 99.1 4E-11 1.4E-15 112.7 6.9 60 460-522 86-145 (146)
64 1e3o_C Octamer-binding transcr 99.1 4.4E-11 1.5E-15 113.7 6.7 60 460-522 100-159 (160)
65 2e19_A Transcription factor 8; 99.1 5.5E-11 1.9E-15 97.9 6.2 54 465-521 7-60 (64)
66 2cqx_A LAG1 longevity assuranc 99.1 3.2E-11 1.1E-15 101.3 4.5 60 461-523 8-68 (72)
67 2xsd_C POU domain, class 3, tr 99.1 4.8E-11 1.6E-15 114.3 6.1 61 460-523 98-158 (164)
68 2da6_A Hepatocyte nuclear fact 99.1 1.2E-10 4.1E-15 104.9 6.9 61 460-523 5-86 (102)
69 2l9r_A Homeobox protein NKX-3. 99.1 1.3E-10 4.5E-15 97.4 6.0 53 468-523 11-63 (69)
70 3l1p_A POU domain, class 5, tr 99.0 9.1E-11 3.1E-15 111.1 4.6 59 460-521 95-153 (155)
71 1wi3_A DNA-binding protein SAT 99.0 2.7E-10 9.2E-15 96.5 6.9 60 460-521 6-65 (71)
72 1lfb_A Liver transcription fac 99.0 2.1E-10 7.2E-15 102.2 5.3 60 461-523 9-89 (99)
73 1x2m_A LAG1 longevity assuranc 99.0 4.7E-10 1.6E-14 93.3 4.9 51 470-522 9-59 (64)
74 1mh3_A Maltose binding-A1 home 98.9 1.2E-09 4E-14 112.7 5.3 53 465-520 369-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.8 2.9E-09 1E-13 107.1 6.2 56 461-519 142-218 (221)
76 1ic8_A Hepatocyte nuclear fact 98.8 2.3E-09 7.8E-14 105.8 3.4 58 461-521 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.7 1.9E-08 6.4E-13 85.5 5.5 46 470-518 14-59 (71)
78 2nzz_A Penetratin conjugated G 95.6 0.0025 8.5E-08 48.1 0.5 20 506-525 1-20 (37)
79 2ys9_A Homeobox and leucine zi 90.6 0.13 4.4E-06 43.9 2.6 44 468-514 13-56 (70)
80 1tty_A Sigma-A, RNA polymerase 68.6 5.3 0.00018 33.4 4.4 56 467-526 18-73 (87)
81 1hlv_A CENP-B, major centromer 67.4 10 0.00035 33.2 6.2 50 463-518 3-52 (131)
82 3hug_A RNA polymerase sigma fa 66.9 5.1 0.00018 33.6 4.0 49 467-523 37-85 (92)
83 1ku3_A Sigma factor SIGA; heli 61.6 6.1 0.00021 31.7 3.3 54 467-524 10-64 (73)
84 3mzy_A RNA polymerase sigma-H 58.0 8.4 0.00029 33.7 3.9 48 467-523 109-156 (164)
85 2elh_A CG11849-PA, LD40883P; s 56.7 12 0.00041 31.3 4.5 45 461-513 16-60 (87)
86 2o8x_A Probable RNA polymerase 56.5 8.2 0.00028 29.9 3.2 49 467-523 15-63 (70)
87 2glo_A Brinker CG9653-PA; prot 55.9 14 0.00048 28.7 4.5 46 465-514 3-48 (59)
88 2p7v_B Sigma-70, RNA polymeras 54.3 7 0.00024 30.9 2.5 54 467-524 5-58 (68)
89 3t72_q RNA polymerase sigma fa 52.8 19 0.00066 31.6 5.3 59 467-529 19-77 (99)
90 1fse_A GERE; helix-turn-helix 48.9 26 0.00089 27.3 5.0 52 464-524 8-59 (74)
91 1s7o_A Hypothetical UPF0122 pr 47.2 24 0.00083 31.3 5.1 49 467-523 22-70 (113)
92 1rp3_A RNA polymerase sigma fa 43.8 14 0.00047 34.6 3.1 49 467-523 187-235 (239)
93 1tc3_C Protein (TC3 transposas 43.7 18 0.0006 25.4 3.0 42 467-516 5-46 (51)
94 1je8_A Nitrate/nitrite respons 41.9 23 0.00078 29.3 3.8 52 467-527 21-72 (82)
95 1or7_A Sigma-24, RNA polymeras 41.2 18 0.00063 32.8 3.5 49 467-523 140-188 (194)
96 1iuf_A Centromere ABP1 protein 41.0 30 0.001 31.6 4.8 52 461-515 5-60 (144)
97 1xsv_A Hypothetical UPF0122 pr 39.5 29 0.00098 30.7 4.3 51 467-525 25-75 (113)
98 1x3u_A Transcriptional regulat 38.3 21 0.00073 28.3 3.0 51 468-527 17-67 (79)
99 2rnj_A Response regulator prot 34.7 49 0.0017 27.5 4.8 51 467-526 29-79 (91)
100 1p4w_A RCSB; solution structur 34.2 73 0.0025 27.6 6.0 50 465-523 32-81 (99)
101 3c57_A Two component transcrip 31.7 31 0.0011 29.2 3.1 48 466-522 26-73 (95)
102 2q1z_A RPOE, ECF SIGE; ECF sig 30.5 15 0.0005 33.3 0.9 48 467-522 135-182 (184)
103 1l9z_H Sigma factor SIGA; heli 26.5 58 0.002 35.6 4.9 54 467-524 375-429 (438)
104 1jko_C HIN recombinase, DNA-in 26.5 33 0.0011 24.4 2.1 41 467-515 5-45 (52)
105 2a6c_A Helix-turn-helix motif; 26.3 51 0.0017 26.7 3.4 27 494-520 34-60 (83)
106 3lsg_A Two-component response 25.4 82 0.0028 26.3 4.7 41 472-515 3-43 (103)
107 1hlv_A CENP-B, major centromer 25.1 1.7E+02 0.0058 25.2 6.8 58 461-519 66-130 (131)
108 1l0o_C Sigma factor; bergerat 25.0 15 0.00052 34.1 0.0 46 467-520 198-243 (243)
109 2q0o_A Probable transcriptiona 24.7 54 0.0018 31.6 3.8 49 465-522 173-221 (236)
110 1wlx_A Alpha-actinin 4; three- 24.5 1.7E+02 0.0059 27.3 7.0 69 341-411 45-116 (129)
111 3b7h_A Prophage LP1 protein 11 24.2 47 0.0016 25.8 2.8 23 494-516 23-45 (78)
112 3clo_A Transcriptional regulat 22.8 79 0.0027 31.0 4.6 53 466-527 196-248 (258)
113 2jpc_A SSRB; DNA binding prote 22.6 61 0.0021 24.4 3.0 32 495-526 17-48 (61)
114 2xi8_A Putative transcription 22.5 38 0.0013 25.3 1.8 23 494-516 17-39 (66)
115 2jn6_A Protein CGL2762, transp 22.4 83 0.0028 26.2 4.1 45 465-515 3-47 (97)
116 2rn7_A IS629 ORFA; helix, all 22.3 1.4E+02 0.0047 25.2 5.5 49 465-514 4-53 (108)
117 2r1j_L Repressor protein C2; p 22.1 39 0.0013 25.4 1.8 23 494-516 21-43 (68)
118 3qq6_A HTH-type transcriptiona 21.9 54 0.0018 26.4 2.7 27 494-520 26-52 (78)
119 1zug_A Phage 434 CRO protein; 21.2 40 0.0014 25.6 1.8 24 494-517 19-42 (71)
120 3bd1_A CRO protein; transcript 20.5 45 0.0015 26.6 1.9 23 494-516 14-36 (79)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-19 Score=153.81 Aligned_cols=63 Identities=49% Similarity=0.800 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHHH
Q 005052 466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 528 (716)
Q Consensus 466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~~ 528 (716)
