Query 005055
Match_columns 716
No_of_seqs 294 out of 1219
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5n_A Interferon-induced guan 100.0 8.1E-95 2.8E-99 829.8 57.3 519 38-565 6-541 (592)
2 4ido_A Atlastin-1; GTPase, GTP 100.0 3.7E-89 1.3E-93 755.8 37.1 382 37-431 29-438 (457)
3 3q5d_A Atlastin-1; G protein, 100.0 1.1E-79 3.9E-84 684.2 33.9 382 37-431 29-438 (447)
4 3tnu_B Keratin, type II cytosk 99.4 8.5E-13 2.9E-17 122.9 11.9 111 567-678 11-128 (129)
5 3tnu_A Keratin, type I cytoske 99.4 1.3E-12 4.3E-17 122.0 12.1 111 567-678 13-130 (131)
6 1gk4_A Vimentin; intermediate 98.9 4.5E-09 1.5E-13 90.3 10.6 74 605-679 3-80 (84)
7 1x8y_A Lamin A/C; structural p 98.8 1.2E-08 4E-13 88.1 9.0 68 612-680 12-83 (86)
8 1gk6_A Vimentin; intermediate 98.6 1.3E-07 4.5E-12 75.6 8.0 52 626-678 2-53 (59)
9 3mov_A Lamin-B1; LMNB1, B-type 98.6 5.1E-08 1.7E-12 85.4 6.0 71 608-679 17-91 (95)
10 2xv5_A Lamin-A/C; structural p 98.4 9.3E-07 3.2E-11 73.7 7.6 52 627-679 8-59 (74)
11 2j69_A Bacterial dynamin-like 97.8 0.049 1.7E-06 63.8 36.3 37 69-108 67-103 (695)
12 3lxw_A GTPase IMAP family memb 97.8 4.4E-05 1.5E-09 78.1 9.1 59 72-142 22-84 (247)
13 3iev_A GTP-binding protein ERA 97.8 7.6E-05 2.6E-09 78.9 10.6 62 68-141 7-72 (308)
14 2xtp_A GTPase IMAP family memb 97.8 0.0001 3.5E-09 75.3 10.9 61 70-142 21-85 (260)
15 2v71_A Nuclear distribution pr 97.7 0.012 4E-07 57.5 23.1 116 569-685 47-169 (189)
16 3lxx_A GTPase IMAP family memb 97.7 0.00014 4.9E-09 73.3 10.1 61 70-142 28-92 (239)
17 1ega_A Protein (GTP-binding pr 97.5 0.00011 3.8E-09 77.5 7.2 57 70-139 7-67 (301)
18 2qu8_A Putative nucleolar GTP- 97.5 0.00034 1.2E-08 69.8 10.3 61 70-140 28-88 (228)
19 1wf3_A GTP-binding protein; GT 97.5 0.00014 4.8E-09 76.8 7.6 58 70-140 6-67 (301)
20 4dhe_A Probable GTP-binding pr 97.5 0.00026 9E-09 69.8 9.0 65 70-141 28-92 (223)
21 2dyk_A GTP-binding protein; GT 97.5 0.00016 5.5E-09 67.0 6.8 59 73-140 3-61 (161)
22 3pqc_A Probable GTP-binding pr 97.5 0.00037 1.2E-08 66.7 9.3 58 71-140 23-80 (195)
23 3na7_A HP0958; flagellar bioge 97.4 0.0095 3.3E-07 61.3 20.3 21 628-648 122-142 (256)
24 3t5d_A Septin-7; GTP-binding p 97.4 0.00024 8.3E-09 73.5 8.2 66 72-141 9-78 (274)
25 1h65_A Chloroplast outer envel 97.4 0.00032 1.1E-08 72.3 8.2 65 68-141 36-100 (270)
26 3def_A T7I23.11 protein; chlor 97.3 0.00041 1.4E-08 71.2 8.1 65 69-142 34-98 (262)
27 2erx_A GTP-binding protein DI- 97.2 0.00046 1.6E-08 64.4 7.2 56 73-139 5-62 (172)
28 1svi_A GTP-binding protein YSX 97.2 0.0009 3.1E-08 64.3 8.5 62 70-142 22-83 (195)
29 1i84_S Smooth muscle myosin he 97.1 0.0011 3.7E-08 82.4 10.7 38 52-90 151-188 (1184)
30 3t34_A Dynamin-related protein 97.1 0.00026 8.9E-09 76.3 4.5 26 70-95 33-58 (360)
31 3k53_A Ferrous iron transport 97.1 0.0006 2E-08 70.3 6.9 62 70-141 2-63 (271)
32 1ek0_A Protein (GTP-binding pr 97.1 0.00048 1.7E-08 64.1 5.4 59 73-139 5-63 (170)
33 3na7_A HP0958; flagellar bioge 97.1 0.11 3.7E-06 53.3 23.5 9 518-526 32-40 (256)
34 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00044 1.5E-08 65.2 5.0 62 70-139 6-67 (177)
35 3iby_A Ferrous iron transport 97.1 0.00057 2E-08 70.3 6.2 60 73-142 3-62 (256)
36 1i84_S Smooth muscle myosin he 97.1 0.0014 4.7E-08 81.5 10.6 16 127-142 457-472 (1184)
37 2g6b_A RAS-related protein RAB 97.1 0.00062 2.1E-08 64.3 5.9 63 70-139 9-71 (180)
38 1z0j_A RAB-22, RAS-related pro 97.1 0.00055 1.9E-08 63.8 5.5 60 72-139 7-66 (170)
39 3a1s_A Iron(II) transport prot 97.0 0.00072 2.5E-08 69.6 6.7 62 71-142 5-66 (258)
40 3i8s_A Ferrous iron transport 97.0 0.001 3.5E-08 68.9 7.8 61 72-142 4-64 (274)
41 2nzj_A GTP-binding protein REM 97.0 0.0011 3.7E-08 62.2 7.2 62 70-140 3-64 (175)
42 1u8z_A RAS-related protein RAL 97.0 0.00072 2.5E-08 62.6 5.9 59 72-139 5-63 (168)
43 1z08_A RAS-related protein RAB 97.0 0.00063 2.2E-08 63.5 5.5 61 71-139 6-66 (170)
44 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00078 2.7E-08 64.0 6.2 58 73-139 6-63 (189)
45 1z2a_A RAS-related protein RAB 97.0 0.00044 1.5E-08 64.4 4.3 60 72-139 6-65 (168)
