Query 005055
Match_columns 716
No_of_seqs 294 out of 1219
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 7.5E-67 1.6E-71 546.8 16.9 259 51-314 1-260 (260)
2 KOG2037 Guanylate-binding prot 100.0 1.8E-51 3.8E-56 458.9 24.4 476 42-563 5-499 (552)
3 cd01851 GBP Guanylate-binding 100.0 7.1E-46 1.5E-50 380.4 19.7 219 66-307 2-223 (224)
4 PF02841 GBP_C: Guanylate-bind 100.0 6E-38 1.3E-42 334.7 33.7 247 315-564 1-257 (297)
5 KOG2037 Guanylate-binding prot 100.0 3.9E-29 8.5E-34 279.9 25.4 380 38-430 29-444 (552)
6 PF05879 RHD3: Root hair defec 100.0 2E-26 4.4E-31 271.6 40.7 356 77-476 1-386 (742)
7 KOG2203 GTP-binding protein [G 99.9 4.1E-25 8.9E-30 240.1 32.8 273 40-368 4-305 (772)
8 PF00038 Filament: Intermediat 99.5 2.9E-10 6.3E-15 122.6 37.7 207 461-680 79-310 (312)
9 KOG4181 Uncharacterized conser 98.8 7.2E-08 1.6E-12 101.9 12.7 151 41-213 163-349 (491)
10 KOG0977 Nuclear envelope prote 98.5 6.6E-05 1.4E-09 85.3 29.4 181 501-682 187-392 (546)
11 COG1159 Era GTPase [General fu 98.3 1.1E-06 2.4E-11 92.5 6.5 58 69-139 4-65 (298)
12 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 5.2E-06 1.1E-10 83.4 9.9 62 74-143 3-64 (196)
13 cd01853 Toc34_like Toc34-like 98.1 3.6E-05 7.8E-10 80.7 13.4 65 68-141 28-92 (249)
14 PF01926 MMR_HSR1: 50S ribosom 98.1 5.8E-06 1.3E-10 75.6 6.6 59 74-141 2-60 (116)
15 PF04548 AIG1: AIG1 family; I 98.1 1E-05 2.2E-10 82.7 8.4 102 74-184 3-110 (212)
16 TIGR02169 SMC_prok_A chromosom 98.0 0.021 4.6E-07 72.1 38.9 21 72-92 24-44 (1164)
17 TIGR00993 3a0901s04IAP86 chlor 98.0 7.5E-05 1.6E-09 86.5 14.1 63 72-143 119-181 (763)
18 TIGR02169 SMC_prok_A chromosom 97.9 0.05 1.1E-06 68.8 39.6 136 556-696 363-498 (1164)
19 PF02841 GBP_C: Guanylate-bind 97.9 0.046 1E-06 58.9 33.5 117 567-692 179-295 (297)
20 PF00038 Filament: Intermediat 97.9 0.052 1.1E-06 58.6 34.4 78 503-584 60-137 (312)
21 TIGR02168 SMC_prok_B chromosom 97.9 0.068 1.5E-06 67.5 39.6 23 73-95 25-50 (1179)
22 PF00261 Tropomyosin: Tropomyo 97.8 0.0036 7.9E-08 65.2 22.1 144 508-658 75-224 (237)
23 PRK11637 AmiB activator; Provi 97.8 0.02 4.2E-07 64.9 29.6 33 663-695 222-254 (428)
24 PRK00089 era GTPase Era; Revie 97.8 7.9E-05 1.7E-09 79.6 9.5 59 70-140 4-65 (292)
25 TIGR02168 SMC_prok_B chromosom 97.8 0.022 4.7E-07 71.9 32.1 9 45-53 28-36 (1179)
26 PHA02562 46 endonuclease subun 97.8 0.015 3.2E-07 67.9 28.4 22 71-92 27-48 (562)
27 PF02421 FeoB_N: Ferrous iron 97.8 4.4E-05 9.6E-10 74.3 6.1 58 73-143 2-62 (156)
28 TIGR00606 rad50 rad50. This fa 97.7 0.14 2.9E-06 66.1 37.5 20 72-91 29-48 (1311)
29 TIGR00436 era GTP-binding prot 97.7 8.8E-05 1.9E-09 78.5 7.3 56 72-140 1-60 (270)
30 KOG0161 Myosin class II heavy 97.7 0.13 2.8E-06 67.0 36.3 182 510-692 1258-1460(1930)
31 KOG0250 DNA repair protein RAD 97.7 0.26 5.6E-06 60.1 36.5 123 551-684 338-460 (1074)
32 cd04163 Era Era subfamily. Er 97.7 0.00023 5E-09 67.4 9.4 61 72-141 4-64 (168)
33 TIGR03598 GTPase_YsxC ribosome 97.6 0.00035 7.6E-09 68.9 10.4 61 69-140 16-76 (179)
34 PF07888 CALCOCO1: Calcium bin 97.6 0.048 1E-06 62.6 28.5 36 204-241 27-62 (546)
35 KOG0161 Myosin class II heavy 97.6 0.24 5.1E-06 64.6 37.5 177 515-696 1010-1200(1930)
36 PRK04778 septation ring format 97.6 0.28 6.1E-06 57.7 35.5 43 405-448 165-207 (569)
37 cd01858 NGP_1 NGP-1. Autoanti 97.6 9.9E-05 2.2E-09 71.4 5.6 55 72-138 103-157 (157)
38 KOG0964 Structural maintenance 97.6 0.26 5.7E-06 59.2 34.1 137 556-692 334-503 (1200)
39 KOG0977 Nuclear envelope prote 97.6 0.023 4.9E-07 65.1 25.1 198 501-701 96-351 (546)
40 PRK04863 mukB cell division pr 97.5 0.12 2.6E-06 66.6 33.5 24 72-95 28-51 (1486)
41 COG1196 Smc Chromosome segrega 97.5 0.065 1.4E-06 68.1 31.0 78 613-691 824-901 (1163)
42 PF05010 TACC: Transforming ac 97.5 0.1 2.3E-06 53.1 26.3 118 547-667 48-172 (207)
43 PF12128 DUF3584: Protein of u 97.5 0.65 1.4E-05 59.4 43.0 156 548-703 598-761 (1201)
44 PHA02562 46 endonuclease subun 97.5 0.031 6.6E-07 65.3 26.1 70 510-586 180-249 (562)
45 PF00261 Tropomyosin: Tropomyo 97.5 0.067 1.5E-06 55.8 25.8 119 520-642 31-152 (237)
46 KOG0963 Transcription factor/C 97.5 0.15 3.2E-06 58.8 30.0 181 510-693 120-315 (629)
47 PRK04778 septation ring format 97.5 0.4 8.6E-06 56.4 44.0 119 567-690 306-427 (569)
48 COG1196 Smc Chromosome segrega 97.5 0.064 1.4E-06 68.2 30.0 20 73-92 26-45 (1163)
49 KOG0250 DNA repair protein RAD 97.4 0.25 5.4E-06 60.3 32.4 112 550-661 295-410 (1074)
50 PRK02224 chromosome segregatio 97.4 0.25 5.4E-06 61.0 34.1 21 72-92 24-44 (880)
51 cd01894 EngA1 EngA1 subfamily. 97.4 0.00037 8.1E-09 65.9 7.2 58 75-141 1-58 (157)
52 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.00097 2.1E-08 71.8 11.0 74 59-141 23-99 (313)
53 PF10220 DUF2146: Uncharacteri 97.4 0.24 5.2E-06 60.4 32.1 77 349-433 392-468 (895)
54 PRK11637 AmiB activator; Provi 97.4 0.18 3.9E-06 57.1 29.8 6 672-677 245-250 (428)
55 PF12718 Tropomyosin_1: Tropom 97.4 0.036 7.9E-07 53.3 20.3 50 613-662 90-139 (143)
56 TIGR00606 rad50 rad50. This fa 97.4 0.87 1.9E-05 58.9 38.5 16 549-564 798-813 (1311)
57 COG1579 Zn-ribbon protein, pos 97.3 0.1 2.2E-06 54.2 24.2 139 547-704 42-182 (239)
58 cd01849 YlqF_related_GTPase Yl 97.3 0.00034 7.3E-09 67.6 5.8 55 72-138 101-155 (155)
59 PF15619 Lebercilin: Ciliary p 97.3 0.15 3.3E-06 51.6 24.9 164 508-676 16-187 (194)
60 cd01878 HflX HflX subfamily. 97.3 0.00066 1.4E-08 68.2 8.0 59 68-139 38-100 (204)
61 cd01850 CDC_Septin CDC/Septin. 97.3 0.00038 8.2E-09 74.1 6.4 63 73-140 6-75 (276)
62 PF13851 GAS: Growth-arrest sp 97.3 0.037 8.1E-07 56.3 20.3 106 547-652 59-171 (201)
63 PF15066 CAGE1: Cancer-associa 97.3 0.15 3.2E-06 56.8 25.7 166 518-693 331-504 (527)
64 cd01897 NOG NOG1 is a nucleola 97.2 0.0013 2.8E-08 63.4 8.8 57 73-139 2-58 (168)
65 PF07888 CALCOCO1: Calcium bin 97.2 0.62 1.4E-05 53.7 31.1 33 614-646 280-312 (546)
66 KOG4674 Uncharacterized conser 97.2 1.3 2.7E-05 57.4 36.4 79 547-625 1240-1322(1822)
67 cd04101 RabL4 RabL4 (Rab-like4 97.2 0.0007 1.5E-08 65.0 6.6 60 74-138 3-62 (164)
68 cd04171 SelB SelB subfamily. 97.2 0.0013 2.8E-08 62.7 8.5 23 73-95 2-24 (164)
69 cd01898 Obg Obg subfamily. Th 97.2 0.0014 3.1E-08 63.2 8.7 54 74-139 3-59 (170)
70 PRK02224 chromosome segregatio 97.2 0.2 4.3E-06 61.9 29.5 22 668-689 406-427 (880)
71 TIGR01843 type_I_hlyD type I s 97.2 0.065 1.4E-06 59.9 23.1 127 554-684 134-263 (423)
72 KOG1423 Ras-like GTPase ERA [C 97.2 0.0006 1.3E-08 72.1 6.2 64 69-141 70-133 (379)
73 cd04178 Nucleostemin_like Nucl 97.2 0.00059 1.3E-08 67.6 5.8 55 72-138 118-172 (172)
74 TIGR00231 small_GTP small GTP- 97.2 0.00076 1.6E-08 62.8 6.2 57 74-138 4-60 (161)
75 PF13851 GAS: Growth-arrest sp 97.2 0.32 7E-06 49.5 25.6 143 545-695 29-171 (201)
76 KOG0933 Structural maintenance 97.2 0.64 1.4E-05 56.3 31.0 67 567-633 818-887 (1174)
77 PRK03918 chromosome segregatio 97.2 0.4 8.6E-06 59.2 31.5 21 72-92 24-44 (880)
78 cd00880 Era_like Era (E. coli 97.2 0.0015 3.3E-08 60.7 8.1 59 76-142 1-59 (163)
79 PF03193 DUF258: Protein of un 97.1 0.00029 6.3E-09 68.9 3.0 71 58-142 23-101 (161)
80 cd04164 trmE TrmE (MnmE, ThdF, 97.1 0.0017 3.7E-08 61.2 7.9 60 73-141 3-62 (157)
81 TIGR03007 pepcterm_ChnLen poly 97.1 0.12 2.6E-06 59.6 24.3 136 550-685 204-380 (498)
82 PRK15494 era GTPase Era; Provi 97.1 0.00091 2E-08 73.4 6.5 58 69-139 50-111 (339)
83 cd04142 RRP22 RRP22 subfamily. 97.0 0.0024 5.1E-08 64.6 8.8 59 74-140 3-61 (198)
84 PF12128 DUF3584: Protein of u 97.0 1.2 2.6E-05 57.1 34.8 19 74-92 20-38 (1201)
85 cd01890 LepA LepA subfamily. 97.0 0.0022 4.7E-08 62.6 8.3 98 74-176 3-110 (179)
86 PF06160 EzrA: Septation ring 97.0 1.1 2.4E-05 52.7 39.9 121 548-668 304-433 (560)
87 PF09726 Macoilin: Transmembra 97.0 0.051 1.1E-06 64.9 21.0 95 522-624 422-516 (697)
88 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0011 2.4E-08 63.0 5.8 55 73-139 85-139 (141)
89 PRK12298 obgE GTPase CgtA; Rev 97.0 0.001 2.2E-08 74.2 6.4 57 71-139 159-218 (390)
90 PRK09039 hypothetical protein; 97.0 0.097 2.1E-06 57.6 21.6 85 545-640 76-167 (343)
91 PRK09039 hypothetical protein; 97.0 0.32 7E-06 53.5 25.5 41 608-648 128-168 (343)
92 cd04104 p47_IIGP_like p47 (47- 97.0 0.002 4.3E-08 64.9 7.6 22 74-95 4-25 (197)
93 PF08477 Miro: Miro-like prote 97.0 0.004 8.7E-08 56.6 8.8 90 74-178 2-92 (119)
94 PRK00454 engB GTP-binding prot 97.0 0.0014 3E-08 65.0 6.3 59 70-139 23-81 (196)
95 KOG0980 Actin-binding protein 97.0 0.66 1.4E-05 55.4 28.5 124 567-701 413-542 (980)
96 KOG0946 ER-Golgi vesicle-tethe 97.0 1.4 3E-05 52.4 35.8 149 547-696 789-954 (970)
97 PF06785 UPF0242: Uncharacteri 96.9 0.054 1.2E-06 57.7 17.9 94 543-636 127-220 (401)
98 KOG0996 Structural maintenance 96.9 1.8 3.9E-05 53.5 39.0 119 526-655 441-559 (1293)
99 cd01876 YihA_EngB The YihA (En 96.9 0.0016 3.4E-08 61.9 6.0 57 74-141 2-58 (170)
100 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.9 0.12 2.7E-06 48.9 18.5 121 508-642 7-130 (132)
101 cd01887 IF2_eIF5B IF2/eIF5B (i 96.9 0.0036 7.9E-08 60.1 8.3 60 73-139 2-61 (168)
102 COG1340 Uncharacterized archae 96.9 0.82 1.8E-05 48.8 26.3 177 508-690 31-216 (294)
103 PRK12289 GTPase RsgA; Reviewed 96.9 0.0017 3.7E-08 71.5 6.7 60 73-143 174-239 (352)
104 COG1161 Predicted GTPases [Gen 96.9 0.0012 2.5E-08 72.0 5.3 57 72-141 133-190 (322)
105 COG4942 Membrane-bound metallo 96.9 1.1 2.4E-05 50.1 29.3 178 508-694 42-244 (420)
106 cd00882 Ras_like_GTPase Ras-li 96.9 0.00097 2.1E-08 61.1 3.8 57 76-140 1-57 (157)
107 PRK11058 GTPase HflX; Provisio 96.9 0.0034 7.5E-08 70.9 8.9 57 71-138 197-255 (426)
108 cd01861 Rab6 Rab6 subfamily. 96.8 0.0018 4E-08 61.8 5.8 57 74-138 3-59 (161)
109 cd01868 Rab11_like Rab11-like. 96.8 0.0018 3.9E-08 62.3 5.8 58 73-138 5-62 (165)
110 cd01855 YqeH YqeH. YqeH is an 96.8 0.0013 2.9E-08 65.6 4.9 55 73-138 129-190 (190)
111 PRK04863 mukB cell division pr 96.8 1.3 2.8E-05 57.5 32.3 29 626-654 451-479 (1486)
112 PF00350 Dynamin_N: Dynamin fa 96.8 0.00087 1.9E-08 65.0 3.5 35 74-111 1-35 (168)
113 KOG0995 Centromere-associated 96.8 1.5 3.2E-05 50.5 42.4 42 613-654 449-490 (581)
114 PRK09563 rbgA GTPase YlqF; Rev 96.8 0.0033 7.2E-08 67.3 7.7 60 70-141 120-179 (287)
115 cd04119 RJL RJL (RabJ-Like) su 96.8 0.0022 4.9E-08 61.2 5.9 58 74-139 3-60 (168)
116 cd04139 RalA_RalB RalA/RalB su 96.8 0.0035 7.6E-08 59.7 7.1 79 74-166 3-81 (164)
117 COG1084 Predicted GTPase [Gene 96.8 0.0043 9.3E-08 66.5 8.2 102 54-166 148-255 (346)
118 PRK12288 GTPase RsgA; Reviewed 96.8 0.0013 2.9E-08 72.2 4.6 58 73-141 207-270 (347)
119 KOG0612 Rho-associated, coiled 96.8 0.61 1.3E-05 57.5 26.8 39 53-91 69-108 (1317)
120 COG1160 Predicted GTPases [Gen 96.8 0.0056 1.2E-07 68.4 9.4 93 72-176 4-103 (444)
121 cd00881 GTP_translation_factor 96.7 0.0049 1.1E-07 60.2 8.0 22 74-95 2-23 (189)
122 cd01866 Rab2 Rab2 subfamily. 96.7 0.0027 5.8E-08 61.7 5.9 61 70-138 3-63 (168)
123 PF12718 Tropomyosin_1: Tropom 96.7 0.37 8E-06 46.4 20.3 113 554-682 25-137 (143)
124 COG3840 ThiQ ABC-type thiamine 96.7 0.0014 3E-08 64.9 3.8 39 73-120 27-65 (231)
125 cd01864 Rab19 Rab19 subfamily. 96.7 0.0028 6.1E-08 61.1 5.8 59 72-138 4-62 (165)
126 COG1579 Zn-ribbon protein, pos 96.7 0.69 1.5E-05 48.1 23.4 64 615-678 122-186 (239)
127 KOG0994 Extracellular matrix g 96.7 2.7 5.7E-05 51.8 38.7 159 440-604 1472-1638(1758)
128 cd01895 EngA2 EngA2 subfamily. 96.7 0.003 6.5E-08 60.4 6.0 59 73-140 4-62 (174)
129 PRK03918 chromosome segregatio 96.7 2.7 5.9E-05 51.9 36.5 31 613-643 669-699 (880)
130 cd01881 Obg_like The Obg-like 96.7 0.0033 7.1E-08 60.8 6.2 52 76-139 1-55 (176)
131 PF00009 GTP_EFTU: Elongation 96.7 0.0013 2.8E-08 65.5 3.5 101 70-180 2-117 (188)
132 cd01896 DRG The developmentall 96.7 0.0031 6.7E-08 65.5 6.3 54 73-139 2-58 (233)
133 TIGR02680 conserved hypothetic 96.7 3.5 7.6E-05 53.5 34.7 21 72-92 25-45 (1353)
134 COG3596 Predicted GTPase [Gene 96.7 0.002 4.3E-08 67.6 4.7 67 69-147 38-107 (296)
135 cd00154 Rab Rab family. Rab G 96.6 0.0032 7E-08 59.0 5.8 57 74-138 3-59 (159)
136 cd01860 Rab5_related Rab5-rela 96.6 0.0034 7.4E-08 60.0 5.9 55 74-138 4-60 (163)
137 cd04118 Rab24 Rab24 subfamily. 96.6 0.0032 6.8E-08 62.6 5.8 59 74-139 3-61 (193)
138 cd04113 Rab4 Rab4 subfamily. 96.6 0.0033 7.2E-08 60.2 5.7 58 74-139 3-60 (161)
139 TIGR02836 spore_IV_A stage IV 96.6 0.0028 6.1E-08 70.2 5.5 26 68-94 15-40 (492)
140 cd01891 TypA_BipA TypA (tyrosi 96.6 0.0067 1.4E-07 60.6 7.8 67 71-140 2-77 (194)
141 TIGR03156 GTP_HflX GTP-binding 96.6 0.0077 1.7E-07 66.4 8.9 58 69-138 187-247 (351)
142 cd04122 Rab14 Rab14 subfamily. 96.6 0.0038 8.3E-08 60.3 5.8 57 74-138 5-61 (166)
143 cd04159 Arl10_like Arl10-like 96.6 0.0032 7E-08 59.1 5.2 53 74-138 2-54 (159)
144 cd01865 Rab3 Rab3 subfamily. 96.6 0.0039 8.6E-08 60.2 5.8 58 74-139 4-61 (165)
145 smart00175 RAB Rab subfamily o 96.5 0.0043 9.4E-08 59.2 6.0 54 74-139 3-60 (164)
146 cd04112 Rab26 Rab26 subfamily. 96.5 0.0035 7.6E-08 62.5 5.5 58 74-138 3-60 (191)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.27 5.9E-06 46.6 17.9 88 557-648 3-90 (132)
148 cd04106 Rab23_lke Rab23-like s 96.5 0.0055 1.2E-07 58.6 6.5 60 74-139 3-62 (162)
149 TIGR03594 GTPase_EngA ribosome 96.5 0.0095 2.1E-07 67.1 9.4 56 73-139 1-58 (429)
150 cd04136 Rap_like Rap-like subf 96.5 0.004 8.6E-08 59.5 5.4 58 73-139 3-60 (163)
151 PRK04213 GTP-binding protein; 96.5 0.0045 9.7E-08 62.0 5.9 58 70-141 8-65 (201)
152 smart00173 RAS Ras subfamily o 96.5 0.0039 8.5E-08 59.8 5.3 57 74-139 3-59 (164)
153 KOG0978 E3 ubiquitin ligase in 96.5 2.9 6.3E-05 49.7 32.3 129 548-676 508-644 (698)
154 PF05049 IIGP: Interferon-indu 96.5 0.007 1.5E-07 66.8 7.7 94 68-176 33-132 (376)
155 cd04138 H_N_K_Ras_like H-Ras/N 96.5 0.0048 1E-07 58.6 5.6 56 74-138 4-59 (162)
156 cd04124 RabL2 RabL2 subfamily. 96.4 0.0051 1.1E-07 59.3 5.8 56 74-139 3-60 (161)
157 PRK00098 GTPase RsgA; Reviewed 96.4 0.0035 7.6E-08 67.5 5.1 23 73-95 166-188 (298)
158 cd04116 Rab9 Rab9 subfamily. 96.4 0.0054 1.2E-07 59.4 6.0 59 72-138 6-64 (170)
159 PF09726 Macoilin: Transmembra 96.4 0.42 9.1E-06 57.3 22.8 44 545-588 455-498 (697)
160 cd01856 YlqF YlqF. Proteins o 96.4 0.0055 1.2E-07 60.2 6.0 54 73-138 117-170 (171)
161 KOG0995 Centromere-associated 96.4 1.1 2.4E-05 51.4 24.6 110 548-664 278-393 (581)
162 cd04145 M_R_Ras_like M-Ras/R-R 96.4 0.0065 1.4E-07 58.1 6.3 59 72-139 3-61 (164)
163 KOG0980 Actin-binding protein 96.4 3 6.5E-05 50.1 28.7 101 553-665 441-541 (980)
164 KOG0976 Rho/Rac1-interacting s 96.4 3.2 6.9E-05 49.3 31.0 169 510-697 336-524 (1265)
165 PF10174 Cast: RIM-binding pro 96.4 3 6.5E-05 50.6 29.6 102 547-648 375-503 (775)
166 cd01867 Rab8_Rab10_Rab13_like 96.4 0.0047 1E-07 59.8 5.3 58 73-138 5-62 (167)
167 cd01862 Rab7 Rab7 subfamily. 96.4 0.0058 1.3E-07 58.9 5.8 56 74-139 3-60 (172)
168 cd00879 Sar1 Sar1 subfamily. 96.4 0.011 2.3E-07 58.5 7.8 66 59-139 8-74 (190)
169 cd01854 YjeQ_engC YjeQ/EngC. 96.4 0.0044 9.6E-08 66.4 5.4 58 72-140 162-225 (287)
170 PRK00093 GTP-binding protein D 96.4 0.015 3.3E-07 65.7 9.9 56 73-140 3-61 (435)
171 KOG0448 Mitofusin 1 GTPase, in 96.4 0.06 1.3E-06 62.7 14.5 46 129-178 207-254 (749)
172 cd04166 CysN_ATPS CysN_ATPS su 96.3 0.0073 1.6E-07 61.4 6.6 22 74-95 2-23 (208)
173 COG5019 CDC3 Septin family pro 96.3 0.0054 1.2E-07 66.7 5.8 67 70-140 23-94 (373)
174 cd04115 Rab33B_Rab33A Rab33B/R 96.3 0.0079 1.7E-07 58.5 6.5 61 71-139 2-62 (170)
175 cd04137 RheB Rheb (Ras Homolog 96.3 0.0063 1.4E-07 59.5 5.8 54 74-139 4-60 (180)
176 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.3 0.0064 1.4E-07 58.6 5.7 57 74-138 5-61 (166)
177 KOG0612 Rho-associated, coiled 96.3 1.5 3.2E-05 54.3 26.2 151 548-699 492-665 (1317)
178 KOG1029 Endocytic adaptor prot 96.3 1.5 3.3E-05 51.7 25.1 20 210-234 234-253 (1118)
179 cd04109 Rab28 Rab28 subfamily. 96.3 0.008 1.7E-07 61.2 6.5 58 74-138 3-60 (215)
180 cd00157 Rho Rho (Ras homology) 96.3 0.0074 1.6E-07 58.1 6.0 57 74-139 3-59 (171)
181 cd00876 Ras Ras family. The R 96.3 0.0067 1.5E-07 57.4 5.5 57 74-139 2-58 (160)
182 cd04123 Rab21 Rab21 subfamily. 96.3 0.0081 1.8E-07 57.0 6.1 56 74-138 3-59 (162)
183 cd04177 RSR1 RSR1 subgroup. R 96.3 0.0075 1.6E-07 58.5 5.9 58 74-140 4-61 (168)
184 KOG0971 Microtubule-associated 96.2 4.1 9E-05 49.0 31.8 31 663-693 472-502 (1243)
185 KOG4674 Uncharacterized conser 96.2 6.5 0.00014 51.3 36.8 177 520-697 138-335 (1822)
186 cd00877 Ran Ran (Ras-related n 96.2 0.0078 1.7E-07 58.6 5.9 58 74-139 3-60 (166)
187 COG1116 TauB ABC-type nitrate/ 96.2 0.0067 1.5E-07 63.0 5.6 23 73-95 31-53 (248)
188 cd01889 SelB_euk SelB subfamil 96.2 0.011 2.3E-07 59.1 6.9 64 74-138 3-78 (192)
189 PLN03118 Rab family protein; P 96.2 0.008 1.7E-07 60.9 6.1 57 74-139 17-73 (211)
190 TIGR00157 ribosome small subun 96.2 0.0049 1.1E-07 64.5 4.6 22 73-94 122-143 (245)
191 cd04155 Arl3 Arl3 subfamily. 96.2 0.016 3.4E-07 56.2 7.8 53 73-138 16-68 (173)
192 KOG0946 ER-Golgi vesicle-tethe 96.2 2.6 5.6E-05 50.2 26.5 205 502-706 648-894 (970)
193 cd04146 RERG_RasL11_like RERG/ 96.2 0.008 1.7E-07 57.9 5.7 57 74-139 2-58 (165)
194 KOG4673 Transcription factor T 96.2 2.2 4.7E-05 49.8 25.4 111 578-692 498-616 (961)
195 cd01863 Rab18 Rab18 subfamily. 96.2 0.008 1.7E-07 57.4 5.6 58 74-139 3-60 (161)
196 smart00178 SAR Sar1p-like memb 96.2 0.01 2.2E-07 58.9 6.5 54 72-139 18-72 (184)
197 TIGR03594 GTPase_EngA ribosome 96.2 0.029 6.3E-07 63.2 10.9 61 71-140 172-232 (429)
198 COG0486 ThdF Predicted GTPase 96.2 0.0079 1.7E-07 67.4 6.1 62 68-139 215-276 (454)
199 TIGR01005 eps_transp_fam exopo 96.2 1.3 2.9E-05 53.8 25.8 33 569-601 300-332 (754)
200 TIGR03596 GTPase_YlqF ribosome 96.2 0.013 2.9E-07 62.3 7.7 58 70-139 117-174 (276)
201 PRK00093 GTP-binding protein D 96.2 0.027 5.8E-07 63.7 10.5 56 71-139 173-232 (435)
202 TIGR01000 bacteriocin_acc bact 96.2 0.78 1.7E-05 52.5 22.5 32 561-592 169-200 (457)
203 cd04127 Rab27A Rab27a subfamil 96.2 0.01 2.2E-07 58.0 6.2 63 71-138 4-73 (180)
204 TIGR00450 mnmE_trmE_thdF tRNA 96.2 0.0085 1.8E-07 68.1 6.4 61 69-139 202-262 (442)
205 KOG4643 Uncharacterized coiled 96.1 4.3 9.4E-05 49.5 28.4 167 510-687 407-588 (1195)
206 cd04110 Rab35 Rab35 subfamily. 96.1 0.0084 1.8E-07 60.3 5.7 58 71-138 6-65 (199)
207 KOG0933 Structural maintenance 96.1 3.8 8.2E-05 50.0 27.9 185 515-703 681-865 (1174)
208 PRK05291 trmE tRNA modificatio 96.1 0.0083 1.8E-07 68.3 6.3 58 73-139 217-274 (449)
209 PRK03003 GTP-binding protein D 96.1 0.032 7E-07 64.0 11.1 56 71-139 211-270 (472)
210 cd01859 MJ1464 MJ1464. This f 96.1 0.02 4.4E-07 55.0 8.1 55 72-138 102-156 (156)
211 cd01870 RhoA_like RhoA-like su 96.1 0.0091 2E-07 57.9 5.7 57 74-139 4-60 (175)
212 cd04111 Rab39 Rab39 subfamily. 96.1 0.0099 2.1E-07 60.6 6.2 59 74-139 5-63 (211)
213 KOG2655 Septin family protein 96.1 0.0084 1.8E-07 65.6 5.8 65 73-140 23-91 (366)
214 cd01879 FeoB Ferrous iron tran 96.1 0.01 2.2E-07 56.2 5.8 57 76-142 1-57 (158)
215 cd04125 RabA_like RabA-like su 96.1 0.011 2.4E-07 58.6 6.2 58 74-139 3-60 (188)
216 cd01893 Miro1 Miro1 subfamily. 96.1 0.011 2.4E-07 57.2 6.1 54 74-139 3-58 (166)
217 PRK09554 feoB ferrous iron tra 96.1 0.021 4.5E-07 69.2 9.5 56 73-142 5-64 (772)
218 PRK12299 obgE GTPase CgtA; Rev 96.1 0.0094 2E-07 65.3 6.1 56 71-138 158-216 (335)
219 PF05701 WEMBL: Weak chloropla 96.1 3.3 7.2E-05 48.3 27.3 143 513-655 237-389 (522)
220 cd04135 Tc10 TC10 subfamily. 96.1 0.011 2.5E-07 57.2 6.1 59 74-141 3-61 (174)
221 cd04175 Rap1 Rap1 subgroup. T 96.1 0.022 4.8E-07 54.7 8.0 58 73-139 3-60 (164)
222 cd04107 Rab32_Rab38 Rab38/Rab3 96.0 0.012 2.7E-07 59.0 6.3 58 74-138 3-60 (201)
223 PF00735 Septin: Septin; Inte 96.0 0.0085 1.8E-07 64.1 5.3 65 74-140 7-75 (281)
224 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.0 0.013 2.9E-07 57.3 6.3 56 71-139 15-70 (174)
225 PF10473 CENP-F_leu_zip: Leuci 96.0 1 2.2E-05 43.1 18.7 29 510-538 16-44 (140)
226 PF08317 Spc7: Spc7 kinetochor 96.0 0.49 1.1E-05 51.7 19.1 43 615-657 242-288 (325)
227 PRK03003 GTP-binding protein D 96.0 0.014 3.1E-07 66.9 7.4 73 54-139 20-97 (472)
228 cd04157 Arl6 Arl6 subfamily. 96.0 0.015 3.2E-07 55.4 6.4 55 74-139 2-56 (162)
229 TIGR01843 type_I_hlyD type I s 96.0 1.5 3.2E-05 49.0 23.4 101 547-648 134-234 (423)
230 PTZ00258 GTP-binding protein; 96.0 0.0096 2.1E-07 66.3 5.7 68 69-139 19-96 (390)
231 cd04156 ARLTS1 ARLTS1 subfamil 96.0 0.015 3.3E-07 55.4 6.4 54 74-139 2-55 (160)
232 PF10174 Cast: RIM-binding pro 96.0 2.8 6E-05 50.9 26.4 30 503-532 230-259 (775)
233 smart00174 RHO Rho (Ras homolo 96.0 0.011 2.3E-07 57.4 5.3 57 74-139 1-57 (174)
234 PF04849 HAP1_N: HAP1 N-termin 96.0 3 6.5E-05 44.9 24.0 109 549-658 166-289 (306)
235 PRK01156 chromosome segregatio 95.9 5.2 0.00011 49.7 29.9 22 71-92 23-44 (895)
236 cd04140 ARHI_like ARHI subfami 95.9 0.014 3E-07 56.4 6.0 58 73-139 3-60 (165)
237 PF15070 GOLGA2L5: Putative go 95.9 3.7 7.9E-05 48.7 26.8 104 580-683 155-274 (617)
238 cd04117 Rab15 Rab15 subfamily. 95.9 0.013 2.9E-07 56.5 5.8 58 74-139 3-60 (161)
239 cd04170 EF-G_bact Elongation f 95.9 0.029 6.3E-07 59.3 8.8 21 74-94 2-22 (268)
240 cd04160 Arfrp1 Arfrp1 subfamil 95.9 0.01 2.3E-07 57.0 5.0 59 74-139 2-61 (167)
241 TIGR03017 EpsF chain length de 95.9 2 4.3E-05 48.7 24.2 42 562-603 259-300 (444)
242 PF04849 HAP1_N: HAP1 N-termin 95.9 0.57 1.2E-05 50.3 18.2 130 516-652 165-304 (306)
243 cd01884 EF_Tu EF-Tu subfamily. 95.9 0.024 5.3E-07 57.2 7.7 99 72-178 3-110 (195)
244 cd04114 Rab30 Rab30 subfamily. 95.9 0.018 3.9E-07 55.5 6.5 63 69-139 5-67 (169)
245 cd04176 Rap2 Rap2 subgroup. T 95.9 0.016 3.4E-07 55.6 6.0 57 74-139 4-60 (163)
246 cd01900 YchF YchF subfamily. 95.8 0.013 2.8E-07 62.5 5.4 63 74-139 1-73 (274)
247 TIGR02528 EutP ethanolamine ut 95.8 0.011 2.4E-07 55.4 4.5 22 74-95 3-24 (142)
248 PLN03110 Rab GTPase; Provision 95.8 0.016 3.4E-07 59.3 6.0 61 70-138 11-71 (216)
249 KOG1547 Septin CDC10 and relat 95.8 0.016 3.5E-07 59.6 5.8 65 73-140 48-116 (336)
250 PRK09518 bifunctional cytidyla 95.8 0.046 1E-06 65.9 10.8 56 71-139 450-509 (712)
251 TIGR03017 EpsF chain length de 95.8 4.3 9.3E-05 46.0 26.1 28 519-546 172-199 (444)
252 smart00787 Spc7 Spc7 kinetocho 95.7 3.7 8E-05 44.7 24.0 60 539-598 140-199 (312)
253 cd04132 Rho4_like Rho4-like su 95.7 0.019 4.2E-07 56.5 6.2 58 74-139 3-60 (187)
254 PF09789 DUF2353: Uncharacteri 95.7 0.78 1.7E-05 49.7 18.5 95 574-673 68-167 (319)
255 CHL00189 infB translation init 95.7 0.027 5.8E-07 67.6 8.3 98 70-178 243-340 (742)
256 TIGR03597 GTPase_YqeH ribosome 95.7 0.013 2.7E-07 65.0 5.3 56 73-139 156-215 (360)
257 PRK12296 obgE GTPase CgtA; Rev 95.7 0.015 3.3E-07 66.7 6.0 54 71-138 159-216 (500)
258 PF15070 GOLGA2L5: Putative go 95.7 5.5 0.00012 47.3 27.1 56 645-701 167-225 (617)
259 KOG4643 Uncharacterized coiled 95.7 7.6 0.00016 47.5 35.6 32 501-532 319-350 (1195)
260 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.024 5.1E-07 54.1 6.4 53 74-139 2-54 (158)
261 cd04154 Arl2 Arl2 subfamily. 95.7 0.016 3.5E-07 56.4 5.4 54 73-139 16-69 (173)
262 PF01576 Myosin_tail_1: Myosin 95.7 0.0029 6.2E-08 77.5 0.0 182 510-692 200-402 (859)
263 KOG4673 Transcription factor T 95.7 6.1 0.00013 46.3 36.2 101 540-640 513-635 (961)
264 cd04147 Ras_dva Ras-dva subfam 95.7 0.019 4.1E-07 57.6 5.9 55 74-139 2-58 (198)
265 PF09730 BicD: Microtubule-ass 95.7 2.4 5.3E-05 50.7 23.9 145 510-674 40-184 (717)
266 cd04148 RGK RGK subfamily. Th 95.6 0.019 4.2E-07 58.9 5.9 57 74-139 3-61 (221)
267 TIGR02729 Obg_CgtA Obg family 95.6 0.043 9.3E-07 60.0 8.8 57 71-139 157-216 (329)
268 KOG0996 Structural maintenance 95.6 8.9 0.00019 47.7 43.9 79 608-687 498-583 (1293)
269 COG1136 SalX ABC-type antimicr 95.6 0.012 2.6E-07 60.7 4.2 23 73-95 33-55 (226)
270 PRK12297 obgE GTPase CgtA; Rev 95.6 0.034 7.3E-07 62.8 8.1 56 71-139 158-217 (424)
271 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.6 0.021 4.6E-07 55.9 5.8 57 74-139 5-61 (172)
272 cd01899 Ygr210 Ygr210 subfamil 95.6 0.021 4.6E-07 62.1 6.2 62 74-138 1-79 (318)
273 PF05010 TACC: Transforming ac 95.6 3.2 7E-05 42.4 26.8 45 615-659 159-203 (207)
274 PRK13796 GTPase YqeH; Provisio 95.6 0.017 3.7E-07 64.1 5.6 55 73-139 162-221 (365)
275 cd01886 EF-G Elongation factor 95.5 0.036 7.7E-07 59.0 7.6 92 74-173 2-104 (270)
276 PTZ00132 GTP-binding nuclear p 95.5 0.021 4.6E-07 58.0 5.6 60 72-139 10-69 (215)
277 cd04167 Snu114p Snu114p subfam 95.5 0.045 9.7E-07 55.7 8.0 22 74-95 3-24 (213)
278 cd04108 Rab36_Rab34 Rab34/Rab3 95.5 0.026 5.6E-07 55.2 6.0 58 74-139 3-60 (170)
279 COG4942 Membrane-bound metallo 95.5 5.6 0.00012 44.7 27.3 89 556-648 160-248 (420)
280 PF05701 WEMBL: Weak chloropla 95.5 7 0.00015 45.6 28.4 118 569-690 114-234 (522)
281 PRK09601 GTP-binding protein Y 95.4 0.03 6.5E-07 61.8 6.8 64 73-139 4-77 (364)
282 CHL00071 tufA elongation facto 95.4 0.054 1.2E-06 61.0 9.0 104 68-179 9-121 (409)
283 cd01885 EF2 EF2 (for archaea a 95.4 0.045 9.7E-07 56.5 7.7 94 74-172 3-112 (222)
284 KOG1003 Actin filament-coating 95.4 3.4 7.3E-05 41.5 21.5 150 510-670 45-200 (205)
285 cd04144 Ras2 Ras2 subfamily. 95.4 0.02 4.3E-07 57.0 4.8 56 74-138 2-57 (190)
286 cd04169 RF3 RF3 subfamily. Pe 95.3 0.063 1.4E-06 57.0 8.7 23 72-94 3-25 (267)
287 COG1162 Predicted GTPases [Gen 95.3 0.017 3.6E-07 61.9 4.3 57 73-141 166-229 (301)
288 PF14662 CCDC155: Coiled-coil 95.3 3.5 7.6E-05 41.4 23.4 58 546-603 63-120 (193)
289 PLN03108 Rab family protein; P 95.3 0.026 5.6E-07 57.4 5.5 58 74-139 9-66 (210)
290 cd02019 NK Nucleoside/nucleoti 95.3 0.019 4.2E-07 47.9 3.7 58 73-135 1-63 (69)
291 cd04143 Rhes_like Rhes_like su 95.3 0.064 1.4E-06 56.2 8.5 57 74-139 3-59 (247)
292 cd04162 Arl9_Arfrp2_like Arl9/ 95.3 0.027 5.9E-07 54.7 5.3 54 74-139 2-55 (164)
293 PF10473 CENP-F_leu_zip: Leuci 95.3 1.9 4.2E-05 41.3 17.6 76 520-599 12-87 (140)
294 PRK09602 translation-associate 95.2 0.032 6.9E-07 62.6 6.4 64 73-138 3-82 (396)
295 cd04152 Arl4_Arl7 Arl4/Arl7 su 95.2 0.04 8.7E-07 54.5 6.4 58 70-138 3-62 (183)
296 KOG1191 Mitochondrial GTPase [ 95.2 0.024 5.3E-07 63.7 5.2 61 69-139 267-327 (531)
297 TIGR03007 pepcterm_ChnLen poly 95.2 4.6 9.9E-05 46.6 24.1 104 561-664 251-367 (498)
298 cd01882 BMS1 Bms1. Bms1 is an 95.2 0.031 6.8E-07 57.6 5.7 55 69-137 37-92 (225)
299 KOG0018 Structural maintenance 95.2 3.5 7.5E-05 50.6 23.0 171 506-686 678-896 (1141)
300 cd04158 ARD1 ARD1 subfamily. 95.2 0.036 7.8E-07 53.9 5.8 53 74-139 2-54 (169)
301 PF00071 Ras: Ras family; Int 95.2 0.025 5.3E-07 54.1 4.6 58 74-139 2-59 (162)
302 PRK04004 translation initiatio 95.1 0.069 1.5E-06 62.9 9.0 23 73-95 8-30 (586)
303 KOG1003 Actin filament-coating 95.1 4.1 8.9E-05 40.9 22.0 84 561-648 43-126 (205)
304 TIGR01005 eps_transp_fam exopo 95.1 2.5 5.4E-05 51.4 22.7 27 520-546 196-222 (754)
305 PRK09435 membrane ATPase/prote 95.1 0.017 3.7E-07 63.1 3.6 51 40-93 25-78 (332)
306 cd04168 TetM_like Tet(M)-like 95.1 0.065 1.4E-06 55.8 7.7 90 74-171 2-102 (237)
307 cd04149 Arf6 Arf6 subfamily. 95.1 0.047 1E-06 53.3 6.3 54 73-139 11-64 (168)
308 TIGR01393 lepA GTP-binding pro 95.1 0.065 1.4E-06 63.2 8.6 102 71-177 3-114 (595)
309 TIGR03185 DNA_S_dndD DNA sulfu 95.1 11 0.00023 45.3 30.2 48 550-597 421-468 (650)
310 PTZ00369 Ras-like protein; Pro 95.1 0.041 8.8E-07 54.7 5.9 57 74-139 8-64 (189)
311 TIGR01425 SRP54_euk signal rec 95.0 0.02 4.3E-07 64.6 4.0 24 69-92 98-121 (429)
312 cd04131 Rnd Rnd subfamily. Th 95.0 0.043 9.3E-07 54.3 6.0 56 74-139 4-60 (178)
313 PRK10698 phage shock protein P 95.0 3.7 7.9E-05 42.5 20.3 82 585-666 59-148 (222)
314 cd04161 Arl2l1_Arl13_like Arl2 95.0 0.038 8.3E-07 53.8 5.5 52 74-138 2-53 (167)
315 PF08317 Spc7: Spc7 kinetochor 95.0 6.6 0.00014 42.9 23.4 122 542-678 148-269 (325)
316 KOG2485 Conserved ATP/GTP bind 95.0 0.04 8.6E-07 58.9 5.7 78 73-161 145-229 (335)
317 TIGR00491 aIF-2 translation in 95.0 0.075 1.6E-06 62.5 8.6 24 72-95 5-28 (590)
318 cd04151 Arl1 Arl1 subfamily. 94.9 0.057 1.2E-06 51.6 6.4 53 74-139 2-54 (158)
319 PRK09518 bifunctional cytidyla 94.9 0.042 9.2E-07 66.2 6.5 27 69-95 273-299 (712)
320 COG1160 Predicted GTPases [Gen 94.9 0.11 2.4E-06 58.3 9.2 100 71-182 178-286 (444)
321 PF06705 SF-assemblin: SF-asse 94.9 5.9 0.00013 41.5 28.1 106 502-607 18-129 (247)
322 cd04134 Rho3 Rho3 subfamily. 94.9 0.046 9.9E-07 54.4 5.7 57 74-139 3-59 (189)
323 PRK10218 GTP-binding protein; 94.9 0.11 2.4E-06 61.4 9.7 93 70-170 4-105 (607)
324 PF09744 Jnk-SapK_ap_N: JNK_SA 94.8 3.4 7.3E-05 40.5 18.3 65 556-620 88-152 (158)
325 KOG4809 Rab6 GTPase-interactin 94.8 5.5 0.00012 45.6 22.0 142 524-692 312-453 (654)
326 cd01888 eIF2_gamma eIF2-gamma 94.8 0.097 2.1E-06 52.9 7.9 22 73-94 2-23 (203)
327 cd01892 Miro2 Miro2 subfamily. 94.8 0.063 1.4E-06 52.4 6.3 64 69-139 2-65 (169)
328 COG3883 Uncharacterized protei 94.8 6.6 0.00014 41.5 22.1 76 510-592 37-112 (265)
329 cd04128 Spg1 Spg1p. Spg1p (se 94.8 0.055 1.2E-06 53.7 5.9 58 74-139 3-60 (182)
330 cd04129 Rho2 Rho2 subfamily. 94.8 0.063 1.4E-06 53.3 6.4 59 73-140 3-61 (187)
331 PF00025 Arf: ADP-ribosylation 94.8 0.15 3.2E-06 50.3 9.0 63 63-138 4-68 (175)
332 PRK12736 elongation factor Tu; 94.7 0.077 1.7E-06 59.5 7.7 104 69-180 10-122 (394)
333 cd01130 VirB11-like_ATPase Typ 94.7 0.06 1.3E-06 53.8 6.2 40 56-95 10-49 (186)
334 PF01576 Myosin_tail_1: Myosin 94.7 0.0084 1.8E-07 73.5 0.0 138 547-684 184-345 (859)
335 PLN03071 GTP-binding nuclear p 94.7 0.052 1.1E-06 55.6 5.8 63 70-140 12-74 (219)
336 PF04012 PspA_IM30: PspA/IM30 94.7 5.8 0.00013 40.6 21.4 33 548-580 35-67 (221)
337 PRK12735 elongation factor Tu; 94.7 0.09 2E-06 59.0 8.2 26 69-94 10-35 (396)
338 KOG1853 LIS1-interacting prote 94.7 6.3 0.00014 41.0 22.0 72 567-642 87-158 (333)
339 cd04130 Wrch_1 Wrch-1 subfamil 94.7 0.055 1.2E-06 52.7 5.7 57 74-139 3-59 (173)
340 cd01874 Cdc42 Cdc42 subfamily. 94.7 0.063 1.4E-06 52.8 6.1 57 74-139 4-60 (175)
341 cd04105 SR_beta Signal recogni 94.7 0.062 1.3E-06 54.5 6.2 57 74-139 3-59 (203)
342 KOG0978 E3 ubiquitin ligase in 94.7 13 0.00028 44.4 30.5 207 503-710 407-621 (698)
343 cd01871 Rac1_like Rac1-like su 94.7 0.062 1.4E-06 52.8 6.0 57 74-139 4-60 (174)
344 KOG0410 Predicted GTP binding 94.6 0.029 6.3E-07 60.1 3.7 57 68-138 175-236 (410)
345 PTZ00133 ADP-ribosylation fact 94.6 0.049 1.1E-06 54.0 5.0 53 74-139 20-72 (182)
346 PF09787 Golgin_A5: Golgin sub 94.6 3.4 7.3E-05 48.1 20.8 85 562-646 205-303 (511)
347 KOG0976 Rho/Rac1-interacting s 94.5 14 0.0003 44.2 36.7 42 357-398 123-167 (1265)
348 smart00787 Spc7 Spc7 kinetocho 94.5 3.5 7.5E-05 44.9 19.4 86 550-639 172-261 (312)
349 cd04120 Rab12 Rab12 subfamily. 94.5 0.067 1.4E-06 54.3 5.9 58 74-139 3-60 (202)
350 PRK05433 GTP-binding protein L 94.5 0.11 2.4E-06 61.4 8.4 103 71-178 7-119 (600)
351 PF10168 Nup88: Nuclear pore c 94.4 3.7 8.1E-05 49.6 21.1 81 548-628 584-664 (717)
352 cd04102 RabL3 RabL3 (Rab-like3 94.4 0.087 1.9E-06 53.6 6.5 61 74-139 3-65 (202)
353 COG4136 ABC-type uncharacteriz 94.4 0.056 1.2E-06 52.3 4.6 40 72-118 29-69 (213)
354 PF13207 AAA_17: AAA domain; P 94.4 0.029 6.3E-07 51.3 2.7 22 73-94 1-22 (121)
355 cd03296 ABC_CysA_sulfate_impor 94.3 0.068 1.5E-06 55.3 5.6 24 72-95 29-52 (239)
356 COG2262 HflX GTPases [General 94.3 0.059 1.3E-06 59.6 5.3 56 69-138 190-250 (411)
357 cd03268 ABC_BcrA_bacitracin_re 94.2 0.05 1.1E-06 55.0 4.3 24 72-95 27-50 (208)