.-||++++++|++||.+|..||||++++|.+||++||||++||+|||+|+|+|.|++++++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDG 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 349999999999999999999999999999999999999999999999999999998875543
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=146.02 Aligned_cols=65 Identities=42% Similarity=0.784 Sum_probs=60.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
.++|+|+.|+++++.+|+.||.+|..||||+.++|.+||.+|||+..||++||+|+|+|.|++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 34556667999999999999999999999999999999999999999999999999999998765
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.9e-17 Score=136.76 Aligned_cols=66 Identities=41% Similarity=0.724 Sum_probs=60.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHH
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 525 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmie 525 (716)
..+|+++.|++.++.+|+.||.+|..+|||+.++|..||.+|||++.||.+||+|+|+|.|+++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 345666679999999999999999999999999999999999999999999999999999998763
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.4e-17 Score=135.59 Aligned_cols=62 Identities=48% Similarity=0.940 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHH
Q 005052 466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 527 (716)
Q Consensus 466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~ 527 (716)
.+||++++.+|+.||.+|..||||+..+|..||.+|||+..||++||+|+|+|.|++++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999987543
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.6e-16 Score=129.02 Aligned_cols=62 Identities=35% Similarity=0.646 Sum_probs=58.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|+++.|+++++.+|+.||.+|..+|||+.+++..||..|||+..||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45677789999999999999999999999999999999999999999999999999999873
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=2.5e-16 Score=134.92 Aligned_cols=63 Identities=37% Similarity=0.691 Sum_probs=58.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
+|+|+.|++.++.+|+.||.+|..+|||+..+|..||+.+||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 566778999999999999999999999999999999999999999999999999999988765
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.62 E-value=4.5e-16 Score=129.58 Aligned_cols=63 Identities=37% Similarity=0.691 Sum_probs=59.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
+|+++.|++.++.+|+.||.+|..+|||+..++..||..|||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 567778999999999999999999999999999999999999999999999999999987653
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.60 E-value=8.7e-16 Score=123.26 Aligned_cols=58 Identities=26% Similarity=0.455 Sum_probs=55.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+++|+++++.+|+.||..|..+|||+..++..||+++||++.||.+||+|+|+|.|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 5679999999999999999999999999999999999999999999999999998763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=1e-15 Score=131.05 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=57.1
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
+++++|+++++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|+..+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 33445999999999999999999999999999999999999999999999999999988654
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=130.16 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=56.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
.++|+++.|+++++.+|+.||..|..+|||+..+|..||+.|||++.||.+||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4455566699999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=4.6e-14 Score=120.94 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=54.6
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
+++++|+++++.+|+.||.. +|||+..++.+||+.|||++.||.+||+|+|.|.|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999998 799999999999999999999999999999999887654
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.45 E-value=6.7e-14 Score=112.40 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
++|+++.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4555667999999999999998 69999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.44 E-value=1.2e-13 Score=112.85 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=56.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|++..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 35677778999999999999998 79999999999999999999999999999999988754
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.6e-13 Score=111.26 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 35666777999999999999998 7999999999999999999999999999999998764
No 15
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.1e-14 Score=117.68 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEH-FLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH-~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|..|+.+++.+|+.||..+ ..+|||+..++..||+.+||++.||.+||+|+|+|.++
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 345566669999999999999885 44599999999999999999999999999999999876