46 1kao_A RAP2A; GTP-binding prot 97.0 0.00085 2.9E-08 62.1 6.2 58 73-139 5-62 (167)
47 1vg8_A RAS-related protein RAB 97.0 0.00096 3.3E-08 64.7 6.9 64 69-140 6-69 (207)
48 3tw8_B RAS-related protein RAB 97.0 0.00084 2.9E-08 63.2 6.2 63 69-139 7-69 (181)
49 2dfs_A Myosin-5A; myosin-V, in 97.0 0.014 4.7E-07 71.6 18.3 59 546-604 956-1017(1080)
50 2fn4_A P23, RAS-related protei 97.0 0.00085 2.9E-08 63.2 6.2 61 70-139 8-68 (181)
51 2y8e_A RAB-protein 6, GH09086P 97.0 0.00054 1.9E-08 64.4 4.8 60 72-139 15-74 (179)
52 3clv_A RAB5 protein, putative; 97.0 0.00069 2.4E-08 64.8 5.5 24 72-95 8-31 (208)
53 2zej_A Dardarin, leucine-rich 97.0 0.00065 2.2E-08 65.2 5.1 64 73-139 4-67 (184)
54 2ce2_X GTPase HRAS; signaling 96.9 0.00098 3.3E-08 61.4 6.1 58 73-139 5-62 (166)
55 3ghg_A Fibrinogen alpha chain; 96.9 0.0057 1.9E-07 67.3 12.8 94 539-633 53-154 (562)
56 1r2q_A RAS-related protein RAB 96.9 0.00083 2.8E-08 62.4 5.6 60 72-139 7-66 (170)
57 2lkc_A Translation initiation 96.9 0.001 3.6E-08 62.6 6.1 62 70-141 7-68 (178)
58 1jwy_B Dynamin A GTPase domain 96.9 0.00047 1.6E-08 72.2 4.0 26 70-95 23-48 (315)
59 2bov_A RAla, RAS-related prote 96.9 0.0015 5.2E-08 63.1 7.4 62 69-139 12-73 (206)
60 2gj8_A MNME, tRNA modification 96.9 0.00098 3.3E-08 63.5 5.9 59 72-139 5-63 (172)
61 2oil_A CATX-8, RAS-related pro 96.9 0.0009 3.1E-08 64.4 5.7 60 72-139 26-85 (193)
62 1z0f_A RAB14, member RAS oncog 96.9 0.0007 2.4E-08 63.6 4.8 62 70-139 14-75 (179)
63 1c1y_A RAS-related protein RAP 96.9 0.0011 3.8E-08 61.5 6.1 58 73-139 5-62 (167)
64 1g16_A RAS-related protein SEC 96.9 0.00069 2.4E-08 63.1 4.6 56 72-139 4-63 (170)
65 1zbd_A Rabphilin-3A; G protein 96.9 0.0011 3.8E-08 64.2 6.1 62 70-139 7-68 (203)
66 3trt_A Vimentin; cytoskeleton, 96.9 0.0061 2.1E-07 51.0 9.7 58 547-604 6-68 (77)
67 3q85_A GTP-binding protein REM 96.8 0.00082 2.8E-08 62.7 4.8 61 72-140 3-63 (169)
68 2gf0_A GTP-binding protein DI- 96.8 0.0011 3.7E-08 63.8 5.7 57 72-139 9-67 (199)
69 4djt_A GTP-binding nuclear pro 96.8 0.001 3.5E-08 65.4 5.6 62 70-140 10-73 (218)
70 2e87_A Hypothetical protein PH 96.8 0.0029 1E-07 68.0 9.6 62 69-140 165-226 (357)
71 2www_A Methylmalonic aciduria 96.8 0.0004 1.4E-08 74.7 2.7 26 68-93 71-96 (349)
72 3cph_A RAS-related protein SEC 96.8 0.00088 3E-08 65.3 4.8 63 70-140 19-81 (213)
73 1wxq_A GTP-binding protein; st 96.8 0.00084 2.9E-08 73.6 5.1 64 74-139 3-82 (397)
74 2bme_A RAB4A, RAS-related prot 96.8 0.001 3.5E-08 63.2 5.2 62 70-139 9-70 (186)
75 2fg5_A RAB-22B, RAS-related pr 96.8 0.0012 4.1E-08 63.7 5.7 61 71-139 23-83 (192)
76 3t5g_A GTP-binding protein RHE 96.8 0.0014 4.8E-08 62.1 6.1 62 71-141 6-67 (181)
77 1puj_A YLQF, conserved hypothe 96.8 0.0019 6.4E-08 67.5 7.5 58 72-141 121-178 (282)
78 4a9a_A Ribosome-interacting GT 96.8 0.00096 3.3E-08 72.6 5.4 56 70-138 71-129 (376)
79 3vkg_A Dynein heavy chain, cyt 96.8 0.14 5E-06 68.6 26.5 75 615-690 2012-2086(3245)
80 2dfs_A Myosin-5A; myosin-V, in 96.8 0.021 7E-07 70.1 17.4 68 582-649 981-1048(1080)
81 1ky3_A GTP-binding protein YPT 96.8 0.0013 4.4E-08 61.9 5.5 64 69-139 6-69 (182)
82 2gf9_A RAS-related protein RAB 96.8 0.0013 4.6E-08 63.0 5.7 61 72-140 23-83 (189)
83 1x3s_A RAS-related protein RAB 96.8 0.0013 4.4E-08 62.9 5.6 61 71-139 15-75 (195)
84 2a9k_A RAS-related protein RAL 96.8 0.0017 5.8E-08 61.4 6.3 60 71-139 18-77 (187)
85 3t1o_A Gliding protein MGLA; G 96.8 0.0066 2.3E-07 57.8 10.5 68 70-139 13-85 (198)
86 3con_A GTPase NRAS; structural 96.8 0.0015 5.1E-08 62.5 5.9 58 73-139 23-80 (190)
87 2wji_A Ferrous iron transport 96.7 0.0019 6.5E-08 60.7 6.5 56 72-141 4-63 (165)
88 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0011 3.6E-08 64.6 4.8 62 71-140 8-69 (206)
89 2v66_B Nuclear distribution pr 96.7 0.05 1.7E-06 48.5 15.0 98 579-677 4-108 (111)
90 2x2e_A Dynamin-1; nitration, h 96.7 0.0008 2.8E-08 72.3 4.2 26 70-95 30-55 (353)
91 2cxx_A Probable GTP-binding pr 96.7 0.0014 4.7E-08 62.5 5.4 54 73-140 3-56 (190)
92 2efe_B Small GTP-binding prote 96.7 0.0011 3.9E-08 62.5 4.6 62 70-139 11-72 (181)