358 PF05911 DUF869: Plant protein 94.2 18 0.00038 44.1 26.8 91 559-653 633-723 (769)
359 cd00071 GMPK Guanosine monopho 94.2 0.036 7.8E-07 52.7 3.1 22 73-94 1-22 (137)
360 PLN03126 Elongation factor Tu; 94.2 0.15 3.2E-06 58.7 8.6 104 67-178 77-189 (478)
361 PF05667 DUF812: Protein of un 94.2 3.9 8.4E-05 48.3 20.2 31 617-647 394-424 (594)
362 PF12325 TMF_TATA_bd: TATA ele 94.2 2.4 5.1E-05 39.7 14.9 98 559-657 18-115 (120)
363 cd03301 ABC_MalK_N The N-termi 94.2 0.074 1.6E-06 53.9 5.5 23 73-95 28-50 (213)
364 COG3842 PotA ABC-type spermidi 94.2 0.054 1.2E-06 59.5 4.7 51 72-132 32-83 (352)
365 PRK05506 bifunctional sulfate 94.2 0.07 1.5E-06 63.5 6.0 26 69-95 23-48 (632)
366 TIGR00475 selB selenocysteine- 94.2 0.13 2.9E-06 60.5 8.3 23 73-95 2-24 (581)
367 PF09730 BicD: Microtubule-ass 94.2 15 0.00033 44.2 25.0 81 568-648 356-436 (717)
368 PF09728 Taxilin: Myosin-like 94.1 10 0.00023 41.2 27.5 189 500-689 60-259 (309)
369 TIGR02680 conserved hypothetic 94.1 20 0.00044 46.7 28.3 29 579-607 845-873 (1353)
370 TIGR03522 GldA_ABC_ATP gliding 94.1 0.047 1E-06 58.8 4.1 36 73-118 30-66 (301)
371 TIGR01010 BexC_CtrB_KpsE polys 94.1 3.6 7.8E-05 45.5 19.1 28 519-546 171-198 (362)
372 PLN02318 phosphoribulokinase/u 94.1 0.053 1.2E-06 63.1 4.6 43 52-94 46-88 (656)
373 TIGR00484 EF-G translation elo 94.1 0.21 4.6E-06 60.1 9.9 26 69-94 8-33 (689)
374 cd04121 Rab40 Rab40 subfamily. 94.1 0.098 2.1E-06 52.5 6.0 59 73-139 8-66 (189)
375 KOG0999 Microtubule-associated 94.1 11 0.00023 43.4 22.0 133 565-707 44-187 (772)
376 COG1100 GTPase SAR1 and relate 94.0 0.092 2E-06 53.0 5.8 62 72-141 6-67 (219)
377 PF00005 ABC_tran: ABC transpo 94.0 0.038 8.3E-07 51.6 2.8 23 73-95 13-35 (137)
378 PRK12317 elongation factor 1-a 94.0 0.2 4.4E-06 56.6 9.2 27 69-95 4-30 (425)
379 PRK10361 DNA recombination pro 94.0 14 0.00031 42.3 24.3 28 660-687 165-192 (475)
380 PRK14250 phosphate ABC transpo 94.0 0.053 1.1E-06 56.3 4.0 23 73-95 31-53 (241)
381 smart00177 ARF ARF-like small 93.8 0.097 2.1E-06 51.3 5.4 55 72-139 14-68 (175)
382 cd04150 Arf1_5_like Arf1-Arf5- 93.8 0.095 2E-06 50.5 5.2 53 74-139 3-55 (159)
383 PRK01156 chromosome segregatio 93.8 24 0.00051 44.0 39.0 129 519-648 581-719 (895)
384 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.8 0.1 2.2E-06 53.8 5.6 57 74-139 4-60 (222)
385 TIGR00235 udk uridine kinase. 93.7 0.051 1.1E-06 55.1 3.3 28 68-95 3-30 (207)
386 PF09304 Cortex-I_coil: Cortex 93.7 4.1 8.9E-05 37.0 14.8 84 546-636 19-105 (107)
387 KOG1853 LIS1-interacting prote 93.7 10 0.00022 39.5 21.2 126 558-691 53-181 (333)
388 PRK00300 gmk guanylate kinase; 93.6 0.057 1.2E-06 54.3 3.4 27 70-96 4-30 (205)
389 PF09304 Cortex-I_coil: Cortex 93.6 2.7 5.8E-05 38.2 13.4 76 566-652 4-79 (107)
390 KOG0963 Transcription factor/C 93.6 19 0.00041 42.2 34.7 145 513-658 191-350 (629)
391 PRK05306 infB translation init 93.5 0.27 5.9E-06 59.7 9.4 93 71-178 290-382 (787)
392 PF09789 DUF2353: Uncharacteri 93.5 14 0.00029 40.4 24.8 47 558-604 127-173 (319)
393 PRK00049 elongation factor Tu; 93.5 0.19 4.2E-06 56.4 7.7 26 69-94 10-35 (396)
394 PF05911 DUF869: Plant protein 93.5 16 0.00035 44.4 24.0 126 523-648 22-165 (769)
395 PF14073 Cep57_CLD: Centrosome 93.5 8.8 0.00019 38.2 21.3 42 559-600 59-100 (178)
396 PRK12727 flagellar biosynthesi 93.5 0.054 1.2E-06 62.4 3.2 22 72-93 351-372 (559)
397 PRK05124 cysN sulfate adenylyl 93.5 0.3 6.5E-06 56.2 9.3 28 68-95 24-51 (474)
398 TIGR03185 DNA_S_dndD DNA sulfu 93.4 22 0.00048 42.6 30.6 22 71-92 28-49 (650)
399 PRK13638 cbiO cobalt transport 93.4 0.074 1.6E-06 56.3 4.0 23 73-95 29-51 (271)
400 cd04126 Rab20 Rab20 subfamily. 93.4 0.13 2.9E-06 52.9 5.7 53 74-139 3-55 (220)
401 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 93.4 0.14 3E-06 53.3 5.9 58 73-139 15-72 (232)
402 TIGR01288 nodI ATP-binding ABC 93.4 0.078 1.7E-06 57.1 4.1 24 72-95 31-54 (303)
403 cd04103 Centaurin_gamma Centau 93.3 0.14 3.1E-06 49.5 5.6 56 74-139 3-58 (158)
404 COG1163 DRG Predicted GTPase [ 93.3 0.13 2.8E-06 55.4 5.6 57 71-138 63-120 (365)
405 cd03261 ABC_Org_Solvent_Resist 93.3 0.059 1.3E-06 55.6 3.0 23 73-95 28-50 (235)
406 PF06160 EzrA: Septation ring 93.3 21 0.00046 42.0 40.1 36 318-353 53-90 (560)
407 KOG1899 LAR transmembrane tyro 93.3 7.2 0.00016 45.3 19.3 169 478-653 79-260 (861)
408 PF15066 CAGE1: Cancer-associa 93.3 18 0.00038 41.0 25.8 19 430-450 331-349 (527)
409 PF05667 DUF812: Protein of un 93.2 22 0.00048 42.1 26.5 37 565-601 395-431 (594)
410 TIGR00487 IF-2 translation ini 93.2 0.31 6.8E-06 57.4 9.1 60 72-140 88-147 (587)
411 TIGR00485 EF-Tu translation el 93.2 0.25 5.4E-06 55.3 8.0 104 69-180 10-122 (394)
412 PRK10512 selenocysteinyl-tRNA- 93.2 0.28 6E-06 58.2 8.7 23 73-95 2-24 (614)
413 PF04728 LPP: Lipoprotein leuc 93.2 0.67 1.4E-05 37.3 8.0 52 612-674 5-56 (56)
414 PF09744 Jnk-SapK_ap_N: JNK_SA 93.2 4.8 0.0001 39.5 15.7 97 513-609 52-148 (158)
415 COG1134 TagH ABC-type polysacc 93.2 0.074 1.6E-06 55.2 3.3 23 73-95 55-77 (249)
416 COG0218 Predicted GTPase [Gene 93.1 0.18 3.9E-06 50.9 6.0 59 70-139 23-81 (200)
417 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 93.1 0.17 3.6E-06 50.4 5.8 58 73-139 7-64 (182)
418 TIGR01394 TypA_BipA GTP-bindin 93.1 0.19 4.2E-06 59.3 7.2 65 73-140 3-76 (594)
419 COG1126 GlnQ ABC-type polar am 93.1 0.07 1.5E-06 54.6 3.0 32 63-94 17-51 (240)
420 TIGR00503 prfC peptide chain r 93.1 0.27 5.8E-06 57.3 8.1 96 69-172 9-119 (527)
421 PF04111 APG6: Autophagy prote 93.1 1.4 3.1E-05 47.9 13.3 52 549-600 42-93 (314)
422 COG1120 FepC ABC-type cobalami 93.0 0.068 1.5E-06 56.3 2.9 24 72-95 29-52 (258)
423 TIGR00960 3a0501s02 Type II (G 93.0 0.07 1.5E-06 54.2 3.0 24 72-95 30-53 (216)
424 PLN03127 Elongation factor Tu; 93.0 0.43 9.3E-06 54.5 9.6 27 68-94 58-84 (447)
425 TIGR01166 cbiO cobalt transpor 93.0 0.072 1.6E-06 53.1 3.0 23 73-95 20-42 (190)
426 cd03225 ABC_cobalt_CbiO_domain 93.0 0.072 1.6E-06 53.9 3.0 24 72-95 28-51 (211)
427 KOG0962 DNA repair protein RAD 93.0 35 0.00075 43.5 31.0 121 551-676 796-926 (1294)
428 PRK10418 nikD nickel transport 92.9 0.15 3.3E-06 53.4 5.3 24 72-95 30-53 (254)
429 PF13870 DUF4201: Domain of un 92.9 11 0.00023 37.5 23.0 29 510-538 5-33 (177)
430 cd07651 F-BAR_PombeCdc15_like 92.9 13 0.00029 38.5 22.3 182 441-632 7-204 (236)
431 COG3172 NadR Predicted ATPase/ 92.9 0.068 1.5E-06 52.1 2.4 24 71-94 8-31 (187)
432 cd03222 ABC_RNaseL_inhibitor T 92.8 0.074 1.6E-06 53.0 2.7 23 73-95 27-49 (177)
433 PRK13351 elongation factor G; 92.8 0.25 5.4E-06 59.4 7.8 25 70-94 7-31 (687)
434 cd03265 ABC_DrrA DrrA is the A 92.8 0.078 1.7E-06 54.1 3.0 24 72-95 27-50 (220)
435 cd03226 ABC_cobalt_CbiO_domain 92.8 0.078 1.7E-06 53.5 3.0 23 73-95 28-50 (205)
436 cd03263 ABC_subfamily_A The AB 92.8 0.078 1.7E-06 54.0 3.0 23 73-95 30-52 (220)
437 PRK01889 GTPase RsgA; Reviewed 92.8 0.061 1.3E-06 59.5 2.4 24 72-95 196-219 (356)
438 cd02023 UMPK Uridine monophosp 92.8 0.057 1.2E-06 54.2 2.0 23 73-95 1-23 (198)
439 COG5185 HEC1 Protein involved 92.8 20 0.00044 40.5 23.6 214 476-694 185-413 (622)
440 KOG0239 Kinesin (KAR3 subfamil 92.8 10 0.00022 45.5 20.9 69 619-696 243-311 (670)
441 KOG1029 Endocytic adaptor prot 92.8 27 0.00058 41.9 30.1 38 665-702 554-591 (1118)
442 cd03269 ABC_putative_ATPase Th 92.8 0.08 1.7E-06 53.6 3.0 24 72-95 27-50 (210)
443 cd03224 ABC_TM1139_LivF_branch 92.8 0.079 1.7E-06 54.0 3.0 24 72-95 27-50 (222)
444 PF10481 CENP-F_N: Cenp-F N-te 92.8 3 6.4E-05 43.8 14.2 65 520-588 20-84 (307)
445 KOG0086 GTPase Rab4, small G p 92.8 0.15 3.2E-06 49.1 4.5 59 73-139 11-69 (214)
446 TIGR02977 phageshock_pspA phag 92.7 14 0.0003 38.1 20.5 15 593-607 89-103 (219)
447 cd03264 ABC_drug_resistance_li 92.7 0.077 1.7E-06 53.7 2.7 23 73-95 27-49 (211)
448 TIGR02211 LolD_lipo_ex lipopro 92.7 0.084 1.8E-06 53.8 3.0 24 72-95 32-55 (221)
449 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.7 0.085 1.8E-06 53.7 3.0 23 73-95 32-54 (218)
450 TIGR02673 FtsE cell division A 92.6 0.086 1.9E-06 53.5 3.0 23 73-95 30-52 (214)
451 cd03292 ABC_FtsE_transporter F 92.6 0.087 1.9E-06 53.4 3.0 23 73-95 29-51 (214)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.6 0.09 2E-06 50.3 3.0 24 72-95 27-50 (144)
453 TIGR02315 ABC_phnC phosphonate 92.6 0.085 1.9E-06 54.6 3.0 24 72-95 29-52 (243)
454 TIGR03263 guanyl_kin guanylate 92.6 0.11 2.4E-06 51.0 3.7 26 73-98 3-28 (180)
455 COG3839 MalK ABC-type sugar tr 92.6 0.17 3.6E-06 55.5 5.2 23 73-95 31-53 (338)
456 cd03260 ABC_PstB_phosphate_tra 92.6 0.084 1.8E-06 54.1 2.9 24 72-95 27-50 (227)
457 PRK14241 phosphate transporter 92.6 0.085 1.8E-06 55.3 2.9 24 72-95 31-54 (258)
458 cd03235 ABC_Metallic_Cations A 92.6 0.087 1.9E-06 53.4 2.9 23 73-95 27-49 (213)
459 KOG0804 Cytoplasmic Zn-finger 92.6 5.4 0.00012 44.7 16.6 20 95-114 40-59 (493)
460 PF14992 TMCO5: TMCO5 family 92.6 2.6 5.7E-05 44.7 13.8 92 593-686 85-186 (280)
461 PLN00223 ADP-ribosylation fact 92.5 0.19 4.2E-06 49.7 5.3 53 73-138 19-71 (181)
462 PF13521 AAA_28: AAA domain; P 92.5 0.049 1.1E-06 52.9 1.0 25 74-100 2-26 (163)
463 PRK15178 Vi polysaccharide exp 92.5 8.5 0.00018 43.7 18.7 125 520-651 244-385 (434)
464 COG0396 sufC Cysteine desulfur 92.5 0.1 2.3E-06 53.7 3.4 35 61-95 17-54 (251)
465 cd03216 ABC_Carb_Monos_I This 92.5 0.095 2.1E-06 51.1 3.0 24 72-95 27-50 (163)
466 PF00485 PRK: Phosphoribulokin 92.5 0.084 1.8E-06 53.0 2.7 21 73-93 1-21 (194)
467 cd01875 RhoG RhoG subfamily. 92.5 0.23 5.1E-06 49.5 5.9 57 74-139 6-62 (191)
468 COG4372 Uncharacterized protei 92.5 20 0.00043 39.6 29.1 23 626-648 212-234 (499)
469 cd03257 ABC_NikE_OppD_transpor 92.5 0.092 2E-06 53.7 3.0 23 73-95 33-55 (228)
470 cd03262 ABC_HisP_GlnQ_permease 92.5 0.094 2E-06 53.1 3.0 24 72-95 27-50 (213)
471 cd02025 PanK Pantothenate kina 92.5 0.065 1.4E-06 55.2 1.9 23 73-95 1-23 (220)
472 KOG0249 LAR-interacting protei 92.4 8.9 0.00019 45.3 18.7 182 499-696 37-252 (916)
473 cd03254 ABCC_Glucan_exporter_l 92.4 0.093 2E-06 53.8 3.0 23 73-95 31-53 (229)
474 cd03258 ABC_MetN_methionine_tr 92.4 0.094 2E-06 54.0 3.0 23 73-95 33-55 (233)
475 cd03297 ABC_ModC_molybdenum_tr 92.4 0.1 2.2E-06 53.0 3.2 26 69-95 22-47 (214)
476 TIGR03608 L_ocin_972_ABC putat 92.4 0.096 2.1E-06 52.7 3.0 23 73-95 26-48 (206)
477 COG1341 Predicted GTPase or GT 92.4 0.41 8.9E-06 53.1 8.0 111 68-179 70-193 (398)
478 cd03238 ABC_UvrA The excision 92.4 0.093 2E-06 52.2 2.8 21 73-93 23-43 (176)
479 cd03256 ABC_PhnC_transporter A 92.4 0.095 2.1E-06 54.1 3.0 23 73-95 29-51 (241)
480 PF14073 Cep57_CLD: Centrosome 92.4 13 0.00028 37.1 19.2 92 515-606 8-99 (178)
481 cd03259 ABC_Carb_Solutes_like 92.4 0.097 2.1E-06 53.1 3.0 23 73-95 28-50 (213)
482 PF04156 IncA: IncA protein; 92.4 7.8 0.00017 38.7 16.7 111 542-667 80-190 (191)
483 PRK11124 artP arginine transpo 92.4 0.096 2.1E-06 54.3 3.0 24 72-95 29-52 (242)
484 PRK11629 lolD lipoprotein tran 92.4 0.096 2.1E-06 54.0 3.0 23 73-95 37-59 (233)
485 PRK09452 potA putrescine/sperm 92.4 0.16 3.4E-06 56.7 4.8 23 73-95 42-64 (375)
486 cd03293 ABC_NrtD_SsuB_transpor 92.3 0.099 2.1E-06 53.3 3.0 24 72-95 31-54 (220)
487 PRK09270 nucleoside triphospha 92.3 0.13 2.9E-06 53.0 4.0 28 68-95 30-57 (229)
488 cd03369 ABCC_NFT1 Domain 2 of 92.3 0.099 2.1E-06 52.8 2.9 23 73-95 36-58 (207)
489 PRK11248 tauB taurine transpor 92.3 0.098 2.1E-06 54.9 3.0 24 72-95 28-51 (255)
490 TIGR01189 ccmA heme ABC export 92.3 0.1 2.2E-06 52.4 3.0 26 70-95 25-50 (198)
491 cd03219 ABC_Mj1267_LivG_branch 92.3 0.098 2.1E-06 53.9 2.9 24 72-95 27-50 (236)
492 cd03218 ABC_YhbG The ABC trans 92.3 0.1 2.2E-06 53.6 3.0 24 72-95 27-50 (232)
493 PF13555 AAA_29: P-loop contai 92.3 0.12 2.6E-06 42.5 2.8 20 73-92 25-44 (62)
494 PRK13537 nodulation ABC transp 92.3 0.14 3E-06 55.4 4.1 24 72-95 34-57 (306)
495 TIGR02770 nickel_nikD nickel i 92.2 0.1 2.2E-06 53.8 2.9 23 73-95 14-36 (230)
496 PRK10584 putative ABC transpor 92.2 0.1 2.2E-06 53.5 3.0 24 72-95 37-60 (228)
497 TIGR01978 sufC FeS assembly AT 92.2 0.1 2.3E-06 53.9 3.0 22 73-94 28-49 (243)
498 cd07648 F-BAR_FCHO The F-BAR ( 92.2 17 0.00038 38.2 27.3 85 584-679 149-234 (261)
499 PRK13541 cytochrome c biogenes 92.2 0.11 2.3E-06 52.2 3.0 23 73-95 28-50 (195)
500 PF04156 IncA: IncA protein; 92.2 8.3 0.00018 38.5 16.6 111 567-678 77-190 (191)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=7.5e-67 Score=546.81 Aligned_cols=259 Identities=47% Similarity=0.868 Sum_probs=228.5
Q ss_pred CCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeE
Q 005055 51 KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL 130 (716)
Q Consensus 51 ~~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 130 (716)
+++|.||++|+++|..+++||+||||+|+||||||||||+|+|...||+||++++|||+|||||+.|. +.+++++|
T Consensus 1 ~~~~~~~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~----~~~~~~~v 76 (260)
T PF02263_consen 1 DNKLELNEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPL----PDGEKVAV 76 (260)
T ss_dssp TTEEEE-HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-----TTSTCEEE
T ss_pred CCeEEECHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeeccc----ccccceeE
Confidence 47899999999999999999999999999999999999999999999999999999999999999994 45778999
Q ss_pred EEEeCCCCcccc-cCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeE
Q 005055 131 LLLDSEGIDAYD-QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIF 209 (716)
Q Consensus 131 vlLDTEGl~~~~-~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f 209 (716)
|||||||++++. .+.++|++||+|++||||++|||++|.|++++|++|+++++++++|+++... .....++..+||+|
T Consensus 77 ~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l 155 (260)
T PF02263_consen 77 VLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSL 155 (260)
T ss_dssp EEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEE
T ss_pred EEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHH
Confidence 999999998854 4567899999999999999999999999999999999999999999876321 11233466789999
Q ss_pred EEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhHHHHHHHhhCCCCeEEeecCCCCChhhhhcccCCCCCC
Q 005055 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDR 289 (716)
Q Consensus 210 ~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~ 289 (716)
+||||||++++..+|+.+|+++||+++|+...|.++.+..+|.+|++|++|||+++||+||||+.++..++++++++.++
T Consensus 156 ~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~ 235 (260)
T PF02263_consen 156 VWLVRDFSLELEDDGGKITPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDD 235 (260)
T ss_dssp EEEEECE-SCTCCTTECHHHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGG
T ss_pred HHHHhhccchhhhccCCCCHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhh
Confidence 99999999998888999999999999999888888888899999999999999999999999999999889999999999
Q ss_pred CChHHHHHHHHHHHHHhccCCcccc
Q 005055 290 LRPEFRAGLDALTKFVFERTRPKQV 314 (716)
Q Consensus 290 L~~eF~~~l~~l~~~i~~~~~pK~~ 314 (716)
|+|+|+++++.||++|++...+|++
T Consensus 236 L~~eF~~~l~~l~~~i~~~~~~k~~ 260 (260)
T PF02263_consen 236 LDPEFVEQLDELVKYIFSSAKVKTL 260 (260)
T ss_dssp S-HHHHHHHHHHHHHHHCCT---BE
T ss_pred CCHHHHHHHHHHHHHHhccCCcccC
Confidence 9999999999999999998888864
No 2
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=100.00 E-value=1.8e-51 Score=458.87 Aligned_cols=476 Identities=23% Similarity=0.287 Sum_probs=421.1
Q ss_pred CeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccc
Q 005055 42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121 (716)
Q Consensus 42 pi~LI~~d~~~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~ 121 (716)
|.|++ .+.+|+|.+|| |+.+|+.+++||+||+|+|.||+||||+||.++|++.||++++++.|||+||||||.|++
T Consensus 5 p~~~~-~~~~~~l~~~p-a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~-- 80 (552)
T KOG2037|consen 5 PMLLY-ENENGQLKVNP-ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHG-- 80 (552)
T ss_pred chhhh-hccccccccCc-chhHHhhccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecC--
Confidence 45454 46679999999 999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCceeEEEEeCCCCcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHHHHHHHHHHHHHhcC---CC--
Q 005055 122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG---GK-- 196 (716)
Q Consensus 122 ~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~---~~-- 196 (716)
++..+++||+||||+ ..+..++.|||+++.|+||+++||+.|+|+..+|.++++|+++++.+++.+.. ..
T Consensus 81 --k~~~~~l~Lld~eg~---~~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~ 155 (552)
T KOG2037|consen 81 --KSFLLNLVLLDTEGL---KGDNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAF 155 (552)
T ss_pred --Cccchhhhhhccccc---cCCccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccc
Confidence 466799999999998 45677899999999999999999999999999999999999999998877652 11
Q ss_pred CCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhHHHHHHHhhCCCCeEEeecCCCCCh
Q 005055 197 TTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 276 (716)
Q Consensus 197 ~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~i~~~F~~~~cf~l~~P~~~~ 276 (716)
++..++..+||.|.|..|||++++..+++++++++|++..|....| |
T Consensus 156 ~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g-----------~---------------------- 202 (552)
T KOG2037|consen 156 DDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYG-----------R---------------------- 202 (552)
T ss_pred cccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHH-----------H----------------------
Confidence 4556778899999999999999999999999999999988875433 1
Q ss_pred hhhhcccCCCCCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcC-CCCCccchHHHHHHHH
Q 005055 277 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNG-AVPTISSSWQSVEEAE 354 (716)
Q Consensus 277 ~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltG~~l~~l~~~yv~ain~g-~vP~i~s~~~~~~e~e 354 (716)
..+.++...|.++|.+.|+.+...+|.+++.+...|.+ +|..++|+.+..|...|+.+++.+ .+||..++..++++++
T Consensus 203 ~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~ 282 (552)
T KOG2037|consen 203 LALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAE 282 (552)
T ss_pred HHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhccc
Confidence 23445556788899999999999999999999999999 778999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC-C--CC-ChHHHHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 355 CRRAYDSATETYMSTFDRS-K--PP-EEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVY 430 (716)
Q Consensus 355 ~~~a~~~A~~~Y~~~m~~~-~--p~-~e~eL~~~H~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~l~~~~e~~~~~n~ 430 (716)
|..+++.+.++|...|.+. . |. ...+++..|..+..++...|....| ++..+-|++++...+..... +++.|.
T Consensus 283 n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~f--k~y~~i~q~~~g~~lp~pks-~l~~~a 359 (552)
T KOG2037|consen 283 NPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYF--KAYDKIFQKKLGETLPGPKS-MLKANA 359 (552)
T ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHH--HHHHHHhhHhhhhhCcCccc-HHHHHH
Confidence 9999999999999999886 3 32 3378899999999999999999888 47778899888888877777 889999
Q ss_pred HHHHHHHHHHHHH----HHHHHHhh-ccCCCCchHHHHHHHHHHHHHHhccc-CCCchhHHHHHHHh--hhccchHHHHH
Q 005055 431 MEADIRCSSAIQS----MERKLRAA-CHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILDLV 502 (716)
Q Consensus 431 ~~s~~~C~~~l~~----le~~l~~~-~~~~~~~~~~~~~~l~~ll~eY~~~~-~GP~K~~~L~~FLq--~~~~~~il~~~ 502 (716)
.++...|.+..+. +++.+..+ .+..++++..+.+.+..+...|...+ +|-+...+...|++ +.+...+++.+
T Consensus 360 ea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~ 439 (552)
T KOG2037|consen 360 EASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTD 439 (552)
T ss_pred HHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988875 66667777 78889999999999999998888876 66777788888887 67778999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005055 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYT 563 (716)
Q Consensus 503 k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~ 563 (716)
+.+++. .+.....|.+.++......++....-.....|....+.+++.+.++..+++.-+
T Consensus 440 ~~~~~s-~~~~~~~r~~A~a~~~~~~~~~~~~~~~~~~me~~a~~~~~~~~q~~~~~~~~a 499 (552)
T KOG2037|consen 440 QALTES-KKLFLAARTPAEAAAKEAILLILSGLEGFIGMEIAARLIEETMKQLVEELETWA 499 (552)
T ss_pred HHHhcc-chhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999866665443
No 3
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=100.00 E-value=7.1e-46 Score=380.41 Aligned_cols=219 Identities=38% Similarity=0.585 Sum_probs=191.5
Q ss_pred ccCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCC
Q 005055 66 LVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (716)
Q Consensus 66 ~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~ 145 (716)
.++.||+||||+|++|+|||||||+|+|..+||+||++..+||+|||||+.|+.. +.++.|+||||||+++.+.+.
T Consensus 2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCc
Confidence 3678999999999999999999999999988999999999999999999999864 455789999999999998888
Q ss_pred -cchhHHHHHhhhccceEEEccCCCCchHhhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccC
Q 005055 146 -TYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDN 224 (716)
Q Consensus 146 -~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g 224 (716)
.+|++||+|++||||++|||+.+.+++.+++.|+.+++++... ++.........++|.|+||||||++.....+
T Consensus 78 ~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~ 152 (224)
T cd01851 78 FEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEV-----LGLAGLTEFEKPKPLLLFVVRDFSLDTPLEN 152 (224)
T ss_pred hhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHh-----hhhhhhhhcccCCCceEEEEecCcCCccccc
Confidence 8999999999999999999999999999999999999886211 1111233556789999999999999877655
Q ss_pred ccCChHHHHHHhhccccCCChhhHhhhHHHHHHHhhC--CCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHH
Q 005055 225 RKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALT 302 (716)
Q Consensus 225 ~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~i~~~F--~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~ 302 (716)
..++ .+.....+..|.+|.+|+.+| ++++||++++|+.+...+++ +++..+++|+|.++++.|+
T Consensus 153 ~~~~------------~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~ 218 (224)
T cd01851 153 LDIT------------EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELR 218 (224)
T ss_pred cccc------------cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHH
Confidence 4444 344556788999999999999 99999999999999888877 7899999999999999999
Q ss_pred HHHhc
Q 005055 303 KFVFE 307 (716)
Q Consensus 303 ~~i~~ 307 (716)
+++++
T Consensus 219 ~~~~~ 223 (224)
T cd01851 219 DRFFS 223 (224)
T ss_pred HHhcC
Confidence 99875
No 4
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=6e-38 Score=334.68 Aligned_cols=247 Identities=31% Similarity=0.470 Sum_probs=220.5
Q ss_pred CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CCC-hHHHHHHHHHHHHH
Q 005055 315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-K-PPE-EVALGEAHEAAVQK 391 (716)
Q Consensus 315 ~g~~ltG~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~~m~~~-~-p~~-e~eL~~~H~~~~~~ 391 (716)
||.+|||++|++|+++||+|||+|+||||+|+|.+|++++|.+|+++|+++|...|++. . |.+ .++|.+.|..|.++
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987 3 444 58999999999999
Q ss_pred HHHHhhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCCchHHHHHHHH
Q 005055 392 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD 467 (716)
Q Consensus 392 Al~~F~~~s~g~~~~~~~~~~~L~~~l~~~~e~~~~~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~l~ 467 (716)
|+.+|++++|| |..++|+++|...|.+.+++|++.|+.+|..+|+++|+. |+++|+.+++++||+|+.|+++++
T Consensus 81 A~~~F~~~s~~--d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~ 158 (297)
T PF02841_consen 81 ALEVFMKRSFG--DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD 158 (297)
T ss_dssp HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 99999999998 477899999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHhccc-CCCchhHHHHHHHh--hhccchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005055 468 GLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY 544 (716)
Q Consensus 468 ~ll~eY~~~~-~GP~K~~~L~~FLq--~~~~~~il~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~ 544 (716)
.++.+|+..| +||....+|..||+ ..+++.|+++++++++. ++++...+.+.++++.+...+.+.++..++.++..
T Consensus 159 ~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~-ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~ 237 (297)
T PF02841_consen 159 ELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEK-EKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ 237 (297)
T ss_dssp HHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 78888888999987 45778999999999998 99999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 005055 545 LKRYDDAINDKKKLADDYTS 564 (716)
Q Consensus 545 ~k~lee~i~dlk~~~e~~~~ 564 (716)
.++|++++.+|+++++....
T Consensus 238 ~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 238 ERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776554
No 5
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=279.89 Aligned_cols=380 Identities=18% Similarity=0.186 Sum_probs=305.9
Q ss_pred CCCCCeeEEEe--CCCCceeeCHHHHHHhh----ccCCCEEEEEeeCCCCCChhHHHHHhhCC-----------------
Q 005055 38 GPARPIRLVYC--DEKGKFRMDPEAVAALQ----LVKEPIGVVSVCGRARQGKSFILNQLLGR----------------- 94 (716)
Q Consensus 38 ~~~~pi~LI~~--d~~~~l~v~~eAl~~L~----~i~~pV~VVsV~G~~rtGKS~LlN~llg~----------------- 94 (716)
..|.||+.|.. ..++.|.+|+.|.+.+- ..+.||++++|+|.++.||||++|.+|-.
T Consensus 29 ~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~ 108 (552)
T KOG2037|consen 29 KQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFAL 108 (552)
T ss_pred cCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCccchhhhhcc
Confidence 56677777766 56678999999999863 24689999999999999999999998722
Q ss_pred --CCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHHHHhhhccceEEEccCCCCch
Q 005055 95 --SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (716)
Q Consensus 95 --~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (716)
..||.|..+..+.|.|||||..|+....++|.++++.++||+|..+...+.......|++++++||+.|||....|++
T Consensus 109 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~e 188 (552)
T KOG2037|consen 109 APLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQE 188 (552)
T ss_pred chhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCH
Confidence 246777778889999999999998888899999999999999976555555667889999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhH
Q 005055 173 SAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNE 252 (716)
Q Consensus 173 ~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~ 252 (716)
+++++|+++++.+....-. .+...|-.+.+++|||+.+....-..-+.+..|.+.|+ ..+++.++...
T Consensus 189 d~l~~l~l~~~~g~~~l~~---------~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~---v~~~~~~el~~ 256 (552)
T KOG2037|consen 189 DDLQHLSLFTEYGRLALAH---------LFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLK---VNGPQLEELVQ 256 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHhhhhhhHHHHHhcccccccccee---ecccchHHHHH
Confidence 9999999999998744211 11222336788999999876532111233455666654 34567888888
Q ss_pred HHHHHHhhCCCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHh--ccCCccccCCcccchhhHHHHHHH
Q 005055 253 IRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRPKQVGATVLTGPVLIGITES 330 (716)
Q Consensus 253 iR~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~--~~~~pK~~~g~~ltG~~l~~l~~~ 330 (716)
+|++++.+|-++.||.+|+|+.....++..++ ...++.+.|..++...+..+. .....|.++|..+|+..+..+++.
T Consensus 257 ~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk~ 335 (552)
T KOG2037|consen 257 LRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFKA 335 (552)
T ss_pred HHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHHH
Confidence 99999999999999999999986554443332 455678888888865554443 356788889999999999999999
Q ss_pred HHHHHh---cCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCChHHHHHHHHHHHHHHHHHhhhc-c-C
Q 005055 331 YLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----PPEEVALGEAHEAAVQKALAVYNAG-A-V 401 (716)
Q Consensus 331 yv~ain---~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~~m~~~~----p~~e~eL~~~H~~~~~~Al~~F~~~-s-~ 401 (716)
|...+. .-.+|...+...+.+++.+.+++..|...|...|++.+ ...+..|...|...+..|+.+|... + +
T Consensus 336 y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~i 415 (552)
T KOG2037|consen 336 YDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGI 415 (552)
T ss_pred HHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999 56899999999999999999999999999999998864 2467899999999999999999886 4 7
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 402 GVGLARKKYEGLLQKFFRKAFEDHKKNVY 430 (716)
Q Consensus 402 g~~~~~~~~~~~L~~~l~~~~e~~~~~n~ 430 (716)
|..++.+.|.+.|...+...+..++..++
T Consensus 416 g~~e~~~~~lq~LE~v~~~l~~~~~~~~~ 444 (552)
T KOG2037|consen 416 GAEEVCQRYLQSLESVEEELLQTDQALTE 444 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77788888888888877777666666553
No 6
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=99.96 E-value=2e-26 Score=271.58 Aligned_cols=356 Identities=19% Similarity=0.257 Sum_probs=251.1
Q ss_pred eCCCCCChhHHHHHhhCCCCcccccc--CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccC----CcchhH
Q 005055 77 CGRARQGKSFILNQLLGRSSGFQVAS--THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT----GTYSTQ 150 (716)
Q Consensus 77 ~G~~rtGKS~LlN~llg~~~gF~~g~--~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~----~~~d~~ 150 (716)
+|+++||||||||.|||++ |.+++ +++.||+||||-..+... ...-.+++||+||+|+.+++ .++.+.
T Consensus 1 ~g~qssgkstlln~lf~t~--f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~d~eg~d~~er~~~~~fe~~~a 74 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQ--FDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVLDVEGTDGRERGEDQDFERKSA 74 (742)
T ss_pred CCCCCCcHHHHHHHHHCCC--ccccccccccccchhhHHHhccccc----cCCCceEEEeCCCCCchhhccccchHHHHH
Confidence 5999999999999999999 99987 567899999998765421 11246889999999988753 345788
Q ss_pred HHHHhhhccceEEEcc----CCCCchHhhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCcc
Q 005055 151 IFSLAVLLSSMFIYNQ----MGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRK 226 (716)
Q Consensus 151 IFaLa~LLSS~~IyN~----~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~ 226 (716)
+||||+ |.++|.|+ .|..+.+.+.-|..|.++.-.+..++. -....+.++||||||+-....+.-.
T Consensus 75 lf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~--------~~~~k~~llfviRD~~~~tp~e~l~ 144 (742)
T PF05879_consen 75 LFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSK--------SNDRKTLLLFVIRDHTGVTPLENLE 144 (742)
T ss_pred HHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcc--------cCCCCceEEEEEeeCCCCCcHHHHH
Confidence 999985 99999998 688888899999999988654433221 0124678999999998411101111
Q ss_pred CChHHHHHHhhccccCCChhhHhhhHHHHHHHhhCCCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHh
Q 005055 227 ITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF 306 (716)
Q Consensus 227 ~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~ 306 (716)
-|-.+.|++++.....+.. -. ...|..|| ++..++|||.... .+.|.+++..|++.+.