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=4.2e-13 Score=110.99 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+++.|+++++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45566777999999999999998 79999999999999999999999999999999998743
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=4.2e-13 Score=111.01 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+++.|+++++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 45566777999999999999988 7999999999999999999999999999999998764
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.39 E-value=3.3e-13 Score=108.72 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=51.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4567777999999999999998 799999999999999999999999999999999876
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=4.1e-13 Score=106.82 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=53.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356777999999999999998 799999999999999999999999999999999865
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=5.3e-13 Score=110.05 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
..+|+++.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 34566667999999999999998 7999999999999999999999999999999999874
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.38 E-value=4.9e-13 Score=107.41 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466777999999999999998 7999999999999999999999999999999998763
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-13 Score=110.77 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|++..|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 45566677999999999999987 7999999999999999999999999999999998874
No 23
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.7e-13 Score=112.01 Aligned_cols=60 Identities=22% Similarity=0.427 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 45667777999999999999998 7999999999999999999999999999999999874
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=110.46 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
..+|+++.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 45666777999999999999998 7999999999999999999999999999999998764
No 25
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-13 Score=112.54 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45566667999999999999998 6999999999999999999999999999999998764
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.37 E-value=5.6e-13 Score=108.17 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=53.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4566777999999999999998 7999999999999999999999999999999998763
No 27
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.37 E-value=4.9e-13 Score=109.58 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=54.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
+|++..|++.++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 567778999999999999987 89999999999999999999999999999999987754
No 28
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.8e-13 Score=111.52 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
..+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34566667999999999999998 79999999999999999999999999999999998743
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.36 E-value=8.6e-13 Score=111.94 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.|+.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 34566667999999999999988 7999999999999999999999999999999998774
No 30
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.36 E-value=8e-13 Score=106.80 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4566677999999999999988 799999999999999999999999999999999876
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.35 E-value=9.7e-13 Score=103.92 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=51.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456667999999999999986 79999999999999999999999999999999864
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.35 E-value=1.1e-12 Score=109.50 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34566667999999999999998 79999999999999999999999999999999988743
No 33
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.34 E-value=1.6e-12 Score=109.50 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+++.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34555666999999999999998 79999999999999999999999999999999988744
No 34
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=110.32 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=54.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
..+|+|+.|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk 64 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhH
Confidence 45566667999999999999998 799999999999999999999999999999999876
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=109.56 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.+.+.|+.|+++++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34455677999999999999988 7999999999999999999999999999999998874
No 36
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-12 Score=110.08 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+|+.|+++++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 45566777999999999999987 79999999999999999999999999999999998754