93 2il1_A RAB12; G-protein, GDP, 96.7 0.0012 4E-08 63.8 4.8 59 73-139 28-86 (192)
94 3bc1_A RAS-related protein RAB 96.7 0.0022 7.4E-08 61.0 6.4 65 70-139 10-81 (195)
95 3oes_A GTPase rhebl1; small GT 96.7 0.0019 6.4E-08 62.8 6.1 62 70-140 23-84 (201)
96 3tkl_A RAS-related protein RAB 96.7 0.0014 4.8E-08 62.8 5.1 63 69-139 14-76 (196)
97 1oix_A RAS-related protein RAB 96.7 0.0016 5.5E-08 63.0 5.5 62 70-139 28-89 (191)
98 1z06_A RAS-related protein RAB 96.7 0.0017 5.7E-08 62.3 5.5 60 72-139 21-80 (189)
99 2f9l_A RAB11B, member RAS onco 96.6 0.0016 5.5E-08 63.2 5.3 62 70-139 4-65 (199)
100 1upt_A ARL1, ADP-ribosylation 96.6 0.0023 7.8E-08 59.7 6.1 56 72-140 8-63 (171)
101 2qpt_A EH domain-containing pr 96.6 0.004 1.4E-07 71.1 9.2 26 70-95 64-89 (550)
102 2ew1_A RAS-related protein RAB 96.6 0.0014 4.7E-08 64.4 4.7 61 71-139 26-86 (201)
103 3kkq_A RAS-related protein M-R 96.6 0.0038 1.3E-07 59.2 7.5 63 68-139 15-77 (183)
104 2efr_A General control protein 96.6 0.51 1.7E-05 44.6 24.0 135 542-692 14-151 (155)
105 3o0z_A RHO-associated protein 96.6 0.54 1.8E-05 44.9 22.6 95 550-648 27-121 (168)
106 2wjg_A FEOB, ferrous iron tran 96.6 0.0036 1.2E-07 59.5 7.3 61 71-141 7-67 (188)
107 2aka_B Dynamin-1; fusion prote 96.6 0.0013 4.5E-08 68.1 4.5 26 70-95 25-50 (299)
108 1r8s_A ADP-ribosylation factor 96.6 0.0015 5.2E-08 60.6 4.4 53 74-139 3-55 (164)
109 2qm8_A GTPase/ATPase; G protei 96.6 0.0029 1E-07 67.7 7.2 34 60-93 44-77 (337)
110 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0029 9.9E-08 59.8 6.3 59 73-140 7-65 (186)
111 3q72_A GTP-binding protein RAD 96.5 0.0022 7.4E-08 59.6 5.3 58 73-140 4-61 (166)
112 2q3h_A RAS homolog gene family 96.5 0.0031 1.1E-07 60.9 6.6 62 70-140 19-80 (201)
113 2p5s_A RAS and EF-hand domain 96.5 0.0017 5.9E-08 62.9 4.7 61 71-139 28-88 (199)
114 2yc2_C IFT27, small RAB-relate 96.5 0.00097 3.3E-08 64.5 2.9 62 72-139 21-84 (208)
115 2o52_A RAS-related protein RAB 96.5 0.0015 5E-08 63.7 4.1 60 72-139 26-85 (200)
116 2v71_A Nuclear distribution pr 96.5 0.64 2.2E-05 45.3 22.5 27 615-641 128-154 (189)
117 2atv_A RERG, RAS-like estrogen 96.5 0.0053 1.8E-07 59.2 8.0 60 71-139 28-87 (196)
118 4bas_A ADP-ribosylation factor 96.5 0.0025 8.7E-08 61.1 5.6 59 71-140 17-75 (199)
119 2h57_A ADP-ribosylation factor 96.5 0.0024 8.2E-08 61.2 5.4 57 73-140 23-79 (190)
120 3qq5_A Small GTP-binding prote 96.5 0.0041 1.4E-07 68.7 7.7 65 70-142 33-97 (423)
121 1pui_A ENGB, probable GTP-bind 96.5 0.0069 2.3E-07 58.9 8.6 26 70-95 25-50 (210)
122 1ksh_A ARF-like protein 2; sma 96.5 0.0033 1.1E-07 59.9 6.1 57 70-139 17-73 (186)
123 3reg_A RHO-like small GTPase; 96.5 0.0025 8.6E-08 61.3 5.2 61 70-139 22-82 (194)
124 3zvr_A Dynamin-1; hydrolase, D 96.4 0.0015 5.2E-08 77.0 4.2 33 70-103 50-82 (772)
125 3c5c_A RAS-like protein 12; GD 96.4 0.0031 1.1E-07 60.6 5.8 58 73-139 23-80 (187)
126 1mky_A Probable GTP-binding pr 96.4 0.0025 8.5E-08 70.5 5.7 58 71-139 180-239 (439)
127 3cbq_A GTP-binding protein REM 96.4 0.0038 1.3E-07 60.7 6.3 63 69-139 21-83 (195)
128 3llu_A RAS-related GTP-binding 96.4 0.0097 3.3E-07 57.5 9.2 57 74-140 23-81 (196)
129 1zj6_A ADP-ribosylation factor 96.4 0.0041 1.4E-07 59.4 6.4 58 69-139 14-71 (187)
130 2qag_A Septin-2, protein NEDD5 96.4 0.0024 8.2E-08 69.0 5.2 64 73-140 39-107 (361)
131 2gco_A H9, RHO-related GTP-bin 96.4 0.0037 1.3E-07 60.7 6.2 58 74-140 28-85 (201)
132 3ihw_A Centg3; RAS, centaurin, 96.4 0.0034 1.2E-07 60.3 5.8 58 72-139 21-78 (184)
133 2hxs_A RAB-26, RAS-related pro 96.4 0.0012 4E-08 62.3 2.4 63 70-139 5-67 (178)
134 3oja_B Anopheles plasmodium-re 96.4 0.013 4.5E-07 67.0 11.6 71 630-701 515-585 (597)
135 2a5j_A RAS-related protein RAB 96.4 0.0021 7.2E-08 61.8 4.2 58 73-139 23-81 (191)
136 4dcu_A GTP-binding protein ENG 96.4 0.0038 1.3E-07 69.4 6.8 54 72-139 24-82 (456)
137 2fxo_A Myosin heavy chain, car 96.4 0.31 1E-05 44.8 18.6 105 547-655 17-121 (129)
138 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0028 9.7E-08 68.6 5.6 55 70-138 178-236 (364)