T Consensus 145 ~~l~~dl~~iW~~i~kP~~---~~---~~~~~d~F-d~~f~~LpH~~~~---------------~e~F~~~v~~Lr~rf~ 202 (742)
T PF05879_consen 145 ETLREDLEKIWDSISKPEG---FE---NSSLSDFF-DLEFTALPHKILQ---------------PEKFNEDVAKLRQRFV 202 (742)
T ss_pred HHHHHHHHHHHHhccCccc---cc---CCChhhee-eeeeeccCchhhh---------------HHHHHHHHHHHHHHHh
Confidence 1233444555544321110 01 13588899 8999999996553 4589999999999988
Q ss_pred cc-------CCccccCCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC-----
Q 005055 307 ER-------TRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----- 374 (716)
Q Consensus 307 ~~-------~~pK~~~g~~ltG~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~~m~~~~----- 374 (716)
.. .+|. ..+.|++.+|..|++..|+.|.++.--.+++.-..||+..|.+++.+++..|...+....
T Consensus 203 ~~~~~~~~~~~~~--y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~ 280 (742)
T PF05879_consen 203 DSKNIEDGLFKPE--YHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSE 280 (742)
T ss_pred ccCcCCCCCCchh--hcCCCChHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 75 2222 334577778999999999999999877888888999999999999999999998754311
Q ss_pred ------CCChHHHHHHHHHHHHHHHHHhhhccCC-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 375 ------PPEEVALGEAHEAAVQKALAVYNAGAVG-VGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERK 447 (716)
Q Consensus 375 ------p~~e~eL~~~H~~~~~~Al~~F~~~s~g-~~~~~~~~~~~L~~~l~~~~e~~~~~n~~~s~~~C~~~l~~le~~ 447 (716)
...-..|.........+|++.|+..+-. ...++.+.+.+|...|...+...-.. .-...+..++..+.+.
T Consensus 281 l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~---qL~~L~~~~l~~Fk~~ 357 (742)
T PF05879_consen 281 LEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQK---QLKHLRKKLLESFKEA 357 (742)
T ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 2334689999999999999999987532 24667777777777777665543221 1234566777777777
Q ss_pred HHhhccCCCCchHHH-HHHHHHHHHHHhcc
Q 005055 448 LRAACHSSDASIDNV-VKVLDGLISEYETS 476 (716)
Q Consensus 448 l~~~~~~~~~~~~~~-~~~l~~ll~eY~~~ 476 (716)
+..... .+.+|... ......++..|+..
T Consensus 358 l~~~lk-~~~~Fa~~v~~~~~~~~~~F~~~ 386 (742)
T PF05879_consen 358 LSSALK-SGEDFAEAVRECKQSALEEFEES 386 (742)
T ss_pred HHHHhh-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 664332 23355433 33455556666654
No 7
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=99.95 E-value=4.1e-25 Score=240.09 Aligned_cols=273 Identities=23% Similarity=0.365 Sum_probs=204.2
Q ss_pred CCCeeEEEeCCCCceeeCHHHHHHhhc-c-----CCCEEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccce
Q 005055 40 ARPIRLVYCDEKGKFRMDPEAVAALQL-V-----KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKG 110 (716)
Q Consensus 40 ~~pi~LI~~d~~~~l~v~~eAl~~L~~-i-----~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkG 110 (716)
....||| |+++.| |..+++...+ + .-.+.||||.|++.||||||||.|+|++ |.... +.+.+|||
T Consensus 4 r~stQlI--De~keF--n~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTn--F~~MDA~~gRqQTTKG 77 (772)
T KOG2203|consen 4 RCSTQLI--DEEKEF--NVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTN--FREMDAFKGRQQTTKG 77 (772)
T ss_pred cccceee--cccccc--chhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccC--hHHHHhhhccccccch
Confidence 4457898 666777 7778888764 2 3489999999999999999999999998 77654 57789999
Q ss_pred EEeeccccccccCCCCceeEEEEeCCCCcccccC----CcchhHHHHHhhhccceEEEcc----CCCCchHhhhhhHHHH
Q 005055 111 LWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT----GTYSTQIFSLAVLLSSMFIYNQ----MGGIDESAIDRLSLVT 182 (716)
Q Consensus 111 IWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~----~~~d~~IFaLa~LLSS~~IyN~----~g~i~e~~l~~L~~v~ 182 (716)
|||... .|-+..+++||.||.|+.+++ .+..+.+||+|+ |-++|.|+ .|..+.+++-.|..|.
T Consensus 78 IWlar~-------~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTVf 148 (772)
T KOG2203|consen 78 IWLARC-------AGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTVF 148 (772)
T ss_pred hhHHhh-------cCCCCceEEEecccCCcccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHHH
Confidence 999753 233446899999999887763 445789999996 99999997 5777788888899988
Q ss_pred HHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhc--------cccCCChhhHhhhHHH
Q 005055 183 QMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALR--------PVQGSGRDIAAKNEIR 254 (716)
Q Consensus 183 el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~--------~~~g~~~~~~~~n~iR 254 (716)
++.- ++.+ .+.+ .-.++||+||++. .||-+-|+.+|+ ..+.+ ..-.|
T Consensus 149 eV~l--rLF~--~rk~-------k~~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KP---e~~e~--- 203 (772)
T KOG2203|consen 149 EVNL--RLFS--PRKN-------KTLLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKP---EGHEN--- 203 (772)
T ss_pred HHHH--HHhC--CCCC-------ceEEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCc---ccccC---
Confidence 8743 3322 1110 2358999999984 355555555543 33211 11112
Q ss_pred HHHHhhCCCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHhcc-CCccccCC---cccchhhHHHHHHH
Q 005055 255 DSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITES 330 (716)
Q Consensus 255 ~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~~~-~~pK~~~g---~~ltG~~l~~l~~~ 330 (716)
..|..|| ++....|+|-... .+.|.++|..|++.++.+ ..|--+.| ..+....|.-+.+.
T Consensus 204 s~l~DfF-dv~~v~Ls~~~~k---------------edqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~q 267 (772)
T KOG2203|consen 204 SPLNDFF-DVEFVGLSHKELK---------------EDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAEQ 267 (772)
T ss_pred Cchhhhh-ceeeeecchHHHH---------------HHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHHH
Confidence 3567888 7788888773322 467999999999988866 66666544 45777789999999
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 005055 331 YLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMS 368 (716)
Q Consensus 331 yv~ain~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~ 368 (716)
.|+.|..+.-..++..-..||...|.++..++++.|..
T Consensus 268 iWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fit 305 (772)
T KOG2203|consen 268 IWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFIT 305 (772)
T ss_pred HHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhh
Confidence 99999998766666667789999999999999998875
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.48 E-value=2.9e-10 Score=122.57 Aligned_cols=207 Identities=18% Similarity=0.245 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 005055 461 NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY 540 (716)
Q Consensus 461 ~~~~~l~~ll~eY~~~~~GP~K~~~L~~FLq~~~~~~il~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~ 540 (716)
.....++.+..+|... .-....++..|. ..++..+........++.++.++.+++.++++.+++....
T Consensus 79 ~l~~e~~~~r~k~e~e-----------~~~~~~le~el~-~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~ 146 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEE-----------LAERKDLEEELE-SLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEE 146 (312)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh-hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3445556666666543 112233333333 4456666668888899999999999999999999875522
Q ss_pred HH-------------HHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 005055 541 KS-------------EYLKRYDDAINDKKKLADDYTSRI-----NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (716)
Q Consensus 541 ~~-------------~~~k~lee~i~dlk~~~e~~~~~~-----~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~ 602 (716)
+. .....+...|.+++..++....++ .+|+.++..+..........+.+++.|+.++++.++
T Consensus 147 L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~ 226 (312)
T PF00038_consen 147 LREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQ 226 (312)
T ss_dssp TSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhh
Confidence 22 222367888999999999888877 899999999999999999999999999999999999
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005055 603 QV---LTKQKAMEDQVCSEIEVLKSR----STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 675 (716)
Q Consensus 603 ~~---i~~~k~~~~~~~~~i~~l~~r----~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~ 675 (716)
.+ |...+...+.|..+|.+++.+ ....++.+..++.++..++.++..+.++|+.|+ +.|..||.+|++||+|
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll-~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL-DVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Confidence 99 888888899999999999876 666889999999999999999999999999999 8999999999999999
Q ss_pred hHHHH
Q 005055 676 SKEMQ 680 (716)
Q Consensus 676 ~e~~q 680 (716)
|++-.
T Consensus 306 LEgEE 310 (312)
T PF00038_consen 306 LEGEE 310 (312)
T ss_dssp HTCHC
T ss_pred HhCcc
Confidence 98643
No 9
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=7.2e-08 Score=101.91 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=85.8
Q ss_pred CCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCC-------Ccc-ccccC----CCccc
Q 005055 41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS-------SGF-QVAST----HRPCT 108 (716)
Q Consensus 41 ~pi~LI~~d~~~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~-------~gF-~~g~~----~~~~T 108 (716)
++++||. +.|. ++..|.++|... ..+.||+|+|+++||||+|||.|.+.+ -.| ++++. ....|
T Consensus 163 ~s~~li~--d~g~--~~d~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt 237 (491)
T KOG4181|consen 163 RSTPLIV--DNGI--FNDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQT 237 (491)
T ss_pred CCcceee--cccc--hhhHHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccce
Confidence 3566773 2344 488898888766 679999999999999999999999863 234 22221 22457
Q ss_pred ceEEeeccccccccCCCCceeEEEEeCCCCccc-----------------ccCCcc----hhHHHHHhhhccceEEEccC
Q 005055 109 KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY-----------------DQTGTY----STQIFSLAVLLSSMFIYNQM 167 (716)
Q Consensus 109 kGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~-----------------~~~~~~----d~~IFaLa~LLSS~~IyN~~ 167 (716)
.||-.+.. . -.+|+|||+-+-++ ..+.+| .-.+.|+..-+|.++|.=+.
T Consensus 238 ~~Id~~i~---------q-~~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d 307 (491)
T KOG4181|consen 238 HKIDPNIG---------Q-KSILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVID 307 (491)
T ss_pred eccccccc---------c-ceEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEec
Confidence 77766532 2 14666666655332 222222 22344444445777777555
Q ss_pred CCCchHhhhhhHHHHHHHHHHHHHh---cCCCCCCCcccccCCeEEEEe
Q 005055 168 GGIDESAIDRLSLVTQMTKHIRIRA---SGGKTTPSELGQFSPIFVWLL 213 (716)
Q Consensus 168 g~i~e~~l~~L~~v~el~~~i~~k~---~~~~~~~~e~~~~~P~f~wlv 213 (716)
+.-|++-+. +.+.++.++-.- ++... -...+.|.+|||-
T Consensus 308 ~~~d~~lir----~L~~Ae~~rP~laifrh~~~---~~r~~~p~lVFv~ 349 (491)
T KOG4181|consen 308 GLADEQLIR----LLNAAERLRPTLAIFRHCKG---YVRDHMPQLVFVR 349 (491)
T ss_pred chhHHHHHH----HHHHHHhhCcccCccccccc---cccccCcceEEEe
Confidence 554443333 334444443110 00100 0113578988884
No 10
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.55 E-value=6.6e-05 Score=85.28 Aligned_cols=181 Identities=11% Similarity=0.159 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHHHH-
Q 005055 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY-------------KSEYLKRYDDAINDKKKLADDYTSRI- 566 (716)
Q Consensus 501 ~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~-------------~~~~~k~lee~i~dlk~~~e~~~~~~- 566 (716)
..++..+.-..-+..+..++.++..+++++...++..-.. -.++...|...|.+++.++|....+.
T Consensus 187 ~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR 266 (546)
T KOG0977|consen 187 RARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNR 266 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444545566677777888888888888655544321 12334467888888888888877776
Q ss_pred ----HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Q 005055 567 ----NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSR----STAAEARLAA 635 (716)
Q Consensus 567 ----~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r----~~~~eerl~~ 635 (716)
.||..|++.+........-.....+.|....+.....+ +.+.......+..+|.+|+.. ....|+-|++
T Consensus 267 ~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~ 346 (546)
T KOG0977|consen 267 KDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALND 346 (546)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 78999998888433332222222222222222222222 222222233466666666655 4566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 005055 636 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR 682 (716)
Q Consensus 636 ~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~ 682 (716)
-..++...++||...-.+|+.|+ +.|..|+-+|+.||+||+....+
T Consensus 347 kd~~i~~mReec~~l~~Elq~Ll-D~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 347 KDAEIAKMREECQQLSVELQKLL-DTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-chHhHHHhHHHHHHHHhccccCC
Confidence 88888888999999999999999 99999999999999999988776
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=98.28 E-value=1.1e-06 Score=92.49 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=44.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccC----CCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
...++|||+|.+.+|||||||+|+|.. .++-+. ++..-+||..- .+..++|+||+|+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~-----------~~~QiIfvDTPGih 65 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTT-----------DNAQIIFVDTPGIH 65 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEc-----------CCceEEEEeCCCCC
Confidence 357899999999999999999999987 444333 23333677753 13679999999984
No 12
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.23 E-value=5.2e-06 Score=83.43 Aligned_cols=62 Identities=27% Similarity=0.311 Sum_probs=42.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
|+++|.+++|||+|+|.|+|.. +|..+....++|+.+=.+...+ +| ..+.|+||+|+++...
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~-----~~--~~i~viDTPG~~d~~~ 64 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVW-----DG--RRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEE-----CC--eEEEEEECcCCCCccC
Confidence 7899999999999999999984 5766643334444332221111 22 4689999999976543
No 13
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.11 E-value=3.6e-05 Score=80.69 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.6
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..+-..|.|+|..++|||+|+|.|+|.. .+.++ ...++|..+-+...+ .+| ..|.|+||+|++..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~-~~~~~T~~~~~~~~~-----~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGER-KAATS-AFQSETLRVREVSGT-----VDG--FKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCC-CcccC-CCCCceEEEEEEEEE-----ECC--eEEEEEECCCcCcc
Confidence 3455679999999999999999999975 34443 334566655443221 123 56899999999754
No 14
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.10 E-value=5.8e-06 Score=75.64 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=40.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
|+|+|++++|||+|+|.|+|.. ...+++. .++|..+..-..++ ++ ..+.|+||+|+++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~-~~~~~~~-~~~T~~~~~~~~~~-----~~--~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK-LAKVSNI-PGTTRDPVYGQFEY-----NN--KKFILVDTPGINDG 60 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST-SSEESSS-TTSSSSEEEEEEEE-----TT--EEEEEEESSSCSSS
T ss_pred EEEECCCCCCHHHHHHHHhccc-ccccccc-ccceeeeeeeeeee-----ce--eeEEEEeCCCCccc
Confidence 7899999999999999999854 3445443 56777763311111 12 45679999998643
No 15
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.08 E-value=1e-05 Score=82.70 Aligned_cols=102 Identities=23% Similarity=0.377 Sum_probs=57.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcc-hhHHH
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-STQIF 152 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~-d~~IF 152 (716)
|-++|..|+|||++.|.|+|.. .|..+.+..++|...-..... .+| ..|.++||+|+++.+.+... -..|.
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~-----~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~ 74 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGE-----VDG--RQVTVIDTPGLFDSDGSDEEIIREIK 74 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEE-----ETT--EEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeee-----ecc--eEEEEEeCCCCCCCcccHHHHHHHHH
Confidence 5689999999999999999986 488887777777765443321 133 56889999999655542211 11122
Q ss_pred HHhhhcc----ceEEEcc-CCCCchHhhhhhHHHHHH
Q 005055 153 SLAVLLS----SMFIYNQ-MGGIDESAIDRLSLVTQM 184 (716)
Q Consensus 153 aLa~LLS----S~~IyN~-~g~i~e~~l~~L~~v~el 184 (716)
- ++.++ .++||=. .+.+++.+...+..+.++
T Consensus 75 ~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 75 R-CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEI 110 (212)
T ss_dssp H-HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHH
T ss_pred H-HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHH
Confidence 1 11122 2333332 237888887777766555
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.04 E-value=0.021 Score=72.12 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.2
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
++.+|+||.|+|||+||..|.
T Consensus 24 ~~~~i~G~NGsGKS~ildAi~ 44 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIGDAIL 44 (1164)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367889999999999999763
No 17
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.99 E-value=7.5e-05 Score=86.49 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=44.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
.-|.|+|..+.|||+|+|.|+|.. .|.++ ...++|..+-.+... .+| ..|.|+||+|+++...
T Consensus 119 lrIvLVGKTGVGKSSLINSILGek-vf~vs-s~~~~TTr~~ei~~~-----idG--~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEV-KFSTD-AFGMGTTSVQEIEGL-----VQG--VKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccc-ccccc-CCCCCceEEEEEEEE-----ECC--ceEEEEECCCCCcccc
Confidence 359999999999999999999984 46554 344666665333211 133 4689999999976543
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.94 E-value=0.05 Score=68.77 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005055 556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 635 (716)
Q Consensus 556 k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~ 635 (716)
+..++.+..+...++.....+..+...+..+++....++.++..+.+.+ +.....+..+++.++.+...++.++..
T Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l----~~~l~~l~~~~~~~~~~~~~l~~~~~~ 438 (1164)
T TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL----QEELQRLSEELADLNAAIAGIEAKINE 438 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444444444433333322 222344555556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 005055 636 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (716)
Q Consensus 636 ~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~ 696 (716)
+..++...+.+....+++++.+- +....++..+...+.-+.+.+.+...++.++.+.-..
T Consensus 439 l~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLA-ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677776665 4445555666666666666666666666666554433
No 19
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.93 E-value=0.046 Score=58.91 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=91.6
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E 646 (716)
..+-..+..++..+....+.|...++++.+++.+++.+-.+.+...+......+.++.+..+.++++..|.+.+...+.
T Consensus 179 ~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~- 257 (297)
T PF02841_consen 179 QEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE- 257 (297)
T ss_dssp HHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444456688888888899999999999999999999988888889999999999999999999999999987666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Q 005055 647 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (716)
Q Consensus 647 ~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~ 692 (716)
.|.++|+.++ +.|..... +.+.++.+.+.+.++.|+.+
T Consensus 258 --~~~~e~e~~l-~~k~~eq~-----~~l~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 258 --QLLQEQERLL-EQKLQEQE-----ELLKEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp --HHHHHHHHHH-HHHHHHHH-----HHHHCT-HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 8889999988 45544333 23566677888888888765
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.92 E-value=0.052 Score=58.60 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 005055 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 582 (716)
Q Consensus 503 k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~ 582 (716)
++.++.+..++..+...+..+..+++.++.+++...+. .+.++..|..+++..++......+|+.++..|.+++..
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~----~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAE----RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666554322 33455555666666666555556666666666555555
Q ss_pred hH
Q 005055 583 LS 584 (716)
Q Consensus 583 ~~ 584 (716)
+.
T Consensus 136 l~ 137 (312)
T PF00038_consen 136 LK 137 (312)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.90 E-value=0.068 Score=67.46 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHH---hhCCC
Q 005055 73 VVSVCGRARQGKSFILNQ---LLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~---llg~~ 95 (716)
+++|+||.|+|||+||.. ++|..
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCC
Confidence 789999999999999965 56644
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.82 E-value=0.0036 Score=65.21 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Q 005055 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLS 584 (716)
Q Consensus 508 ~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dl---k~~~e~~~~~~~~l~~k~~~le~~~~~~~ 584 (716)
..+....++..+....+..+..|..++...........++|++.-..+ ....+.+..+...++.++..|++++...+
T Consensus 75 e~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 75 ESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 335556667777777888888888888888888888888888765555 77788888899999999999999998888
Q ss_pred HhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNE---ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 585 ~~le~~k~e---~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
..|.+++.- .++..-.|+..|.. |..++.++..|...+|.++..++.+++....++..|+.+|..+-
T Consensus 155 ~~lk~lE~~~~~~~~re~~~e~~i~~-------L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEYEEKIRD-------LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665544 55556667776665 77888888889999999999999999999999999999998654
No 23
>PRK11637 AmiB activator; Provisional
Probab=97.82 E-value=0.02 Score=64.91 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHH
Q 005055 663 AALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (716)
Q Consensus 663 a~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~ 695 (716)
+.|+..+..++..+.+.+..+..|+..+....+
T Consensus 222 ~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 222 TGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666655433
No 24
>PRK00089 era GTPase Era; Reviewed
Probab=97.80 E-value=7.9e-05 Score=79.58 Aligned_cols=59 Identities=31% Similarity=0.520 Sum_probs=41.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
..++|+|+|++++|||+|+|.|+|..-. .+++ +++....||+.. .+..++|+||+|+..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~-----------~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTE-----------DDAQIIFVDTPGIHK 65 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEc-----------CCceEEEEECCCCCC
Confidence 5689999999999999999999997621 1222 222223455542 125799999999854
No 25
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.77 E-value=0.022 Score=71.87 Aligned_cols=9 Identities=33% Similarity=0.279 Sum_probs=3.5
Q ss_pred EEEeCCCCc
Q 005055 45 LVYCDEKGK 53 (716)
Q Consensus 45 LI~~d~~~~ 53 (716)
+|-++..|+
T Consensus 28 i~G~NGsGK 36 (1179)
T TIGR02168 28 IVGPNGCGK 36 (1179)
T ss_pred EECCCCCCh
Confidence 333333343
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.76 E-value=0.015 Score=67.87 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhh
Q 005055 71 IGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~ll 92 (716)
.++..|+|+.++|||+|+..+.
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~ 48 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALT 48 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999999865
No 27
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.76 E-value=4.4e-05 Score=74.33 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=41.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCccccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
-|+++|.+.+|||+|.|+|.|.. ..+|+ ++..+..|.|-+.. ..+.|+||+|+.+...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~-----------~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGD-----------QQVELVDLPGIYSLSS 62 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETT-----------EEEEEEE----SSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecC-----------ceEEEEECCCcccCCC
Confidence 38999999999999999999987 55543 23345778888731 5789999999866543
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=0.14 Score=66.09 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEeeCCCCCChhHHHHHh
Q 005055 72 GVVSVCGRARQGKSFILNQL 91 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~l 91 (716)
.+++|+||.|+|||+|+..|
T Consensus 29 ~~~~I~G~NGaGKTTil~ai 48 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECL 48 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 29
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.67 E-value=8.8e-05 Score=78.53 Aligned_cols=56 Identities=30% Similarity=0.538 Sum_probs=40.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccc-ccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQ-VAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~-~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+.|+|+|.+++|||+|+|.|+|.. +. +++ |++...+|||... + ..++|+||+|+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~~---------~--~qii~vDTPG~~~ 60 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTTG---------A--SQIIFIDTPGFHE 60 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEcC---------C--cEEEEEECcCCCC
Confidence 368999999999999999999976 32 222 3333456776431 1 3589999999864
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.67 E-value=0.13 Score=66.96 Aligned_cols=182 Identities=20% Similarity=0.292 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k---~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~ 586 (716)
......+-.+...+..+...+..++++.+.......+ .++..|.+++++.+....+...+......++..+..+.++
T Consensus 1258 ~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~ 1337 (1930)
T KOG0161|consen 1258 ERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQ 1337 (1930)
T ss_pred HHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666667777777777777766555544 5667777778887776666666666666666555555554
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 587 V--------------DSLKNEISDWKRKYDQVLTK----QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 587 l--------------e~~k~e~~e~~r~y~~~i~~----~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
+ ..+..++.+|+++|+..+.. ....+..++..+.+++.....+..++.++++.....++|+.
T Consensus 1338 leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~ 1417 (1930)
T KOG0161|consen 1338 LEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELE 1417 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4 44556788999999998553 33344566777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Q 005055 649 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (716)
Q Consensus 649 ~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~ 692 (716)
+-..+-+... .+=++|++....+++++.+.-.+.+.+..|+..
T Consensus 1418 d~~~d~~~~~-~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1418 DLQLDLERSR-AAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666 566778888888888888777777777777665
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.66 E-value=0.26 Score=60.15 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005055 551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 630 (716)
Q Consensus 551 ~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~e 630 (716)
.|..+++-++.+..+.+.+..++...+-.+.-..+.++..++.+.+++.... ..+.+++.+.++++..++
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----------~~~~~~~~e~e~k~~~L~ 407 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----------NELGSELEERENKLEQLK 407 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444332 223344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHH
Q 005055 631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED 684 (716)
Q Consensus 631 erl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~ 684 (716)
.+...+++++.+.++|..+-++++..-= +.+...+..|.+.++.++..+.-=.
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~~~~-ee~~~i~~~i~~l~k~i~~~~~~l~ 460 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAKEEE-EEKEHIEGEILQLRKKIENISEELK 460 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666666665555 5666677777777777776664333
No 32
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.66 E-value=0.00023 Score=67.40 Aligned_cols=61 Identities=26% Similarity=0.475 Sum_probs=40.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
.+|+++|+.++|||+|+|.|+|.. +.+......+|+ .+.+... ...++.++++||+|+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~--~~~~~~~~~~~~-~~~~~~~------~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTR-NRIRGIY------TDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc--eEeccCCCCcee-ceEEEEE------EcCCeEEEEEECCCCCcc
Confidence 479999999999999999999876 333322222233 2333221 122467999999998643
No 33
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.62 E-value=0.00035 Score=68.94 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
....-|.|+|..++|||+|+|+|+|......+++ ..++|.++=+|..+ + .+.|+||+|++.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~-------~---~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK-TPGRTQLINFFEVN-------D---GFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCcceEEEEEEeC-------C---cEEEEeCCCCcc
Confidence 3444679999999999999999998752223333 23567776555321 1 488999999864
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.62 E-value=0.048 Score=62.55 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=24.7
Q ss_pred ccCCeEEEEeecccccccccCccCChHHHHHHhhcccc
Q 005055 204 QFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241 (716)
Q Consensus 204 ~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~ 241 (716)
.+.|.|.|-=|||..-++.+- -|.++|.-..|.+.|
T Consensus 27 tlt~~~~ps~~DWIGiFKVGw--~s~rdY~Tf~Wa~~p 62 (546)
T PF07888_consen 27 TLTPGFHPSSKDWIGIFKVGW--SSTRDYYTFVWAPVP 62 (546)
T ss_pred ecCCCCCCCCCCeeEEeecCC--CchhheeeEEeeccC
Confidence 456788888899987555432 366788777776554
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.61 E-value=0.24 Score=64.63 Aligned_cols=177 Identities=16% Similarity=0.256 Sum_probs=98.7
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHH
Q 005055 515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (716)
Q Consensus 515 ~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~---k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k 591 (716)
.+...|..++..++.++..++...+...+.+ +.+++.+..++..++.+..++..|+.+....+.+++.+...++...
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444444444555555555544444444443 4666666666777777777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q 005055 592 NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEW-----------KRKYGVAVRE 660 (716)
Q Consensus 592 ~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w-----------~~kY~~~~~~ 660 (716)
.+++...+...++-... +++...+...+.....+|.+.+++.++++..+.++++. +.++..+- +
T Consensus 1090 ~~~~~l~k~i~eL~~~i----~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~-~ 1164 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARI----KELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQ-K 1164 (1930)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-H
Confidence 66666666655543332 22333333333334444444555555555555555544 22333333 5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 005055 661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (716)
Q Consensus 661 ~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~ 696 (716)
.+..++.+....+..++.+..+=..-.+++..++.+
T Consensus 1165 l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~ 1200 (1930)
T KOG0161|consen 1165 LRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQ 1200 (1930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666655555666555544
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.58 E-value=0.28 Score=57.67 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 405 LARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKL 448 (716)
Q Consensus 405 ~~~~~~~~~L~~~l~~~~e~~~~~n~~~s~~~C~~~l~~le~~l 448 (716)
.....++++|. .+...|..|...+..---.....++..+++.+
T Consensus 165 ~a~~~le~~l~-~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~ 207 (569)
T PRK04778 165 PALDELEKQLE-NLEEEFSQFVELTESGDYVEAREILDQLEEEL 207 (569)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44455555554 35566666655443222223344444433333
No 37
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.58 E-value=9.9e-05 Score=71.44 Aligned_cols=55 Identities=31% Similarity=0.386 Sum_probs=38.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..|+++|.++.|||+|+|.|+|.. ...+++.. .+|++ |.|.. + + ..++|+||+|+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~-g~T~~-~~~~~-~------~--~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIP-GETKV-WQYIT-L------M--KRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCC-CeeEe-EEEEE-c------C--CCEEEEECcCC
Confidence 457899999999999999999874 34555543 34554 33421 1 1 13789999995
No 38
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.26 Score=59.18 Aligned_cols=137 Identities=19% Similarity=0.259 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHH-------------------HHHHHHHH----HHHHHHHHHHHHH
Q 005055 556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK-------------------NEISDWKR----KYDQVLTKQKAME 612 (716)
Q Consensus 556 k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k-------------------~e~~e~~r----~y~~~i~~~k~~~ 612 (716)
+.++++...+.+...-++.++-++...+.++|-.++ .|...|-| +|...|++.+...
T Consensus 334 ~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e 413 (1200)
T KOG0964|consen 334 KDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQE 413 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 445555555555555555555555555555554444 46777765 4666699999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHH-HHHHHhhHHHHhh
Q 005055 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV-------EEWKRKYGVAVREAKAA--LEKAA-IVQERTSKEMQQR 682 (716)
Q Consensus 613 ~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~-------~~w~~kY~~~~~~~Ka~--leq~~-~~~~~~~e~~q~~ 682 (716)
+.++..|+++++.+....+++.++...+...+..+ .+-+++|+.+....|.+ .|+++ ..-..+.++....
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888777777666555444 44577787777544432 23222 2334555666777
Q ss_pred HHHHHHHHHH
Q 005055 683 EDVLREEFSS 692 (716)
Q Consensus 683 e~~~~~~~~~ 692 (716)
++.|++-...
T Consensus 494 ~~~L~~~~~r 503 (1200)
T KOG0964|consen 494 EKNLRATMNR 503 (1200)
T ss_pred HHHHHHhccc
Confidence 7777776553
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.57 E-value=0.023 Score=65.12 Aligned_cols=198 Identities=19% Similarity=0.332 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005055 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLR 577 (716)
Q Consensus 501 ~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k---~lee~i~dlk~~~e~~~~~~~~l~~k~~~le 577 (716)
...++++.+.+++..++..+..+.++++.++++++..++....-.. .|...+++++.++..+..++..++-+..-|-
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778888888888888888888888888887765544422 3556666666666666666655555555555
Q ss_pred HHHHhhHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHH
Q 005055 578 EKSSSLSKTVDSLKNE-------ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR-------------STAAEARLAAAR 637 (716)
Q Consensus 578 ~~~~~~~~~le~~k~e-------~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r-------------~~~~eerl~~~~ 637 (716)
.+...+..+|..++++ ..++.-+.+.++.+.--.......+|.+++.+ -..+..-+.+++
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiR 255 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIR 255 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 5555555555554443 23333444444333333334444555555433 112222233333
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHhhHHHHhh
Q 005055 638 EQ----ALSAQEEVEEWKRKYGVAVREAK-------------------------------AALEKAAIVQERTSKEMQQR 682 (716)
Q Consensus 638 ~q----l~~ak~E~~~w~~kY~~~~~~~K-------------------------------a~leq~~~~~~~~~e~~q~~ 682 (716)
.| ....+.|++.| |+.-+.+++ +.||...+..++.+++.+-.
T Consensus 256 aqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~q 332 (546)
T KOG0977|consen 256 AQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQ 332 (546)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhh
Confidence 22 34455555555 444444444 23344445555556665555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005055 683 EDVLREEFSSTLAEKVLSY 701 (716)
Q Consensus 683 e~~~~~~~~~~~~~~~~~~ 701 (716)
.+.-+.-|-..|+.||..+
T Consensus 333 l~e~~r~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 333 LDEDQRSFEQALNDKDAEI 351 (546)
T ss_pred hhhhhhhhhhhhhhHHHHH
Confidence 5555666777777777654
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.54 E-value=0.12 Score=66.64 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+++|+|+.|+||||+|+.|.+.-
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccc
Confidence 588999999999999999988754
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.51 E-value=0.065 Score=68.12 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHH
Q 005055 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 691 (716)
Q Consensus 613 ~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~ 691 (716)
+.+..+|+.++.+...+++++.++...+...+.+..+++.+-+.+- ..+..++..+..++.-.+++...-+.+..++.
T Consensus 824 ~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~ 901 (1163)
T COG1196 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE-AEKEELEDELKELEEEKEELEEELRELESELA 901 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555554444 45555555555555555555555444444443
No 42
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.50 E-value=0.1 Score=53.13 Aligned_cols=118 Identities=21% Similarity=0.284 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLK 623 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~ 623 (716)
.|+..|.++- ++...+.......+..+......+...|.+.++--+++-++|+.. |...++-.+.|...++++.
T Consensus 48 e~Ek~i~~~i---~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~ 124 (207)
T PF05010_consen 48 EYEKTIAQMI---EEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYE 124 (207)
T ss_pred HHHHHHHHHH---HHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555542 222223445556666666777778888888888888999999877 8888888888999999999
Q ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 624 SRSTAAEARLAAA----REQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (716)
Q Consensus 624 ~r~~~~eerl~~~----~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq 667 (716)
.++...+.|+.++ +++|..|..|++.-+++|+.=+..-+|.|-+
T Consensus 125 ~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 125 ERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998776 5668899999997777777666555555444
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.50 E-value=0.65 Score=59.42 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLK- 623 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~- 623 (716)
|-..-.+|+.+++.+..++.....+..++|..+....++++..+.+.++....|+.. +...+.....++.++...+
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433444778888889999999999999999999999999999999999999988887 5555555566666666554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHH
Q 005055 624 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA----KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVL 699 (716)
Q Consensus 624 ~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~----Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~ 699 (716)
.+...+++++++++.++...++|...|+.+...-..+. |+......+..+..++.......+.+.+++..+++=+.
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~ 757 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQ 757 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999988775554433 34445555666666666666666677777777766666
Q ss_pred HHHh
Q 005055 700 SYLS 703 (716)
Q Consensus 700 ~~~~ 703 (716)
.|-.
T Consensus 758 ~~~~ 761 (1201)
T PF12128_consen 758 QYNQ 761 (1201)
T ss_pred HHHH
Confidence 6653
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.50 E-value=0.031 Score=65.26 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~ 586 (716)
+.+...++.++..++.+++.+...+ ..+.+.+...+.+++++++.+..+...++.+...+++++..+..+
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i-------~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNI-------EEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444444444333333 333333444455555555555555555555555555555555444
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.50 E-value=0.067 Score=55.77 Aligned_cols=119 Identities=22% Similarity=0.287 Sum_probs=72.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHH
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYD---DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD 596 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k~le---e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e 596 (716)
...++.++..|...+..++....-.+.+|+ .-+..+.+..++.......|+.+....++++..+..+|..++....+
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333 33444467777777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005055 597 WKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 642 (716)
Q Consensus 597 ~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ 642 (716)
..++|++.-..... +...++..+.|+..++.++..++.++..
T Consensus 111 ~e~k~~E~~rkl~~----~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 111 AERKYEEVERKLKV----LEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 99999998554433 3333333333444444444444433333
No 46
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.50 E-value=0.15 Score=58.77 Aligned_cols=181 Identities=21% Similarity=0.220 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH----HH--------HHHHHHHHHHHHHHHHHhh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE---YLKRYDDAIN----DK--------KKLADDYTSRINNLQGENI 574 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~---~~k~lee~i~----dl--------k~~~e~~~~~~~~l~~k~~ 574 (716)
..+...+....+..+.++..++.+......+.+. +.......|. .. .+....+..+...++.+.+
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555665655555555444432221 1222222222 22 3344456666788999999
Q ss_pred hHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 575 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 654 (716)
Q Consensus 575 ~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY 654 (716)
.++.+++++...++.+..+..+.+..|++-..-.-++-.-+...++..++|+-.+|.++..++.|+..+.+...-= +-
T Consensus 200 ~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~--~~ 277 (629)
T KOG0963|consen 200 ELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA--KI 277 (629)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cC
Confidence 9999999999999999999999999999998877777788899999999999999999999999999988876511 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHH
Q 005055 655 GVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 693 (716)
Q Consensus 655 ~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~ 693 (716)
+. +......|.+.=..--+|..+.+.-+.+++.+..++
T Consensus 278 ~~-i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~ 315 (629)
T KOG0963|consen 278 DD-IDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH 315 (629)
T ss_pred Cc-hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222233322222345556666666666555444
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.48 E-value=0.4 Score=56.44 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~a 643 (716)
...+.....+.+.+..+.++...++.|+..+...|.-. +.. ...+..+|..++.+...++++++........+
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~----~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel 381 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELES----VRQLEKQLESLEKQYDEITERIAEQEIAYSEL 381 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 44445555555555555555555555555555555421 111 12244444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 005055 644 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 690 (716)
Q Consensus 644 k~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~ 690 (716)
+.+..++..+...+- +.+..+...+...++-..++..+-+.++..+
T Consensus 382 ~e~leel~e~leeie-~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 382 QEELEEILKQLEEIE-KEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 4444444555555554444444444444433
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.064 Score=68.19 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+-+|+||.|||||-++..|.
T Consensus 26 ~t~IvGPNGSGKSNI~DAi~ 45 (1163)
T COG1196 26 FTAIVGPNGSGKSNIVDAIR 45 (1163)
T ss_pred CeEEECCCCCchHHHHHHHH
Confidence 67899999999999999974
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.44 E-value=0.25 Score=60.30 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRS 626 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~ 626 (716)
+-+..++++++....++..+..+.++.+.+++.+....+.-..|+.+.+...... .++.+......+++|..++.+.
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~ 374 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEV 374 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555566666666666666666666666666665555555544 3444444455566666666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005055 627 TAAEARLAAAREQA-LSAQEEVEEWKRKYGVAVREA 661 (716)
Q Consensus 627 ~~~eerl~~~~~ql-~~ak~E~~~w~~kY~~~~~~~ 661 (716)
..++.+++.+++++ .....+.++--.||..+-.+.
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 66666666666665 555555555555555555333
No 50
>PRK02224 chromosome segregation protein; Provisional
Probab=97.44 E-value=0.25 Score=61.03 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
+|..|+|+.|+|||+|+..|.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 577789999999999999954
No 51
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.42 E-value=0.00037 Score=65.88 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=40.2
Q ss_pred EeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 75 SVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 75 sV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+++|..++|||+|+|+|++....+ . +...++|...+.....+ + .+.+.++||+|++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-~-~~~~~~t~~~~~~~~~~-----~--~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-V-EDTPGVTRDRIYGEAEW-----G--GREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-e-cCCCCceeCceeEEEEE-----C--CeEEEEEECCCCCCc
Confidence 479999999999999999875222 2 23345666655544332 2 267899999998643
No 52
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.41 E-value=0.00097 Score=71.76 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=45.2
Q ss_pred HHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeC
Q 005055 59 EAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDS 135 (716)
Q Consensus 59 eAl~~L~~i---~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDT 135 (716)
+.+++|..+ +.+-..|.|+|..++|||+|+|.|+|... |.++. ..++|...-+... ..+| ..|.++||
T Consensus 23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~-f~s~t~~~~~~~~-----~~~G--~~l~VIDT 93 (313)
T TIGR00991 23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSA-FQSEGLRPMMVSR-----TRAG--FTLNIIDT 93 (313)
T ss_pred HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeEEEEEE-----EECC--eEEEEEEC
Confidence 344455433 44666789999999999999999999752 21221 1222222111111 1133 57899999
Q ss_pred CCCccc
Q 005055 136 EGIDAY 141 (716)
Q Consensus 136 EGl~~~ 141 (716)
+|+++.
T Consensus 94 PGL~d~ 99 (313)
T TIGR00991 94 PGLIEG 99 (313)
T ss_pred CCCCch
Confidence 999754
No 53
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=97.40 E-value=0.24 Score=60.37 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 005055 349 SVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKN 428 (716)
Q Consensus 349 ~~~e~e~~~a~~~A~~~Y~~~m~~~~p~~e~eL~~~H~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~l~~~~e~~~~~ 428 (716)
.+.+..|.+|+..|.+.|.+.+-.. . =...|+.-..+|+.+|...+-| ...+.|..+|++++.+.+..-++.
T Consensus 392 kFs~~~C~~~l~~A~~~Y~~~lP~~----Y--~~~~H~~~l~~A~~~~~~~arG--p~~~~~~~~L~~~C~~~W~~Grq~ 463 (895)
T PF10220_consen 392 KFSEHRCEKALPLAKEAYQENLPAH----Y--SSAEHENKLAQALRVFESHARG--PAVEKYLEKLQEECDAIWQSGRQL 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc----c--CHHHHHHHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999997654321 1 1367999999999999998887 456789999999888776655554
Q ss_pred HHHHH
Q 005055 429 VYMEA 433 (716)
Q Consensus 429 n~~~s 433 (716)
.+..|
T Consensus 464 CE~~S 468 (895)
T PF10220_consen 464 CEAVS 468 (895)
T ss_pred hhhhc
Confidence 44333
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.40 E-value=0.18 Score=57.12 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=2.2
Q ss_pred HHHhhH
Q 005055 672 QERTSK 677 (716)
Q Consensus 672 ~~~~~e 677 (716)
++++++
T Consensus 245 L~~~I~ 250 (428)
T PRK11637 245 LRDSIA 250 (428)
T ss_pred HHHHHH
Confidence 333333
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.38 E-value=0.036 Score=53.30 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 662 (716)
Q Consensus 613 ~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~K 662 (716)
+.....+.++..++..++.+...++++......+...|-+||+.+-.+-+
T Consensus 90 e~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 90 EEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555556666666777777777777777888888888888887774433
No 56
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.87 Score=58.85 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005055 549 DDAINDKKKLADDYTS 564 (716)
Q Consensus 549 ee~i~dlk~~~e~~~~ 564 (716)
...+.+++++++++..
T Consensus 798 ~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 798 QMELKDVERKIAQQAA 813 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.33 E-value=0.1 Score=54.15 Aligned_cols=139 Identities=18% Similarity=0.275 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE--ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e--~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~ 624 (716)
+.-..+.+++..++++..+++.++....+++++.......+.+.+.+ ...+.+..+. -+.....+..+|+++..
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~----ak~r~~~le~el~~l~~ 117 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI----AKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34445555667777788888888888888888888777777555443 3333333333 23334556666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 005055 625 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVLSYLSR 704 (716)
Q Consensus 625 r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~~~~~~ 704 (716)
+...++..+.++.+.+...+.++. ..+.+++-+++--++-......+. +++.+.+..+-.+...|
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~-----------e~~~~~e~e~~~i~e~~~~~~~~~----~~L~~~l~~ell~~yer 182 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLA-----------EAEARLEEEVAEIREEGQELSSKR----EELKEKLDPELLSEYER 182 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCHHHHHHHHH
Confidence 666666666666666666666666 566666666665555444444433 34444444444443333
No 58
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.33 E-value=0.00034 Score=67.64 Aligned_cols=55 Identities=33% Similarity=0.389 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..|+|+|.+++|||+|+|.|++.. .+.++++ +.|.--|.|.. + + ..+.|+||+|+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~-~~~~~~~--~~~t~~~~~~~-~------~--~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKL-KLKVGNV--PGTTTSQQEVK-L------D--NKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccc-cccccCC--CCcccceEEEE-e------c--CCEEEEECCCC
Confidence 457899999999999999999864 3455544 33333366642 1 1 24889999996
No 59
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.32 E-value=0.15 Score=51.55 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhH
Q 005055 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (716)
Q Consensus 508 ~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~l 587 (716)
....+...++.+++.+..+...|+..+...++-. ..|++.=++|=..+.....++..|..+.....+++..+...+
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL----~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKAL----QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777665544332 345555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 005055 588 DSLKNEISDWKRKYD---QVLT-KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE----EVEEWKRKYGVAVR 659 (716)
Q Consensus 588 e~~k~e~~e~~r~y~---~~i~-~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~----E~~~w~~kY~~~~~ 659 (716)
.....++...+...+ .++. ......+.++.++..++.++...+.+++.|+.+++.+.. ++.-+++|+..+..