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=1.4e-12 Score=107.53 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4566777999999999999987 7999999999999999999999999999999998764
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.32 E-value=1.6e-12 Score=104.47 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
|..|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 467999999999999988 7999999999999999999999999999999998874
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.32 E-value=1.3e-12 Score=107.75 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 3566777999999999999998 7999999999999999999999999999999998763
No 40
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.31 E-value=2e-12 Score=106.48 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456667999999999999998 79999999999999999999999999999999987643
No 41
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.31 E-value=2.2e-12 Score=110.39 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFE-HFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~e-H~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+.+++.+|+.+|.. ++.+|||+..++.+||..+||++.||++||+|+|.|.++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34566667999999999999886 566799999999999999999999999999999999875
No 42
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.31 E-value=3e-12 Score=107.82 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
..+|+++.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.++..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 34556667999999999999998 79999999999999999999999999999999988754
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=108.88 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566667999999999999988 7999999999999999999999999999999998864
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.30 E-value=7.5e-13 Score=108.91 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=54.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 4566777999999999999987 7999999999999999999999999999999998764
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.29 E-value=4.2e-12 Score=105.43 Aligned_cols=59 Identities=24% Similarity=0.367 Sum_probs=54.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|+++.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 4455666999999999999998 7999999999999999999999999999999998874
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.28 E-value=3.1e-12 Score=109.00 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=52.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566667999999999999998 79999999999999999999999999999999988753
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=3.9e-12 Score=105.72 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++++.|+..++.+|+.+|.. .+|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 356677999999999999973 16999999999999999999999999999999998763
No 48
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=4.3e-12 Score=105.89 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=52.9
Q ss_pred CCCCCCCChhHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 462 WRPQRGLPERSVSVLRAWLF-EHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~-eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+++++.|+++++.+|+.+|. . +|||+..++..||+.+||++.||.+||+|+|.|.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 35566799999999999998 4 6999999999999999999999999999999998763
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.1e-12 Score=106.25 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+++++|+.+++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45567999999999999998 7999999999999999999999999999999998763
No 50
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.27 E-value=2.6e-12 Score=112.35 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34556667999999999999998 799999999999999999999999999999999887543
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.27 E-value=6.5e-12 Score=104.54 Aligned_cols=59 Identities=17% Similarity=0.411 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+++.|+.|+++++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4566777999999999999998 7999999999999999999999999999999998863
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.27 E-value=3.5e-12 Score=120.89 Aligned_cols=61 Identities=31% Similarity=0.384 Sum_probs=53.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+|..|++.++.+|+.||.. +|||+..+|..||+.+||++.||.+||+|+|+|.|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 45666677999999999999999 69999999999999999999999999999999998743
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=100.85 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.|+++++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 5899999999999998 799999999999999999999999999999999876
No 54
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=110.22 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=57.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHHH
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 528 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~~ 528 (716)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||+++||++.||.+||+|+|.|.|+..++-+.