139 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0034 1.2E-07 59.9 5.6 61 70-139 6-66 (184)
140 3b1v_A Ferrous iron uptake tra 96.4 0.0036 1.2E-07 64.9 6.2 55 72-141 4-62 (272)
141 2fv8_A H6, RHO-related GTP-bin 96.4 0.0035 1.2E-07 61.2 5.7 59 73-140 27-85 (207)
142 3cpj_B GTP-binding protein YPT 96.3 0.0025 8.6E-08 63.1 4.6 64 69-140 11-74 (223)
143 1f6b_A SAR1; gtpases, N-termin 96.3 0.0034 1.1E-07 61.1 5.4 56 69-139 24-80 (198)
144 2f7s_A C25KG, RAS-related prot 96.3 0.0024 8.2E-08 62.6 4.4 62 72-138 26-94 (217)
145 2ged_A SR-beta, signal recogni 96.3 0.0013 4.5E-08 63.1 2.4 26 70-95 47-72 (193)
146 1m2o_B GTP-binding protein SAR 96.3 0.0047 1.6E-07 59.6 6.4 56 72-140 24-79 (190)
147 2fu5_C RAS-related protein RAB 96.3 0.0014 4.6E-08 62.3 2.4 62 70-139 7-68 (183)
148 2iwr_A Centaurin gamma 1; ANK 96.3 0.0032 1.1E-07 59.4 4.9 59 71-139 7-65 (178)
149 3gee_A MNME, tRNA modification 96.3 0.0018 6.1E-08 72.7 3.7 61 69-139 232-292 (476)
150 3cnl_A YLQF, putative uncharac 96.3 0.0017 5.9E-08 67.0 3.2 57 73-141 101-157 (262)
151 1mky_A Probable GTP-binding pr 96.3 0.013 4.6E-07 64.6 10.6 56 73-140 3-61 (439)
152 1zd9_A ADP-ribosylation factor 96.3 0.0038 1.3E-07 59.9 5.3 55 73-139 24-78 (188)
153 1jal_A YCHF protein; nucleotid 96.3 0.003 1E-07 68.3 5.1 64 73-139 4-77 (363)
154 2hup_A RAS-related protein RAB 96.3 0.0024 8.2E-08 62.3 3.9 60 72-139 30-89 (201)
155 1moz_A ARL1, ADP-ribosylation 96.2 0.0016 5.3E-08 61.8 2.3 57 70-140 17-74 (183)
156 1nrj_B SR-beta, signal recogni 96.2 0.0023 7.7E-08 62.8 3.5 57 70-140 11-67 (218)
157 2j0v_A RAC-like GTP-binding pr 96.2 0.006 2.1E-07 59.5 6.5 62 70-140 8-69 (212)
158 1gwn_A RHO-related GTP-binding 96.2 0.0045 1.5E-07 60.8 5.6 59 73-140 30-88 (205)
159 2h17_A ADP-ribosylation factor 96.2 0.0054 1.9E-07 58.3 6.0 55 73-140 23-77 (181)
160 3o0z_A RHO-associated protein 96.2 0.9 3.1E-05 43.3 23.0 127 510-644 12-138 (168)
161 2atx_A Small GTP binding prote 96.2 0.0065 2.2E-07 58.2 6.4 60 72-140 19-78 (194)
162 2x77_A ADP-ribosylation factor 96.2 0.0088 3E-07 57.1 7.3 67 62-141 12-79 (189)
163 4gzl_A RAS-related C3 botulinu 96.2 0.0048 1.7E-07 60.2 5.5 60 72-140 31-90 (204)
164 3l0i_B RAS-related protein RAB 96.1 0.0012 4E-08 64.1 1.0 63 70-140 32-94 (199)
165 2hjg_A GTP-binding protein ENG 96.1 0.0048 1.6E-07 68.2 5.9 59 72-139 4-62 (436)
166 1fzq_A ADP-ribosylation factor 96.1 0.0061 2.1E-07 58.2 5.9 58 69-139 14-71 (181)
167 2j1l_A RHO-related GTP-binding 96.1 0.0053 1.8E-07 60.4 5.6 59 72-139 35-93 (214)
168 3ec1_A YQEH GTPase; atnos1, at 96.1 0.0035 1.2E-07 67.9 4.6 57 74-141 165-225 (369)
169 3p32_A Probable GTPase RV1496/ 96.1 0.0047 1.6E-07 66.4 5.5 27 67-93 75-101 (355)
170 1xzp_A Probable tRNA modificat 96.1 0.0058 2E-07 68.6 6.3 59 72-139 244-302 (482)
171 2cjw_A GTP-binding protein GEM 96.1 0.0038 1.3E-07 60.5 4.2 64 70-140 5-68 (192)
172 3bwd_D RAC-like GTP-binding pr 96.1 0.0029 1E-07 59.7 3.2 58 73-139 10-67 (182)
173 2fh5_B SR-beta, signal recogni 96.0 0.0081 2.8E-07 58.6 6.4 59 71-139 7-65 (214)
174 2g3y_A GTP-binding protein GEM 96.0 0.011 3.8E-07 58.7 7.1 63 70-139 36-98 (211)
175 3dz8_A RAS-related protein RAB 96.0 0.003 1E-07 60.7 2.9 59 72-138 24-82 (191)
176 1tq4_A IIGP1, interferon-induc 95.9 0.005 1.7E-07 67.7 4.9 60 70-139 68-131 (413)
177 3geh_A MNME, tRNA modification 95.9 0.0016 5.4E-08 72.8 0.8 60 70-139 224-283 (462)
178 3h2y_A GTPase family protein; 95.9 0.0044 1.5E-07 67.2 4.0 58 73-141 162-224 (368)
179 3r7w_A Gtpase1, GTP-binding pr 95.9 0.0096 3.3E-07 62.6 6.5 59 74-140 6-64 (307)
180 3q3j_B RHO-related GTP-binding 95.9 0.009 3.1E-07 58.9 5.9 60 72-140 28-87 (214)
181 2b6h_A ADP-ribosylation factor 95.8 0.0063 2.2E-07 58.8 4.4 58 69-139 27-84 (192)
182 3ol1_A Vimentin; structural ge 95.7 0.32 1.1E-05 44.0 15.0 97 546-660 16-112 (119)
183 2hjg_A GTP-binding protein ENG 95.7 0.013 4.4E-07 64.7 6.8 61 71-140 175-235 (436)
184 3ol1_A Vimentin; structural ge 95.7 0.18 6E-06 45.8 13.1 81 614-695 17-97 (119)
185 3vkg_A Dynein heavy chain, cyt 95.7 2.5 8.5E-05 57.1 29.0 81 567-658 2017-2097(3245)