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQE 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 655555544444333 3333 234557899999999999999999999999999887654 44555666666663
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005055 660 EAKAALEKAAIVQERTS 676 (716)
Q Consensus 660 ~~Ka~leq~~~~~~~~~ 676 (716)
.-..+..+|..+...+
T Consensus 172 -~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 172 -EVKSLQEEIQRLNQKL 187 (194)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 2333334444444333
No 60
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.31 E-value=0.00066 Score=68.23 Aligned_cols=59 Identities=32% Similarity=0.441 Sum_probs=40.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+.++..|+|+|+.++|||+|+|.|++.. |.+. +|..+.+.++. + ++ ...+.++||.|+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~-----~----~~--~~~~~i~Dt~G~~ 100 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLR-----L----PD--GREVLLTDTVGFI 100 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEE-----e----cC--CceEEEeCCCccc
Confidence 4678899999999999999999999864 3222 23333332222 1 11 1368899999984
No 61
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.30 E-value=0.00038 Score=74.14 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=45.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccC-------CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST-------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~-------~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|.|+|..++|||+|+|.|++.. |..... ..++|.++-.....+. .+|..+.+.++||+|+++
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~--~~~~~~~~~~~~~~~~~T~~i~~~~~~i~---~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK--LIPSDYPPDPAEEHIDKTVEIKSSKAEIE---ENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CccccCCCCccccccCCceEEEEEEEEEE---ECCEEEEEEEEecCCccc
Confidence 58899999999999999999875 322211 2356767766554442 246567899999999974
No 62
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.29 E-value=0.037 Score=56.27 Aligned_cols=106 Identities=16% Similarity=0.285 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLR---EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 623 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le---~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~ 623 (716)
++.+|+..++++.+.+..+...++..+.+|. .++..+.++|..++.+-..+..+|..+-.+.....+.+...|-+.+
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444332 3444445555555555555555555555444444555555555555
Q ss_pred hh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 624 SR----STAAEARLAAAREQALSAQEEVEEWKR 652 (716)
Q Consensus 624 ~r----~~~~eerl~~~~~ql~~ak~E~~~w~~ 652 (716)
.+ .--+|-++.++.++++....+..+|..
T Consensus 139 Qk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 139 QKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 456777888888888877777776654
No 63
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.27 E-value=0.15 Score=56.76 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=113.1
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHH
Q 005055 518 LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 597 (716)
Q Consensus 518 ~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~ 597 (716)
.++..++..--.|++++++++-. ...+.-+=+.|+.|++.+|++...+-....+...++-.++.|.+-|..++++..|-
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k-~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEs 409 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMK-ITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQES 409 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666665533 33445678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 005055 598 KRKYDQVLTKQKAMEDQVC----SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-IVQ 672 (716)
Q Consensus 598 ~r~y~~~i~~~k~~~~~~~----~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~-~~~ 672 (716)
+..=+.+.-+.|+.+..|. .-+++++.|-... .+|.++.+.|-...+|+++.. ..|-.||++. +..
T Consensus 410 r~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv-sqclEmdk~LskKeeeverLQ--------~lkgelEkat~SAL 480 (527)
T PF15066_consen 410 RNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV-SQCLEMDKTLSKKEEEVERLQ--------QLKGELEKATTSAL 480 (527)
T ss_pred HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhhhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 9888888777777665553 2344444443222 367777777777777777433 3344455544 444
Q ss_pred HHhhHHHHhhHH---HHHHHHHHH
Q 005055 673 ERTSKEMQQRED---VLREEFSST 693 (716)
Q Consensus 673 ~~~~e~~q~~e~---~~~~~~~~~ 693 (716)
..|-++...||- .|++||..+
T Consensus 481 dlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444 355666554
No 64
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.24 E-value=0.0013 Score=63.43 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=40.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|.|+|..++|||+|+|+|.+.. |.+++. ...|+++-.+.... ..+.+.++||+|..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~--~~~~~~-~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK--PEVAPY-PFTTKSLFVGHFDY-------KYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC--CccCCC-CCcccceeEEEEcc-------CceEEEEEECCCcC
Confidence 47899999999999999999876 443321 12355655444321 23679999999984
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.22 E-value=0.62 Score=53.71 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005055 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (716)
Q Consensus 614 ~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E 646 (716)
.++.++..|+..+..+++++.+.+.+....+.|
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444444433
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.21 E-value=1.3 Score=57.44 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK----AMEDQVCSEIEVL 622 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k----~~~~~~~~~i~~l 622 (716)
+..+-|.+|+.+++.....+..|+.....+..+++.....+..++.+...|++||++++..++ ..-.++.+.|..|
T Consensus 1240 ~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L 1319 (1822)
T KOG4674|consen 1240 ANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL 1319 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 566778888999999999999999999999999999999999999999999999999977632 2223444444444
Q ss_pred Hhh
Q 005055 623 KSR 625 (716)
Q Consensus 623 ~~r 625 (716)
+..
T Consensus 1320 k~e 1322 (1822)
T KOG4674|consen 1320 KEE 1322 (1822)
T ss_pred HHH
Confidence 443
No 67
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.21 E-value=0.0007 Score=65.01 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=44.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|+|+|+.++|||+|+|+|.+...-|. .....|.|+..+...++. .++..+.+.++||.|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPV--DTDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEe--CCCCEEEEEEEECCCH
Confidence 78999999999999999986533352 334567888776554432 2456689999999994
No 68
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.21 E-value=0.0013 Score=62.73 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
||+|+|.+++|||+|+|+|.|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~ 24 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE 24 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc
Confidence 79999999999999999999864
No 69
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.20 E-value=0.0014 Score=63.17 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|..++|||+|+|.|.|... .++. +....+.|.-.+ ++ ...+.|+||+|+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~---------~~-~~~~~l~DtpG~~ 59 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRV---------DD-GRSFVVADIPGLI 59 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEc---------CC-CCeEEEEecCccc
Confidence 78999999999999999998652 2221 111223344322 11 1368899999984
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=97.20 E-value=0.2 Score=61.86 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=13.2
Q ss_pred HHHHHHHhhHHHHhhHHHHHHH
Q 005055 668 AAIVQERTSKEMQQREDVLREE 689 (716)
Q Consensus 668 ~~~~~~~~~e~~q~~e~~~~~~ 689 (716)
.+..|+..+++.+.+-+.++.+
T Consensus 406 ~~~~~e~~l~~l~~~~~~l~~~ 427 (880)
T PRK02224 406 DLGNAEDFLEELREERDELRER 427 (880)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666544
No 71
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.19 E-value=0.065 Score=59.91 Aligned_cols=127 Identities=9% Similarity=0.092 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005055 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAE 630 (716)
Q Consensus 554 dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~e 630 (716)
.+....+.+.+++..++.+...++.++..+..+++.++.+....++.|... +++.- ..+.+..+.+.....++
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~----is~~~~~~~~~~~~~~~ 209 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGL----VSRLELLELERERAEAQ 209 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555544443 22100 00112223333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHH
Q 005055 631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED 684 (716)
Q Consensus 631 erl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~ 684 (716)
..+.+++.++..++.+...-+..+..+.+.........+...+.-+.+++.+-+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLN 263 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444444444444444334444444444443333
No 72
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.19 E-value=0.0006 Score=72.10 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=46.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+.+.=|+|+|++..|||+|-|++.|+. -|++...+..+|.-|---+. . | +..++|+||+|+-+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~t-----s--~-eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIIT-----S--G-ETQLVFYDTPGLVSK 133 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEe-----c--C-ceEEEEecCCccccc
Confidence 467779999999999999999999985 47777666555544332211 1 2 367999999998543
No 73
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.17 E-value=0.00059 Score=67.61 Aligned_cols=55 Identities=35% Similarity=0.334 Sum_probs=40.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..|+|+|.+++|||+|+|.|+|.. .+.+++. -.+|++ |-|.. + + ..+.|+||+|+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~-pg~T~~-~~~~~-~------~--~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR-ACNVGAT-PGVTKS-MQEVH-L------D--KKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc-cceecCC-CCeEcc-eEEEE-e------C--CCEEEEECcCC
Confidence 468999999999999999999874 4666654 346776 44532 1 1 24789999995
No 74
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.17 E-value=0.00076 Score=62.82 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=40.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|+|+|..++|||+|+|+|++.. |..... ...|..+|...... ++..+.+.++||+|.
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK--FITEYK-PGTTRNYVTTVIEE-----DGKTYKFNLLDTAGQ 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CcCcCC-CCceeeeeEEEEEE-----CCEEEEEEEEECCCc
Confidence 7899999999999999999876 544432 34455555543322 233467899999995
No 75
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.16 E-value=0.32 Score=49.48 Aligned_cols=143 Identities=13% Similarity=0.227 Sum_probs=78.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005055 545 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (716)
Q Consensus 545 ~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~ 624 (716)
.+++.+.|.++++.-+........+..+.. .+.+-|..++.+..++++.....-.++ ..-..+.+++..++.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~-------~L~epL~~a~~e~~eL~k~L~~y~kdK-~~L~~~k~rl~~~ek 100 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENK-------RLSEPLKKAEEEVEELRKQLKNYEKDK-QSLQNLKARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345555555555555554444444444444 444455555555555555544432222 112234445555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHH
Q 005055 625 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (716)
Q Consensus 625 r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~ 695 (716)
.+..++-....++........|-.+|.+++..++.++.-..+-.+-..++=+...+..-+.-.+++...|+
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566666668888888888887776666666666666555555555555555554443
No 76
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.64 Score=56.27 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=36.0
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl 633 (716)
..|+.++..++..++++..+|.+.+..++.++.....+ +.+....-..++.++++.+.+......++
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555555566666666666666666666655555555 33333333445555555555544444444
No 77
>PRK03918 chromosome segregation protein; Provisional
Probab=97.15 E-value=0.4 Score=59.18 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.0
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
+|.+|+|+.|+|||+|+..|.
T Consensus 24 g~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 24 GINLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 356799999999999999863
No 78
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.15 E-value=0.0015 Score=60.74 Aligned_cols=59 Identities=32% Similarity=0.428 Sum_probs=36.3
Q ss_pred eeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 76 V~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
|+|+.++|||+|+|.|++.. +.......++|...-.....+ +....+.++||+|+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE--VAIVSPVPGTTTDPVEYVWEL------GPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc--ccccCCCCCcEECCeEEEEEe------cCCCcEEEEECCCCCccc
Confidence 68999999999999999874 221122223333332222111 113578999999986544
No 79
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.13 E-value=0.00029 Score=68.92 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccc-------cCCCcccceEEeeccccccccCCCCcee
Q 005055 58 PEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-------STHRPCTKGLWLWSAPLKRTALDGTEYN 129 (716)
Q Consensus 58 ~eAl~~L~~-i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g-------~~~~~~TkGIWmw~~p~~~~~~~g~~~~ 129 (716)
.+.++.|.. +.+ -++.++|+.+.|||+|+|.|++.. -+.++ .+...+|..-++.- |+|
T Consensus 23 ~~g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~-~~~t~~is~~~~rGkHTTt~~~l~~l-------~~g---- 88 (161)
T PF03193_consen 23 GEGIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEA-KQKTGEISEKTGRGKHTTTHRELFPL-------PDG---- 88 (161)
T ss_dssp TTTHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEE-------TTS----
T ss_pred CcCHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhc-chhhhhhhcccCCCcccCCCeeEEec-------CCC----
Confidence 344455543 344 467889999999999999999863 12222 22223334443321 222
Q ss_pred EEEEeCCCCcccc
Q 005055 130 LLLLDSEGIDAYD 142 (716)
Q Consensus 130 vvlLDTEGl~~~~ 142 (716)
.+++||+|+.+++
T Consensus 89 ~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 89 GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEECSHHHHT--
T ss_pred cEEEECCCCCccc
Confidence 5789999986443
No 80
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.09 E-value=0.0017 Score=61.22 Aligned_cols=60 Identities=27% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
-|+++|+.++|||+|+|+|.+.. +..-....++|.-+. ...+. .+ ...+.++||+|++..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~--~~~~~---~~--~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVI--EESID---IG--GIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceE--EEEEE---eC--CEEEEEEECCCcCCC
Confidence 47899999999999999999875 222111222232111 11111 11 246889999998543
No 81
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.08 E-value=0.12 Score=59.62 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------------hhHHhHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLREKSS---------------SLSKTVDSLKNEISDWKRKYDQV---LTKQKAM 611 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~---------------~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~ 611 (716)
+.+.++..+..+...++...+.+...++.+.. .+..++..++.+..++..+|-.- +.+.++.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 44444455555555555555555555444332 44455666666666666666544 3333333
Q ss_pred HHHHHHHHHH---------------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 005055 612 EDQVCSEIEV---------------------LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR--EAKAALEKA 668 (716)
Q Consensus 612 ~~~~~~~i~~---------------------l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~--~~Ka~leq~ 668 (716)
.+.++.++.. +......++.++++++.++...+.+.++++.++..+-. ..=..|+++
T Consensus 284 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re 363 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRD 363 (498)
T ss_pred HHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3333333322 33344455555555555555555556655555544331 111244455
Q ss_pred HHHHHHhhHHHHhhHHH
Q 005055 669 AIVQERTSKEMQQREDV 685 (716)
Q Consensus 669 ~~~~~~~~e~~q~~e~~ 685 (716)
....+...+.+..|-++
T Consensus 364 ~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 364 YEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444443
No 82
>PRK15494 era GTPase Era; Provisional
Probab=97.07 E-value=0.00091 Score=73.35 Aligned_cols=58 Identities=24% Similarity=0.450 Sum_probs=40.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCcccc-ccCCC---cccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~-g~~~~---~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|+|+|..++|||+|+|+|+|.. |.. .+..+ ....|++.|. + ..++|+||+|+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k--~~ivs~k~~tTr~~~~~~~~~~---------~--~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEK--LSIVTPKVQTTRSIITGIITLK---------D--TQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCc--eeeccCCCCCccCcEEEEEEeC---------C--eEEEEEECCCcC
Confidence 355679999999999999999999876 432 22221 1223555541 2 468999999974
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.05 E-value=0.0024 Score=64.55 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+|+|..++|||.|+|++++.. |.-. ..| |.|.-.....+ ..+|..+.+.++||.|+..
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~--f~~~--~~p-t~~~~~~~~~i---~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQE--FPEE--YIP-TEHRRLYRPAV---VLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCC--CCcc--cCC-ccccccceeEE---EECCEEEEEEEEeCCCccc
Confidence 7899999999999999999865 5322 122 22322211111 1245667899999999854
No 84
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.04 E-value=1.2 Score=57.10 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.6
Q ss_pred EEeeCCCCCChhHHHHHhh
Q 005055 74 VSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~ll 92 (716)
|-|+|-.|+||||||..|.
T Consensus 20 t~i~GTNG~GKTTlLRlip 38 (1201)
T PF12128_consen 20 THICGTNGVGKTTLLRLIP 38 (1201)
T ss_pred eeeecCCCCcHHHHHHHHH
Confidence 4578999999999999975
No 85
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.04 E-value=0.0022 Score=62.62 Aligned_cols=98 Identities=20% Similarity=0.313 Sum_probs=50.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccc-------cCC-CcccceEEeecccccc--ccCCCCceeEEEEeCCCCccccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVA-------STH-RPCTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g-------~~~-~~~TkGIWmw~~p~~~--~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
|+++|..++|||+|+|+|++....|.-+ ++. ...+.|+=........ ...++..+.+.|+||.|...+.
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~- 81 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS- 81 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH-
Confidence 7999999999999999999753222110 000 0012233222111100 0003456889999999975321
Q ss_pred CCcchhHHHHHhhhccceEEEccCCCCchHhhh
Q 005055 144 TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (716)
Q Consensus 144 ~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (716)
..+.-++...=.-++||.....+...++.
T Consensus 82 ----~~~~~~~~~ad~~i~v~D~~~~~~~~~~~ 110 (179)
T cd01890 82 ----YEVSRSLAACEGALLLVDATQGVEAQTLA 110 (179)
T ss_pred ----HHHHHHHHhcCeEEEEEECCCCccHhhHH
Confidence 22222222212235677766554444443
No 86
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.04 E-value=1.1 Score=52.65 Aligned_cols=121 Identities=16% Similarity=0.252 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV---DSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEV 621 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~l---e~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~ 621 (716)
.++++..+...++++..++..|..+...+...+......+ ...++++....++|+.. +.+....-..+...+.+
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~ 383 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEE 383 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 3344444444555555555555555555555554444333 23344455555566555 44444444555556666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005055 622 LKSRSTAAEARLAAAREQALSAQE---EVEEWKRKYGVAVREAKAALEKA 668 (716)
Q Consensus 622 l~~r~~~~eerl~~~~~ql~~ak~---E~~~w~~kY~~~~~~~Ka~leq~ 668 (716)
+..++..+++...++.+.++..+. ++.+-..+|+..++++|-.+++.
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666666555555555444332 33344446666666666666554
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.03 E-value=0.051 Score=64.85 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 005055 522 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (716)
Q Consensus 522 s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y 601 (716)
.+|.+++.|+-.+...-+. +..|...|..+..---.++.++.+++.++..|+.++..|......=|+.+..++|++
T Consensus 422 rLE~dvkkLraeLq~~Rq~----E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQS----EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhhhh----HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444333332 333444555443333456666667777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005055 602 DQVLTKQKAMEDQVCSEIEVLKS 624 (716)
Q Consensus 602 ~~~i~~~k~~~~~~~~~i~~l~~ 624 (716)
.+.-. ....+++++.+-+.
T Consensus 498 ~eE~~----~R~~lEkQL~eErk 516 (697)
T PF09726_consen 498 AEERR----QRASLEKQLQEERK 516 (697)
T ss_pred HHHHH----HHHHHHHHHHHHHH
Confidence 55322 23344444444443
No 88
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.01 E-value=0.0011 Score=63.04 Aligned_cols=55 Identities=27% Similarity=0.359 Sum_probs=36.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|.++|..++|||+|+|.|+|... ..++... .+|+... | .++ ++ .+.++||+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~-~~~~~~~-~-~~~-----~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATP-GKTKHFQ-T-IFL-----TP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCC-CcccceE-E-EEe-----CC---CEEEEECCCcC
Confidence 578899999999999999998752 2333322 2344432 2 111 11 47899999974
No 89
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.01 E-value=0.001 Score=74.23 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=41.6
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
++=|+|+|.+.+|||||||.|.+... .+++ |+.....|++.+. + ...++|+||+|+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~--------~--~~~i~~vDtPGi~ 218 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVD--------D--ERSFVVADIPGLI 218 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeC--------C--CcEEEEEeCCCcc
Confidence 55699999999999999999998652 3332 3334467877652 1 1358999999984
No 90
>PRK09039 hypothetical protein; Validated
Probab=97.01 E-value=0.097 Score=57.60 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 545 LKRYDDAINDKKKLADDYTSRINNLQGENI-------SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS 617 (716)
Q Consensus 545 ~k~lee~i~dlk~~~e~~~~~~~~l~~k~~-------~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~ 617 (716)
..+++..|.+++..++....+.+.|+.... .++.+...+..+|...+.+.++-.+.... |+.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~-----------L~~ 144 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVEL-----------LNQ 144 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----------HHH
Confidence 456777777777777777777766666433 55666666666666666655555554443 555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 005055 618 EIEVLKSRSTAAEARLAAAREQA 640 (716)
Q Consensus 618 ~i~~l~~r~~~~eerl~~~~~ql 640 (716)
+|+.|+.++..+++.|.+++++.
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655555555555555555554
No 91
>PRK09039 hypothetical protein; Validated
Probab=97.00 E-value=0.32 Score=53.54 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 608 QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 608 ~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
.+....+...++.-|++.+..++++|++++.+++.++..-.
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443
No 92
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.98 E-value=0.002 Score=64.93 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~ 95 (716)
|+|+|..++|||+|+|.|+|..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999853
No 93
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.96 E-value=0.004 Score=56.58 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=50.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCc-cccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHH
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSG-FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF 152 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~g-F~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IF 152 (716)
|.|+|+.++|||+|+++|++.... -.......+.|-++...... +....+.+.|+.|...... ....|
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~g~~~~~~----~~~~~ 70 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-------GDRQSLQFWDFGGQEEFYS----QHQFF 70 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-------TEEEEEEEEEESSSHCHHC----TSHHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-------CCceEEEEEecCccceecc----cccch
Confidence 679999999999999999987622 11333444455554444322 2234588899998632211 11122
Q ss_pred HHhhhccceEEEccCCCCchHhhhhh
Q 005055 153 SLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 153 aLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
+.---.=++||++. +..+++++
T Consensus 71 -~~~~d~~ilv~D~s---~~~s~~~~ 92 (119)
T PF08477_consen 71 -LKKADAVILVYDLS---DPESLEYL 92 (119)
T ss_dssp -HHHSCEEEEEEECC---GHHHHHHH
T ss_pred -hhcCcEEEEEEcCC---ChHHHHHH
Confidence 33333446778665 44556554
No 94
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.96 E-value=0.0014 Score=65.03 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=39.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+.-|+|+|..++|||+|+|.|++...-..+.++ -.+|..+=.+.. ...+.|+||+|++
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~----------~~~l~l~DtpG~~ 81 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFFEV----------NDKLRLVDLPGYG 81 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEEec----------CCeEEEeCCCCCC
Confidence 4455899999999999999999986411122222 245665533321 1468999999975
No 95
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.96 E-value=0.66 Score=55.44 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E 646 (716)
...+.+..-.+.++..+.+.+....++-.++.++|.+...+ +...+.-....++....+..++..++.+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ-----------le~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ-----------LESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666666666666666666654332 1111112225566666666666667777
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005055 647 VEEWKRKYGVAV------REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVLSY 701 (716)
Q Consensus 647 ~~~w~~kY~~~~------~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~~~ 701 (716)
...|..||+... ....+.+..+++...+.+.-.-......-+++...+.+||...
T Consensus 482 ~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 482 AGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777776543 1333444444444444444445555666667777777776543
No 96
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=1.4 Score=52.37 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLK 623 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~---~~~~~i~~l~ 623 (716)
+.++++.++.++..+...+..+++.+.+.+++..+.+....++.-........-=.-+-+..+..+. .|+.++....
T Consensus 789 ~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~ 868 (970)
T KOG0946|consen 789 GDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN 868 (970)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh
Confidence 3445555554445555555666666666666666655554444433333322211111111111111 1222233333
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Q 005055 624 SRSTAAEARLAAAREQALSA---------QE-----EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE 689 (716)
Q Consensus 624 ~r~~~~eerl~~~~~ql~~a---------k~-----E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~ 689 (716)
+-...+-|.++++++|+++- |. |+..-+++-+.++ =-.+..++.|..|++++++...+-.+...|
T Consensus 869 nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~-v~~~~~~~~i~alk~~l~dL~q~~eeie~e 947 (970)
T KOG0946|consen 869 NLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELL-VLLADQKEKIQALKEALEDLNQPVEEIEDE 947 (970)
T ss_pred hHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHH-HHHhhHHHHHHHHHHHHHHhCCChhhHHhh
Confidence 33344444555555444332 22 3333444444444 356888999999999999999887666555
Q ss_pred HHHHHHH
Q 005055 690 FSSTLAE 696 (716)
Q Consensus 690 ~~~~~~~ 696 (716)
.-+...+
T Consensus 948 ~~s~~~e 954 (970)
T KOG0946|consen 948 KVSIIGE 954 (970)
T ss_pred hhcccch
Confidence 5444433
No 97
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.95 E-value=0.054 Score=57.66 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=84.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 543 EYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVL 622 (716)
Q Consensus 543 ~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l 622 (716)
.-.+.+|+.|.+++++-.++..+...+..+|.+.+++.++|..+|..+-.-.+++.-.|+..+..+..+-+.=+..|..|
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~L 206 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKL 206 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHH
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHH
Q 005055 623 KSRSTAAEARLAAA 636 (716)
Q Consensus 623 ~~r~~~~eerl~~~ 636 (716)
++|+.++--.+..+
T Consensus 207 EsKVqDLm~EirnL 220 (401)
T PF06785_consen 207 ESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988865554443
No 98
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=1.8 Score=53.47 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q 005055 526 NMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 605 (716)
Q Consensus 526 e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i 605 (716)
++......++.++....-.++.+++....++.+.+-+.+++..++.+..-...+......+++-++.|...+..+-+..+
T Consensus 441 ~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~ 520 (1293)
T KOG0996|consen 441 EIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL 520 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444455555555555555555555555555555555555555555555555555555544443
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 606 TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG 655 (716)
Q Consensus 606 ~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~ 655 (716)
.+ ..++++++..+.+.+..-.-.+...+.++..|+.+-.
T Consensus 521 ~~-----------~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 521 KK-----------VEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33 3333333334443443334444444444444444433
No 99
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.93 E-value=0.0016 Score=61.91 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=37.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
|+|+|..++|||+|+|.|++... .+..++...+|.-++.+..+ ..+.++||+|++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~----------~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVN----------DKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEcc----------CeEEEecCCCcccc
Confidence 78999999999999999995431 11112223345555554321 16889999998654
No 100
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.90 E-value=0.12 Score=48.91 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Q 005055 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLS 584 (716)
Q Consensus 508 ~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dl---k~~~e~~~~~~~~l~~k~~~le~~~~~~~ 584 (716)
.+..+...+.......+..+..++.-++.......+.++.|+..+... -+.+..++.+.+.++.+...+.....+..
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777777777777544433 22333333333333333333333333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 642 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ 642 (716)
..|+ +.+.. +..+ +..|..+|.+++.|+..+.++-.=|..|++.
T Consensus 87 ~~l~-------~~e~s----w~~q---k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 87 AELE-------ESEAS----WEEQ---KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHH-------HHHHh----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 22222 2222 5668888888888888888888888888764
No 101
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.89 E-value=0.0036 Score=60.07 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=38.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+|+|+|..++|||+|+|+|.+.. |... ....+|..+.....+.. .+....+.++||+|.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~--~~~~-~~~~~t~~~~~~~~~~~----~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN--VAAG-EAGGITQHIGAFEVPAE----VLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc--cccc-cCCCeEEeeccEEEecc----cCCcceEEEEeCCCcH
Confidence 58999999999999999999764 4332 11234444433222221 0123678899999964
No 102
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.89 E-value=0.82 Score=48.78 Aligned_cols=177 Identities=19% Similarity=0.299 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---hhH
Q 005055 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS---SLS 584 (716)
Q Consensus 508 ~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~---~~~ 584 (716)
.+..+...++.+.+.++.++.-++.+....-.. .+-.=+.|.+++.+.+++-++...|...+..+-+... ..+
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~----rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~ 106 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREE----RDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGG 106 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 334444444555555555544444444332222 1122345555677777777777777777766666665 556
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE------ARLAAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~e------erl~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
-.+++.+.++..+....+...-. ......+-..|++|+..+...+ +.+..+.++++..+.++.+...+-+.+.
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~-~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLT-PEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777766666666555111 1123344455555554433332 3344555555555555665555555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 005055 659 REAKAALEKAAIVQERTSKEMQQREDVLREEF 690 (716)
Q Consensus 659 ~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~ 690 (716)
+++..-=++-+..|++ .+++..+-|.+-++|
T Consensus 186 ~eaqe~he~m~k~~~~-~De~Rkeade~he~~ 216 (294)
T COG1340 186 NEAQEYHEEMIKLFEE-ADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5555555555555555 344444444444443
No 103
>PRK12289 GTPase RsgA; Reviewed
Probab=96.89 E-value=0.0017 Score=71.45 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=39.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCC------CcccceEEeeccccccccCCCCceeEEEEeCCCCccccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~------~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
+++|+|+.+.|||+|+|.|+|.. ...+|... +-+|+.+=++.- ++| .+|+||+|+..++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l------~~g----~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFEL------PNG----GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEEC------CCC----cEEEeCCCcccccc
Confidence 47899999999999999999763 23333211 114566644432 223 27899999865443
No 104
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.89 E-value=0.0012 Score=71.97 Aligned_cols=57 Identities=33% Similarity=0.491 Sum_probs=40.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE-EeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI-Wmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
.-|.|+|-+.+|||+|+|.|+|+.. -.+|+.. ..|+|+ |+=.. ..+.|+||+|+--.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~P-G~Tk~~q~i~~~-----------~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRP-GTTKGIQWIKLD-----------DGIYLLDTPGIIPP 190 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCC-ceecceEEEEcC-----------CCeEEecCCCcCCC
Confidence 3499999999999999999999864 3333322 467776 54211 24899999998533
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.88 E-value=1.1 Score=50.11 Aligned_cols=178 Identities=24% Similarity=0.272 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Q 005055 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584 (716)
Q Consensus 508 ~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k---~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~ 584 (716)
.++++++.+..++....++..-|.+++...+..+..... ..+..+..+.+.++++..++..|+.+. .++-..|.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La 118 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 446666666555555555555555555444433333222 222223333444444444444444443 44455555
Q ss_pred HhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNE----------------ISDWKRKYDQVLTKQKAMEDQVCSEIEVLK---SRSTAAEARLAAAREQALSAQE 645 (716)
Q Consensus 585 ~~le~~k~e----------------~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~---~r~~~~eerl~~~~~ql~~ak~ 645 (716)
++|.++..- .+.--.-|-..++.- ...+|..|+ ..+......+++-++++..+..
T Consensus 119 ~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~------~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~ 192 (420)
T COG4942 119 EQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA------RAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192 (420)
T ss_pred HHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555541 112222222222222 222222222 2244555556666666666666
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHH
Q 005055 646 EVEEWKRKYGVAVREA---KAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (716)
Q Consensus 646 E~~~w~~kY~~~~~~~---Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~ 694 (716)
|-.+.+++-+.++.+. .+.|+..++..++-+++....+..|+.++++.-
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6777777777776443 355667777788889999999999999998876
No 106
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.86 E-value=0.00097 Score=61.11 Aligned_cols=57 Identities=28% Similarity=0.424 Sum_probs=39.3
Q ss_pred eeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 76 V~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+|+.++|||+|+|.|.+.... +.....|. ++.+...+.. .+....+.++||+|.+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~----~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV----PEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC----Ccccccch-hheeeEEEEE---CCEEEEEEEEecCChHH
Confidence 6899999999999999987632 22223344 6666655432 12346799999999753
No 107
>PRK11058 GTPase HflX; Provisional
Probab=96.85 E-value=0.0034 Score=70.90 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=39.0
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCC--ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSS--GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~--gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
+..|+|+|.+++|||+|+|+|.|... .-..+.|..+.+..+-+|. + ..++|+||.|+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~---------~--~~~~l~DTaG~ 255 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD---------V--GETVLADTVGF 255 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC---------C--CeEEEEecCcc
Confidence 34689999999999999999998641 0112456666554443332 1 14678999997
No 108
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.85 E-value=0.0018 Score=61.80 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|+|++.. |.... +.|.|+-.-...+. -++..+.+.++||+|.
T Consensus 3 i~liG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT--FDNQY---QATIGIDFLSKTMY---LEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCccC---CCceeeeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999876 54321 22333311111110 1244567899999994
No 109
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.85 E-value=0.0018 Score=62.27 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=39.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
=|+|+|+.++|||+|+|+|++.. |...+ ..|.|+=.+...+. .++..+.+-++||.|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNE--FNLDS---KSTIGVEFATRSIQ---IDGKTIKAQIWDTAGQ 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence 37899999999999999999876 54322 23555533333222 1345577889999995
No 110
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.84 E-value=0.0013 Score=65.58 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCC-------ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSS-------GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~-------gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.|.++|..++|||+|+|.|++... +..+++. ..+|++...... +. .+.|+||+|+
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~-~gtT~~~~~~~~--------~~--~~~~~DtPG~ 190 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI-PGTTLDLIKIPL--------GN--GKKLYDTPGI 190 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC-CCeeeeeEEEec--------CC--CCEEEeCcCC
Confidence 588999999999999999998542 2233222 236666543211 11 3688999995
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.84 E-value=1.3 Score=57.50 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 626 STAAEARLAAAREQALSAQEEVEEWKRKY 654 (716)
Q Consensus 626 ~~~~eerl~~~~~ql~~ak~E~~~w~~kY 654 (716)
....+.++.+++.++..++.+.+.-..+|
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 112
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.83 E-value=0.00087 Score=64.96 Aligned_cols=35 Identities=40% Similarity=0.598 Sum_probs=26.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL 111 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI 111 (716)
|+|+|.+++|||+|+|.|+|.. -++.+.+ +||..+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~-ilp~~~~--~~T~~~ 35 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP-ILPSGVG--PCTAVP 35 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS--SSSSSS--STTSSE
T ss_pred CEEEcCCCCCHHHHHHHHHhcc-cCccccc--ccccce
Confidence 7899999999999999999974 3444433 677554
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.5 Score=50.46 Aligned_cols=42 Identities=26% Similarity=0.113 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 654 (716)
Q Consensus 613 ~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY 654 (716)
+...+-|+++++.+..++.++..+.+.-...++|+++-..+.
T Consensus 449 ~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~ 490 (581)
T KOG0995|consen 449 SNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKC 490 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666677777777776666666666544443
No 114
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.78 E-value=0.0033 Score=67.30 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=41.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+...|.|+|.+++|||+|+|.|.|... ..+++. -.+|+++ -|... + ..+.|+||+|+-..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~-~g~T~~~-~~~~~-------~--~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNR-PGVTKAQ-QWIKL-------G--KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCC-CCeEEEE-EEEEe-------C--CcEEEEECCCcCCC
Confidence 445799999999999999999998752 344432 2457774 33211 1 24789999999543
No 115
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.78 E-value=0.0022 Score=61.24 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=40.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |.. ....|.|+-.....+.. +|..+.+-++||.|.+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR--FVS---KYLPTIGIDYGVKKVSV---RNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceeEEEEEEEE---CCeEEEEEEEECCccH
Confidence 7899999999999999999876 532 12345555433222221 3556889999999963
No 116
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.77 E-value=0.0035 Score=59.72 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=47.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHHH
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFS 153 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IFa 153 (716)
|+++|+.++|||+|+|+|.+.. |. +...+.+...+.+.. ..++..+.+.++||.|.... ...+...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~--~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~g~~~~-----~~~~~~~ 68 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDE--FV--EDYEPTKADSYRKKV-----VLDGEDVQLNILDTAGQEDY-----AAIRDNY 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--Cc--cccCCcchhhEEEEE-----EECCEEEEEEEEECCChhhh-----hHHHHHH
Confidence 7899999999999999999765 32 122333433433322 12455678999999995322 2333333
Q ss_pred HhhhccceEEEcc
Q 005055 154 LAVLLSSMFIYNQ 166 (716)
Q Consensus 154 La~LLSS~~IyN~ 166 (716)
+...=.-+++|++
T Consensus 69 ~~~~~~~i~v~d~ 81 (164)
T cd04139 69 HRSGEGFLLVFSI 81 (164)
T ss_pred hhcCCEEEEEEEC
Confidence 4333334566654
No 117
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.76 E-value=0.0043 Score=66.53 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred eeeCHHHHHHhhc---cCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeE
Q 005055 54 FRMDPEAVAALQL---VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL 130 (716)
Q Consensus 54 l~v~~eAl~~L~~---i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 130 (716)
|..-.+|.+.|.. |+-..--|-|+|.+..|||+|++.|-+.. -.+.+= -=+||||.+..--. + ...+
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~Y-PFTTK~i~vGhfe~-----~--~~R~ 217 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPY-PFTTKGIHVGHFER-----G--YLRI 217 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCC-CccccceeEeeeec-----C--CceE
Confidence 4444556666654 44455567789999999999999999875 222221 01699999875321 1 1367
Q ss_pred EEEeCCCCcccccCCcc---hhHHHHHhhhccceEEEcc
Q 005055 131 LLLDSEGIDAYDQTGTY---STQIFSLAVLLSSMFIYNQ 166 (716)
Q Consensus 131 vlLDTEGl~~~~~~~~~---d~~IFaLa~LLSS~~IyN~ 166 (716)
=++||+|+-+-.-+.-| ...|.||.- |-++++|=.
T Consensus 218 QvIDTPGlLDRPl~ErN~IE~qAi~AL~h-l~~~IlF~~ 255 (346)
T COG1084 218 QVIDTPGLLDRPLEERNEIERQAILALRH-LAGVILFLF 255 (346)
T ss_pred EEecCCcccCCChHHhcHHHHHHHHHHHH-hcCeEEEEE
Confidence 78999999543333333 466888864 667777643
No 118
>PRK12288 GTPase RsgA; Reviewed
Probab=96.76 E-value=0.0013 Score=72.23 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=36.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCC-----cc-cceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----PC-TKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~-----~~-TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+++++|+.+.|||+|+|.|+|.. ...+|.-.. .+ |+..=+..- +.| .+|+||+|+-.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l------~~~----~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHF------PHG----GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEe------cCC----CEEEECCCCCcc
Confidence 46799999999999999999863 233333211 22 333332221 122 258999998543
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.76 E-value=0.61 Score=57.54 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.9
Q ss_pred ceeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHh
Q 005055 53 KFRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQL 91 (716)
Q Consensus 53 ~l~v~~eAl~~L~~i~-~pV~VVsV~G~~rtGKS~LlN~l 91 (716)
++.++.+-.++|..|. +-.+=|+||-..+|||=|-|-.|
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~l 108 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKIL 108 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHh
Confidence 5778888888888774 67788888888999999988765
No 120
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.76 E-value=0.0056 Score=68.37 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=54.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCcc---ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccC-Ccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT-GTY 147 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF---~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~-~~~ 147 (716)
-+|+|+|.+..|||+|.|+|.|+.... --|-|+.+ ..|.--|. | +.+.|+||-|++..+.+ -..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr-~y~~~~~~---------~--~~f~lIDTgGl~~~~~~~l~~ 71 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDR-IYGDAEWL---------G--REFILIDTGGLDDGDEDELQE 71 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCC-ccceeEEc---------C--ceEEEEECCCCCcCCchHHHH
Confidence 379999999999999999999986211 01223322 22333332 2 34789999999744322 111
Q ss_pred ---hhHHHHHhhhccceEEEccCCCCchHhhh
Q 005055 148 ---STQIFSLAVLLSSMFIYNQMGGIDESAID 176 (716)
Q Consensus 148 ---d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (716)
.....|+.--=--.||.+..-.|+..|-+
T Consensus 72 ~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ 103 (444)
T COG1160 72 LIREQALIAIEEADVILFVVDGREGITPADEE 103 (444)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 22233443322334566666667777654
No 121
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.74 E-value=0.0049 Score=60.19 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~ 95 (716)
|+|+|..++|||+|+|.|++..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~ 23 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVT 23 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999765
No 122
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.71 E-value=0.0027 Score=61.71 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=39.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
++.=|+|+|+.++|||+|+|++.+.. |.... +.|.|+=.+...+. .++..+.+.++||.|.
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 34558999999999999999999865 53322 22444322211111 1344578899999994
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.71 E-value=0.37 Score=46.41 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005055 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 554 dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl 633 (716)
++.....+...+++.|+.++..++.++..+..+|..+ +...++.-+.. ..-+.+...|.-|+..+..++.+|
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~-------k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA-------KEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444 33443332211 112357777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 005055 634 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR 682 (716)
Q Consensus 634 ~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~ 682 (716)
..+.+.+..+...+..--|+-.. |+.....+++=++++..+
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~--------le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKA--------LEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--------HHhhHHHHHHHHHHHHHH
Confidence 77777777776666644444333 444444444444444433
No 124
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.71 E-value=0.0014 Score=64.93 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeecccccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKR 120 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~ 120 (716)
+|+|+||.++|||||||.++|-- . |..-.||+-.+-|..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~----~-----P~~G~i~i~g~d~t~ 65 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE----T-----PASGEILINGVDHTA 65 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc----C-----CCCceEEEcCeecCc
Confidence 79999999999999999998743 2 445568887665543
No 125
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.69 E-value=0.0028 Score=61.09 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=38.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.=|+|+|+.++|||+|+|+|.+.. |.- ....|.|+-.-...+ ..++..+.+.++||.|.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGT--FSE---RQGNTIGVDFTMKTL---EIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--Ccc---cCCCccceEEEEEEE---EECCEEEEEEEEECCCh
Confidence 347899999999999999998654 422 123455542211111 11344568899999995
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.69 E-value=0.69 Score=48.13 Aligned_cols=64 Identities=28% Similarity=0.241 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-AIVQERTSKE 678 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~-~~~~~~~~e~ 678 (716)
++.+|.+++.++...+..+++++..++.+=.++.+....|..--..-+..++.+ .+.|+++...
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 444444444444444444444444443333333332222222222334444333 4567776543
No 127
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.69 E-value=2.7 Score=51.76 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhcc-----chHHHHHHHHHHHHH---H
Q 005055 440 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSE-----GPILDLVKRLIDQIG---S 511 (716)
Q Consensus 440 ~l~~le~~l~~~~~~~~~~~~~~~~~l~~ll~eY~~~~~GP~K~~~L~~FLq~~~~-----~~il~~~k~l~~~i~---~ 511 (716)
.+++|-+.|++....++++-+.+....++++.- .-+.-|.--+.|-.-+++.+. +.|+...+.-+..++ +
T Consensus 1472 el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l--~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1472 ELRNLIQQVRDFLTQPDADPDSIEEVAEEVLAL--ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHH
Confidence 344455555555555666666666666666654 233445544555555554443 466654444444433 2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHH
Q 005055 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (716)
Q Consensus 512 e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k 591 (716)
+-...+.+.+.....++.+++.+++..+- +..-+..|.+.-+.+.....-+...+.+...-|....+..+++..+.
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A----q~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVA----QGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555555444333 22334556666556666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 005055 592 NEISDWKRKYDQV 604 (716)
Q Consensus 592 ~e~~e~~r~y~~~ 604 (716)
.-.++++++|-+.
T Consensus 1626 ~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1626 TRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
No 128
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.69 E-value=0.003 Score=60.41 Aligned_cols=59 Identities=31% Similarity=0.461 Sum_probs=35.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.|+|+|..++|||+|+|+|+|.. +........+|..... ..+ ..++ ..+.++||+|++.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~--~~~---~~~~--~~~~iiDtpG~~~ 62 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSID--VPF---EYDG--KKYTLIDTAGIRR 62 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCcee--eEE---EECC--eeEEEEECCCCcc
Confidence 48999999999999999999874 2111222222222111 111 1123 3477899999864
No 129
>PRK03918 chromosome segregation protein; Provisional
Probab=96.68 E-value=2.7 Score=51.89 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005055 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (716)
Q Consensus 613 ~~~~~~i~~l~~r~~~~eerl~~~~~ql~~a 643 (716)
+.+..++.+++.++..++.++..+++++...
T Consensus 669 ~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 130
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.68 E-value=0.0033 Score=60.80 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=33.9
Q ss_pred eeCCCCCChhHHHHHhhCCCCccccccC---CCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 76 VCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 76 V~G~~rtGKS~LlN~llg~~~gF~~g~~---~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+.++|||+|+|.|.|.. +.++.. +..++.|...|. + ...+.++||+|+.