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~ 89 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYY 89 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHH
Confidence 4566777999999999999998 7999999999999999999999999999999999987765543
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=6e-12 Score=109.99 Aligned_cols=60 Identities=18% Similarity=0.402 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------LSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTG---------------LS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|..|++.++.+|+.||.+ +|||+..+++.||..+| |+..||.+||+|+|+|.|+.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 34566667999999999999999 79999999999999999 99999999999999998764
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.25 E-value=6.6e-12 Score=118.03 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=53.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+..++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|+|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455556999999999999998 799999999999999999999999999999999876
No 57
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.24 E-value=5.6e-12 Score=105.66 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
-+++++..|+.+|.. +|||+..++.+||+.||||+.||.+||+|+|.|.|+..
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 489999999999999 79999999999999999999999999999999988754
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.24 E-value=5.9e-12 Score=108.50 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
..+|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 35666777999999999999987 7999999999999999999999999999999998763
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.1e-11 Score=108.79 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=51.3
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+.+.|+.+++.+|+.||.. +|||+..+|.+||..|||++.||.+||+|+|.|.++
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 4457999999999999998 799999999999999999999999999999998765
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=9.5e-12 Score=109.11 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=52.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 35566777999999999999987 7999999999999999999999999999999998764
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=105.79 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=50.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+.++++.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|+|.++
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 3445999999999999998 799999999999999999999999999999998765
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.18 E-value=1.6e-11 Score=105.33 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+.+++.+|+ -|.+++- +|||+..++.+||..+||++.||++||+|+|.|.++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345666679999999999 5777433 899999999999999999999999999999999875
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.14 E-value=4e-11 Score=112.68 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=53.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999998763
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.13 E-value=4.4e-11 Score=113.66 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=52.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999998874
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=5.5e-11 Score=97.89 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=49.5
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
...+.++++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 344679999999999977 799999999999999999999999999999999765
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=3.2e-11 Score=101.30 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 461 PWRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
+.+++++++.+++.+|+..| .. ++||+..++..||+++||++.||.+||+|+|.|.|+.+
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34566678999999999999 66 79999999999999999999999999999999988643
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.12 E-value=4.8e-11 Score=114.30 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34556667999999999999998 79999999999999999999999999999999988744
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=104.88 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=54.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhchhhhhh
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQT---------------------GLSRSQVSNWFINARVR 518 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqT---------------------GLS~~QVsNWFiNaRrR 518 (716)
.++|+|..|++.++.+|+.+|.. +|||+..+|++||..+ .||..+|.+||+|+|.|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34556666999999999999998 7999999999999999 79999999999999999
Q ss_pred hchhh
Q 005052 519 LWKPM 523 (716)
Q Consensus 519 lkKpm 523 (716)
.++..
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87654
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=97.43 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
++..++..|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.|+..
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 789999999999988 79999999999999999999999999999999988754
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.04 E-value=9.1e-11 Score=111.11 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=54.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 45566667999999999999986 799999999999999999999999999999999876
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=2.7e-10 Score=96.51 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005052 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+.++..+|+..|..- +|||+.++++.||++|||++.+|..||+|+|.-++.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 578888889999999999999982 599999999999999999999999999999987754
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.01 E-value=2.1e-10 Score=102.20 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=51.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhchhhhhhh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQ------------------TG---LSRSQVSNWFINARVRL 519 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkq------------------TG---LS~~QVsNWFiNaRrRl 519 (716)
.+|+|..|++.++.+|+.+|.. +|||+..+|.+||.. +| |+..||.+||+|+|.+.
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3455556999999999999988 799999999999999 88 99999999999999998
Q ss_pred chhh
Q 005052 520 WKPM 523 (716)
Q Consensus 520 kKpm 523 (716)
++..