186 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.023 7.8E-07 62.1 8.5 65 73-139 22-96 (392)
187 2p67_A LAO/AO transport system 95.6 0.011 3.9E-07 63.1 5.9 26 68-93 53-78 (341)
188 2h5e_A Peptide chain release f 95.6 0.028 9.4E-07 63.8 9.1 68 70-140 12-94 (529)
189 4dcu_A GTP-binding protein ENG 95.5 0.031 1.1E-06 62.0 9.3 59 70-140 194-255 (456)
190 3gj0_A GTP-binding nuclear pro 95.4 0.0044 1.5E-07 61.0 1.7 62 70-139 14-75 (221)
191 2ohf_A Protein OLA1, GTP-bindi 95.3 0.015 5.1E-07 63.6 5.8 70 66-139 18-97 (396)
192 2j37_W Signal recognition part 95.3 0.015 5.1E-07 65.6 5.8 24 69-92 99-122 (504)
193 1lvg_A Guanylate kinase, GMP k 95.3 0.0054 1.9E-07 60.2 1.9 32 73-104 6-40 (198)
194 2qag_C Septin-7; cell cycle, c 95.3 0.021 7.1E-07 62.9 6.7 63 74-140 34-100 (418)
195 1lnz_A SPO0B-associated GTP-bi 95.3 0.011 3.9E-07 63.3 4.4 57 71-139 158-217 (342)
196 4dkx_A RAS-related protein RAB 95.2 0.015 5.1E-07 58.1 5.0 58 74-139 16-73 (216)
197 3a00_A Guanylate kinase, GMP k 95.2 0.0047 1.6E-07 59.7 1.2 23 73-95 3-25 (186)
198 3oja_B Anopheles plasmodium-re 95.2 0.14 4.7E-06 58.4 13.6 41 618-658 538-578 (597)
199 3p26_A Elongation factor 1 alp 95.2 0.026 9E-07 63.1 7.4 28 68-95 30-57 (483)
200 3sjy_A Translation initiation 95.2 0.049 1.7E-06 59.4 9.2 26 69-94 6-31 (403)
201 2xex_A Elongation factor G; GT 95.1 0.032 1.1E-06 65.4 8.0 25 69-93 8-32 (693)
202 2qag_B Septin-6, protein NEDD5 95.1 0.021 7.3E-07 63.0 6.1 27 69-95 40-66 (427)
203 3sop_A Neuronal-specific septi 95.1 0.015 5.1E-07 60.2 4.7 22 73-94 4-25 (270)
204 2wkq_A NPH1-1, RAS-related C3 95.1 0.026 8.7E-07 58.8 6.5 63 70-141 154-216 (332)
205 1kgd_A CASK, peripheral plasma 95.1 0.0085 2.9E-07 57.6 2.4 23 73-95 7-29 (180)
206 3th5_A RAS-related C3 botulinu 94.0 0.0042 1.4E-07 60.3 0.0 60 72-140 31-90 (204)
207 1kk1_A EIF2gamma; initiation o 95.0 0.066 2.2E-06 58.5 9.6 28 68-95 7-34 (410)
208 3tr5_A RF-3, peptide chain rel 95.0 0.018 6.2E-07 65.3 5.2 101 70-178 12-127 (528)
209 2dby_A GTP-binding protein; GD 94.9 0.032 1.1E-06 60.4 6.7 64 73-139 3-80 (368)
210 2ywe_A GTP-binding protein LEP 94.9 0.035 1.2E-06 63.9 7.4 104 70-178 5-118 (600)
211 2qnr_A Septin-2, protein NEDD5 94.9 0.013 4.5E-07 61.5 3.6 21 74-94 21-41 (301)
212 3dpu_A RAB family protein; roc 94.9 0.024 8.2E-07 64.2 5.8 65 70-139 40-109 (535)
213 3ney_A 55 kDa erythrocyte memb 94.8 0.011 3.6E-07 58.6 2.4 24 73-96 21-44 (197)
214 1u0l_A Probable GTPase ENGC; p 94.8 0.022 7.6E-07 59.7 4.9 23 73-95 171-193 (301)
215 3cb4_D GTP-binding protein LEP 94.8 0.038 1.3E-06 63.6 7.2 104 70-178 3-116 (599)
216 2c78_A Elongation factor TU-A; 94.7 0.028 9.5E-07 61.4 5.7 102 69-178 9-120 (405)
217 3swk_A Vimentin; cytoskeleton, 94.7 0.25 8.4E-06 42.2 10.4 77 619-696 2-78 (86)
218 1zun_B Sulfate adenylate trans 94.7 0.06 2.1E-06 59.3 8.3 27 69-95 22-48 (434)
219 3izy_P Translation initiation 94.6 0.0069 2.3E-07 68.9 0.6 93 73-179 6-98 (537)
220 1udx_A The GTP-binding protein 94.6 0.025 8.6E-07 62.2 4.9 57 71-139 157-216 (416)
221 1wb1_A Translation elongation 94.5 0.042 1.4E-06 61.5 6.7 96 72-180 20-120 (482)
222 3c8u_A Fructokinase; YP_612366 94.4 0.021 7.2E-07 56.1 3.6 28 68-95 19-46 (208)
223 3lvq_E ARF-GAP with SH3 domain 94.4 0.036 1.2E-06 62.0 5.9 58 71-141 322-379 (497)
224 3o47_A ADP-ribosylation factor 94.4 0.026 8.8E-07 60.0 4.3 54 73-139 167-220 (329)
225 3u1c_A Tropomyosin alpha-1 cha 94.3 1.5 5E-05 38.5 14.8 8 593-600 45-52 (101)
226 1t9h_A YLOQ, probable GTPase E 94.3 0.015 5.1E-07 61.5 2.2 22 73-94 175-196 (307)
227 3tnu_B Keratin, type II cytosk 94.3 1 3.5E-05 41.2 14.2 88 510-622 35-122 (129)
228 2rdo_7 EF-G, elongation factor 94.2 0.12 4.1E-06 60.6 9.7 72 69-140 8-94 (704)
229 3tif_A Uncharacterized ABC tra 94.1 0.023 8E-07 57.4 3.1 23 73-95 33-55 (235)
230 3j2k_7 ERF3, eukaryotic polype 94.1 0.092 3.2E-06 58.0 8.2 26 70-95 16-41 (439)
231 3tr0_A Guanylate kinase, GMP k 94.0 0.02 7E-07 55.4 2.4 23 73-95 9-31 (205)
232 3izq_1 HBS1P, elongation facto 94.0 0.063 2.1E-06 62.0 6.9 27 69-95 165-191 (611)