T Consensus 1 iiG~~~~GKStll~~l~~~~--~~~~~~~~~t~~~~~~~~~~~--------~--~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK--PKVANYPFTTLEPNLGVVEVP--------D--GARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC--ccccCCCceeecCcceEEEcC--------C--CCeEEEEeccccc
Confidence 68999999999999999875 223221 112233332221 1 2568999999984
No 131
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.67 E-value=0.0013 Score=65.52 Aligned_cols=101 Identities=20% Similarity=0.353 Sum_probs=58.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccc-----------cccC----CCcccceEEeeccccccccCCCCceeEEEEe
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ-----------VAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~-----------~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLD 134 (716)
++-+|+|+|...+|||+|++.|++...... +... .+..|..++.+... . +...+.+.|+|
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~--~---~~~~~~i~~iD 76 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE--K---NENNRKITLID 76 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE--B---TESSEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc--c---cccccceeecc
Confidence 678999999999999999999996532111 0001 12234433333322 0 12347899999
Q ss_pred CCCCcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHH
Q 005055 135 SEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (716)
Q Consensus 135 TEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (716)
|+|...+ ....+-++...=.-++|......++.+..+.+..
T Consensus 77 tPG~~~f-----~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~ 117 (188)
T PF00009_consen 77 TPGHEDF-----IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI 117 (188)
T ss_dssp ESSSHHH-----HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH
T ss_pred cccccce-----eecccceecccccceeeeeccccccccccccccc
Confidence 9995321 1234444443333456676666677666665544
No 132
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.67 E-value=0.0031 Score=65.49 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=37.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|+|+|+.++|||+|+|.|.|.. ..++. ++..++.|.+.|. | ..+-++||+|+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~---------~--~~i~l~DtpG~~ 58 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYK---------G--AKIQLLDLPGII 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEEC---------C--eEEEEEECCCcc
Confidence 47899999999999999999875 22222 1122345665441 2 567889999974
No 133
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.66 E-value=3.5 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.0
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
+...|+|+.|||||++|..++
T Consensus 25 g~~~~~G~NGsGKS~~lda~~ 45 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLL 45 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 467889999999999999744
No 134
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.65 E-value=0.002 Score=67.59 Aligned_cols=67 Identities=31% Similarity=0.427 Sum_probs=43.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC--CccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc-cccCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA-YDQTG 145 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~--~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~-~~~~~ 145 (716)
.||. |=|+|.++.|||.|+|.||+.. ..=.||.++++.|. .|.. -++ ..++|.||+|+|+ .++|.
T Consensus 38 ~pvn-vLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~--------~~~--~~l~lwDtPG~gdg~~~D~ 105 (296)
T COG3596 38 EPVN-VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLS--------YDG--ENLVLWDTPGLGDGKDKDA 105 (296)
T ss_pred Ccee-EEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhh--------ccc--cceEEecCCCcccchhhhH
Confidence 5665 5689999999999999999632 22235556555443 2322 123 5799999999964 33443
Q ss_pred cc
Q 005055 146 TY 147 (716)
Q Consensus 146 ~~ 147 (716)
+|
T Consensus 106 ~~ 107 (296)
T COG3596 106 EH 107 (296)
T ss_pred HH
Confidence 33
No 135
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.65 E-value=0.0032 Score=59.00 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.++|+.++|||+|+|+|.+.. |.-. ...|.|.=.-..-+.. ++....+.++||+|.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 59 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK--FDEN---YKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQ 59 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCc---cCCceeeeeEEEEEEE---CCEEEEEEEEecCCh
Confidence 7889999999999999999775 3332 1234343222211111 134478899999995
No 136
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.62 E-value=0.0034 Score=60.04 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=37.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce--EEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG--IWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|+|++.. |.- . ...|.| ...+..++ ++..+.+.++||.|.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~--~~~--~-~~~t~~~~~~~~~v~~-----~~~~~~~~i~D~~G~ 60 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE--FSE--N-QESTIGAAFLTQTVNL-----DDTTVKFEIWDTAGQ 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--C-CCCccceeEEEEEEEE-----CCEEEEEEEEeCCch
Confidence 7899999999999999999876 432 1 123444 22222222 344578899999994
No 137
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.62 E-value=0.0032 Score=62.57 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|+|++.. |..++. ..|.|.-.+...+. .+|..+.+-++||.|..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~--~~~~~~--~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR--FLVGPY--QNTIGAAFVAKRMV---VGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--cCCcCc--ccceeeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999765 754333 34555444443332 23556778899999964
No 138
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.62 E-value=0.0033 Score=60.18 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=38.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|++.. |... .+.|-|+-.-..++. .++..+.+.++||+|..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK--FKED---SQHTIGVEFGSKIIR---VGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEECcchH
Confidence 6899999999999999999765 4332 233444322222221 13455788999999953
No 139
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.59 E-value=0.0028 Score=70.25 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
++.+. |+|+||-|||||+|+|+|.+.
T Consensus 15 ~G~Iy-IGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 15 QGDIY-IGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CCcEE-EEEEcCCCCChHHHHHHHHhh
Confidence 46665 899999999999999999987
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.57 E-value=0.0067 Score=60.62 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=42.9
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCC---------CcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~---------~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+--|+|+|..++|||+|+|+|++....|.-..++ ...|.|+=+....... ++..+.+.|+||.|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV---TYKDTKINIVDTPGHAD 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---EECCEEEEEEECCCcHH
Confidence 3468999999999999999999754445332211 1124555444332211 23457899999999753
No 141
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.57 E-value=0.0077 Score=66.42 Aligned_cols=58 Identities=34% Similarity=0.494 Sum_probs=40.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCcc---ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF---~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..+..|+|+|.+++|||+|+|.|.|.. .+ ..+.|..+.|+-+.+ ++| ..+.|+||.|+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~---------~~~--~~i~l~DT~G~ 247 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDL---------PDG--GEVLLTDTVGF 247 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEe---------CCC--ceEEEEecCcc
Confidence 355689999999999999999999975 11 124455554443322 223 46889999997
No 142
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.57 E-value=0.0038 Score=60.31 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|++.+.. |.- ..+.|.|.=+....+. .++..+.+.+.||.|.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VNGQKIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCcccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 6799999999999999999765 532 2234555433322221 2455678999999995
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.57 E-value=0.0032 Score=59.12 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=37.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|+|+|+.++|||+|+|+|.|.. |... ...|.|+-..... .| .+.+.++||+|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~------~~-~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FSED---TIPTVGFNMRKVT------KG-NVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CCcC---ccCCCCcceEEEE------EC-CEEEEEEECCCC
Confidence 7899999999999999999875 5321 1345565443211 12 277899999995
No 144
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.55 E-value=0.0039 Score=60.23 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=40.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |.- .-..|.|+-....-+ .+++..+.+.+.||.|..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS--FTS---AFVSTVGIDFKVKTV---FRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCceeeEEEEEEE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999876 532 112366654333222 124556789999999953
No 145
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.54 E-value=0.0043 Score=59.19 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE----EeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL----WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI----Wmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|++.. |.... ..|.|+ +.+. .++..+.+-++||+|..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~--~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK--FSEQY---KSTIGVDFKTKTIE-------VDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEEE-------ECCEEEEEEEEECCChH
Confidence 7899999999999999999876 43222 123332 2221 13555788899999953
No 146
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.54 E-value=0.0035 Score=62.49 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=38.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|++.+.. |..+.. +.|.|+-.-...+ ..++..+.+.|+||+|-
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~--~~~~~~--~~t~~~~~~~~~~---~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGA--FLNGNF--IATVGIDFRNKVV---TVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCccCc--CCcccceeEEEEE---EECCEEEEEEEEeCCCc
Confidence 7889999999999999998765 544321 2344432211111 12355678999999994
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.52 E-value=0.27 Score=46.58 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005055 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA 636 (716)
Q Consensus 557 ~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~ 636 (716)
.++..+.+++..+.......+.+...+...|+.......+...+|+.-+..+ ......|..++..+..+...++.+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H----a~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH----AEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777778888888888888888888899999999887665 334566677777777777777777
Q ss_pred HHHHHHHHHHHH
Q 005055 637 REQALSAQEEVE 648 (716)
Q Consensus 637 ~~ql~~ak~E~~ 648 (716)
+..++.|+.+..
T Consensus 79 ~~~~~~a~~~l~ 90 (132)
T PF07926_consen 79 KAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHH
Confidence 777777777776
No 148
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.52 E-value=0.0055 Score=58.55 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=39.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|..++|||+|+|++.+.. |.- ....|.|...-...+.. ...+..+.+.+.||.|..
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI--FTK---DYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchH
Confidence 7899999999999999999765 532 12345565442222221 112445789999999953
No 149
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.51 E-value=0.0095 Score=67.11 Aligned_cols=56 Identities=32% Similarity=0.614 Sum_probs=36.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcc--ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF--~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|+|+|..++|||+|+|+|+|....+ ...+++..+..+.--|. | ..+.|+||+|++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---------~--~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---------G--REFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---------C--eEEEEEECCCCC
Confidence 38999999999999999999876222 11111112223333332 2 458899999985
No 150
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.49 E-value=0.004 Score=59.47 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=37.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|+.++|||+|+|++.+.. |.- ...|++....... + ..++..+.+-++||.|..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI--FVE--KYDPTIEDSYRKQ--I---EVDGQQCMLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc--ccCCchhhhEEEE--E---EECCEEEEEEEEECCCcc
Confidence 37899999999999999999764 532 2223332222221 2 124555778899999964
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=96.49 E-value=0.0045 Score=61.97 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=37.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+..-|+|+|..++|||+|+|+|.|.. |.++... .+| .... .+. .+ .+.++||+|++..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~-~~t--~~~~--~~~----~~---~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRP-GVT--RKPN--HYD----WG---DFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCC-cee--eCce--EEe----ec---ceEEEeCCccccc
Confidence 34568999999999999999999875 6554321 112 2111 111 11 4789999997543
No 152
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.48 E-value=0.0039 Score=59.76 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=36.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|.+.. |.... .+.+.-.+- .++ ..++..+.+-++||+|..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~~--~~~~~--~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGH--FVDDY--DPTIEDSYR--KQI---EIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccc--CCchhhhEE--EEE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 43221 122211111 111 123445788899999964
No 153
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=2.9 Score=49.66 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKS 624 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~ 624 (716)
+++.|.+++...+-...++..|+-+...+....+.+.+++.....-+..++++-.++ +...+...+...+.+.+++.
T Consensus 508 l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 508 LEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555444444444444444333 33344445666666776677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhh
Q 005055 625 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA-----KAALEKAAIVQERTS 676 (716)
Q Consensus 625 r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~-----Ka~leq~~~~~~~~~ 676 (716)
.+..++..+......+..+++|++..++|+..+=+.. -..|.+++..|+-+|
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~L 644 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELL 644 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhce
Confidence 7777777777777777888888888888887664333 345677777777654
No 154
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.47 E-value=0.007 Score=66.84 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC---Ccc-ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccccc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS---SGF-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~---~gF-~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~ 143 (716)
+.|+. |+|+|..++|||+|+|.|.|-. .|- ++| +-.+|+-.-.+..|. - ..|+|.|.+|.|...-
T Consensus 33 ~~~l~-IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG--v~etT~~~~~Y~~p~------~--pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 33 NAPLN-IAVTGESGSGKSSFINALRGLGHEDEGAAPTG--VVETTMEPTPYPHPK------F--PNVTLWDLPGIGTPNF 101 (376)
T ss_dssp H--EE-EEEEESTTSSHHHHHHHHTT--TTSTTS--SS--SHSCCTS-EEEE-SS---------TTEEEEEE--GGGSS-
T ss_pred cCceE-EEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC--CCcCCCCCeeCCCCC------C--CCCeEEeCCCCCCCCC
Confidence 35776 9999999999999999998753 222 222 224566666665442 1 2478889999986543
Q ss_pred CCcchhHHHHHhhhc--cceEEEccCCCCchHhhh
Q 005055 144 TGTYSTQIFSLAVLL--SSMFIYNQMGGIDESAID 176 (716)
Q Consensus 144 ~~~~d~~IFaLa~LL--SS~~IyN~~g~i~e~~l~ 176 (716)
.. .=|.=.+-+ -..||.=+.+.+.++++.
T Consensus 102 ~~----~~Yl~~~~~~~yD~fiii~s~rf~~ndv~ 132 (376)
T PF05049_consen 102 PP----EEYLKEVKFYRYDFFIIISSERFTENDVQ 132 (376)
T ss_dssp -H----HHHHHHTTGGG-SEEEEEESSS--HHHHH
T ss_pred CH----HHHHHHccccccCEEEEEeCCCCchhhHH
Confidence 21 111111111 234555556677777765
No 155
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.45 E-value=0.0048 Score=58.58 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=35.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|+|.+.. |.- ...|++.-.+..... .++..+.+-++||.|.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~~~-----~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH--FVD--EYDPTIEDSYRKQVV-----IDGETCLLDILDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CcC--CcCCcchheEEEEEE-----ECCEEEEEEEEECCCC
Confidence 6899999999999999999765 422 112222222222111 1344466778999995
No 156
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.44 E-value=0.0051 Score=59.35 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccc--eEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~Tk--GIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|++++++.. |.-.. ..|. +++.|...+ ++..+.+-++||.|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG--YEPQQ---LSTYALTLYKHNAKF-----EGKTILVDFWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCCc---CCceeeEEEEEEEEE-----CCEEEEEEEEeCCCch
Confidence 6889999999999999998764 53221 1232 455554332 4566788899999953
No 157
>PRK00098 GTPase RsgA; Reviewed
Probab=96.44 E-value=0.0035 Score=67.52 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++++|+.++|||+|+|.|+|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57799999999999999999864
No 158
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.44 E-value=0.0054 Score=59.36 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=40.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.=|.|+|+.++|||+|+|++++.. |.... ..|.|.-.+...+. .++..+.+.++||.|.
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNK--FDTQL---FHTIGVEFLNKDLE---VDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCcCc---CCceeeEEEEEEEE---ECCeEEEEEEEeCCCh
Confidence 347899999999999999999765 53321 23556543333222 2466688999999995
No 159
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.44 E-value=0.42 Score=57.28 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHH
Q 005055 545 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD 588 (716)
Q Consensus 545 ~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le 588 (716)
++.+...|.+++.+.|++.+++..|...+..=-.-++.+.++|.
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777775555544433333344444433
No 160
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.42 E-value=0.0055 Score=60.20 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.|.++|..+.|||+|+|.|.+... ..+++ .-.+|.+.-+.. + + ..+.++||+|+
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~-~~~~T~~~~~~~--~-----~---~~~~~iDtpG~ 170 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKKV-AKVGN-KPGVTKGIQWIK--I-----S---PGIYLLDTPGI 170 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeecC-CCCEEeeeEEEE--e-----c---CCEEEEECCCC
Confidence 578999999999999999998762 12222 223566643321 1 1 24789999997
No 161
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=1.1 Score=51.41 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV------LTKQKAMEDQVCSEIEV 621 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~------i~~~k~~~~~~~~~i~~ 621 (716)
|+..+.+++.++......++.+..++..-|+++..+.++.+. ++...+-. ++.......++...++.
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~-------Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDE-------LKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433333 33333332 34444445666677777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 622 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (716)
Q Consensus 622 l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~ 664 (716)
++..+..+...+-++..+.+..-++.+..-++|..+..+.+..
T Consensus 351 i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 351 IQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666666666777777777888777766666
No 162
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.41 E-value=0.0065 Score=58.08 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=37.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|+|+|+.++|||+|+|++++.. |.. ...+.+......... -+|..+.+.++||+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVT--DYDPTIEDSYTKQCE-----IDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCc--ccCCCccceEEEEEE-----ECCEEEEEEEEECCCCc
Confidence 347899999999999999999764 421 112322222222111 13445778899999964
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.41 E-value=3 Score=50.15 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005055 553 NDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR 632 (716)
Q Consensus 553 ~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eer 632 (716)
++|.++++++..+.+.-+.-+..+++....+.++|+....+...|..+|+.....+ +.+..+++ .+..+
T Consensus 441 ~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~l----e~l~~El~-------~l~~e 509 (980)
T KOG0980|consen 441 ADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKAL----ESLRQELA-------LLLIE 509 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHH-------HHHHH
Confidence 34455566666666555555556677777777777777777777777777754432 22333444 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 665 (716)
Q Consensus 633 l~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~l 665 (716)
+..+++.+....+.-..|....+.++ +.|-++
T Consensus 510 ~~~lq~~~~~~~qs~~~~~~~l~~~l-~~KD~~ 541 (980)
T KOG0980|consen 510 LEELQRTLSNLAQSHNNQLAQLEDLL-KQKDRL 541 (980)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH-HhhHHH
Confidence 44444444444455555555555555 444443
No 164
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.40 E-value=3.2 Score=49.30 Aligned_cols=169 Identities=20% Similarity=0.167 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH---HHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERY---KSE-------YLKRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~---~~~-------~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~ 579 (716)
+-+....+.|.+..+++.+.|+|+.+..+.. .++ ..+++-+...+++++|+...+.+-.|+.=
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~------- 408 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG------- 408 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------
Confidence 3344455666777777777777777665522 122 22345555555566666666666444332
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 580 SSSLSKTVDSLKNEISDWKRKYDQV----------LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 649 (716)
Q Consensus 580 ~~~~~~~le~~k~e~~e~~r~y~~~----------i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~ 649 (716)
++.-+++|.|.++-.-+.+.+ +.+.|.+++-......-.=..|...=.|+.++..++ +
T Consensus 409 ----~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sl--------e 476 (1265)
T KOG0976|consen 409 ----KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSL--------E 476 (1265)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhCh--------h
Confidence 222333333333333322221 111111111111111111112333333444443332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHH
Q 005055 650 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 697 (716)
Q Consensus 650 w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~ 697 (716)
=+||-.+-++..||++++.+.--+-+-|+.|+.--+||.|++....-|
T Consensus 477 ~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ 524 (1265)
T KOG0976|consen 477 KQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRK 524 (1265)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334555555578999999999999999999999999999998765544
No 165
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.40 E-value=3 Score=50.61 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHH----------------HHHHHHHHHHHH---
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS----------------DWKRKYDQVLTK--- 607 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~----------------e~~r~y~~~i~~--- 607 (716)
++...|.+|+..++-...+++.|+.++..|++.+.-=-.+|+..+.-.. ++...++.++..
T Consensus 375 ~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e 454 (775)
T PF10174_consen 375 RLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEE 454 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777677766666666666665555443322222222222211 333333333221
Q ss_pred --------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 608 --------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 608 --------~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
.+-.-+.++..+.+++..+..++..+++..-++..+++++.
T Consensus 455 ~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 455 QRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 11223556666777777677777666666666665555543
No 166
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.39 E-value=0.0047 Score=59.82 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=39.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
=|.|+|+.++|||+|+|++.+.. |.-.. ..|.|+-.....+. .++..+.+.|.||.|.
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~--f~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDS--FNPSF---ISTIGIDFKIRTIE---LDGKKIKLQIWDTAGQ 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCc--CCccc---ccCccceEEEEEEE---ECCEEEEEEEEeCCch
Confidence 37899999999999999999876 53321 23555433222221 1344578899999995
No 167
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.38 E-value=0.0058 Score=58.91 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=36.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE--EeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL--WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI--Wmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|++.. |.... ..|-|. +....+. ++..+.+-++||.|..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKK--FSNQY---KATIGADFLTKEVTV-----DDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCcCc---CCccceEEEEEEEEE-----CCEEEEEEEEeCCChH
Confidence 7899999999999999999875 43322 123332 2211111 2344677899999963
No 168
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.37 E-value=0.011 Score=58.53 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCCCccc-cccCCCcccceEEeeccccccccCCCCceeEEEEeCCC
Q 005055 59 EAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (716)
Q Consensus 59 eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~-~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEG 137 (716)
.+++.|.....+. -|.|+|+.++|||+|+|+|.+.. |. ..++..+ +.|...| + .+.+.++||.|
T Consensus 8 ~~~~~~~~~~~~~-ki~ilG~~~~GKStLi~~l~~~~--~~~~~~T~~~-~~~~i~~---------~--~~~~~l~D~~G 72 (190)
T cd00879 8 NVLSSLGLYNKEA-KILFLGLDNAGKTTLLHMLKDDR--LAQHVPTLHP-TSEELTI---------G--NIKFKTFDLGG 72 (190)
T ss_pred HHHHHhhcccCCC-EEEEECCCCCCHHHHHHHHhcCC--CcccCCccCc-ceEEEEE---------C--CEEEEEEECCC
Confidence 3455554333444 45999999999999999999865 32 1222222 2233322 1 25788999999
Q ss_pred Cc
Q 005055 138 ID 139 (716)
Q Consensus 138 l~ 139 (716)
..
T Consensus 73 ~~ 74 (190)
T cd00879 73 HE 74 (190)
T ss_pred CH
Confidence 53
No 169
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.37 E-value=0.0044 Score=66.38 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=36.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCC------CcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTH------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~------~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.+++++|+.++|||+|+|.|+|... +..|... ..+|....++..| ++ .+|+||+|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~------~~----~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLP------GG----GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcC------CC----CEEEECCCCCc
Confidence 3789999999999999999998631 2222110 1234444443221 11 36899999854
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.36 E-value=0.015 Score=65.68 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=38.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.|+|+|..++|||+|+|+|+|....+ ++. ++.....|.+.|. | +.+.|+||+|+..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~-v~~~~~~t~d~~~~~~~~~---------~--~~~~liDT~G~~~ 61 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAI-VADTPGVTRDRIYGEAEWL---------G--REFILIDTGGIEP 61 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCCcccceEEEEEEC---------C--cEEEEEECCCCCC
Confidence 58999999999999999999876321 211 1112223444442 2 5789999999864
No 171
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.06 Score=62.66 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred eEEEEeCCCCcccccCCcchhHHHHHhhhccceEEE--ccCCCCchHhhhhh
Q 005055 129 NLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIY--NQMGGIDESAIDRL 178 (716)
Q Consensus 129 ~vvlLDTEGl~~~~~~~~~d~~IFaLa~LLSS~~Iy--N~~g~i~e~~l~~L 178 (716)
.|+|+|.+|+| .+...|+||++.. +=-.+||| |.-.+...++.+.+
T Consensus 207 DivliDsPGld---~~se~tswid~~c-ldaDVfVlV~NaEntlt~sek~Ff 254 (749)
T KOG0448|consen 207 DIVLIDSPGLD---VDSELTSWIDSFC-LDADVFVLVVNAENTLTLSEKQFF 254 (749)
T ss_pred cceeccCCCCC---CchhhhHHHHHHh-hcCCeEEEEecCccHhHHHHHHHH
Confidence 68999999975 5677899999874 33455555 55555444444433
No 172
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.35 E-value=0.0073 Score=61.36 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~ 95 (716)
|+|+|...+|||+|+|+|++..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHc
Confidence 7899999999999999999754
No 173
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.34 E-value=0.0054 Score=66.69 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=43.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC--Ccc---ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS--SGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~--~gF---~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+.. |-|||+.++|||+++|.|+|++ +++ +..+...+.|.-|-....-+ ..+|....|-++||+|+|+
T Consensus 23 ~f~-im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l---~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 23 DFT-IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAEL---EEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred ceE-EEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeee---ecCCeEEEEEEeccCCccc
Confidence 444 7789999999999999999972 222 12111112233333333222 2357778999999999974
No 174
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.33 E-value=0.0079 Score=58.49 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=41.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+.-|.|+|+.++|||+|+|++++.. |.-. ...|.|+..-...+. .++..+.+-++||.|..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FPER---TEATIGVDFRERTVE---IDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCc---cccceeEEEEEEEEE---ECCeEEEEEEEeCCChH
Confidence 3468999999999999999999754 5322 234555543322221 13556889999999954
No 175
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.33 E-value=0.0063 Score=59.53 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=36.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccc--cccCC-CcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQ--VASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~--~g~~~-~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|++++.. |. +.++. ...++.+++ ++..+.+.|+||+|..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~----------~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRY----------KGQDYHLEIVDTAGQD 60 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEE----------CCEEEEEEEEECCChH
Confidence 6799999999999999999765 42 11221 122334332 2345678899999964
No 176
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.32 E-value=0.0064 Score=58.59 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=37.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|++++.. |.... ..|-|+-.....+. .+|..+.+-++||.|.
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999765 54321 22444321111111 1345578899999995
No 177
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.31 E-value=1.5 Score=54.31 Aligned_cols=151 Identities=12% Similarity=0.125 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHH---HHHHHHHHHHHHHHHHHHH----------HHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL---KNEISDWKRKYDQVLTKQK----------AMEDQ 614 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~---k~e~~e~~r~y~~~i~~~k----------~~~~~ 614 (716)
++..++...++..+.++++..+....+.+++++..+.+..+++ .......++..++...+-. +...+
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 4444555555555666666666666666666555555544444 2223344444443322222 12234
Q ss_pred HHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH--
Q 005055 615 VCSEIEVLK-------SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV-- 685 (716)
Q Consensus 615 ~~~~i~~l~-------~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~-- 685 (716)
+..+|.... .+++.+++--..+.+.....+.+.+.-++.|.++. ++.++++..|+..+..++..+..+.-
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~-e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEIS-EIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 444444433 44556665555566666677788888889999888 89999999988877776655443322
Q ss_pred -HHHHHHHHHHHHHH
Q 005055 686 -LREEFSSTLAEKVL 699 (716)
Q Consensus 686 -~~~~~~~~~~~~~~ 699 (716)
++.+-....+..++
T Consensus 651 el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 651 ELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 55555555555554
No 178
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.5 Score=51.65 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=13.5
Q ss_pred EEEeecccccccccCccCChHHHHH
Q 005055 210 VWLLRDFYLDLVEDNRKITPRDYLE 234 (716)
Q Consensus 210 ~wlvRDf~l~l~~~g~~~t~~eyLe 234 (716)
+|.+-|... || .++.++|.-
T Consensus 234 IW~LsDvd~----DG-kL~~dEfil 253 (1118)
T KOG1029|consen 234 IWTLSDVDG----DG-KLSADEFIL 253 (1118)
T ss_pred heeeeccCC----CC-cccHHHHHH
Confidence 788888764 34 467777743
No 179
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.29 E-value=0.008 Score=61.23 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=40.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|..++|||+|+|+|.+.. |.- ....|.|+-.+...+.. +++..+.+.|.||.|.
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~--~~~---~~~~T~~~d~~~~~i~~--~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEG--FGK---SYKQTIGLDFFSKRVTL--PGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCC---CCCCceeEEEEEEEEEe--CCCCEEEEEEEECCCc
Confidence 6899999999999999999765 532 22457776554433321 2334588999999994
No 180
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.29 E-value=0.0074 Score=58.08 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=38.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |... ..+.+...+....++ ++..+.+.++||+|..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~--~~~~--~~~~~~~~~~~~~~~-----~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK--FPTE--YVPTVFDNYSATVTV-----DGKQVNLGLWDTAGQE 59 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEEEEEE-----CCEEEEEEEEeCCCcc
Confidence 6799999999999999999876 4221 112222223322222 3556789999999975
No 181
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.27 E-value=0.0067 Score=57.42 Aligned_cols=57 Identities=30% Similarity=0.431 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|++.. |.- ...+.|.-.+.+ .+ ..++..+.+.++||+|..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~--~~~--~~~~~~~~~~~~--~~---~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT--FVE--EYDPTIEDSYRK--TI---VVDGETYTLDILDTAGQE 58 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--CcCCChhHeEEE--EE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999775 422 222333322222 11 112344778899999954
No 182
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.27 E-value=0.0081 Score=56.96 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=36.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCccc-ceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT-KGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~T-kGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|+|+|+.++|||+|+|+|++.. |.- ...+.+ ..++-.. +. ..+..+.+.++||.|.
T Consensus 3 i~i~G~~~~GKStli~~l~~~~--~~~--~~~~~~~~~~~~~~--~~---~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK--FNE--KHESTTQASFFQKT--VN---IGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CcCCccceeEEEEE--EE---ECCEEEEEEEEECCch
Confidence 7899999999999999999765 422 111222 2222221 11 1244578899999995
No 183
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.26 E-value=0.0075 Score=58.46 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=38.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+++|+.++|||+|+|++.+.. |. .+..|.+...|.. .+. -++..+.+-++||+|...
T Consensus 4 i~liG~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV--FI--ESYDPTIEDSYRK--QVE---IDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEeCCCccc
Confidence 7899999999999999998665 52 2233444334422 221 134457888999999653
No 184
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.25 E-value=4.1 Score=49.05 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHHHHH
Q 005055 663 AALEKAAIVQERTSKEMQQREDVLREEFSST 693 (716)
Q Consensus 663 a~leq~~~~~~~~~e~~q~~e~~~~~~~~~~ 693 (716)
..||-.-...|.|.|-.+.-|.+||+|+--.
T Consensus 472 ~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 472 GDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666667777777776433
No 185
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.25 E-value=6.5 Score=51.30 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=87.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHH---
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIND---KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE--- 593 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~d---lk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e--- 593 (716)
++.++.+...+..++...-....+.+-++++.... .+-+.+...++++-++....-|+.++..-.+.|.+..++
T Consensus 138 le~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~ 217 (1822)
T KOG4674|consen 138 LEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSI 217 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444443333333333333332222 255555556666666666666666666666666666655
Q ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 005055 594 -ISDWKRKYDQVLTKQKAM---EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE-----------VEEWKRKYGVAV 658 (716)
Q Consensus 594 -~~e~~r~y~~~i~~~k~~---~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E-----------~~~w~~kY~~~~ 658 (716)
+++++.+....-.+...+ -+.+..++.+|..++..+...++.+..+...-+.+ .+-|+.+-+.+-
T Consensus 218 ~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~ 297 (1822)
T KOG4674|consen 218 EVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELS 297 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333331111111 12233334444444444444444444443333333 345777777666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHH
Q 005055 659 REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 697 (716)
Q Consensus 659 ~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~ 697 (716)
..-+.+.++|...+++++++..+=.+.-.-+...-.-+
T Consensus 298 -~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl 335 (1822)
T KOG4674|consen 298 -HEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSL 335 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455788888888888888777666554444444444
No 186
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.24 E-value=0.0078 Score=58.56 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=39.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+++... |... ...|.|+-+-...+. .++..+.+.++||.|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGE--FEKK---YVATLGVEVHPLDFH---TNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCCh
Confidence 7899999999999999998554 4322 234555533222221 14556889999999964
No 187
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0067 Score=62.99 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|||+||.+.|||||||.++|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999865
No 188
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.24 E-value=0.011 Score=59.07 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCC--cccc-------ccCCCcccceEEeecccccc---ccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSS--GFQV-------ASTHRPCTKGLWLWSAPLKR---TALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~--gF~~-------g~~~~~~TkGIWmw~~p~~~---~~~~g~~~~vvlLDTEGl 138 (716)
|+|+|..++|||+|+|+|.+... -|.. |.|. ..+...+.|..+-.. ..+++..+.+.++||+|.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 78 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITL-DLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH 78 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCee-eecceEEEecccccccccccccccCceEEEEECCCc
Confidence 78999999999999999997421 0111 1111 112222344322100 012344578999999996
No 189
>PLN03118 Rab family protein; Provisional
Probab=96.22 E-value=0.008 Score=60.94 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=38.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|+|++.. |.. . ..|.|.-.+...+. .++..+.+.|+||.|..
T Consensus 17 v~ivG~~~vGKTsli~~l~~~~--~~~---~-~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 17 ILLIGDSGVGKSSLLVSFISSS--VED---L-APTIGVDFKIKQLT---VGGKRLKLTIWDTAGQE 73 (211)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CCC---c-CCCceeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 6699999999999999999865 421 1 23455422222111 13455789999999953
No 190
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.22 E-value=0.0049 Score=64.51 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
++.++|+.+.|||+|+|.|+|.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999986
No 191
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.21 E-value=0.016 Score=56.18 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=34.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
-|+|+|+.++|||+|+|.|.|.. |.. ...|.|+-.- .+ ..+| ..+.++||.|.
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~--~~~----~~~t~g~~~~--~i---~~~~--~~~~~~D~~G~ 68 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASED--ISH----ITPTQGFNIK--TV---QSDG--FKLNVWDIGGQ 68 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCC--Ccc----cCCCCCcceE--EE---EECC--EEEEEEECCCC
Confidence 49999999999999999999864 321 1234552110 00 0122 56888999995
No 192
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=2.6 Score=50.22 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHH------------
Q 005055 502 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD---DAINDKKKLADDYTSRI------------ 566 (716)
Q Consensus 502 ~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~le---e~i~dlk~~~e~~~~~~------------ 566 (716)
..+-.+........++--++.++.+++.++++.++++.+.++++..++ +...+|+++++.++.+.
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 333333333333444444555566666666665555554444443333 23334455555555444
Q ss_pred ------------HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHH
Q 005055 567 ------------NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ--VCSEIEVLKSRSTAAEAR 632 (716)
Q Consensus 567 ------------~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~--~~~~i~~l~~r~~~~eer 632 (716)
+.+..++.++....-.+.++|..-..-+..|+..-....+.+.+.-.. .+-++.++..+++....|
T Consensus 728 ~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~ 807 (970)
T KOG0946|consen 728 GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTR 807 (970)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhH
Confidence 334444444444444455555444444555554444333322222211 122233332223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHH
Q 005055 633 LAAAREQALSAQEEVEEWKRKY-------------GVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVL 699 (716)
Q Consensus 633 l~~~~~ql~~ak~E~~~w~~kY-------------~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~ 699 (716)
+..+..++.+-+++.+.-..+- ...+++.+...+|+.+-|-.-++....--+++.+.+++.-+++|.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence 3333333333333333222221 223345556666666666555555556666677777777777777
Q ss_pred HHHhhhh
Q 005055 700 SYLSRSL 706 (716)
Q Consensus 700 ~~~~~~~ 706 (716)
+-++..+
T Consensus 888 e~l~ka~ 894 (970)
T KOG0946|consen 888 ETLSKAL 894 (970)
T ss_pred hHHHHHH
Confidence 7665443
No 193
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.20 E-value=0.008 Score=57.93 Aligned_cols=57 Identities=26% Similarity=0.487 Sum_probs=36.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|++++++.. |. + ...+.+..+..+. + ..++..+.+-++||.|..
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~--~~-~-~~~~t~~~~~~~~--~---~~~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR--FI-G-EYDPNLESLYSRQ--V---TIDGEQVSLEILDTAGQQ 58 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCc--cc-c-ccCCChHHhceEE--E---EECCEEEEEEEEECCCCc
Confidence 7899999999999999998754 42 1 1112221121111 1 124556788899999964
No 194
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.20 E-value=2.2 Score=49.84 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=66.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------H
Q 005055 578 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE--------E 649 (716)
Q Consensus 578 ~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~--------~ 649 (716)
.++++-...|.++..-+++..|-..+.|....++........++++.+...+|++..++++..+.|+.+.. +
T Consensus 498 ~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQde 577 (961)
T KOG4673|consen 498 TKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDE 577 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhH
Confidence 33444444555566667777777778777777777666677777777777888888888888888887441 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Q 005055 650 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (716)
Q Consensus 650 w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~ 692 (716)
-+...+.++ .+=-.|- .+.++.-..+--|||-+|.|+-.
T Consensus 578 ar~~~~~lv-qqv~dLR---~~L~~~Eq~aarrEd~~R~Ei~~ 616 (961)
T KOG4673|consen 578 ARERESMLV-QQVEDLR---QTLSKKEQQAARREDMFRGEIED 616 (961)
T ss_pred HHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333 1111221 22333334455677777776543
No 195
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.19 E-value=0.008 Score=57.42 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|++.. |... ...|.|.=.-..-+ ..++..+.+.|+||+|..
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDT--FDPD---LAATIGVDFKVKTL---TVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCcc---cCCcccceEEEEEE---EECCEEEEEEEEECCCch
Confidence 7899999999999999999765 4321 12233321110000 012345789999999953
No 196
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.18 E-value=0.01 Score=58.86 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCcccc-ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~-g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|+|+|+.++|||+|+|+|.|.. |.. .+|..+ |.+...+ + .+.+.++||.|..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~--~~~~~~t~~~-~~~~~~~---------~--~~~~~~~D~~G~~ 72 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDR--LAQHQPTQHP-TSEELAI---------G--NIKFTTFDLGGHQ 72 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CcccCCcccc-ceEEEEE---------C--CEEEEEEECCCCH
Confidence 457899999999999999999864 432 223222 3333332 1 2678899999964
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.17 E-value=0.029 Score=63.18 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=36.9
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
..-|+|+|..++|||+|+|+|+|... ..++ ....+|.... ..++. .+| ..+.|+||.|+..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~-~~~gtt~~~~--~~~~~---~~~--~~~~liDT~G~~~ 232 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEER-VIVS-DIAGTTRDSI--DIPFE---RNG--KKYLLIDTAGIRR 232 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCe-eecC-CCCCceECcE--eEEEE---ECC--cEEEEEECCCccc
Confidence 35699999999999999999998752 1111 1112222111 11111 123 3688999999853
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.17 E-value=0.0079 Score=67.36 Aligned_cols=62 Identities=32% Similarity=0.508 Sum_probs=41.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
...+. |+|+|++..|||.|||.|+|... ++-+.+-.+|+.+-=-. + .-+| +.|.|+||-|+-
T Consensus 215 r~G~k-vvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~--i---~i~G--~pv~l~DTAGiR 276 (454)
T COG0486 215 REGLK-VVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEED--I---NLNG--IPVRLVDTAGIR 276 (454)
T ss_pred hcCce-EEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEE--E---EECC--EEEEEEecCCcc
Confidence 34565 78999999999999999999863 22233334555543211 1 1234 789999999984
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.17 E-value=1.3 Score=53.79 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=12.8
Q ss_pred HHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 005055 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (716)
Q Consensus 569 l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y 601 (716)
++.+...+..++...+.++-+++.++.+.++.+
T Consensus 300 l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 300 LRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444333
No 200
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.16 E-value=0.013 Score=62.26 Aligned_cols=58 Identities=33% Similarity=0.423 Sum_probs=37.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+...|.|+|.+++|||+|+|.|.|.. ...+++. -.+|++. -|.. + +. .+.|+||+|+-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~-~~~~~~~-~g~T~~~-~~~~-~------~~--~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK-VAKVGNR-PGVTKGQ-QWIK-L------SD--GLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC-ccccCCC-CCeecce-EEEE-e------CC--CEEEEECCCcc
Confidence 34569999999999999999999864 1233332 1235442 2211 1 11 36899999984
No 201
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.16 E-value=0.027 Score=63.69 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=36.8
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccc----eEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~Tk----GIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+|+|..++|||+|+|.|+|... +.+++. ...|. ..|.| ++ ..+.|+||.|+.
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~-~gtt~~~~~~~~~~---------~~--~~~~lvDT~G~~ 232 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEER-VIVSDI-AGTTRDSIDTPFER---------DG--QKYTLIDTAGIR 232 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc-eeecCC-CCceEEEEEEEEEE---------CC--eeEEEEECCCCC
Confidence 45699999999999999999998752 222221 12222 22222 22 457899999985
No 202
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.16 E-value=0.78 Score=52.46 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHH
Q 005055 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (716)
Q Consensus 561 ~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~ 592 (716)
.+.++++.+..+...++.+...+..++++.++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555555554444
No 203
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.15 E-value=0.01 Score=58.02 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccc-------cCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~-------~~~g~~~~vvlLDTEGl 138 (716)
+.=|.|+|+.++|||+|+|++.+.. |.-. ...|.|+......+... .-++..+.+-|+||.|.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK--FNPK---FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCcc---CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh
Confidence 3447899999999999999998765 5322 12355554432222111 11245578999999994
No 204
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.15 E-value=0.0085 Score=68.08 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=38.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.++ -|+|+|++++|||+|+|+|++....| + +....+|.-+... .+. .+| +.+.++||.|+.
T Consensus 202 ~g~-kVvIvG~~nvGKSSLiN~L~~~~~ai-v-s~~pgtTrd~~~~--~i~---~~g--~~v~l~DTaG~~ 262 (442)
T TIGR00450 202 DGF-KLAIVGSPNVGKSSLLNALLKQDRAI-V-SDIKGTTRDVVEG--DFE---LNG--ILIKLLDTAGIR 262 (442)
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhCCCCcc-c-CCCCCcEEEEEEE--EEE---ECC--EEEEEeeCCCcc
Confidence 344 47899999999999999999875222 2 2222334332211 111 123 567899999974
No 205
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.15 E-value=4.3 Score=49.47 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSE---RYKSEYLKRYDDAINDKKKLADDYTSRI----------NNLQGENISL 576 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~---~~~~~~~k~lee~i~dlk~~~e~~~~~~----------~~l~~k~~~l 576 (716)
.++...+..|++.+++++..+.+++-+.+ +...+-...+++.+.-.++-++....+. .++.....++
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el 486 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEEL 486 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999998887777665544 4444444445555554444444432222 3444444455
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 577 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 656 (716)
Q Consensus 577 e~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~ 656 (716)
..++..+.+-|.....+.+-|.-++..+.++.|. ...+...+.++|..+++.+.-+++.-.....++. .
T Consensus 487 ~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt----~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~-------~ 555 (1195)
T KOG4643|consen 487 LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKT----CDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ-------S 555 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------H
Confidence 5555666666666666666666666665555443 2333344444555555555555554333333333 2
Q ss_pred HHH--HHHHHHHHHHHHHHHhhHHHHhhHHHHH
Q 005055 657 AVR--EAKAALEKAAIVQERTSKEMQQREDVLR 687 (716)
Q Consensus 657 ~~~--~~Ka~leq~~~~~~~~~e~~q~~e~~~~ 687 (716)
|.. +-.+.|||.++-.+...++.++--|+|-
T Consensus 556 Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 556 LKTTSQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 221 4567888888888877777777767665
No 206
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.14 E-value=0.0084 Score=60.28 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=39.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE--EeeccccccccCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL--WLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI--Wmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
+.=|.|+|+.++|||+|+|++++.. |.- .-..|.|+ .+|..- .+|..+.+.|+||.|.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~-----~~~~~~~l~l~D~~G~ 65 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT--FSG---SYITTIGVDFKIRTVE-----INGERVKLQIWDTAGQ 65 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCC---CcCccccceeEEEEEE-----ECCEEEEEEEEeCCCc
Confidence 3448899999999999999999875 531 11345553 233221 1355578899999995
No 207
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=3.8 Score=50.01 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=112.2
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHH
Q 005055 515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (716)
Q Consensus 515 ~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~ 594 (716)
..+.++++.+.+++.++.++..++...+-. +++...+.-...++.....++ =+.....+-+.+..+.+.++.++.++
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf-~~l~~ql~l~~~~l~l~~~r~--~~~e~~~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKF-RDLKQQLELKLHELALLEKRL--EQNEFHKLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--hcChHhhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555332111 122222222222222222222 12233445566667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 595 SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQER 674 (716)
Q Consensus 595 ~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~ 674 (716)
-+-.+.|...-...+..+......-++-++|+..++..+..+...++....+++.=.++|+.+. -.-..+++++..+++
T Consensus 758 ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~-lE~e~l~~e~~~~k~ 836 (1174)
T KOG0933|consen 758 KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ-LEHEELEKEISSLKQ 836 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7777777766555544444444444544556777777777777776666666666667788777 456778899999999
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 005055 675 TSKEMQQREDVLREEFSSTLAEKVLSYLS 703 (716)
Q Consensus 675 ~~e~~q~~e~~~~~~~~~~~~~~~~~~~~ 703 (716)
.+++....-+.|-.+....-+.=...+..