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 7643
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.95 E-value=4.7e-10 Score=93.32 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 470 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 470 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
..++.+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.|.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 35688999999543 7999999999999999999999999999999998763
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.87 E-value=1.2e-09 Score=112.70 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
++.|.+.++..|+++|.. ||||+..+|.+||++|||+++||++||+|+|+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 355899999999999988 79999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.82 E-value=2.9e-09 Score=107.06 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhchhhhhhh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 519 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTG---------------------LS~~QVsNWFiNaRrRl 519 (716)
.+|.|..|++.++.+|+.||.. +|||+..+|++||+.+| ||..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3445556999999999999998 79999999999999998 89999999999999985
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.77 E-value=2.3e-09 Score=105.77 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhchhhhhhh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 519 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTG---------------------LS~~QVsNWFiNaRrRl 519 (716)
.+|+|..|++.++.+|+.+|.. +|||+..+|.+||..++ ||..||.+||+|+|+|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3455556999999999999999 69999999999999999 99999999999999997
Q ss_pred ch
Q 005052 520 WK 521 (716)
Q Consensus 520 kK 521 (716)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.9e-08 Score=85.50 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhh
Q 005052 470 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 518 (716)
Q Consensus 470 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrR 518 (716)
++++.+|++.|.. ||||+.+++.+||..+||++.+|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 799999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.60 E-value=0.0025 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.1
Q ss_pred hhhhhhchhhhhhhchhhHH
Q 005052 506 SQVSNWFINARVRLWKPMVE 525 (716)
Q Consensus 506 ~QVsNWFiNaRrRlkKpmie 525 (716)
.||.+||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999886653
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.57 E-value=0.13 Score=43.87 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchh
Q 005052 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 514 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiN 514 (716)
.++...++|++.|.+ |-...+++...|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 355667899999999 47889999999999999999999999964
No 80
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=68.57 E-value=5.3 Score=33.38 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 526 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee 526 (716)
.||+..+.+|...|.-.-..++ .-.++|..+|+|+..|.+|...+++++++.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999887751000133 3568999999999999999999999998766443
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.38 E-value=10 Score=33.21 Aligned_cols=50 Identities=26% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhh
Q 005052 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 518 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrR 518 (716)
++++.|+.+.+..+-.++.+ ++.++ ..++|+..|+++..|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 35677999998877777766 46655 2368999999999999998766544
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=66.93 E-value=5.1 Score=33.55 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.+|.-.+.+ .| .-.++|+.+|++...|.++...+|+++++.+
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887665 33 3578999999999999999999999997654
No 83
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.64 E-value=6.1 Score=31.70 Aligned_cols=54 Identities=17% Similarity=-0.005 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc-hhhH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 524 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk-Kpmi 524 (716)
.||+..+.+|...|.-.-..++ .-.++|+.+|+|+..|.+|...++++++ ..+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 4899999999887751000133 3358999999999999999999999998 5543
No 84
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=57.97 E-value=8.4 Score=33.72 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.++. .+.+ .| .-.++|+.+|+|...|.++...+|+++++.+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999998 4444 44 3477999999999999999999999987654
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=56.70 E-value=12 Score=31.29 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhch
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFI 513 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFi 513 (716)
++++++.++.+.+......+.. .. ...++|+.+|+++..|.+|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3445667988886544444433 12 256899999999999999964
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.52 E-value=8.2 Score=29.89 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.+|...+.+ .+ .-.++|+..|+|+..|.+|...+|+++++-+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999887665 33 3468999999999999999999999987644
No 87
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=55.87 E-value=14 Score=28.66 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 514 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiN 514 (716)
++.++.+.+......+.. .++......++|+..|+++.+|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888887666554433 2221223679999999999999999653
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.31 E-value=7 Score=30.90 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
.||+..+.+|...+.-.-...+ .-.++|+.+|+|+..|.++...+++++++.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877611000133 34679999999999999999999999987553
No 89
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=52.77 E-value=19 Score=31.55 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHHHH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL 529 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~~~ 529 (716)
.||++.+.++.-.|...-..++ .-.++|+.+|+|+..|.+....+++++++.+..+.+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~ 77 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 77 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877752111133 4578999999999999999999999998877655443
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.86 E-value=26 Score=27.30 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005052 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
....|++....+|..+ .+ .+ .-.++|+.+|+|+..|..+....+++++....
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 3456999999999774 33 33 34679999999999999999999999876543
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=47.19 E-value=24 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.++...+.+ .+ .-.++|+.+|+|+..|.+|...+|.++++.+
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887766 33 3478999999999999999999999987655
No 92
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=43.80 E-value=14 Score=34.58 Aligned_cols=49 Identities=29% Similarity=0.285 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.+|...+.+ .+ .-.++|+.+|+|...|..+...+|+++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 34 3467999999999999999999999997644
No 93
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.75 E-value=18 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaR 516 (716)
.++++....+...+.+ .+ ...++|+.+|+++.-|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4777776444444443 23 356899999999999999985443
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=41.91 E-value=23 Score=29.27 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 527 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~ 527 (716)
.|++..+.+|... .+ .+ .-.++|+.+|++...|.++..++|++++.....+.