233 1dar_A EF-G, elongation factor 94.0 0.082 2.8E-06 61.9 7.9 25 69-93 10-34 (691)
234 3tau_A Guanylate kinase, GMP k 94.0 0.023 7.7E-07 56.0 2.7 24 72-95 9-32 (208)
235 3tnu_A Keratin, type I cytoske 94.0 0.83 2.8E-05 41.9 13.1 88 510-622 37-124 (131)
236 2pcj_A ABC transporter, lipopr 93.9 0.026 8.7E-07 56.7 2.8 23 73-95 32-54 (224)
237 1s0u_A EIF-2-gamma, translatio 93.9 0.1 3.4E-06 57.0 7.9 27 69-95 6-32 (408)
238 1znw_A Guanylate kinase, GMP k 93.8 0.024 8.1E-07 55.7 2.4 23 73-95 22-44 (207)
239 1g7s_A Translation initiation 93.8 0.03 1E-06 64.5 3.5 101 73-180 7-117 (594)
240 1r5b_A Eukaryotic peptide chai 93.7 0.027 9.2E-07 62.8 3.0 39 54-94 28-66 (467)
241 3ghg_A Fibrinogen alpha chain; 93.7 0.92 3.2E-05 50.1 14.7 58 548-605 55-112 (562)
242 1g6h_A High-affinity branched- 93.7 0.031 1.1E-06 57.3 3.1 23 73-95 35-57 (257)
243 2onk_A Molybdate/tungstate ABC 93.7 0.029 1E-06 57.0 2.9 26 69-95 23-48 (240)
244 2i3b_A HCR-ntpase, human cance 93.6 0.025 8.5E-07 55.4 2.2 22 73-94 3-24 (189)
245 2pze_A Cystic fibrosis transme 93.6 0.033 1.1E-06 56.0 3.2 23 73-95 36-58 (229)
246 2yv5_A YJEQ protein; hydrolase 93.6 0.071 2.4E-06 55.9 5.8 20 73-92 167-186 (302)
247 3asz_A Uridine kinase; cytidin 93.6 0.025 8.5E-07 55.3 2.1 25 70-94 5-29 (211)
248 2elf_A Protein translation elo 93.6 0.14 4.7E-06 55.3 8.2 20 73-92 23-42 (370)
249 2cbz_A Multidrug resistance-as 93.5 0.034 1.2E-06 56.3 3.1 23 73-95 33-55 (237)
250 1sgw_A Putative ABC transporte 93.5 0.029 1E-06 56.0 2.6 23 73-95 37-59 (214)
251 1b0u_A Histidine permease; ABC 93.5 0.035 1.2E-06 57.1 3.2 23 73-95 34-56 (262)
252 4g1u_C Hemin import ATP-bindin 93.5 0.034 1.2E-06 57.4 3.1 23 73-95 39-61 (266)
253 4gp7_A Metallophosphoesterase; 93.5 0.036 1.2E-06 52.8 3.1 22 72-93 10-31 (171)
254 3gfo_A Cobalt import ATP-bindi 93.5 0.036 1.2E-06 57.6 3.2 23 73-95 36-58 (275)
255 2yyz_A Sugar ABC transporter, 93.4 0.056 1.9E-06 58.3 4.8 23 73-95 31-53 (359)
256 1ji0_A ABC transporter; ATP bi 93.4 0.036 1.2E-06 56.1 3.1 23 73-95 34-56 (240)
257 1mv5_A LMRA, multidrug resista 93.4 0.037 1.3E-06 56.2 3.2 24 72-95 29-52 (243)
258 1vpl_A ABC transporter, ATP-bi 93.4 0.037 1.3E-06 56.8 3.2 23 73-95 43-65 (256)
259 3b85_A Phosphate starvation-in 93.3 0.029 1E-06 55.7 2.2 22 73-94 24-45 (208)
260 2ff7_A Alpha-hemolysin translo 93.3 0.039 1.3E-06 56.2 3.1 23 73-95 37-59 (247)
261 1zp6_A Hypothetical protein AT 93.3 0.038 1.3E-06 52.9 2.8 23 72-94 10-32 (191)
262 1v43_A Sugar-binding transport 93.3 0.067 2.3E-06 58.0 5.1 23 73-95 39-61 (372)
263 1zo1_I IF2, translation initia 93.3 0.022 7.7E-07 64.1 1.3 92 73-179 6-97 (501)
264 2qi9_C Vitamin B12 import ATP- 93.2 0.041 1.4E-06 56.2 3.2 23 73-95 28-50 (249)
265 2olj_A Amino acid ABC transpor 93.2 0.041 1.4E-06 56.7 3.2 23 73-95 52-74 (263)
266 1z6g_A Guanylate kinase; struc 93.2 0.028 9.6E-07 55.9 1.8 23 73-95 25-47 (218)
267 2d2e_A SUFC protein; ABC-ATPas 93.2 0.041 1.4E-06 56.1 3.1 22 73-94 31-52 (250)
268 3u1c_A Tropomyosin alpha-1 cha 93.2 3.7 0.00013 35.9 15.2 29 559-587 39-67 (101)
269 2nq2_C Hypothetical ABC transp 93.1 0.043 1.5E-06 56.2 3.1 23 73-95 33-55 (253)
270 1n0u_A EF-2, elongation factor 93.1 0.15 5.1E-06 61.0 8.2 27 68-94 16-42 (842)
271 2zu0_C Probable ATP-dependent 93.1 0.044 1.5E-06 56.5 3.2 22 73-94 48-69 (267)
272 1ye8_A Protein THEP1, hypothet 93.1 0.038 1.3E-06 53.4 2.5 23 73-95 2-24 (178)
273 2ixe_A Antigen peptide transpo 93.0 0.044 1.5E-06 56.6 3.1 23 73-95 47-69 (271)
274 1s96_A Guanylate kinase, GMP k 93.0 0.038 1.3E-06 55.3 2.4 23 73-95 18-40 (219)
275 2yz2_A Putative ABC transporte 93.0 0.046 1.6E-06 56.3 3.1 23 73-95 35-57 (266)
276 2ghi_A Transport protein; mult 93.0 0.047 1.6E-06 56.1 3.1 23 73-95 48-70 (260)
277 1jny_A EF-1-alpha, elongation 92.9 0.052 1.8E-06 59.9 3.6 30 69-98 4-33 (435)
278 2ihy_A ABC transporter, ATP-bi 92.9 0.047 1.6E-06 56.7 3.2 23 73-95 49-71 (279)
279 2kjq_A DNAA-related protein; s 92.9 0.037 1.3E-06 51.8 2.1 37 56-94 23-59 (149)
280 3u59_A Tropomyosin beta chain; 92.9 4.1 0.00014 35.5 15.2 16 563-578 43-58 (101)