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 99998888888888877766554444433
No 208
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.14 E-value=0.0083 Score=68.34 Aligned_cols=58 Identities=36% Similarity=0.493 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|+|+|.+.+|||+|+|.|+|....+ ++ .....|..+..... ..+| ..+.|+||.|+.
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~~a~-v~-~~~gtT~d~~~~~i-----~~~g--~~i~l~DT~G~~ 274 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEERAI-VT-DIAGTTRDVIEEHI-----NLDG--IPLRLIDTAGIR 274 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-cC-CCCCcccccEEEEE-----EECC--eEEEEEeCCCCC
Confidence 58999999999999999999875222 21 12223433222111 1123 468899999974
No 209
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.13 E-value=0.032 Score=63.95 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=36.9
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccc----eEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~Tk----GIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+|+|..++|||+|+|+|+|.. +...+.....|. +.|.+ +| ..+.|+||.|+.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~--~~~~s~~~gtT~d~~~~~~~~---------~~--~~~~l~DTaG~~ 270 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEE--RSVVDDVAGTTVDPVDSLIEL---------GG--KTWRFVDTAGLR 270 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC--cccccCCCCccCCcceEEEEE---------CC--EEEEEEECCCcc
Confidence 3578999999999999999999875 222222222232 22322 23 356789999974
No 210
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.13 E-value=0.02 Score=55.03 Aligned_cols=55 Identities=36% Similarity=0.482 Sum_probs=35.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..|.++|..++|||+|+|.|.+.. ...++++. .+|+.+-+-.. + ..+.|+||+|+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~-~~t~~~~~~~~-------~---~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRH-SASTSPSP-GYTKGEQLVKI-------T---SKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-ccccCCCC-CeeeeeEEEEc-------C---CCEEEEECcCC
Confidence 345999999999999999999753 24444433 23444321110 1 24789999995
No 211
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.13 E-value=0.0091 Score=57.94 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=37.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++++.. |.- ...|++...+.. .+ ..++..+.+.++||.|..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQ--FPE--VYVPTVFENYVA--DI---EVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC--CCCCccccceEE--EE---EECCEEEEEEEEeCCCch
Confidence 7899999999999999999865 532 122322222222 22 124556789999999964
No 212
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.12 E-value=0.0099 Score=60.56 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=40.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|++.. |.-. ...|.|+-.+...+. ..+|..+.+.+.||.|..
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~--~~~~---~~~ti~~d~~~~~i~--~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGR--FAEV---SDPTVGVDFFSRLIE--IEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCceeceEEEEEEEE--ECCCCEEEEEEEeCCcch
Confidence 7899999999999999999765 5322 234666533332221 123556789999999953
No 213
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.0084 Score=65.58 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=42.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC----CccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~----~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|=|||+.++|||||+|.|+++. .-+...+..-..|..|=....-+ .++|-...|=++||+|+|+
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i---ee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI---EENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee---cCCCeEEeeEEeccCCCcc
Confidence 47789999999999999999873 11111112222344444333222 3578888999999999964
No 214
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.10 E-value=0.01 Score=56.20 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=35.5
Q ss_pred eeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 76 V~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
|+|..++|||+|+|+|.|.. |..+.. ..+|.........+ +| ..+.|+||+|++...
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~-~~~t~~~~~~~~~~-----~~--~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNW-PGVTVEKKEGRFKL-----GG--KEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCC-CCcccccceEEEee-----CC--eEEEEEECCCccccC
Confidence 68999999999999999875 444332 12233322111101 12 468999999986443
No 215
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.09 E-value=0.011 Score=58.58 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=38.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|++.+.. |... -..|.|.-.....+. .+|..+.+-++||.|..
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDE--FSES---TKSTIGVDFKIKTVY---IENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 7899999999999999999776 6321 123445322211121 23556788899999953
No 216
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.08 E-value=0.011 Score=57.18 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=35.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccc--cCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVA--STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g--~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|+|.+.. |.-. ++....|.++.+ ++..+.+.++||.|.+
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEE--FPENVPRVLPEITIPADV----------TPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccCCCcccceEeeeee----------cCCeEEEEEEeCCCch
Confidence 6789999999999999999765 5211 111112222221 2455789999999964
No 217
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.08 E-value=0.021 Score=69.20 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=40.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccC----CCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
.|+++|.+++|||+|.|+|.|.. +.+|+. ++ ...|.+.| .+..+.++||+|..+..
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve-~k~g~~~~-----------~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVE-RKEGQFST-----------TDHQVTLVDLPGTYSLT 64 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEe-eEEEEEEc-----------CceEEEEEECCCccccc
Confidence 48999999999999999999875 345443 22 22455443 12568899999997654
No 218
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.07 E-value=0.0094 Score=65.31 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=39.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
++=|+|+|.+.+|||+|||.|.+.. ..+++ |+..-+.|+..|. ++ ..+++.||+|+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~--------~~--~~~~i~D~PGl 216 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVD--------DY--KSFVIADIPGL 216 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeC--------CC--cEEEEEeCCCc
Confidence 5569999999999999999998754 22222 2222345766552 12 45889999998
No 219
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.07 E-value=3.3 Score=48.27 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=84.3
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHH-HHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Q 005055 513 RSSLMLKYRSIEDNMKLLKKQLEDSER-YKS------EYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK 585 (716)
Q Consensus 513 ~~~l~~k~~s~e~e~~~l~k~~e~~~~-~~~------~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~ 585 (716)
...+..+.......+..|+..++.... .+. .........+..++...++....+.........|.....+|..
T Consensus 237 ~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ 316 (522)
T PF05701_consen 237 AKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRS 316 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556566555555443 111 1122344456666777777777777777777777788888888
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 586 TVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG 655 (716)
Q Consensus 586 ~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~ 655 (716)
.|+..|.++...+.+.... +.+....-..+.++|...+.......+....+...|+.+..|++.=+.+-.
T Consensus 317 ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~ 389 (522)
T PF05701_consen 317 ELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAE 389 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777665 555544455555555555444444444445555555555555554444433
No 220
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.07 E-value=0.011 Score=57.21 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=38.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
|.|+|+.++|||+|+|++.+.. |.-. ..|.+...|.- .+. .++..+.+-++||.|.+..
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~--~~~~--~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDA--FPEE--YVPTVFDHYAV--SVT---VGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEE--EEE---ECCEEEEEEEEeCCCcccc
Confidence 6899999999999999999765 5321 12322233322 221 1344567779999997543
No 221
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.05 E-value=0.022 Score=54.65 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=35.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|..++|||+|+|+++... |. ....|++....... +. .++..+.+-+.||.|..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~~--~~---~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI--FV--EKYDPTIEDSYRKQ--VE---VDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEEE--EE---ECCEEEEEEEEECCCcc
Confidence 37899999999999999998543 42 11223222221111 11 13455778899999964
No 222
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.02 E-value=0.012 Score=59.01 Aligned_cols=58 Identities=26% Similarity=0.221 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|+|++.. |.- ....|.|.-.-...+. ..+|..+.+.|+||.|.
T Consensus 3 ivivG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~d~~~~~v~--~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGI--FSQ---HYKATIGVDFALKVIE--WDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCceeEEEEEEEEE--ECCCCEEEEEEEECCCc
Confidence 6799999999999999999765 432 1234666432211111 11256688999999996
No 223
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.02 E-value=0.0085 Score=64.07 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|=|||..|+|||+|+|.|++..- +.... ...+....+=+-...+.. ..+|..+.+-++||+|+|+
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l-~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSDI-ISEDSSIPPPSASISRTLEIEERTVEL-EENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEE-EETCEEEEEEEEEEC-CSS
T ss_pred EEEECCCCCCHHHHHHHHHhccc-ccccccccccccccccccceeeEEEEe-ccCCcceEEEEEeCCCccc
Confidence 56899999999999999998741 11110 001111222222222221 2346667889999999974
No 224
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.02 E-value=0.013 Score=57.33 Aligned_cols=56 Identities=23% Similarity=0.184 Sum_probs=36.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+++|+.++|||+|+|+|.+.. |. +. ..|.|.-+.. +. ...+.+.++||.|..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~-~~---~~t~~~~~~~--~~-----~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV-HT---SPTIGSNVEE--IV-----YKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC-Cc---CCccccceEE--EE-----ECCeEEEEEECCCCH
Confidence 4567899999999999999998654 32 11 2233332211 10 123689999999964
No 225
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.02 E-value=1 Score=43.14 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSE 538 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~ 538 (716)
..+...+..++.+++.+++.+...++.+.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLI 44 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44555555555555555555555543333
No 226
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.02 E-value=0.49 Score=51.73 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQALS----AQEEVEEWKRKYGVA 657 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~~----ak~E~~~w~~kY~~~ 657 (716)
+...|+++..+.+.+.++++++++.+.. ...|....+.+|+.+
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444444444444444444444433331 234455455554443
No 227
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.01 E-value=0.014 Score=66.88 Aligned_cols=73 Identities=32% Similarity=0.543 Sum_probs=45.4
Q ss_pred eeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccc----eEEeeccccccccCCCCce
Q 005055 54 FRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEY 128 (716)
Q Consensus 54 l~v~~eAl~~L~~i~-~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~Tk----GIWmw~~p~~~~~~~g~~~ 128 (716)
..++.+-+..|...+ .+...|+|+|..++|||+|+|+|+|... +.+.++ ...|. +...| +| .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~-~gvT~d~~~~~~~~---------~~--~ 86 (472)
T PRK03003 20 WELDDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDV-PGVTRDRVSYDAEW---------NG--R 86 (472)
T ss_pred cccchhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCC-CCCCEeeEEEEEEE---------CC--c
Confidence 555666665555322 3446799999999999999999998651 222221 11222 22222 22 3
Q ss_pred eEEEEeCCCCc
Q 005055 129 NLLLLDSEGID 139 (716)
Q Consensus 129 ~vvlLDTEGl~ 139 (716)
.+.|+||.|++
T Consensus 87 ~~~l~DT~G~~ 97 (472)
T PRK03003 87 RFTVVDTGGWE 97 (472)
T ss_pred EEEEEeCCCcC
Confidence 57889999975
No 228
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.00 E-value=0.015 Score=55.43 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=34.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |.... . ..|.|+=... + ....+.+.++||+|..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~--~~~~~-~-~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPEN--AQSQI-I-VPTVGFNVES--F-----EKGNLSFTAFDMSGQG 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccC--CCcce-e-cCccccceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999999753 21111 1 2244431111 0 0123778899999953
No 229
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.99 E-value=1.5 Score=49.03 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS 626 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~ 626 (716)
.++.....++.+.+.+..+++.++.+...++.++..+..++...+.+..-++.=|+.-+..+.. -...+.++..++..+
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~-~~~~~~~~~~~~~~l 212 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLE-LLELERERAEAQGEL 212 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHhHH
Confidence 3334444444444445555555555555555555555555555555444443333321111100 012333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005055 627 TAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 627 ~~~eerl~~~~~ql~~ak~E~~ 648 (716)
..++.++..++.+++.++.+..
T Consensus 213 ~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 213 GRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 230
>PTZ00258 GTP-binding protein; Provisional
Probab=95.99 E-value=0.0096 Score=66.32 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=40.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeeccccc-----cccCC-CCceeEEEEeCCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK-----RTALD-GTEYNLLLLDSEGI 138 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~p~~-----~~~~~-g~~~~vvlLDTEGl 138 (716)
....-|+|+|.+.+|||||+|.|.+.. -.++ .|..| ..|+.-|..+-. ...|. .....+.|+||+|+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p-~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDP-NTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccc-eEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 334469999999999999999997764 2222 23333 347765542110 00000 01135899999998
Q ss_pred c
Q 005055 139 D 139 (716)
Q Consensus 139 ~ 139 (716)
-
T Consensus 96 v 96 (390)
T PTZ00258 96 V 96 (390)
T ss_pred C
Confidence 3
No 231
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.98 E-value=0.015 Score=55.44 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |. . . ..|.|+=..... .+..+.+.++||.|..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~--~~-~--~-~~t~~~~~~~~~------~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE--LV-T--T-IPTVGFNVEMLQ------LEKHLSLTVWDVGGQE 55 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--cc-c--c-cCccCcceEEEE------eCCceEEEEEECCCCH
Confidence 6789999999999999999876 42 1 1 234443221111 1234789999999964
No 232
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.97 E-value=2.8 Score=50.87 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005055 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKK 532 (716)
Q Consensus 503 k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k 532 (716)
+++++.-...+..+..-++.++.++..|+.
T Consensus 230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~ 259 (775)
T PF10174_consen 230 QTVIEEKDTKIASLERMLRDLEDEIYRLRS 259 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334333333344443334444444444443
No 233
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.96 E-value=0.011 Score=57.45 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=36.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|++++.. |.... .+ |.+--... .+ ..++..+.+.++||.|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~--~~-~~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDY--VP-TVFENYSA-DV---EVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCC--CC-cEEeeeeE-EE---EECCEEEEEEEEECCCCc
Confidence 5799999999999999999865 53221 12 22221111 11 124556789999999964
No 234
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.96 E-value=3 Score=44.91 Aligned_cols=109 Identities=21% Similarity=0.299 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH----HhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 005055 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLS----KTVDSLKNEISDWK----RKYDQVLTKQKAMEDQVCSEIE 620 (716)
Q Consensus 549 ee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~----~~le~~k~e~~e~~----r~y~~~i~~~k~~~~~~~~~i~ 620 (716)
++-+..|..+...++.+.+.|..+..+.|++.+.|. ++|..+..++..+. ++.++... ++.....|.++|.
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~r-QQEEIt~Llsqiv 244 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRR-QQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433 46666666654433 33333333 4455666777777
Q ss_pred HHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 621 VLKSRSTAA-------EARLAAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 621 ~l~~r~~~~-------eerl~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
+++.|+... ...|.+..+.-.....|..+.+.||...+
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777775443 23344444444455567777777777766
No 235
>PRK01156 chromosome segregation protein; Provisional
Probab=95.94 E-value=5.2 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEeeCCCCCChhHHHHHhh
Q 005055 71 IGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~ll 92 (716)
-+|..|+|+.|+|||+|+..|.
T Consensus 23 ~gi~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 23 TGINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999999975
No 236
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.94 E-value=0.014 Score=56.39 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|+|+|..++|||+|+|++++.. |... ..|.+....- ..+. .++..+.+.+.||.|..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~~--~~~t~~~~~~--~~~~---~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRES--YIPTIEDTYR--QVIS---CSKNICTLQITDTTGSH 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC--cCCcchheEE--EEEE---ECCEEEEEEEEECCCCC
Confidence 37899999999999999999765 5322 1122211111 1111 12344778899999964
No 237
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.93 E-value=3.7 Score=48.75 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=65.1
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI---EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 656 (716)
Q Consensus 580 ~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i---~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~ 656 (716)
++....+=..+|....|+...|-.+-|+.--+.+.++++- .+|..++..+++.+..+++++...-+|+..|...+++
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444455557778888888888877666544444444432 2566777788888888888888888888887765544
Q ss_pred HHH-------------HHHHHHHHHHHHHHHhhHHHHhhH
Q 005055 657 AVR-------------EAKAALEKAAIVQERTSKEMQQRE 683 (716)
Q Consensus 657 ~~~-------------~~Ka~leq~~~~~~~~~e~~q~~e 683 (716)
.++ ..|..|-+..-.+-.+++..|..|
T Consensus 235 ~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE 274 (617)
T PF15070_consen 235 YLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEE 274 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 344455544444445555555444
No 238
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.93 E-value=0.013 Score=56.49 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=38.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++++.. |.... ..|.|+-....++. .++..+.+-+.||.|..
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNE--FHSSH---ISTIGVDFKMKTIE---VDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 7899999999999999999765 64321 23555422222221 13455778899999853
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.92 E-value=0.029 Score=59.27 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.4
Q ss_pred EEeeCCCCCChhHHHHHhhCC
Q 005055 74 VSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~ 94 (716)
|+|+|..++|||+|+|+|++.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 240
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.92 E-value=0.01 Score=57.00 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=35.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccc-cccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~-~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|.+.....+ .-...-..|.|+-.....+ + +..+.++||.|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~ 61 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-----G--NARLKFWDLGGQE 61 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-----C--CEEEEEEECCCCh
Confidence 68899999999999999987431100 0011112233433322111 1 3678999999964
No 241
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.92 E-value=2 Score=48.72 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 005055 562 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (716)
Q Consensus 562 ~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~ 603 (716)
+..++..++.+..++..++..-+..+-+++.++.++++....
T Consensus 259 l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 259 LKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 242
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.90 E-value=0.57 Score=50.29 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=64.8
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHH
Q 005055 516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS 595 (716)
Q Consensus 516 l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~ 595 (716)
|+.|++.++++-..|+.....+......++..-+..|.|--++......+++.|......-.+.+....+++.++..++.
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333222233222333344444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH------H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 596 DWKRKYDQVLTK------Q----KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 652 (716)
Q Consensus 596 e~~r~y~~~i~~------~----k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~ 652 (716)
++.++.++.-.+ + |.....+.+ .+..+++|.++..+.+..|++|....++
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a-------EL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQA-------ELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 555555554211 1 111222333 3557777777777777778877775543
No 243
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.89 E-value=0.024 Score=57.23 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=53.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC--------Ccccccc-CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS--------SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~--------~gF~~g~-~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
.-|+|+|...+|||+|+++|++.. .++.+.. ......+|+=+-....... .....+.|+||+|....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~~~- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE---TANRHYAHVDCPGHADY- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec---CCCeEEEEEECcCHHHH-
Confidence 459999999999999999998642 1111111 1111133443333222211 12356889999996321
Q ss_pred cCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
....+.+++..=.-++|......+..+....+
T Consensus 79 ----~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~ 110 (195)
T cd01884 79 ----IKNMITGAAQMDGAILVVSATDGPMPQTREHL 110 (195)
T ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH
Confidence 12335555544445666666555555444433
No 244
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.89 E-value=0.018 Score=55.45 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|+|+|+.++|||+|++.|.+.. |.-+. ..|.|+=.-...+ ..+|..+.+.++||.|..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~---~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTV---EIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCcH
Confidence 356789999999999999999998643 32221 1233321100011 123445678899999953
No 245
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=95.87 E-value=0.016 Score=55.56 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|..++|||+|++++++.. |.- ...|++....... + ..+|..+.+-|+||.|..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGT--FIE--KYDPTIEDFYRKE--I---EVDSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCCchhheEEEE--E---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999754 431 2223222232221 1 124555678899999964
No 246
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.80 E-value=0.013 Score=62.47 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=39.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeeccccc---cccCCCC---ceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK---RTALDGT---EYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~p~~---~~~~~g~---~~~vvlLDTEGl~ 139 (716)
|+|+|.+.+|||+|+|.|.|... .++ .|+.| ..|++.|..+-. ....++. ...+.|+||+|+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p-~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhc-eeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 68999999999999999998762 332 23333 347776644310 0000111 1358899999983
No 247
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.80 E-value=0.011 Score=55.40 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~ 95 (716)
|+|+|..++|||+|+|+|.|..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 6899999999999999999875
No 248
>PLN03110 Rab GTPase; Provisional
Probab=95.80 E-value=0.016 Score=59.25 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=42.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
...=|.|+|+.++|||+|+++|.+.. |... ...|.|+-.+...+.. +|..+.+-|+||.|.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~--~~~~---~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE--FCLE---SKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQ 71 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeEEEEEEEEEE---CCEEEEEEEEECCCc
Confidence 34458999999999999999999865 5432 2346666444333322 355578899999995
No 249
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.80 E-value=0.016 Score=59.57 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=41.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC---CccccccC-CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS---SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~---~gF~~g~~-~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
=|-|+|..+.|||+|.|.|+... ++-.+++. .-|.|.-|-.-...+ ..+|-+..+-++||+|+|+
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi---eE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI---EEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee---eecceEEEEEEecCCCccc
Confidence 36788999999999999999542 12222222 223444444433332 2356678889999999974
No 250
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.79 E-value=0.046 Score=65.92 Aligned_cols=56 Identities=30% Similarity=0.428 Sum_probs=37.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCccc----ceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~T----kGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+|+|..++|||+|+|+|+|....+ .+...++| .+.|.| +| ..+.|+||.|+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~---------~~--~~~~liDTaG~~ 509 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEI---------DG--EDWLFIDTAGIK 509 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEE---------CC--CEEEEEECCCcc
Confidence 3468999999999999999999886322 11111222 234444 23 246689999974
No 251
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.75 E-value=4.3 Score=46.01 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=17.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 519 KYRSIEDNMKLLKKQLEDSERYKSEYLK 546 (716)
Q Consensus 519 k~~s~e~e~~~l~k~~e~~~~~~~~~~k 546 (716)
..+-++.+++.+++++++.+..++.+++
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555544
No 252
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.74 E-value=3.7 Score=44.71 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHH
Q 005055 539 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 598 (716)
Q Consensus 539 ~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~ 598 (716)
++.+.....+++++..|+...+.+..+.+.+..-.-.+.+++..+..++..+++...+..
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555556666666666666666666666666666666666666666666666655543
No 253
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.73 E-value=0.019 Score=56.50 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=38.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|++.. |.-. ...|.|.-.... + ..+++..+.+.+.||.|..
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~--~~~~---~~~t~~~~~~~~-i--~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGK--FPEE---YVPTVFENYVTN-I--QGPNGKIIELALWDTAGQE 60 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCC---CCCeeeeeeEEE-E--EecCCcEEEEEEEECCCch
Confidence 7899999999999999999765 5321 122333322111 1 1223566889999999953
No 254
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.73 E-value=0.78 Score=49.70 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=62.1
Q ss_pred hhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHH
Q 005055 574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE-----ARLAAAREQALSAQEEVE 648 (716)
Q Consensus 574 ~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~e-----erl~~~~~ql~~ak~E~~ 648 (716)
.+|..-+.-.+++-..++.|..+++.++.++-.+-|. |...++..+....... ..=..+-.|+..++..++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~Kl----LR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKL----LREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH----HHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 4444555566666666777777777777776555444 3444444443311111 334567788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 649 EWKRKYGVAVREAKAALEKAAIVQE 673 (716)
Q Consensus 649 ~w~~kY~~~~~~~Ka~leq~~~~~~ 673 (716)
.|-++|+.++ ..|..+-.+-.+|+
T Consensus 144 qLe~d~qs~l-DEkeEl~~ERD~yk 167 (319)
T PF09789_consen 144 QLERDLQSLL-DEKEELVTERDAYK 167 (319)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8888888888 88888888888876
No 255
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.73 E-value=0.027 Score=67.58 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=55.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchh
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYST 149 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~ 149 (716)
+..+|+|+|....|||+|+|+|.+.. |..+. ....|..+..+..++. .++..+.+.|+||+|...+. .+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e-~~GiTq~i~~~~v~~~---~~~~~~kItfiDTPGhe~F~-----~m 311 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKE-AGGITQKIGAYEVEFE---YKDENQKIVFLDTPGHEAFS-----SM 311 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcc--Ccccc-CCccccccceEEEEEE---ecCCceEEEEEECCcHHHHH-----HH
Confidence 34579999999999999999998765 33221 1112222222222221 12345789999999964321 22
Q ss_pred HHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 150 QIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 150 ~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
+...+...=.-++||.....+..+..+.+
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I 340 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAI 340 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHH
Confidence 33333332234677776655555555544
No 256
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.73 E-value=0.013 Score=64.97 Aligned_cols=56 Identities=34% Similarity=0.422 Sum_probs=36.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCc----cccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSG----FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~g----F~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|..++|||+|+|.|++...+ +.+++. -.+|.++ .+. |+ ++ .+.|+||+|+.
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~-~~~-~~-----~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDL-IEI-PL-----DD---GHSLYDTPGII 215 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeE-EEE-Ee-----CC---CCEEEECCCCC
Confidence 5889999999999999999986432 333322 2345553 221 11 11 25789999985
No 257
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=95.72 E-value=0.015 Score=66.67 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
++-|+++|.+.+|||+|+|.|.+.. ..+++ |..| ..|++.+. ...+.|.||+|+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P-~lGvv~~~-----------~~~f~laDtPGl 216 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVP-NLGVVQAG-----------DTRFTVADVPGL 216 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccc-eEEEEEEC-----------CeEEEEEECCCC
Confidence 5679999999999999999999864 23322 2222 34555431 246889999998
No 258
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.71 E-value=5.5 Score=47.27 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH---HHHHHHHHHHHH
Q 005055 645 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE---FSSTLAEKVLSY 701 (716)
Q Consensus 645 ~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~---~~~~~~~~~~~~ 701 (716)
+-..+-...|-.+- +.|+.+.-+...-....++.+++=..+..+ ++..++.|+-++
T Consensus 167 ~QL~Elq~~Fv~lt-ne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 167 EQLAELQDAFVKLT-NENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred HHHHHHHHHHHHHH-HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33444444555555 778777777777777676666666666543 445666665443
No 259
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.70 E-value=7.6 Score=47.51 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005055 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKK 532 (716)
Q Consensus 501 ~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k 532 (716)
.++.-+....-+...++++.+++...++++.-
T Consensus 319 tdr~kteeL~eEnstLq~q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 319 TDRHKTEELHEENSTLQVQKEQLDGQMELLQI 350 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence 44445555555566666666666555555544
No 260
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.69 E-value=0.024 Score=54.05 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=35.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|..++|||+|+|++.+.. +.- ...|.|+=.-... ...+.+.+.||+|..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~--~~~----~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~ 54 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE--VVT----TIPTIGFNVETVE-------YKNVSFTVWDVGGQD 54 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCC----CCCCcCcceEEEE-------ECCEEEEEEECCCCh
Confidence 6899999999999999999886 321 1234443221111 113679999999964
No 261
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.69 E-value=0.016 Score=56.44 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|+.++|||+|+|+|.+.. |. .. ..|.|+-..... .+ .+.+.++||.|..
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~--~~---~~-~~t~g~~~~~~~-----~~--~~~l~l~D~~G~~ 69 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGED--ID---TI-SPTLGFQIKTLE-----YE--GYKLNIWDVGGQK 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCC--CC---Cc-CCccccceEEEE-----EC--CEEEEEEECCCCH
Confidence 46799999999999999999873 32 12 235563222111 12 3678999999964
No 262
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.68 E-value=0.0029 Score=77.45 Aligned_cols=182 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k---~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~ 586 (716)
+..+..+.....-++.++.-|..++++.+.......+ +++..+.++++..++.......|..+...++..+..+.++
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eq 279 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQ 279 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666677776666655444433 6777888887777777777767777777666666666555
Q ss_pred HH--------------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 587 VD--------------SLKNEISDWKRKYDQVLTK----QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 587 le--------------~~k~e~~e~~r~y~~~i~~----~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
++ .+..++.+|+++|+.-+.. .-..+..+...|.+++..+..+..++..+++.......|++
T Consensus 280 leeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 280 LEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 5677888999999987433 33345678888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Q 005055 649 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (716)
Q Consensus 649 ~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~ 692 (716)
+-...-+..- ...+.|++....+++.+.+...+-+.+..+.-.
T Consensus 360 Dl~~eLe~~~-~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 360 DLTSELEKAQ-AAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665 566777777777888777777776666555433
No 263
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.68 E-value=6.1 Score=46.32 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHH----------------------HHHH
Q 005055 540 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE----------------------ISDW 597 (716)
Q Consensus 540 ~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e----------------------~~e~ 597 (716)
-+++.++-+.+.|..++.........++.++.-+..++.+...+.-.++.+++. ..++
T Consensus 513 ~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dL 592 (961)
T KOG4673|consen 513 DKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDL 592 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344556677788887766555555555554444444444444444444333331 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005055 598 KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 640 (716)
Q Consensus 598 ~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql 640 (716)
+......=+..-.-.+-+..+|.+|+.|+..+|-||.++.-++
T Consensus 593 R~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 593 RQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111111111111246678899999999999999988776544
No 264
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.68 E-value=0.019 Score=57.59 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCcccc--ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~--g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|++++.. |.- .++......+.+.+ +|..+.+-++||.|..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~--~~~~~~~t~~~~~~~~~~~---------~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT--FEPKYRRTVEEMHRKEYEV---------GGVSLTLDILDTSGSY 58 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCccCCCchhhheeEEEEE---------CCEEEEEEEEECCCch
Confidence 6899999999999999999865 432 11211111112222 2444778899999964
No 265
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.67 E-value=2.4 Score=50.73 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~ 589 (716)
+.+....+..+.....+.+.|...+..+.+. ...++.....|+..+.+++.+=+.+-..|++||++--+|-+++..
T Consensus 40 ~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 40 ENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544333322 235667777778888888888888999999999998899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (716)
Q Consensus 590 ~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~ 669 (716)
+|..--|+. ....-|....-..+-+.++++++-.--..+|-+ ++++|++.|.|-+ +|.+|-++.
T Consensus 116 Lk~sQvefE-~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q---leEALesl~~ERe------------qk~~LrkEL 179 (717)
T PF09730_consen 116 LKQSQVEFE-GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ---LEEALESLKSERE------------QKNALRKEL 179 (717)
T ss_pred HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHH
Confidence 887644443 112224333333455666666555444455544 4667777777766 888888888
Q ss_pred HHHHH
Q 005055 670 IVQER 674 (716)
Q Consensus 670 ~~~~~ 674 (716)
..|-.
T Consensus 180 ~~~~~ 184 (717)
T PF09730_consen 180 DQHLN 184 (717)
T ss_pred HHhcC
Confidence 77655
No 266
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.64 E-value=0.019 Score=58.88 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce--EEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG--IWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|++.+.. |..... ..|.| ....... .++..+.+.++||.|.+
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~--~~~~~~--~~t~~~~~~~~~i~-----~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGE--YDDHAY--DASGDDDTYERTVS-----VDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--cCccCc--CCCccccceEEEEE-----ECCEEEEEEEEeCCCcc
Confidence 7899999999999999998654 431111 12222 2222211 23556789999999975
No 267
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=95.62 E-value=0.043 Score=60.05 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=39.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
++=|+|+|.+.+|||+|+|.|.+.. ..+++ |+...+-|+.-+. + ...+.|.||+|+.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~--------~--~~~~~i~D~PGli 216 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVD--------D--GRSFVIADIPGLI 216 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeC--------C--ceEEEEEeCCCcc
Confidence 5679999999999999999999764 22221 2223355665431 1 2568899999983
No 268
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=8.9 Score=47.71 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005055 608 QKAMEDQVCSEIEVLKSR-------STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQ 680 (716)
Q Consensus 608 ~k~~~~~~~~~i~~l~~r-------~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q 680 (716)
.+...+-.++++..|.++ +..+.++|.++++.++.-+-+..+|+-+.+.+= ......++.....++.....+
T Consensus 498 ~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k-~e~~~~~k~l~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 498 ARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK-QELKEKEKELPKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 333344455555555544 555555566666666666666666666665543 233333444444444333333
Q ss_pred hhHHHHH
Q 005055 681 QREDVLR 687 (716)
Q Consensus 681 ~~e~~~~ 687 (716)
...-++|
T Consensus 577 ~~~~~~r 583 (1293)
T KOG0996|consen 577 SQLNKLR 583 (1293)
T ss_pred HHHHHHH
Confidence 3333333
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.60 E-value=0.012 Score=60.71 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.+||||||||.|-|-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999987654
No 270
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=95.60 E-value=0.034 Score=62.82 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=39.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
++-|+++|.+.+|||+|||.|.+.. ..+++ |..| +-|++.+. + ...++|.||+|+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~P-nlG~v~~~--------~--~~~~~laD~PGli 217 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVP-NLGVVETD--------D--GRSFVMADIPGLI 217 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceece-EEEEEEEe--------C--CceEEEEECCCCc
Confidence 5689999999999999999999865 22322 2222 44655442 1 2568999999984
No 271
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.59 E-value=0.021 Score=55.94 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=37.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|++++.+.. |.- .. ..|.|--.. ..+ ..+|..+.+.|+||.|..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~--f~~--~~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHS--FPD--YH-DPTIEDAYK-QQA---RIDNEPALLDILDTAGQA 61 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCC--Cc-CCcccceEE-EEE---EECCEEEEEEEEeCCCch
Confidence 7899999999999999999765 631 11 223342111 111 124666889999999964
No 272
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.58 E-value=0.021 Score=62.12 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=40.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeecc--ccccc----c------CCC-CceeEEEEeCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSA--PLKRT----A------LDG-TEYNLLLLDSE 136 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~--p~~~~----~------~~g-~~~~vvlLDTE 136 (716)
|+|+|.+++|||+|+|+|.+.. +.++ .|..| +.|+-.+.. |..+. . .+| ..+.+-|+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p-~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDP-NVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccc-eeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 6899999999999999999875 3332 23333 557655533 22110 1 123 33679999999
Q ss_pred CC
Q 005055 137 GI 138 (716)
Q Consensus 137 Gl 138 (716)
|+
T Consensus 78 Gl 79 (318)
T cd01899 78 GL 79 (318)
T ss_pred CC
Confidence 98
No 273
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.58 E-value=3.2 Score=42.43 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~ 659 (716)
.++++.-|+..+...+=++.+++++|++-..|.++..+=+|.|++
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455666666666667776666676666666666664
No 274
>PRK13796 GTPase YqeH; Provisional
Probab=95.58 E-value=0.017 Score=64.09 Aligned_cols=55 Identities=31% Similarity=0.376 Sum_probs=35.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcc----ccccCCCcccceE-EeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGF----QVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF----~~g~~~~~~TkGI-Wmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|.++.|||+|+|.|++...|- .+++. -.+|.++ |+ |+ .+| ..|+||+|+-
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~-pGTT~~~~~~---~l----~~~----~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRF-PGTTLDKIEI---PL----DDG----SFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCC-CCccceeEEE---Ec----CCC----cEEEECCCcc
Confidence 46789999999999999999754332 22222 2245553 32 22 122 4789999984
No 275
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=95.52 E-value=0.036 Score=58.96 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=49.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCc-cccccC----------CCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSG-FQVAST----------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~g-F~~g~~----------~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
|+|+|..++|||+|.|.|+..... -.+|.. ..-..+||=+-....... ..++.+.|+||+|...+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHHH
Confidence 789999999999999999843210 011110 011223443332221111 123678999999964321
Q ss_pred cCCcchhHHHHHhhhccceEEEccCCCCchH
Q 005055 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDES 173 (716)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~ 173 (716)
..+.-++...=.-++|......+...
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~~g~~~~ 104 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAVAGVEPQ 104 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECCCCCCHH
Confidence 12344555444456666665555443
No 276
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.52 E-value=0.021 Score=57.99 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|+|+|+.++|||+|+|+++... |.- ....|.|+-+....+. .++..+.+-+.||.|..
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGE--FEK---KYIPTLGVEVHPLKFY---TNCGPICFNVWDTAGQE 69 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCch
Confidence 458999999999999998766433 322 1234667666554442 24556889999999853
No 277
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.52 E-value=0.045 Score=55.71 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~ 95 (716)
|+|+|..++|||+|+++|++..
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998654
No 278
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.51 E-value=0.026 Score=55.24 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=39.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|+|++++.. |.-. -..|.|.-....-+ ..+|..+.+-+.||.|..
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~--f~~~---~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDV--FDKN---YKATIGVDFEMERF---EILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEE---EECCEEEEEEEEeCCChH
Confidence 6799999999999999999875 6321 13355544332211 124566789999999964
No 279
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.50 E-value=5.6 Score=44.67 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005055 556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 635 (716)
Q Consensus 556 k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~ 635 (716)
.+.++.+......|......++.+ ..++.++..+-.+=+++....+..+++...++++++..-++++.++...=++
T Consensus 160 ~~~i~~l~~~~~~l~~~~~~iaae----q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~ 235 (420)
T COG4942 160 AERIDALKATLKQLAAVRAEIAAE----QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESR 235 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445555555544444444444433 3344444444444455666666677777777777777777776666666555
Q ss_pred HHHHHHHHHHHHH
Q 005055 636 AREQALSAQEEVE 648 (716)
Q Consensus 636 ~~~ql~~ak~E~~ 648 (716)
|+..+.++..+++
T Consensus 236 L~~~Ias~e~~aA 248 (420)
T COG4942 236 LKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 280
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.48 E-value=7 Score=45.64 Aligned_cols=118 Identities=23% Similarity=0.222 Sum_probs=74.8
Q ss_pred HHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005055 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645 (716)
Q Consensus 569 l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~---~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~ 645 (716)
.+.+.....+++..-...|++++.|...++..|..+++.+..... ...+....-..+...+-..+..+.+.+++++.
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~ 193 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKL 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677788999999999999999999999999998765433222 22222222223344555555555555555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 005055 646 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 690 (716)
Q Consensus 646 E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~ 690 (716)
...+=. +..+ ++-+..++.+..|++.+++.+.+-..|+.++
T Consensus 194 a~~eAe---ee~~-~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 194 AHIEAE---EERI-EIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1111 2334566778888888888888888888887
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.44 E-value=0.03 Score=61.81 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=40.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeecccccc-----ccCCC-CceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKR-----TALDG-TEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~p~~~-----~~~~g-~~~~vvlLDTEGl~ 139 (716)
.|+|+|.+.+|||||+|.|.|.. -.++ .|+.| ..|+.-+..+-.. ..|.. -...+.|+||+|+-
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p-~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEP-NVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--Ceecccccccccc-eEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 48999999999999999999875 1222 23333 4566665443100 01110 01358999999983
No 282
>CHL00071 tufA elongation factor Tu
Probab=95.42 E-value=0.054 Score=61.03 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCC------ccccc---cCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSS------GFQVA---STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~------gF~~g---~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..|..-|+|+|...+|||+|+|+|++... ++... .+..-..+||=+-....... .+...+.|+||+|.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE---TENRHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc---cCCeEEEEEECCCh
Confidence 34566699999999999999999997531 11100 00111124544433222211 12356889999995
Q ss_pred cccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhH
Q 005055 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (716)
Q Consensus 139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~ 179 (716)
.. -....+.+++..=.-++|......+..++.+.+.
T Consensus 86 ~~-----~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~ 121 (409)
T CHL00071 86 AD-----YVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL 121 (409)
T ss_pred HH-----HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence 31 1233344554433345555555555555555443
No 283
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.41 E-value=0.045 Score=56.53 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=51.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccc---c------CCCcccceEEeeccccccc-------cCCCCceeEEEEeCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVA---S------THRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEG 137 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g---~------~~~~~TkGIWmw~~p~~~~-------~~~g~~~~vvlLDTEG 137 (716)
|+|+|...+|||+|++.|+.....+.-. . ...-..+||=|-+.++... ..++..+.+.|+||+|
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG 82 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPG 82 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCC
Confidence 7999999999999999998654222110 0 0001123433333221110 1235578899999999
Q ss_pred CcccccCCcchhHHHHHhhhccceEEEccCCCCch
Q 005055 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (716)
Q Consensus 138 l~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (716)
...+. .....++...=.-++||.....+..
T Consensus 83 ~~~f~-----~~~~~~l~~aD~~ilVvD~~~g~~~ 112 (222)
T cd01885 83 HVDFS-----SEVTAALRLCDGALVVVDAVEGVCV 112 (222)
T ss_pred ccccH-----HHHHHHHHhcCeeEEEEECCCCCCH
Confidence 64321 2233344433344677776655443
No 284
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.40 E-value=3.4 Score=41.49 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKT 586 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dl---k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~ 586 (716)
...+.++..+....+.+++.+..++.+.....+.-.+.|++.+..| .-.+|....+...-+.+|..|++....+...
T Consensus 45 er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n 124 (205)
T KOG1003|consen 45 ERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN 124 (205)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 3445667777788888999999999999988888889999999988 6677777777788889999999998888887
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 587 VDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 663 (716)
Q Consensus 587 le~~k~e~~e~---~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka 663 (716)
|.+...--..+ .-.|+..|.- +...+-+...|.-.++-+.+.|+++.+-......+-+.||.. ++.
T Consensus 125 lk~l~~~ee~~~q~~d~~e~~ik~-------ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~----~~~ 193 (205)
T KOG1003|consen 125 LKSLSAKEEKLEQKEEKYEEELKE-------LTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEE----AKK 193 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHH----HHH
Confidence 77765543322 2233333322 344444445555555555555555555555555555555543 344
Q ss_pred HHHHHHH
Q 005055 664 ALEKAAI 670 (716)
Q Consensus 664 ~leq~~~ 670 (716)
.|++...
T Consensus 194 eLD~~~~ 200 (205)
T KOG1003|consen 194 ELDETLQ 200 (205)
T ss_pred HHHHHHH
Confidence 5555443
No 285
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.36 E-value=0.02 Score=56.97 Aligned_cols=56 Identities=27% Similarity=0.216 Sum_probs=36.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|..++|||+|+|+|.+.. |.- .. +.|.|.-.... + ..+|..+.+-++||.|.
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~--f~~--~~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~ 57 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH--FVE--TY-DPTIEDSYRKQ-V---VVDGQPCMLEVLDTAGQ 57 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--cC-CCchHhhEEEE-E---EECCEEEEEEEEECCCc
Confidence 6799999999999999998654 532 11 22333222111 1 12455677889999995
No 286
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.35 E-value=0.063 Score=56.98 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-.|+|+|..++|||+|+|.|+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45999999999999999999854
No 287
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.35 E-value=0.017 Score=61.86 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=35.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc-------CCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS-------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~-------~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+..++|..+.|||+|+|+|++.. ...+|. |. -+|.-.=|..-|. +| +++||+|+.++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~rGk-HTTt~~~l~~l~~-----gG-----~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLGRGR-HTTTHVELFPLPG-----GG-----WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCCCCC-CccceEEEEEcCC-----CC-----EEEeCCCCCcc
Confidence 45589999999999999999742 122221 21 1344555543331 23 67899998543
No 288
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.34 E-value=3.5 Score=41.35 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 005055 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (716)
Q Consensus 546 k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~ 603 (716)
+.+++.+.||+...-.+..++..|..+++.+|.+-+++...++.+..+...+....+.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 4567788888777777777777777777777777777776666666655544444433
No 289
>PLN03108 Rab family protein; Provisional
Probab=95.31 E-value=0.026 Score=57.37 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=36.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|++.. |...+ ..|.|+-.....+. .++..+.+-++||.|..
T Consensus 9 ivivG~~gvGKStLi~~l~~~~--~~~~~---~~ti~~~~~~~~i~---~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 9 YIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDNKPIKLQIWDTAGQE 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCCC---CCCccceEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 7899999999999999999765 53321 12333211111111 13445778899999853
No 290
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.30 E-value=0.019 Score=47.87 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=36.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccC-----CCCceeEEEEeC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTAL-----DGTEYNLLLLDS 135 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~-----~g~~~~vvlLDT 135 (716)
||+|+|+.++|||++++.|...-.|..+ ....++|++...+..... .......+++|+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~-----~~i~~~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSV-----VVLDEIVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCE-----EEEeEEEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 5889999999999999998865211111 123448888765543211 112235777887
No 291
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=95.29 E-value=0.064 Score=56.23 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|++++.. |.-. ..|.+..+..+.. ..+|+.+.|-++||.|..