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 72 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEA 72 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4899999999874 33 33 45789999999999999999999999976654443
No 95
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.19 E-value=18 Score=32.82 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.||+..+.+|.-.+.+ .+ .-.++|+.+|+|...|.++...+|+++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GL----SYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999999877665 33 2367999999999999999999999987643
No 96
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.98 E-value=30 Score=31.58 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH-Hh--CCChhhhhhhchhh
Q 005052 461 PWRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILAR-QT--GLSRSQVSNWFINA 515 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LAk-qT--GLS~~QVsNWFiNa 515 (716)
++++|+.|+-+++..+..|+ .+ ||-.+..+....|+ +. ++++..|+.|..|+
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46778889999999999998 45 57655443333222 67 78999999998663
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=39.47 E-value=29 Score=30.69 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 525 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmie 525 (716)
.||+..+.++.-.+.+ .+ .-.++|+.+|+|+.-|.++...+|+++++-+.+
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887665 33 347899999999999999999999999876533
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.27 E-value=21 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHH
Q 005052 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 527 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~ 527 (716)
|++....+|.-+ .+ .+ .-.++|+.+|++...|.++...++++++.....+.
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l 67 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHL 67 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 688888888764 33 33 23589999999999999999999999987655443
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.68 E-value=49 Score=27.49 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 526 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee 526 (716)
.|++..+.+|.- +.+ .+. -.++|+.+|++...|.++..++|++++.....+
T Consensus 29 ~Lt~~e~~vl~l-~~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 79 (91)
T 2rnj_A 29 MLTEREMEILLL-IAK----GYS----NQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 (91)
T ss_dssp GCCSHHHHHHHH-HHT----TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHH
T ss_pred cCCHHHHHHHHH-HHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 489999999977 444 332 257899999999999999999999997654433
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.20 E-value=73 Score=27.64 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
...|++..+.+|.-+ .+ .+ .-.++|+.+|++..-|.++..++++|+.-.-
T Consensus 32 ~~~Lt~re~~Vl~l~-~~----G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF-AE----GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHH-HH----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 456999999999664 44 22 2378999999999999999999999986443
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.74 E-value=31 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=39.0
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
..|++..+.+|.-. .+ .+ .-.++|+.+|+|...|.++..++|+|++..
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 35999999999885 44 33 347899999999999999999999998754
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.53 E-value=15 Score=33.29 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.||+..+.+|.-.+.+. .+| .++|+.+|+|+..|.++...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 38999999998877763 233 4689999999999999999999998763
No 103
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=26.49 E-value=58 Score=35.63 Aligned_cols=54 Identities=17% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc-hhhH
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 524 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk-Kpmi 524 (716)
.|+++.+.||...|.-.-..++ .-.++|+.+|+|+..|..+...+++|++ .++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~ 429 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 429 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhh
Confidence 4899999999776651101233 5678999999999999999999999998 5543
No 104
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.49 E-value=33 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhh
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 515 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNa 515 (716)
.++.+....+...+.+ .. ...++|+.+|+++.-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4655554444444443 22 35689999999999999998643
No 105
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.32 E-value=51 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 494 KHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
..+||+.+|+++..|++|..+.+.+..
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~~~~ 60 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKIDLFS 60 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGGGCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 578999999999999999988764333
No 106
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.45 E-value=82 Score=26.30 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhh
Q 005052 472 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 515 (716)
Q Consensus 472 qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNa 515 (716)
.++.+..|+.+|+..|-++ ..+||+..|+|+..+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4667788999987775454 5568999999999999888765
No 107
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=25.14 E-value=1.7e+02 Score=25.25 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHH----HHHHHhCCChhhh-hhhchhhhhhh
Q 005052 461 PWRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKH----ILARQTGLSRSQV-SNWFINARVRL 519 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~----~LAkqTGLS~~QV-sNWFiNaRrRl 519 (716)
.+|.++...++.-+.|-.|+.+... -| |+...-. .|+.+.|++.-.+ .+|+.+-.+|.