281 3mca_A HBS1, elongation factor 92.9 0.038 1.3E-06 63.6 2.5 26 68-93 174-199 (592)
282 3c5h_A Glucocorticoid receptor 92.8 0.069 2.4E-06 54.2 4.2 22 73-94 21-51 (255)
283 1d2e_A Elongation factor TU (E 92.8 0.15 5E-06 55.5 6.9 24 71-94 3-26 (397)
284 3swk_A Vimentin; cytoskeleton, 92.7 0.7 2.4E-05 39.4 9.6 68 580-651 16-83 (86)
285 3aez_A Pantothenate kinase; tr 92.7 0.043 1.5E-06 58.0 2.4 26 69-94 88-113 (312)
286 2jeo_A Uridine-cytidine kinase 92.7 0.044 1.5E-06 55.3 2.4 24 71-94 25-48 (245)
287 2dy1_A Elongation factor G; tr 92.6 0.21 7.2E-06 58.2 8.4 26 69-94 7-32 (665)
288 3s84_A Apolipoprotein A-IV; fo 92.5 11 0.00037 38.9 26.9 20 676-695 218-237 (273)
289 3dm5_A SRP54, signal recogniti 92.5 0.16 5.4E-06 56.3 6.8 23 70-92 99-121 (443)
290 1nij_A Hypothetical protein YJ 92.5 0.056 1.9E-06 57.0 3.1 28 70-97 3-30 (318)
291 2eyu_A Twitching motility prot 92.5 0.051 1.8E-06 55.8 2.6 33 60-94 16-48 (261)
292 1f60_A Elongation factor EEF1A 92.4 0.11 3.8E-06 57.6 5.5 29 70-98 6-34 (458)
293 2bdt_A BH3686; alpha-beta prot 92.4 0.048 1.6E-06 52.3 2.2 22 73-94 4-25 (189)
294 2qor_A Guanylate kinase; phosp 92.3 0.034 1.2E-06 54.3 1.0 23 73-95 14-36 (204)
295 2j41_A Guanylate kinase; GMP, 92.3 0.053 1.8E-06 52.4 2.4 23 73-95 8-30 (207)
296 2v3c_C SRP54, signal recogniti 92.3 0.1 3.6E-06 57.6 5.0 24 70-93 98-121 (432)
297 1j8m_F SRP54, signal recogniti 92.2 0.067 2.3E-06 56.1 3.1 23 71-93 98-120 (297)
298 2rcn_A Probable GTPase ENGC; Y 92.2 0.067 2.3E-06 57.7 3.2 23 73-95 217-239 (358)
299 2ocy_A RAB guanine nucleotide 92.2 7.8 0.00027 36.4 19.5 26 615-640 113-138 (154)
300 2efr_A General control protein 92.1 7.9 0.00027 36.5 23.7 88 568-659 60-147 (155)
301 2pjz_A Hypothetical protein ST 92.1 0.07 2.4E-06 54.9 3.2 22 73-94 32-53 (263)
302 1htw_A HI0065; nucleotide-bind 92.1 0.06 2.1E-06 51.1 2.4 27 69-95 31-57 (158)
303 1ex7_A Guanylate kinase; subst 92.1 0.054 1.8E-06 53.0 2.1 33 74-106 4-39 (186)
304 3lnc_A Guanylate kinase, GMP k 92.0 0.052 1.8E-06 54.0 2.0 23 73-95 29-52 (231)
305 2v66_B Nuclear distribution pr 92.0 6.3 0.00022 35.0 15.6 27 615-641 75-101 (111)
306 3nh6_A ATP-binding cassette SU 92.0 0.053 1.8E-06 57.2 2.0 24 72-95 81-104 (306)
307 2xxa_A Signal recognition part 91.9 0.11 3.8E-06 57.4 4.7 24 69-92 98-121 (433)
308 2v9p_A Replication protein E1; 91.9 0.059 2E-06 56.8 2.3 24 72-95 127-150 (305)
309 3u59_A Tropomyosin beta chain; 91.9 5.9 0.0002 34.5 15.2 8 594-601 46-53 (101)
310 2qt1_A Nicotinamide riboside k 91.9 0.093 3.2E-06 51.1 3.6 27 70-96 20-46 (207)
311 2bbs_A Cystic fibrosis transme 91.8 0.072 2.5E-06 55.7 2.8 23 73-95 66-88 (290)
312 2fxo_A Myosin heavy chain, car 91.8 7.5 0.00026 35.4 18.4 110 569-679 11-123 (129)
313 3etw_A Adhesin A; antiparallel 91.7 4.1 0.00014 36.7 13.7 79 554-638 31-109 (119)
314 1kag_A SKI, shikimate kinase I 91.7 0.059 2E-06 50.6 1.9 23 73-95 6-28 (173)
315 4a74_A DNA repair and recombin 91.7 0.064 2.2E-06 52.6 2.1 22 72-93 26-47 (231)
316 3lw7_A Adenylate kinase relate 91.6 0.065 2.2E-06 49.7 2.1 25 73-99 3-27 (179)
317 2bbw_A Adenylate kinase 4, AK4 91.6 0.09 3.1E-06 52.9 3.2 22 71-92 27-48 (246)
318 3kl4_A SRP54, signal recogniti 91.6 0.17 5.7E-06 56.0 5.5 23 70-92 96-118 (433)
319 1jjv_A Dephospho-COA kinase; P 91.5 0.1 3.5E-06 50.7 3.4 22 72-93 3-24 (206)
320 3rlf_A Maltose/maltodextrin im 91.5 0.15 5E-06 55.5 4.9 23 73-95 31-53 (381)
321 4eun_A Thermoresistant glucoki 91.5 0.076 2.6E-06 51.6 2.4 24 71-94 29-52 (200)
322 1np6_A Molybdopterin-guanine d 91.3 0.061 2.1E-06 51.9 1.6 24 71-94 6-29 (174)
323 1sq5_A Pantothenate kinase; P- 91.3 0.073 2.5E-06 55.9 2.2 26 69-94 78-103 (308)
324 1p9r_A General secretion pathw 91.2 0.12 4E-06 56.9 3.9 41 54-94 149-190 (418)
325 4e22_A Cytidylate kinase; P-lo 91.2 0.1 3.5E-06 53.0 3.2 23 70-92 26-48 (252)
326 3tui_C Methionine import ATP-b 91.2 0.099 3.4E-06 56.5 3.2 23 73-95 56-78 (366)
327 2pt7_A CAG-ALFA; ATPase, prote 91.1 0.1 3.4E-06 55.5 3.1 23 73-95 173-195 (330)