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~--f~~~--y~pTi~d~~~k~~-----~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGR--FEEQ--YTPTIEDFHRKLY-----SIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCC--CCCC--CCCChhHhEEEEE-----EECCEEEEEEEEECCCCh
Confidence 7899999999999999999765 6432 1122211221111 124556788899999964
No 292
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.29 E-value=0.027 Score=54.70 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=36.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++.+.. |.- .. ..|.|..... + ++..+.+.++||.|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~--~~~--~~-~pt~g~~~~~--i-----~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--SLE--SV-VPTTGFNSVA--I-----PTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Ccc--cc-cccCCcceEE--E-----eeCCeEEEEEECCCCc
Confidence 6899999999999999999764 432 11 2355643211 1 2345789999999853
No 293
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.28 E-value=1.9 Score=41.30 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=35.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHH
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKR 599 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r 599 (716)
....+.+.+.++..++.+++..+..+..++..+.|. +.....+..|+.+...+......+.-.|+++..|+..+.+
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da----En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDA----ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555455445555555553 3333333444444444444444444444444444444433
No 294
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.25 E-value=0.032 Score=62.55 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEee------------ccccccccCCCC-ceeEEEEeCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLW------------SAPLKRTALDGT-EYNLLLLDSE 136 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw------------~~p~~~~~~~g~-~~~vvlLDTE 136 (716)
-|+|+|.+.+|||+|+|+|.+.. +.+++ ++...+.|+-.- +.|.....++|. .+.+-|+||.
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 48999999999999999999875 44322 222234565221 122111012222 2568899999
Q ss_pred CC
Q 005055 137 GI 138 (716)
Q Consensus 137 Gl 138 (716)
|+
T Consensus 81 Gl 82 (396)
T PRK09602 81 GL 82 (396)
T ss_pred Cc
Confidence 98
No 295
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=95.23 E-value=0.04 Score=54.50 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=38.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEE--eeccccccccCCCCceeEEEEeCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLW--LWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIW--mw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
++- |.++|..++|||+|+|++.+.. |. ++ ..|.|+- .+..++ .++..+.+-+.||.|.
T Consensus 3 ~~k-v~~vG~~~~GKTsli~~~~~~~--~~--~~--~~t~~~~~~~~~~~~----~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 3 SLH-IVMLGLDSAGKTTVLYRLKFNE--FV--NT--VPTKGFNTEKIKVSL----GNSKGITFHFWDVGGQ 62 (183)
T ss_pred ceE-EEEECCCCCCHHHHHHHHhcCC--cC--Cc--CCccccceeEEEeec----cCCCceEEEEEECCCc
Confidence 344 6788999999999999998754 42 12 2344532 222222 2345578999999995
No 296
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=95.21 E-value=0.024 Score=63.70 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=40.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.++. |+|+|++..|||.|||.|....- .+-+.+-.+|+..-= .+| .++| +.|.|.||-|+-
T Consensus 267 ~gl~-iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaie--a~v---~~~G--~~v~L~DTAGiR 327 (531)
T KOG1191|consen 267 SGLQ-IAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIE--AQV---TVNG--VPVRLSDTAGIR 327 (531)
T ss_pred cCCe-EEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhhe--eEe---ecCC--eEEEEEeccccc
Confidence 4555 88999999999999999998752 222222233443211 112 2466 789999999983
No 297
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.19 E-value=4.6 Score=46.58 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHH
Q 005055 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ----------KAMEDQVCSEIEVLKSRSTAAE 630 (716)
Q Consensus 561 ~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~----------k~~~~~~~~~i~~l~~r~~~~e 630 (716)
.+..++..++.+...+..++..-+-.+-.++.++...+......++.. ......+...+.+++.....++
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 330 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLE 330 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666667777777777777777777777665543321 0112335556666666666777
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 005055 631 ARLAAAREQALSAQEEVE---EWKRKYGVAVREAKAA 664 (716)
Q Consensus 631 erl~~~~~ql~~ak~E~~---~w~~kY~~~~~~~Ka~ 664 (716)
.+++++..++...+++.. ..-.+|..+.++...+
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~ 367 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVN 367 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 777777777666666655 3444666666444333
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.18 E-value=0.031 Score=57.65 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce-EEeeccccccccCCCCceeEEEEeCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEG 137 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG-IWmw~~p~~~~~~~g~~~~vvlLDTEG 137 (716)
.|=.+|+|+|+.++|||+|+|.|++...+-.+ ....| +++|+. + ...+.++||+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-----~~~~g~i~i~~~-------~--~~~i~~vDtPg 92 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-----SDIKGPITVVTG-------K--KRRLTFIECPN 92 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-----ccccccEEEEec-------C--CceEEEEeCCc
Confidence 34467999999999999999999976322111 12334 555431 1 24678999997
No 299
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.18 E-value=3.5 Score=50.65 Aligned_cols=171 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHHH--
Q 005055 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK-----------------RYDDAINDKKKLADDYTSRI-- 566 (716)
Q Consensus 506 ~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k-----------------~lee~i~dlk~~~e~~~~~~-- 566 (716)
...++..+..+.+.+..+..+++.++..++..+...+..+. +.+..+++|++.|+....++
T Consensus 678 ~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 678 VSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 005055 567 --------------------------NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCS 617 (716)
Q Consensus 567 --------------------------~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~ 617 (716)
..|+.+...++-++....+ ..+.....-|++..+.. +...++..+.+..
T Consensus 758 ~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k 835 (1141)
T KOG0018|consen 758 GFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEK 835 (1141)
T ss_pred HhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Q 005055 618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 686 (716)
Q Consensus 618 ~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~ 686 (716)
.|++. ..+|.+- .....-++.|+.+|+..-..++ +..+-|++.|..-+..++.....-..+
T Consensus 836 ~i~e~----~~~e~k~---k~~~~~~~~e~~e~~k~~~~~~-~~~tkl~~~i~~~es~ie~~~~er~~l 896 (1141)
T KOG0018|consen 836 IIAEI----EELEKKN---KSKFEKKEDEINEVKKILRRLV-KELTKLDKEITSIESKIERKESERHNL 896 (1141)
T ss_pred HHhhH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhHHHHHHHHHHHH
No 300
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=95.17 E-value=0.036 Score=53.93 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=36.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |. + . ..|.|+-.... +...+.+.++||.|..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~--~~--~-~-~~T~~~~~~~~-------~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDE--FM--Q-P-IPTIGFNVETV-------EYKNLKFTIWDVGGKH 54 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CC--C-c-CCcCceeEEEE-------EECCEEEEEEECCCCh
Confidence 5699999999999999999864 42 1 1 23556443311 1234789999999964
No 301
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.17 E-value=0.025 Score=54.09 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=41.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++.+.. |.- .-..|.|+-....++.. ++..+.+-+.||.|.+
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE--FPE---NYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--TTS---SSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSG
T ss_pred EEEECCCCCCHHHHHHHHHhhc--ccc---ccccccccccccccccc---cccccccccccccccc
Confidence 6799999999999999998764 642 12336666555554432 3567889999999853
No 302
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.14 E-value=0.069 Score=62.86 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
||+|+|...+|||+|+|+|.|..
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 69999999999999999998764
No 303
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.12 E-value=4.1 Score=40.90 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005055 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 640 (716)
Q Consensus 561 ~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql 640 (716)
+-......+......+++++..+..+|..+++=..+-.|+|++.+-..=-...+ +..+..|.-..+.+|..+.+++
T Consensus 43 E~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~d----LE~~eeraE~~Es~~~eLeEe~ 118 (205)
T KOG1003|consen 43 ESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGE----LERAEERAEAAESQSEELEEDL 118 (205)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444667777778999999999999999999999999999997765443333 4444445556666666666666
Q ss_pred HHHHHHHH
Q 005055 641 LSAQEEVE 648 (716)
Q Consensus 641 ~~ak~E~~ 648 (716)
-...+...
T Consensus 119 ~~~~~nlk 126 (205)
T KOG1003|consen 119 RILDSNLK 126 (205)
T ss_pred HHhHhHHH
Confidence 55555444
No 304
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.12 E-value=2.5 Score=51.44 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=15.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLK 546 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k 546 (716)
.+-++.++..+++++++.+...+.+++
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666655555543
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.11 E-value=0.017 Score=63.14 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=33.2
Q ss_pred CCCeeEEEeCCCCceeeCHHHHHHhhc---cCCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 40 ARPIRLVYCDEKGKFRMDPEAVAALQL---VKEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 40 ~~pi~LI~~d~~~~l~v~~eAl~~L~~---i~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
++.|-+|+++... -++.+-.++.. ..++-.||+|+|++++|||||++.|..
T Consensus 25 a~~it~~e~~~~~---~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 25 ARAITLVESTRPD---HRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhCCCch---hhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456677654311 12334444443 345667999999999999999999763
No 306
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.07 E-value=0.065 Score=55.85 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=49.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCc-ccccc-----CC-----CcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSG-FQVAS-----TH-----RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~g-F~~g~-----~~-----~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
|+|+|..++|||+|.|+|+..... ..+|. ++ ...++|+=+-...... ...++.+.|+||+|...+.
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccchH
Confidence 789999999999999999864311 11111 10 0112332221111110 1224678999999975321
Q ss_pred cCCcchhHHHHHhhhccceEEEccCCCCc
Q 005055 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGID 171 (716)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~ 171 (716)
..+.-++...=.-++|+.....+.
T Consensus 79 -----~~~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 79 -----AEVERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred -----HHHHHHHHHhCeEEEEEeCCCCCC
Confidence 223345555556678888766554
No 307
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=95.07 E-value=0.047 Score=53.26 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|+.++|||+|+++|.+.. |. .. ..|.|+-.+.. .+.++.+.+.||.|.+
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~--~~---~~-~~t~g~~~~~~-------~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQ--SV---TT-IPTVGFNVETV-------TYKNVKFNVWDVGGQD 64 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCC--Cc---cc-cCCcccceEEE-------EECCEEEEEEECCCCH
Confidence 46799999999999999998654 42 11 22455433311 1234789999999964
No 308
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.06 E-value=0.065 Score=63.20 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=57.0
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccc---ccCCCc-----ccceEEeecccccc--ccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTHRP-----CTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~---g~~~~~-----~TkGIWmw~~p~~~--~~~~g~~~~vvlLDTEGl~~ 140 (716)
|-=|+|+|....|||+|+++|+.....+.- +.+.-. .+.||=+-..++.. ...+|..+.+.|+||+|...
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 445899999999999999999865322211 111111 23566544333221 11246668899999999753
Q ss_pred cccCCcchhHHHHHhhhccceEEEccCCCCchHhhhh
Q 005055 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDR 177 (716)
Q Consensus 141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~ 177 (716)
+. ..+.-++...=.-++||.....+..+.+..
T Consensus 83 F~-----~~v~~~l~~aD~aILVvDat~g~~~qt~~~ 114 (595)
T TIGR01393 83 FS-----YEVSRSLAACEGALLLVDAAQGIEAQTLAN 114 (595)
T ss_pred HH-----HHHHHHHHhCCEEEEEecCCCCCCHhHHHH
Confidence 21 122233333333456666655555544443
No 309
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.06 E-value=11 Score=45.32 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHH
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 597 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~ 597 (716)
+.+.++.+..+.+..++..++.+...++.++..+.++++.+++++..+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666666555443
No 310
>PTZ00369 Ras-like protein; Provisional
Probab=95.05 E-value=0.041 Score=54.71 Aligned_cols=57 Identities=23% Similarity=0.175 Sum_probs=35.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|++++++.. |.- ... .|.|--++ ..+. .++..+.+-++||.|..
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~~--~~~--~~~-~t~~~~~~-~~~~---~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQNH--FID--EYD-PTIEDSYR-KQCV---IDEETCLLDILDTAGQE 64 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCc--CcC-CchhhEEE-EEEE---ECCEEEEEEEEeCCCCc
Confidence 6689999999999999999765 421 111 23332221 1111 23445677789999964
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.04 E-value=0.02 Score=64.57 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhh
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
.+-.||.++|++++||||++..|+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999997
No 312
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.03 E-value=0.043 Score=54.33 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=38.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceE-EeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGI-Wmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|++++.+.. |.- ...| |.|. +.. .+ ..++..+.+-+.||.|..
T Consensus 4 iv~vG~~~vGKTsli~~~~~~~--f~~--~~~~-t~~~~~~~--~~---~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDC--YPE--TYVP-TVFENYTA--SF---EIDEQRIELSLWDTSGSP 60 (178)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCC--CcCC-ceEEEEEE--EE---EECCEEEEEEEEECCCch
Confidence 7899999999999999999765 642 2223 3343 322 22 124567889999999953
No 313
>PRK10698 phage shock protein PspA; Provisional
Probab=95.03 E-value=3.7 Score=42.52 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLT--------KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 656 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~--------~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~ 656 (716)
.+++..+..+.+|.++=+..|+ .-...+..+...++.|+......++.+..+..++...+..+.+++.|...
T Consensus 59 r~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 59 RRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555554444422 11222344556666666666677777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 005055 657 AVREAKAALE 666 (716)
Q Consensus 657 ~~~~~Ka~le 666 (716)
++...+++--
T Consensus 139 L~aR~~~A~a 148 (222)
T PRK10698 139 LMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHH
Confidence 7765555443
No 314
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.01 E-value=0.038 Score=53.76 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=35.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
|.|+|+.++|||+|+|+|.+. |... ...|.|.=... +. ...+.+.++||.|.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~---~~~~---~~~t~g~~~~~--~~-----~~~~~~~i~D~~G~ 53 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE---IPKK---VAPTVGFTPTK--LR-----LDKYEVCIFDLGGG 53 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC---CCcc---ccCcccceEEE--EE-----ECCEEEEEEECCCc
Confidence 689999999999999999875 4221 12355543221 21 12478899999995
No 315
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.01 E-value=6.6 Score=42.94 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEV 621 (716)
Q Consensus 542 ~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~ 621 (716)
..+...+++++..|+.....+....+.+..-.-.+.++...+..++..++.-..+.. ..=+..++.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~--------------~~D~~eL~~ 213 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE--------------SCDQEELEA 213 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hcCHHHHHH
Confidence 333344444444444444444444444444444444444444444444444333311 111234444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005055 622 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678 (716)
Q Consensus 622 l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~ 678 (716)
++.++....+.+.+.+..+...+.+...++.+-+.+- ..|..+..+|+..++..++
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~-~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE-EQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555544444 5566666666666555543
No 316
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.96 E-value=0.04 Score=58.91 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred EEEeeCCCCCChhHHHHHhhC----CCCcccccc--CCCcccce-EEeeccccccccCCCCceeEEEEeCCCCcccccCC
Q 005055 73 VVSVCGRARQGKSFILNQLLG----RSSGFQVAS--THRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg----~~~gF~~g~--~~~~~TkG-IWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~ 145 (716)
-|=|+|-+..|||.|+|.+.. ....-.+|+ |+-.-+.+ |-+... ..+.++||+|...++-..
T Consensus 145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-----------p~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-----------PPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-----------CceEEecCCCcCCCCCCC
Confidence 467999999999999998753 222234443 23233444 222222 358899999998776555
Q ss_pred cchhHHHHHhhhccce
Q 005055 146 TYSTQIFSLAVLLSSM 161 (716)
Q Consensus 146 ~~d~~IFaLa~LLSS~ 161 (716)
..+..=.||+.++++.
T Consensus 214 ~e~~lKLAL~g~Vkd~ 229 (335)
T KOG2485|consen 214 VEDGLKLALCGLVKDH 229 (335)
T ss_pred HHHhhhhhhccccccc
Confidence 5555444666555554
No 317
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.96 E-value=0.075 Score=62.50 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.||+|+|....|||+|+|+|.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~ 28 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSA 28 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 369999999999999999999874
No 318
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.95 E-value=0.057 Score=51.64 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=34.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|+|+|.+.. |. . + ..|.|.-+.. + ++.++.+-++||+|..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~--~~-~-~--~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGE--VV-T-T--IPTIGFNVET--V-----TYKNLKFQVWDLGGQT 54 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCC--Cc-C-c--CCccCcCeEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999997543 32 1 1 1233432211 1 1234678999999964
No 319
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.89 E-value=0.042 Score=66.22 Aligned_cols=27 Identities=44% Similarity=0.866 Sum_probs=23.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+..|+|+|.+.+|||+|+|+|+|..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~ 299 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR 299 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345679999999999999999999875
No 320
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.89 E-value=0.11 Score=58.31 Aligned_cols=100 Identities=21% Similarity=0.354 Sum_probs=55.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCc--ccc-ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc---cccC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSG--FQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA---YDQT 144 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~g--F~~-g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~---~~~~ 144 (716)
..=|||+|.+..|||+|+|.|+|.... .++ |.|+.+ -..-|-| +|+ .++|+||=|+-- +..+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~-I~~~~e~---------~~~--~~~liDTAGiRrk~ki~e~ 245 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS-IDIEFER---------DGR--KYVLIDTAGIRRKGKITES 245 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc-eeeeEEE---------CCe--EEEEEECCCCCcccccccc
Confidence 446999999999999999999997521 122 222222 1223444 343 478899999831 1111
Q ss_pred -Ccch--hHHHHHhhhccceEEEccCCCCchHhhhhhHHHH
Q 005055 145 -GTYS--TQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT 182 (716)
Q Consensus 145 -~~~d--~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~ 182 (716)
..+. -.+=|+.-.=.-.+|.+-...+.+++..-+.++.
T Consensus 246 ~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~ 286 (444)
T COG1160 246 VEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE 286 (444)
T ss_pred eEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH
Confidence 1111 1122222111224566666677777776555554
No 321
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=94.88 E-value=5.9 Score=41.50 Aligned_cols=106 Identities=16% Similarity=0.298 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhH
Q 005055 502 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY----LKRYDDAINDKKKLAD-DYTSRINNLQGENISL 576 (716)
Q Consensus 502 ~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~----~k~lee~i~dlk~~~e-~~~~~~~~l~~k~~~l 576 (716)
...+-+....-+..+..+...+.+.+..|.+.++..-+.-.+. ++-++..|+.+...++ .+..+...++..+..|
T Consensus 18 ~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L 97 (247)
T PF06705_consen 18 ESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSL 97 (247)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344344445555666666666666666666655444443 3355666666644444 4444557888888888
Q ss_pred HHHHHhhHHhHHHHHHHHHH-HHHHHHHHHHH
Q 005055 577 REKSSSLSKTVDSLKNEISD-WKRKYDQVLTK 607 (716)
Q Consensus 577 e~~~~~~~~~le~~k~e~~e-~~r~y~~~i~~ 607 (716)
.+++..+.+.+..-+.+..+ +...+..+..+
T Consensus 98 ~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~ 129 (247)
T PF06705_consen 98 NDRIEALEEEIQEEKEERPQDIEELNQELVRE 129 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888877665555332 44444444333
No 322
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.87 E-value=0.046 Score=54.39 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=37.3
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++++.. |.-. . ..|.|.-.... + ..++..+.+.+.||.|..
T Consensus 3 ivivG~~~vGKTsli~~~~~~~--~~~~--~-~~t~~~~~~~~-i---~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGY--FPQV--Y-EPTVFENYVHD-I---FVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCc--c-CCcceeeeEEE-E---EECCEEEEEEEEECCCCh
Confidence 6799999999999999999765 5321 1 12333222111 1 124556789999999964
No 323
>PRK10218 GTP-binding protein; Provisional
Probab=94.86 E-value=0.11 Score=61.36 Aligned_cols=93 Identities=13% Similarity=0.287 Sum_probs=56.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccC---------CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~---------~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.|--|+|+|...+|||+|+++|++....|.-... ..-.+.||-+-...... +..++.+.++||+|...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~d 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHAD 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcch
Confidence 3566999999999999999999986655543211 12346788776543322 12347889999999754
Q ss_pred cccCCcchhHHHHHhhhccceEEEccCCCC
Q 005055 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGI 170 (716)
Q Consensus 141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i 170 (716)
+.. .+..++...=.=++||+....+
T Consensus 81 f~~-----~v~~~l~~aDg~ILVVDa~~G~ 105 (607)
T PRK10218 81 FGG-----EVERVMSMVDSVLLVVDAFDGP 105 (607)
T ss_pred hHH-----HHHHHHHhCCEEEEEEecccCc
Confidence 321 2333333323334566654443
No 324
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=94.85 E-value=3.4 Score=40.53 Aligned_cols=65 Identities=20% Similarity=0.381 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE 620 (716)
Q Consensus 556 k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~ 620 (716)
+....++.++++.|+..++.|+.++..+.++...++..-.+|+++|..+-.....+-..+...+.
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ve 152 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVE 152 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555556655666666666665555444444444443
No 325
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=5.5 Score=45.60 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 005055 524 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (716)
Q Consensus 524 e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~ 603 (716)
+..+++|+.+-+--++.+.+...+|+....+|+++++.+....+.-+.....+.+..++|......
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk-------------- 377 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK-------------- 377 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------
Confidence 578889998888888887777777777777766666655544332222222222222222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhH
Q 005055 604 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRE 683 (716)
Q Consensus 604 ~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e 683 (716)
..+.+.+++=-+-+-.|.|..+++||-.|..=..+=+-.-+ +.+..-.+|++++.|+..+.-+|.-+
T Consensus 378 -----------~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe--~~d~i~~le~e~~~y~de~~kaqaev 444 (654)
T KOG4809|consen 378 -----------RDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPE--FADQIKQLEKEASYYRDECGKAQAEV 444 (654)
T ss_pred -----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111222234455555554444432221111111 11455678999999999999999988
Q ss_pred HHHHHHHHH
Q 005055 684 DVLREEFSS 692 (716)
Q Consensus 684 ~~~~~~~~~ 692 (716)
|.+=+=++.
T Consensus 445 drlLeilke 453 (654)
T KOG4809|consen 445 DRLLEILKE 453 (654)
T ss_pred HHHHHHHHH
Confidence 887654443
No 326
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.80 E-value=0.097 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-|+|+|..++|||+|+..|.|.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999876
No 327
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.78 E-value=0.063 Score=52.38 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=41.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+|.=|.|+|..++|||+|+|++++.. |.+.. ..| |.|.-.....+ ..+|..+.+.+.||-|-.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~~-~~~-T~~~~~~~~~~---~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLNA-YSP-TIKPRYAVNTV---EVYGQEKYLILREVGEDE 65 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCccc-CCC-ccCcceEEEEE---EECCeEEEEEEEecCCcc
Confidence 356778999999999999999999876 75221 122 33321111111 124556778888998753
No 328
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=6.6 Score=41.52 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~ 589 (716)
++++..+......++.+++.|-.++++..+. .++.++.|.+.+.++..+..+|..+... +.+|-..+.+++++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k----~~~~~~~i~~~~~eik~l~~eI~~~~~~---I~~r~~~l~~raRA 109 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSK----IDELQKEIDQSKAEIKKLQKEIAELKEN---IVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4444444444444444444444444333222 1233344444444444444444443332 22334455555555
Q ss_pred HHH
Q 005055 590 LKN 592 (716)
Q Consensus 590 ~k~ 592 (716)
...
T Consensus 110 mq~ 112 (265)
T COG3883 110 MQV 112 (265)
T ss_pred HHH
Confidence 544
No 329
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.76 E-value=0.055 Score=53.73 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=41.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..+.|||.|++++++.. |.- .-..|.|+-.....+. .+|..+.+-+.||.|..
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~--f~~---~~~~T~g~~~~~~~i~---~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGE--FDE---DYIQTLGVNFMEKTIS---IRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6789999999999999999765 632 1234677654433332 24566889999999853
No 330
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=94.76 E-value=0.063 Score=53.25 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=36.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|+|+|+.++|||+|+|+|.+.. |.- ...+ |.+..... ++. .++..+.+.++||.|...
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~--~~~--~~~~-t~~~~~~~-~~~---~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGE--FPE--EYHP-TVFENYVT-DCR---VDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc--ccCC-cccceEEE-EEE---ECCEEEEEEEEECCCChh
Confidence 37899999999999999998543 421 1112 33332221 221 134456788999999643
No 331
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.76 E-value=0.15 Score=50.29 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=43.9
Q ss_pred HhhccC--CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 63 ALQLVK--EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 63 ~L~~i~--~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
+|+.+. .+=.=|.|+|+.++|||+|+++|.+.. +.. + ..|.|.=+...++ .++.+.+.|..|-
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~--~~~---~-~pT~g~~~~~i~~-------~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGE--ISE---T-IPTIGFNIEEIKY-------KGYSLTIWDLGGQ 68 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSS--EEE---E-EEESSEEEEEEEE-------TTEEEEEEEESSS
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHHHHhhhcc--ccc---c-Ccccccccceeee-------CcEEEEEEecccc
Confidence 444432 344457899999999999999998653 221 2 2377888776654 2378899999984
No 332
>PRK12736 elongation factor Tu; Reviewed
Probab=94.75 E-value=0.077 Score=59.45 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCC--------cccccc-CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~--------gF~~g~-~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|..-|+|+|...+|||+|++.|++... ++.+.. ...-..+|+=+-....... .....+.|+||+|..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~---~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE---TEKRHYAHVDCPGHA 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec---CCCcEEEEEECCCHH
Confidence 4555699999999999999999997421 111000 0011123332222211111 123467899999953
Q ss_pred ccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHH
Q 005055 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (716)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (716)
.+ ....+.+++..=.-++|+.....+..++.+++.+
T Consensus 87 ~f-----~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~ 122 (394)
T PRK12736 87 DY-----VKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred HH-----HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH
Confidence 11 1233445444344466777665566666555544
No 333
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.74 E-value=0.06 Score=53.75 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=31.7
Q ss_pred eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 56 v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
++++..++|...-.+=.+|.|+|+.++|||+|++.|+|.-
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3677888887543334578999999999999999999764
No 334
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.74 E-value=0.0084 Score=73.46 Aligned_cols=138 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK---YDQV-------LTKQKAMEDQVC 616 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~---y~~~-------i~~~k~~~~~~~ 616 (716)
.++..+.+++.++++....++.|......++.+.+.+..+|+..+.....+.+. ++.. ++.-.+.+..+.
T Consensus 184 ~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~ 263 (859)
T PF01576_consen 184 QLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALE 263 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhH
Confidence 455666666555555555555555555555555555555554444444333331 1111 111222223333
Q ss_pred HHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHhh
Q 005055 617 SEIEVLKS-------RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR-------EAKAALEKAAIVQERTSKEMQQR 682 (716)
Q Consensus 617 ~~i~~l~~-------r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~-------~~Ka~leq~~~~~~~~~e~~q~~ 682 (716)
+.+..++. .+..-++-.+.+..++..+..|+..|+.||+.-.. +.|-.|++.+.-....+++++.+
T Consensus 264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~ 343 (859)
T PF01576_consen 264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAK 343 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 33334445667788888999999999999998652 23334444444444444444444
Q ss_pred HH
Q 005055 683 ED 684 (716)
Q Consensus 683 e~ 684 (716)
-.
T Consensus 344 ~~ 345 (859)
T PF01576_consen 344 VS 345 (859)
T ss_dssp --
T ss_pred HH
Confidence 33
No 335
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=94.72 E-value=0.052 Score=55.64 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=40.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+-.=|.|+|..++|||+|+++++... |.-. ...|.|+-.+...+. .++..+.+-++||.|...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~~---~~~tig~~~~~~~~~---~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---YEPTIGVEVHPLDFF---TNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--CCCc---cCCccceeEEEEEEE---ECCeEEEEEEEECCCchh
Confidence 33458899999999999999987654 4321 123455433322121 134457899999999643
No 336
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.72 E-value=5.8 Score=40.65 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKS 580 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~ 580 (716)
+++.|.+++..+-...+....++.++..++..+
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~ 67 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAEEEA 67 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443334434333333333333333333
No 337
>PRK12735 elongation factor Tu; Reviewed
Probab=94.71 E-value=0.09 Score=58.96 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|...|+|+|...+|||+|+|.|++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHh
Confidence 56667999999999999999999973
No 338
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.71 E-value=6.3 Score=40.97 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 642 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ 642 (716)
.++-.+.+.|++..+..+.. +...-+|.|+.++.-++.-..+-...-.+.++++|+..+-||.+=|+.+|+.
T Consensus 87 ~q~y~q~s~Leddlsqt~ai----keql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 87 VQFYQQESQLEDDLSQTHAI----KEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444555555554443333 3333344455555544443334444445566666666666666666666544
No 339
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=94.70 E-value=0.055 Score=52.69 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++++.. |.. ...|++..++-+. +. .++..+.+-++||.|..
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~~---~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNG--YPT--EYVPTAFDNFSVV--VL---VDGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CCCCceeeeeeEE--EE---ECCEEEEEEEEECCCCh
Confidence 6899999999999999998754 532 2223332333222 21 13555788999999964
No 340
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.68 E-value=0.063 Score=52.79 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=38.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|++++.+.. |.- ...| |.|.-... .+ ..++..+.+.+.||.|..
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~~--f~~--~~~p-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNK--FPS--EYVP-TVFDNYAV-TV---MIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCC-ceeeeeEE-EE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 631 1223 44432221 11 124556889999999964
No 341
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.68 E-value=0.062 Score=54.47 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=35.1
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.++|+.++|||+|+++|.+.. |.-..+......+.|. .+. .+....+.|+||+|..
T Consensus 3 vll~G~~~sGKTsL~~~l~~~~--~~~t~~s~~~~~~~~~--~~~-----~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTTGK--YRSTVTSIEPNVATFI--LNS-----EGKGKKFRLVDVPGHP 59 (203)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCCccCcEeecceEEE--eec-----CCCCceEEEEECCCCH
Confidence 7899999999999999999764 3221111111222222 111 1234678899999964
No 342
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=13 Score=44.44 Aligned_cols=207 Identities=15% Similarity=0.125 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005055 503 KRLIDQIGSERSSLM-LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS 581 (716)
Q Consensus 503 k~l~~~i~~e~~~l~-~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~ 581 (716)
+++..-...++++.+ +..+..+..++.+....+++++.+.... ++-..+.-.-..++++..++..|-.+.++-+++.=
T Consensus 407 q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nf 485 (698)
T KOG0978|consen 407 QRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK-CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNF 485 (698)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333344443 3333344444444444444444444333 33333333355566666666666666666666665
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 005055 582 SLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ---ALSAQEEVEEWKRKYG 655 (716)
Q Consensus 582 ~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~q---l~~ak~E~~~w~~kY~ 655 (716)
-+......+.+..--++..+.-+ +...+...+.+.-.|..++-+..-+....+.+..+ +..+.+....=-.+|.
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444443 33333333334444443433322222222222222 2222222222223677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH-HHHHHHHHHHhhhhhhhh
Q 005055 656 VAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS-TLAEKVLSYLSRSLSRAR 710 (716)
Q Consensus 656 ~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 710 (716)
..+..-+..++.-.+.++.+-.+++..+.++.-+-.. .=.+=|+.-|.|-|+|-+
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777778888888888888888888888888766443 445567777887777654
No 343
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=94.65 E-value=0.062 Score=52.79 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=37.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+.++++.. |.- ...|.+...+.+. + ..++..+.+.++||.|.+
T Consensus 4 i~iiG~~~vGKSsli~~~~~~~--f~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNA--FPG--EYIPTVFDNYSAN--V---MVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC--cCCCcceeeeEEE--E---EECCEEEEEEEEECCCch
Confidence 6899999999999999998754 531 1123222222221 1 124666889999999964
No 344
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.64 E-value=0.029 Score=60.13 Aligned_cols=57 Identities=30% Similarity=0.388 Sum_probs=42.2
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC-----CccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~-----~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
..++.||||+|-+.+|||+|+|+|.+.. .=|. |-.|+++-.-| |+| ..++|-||=||
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA---TLDpT~h~a~L---------psg--~~vlltDTvGF 236 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA---TLDPTLHSAHL---------PSG--NFVLLTDTVGF 236 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhe---eccchhhhccC---------CCC--cEEEEeechhh
Confidence 3588999999999999999999998542 2243 44555554433 556 46899999997
No 345
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.57 E-value=0.049 Score=53.99 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++.... |. +..| |.|.-.. ++ +...+.+.|.||.|.+
T Consensus 20 v~lvG~~~vGKTsli~~~~~~~--~~---~~~~-T~~~~~~--~~-----~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLGE--VV---TTIP-TIGFNVE--TV-----EYKNLKFTMWDVGGQD 72 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--cc---ccCC-ccccceE--EE-----EECCEEEEEEECCCCH
Confidence 7788999999999999996443 42 1223 5564332 11 1234789999999953
No 346
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.56 E-value=3.4 Score=48.09 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHHHHhhhH
Q 005055 562 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS---E-----------IEVLKSRST 627 (716)
Q Consensus 562 ~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~---~-----------i~~l~~r~~ 627 (716)
....+..+..+...+.+.+..+.-.+++.+.+..+|+.+-...++++-+..+.|.+ . +..|+..+.
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~ 284 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERD 284 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHH
Confidence 44456667778888888899999999999999999998888877776666666655 1 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005055 628 AAEARLAAAREQALSAQEE 646 (716)
Q Consensus 628 ~~eerl~~~~~ql~~ak~E 646 (716)
.+.+.+..++.|++..+.|
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555554333333
No 347
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.54 E-value=14 Score=44.21 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcccCC-CCC--hHHHHHHHHHHHHHHHHHhhh
Q 005055 357 RAYDSATETYMSTFDRSK-PPE--EVALGEAHEAAVQKALAVYNA 398 (716)
Q Consensus 357 ~a~~~A~~~Y~~~m~~~~-p~~--e~eL~~~H~~~~~~Al~~F~~ 398 (716)
.++++++.-|.....+.. -++ ..++.....+.-.++=++|+.
T Consensus 123 q~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~ 167 (1265)
T KOG0976|consen 123 QKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI 167 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 366777777776655432 111 123333334444445555654
No 348
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.53 E-value=3.5 Score=44.91 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLR----EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le----~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r 625 (716)
+.+-++++..+.+..+.++|+.-...++ +....++..|.....+++..+++.++. +..-+.+...|++...+
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~----~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL----EEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444432 234444444444444444444443332 22223344444444444
Q ss_pred hHHHHHHHHHHHHH
Q 005055 626 STAAEARLAAAREQ 639 (716)
Q Consensus 626 ~~~~eerl~~~~~q 639 (716)
.+.+++.+++++..
T Consensus 248 k~e~~~~I~~ae~~ 261 (312)
T smart00787 248 KSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 349
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=94.50 E-value=0.067 Score=54.34 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=40.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|++++.... |.- ..+.|-|+-.....+. .+|..+.+-+.||.|..
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--f~~---~~~~Ti~~~~~~~~i~---~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--FCE---ACKSGVGVDFKIKTVE---LRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CCC---cCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6799999999999999998765 632 1234555543332222 24566889999999953
No 350
>PRK05433 GTP-binding protein LepA; Provisional
Probab=94.45 E-value=0.11 Score=61.38 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=58.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccc---ccCC-----CcccceEEeeccccc--cccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTH-----RPCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~---g~~~-----~~~TkGIWmw~~p~~--~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+--|+|+|....|||+|+++|+.....+.- +.+. .-.+.||=+....+. ...++|+.+.+-|+||+|..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 445789999999999999999864322211 1111 012345544432221 111356678899999999754
Q ss_pred cccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
+. ..+.-++...=.-++|+.....+..+.+..+
T Consensus 87 F~-----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~ 119 (600)
T PRK05433 87 FS-----YEVSRSLAACEGALLVVDASQGVEAQTLANV 119 (600)
T ss_pred HH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 32 1122234443345677777666665555443
No 351
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.42 E-value=3.7 Score=49.59 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRST 627 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~ 627 (716)
+++.+.+++...+.++.++.....+-..|..|+..+...+....-..++.+|++..-+...+..-..++.+|+.++.+..
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666667777777777777776666667777777766655543334445555554444443
Q ss_pred H
Q 005055 628 A 628 (716)
Q Consensus 628 ~ 628 (716)
.
T Consensus 664 ~ 664 (717)
T PF10168_consen 664 Y 664 (717)
T ss_pred H
Confidence 3
No 352
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.40 E-value=0.087 Score=53.58 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=39.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEee--ccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW--SAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw--~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.++|..++|||.|++++.+.. |.-. ...|.|.=+. ...+....+++..+.+-+.||.|..
T Consensus 3 IvlvGd~gVGKTSLi~~~~~~~--f~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ--VLGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 7799999999999999999875 5321 1235552221 1122111234567889999999953
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.37 E-value=0.056 Score=52.27 Aligned_cols=40 Identities=35% Similarity=0.643 Sum_probs=32.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCC-ccccccCCCcccceEEeecccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSS-GFQVASTHRPCTKGLWLWSAPL 118 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~-gF~~g~~~~~~TkGIWmw~~p~ 118 (716)
-||++.||.++|||||+..+.|.-. -| +||--||+-...+
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F-------~~~G~~~l~~~~l 69 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQF-------SCTGELWLNEQRL 69 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCc-------ceeeEEEECCeec
Confidence 3799999999999999999998753 25 5788899876544
No 354
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.37 E-value=0.029 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
||.|+|+++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 355
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.068 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 356
>COG2262 HflX GTPases [General function prediction only]
Probab=94.29 E-value=0.059 Score=59.62 Aligned_cols=56 Identities=34% Similarity=0.492 Sum_probs=45.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC-----CccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~-----~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.++-.||++|-+.+|||+|+|.|.|.. .=| .|-.|+|+-|-+++ | ..++|-||=||
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF---ATLdpttR~~~l~~---------g--~~vlLtDTVGF 250 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF---ATLDPTTRRIELGD---------G--RKVLLTDTVGF 250 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccc---ccccCceeEEEeCC---------C--ceEEEecCccC
Confidence 588899999999999999999999753 235 46678899888764 2 35899999997
No 357
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.23 E-value=0.05 Score=54.98 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 358
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.23 E-value=18 Score=44.13 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005055 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE 638 (716)
Q Consensus 559 ~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ 638 (716)
++.+.++...+..-.+.++.++.......++++....+.+-....+... ...|..+|..-+.-+..+..+|.++++
T Consensus 633 L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K----i~~Le~Ele~er~~~~e~~~kc~~Le~ 708 (769)
T PF05911_consen 633 LEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK----ISSLEEELEKERALSEELEAKCRELEE 708 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 3333344444444444444444444444444444433333333333222 344666666666678888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005055 639 QALSAQEEVEEWKRK 653 (716)
Q Consensus 639 ql~~ak~E~~~w~~k 653 (716)
++...+.+...|.-.
T Consensus 709 el~r~~~~~~~~~~~ 723 (769)
T PF05911_consen 709 ELERMKKEESLQQLA 723 (769)
T ss_pred HHHhhhcccchhhcc
Confidence 999988888777553
No 359
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.23 E-value=0.036 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+||.++|||+|++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999976
No 360
>PLN03126 Elongation factor Tu; Provisional
Probab=94.22 E-value=0.15 Score=58.68 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=56.3
Q ss_pred cCCCEEEEEeeCCCCCChhHHHHHhhCCCC--------cccccc-CCCcccceEEeeccccccccCCCCceeEEEEeCCC
Q 005055 67 VKEPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (716)
Q Consensus 67 i~~pV~VVsV~G~~rtGKS~LlN~llg~~~--------gF~~g~-~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEG 137 (716)
...|..-|+|+|...+|||+|+|+|++... ++.... +.+-..+||=+-....... ..+..+.|+||+|
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPG 153 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPG 153 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCC
Confidence 456788899999999999999999996421 111111 1122345664432211111 1224678899999
Q ss_pred CcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 138 l~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
...+ ....+.+++..=.-++|+.....+..+..+++
T Consensus 154 h~~f-----~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~ 189 (478)
T PLN03126 154 HADY-----VKNMITGAAQMDGAILVVSGADGPMPQTKEHI 189 (478)
T ss_pred HHHH-----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 5321 12334455433334566665544544444433
No 361
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.21 E-value=3.9 Score=48.32 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005055 617 SEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (716)
Q Consensus 617 ~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~ 647 (716)
..|+.|+.-+...++|+..|..|-+..+...
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444455555555555544444433
No 362
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.20 E-value=2.4 Score=39.68 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005055 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE 638 (716)
Q Consensus 559 ~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ 638 (716)
++.+.+.+..++.++..+.+++..+..+-+.+..|+..+...-++.-. ..+.-..+..++++++.|..++=+-+.+=.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 344444444445555555555555555555555555444444444311 1122233444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005055 639 QALSAQEEVEEWKRKYGVA 657 (716)
Q Consensus 639 ql~~ak~E~~~w~~kY~~~ 657 (716)
+.+..+.++.+-|.=|...
T Consensus 97 ~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 363
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.19 E-value=0.074 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999874
No 364
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.18 E-value=0.054 Score=59.51 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=36.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce-EEeeccccccccCCCCceeEEE
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLL 132 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG-IWmw~~p~~~~~~~g~~~~vvl 132 (716)
-+++++||.++||||||..|+|-. +.|.| |++-+.++..-.|....+.+||
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe----------~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE----------QPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----------CCCCceEEECCEECCCCChhhcccceee
Confidence 479999999999999999999854 34555 7776665544444444455554
No 365
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.17 E-value=0.07 Score=63.48 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.++. |+|+|...+|||||+|+|+...
T Consensus 23 ~~~~-i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 23 SLLR-FITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred CeeE-EEEECCCCCChHHHHHHHHHHh
Confidence 4565 6699999999999999999654
No 366
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=94.17 E-value=0.13 Score=60.47 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+++|....|||+|+|.|.|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~ 24 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA 24 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999999853
No 367
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.16 E-value=15 Score=44.21 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005055 568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (716)
Q Consensus 568 ~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~ 647 (716)
.|+.++.....++..+...|..++.+..+...+|.+....-+.....+..++..++..+..-++++..++..+..+..-+
T Consensus 356 iLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 356 ILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554443333333344444444444433333445555555555444444
Q ss_pred H
Q 005055 648 E 648 (716)
Q Consensus 648 ~ 648 (716)
.
T Consensus 436 ~ 436 (717)
T PF09730_consen 436 G 436 (717)
T ss_pred H
Confidence 4
No 368
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.15 E-value=10 Score=41.20 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005055 500 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLK----KQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENIS 575 (716)
Q Consensus 500 ~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~----k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~ 575 (716)
+..+.-.++....+..|+.=|+.++..-..++ +..++.+..-.++...|+..|.|+...+++....+..+......
T Consensus 60 ~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~ 139 (309)
T PF09728_consen 60 DQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEE 139 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 005055 576 LREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-------RLAAAREQALSAQEEVE 648 (716)
Q Consensus 576 le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~ee-------rl~~~~~ql~~ak~E~~ 648 (716)
|.+++..+.+|.+.-+.+.....+.-+--++=..+--+......+....+.....+ ++..+..+-...+....
T Consensus 140 L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~ 219 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLN 219 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Q 005055 649 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE 689 (716)
Q Consensus 649 ~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~ 689 (716)
-|-.||+..- ++=+-=...-.+|++=++.+..+=+.|..|
T Consensus 220 ~Y~~Kf~efq-~tL~kSNe~F~tfk~Emekm~Kk~kklEKE 259 (309)
T PF09728_consen 220 LYSEKFEEFQ-DTLNKSNEVFETFKKEMEKMSKKIKKLEKE 259 (309)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 369
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.14 E-value=20 Score=46.70 Aligned_cols=29 Identities=0% Similarity=0.060 Sum_probs=18.5
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005055 579 KSSSLSKTVDSLKNEISDWKRKYDQVLTK 607 (716)
Q Consensus 579 ~~~~~~~~le~~k~e~~e~~r~y~~~i~~ 607 (716)
.+......|+.......+|...|++++.-
T Consensus 845 ~l~~~~~aL~~y~~~l~~l~~~~~~L~~A 873 (1353)
T TIGR02680 845 ALEAVGLALKRFGDHLHTLEVAVRELRHA 873 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666667777777777776543
No 370
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.13 E-value=0.047 Score=58.82 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce-EEeecccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPL 118 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG-IWmw~~p~ 118 (716)
+++|+|+.++||||||+.|+|.. +.|.| ||+++.++
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~----------~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYL----------PPDSGSVQVCGEDV 66 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------CCCceEEEECCEEc
Confidence 79999999999999999999874 12344 77777654
No 371
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.11 E-value=3.6 Score=45.47 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=16.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 519 KYRSIEDNMKLLKKQLEDSERYKSEYLK 546 (716)
Q Consensus 519 k~~s~e~e~~~l~k~~e~~~~~~~~~~k 546 (716)
..+-+++++..+++++++.+....++++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555544
No 372
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.10 E-value=0.053 Score=63.05 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=37.1
Q ss_pred CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 52 ~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..|-+--.|+++|..-+.++.||+|+|+.++|||||++.|.+.