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 3445556788889999999987543 34 6665543 5666677764444 47988877764
No 108
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=25.04 E-value=15 Score=34.15 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
.||+..+.+|.-.+.+ .+ .-.++|+.+|+|...|.++...+|+++|
T Consensus 198 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK----DQ----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 4888888888776655 22 4468999999999999999999998874
No 109
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.73 E-value=54 Score=31.59 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=39.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
...|+++.+++| .|+.+ .+ .-.++|+.+|+|..-|++...|+|+|+.-.
T Consensus 173 ~~~Lt~~e~~vl-~~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 173 KQMLSPREMLCL-VWASK----GK----TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GGSCCHHHHHHH-HHHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHH-HHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 446999999999 45554 33 347899999999999999999999998543
No 110
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=24.55 E-value=1.7e+02 Score=27.29 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccccCCCCCccCchhhhHHHhhhcccchhhHHH
Q 005052 341 LEFMELQKRKTKLLSMLEEVDRRYRHY---CDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG 411 (716)
Q Consensus 341 le~~elQ~kK~kLL~mLEEVd~rY~qY---~~qmq~V~sSFe~vaG~gaA~~Yt~lAl~amSrhfr~LrdaI~~ 411 (716)
-++++|+.+=.....-|.+.+.++++- ++++...+.++.. .|. ...|||.+....+.+....++.-|..
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~-~~~-~~npYT~it~~~l~~~W~~l~~li~~ 116 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI-KLS-GSNPYTTVTPQIINSKWEKVQQLVPK 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CCS-SSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCc-CCC-CCCCCccchHHHHHHHHHHHHHHHHH
Confidence 356777777777777788888887766 4777777777773 232 24599999888888887777766644
No 111
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.25 E-value=47 Score=25.77 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhchhhh
Q 005052 494 KHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaR 516 (716)
..+||+.+|+++..|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999988876
No 112
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.76 E-value=79 Score=31.00 Aligned_cols=53 Identities=21% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHH
Q 005052 466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 527 (716)
Q Consensus 466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~ 527 (716)
..||++.+.+|.-. .+ .+ .-.++|+.+|++..-|.+...++|++++.....+.
T Consensus 196 ~~L~~~erevl~L~-~~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~ 248 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEA 248 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 46999999999886 44 33 34689999999999999999999999987655444
No 113
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.55 E-value=61 Score=24.44 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHhCCChhhhhhhchhhhhhhchhhHHH
Q 005052 495 HILARQTGLSRSQVSNWFINARVRLWKPMVEE 526 (716)
Q Consensus 495 ~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee 526 (716)
.++|+..|+|+.-|.++..+.+++++.....+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 48 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTE 48 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 58999999999999999999999987654433
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.47 E-value=38 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhchhhh
Q 005052 494 KHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaR 516 (716)
..+||+.+|+++..|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 115
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.43 E-value=83 Score=26.17 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 515 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNa 515 (716)
++.++.+.+...-..+... .. .....+|+.+|+++..|.+|....
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g----~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DG----ASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GG----SCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc--CC----ChHHHHHHHHCcCHHHHHHHHHHH
Confidence 3568888765444444321 01 136789999999999999997543
No 116
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.29 E-value=1.4e+02 Score=25.21 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChhhhhhhchh
Q 005052 465 QRGLPERSVSVLRAWLFEHFLHPYPSD-VDKHILARQTGLSRSQVSNWFIN 514 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~-~EK~~LAkqTGLS~~QVsNWFiN 514 (716)
++.|+.+.+...-..+.++- .-|++. .....+|+..|+++..|.+|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 45688888654444443310 002232 35678999999999999999643
No 117
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.07 E-value=39 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhchhhh
Q 005052 494 KHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaR 516 (716)
..+||+.+|+++..|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 118
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.93 E-value=54 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052 494 KHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
..+||+.+|+++..|+.|-.+.++...
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~ 52 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPS 52 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCB
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 456888888888888888877444433
No 119
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.23 E-value=40 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHHHHhCCChhhhhhhchhhhh
Q 005052 494 KHILARQTGLSRSQVSNWFINARV 517 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaRr 517 (716)
..+||+.+|+++..|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 577999999999999999988766
No 120
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=20.50 E-value=45 Score=26.63 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhhhhhhchhhh
Q 005052 494 KHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 494 K~~LAkqTGLS~~QVsNWFiNaR 516 (716)
..+||+.+|+++..|++|..+.|
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998866
Done!