T Consensus 46 ~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 46 KGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred cchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4577777888888877777889999999999999999999875
No 373
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.09 E-value=0.21 Score=60.09 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..|--|+|+|...+|||||+|+|++.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 35667999999999999999999854
No 374
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.06 E-value=0.098 Score=52.50 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=40.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||+|++++.+.. |.- ..+.|.|+-+....+. .++..+.+-|.||.|.+
T Consensus 8 KivviG~~~vGKTsll~~~~~~~--~~~---~~~~t~~~~~~~~~i~---~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGS--TES---PYGYNMGIDYKTTTIL---LDGRRVKLQLWDTSGQG 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 36699999999999999998754 531 1123555544333332 24667889999999964
No 375
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=11 Score=43.35 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=81.8
Q ss_pred HHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005055 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV-----------LTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 565 ~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~-----------i~~~k~~~~~~~~~i~~l~~r~~~~eerl 633 (716)
++..|+.+|.+|+..+...+..||.++.-..++....+.. |+.--+-...|-.+|.+| |..|
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~el-------eneL 116 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILEL-------ENEL 116 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHH-------HHHH
Confidence 4467888888888888888888888887777776554433 443333344555555544 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005055 634 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVLSYLSRSLS 707 (716)
Q Consensus 634 ~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~~~~~~~~~ 707 (716)
.-++-.+...+.|.+..-.+.+.+- +.+++.|-.---.+--++++.-||--|=.|.+.. +-|++-|-.-.|
T Consensus 117 Kq~r~el~~~q~E~erl~~~~sd~~-e~~~~~E~qR~rlr~elKe~KfRE~RllseYSEL--EEENIsLQKqVs 187 (772)
T KOG0999|consen 117 KQLRQELTNVQEENERLEKVHSDLK-ESNAAVEDQRRRLRDELKEYKFREARLLSEYSEL--EEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHH
Confidence 4555555555555666666666666 5666666666666666777777777776666543 224444443333
No 376
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.03 E-value=0.092 Score=52.99 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=39.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
.=|.|+|+.++|||+|+|+|.+.. |.-+ .+.|.|.-....-. .+++..+.+.++||-|...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~--~~~~---~~~t~~~~~~~~~~---~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE--FPEG---YPPTIGNLDPAKTI---EPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc--Cccc---CCCceeeeeEEEEE---EeCCCEEEEEeecCCCHHHH
Confidence 447899999999999999999876 4321 12333433322211 11222577899999997543
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.03 E-value=0.038 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||+|++.|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 78999999999999999999875
No 378
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.02 E-value=0.2 Score=56.58 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.|..-|+|+|...+|||||+|+|++..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence 456669999999999999999999543
No 379
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.02 E-value=14 Score=42.33 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHH
Q 005055 660 EAKAALEKAAIVQERTSKEMQQREDVLR 687 (716)
Q Consensus 660 ~~Ka~leq~~~~~~~~~e~~q~~e~~~~ 687 (716)
+..+.|...|.....++.++...-..|-
T Consensus 165 ~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 165 QERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555444443333
No 380
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.96 E-value=0.053 Score=56.31 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 381
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=93.85 E-value=0.097 Score=51.35 Aligned_cols=55 Identities=20% Similarity=0.133 Sum_probs=37.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|.++|+.++|||+|++++.... |. + .. .|.|+-..... ...+.+.|.||.|..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~--~~--~-~~-~t~~~~~~~~~-------~~~~~l~l~D~~G~~ 68 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGE--SV--T-TI-PTIGFNVETVT-------YKNISFTVWDVGGQD 68 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CC--C-cC-CccccceEEEE-------ECCEEEEEEECCCCh
Confidence 348899999999999999996433 41 1 22 35565433211 124789999999953
No 382
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.81 E-value=0.095 Score=50.54 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.++|..++|||+|++++.... |. . . ..|.|.-... + ....+.+.|.||.|.+
T Consensus 3 v~~~G~~~~GKTsli~~l~~~~--~~-~--~-~pt~g~~~~~--~-----~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGE--IV-T--T-IPTIGFNVET--V-----EYKNISFTVWDVGGQD 55 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Cc-c--c-CCCCCcceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999996543 53 1 1 2344542211 1 1234789999999964
No 383
>PRK01156 chromosome segregation protein; Provisional
Probab=93.77 E-value=24 Score=43.97 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=60.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHhhHHhHH
Q 005055 519 KYRSIEDNMKLLKKQLEDSERYKSEYLKRY-------DDAINDKKKLADDY---TSRINNLQGENISLREKSSSLSKTVD 588 (716)
Q Consensus 519 k~~s~e~e~~~l~k~~e~~~~~~~~~~k~l-------ee~i~dlk~~~e~~---~~~~~~l~~k~~~le~~~~~~~~~le 588 (716)
+++....++..+...++.....+......| +..+.+++....++ ..++...+.++..++.++..+..+++
T Consensus 581 ~~~~~~~~l~e~~~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~ 660 (895)
T PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA 660 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555544444444434333211 13333443333322 22223334444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 589 SLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 589 ~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
..+....++. ..+..++........+.+++..++.....+++++..+.+++...+++..
T Consensus 661 ~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 661 EIDSIIPDLK-EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444333331 1222234444444556666666666666666666666666655555554
No 384
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.76 E-value=0.1 Score=53.84 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|++++.+.. |.- ...|+.-..|.+ ++. .+|..+.+-|.||.|..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~~--f~~--~y~pTi~~~~~~--~~~---~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDA--YPG--SYVPTVFENYTA--SFE---IDKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--ccCCccccceEE--EEE---ECCEEEEEEEEeCCCcH
Confidence 5799999999999999999765 642 222322223322 222 35667889999999954
No 385
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.73 E-value=0.051 Score=55.13 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+.+-.||+|+|+.++|||||++.|.+.-
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455789999999999999999998763
No 386
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.70 E-value=4.1 Score=37.05 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005055 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVL 622 (716)
Q Consensus 546 k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l 622 (716)
..++..|.+.+.-.+++..+... |+....+|..+-++..+-+.+++++|.++ +++.|-.+.++++++...
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~-------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQ-------LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333 44444444444555555555555555555 344444455666666666
Q ss_pred HhhhHHHHHHHHHH
Q 005055 623 KSRSTAAEARLAAA 636 (716)
Q Consensus 623 ~~r~~~~eerl~~~ 636 (716)
+.....+|=+++++
T Consensus 92 ~~dka~lel~l~e~ 105 (107)
T PF09304_consen 92 QKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHhh
Confidence 66666666555443
No 387
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.69 E-value=10 Score=39.49 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005055 558 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 637 (716)
Q Consensus 558 ~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~ 637 (716)
+.++++.++..++.....|..+...+++.++...-+--.-....+.-+..-++.++++...|.+|+++-..+|-
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr------ 126 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER------ 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------
Confidence 34444444444444444444444444444444333332223333333555666677777777766665554441
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH---HHHHHH
Q 005055 638 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV---LREEFS 691 (716)
Q Consensus 638 ~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~---~~~~~~ 691 (716)
.-...-=-+++.-++..+++ +--|-||-+.--.+-+++.+|---|+ ||.|++
T Consensus 127 -akRati~sleDfeqrLnqAI-ErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 127 -AKRATIYSLEDFEQRLNQAI-ERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred -hhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112445556667777 66677777777777777777754443 555543
No 388
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.62 E-value=0.057 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSS 96 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~ 96 (716)
|=-+|+|+|+.++|||+|++.|++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345799999999999999999998753
No 389
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.61 E-value=2.7 Score=38.21 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005055 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645 (716)
Q Consensus 566 ~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~ 645 (716)
...|.....+++.++.++...|+..|....+|.+.= +.|.+....|+....+..-|+.++++++..+..
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqk-----------d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQK-----------DQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888884433 334444444444444444444444444444444
Q ss_pred HHHHHHH
Q 005055 646 EVEEWKR 652 (716)
Q Consensus 646 E~~~w~~ 652 (716)
..+.-|.
T Consensus 73 ~le~eK~ 79 (107)
T PF09304_consen 73 NLEDEKQ 79 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4554333
No 390
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.55 E-value=19 Score=42.17 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=81.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHH
Q 005055 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (716)
Q Consensus 513 ~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~ 592 (716)
...+..+++.+++++..+..-+++...........|++...=...++.-++.+...-+...-.+|.++..+..|+.....
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455666777777777777777777666666666666655555555555555444444444444444444444433222
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 593 ---------------EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 657 (716)
Q Consensus 593 ---------------e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~ 657 (716)
-.....+...++.++.+..+..+...++..+..++++|..+.+....+...+..+..+ ..|+.+
T Consensus 271 ~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeI 349 (629)
T KOG0963|consen 271 SKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEI 349 (629)
T ss_pred hhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHH
Confidence 2223344555555565555666666666555556666666666666655555555544 456554
Q ss_pred H
Q 005055 658 V 658 (716)
Q Consensus 658 ~ 658 (716)
=
T Consensus 350 K 350 (629)
T KOG0963|consen 350 K 350 (629)
T ss_pred H
Confidence 4
No 391
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=93.54 E-value=0.27 Score=59.68 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=49.7
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhH
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQ 150 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~ 150 (716)
..+|+|+|....|||+|+|+|.+.. |.-+.. ...|..|-.+..++ ++ ..+.|+||+|..++.. .+
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~-~GIT~~iga~~v~~-----~~--~~ItfiDTPGhe~F~~-----m~ 354 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTN--VAAGEA-GGITQHIGAYQVET-----NG--GKITFLDTPGHEAFTA-----MR 354 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCC--cccccc-CceeeeccEEEEEE-----CC--EEEEEEECCCCccchh-----HH
Confidence 3579999999999999999998654 332211 11122111111111 12 5688999999754321 12
Q ss_pred HHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 151 IFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 151 IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
.-.....=.-++||.....+..+..+.+
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAI 382 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHH
Confidence 1111111112567776554555544443
No 392
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.51 E-value=14 Score=40.36 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 005055 558 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (716)
Q Consensus 558 ~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~ 604 (716)
..+++-.+...++.++..|+..+.++.+..+.+..|..-|+.+-+++
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555544
No 393
>PRK00049 elongation factor Tu; Reviewed
Probab=93.50 E-value=0.19 Score=56.36 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|..-|+|+|...+|||+|++.|++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHh
Confidence 45666999999999999999999973
No 394
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.50 E-value=16 Score=44.42 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHhhHHhH
Q 005055 523 IEDNMKLLKKQLEDSERYKSEYLK-------RYDDAINDKKKLADDYTSRI--------NNLQGENISLREKSSSLSKTV 587 (716)
Q Consensus 523 ~e~e~~~l~k~~e~~~~~~~~~~k-------~lee~i~dlk~~~e~~~~~~--------~~l~~k~~~le~~~~~~~~~l 587 (716)
++.++..|++++++..+....++. -|.+-+.||+.-.|+-..++ ..+..-...||.++.-+.++|
T Consensus 22 ae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l 101 (769)
T PF05911_consen 22 AEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665544433333 34555555533333333333 566666678899999999999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 588 DSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 588 e~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
..+..|..-+.+-.++- |-+....+......|.+|+.|+...|-.+++|.=++.....|.+
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877766553 66666666777777777777777777777777777777666665
No 395
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.50 E-value=8.8 Score=38.19 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHH
Q 005055 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600 (716)
Q Consensus 559 ~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~ 600 (716)
..++..+.+..+..|+-||-++...++.+.++++|......+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~ 100 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ 100 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 557777778888888888888888888888888776655544
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.47 E-value=0.054 Score=62.39 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|+|+|+.|+||||++..|.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 397
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=93.45 E-value=0.3 Score=56.16 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+..-|+|+|...+|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 3445557899999999999999998654
No 398
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.44 E-value=22 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEeeCCCCCChhHHHHHhh
Q 005055 71 IGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~ll 92 (716)
-.|+.|+|+.++|||+||+.+.
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3477899999999999999963
No 399
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.43 E-value=0.074 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
No 400
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.42 E-value=0.13 Score=52.94 Aligned_cols=53 Identities=25% Similarity=0.420 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||+|+|++++.. |. . . ..|.|.-+....+ ..+.+.++||.|..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~--f~--~-~-~~Tig~~~~~~~~-------~~~~l~iwDt~G~e 55 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERR--FK--D-T-VSTVGGAFYLKQW-------GPYNISIWDTAGRE 55 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CC--C-C-CCccceEEEEEEe-------eEEEEEEEeCCCcc
Confidence 6799999999999999999876 63 1 2 2355543332221 23678999999964
No 401
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.38 E-value=0.14 Score=53.26 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=39.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||.|++++.+.. |.- ...| |.|.-. ...+ ..+|..+.+-|.||.|..
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~--F~~--~y~p-Ti~~~~-~~~i---~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC--YPE--TYVP-TVFENY-TAGL---ETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC--CcCC-ceeeee-EEEE---EECCEEEEEEEEeCCCch
Confidence 46799999999999999999765 642 2223 333322 1222 235677899999999953
No 402
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.37 E-value=0.078 Score=57.14 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 403
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=93.34 E-value=0.14 Score=49.48 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|+.++|||+|++++++.. |.- . .+.|.|-.. ..+ ..+|..+.+.+.||-|..
T Consensus 3 i~vvG~~gvGKTsli~~~~~~~--f~~--~-~~~~~~~~~--~~i---~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGS--YVQ--L-ESPEGGRFK--KEV---LVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCC--C-CCCCccceE--EEE---EECCEEEEEEEEECCCCC
Confidence 6899999999999999988654 532 1 122334331 112 124666788999999863
No 404
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.33 E-value=0.13 Score=55.41 Aligned_cols=57 Identities=30% Similarity=0.351 Sum_probs=37.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc-CCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~-~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.+=|+.+|++..|||+|||.|.|..+-+.--+ |+--+--|+.-+ +| ..+=+||++|+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y---------~g--a~IQild~Pgi 120 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY---------KG--AQIQLLDLPGI 120 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee---------cC--ceEEEEcCccc
Confidence 45688999999999999999999863221111 222222344432 22 56788999998
No 405
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.32 E-value=0.059 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 406
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.31 E-value=21 Score=42.04 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=22.0
Q ss_pred ccchhhHHH--HHHHHHHHHhcCCCCCccchHHHHHHH
Q 005055 318 VLTGPVLIG--ITESYLDAINNGAVPTISSSWQSVEEA 353 (716)
Q Consensus 318 ~ltG~~l~~--l~~~yv~ain~g~vP~i~s~~~~~~e~ 353 (716)
.++|..... -.+.=|+-|.+..+|.+++.+..+.+.
T Consensus 53 ~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~ 90 (560)
T PF06160_consen 53 NLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY 90 (560)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466665433 235556677777888888765544443
No 407
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.30 E-value=7.2 Score=45.34 Aligned_cols=169 Identities=14% Similarity=0.220 Sum_probs=89.6
Q ss_pred CCCchhHHHHHHHhhhccc------hHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005055 478 HGPGKWQKLATFLQQSSEG------PILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDA 551 (716)
Q Consensus 478 ~GP~K~~~L~~FLq~~~~~------~il~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~ 551 (716)
.+|.....+.+||+..... +=....+--..+.+..++.|.++..-+-+.++.-.+++ ..++-+++++
T Consensus 79 P~~~taa~i~eWles~~p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKI-------rDLE~cie~k 151 (861)
T KOG1899|consen 79 PDPQTAARIAEWLESPSPSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKI-------RDLETCIEEK 151 (861)
T ss_pred CCchHHHHHHHHHhccCCCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhH-------HHHHHHHHHH
Confidence 4555566677777644431 00111122223445555555555554444444444444 3344444444
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHh
Q 005055 552 INDKKKLADDYT---SRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAME-DQVCSEIEVLKS 624 (716)
Q Consensus 552 i~dlk~~~e~~~---~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~-~~~~~~i~~l~~ 624 (716)
-+.|...-|.+. -.++.|++++=.|=.+++.|+=.+-+.++|..|+++++-.. ++...+.+ ..+..+--..+.
T Consensus 152 r~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~ 231 (861)
T KOG1899|consen 152 RNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYET 231 (861)
T ss_pred HhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444422222222 22366777776666777777777777777776666655433 44332221 223333334555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 625 RSTAAEARLAAAREQALSAQEEVEEWKRK 653 (716)
Q Consensus 625 r~~~~eerl~~~~~ql~~ak~E~~~w~~k 653 (716)
++.+.-+.++.+++|+.....|...+.++
T Consensus 232 klkstk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 232 KLKSTKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred hcccccchhhhHHHHHhhhhhHHHHHHHH
Confidence 66677777888888887777777755443
No 408
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.27 E-value=18 Score=40.96 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005055 430 YMEADIRCSSAIQSMERKLRA 450 (716)
Q Consensus 430 ~~~s~~~C~~~l~~le~~l~~ 450 (716)
...-..+|+++. |+.++++
T Consensus 331 ~~IqdLq~sN~y--Le~kvke 349 (527)
T PF15066_consen 331 NRIQDLQCSNLY--LEKKVKE 349 (527)
T ss_pred HHHHHhhhccHH--HHHHHHH
Confidence 344455677655 5666654
No 409
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.25 E-value=22 Score=42.11 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 005055 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (716)
Q Consensus 565 ~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y 601 (716)
-+..|+.-+..-..++..|..+.+..+....+--++.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3355555555555555555555554444433333333
No 410
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.23 E-value=0.31 Score=57.41 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=37.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.+|+|+|...+|||+|+|+|.+.. |..+.. ...|..+-.+..++ +++ ..+.|+||+|...
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~-~GIT~~ig~~~v~~----~~~--~~i~~iDTPGhe~ 147 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTK--VAQGEA-GGITQHIGAYHVEN----EDG--KMITFLDTPGHEA 147 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cccccC-CceeecceEEEEEE----CCC--cEEEEEECCCCcc
Confidence 368999999999999999998764 433211 11232222222221 122 2688999999643
No 411
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.23 E-value=0.25 Score=55.34 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCC--------ccccccC-CCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~--------gF~~g~~-~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.|...|+|+|...+|||+|++.|++... ++.+... ..-..+||=+-...+.. +.....+.|+||+|..
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~---~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY---ETENRHYAHVDCPGHA 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE---cCCCEEEEEEECCchH
Confidence 5666799999999999999999985410 1111000 00001222211111111 1123568899999963
Q ss_pred ccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHH
Q 005055 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (716)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (716)
.+ ....+.+++..=.-++|+.....+..+..+++.+
T Consensus 87 ~f-----~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~ 122 (394)
T TIGR00485 87 DY-----VKNMITGAAQMDGAILVVSATDGPMPQTREHILL 122 (394)
T ss_pred HH-----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 21 1233444443334466777665566666655544
No 412
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.23 E-value=0.28 Score=58.22 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
||+++|....|||+|+|.|.|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~ 24 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN 24 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 413
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=93.19 E-value=0.67 Score=37.25 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 612 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQER 674 (716)
Q Consensus 612 ~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~ 674 (716)
.++|++.+..|.+++.++..-+.+++...+.|++|++ .+-.+|+-.+..|+|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa-----------RAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA-----------RANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhHhhccC
Confidence 4678999999999999999999999999999999999 788888888888864
No 414
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=93.19 E-value=4.8 Score=39.46 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHH
Q 005055 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (716)
Q Consensus 513 ~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~ 592 (716)
...|+...+.+......-++.-...+....+.+..+++...+|..+++++.+++..|+.++.++.+..+.+..+=...+.
T Consensus 52 ~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 52 LELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKK 131 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHH
Confidence 33444444444444444444444444455555667777777777777777777777777766666655555554444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005055 593 EISDWKRKYDQVLTKQK 609 (716)
Q Consensus 593 e~~e~~r~y~~~i~~~k 609 (716)
+-.....+|-+.+...+
T Consensus 132 e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 132 EYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 415
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.16 E-value=0.074 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.|+|+|..++||||||+.|.|.-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCcc
Confidence 68999999999999999999864
No 416
>COG0218 Predicted GTPase [General function prediction only]
Probab=93.14 E-value=0.18 Score=50.93 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=39.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
...=|+.+|....|||+|+|.|.|+..--.++.|. ..|.=|=.+.. ++ .+.|+|.+|.|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP-GrTq~iNff~~-------~~---~~~lVDlPGYG 81 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP-GRTQLINFFEV-------DD---ELRLVDLPGYG 81 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC-CccceeEEEEe-------cC---cEEEEeCCCcc
Confidence 44568999999999999999999976433343332 23444433211 21 27789999986
No 417
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.13 E-value=0.17 Score=50.45 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=38.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||.|++++++.. |.- ...| |.|.-. ...+ ..++..+.+-+.||.|..
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~--f~~--~~~p-T~~~~~-~~~~---~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDC--FPE--NYVP-TVFENY-TASF---EIDTQRIELSLWDTSGSP 64 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--ccCC-ceeeee-EEEE---EECCEEEEEEEEECCCch
Confidence 38899999999999999999765 532 1122 333221 1122 125667889999999953
No 418
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=93.12 E-value=0.19 Score=59.28 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCC---------CcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~---------~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|+|+|...+|||+|+++|+.....|.-...+ .-.++||=+-+..... +..++.+-|+||+|..+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHH
Confidence 38999999999999999999765445332211 1124566554432211 12347788999999754
No 419
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.10 E-value=0.07 Score=54.56 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=25.0
Q ss_pred HhhccCCCEE---EEEeeCCCCCChhHHHHHhhCC
Q 005055 63 ALQLVKEPIG---VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 63 ~L~~i~~pV~---VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|..|+-.|. ||+|+||.+|||||||..|-+-
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4555554443 8999999999999999988764
No 420
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=93.07 E-value=0.27 Score=57.30 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=52.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCC---------------cccceEEeeccccccccCCCCceeEEEE
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR---------------PCTKGLWLWSAPLKRTALDGTEYNLLLL 133 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~---------------~~TkGIWmw~~p~~~~~~~g~~~~vvlL 133 (716)
..+--|+|+|...+|||+|+++|+-........+++. -.++||=+.+..... +...+.+.|+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inli 85 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLL 85 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEE
Confidence 3456799999999999999999873321111101110 113455544432221 2234788999
Q ss_pred eCCCCcccccCCcchhHHHHHhhhccceEEEccCCCCch
Q 005055 134 DSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (716)
Q Consensus 134 DTEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (716)
||+|..++. .+++- +|...=+-++|+.....+..
T Consensus 86 DTPG~~df~----~~~~~-~l~~aD~aIlVvDa~~gv~~ 119 (527)
T TIGR00503 86 DTPGHEDFS----EDTYR-TLTAVDNCLMVIDAAKGVET 119 (527)
T ss_pred ECCChhhHH----HHHHH-HHHhCCEEEEEEECCCCCCH
Confidence 999974221 12222 34443344566666554443
No 421
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.06 E-value=1.4 Score=47.88 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHH
Q 005055 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600 (716)
Q Consensus 549 ee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~ 600 (716)
.+.+.++.++++.+..+...+..+...+|.+...+.+++...+.+..+....
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555554444433
No 422
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.04 E-value=0.068 Score=56.28 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-|++|+||.++||||||..|.|-.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999999853
No 423
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.03 E-value=0.07 Score=54.23 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 424
>PLN03127 Elongation factor Tu; Provisional
Probab=93.02 E-value=0.43 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..|..-|+|+|-..+|||+|+|.|.|.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~ 84 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKV 84 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhH
Confidence 455566999999999999999999743
No 425
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.02 E-value=0.072 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 426
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.98 E-value=0.072 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 427
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.98 E-value=35 Score=43.55 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 551 AINDKKKLADDYTSRI----------NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE 620 (716)
Q Consensus 551 ~i~dlk~~~e~~~~~~----------~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~ 620 (716)
.+....+.+++..++. ..++.+.+.+.++...++++++.+++++.+-.+....+++- +......+..|+
T Consensus 796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~-~~e~k~~~~~~~ 874 (1294)
T KOG0962|consen 796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINL-RNELKEEKQKIE 874 (1294)
T ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333355555555554 56778888888888899999999999988888777776432 222333444444
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005055 621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 676 (716)
Q Consensus 621 ~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~ 676 (716)
..=.+...+++++..+.+......++..+-..+.. ..+..|+...+.|+++-
T Consensus 875 ~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~----~~~~~l~e~~s~~e~~k 926 (1294)
T KOG0962|consen 875 RSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ----PLKVELEEAQSEKEELK 926 (1294)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc----chhhhHHHHHHHHHHHH
Confidence 44455666666666666666665555553333222 22334444444444433
No 428
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.91 E-value=0.15 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999974
No 429
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.91 E-value=11 Score=37.47 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSE 538 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~ 538 (716)
..+++.+|.+.-.+...+..+..++...+
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777765554
No 430
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.89 E-value=13 Score=38.52 Aligned_cols=182 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 005055 441 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 520 (716)
Q Consensus 441 l~~le~~l~~~~~~~~~~~~~~~~~l~~ll~eY~~~~~GP~K~~~L~~FLq~~~~~~il~~~k~l~~~i~~e~~~l~~k~ 520 (716)
+..|..++..+..... .+..|.+....+..+|-.. |...-++...++=........+.+..+...+-..=
T Consensus 7 ~~~l~~r~~~g~~~~~-el~~f~keRa~iE~eYak~---------L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H 76 (236)
T cd07651 7 FDVIQTRIKDSLRTLE-ELRSFYKERASIEEEYAKR---------LEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSH 76 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred hcHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHH-----------HHHHhhH
Q 005055 521 RSIEDNMK-LLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRI----NNLQGENISLR-----------EKSSSLS 584 (716)
Q Consensus 521 ~s~e~e~~-~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~----~~l~~k~~~le-----------~~~~~~~ 584 (716)
..+-..+. .+...+......+....+..+..+..+.+......... ..|...|..++ .+..-+.
T Consensus 77 ~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~ 156 (236)
T cd07651 77 LKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNN 156 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR 632 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eer 632 (716)
..++.++.++..-+..|+..++........+...+...=.+++.+|+.
T Consensus 157 ~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~ 204 (236)
T cd07651 157 AKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEE 204 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.89 E-value=0.068 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-+|+|+|+-+||||+|.|+|+..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~ 31 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANI 31 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHH
Confidence 568999999999999999999854
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.84 E-value=0.074 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999864
No 433
>PRK13351 elongation factor G; Reviewed
Probab=92.84 E-value=0.25 Score=59.42 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+.-|+|+|..++|||+|+++|+..
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~ 31 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFY 31 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHh
Confidence 3567899999999999999999854
No 434
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.078 Score=54.11 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999863
No 435
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.83 E-value=0.078 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 436
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.82 E-value=0.078 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 437
>PRK01889 GTPase RsgA; Reviewed
Probab=92.82 E-value=0.061 Score=59.47 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|..++|||+|+|.|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999999853
No 438
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.82 E-value=0.057 Score=54.17 Aligned_cols=23 Identities=13% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
||+|+|+.++|||||++.|.+.-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998753
No 439
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.82 E-value=20 Score=40.49 Aligned_cols=214 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005055 476 SCHGPGKWQKLATFLQQSSE-----GPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 550 (716)
Q Consensus 476 ~~~GP~K~~~L~~FLq~~~~-----~~il~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee 550 (716)
.|+||--|.++.-+|.=.+. +..++....+...-.-+..+...=.+=.-+....--+--+.....+++...++++
T Consensus 185 sAI~ph~Wp~iLgMlhW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~ 264 (622)
T COG5185 185 SAIGPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEK 264 (622)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005055 551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 630 (716)
Q Consensus 551 ~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~e 630 (716)
...++-..++....++..|..++++-+ +++.-.+.|+.-..+...-..+|+...+..|..+...-+-|..|+..|-.-|
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kE 343 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKE 343 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHH
Q 005055 631 ARLAAAREQALSAQ----------EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (716)
Q Consensus 631 erl~~~~~ql~~ak----------~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~ 694 (716)
+.+.+++++.+..+ ++++..+++-+.+-+ .|++-...-++|-+.+-.++-..++-|.+..
T Consensus 344 eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r----eL~~i~~~~~~L~k~V~~~~leaq~~~~sle 413 (622)
T COG5185 344 EEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR----ELDKINIQSDKLTKSVKSRKLEAQGIFKSLE 413 (622)
T ss_pred HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HHHHhcchHHHHHHHHHhHHHHHHHHHHHHH
No 440
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.82 E-value=10 Score=45.48 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 005055 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (716)
Q Consensus 619 i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~ 696 (716)
|..|+.++..+...+..+..+......|+.+..+++..+ .....+.-+.+.+. . +|+.+|..+.+.+.+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~L~~~~~~l~~~-~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL-------QSDLESLEENLVEK-K-KEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443 33333333332222 2 666666666666543
No 441
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=27 Score=41.86 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005055 665 LEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVLSYL 702 (716)
Q Consensus 665 leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~~~~ 702 (716)
|++++..--.-++-.+-.-++|+++..+.+-.|+..|-
T Consensus 554 lskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 554 LSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333444455556788888888888888886
No 442
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.08 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 443
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.79 E-value=0.079 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999864
No 444
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.78 E-value=3 Score=43.83 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=46.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHH
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD 588 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le 588 (716)
+..++..++.|++.- ++.+++..+++..+..-+++.+....+++.|.++..+|-+.|..+.+.-+
T Consensus 20 IqelE~QldkLkKE~----qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 20 IQELEQQLDKLKKER----QQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 444455444444432 55577788888888888888999999999999888888877766655433
No 445
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.15 Score=49.09 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=45.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-+-|+|+.+||||-||-++.... |.- ..++|-||-.-+.-+. ..|+.+.+-+.||-|..
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~k--fkD---dssHTiGveFgSrIin---VGgK~vKLQIWDTAGQE 69 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENK--FKD---DSSHTIGVEFGSRIVN---VGGKTVKLQIWDTAGQE 69 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhh--hcc---cccceeeeeecceeee---ecCcEEEEEEeecccHH
Confidence 35689999999999999998765 543 2368999988876553 35677889999999953
No 446
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.68 E-value=14 Score=38.13 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 005055 593 EISDWKRKYDQVLTK 607 (716)
Q Consensus 593 e~~e~~r~y~~~i~~ 607 (716)
+..+-+..|++.+..
T Consensus 89 ~Al~~k~~~~~~~~~ 103 (219)
T TIGR02977 89 AALIEKQKAQELAEA 103 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 447
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.68 E-value=0.077 Score=53.74 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999863
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.67 E-value=0.084 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999874
No 449
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.65 E-value=0.085 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999874
No 450
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.65 E-value=0.086 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 451
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.63 E-value=0.087 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.62 E-value=0.09 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++|||+|++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999874
No 453
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.62 E-value=0.085 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.61 E-value=0.11 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGF 98 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF 98 (716)
+|.|+||.++|||+|++.|.+...++
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 68999999999999999999865433
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.60 E-value=0.17 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++++||.++||||||+.|+|--
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999863
No 456
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.59 E-value=0.084 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999875
No 457
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.58 E-value=0.085 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999964
No 458
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.58 E-value=0.087 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||++.|+|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999864
No 459
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.56 E-value=5.4 Score=44.70 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=11.7
Q ss_pred CCccccccCCCcccceEEee
Q 005055 95 SSGFQVASTHRPCTKGLWLW 114 (716)
Q Consensus 95 ~~gF~~g~~~~~~TkGIWmw 114 (716)
..+|.-|+...-.|+||--.
T Consensus 40 ~~~~~sgnp~ve~t~GiiHL 59 (493)
T KOG0804|consen 40 QIKYSSGNPSVEETHGIIHL 59 (493)
T ss_pred cccccCCCCceeeeceeEEE
Confidence 34555555555667887544
No 460
>PF14992 TMCO5: TMCO5 family
Probab=92.56 E-value=2.6 Score=44.74 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 005055 593 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA----------QEEVEEWKRKYGVAVREAK 662 (716)
Q Consensus 593 e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~a----------k~E~~~w~~kY~~~~~~~K 662 (716)
.+.|+.++..+.-.+..-....+...++..+++++.+.+-|+..+.++... ..+...|-+||+..+ .|
T Consensus 85 ~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L--~r 162 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL--RR 162 (280)
T ss_pred hhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 335555554444333323344455556666666555555555555554444 567788999999999 45
Q ss_pred HHHHHHHHHHHHhhHHHHhhHHHH
Q 005055 663 AALEKAAIVQERTSKEMQQREDVL 686 (716)
Q Consensus 663 a~leq~~~~~~~~~e~~q~~e~~~ 686 (716)
..-++++...++-+..+|....+.
T Consensus 163 mE~ekE~~lLe~el~k~q~~~s~~ 186 (280)
T PF14992_consen 163 MEEEKEMLLLEKELSKYQMQDSQS 186 (280)
T ss_pred HHHHHHHHHHHHHHHHHhchhhch
Confidence 555999999999999998875544
No 461
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.54 E-value=0.19 Score=49.73 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
=|.|+|..++|||+|++++.... |. . . ..|.|+-+.. + +...+.+.+.||.|.
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~--~~--~-~-~pt~g~~~~~--~-----~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGE--IV--T-T-IPTIGFNVET--V-----EYKNISFTVWDVGGQ 71 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCC--Cc--c-c-cCCcceeEEE--E-----EECCEEEEEEECCCC
Confidence 47899999999999999997543 42 1 1 2355654332 1 123478999999995
No 462
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.54 E-value=0.049 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCcccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQV 100 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~ 100 (716)
|+|+|..+||||||++.|... |+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~--g~~~ 26 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR--GYPV 26 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH--T-EE
T ss_pred EEEECCCCCCHHHHHHHHHHc--CCeE
Confidence 789999999999999999966 5543
No 463
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=92.54 E-value=8.5 Score=43.67 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=70.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhH
Q 005055 520 YRSIEDNMKLLKKQLEDSERYKSEYLKR------------YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (716)
Q Consensus 520 ~~s~e~e~~~l~k~~e~~~~~~~~~~k~------------lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~l 587 (716)
..-++.+++.-++.+.+....+..++.+ .-+.|+.|+.+.-+...+++.|..-.+.-.-++..+..++
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI 323 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKI 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 4445555555555555555444544432 2244444444444444554444443333334455555566
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 588 DSLKNEISDWKRKYDQ-----VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (716)
Q Consensus 588 e~~k~e~~e~~r~y~~-----~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~ 651 (716)
.++++++.+-+.+.-. .+++ ..++-+.|.-...-++..+.++-..++.|+-|+..+.
T Consensus 324 ~aLe~QIa~er~kl~~~~g~~~la~-------~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 324 KVLEKQIGEQRNRLSNKLGSQGSSE-------SLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666665555421 1222 2333455555666889999999999999999998543
No 464
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.1 Score=53.72 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHhhccCCCEE---EEEeeCCCCCChhHHHHHhhCCC
Q 005055 61 VAALQLVKEPIG---VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 61 l~~L~~i~~pV~---VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.++|..++--|. |-+|.||.+||||||.+.|.|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367776654333 78999999999999999999985
No 465
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.53 E-value=0.095 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++|||+||+.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 466
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.52 E-value=0.084 Score=52.98 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
||+|+|+.+||||||.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 467
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=92.52 E-value=0.23 Score=49.47 Aligned_cols=57 Identities=28% Similarity=0.232 Sum_probs=38.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|++++.... |.- .. ..|.|.-. ..++ ..+|..+.+-+.||.|..
T Consensus 6 i~~vG~~~vGKTsli~~~~~~~--f~~--~~-~~t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNA--FPK--EY-IPTVFDNY-SAQT---AVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--CC-CCceEeee-EEEE---EECCEEEEEEEEECCCch
Confidence 7899999999999999998754 632 11 23445422 2222 124667899999999964
No 468
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.49 E-value=20 Score=39.61 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 005055 626 STAAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 626 ~~~~eerl~~~~~ql~~ak~E~~ 648 (716)
....+++++....++++..+++.
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~ 234 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQ 234 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554
No 469
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.47 E-value=0.092 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 470
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.46 E-value=0.094 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.46 E-value=0.065 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
||+|+|+.++|||||++.|.+.-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 472
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.45 E-value=8.9 Score=45.32 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHH
Q 005055 499 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK----------RYDDAINDKKKLADDYTSRINN 568 (716)
Q Consensus 499 l~~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k----------~lee~i~dlk~~~e~~~~~~~~ 568 (716)
+..+.+.....+.++..++..+..+++.-+..+..+...++..-..++ .++.++.......-+...++.+
T Consensus 37 ~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~s 116 (916)
T KOG0249|consen 37 LPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRS 116 (916)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhh
Q ss_pred HHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhh----------
Q 005055 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV-------------LTKQKAMEDQVCSEIEVLKSR---------- 625 (716)
Q Consensus 569 l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~-------------i~~~k~~~~~~~~~i~~l~~r---------- 625 (716)
|+......|++...... .+++..--+++.++..++ +......-+++..++..+..|
T Consensus 117 lqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~r 195 (916)
T KOG0249|consen 117 LQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKR 195 (916)
T ss_pred hhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 005055 626 -STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (716)
Q Consensus 626 -~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~ 696 (716)
+.+.+|++.-...+..+|.++.+ .|+++.....+.+++++.-+|.|+++......+
T Consensus 196 lsdtvdErlqlhlkermaAle~kn---------------~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 196 LSDTVDERLQLHLKERMAALEDKN---------------RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 473
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.093 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999999874
No 474
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.094 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999874
No 475
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.1 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+ -+++|+|+.++||||||+.|+|..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999999864
No 476
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.42 E-value=0.096 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||||++.|+|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 477
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.40 E-value=0.41 Score=53.13 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=61.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC--Cccccc-------c-CC-CcccceEEeeccccccccCCCCceeEEE-EeC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVA-------S-TH-RPCTKGLWLWSAPLKRTALDGTEYNLLL-LDS 135 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~--~gF~~g-------~-~~-~~~TkGIWmw~~p~~~~~~~g~~~~vvl-LDT 135 (716)
..+++||.|+|+..||||||.+.|+++. .||.++ . .+ -|.|.+.-.=..|+.. ......++..| =++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~-L~~l~~~~~~FvG~i 148 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVIS-LSELEPFTLYFVGSI 148 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCC-HHHcCccceEEEecc
Confidence 4688999999999999999999988753 366443 1 11 1222222222222110 00111122233 222
Q ss_pred CCCcccccCCcchhHHHHHhhhccceEEEccCCCCch-HhhhhhH
Q 005055 136 EGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE-SAIDRLS 179 (716)
Q Consensus 136 EGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e-~~l~~L~ 179 (716)
.-.+...+--.-=++++.+|.=.+-..|.|+.|-|.- .+++.+.
T Consensus 149 sP~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~ 193 (398)
T COG1341 149 SPQGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKR 193 (398)
T ss_pred CCCCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHH
Confidence 2111111111113678888877778889999999987 7887653
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.40 E-value=0.093 Score=52.21 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|+|+|+.++|||||||.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 789999999999999999875
No 479
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.39 E-value=0.095 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999864
No 480
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.39 E-value=13 Score=37.10 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=57.8
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHH
Q 005055 515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (716)
Q Consensus 515 ~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~ 594 (716)
.|+.|++.+|-+-..-+.++..+......+.+.++.....-...-.+...++..|..+..+.+.||+.|.+||+-.++=.
T Consensus 8 ~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 8 NLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444555555555556666665555544444556666788999999999999999999998777655
Q ss_pred HHHHHHHHHHHH
Q 005055 595 SDWKRKYDQVLT 606 (716)
Q Consensus 595 ~e~~r~y~~~i~ 606 (716)
.--...=...+.
T Consensus 88 ~~ae~er~~~le 99 (178)
T PF14073_consen 88 ESAEKERNAVLE 99 (178)
T ss_pred HHHHHhhhHHHH
Confidence 444443333343
No 481
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.38 E-value=0.097 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
No 482
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.38 E-value=7.8 Score=38.71 Aligned_cols=111 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEV 621 (716)
Q Consensus 542 ~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~ 621 (716)
+.-....+..+.++.++.++...++..+......+++......+.+.+.+.+...++..|.....+..... +.+.+
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~----~~~~~ 155 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ----KELQD 155 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 622 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (716)
Q Consensus 622 l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq 667 (716)
.+.++......+..+....+...+-.. +.++.++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~l~~~ 190 (191)
T PF04156_consen 156 SREEVQELRSQLERLQENLQQLEEKIQ-----------ELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhh
No 483
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.37 E-value=0.096 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 484
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.37 E-value=0.096 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 485
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=92.37 E-value=0.16 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.33 E-value=0.099 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999874
No 487
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.32 E-value=0.13 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+..||+|+|+.++|||||++.|.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998764
No 488
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.30 E-value=0.099 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||+||+.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999999864
No 489
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.098 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 490
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.30 E-value=0.1 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
|=-+++|+|+.++|||+|++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999999864
No 491
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.28 E-value=0.098 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.28 E-value=0.1 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++|+|+.++||||||+.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.27 E-value=0.12 Score=42.52 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.0
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+..|.|+.++|||+||+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999853
No 494
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.27 E-value=0.14 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+++++|+.++|||||++.|+|..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999874
No 495
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.25 E-value=0.1 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 496
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.21 E-value=0.1 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999864
No 497
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.20 E-value=0.1 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 498
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.18 E-value=17 Score=38.21 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 584 SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR-LAAAREQALSAQEEVEEWKRKYGVAVREAK 662 (716)
Q Consensus 584 ~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eer-l~~~~~ql~~ak~E~~~w~~kY~~~~~~~K 662 (716)
.++++.++.-...-+..|+..++........+...+...=.+++.+|+. +.- +.++--.|...++..=
T Consensus 149 ~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~-----------~k~~l~~y~~~~~~~~ 217 (261)
T cd07648 149 PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQ-----------MKEFLASYAEVLSENH 217 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcc
Confidence 4555555555555556666666666555555655555444444444432 211 3334445666664443
Q ss_pred HHHHHHHHHHHHhhHHH
Q 005055 663 AALEKAAIVQERTSKEM 679 (716)
Q Consensus 663 a~leq~~~~~~~~~e~~ 679 (716)
-..++.....+..++..
T Consensus 218 ~~~~~~~e~~~~~~~~i 234 (261)
T cd07648 218 SAVGQVHEEFKRQVDEL 234 (261)
T ss_pred chHHHHHHHHHHHHHhC
Confidence 34444444444444433
No 499
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.18 E-value=0.11 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||+|++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999999975
No 500
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.17 E-value=8.3 Score=38.51 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~a 643 (716)
..++.+..+.+.+...+.++++.......+....+... .............++..++..+..+.+.+..+...+...
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005055 644 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678 (716)
Q Consensus 644 k~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~ 678 (716)
+.++.+.+..+..+. ..+..+++.+...+.++++
T Consensus 157 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 157 REEVQELRSQLERLQ-ENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Done!