328 1z47_A CYSA, putative ABC-tran 91.1 0.1 3.4E-06 56.2 3.1 23 73-95 43-65 (355)
329 3jvv_A Twitching mobility prot 91.0 0.09 3.1E-06 56.6 2.6 26 69-94 121-146 (356)
330 2ehv_A Hypothetical protein PH 90.9 0.11 3.8E-06 51.6 3.0 21 73-93 32-52 (251)
331 3fvq_A Fe(3+) IONS import ATP- 90.9 0.098 3.4E-06 56.4 2.8 23 73-95 32-54 (359)
332 2oap_1 GSPE-2, type II secreti 90.9 0.085 2.9E-06 59.6 2.4 39 56-95 245-284 (511)
333 1rz3_A Hypothetical protein rb 90.9 0.13 4.4E-06 50.2 3.4 26 69-94 20-45 (201)
334 1cke_A CK, MSSA, protein (cyti 90.9 0.095 3.2E-06 51.5 2.5 22 73-94 7-28 (227)
335 3tqc_A Pantothenate kinase; bi 90.8 0.11 3.7E-06 55.2 3.0 25 70-94 91-115 (321)
336 2it1_A 362AA long hypothetical 90.8 0.11 3.9E-06 55.9 3.2 23 73-95 31-53 (362)
337 3uie_A Adenylyl-sulfate kinase 90.8 0.14 4.7E-06 49.8 3.5 28 68-95 22-49 (200)
338 1g29_1 MALK, maltose transport 90.8 0.11 3.8E-06 56.2 3.1 23 73-95 31-53 (372)
339 1uf9_A TT1252 protein; P-loop, 90.7 0.12 4E-06 49.7 2.9 29 70-100 7-35 (203)
340 2if2_A Dephospho-COA kinase; a 90.6 0.11 3.6E-06 50.4 2.4 27 73-101 3-29 (204)
341 1knq_A Gluconate kinase; ALFA/ 90.4 0.11 3.8E-06 48.9 2.4 24 71-94 8-31 (175)
342 1rj9_A FTSY, signal recognitio 90.3 0.11 3.7E-06 54.7 2.4 25 70-94 101-125 (304)
343 1odf_A YGR205W, hypothetical 3 90.2 0.15 5.1E-06 53.2 3.4 26 69-94 29-54 (290)
344 2gza_A Type IV secretion syste 90.1 0.1 3.6E-06 56.0 2.2 23 73-95 177-199 (361)
345 3d31_A Sulfate/molybdate ABC t 90.1 0.1 3.6E-06 55.9 2.1 23 73-95 28-50 (348)
346 1xjc_A MOBB protein homolog; s 89.9 0.084 2.9E-06 50.8 1.1 31 70-100 3-35 (169)
347 3b9q_A Chloroplast SRP recepto 89.9 0.12 4.2E-06 54.2 2.4 23 72-94 101-123 (302)
348 3avx_A Elongation factor TS, e 89.9 0.28 9.5E-06 60.3 5.8 26 69-94 294-319 (1289)
349 2wsm_A Hydrogenase expression/ 89.9 0.13 4.3E-06 50.3 2.4 41 54-94 11-53 (221)
350 3ec2_A DNA replication protein 89.9 0.12 4.2E-06 49.1 2.2 23 72-94 39-61 (180)
351 2f1r_A Molybdopterin-guanine d 89.8 0.069 2.4E-06 51.3 0.3 23 72-94 3-25 (171)
352 3szr_A Interferon-induced GTP- 89.7 0.21 7.2E-06 57.5 4.4 25 71-95 45-69 (608)
353 3kb2_A SPBC2 prophage-derived 89.7 0.16 5.6E-06 47.2 2.9 22 73-94 3-24 (173)
354 2ewv_A Twitching motility prot 89.6 0.14 4.6E-06 55.4 2.6 26 69-94 134-159 (372)
355 3ozx_A RNAse L inhibitor; ATP 89.6 0.16 5.3E-06 57.8 3.2 23 72-94 26-48 (538)
356 2b9c_A Striated-muscle alpha t 89.6 13 0.00045 34.6 16.3 97 510-606 37-139 (147)
357 2vp4_A Deoxynucleoside kinase; 89.6 0.14 4.7E-06 51.1 2.4 25 70-94 19-43 (230)
358 1oxx_K GLCV, glucose, ABC tran 89.5 0.097 3.3E-06 56.3 1.3 23 73-95 33-55 (353)
359 3gd7_A Fusion complex of cysti 89.3 0.16 5.4E-06 55.4 2.8 23 73-95 49-71 (390)
360 3qh9_A Liprin-beta-2; coiled-c 89.3 2.9 0.0001 34.8 9.6 50 549-598 25-74 (81)
361 3e70_C DPA, signal recognition 89.2 0.15 5E-06 54.3 2.5 25 70-94 128-152 (328)
362 2b9c_A Striated-muscle alpha t 88.9 5.2 0.00018 37.4 12.5 72 619-691 40-111 (147)
363 3oja_A Leucine-rich immune mol 88.8 14 0.00047 40.8 18.3 12 458-469 322-333 (487)
364 1yqt_A RNAse L inhibitor; ATP- 88.7 0.2 6.7E-06 56.9 3.2 22 73-94 49-70 (538)
365 1gk4_A Vimentin; intermediate 88.7 5.9 0.0002 33.4 11.6 36 584-623 39-74 (84)
366 3s4r_A Vimentin; alpha-helix, 88.7 8.1 0.00028 33.2 12.6 39 615-653 54-92 (93)
367 3j16_B RLI1P; ribosome recycli 88.6 0.2 6.9E-06 57.7 3.2 22 73-94 105-126 (608)
368 1m1j_A Fibrinogen alpha subuni 88.5 14 0.00047 40.4 16.8 102 554-677 62-163 (491)
369 3oja_A Leucine-rich immune mol 88.3 9.6 0.00033 42.0 16.6 18 641-658 459-476 (487)
370 2og2_A Putative signal recogni 88.3 0.18 6.3E-06 54.2 2.4 23 72-94 158-180 (359)
371 1vht_A Dephospho-COA kinase; s 88.2 0.21 7.4E-06 48.9 2.7 22 72-93 5-26 (218)
372 1ly1_A Polynucleotide kinase; 88.1 0.25 8.6E-06 46.3 3.0 21 73-93 4-24 (181)
373 2w0m_A SSO2452; RECA, SSPF, un 88.1 0.2 6.9E-06 48.8 2.4 22 73-94 25-46 (235)
374 3bk7_A ABC transporter ATP-bin 88.0 0.23 7.8E-06 57.2 3.2 22 73-94 119-140 (607)
375 2p22_C Protein SRN2; endosome, 88.0 2.4 8.2E-05 41.5 10.0 88 564-658 76-171 (192)
376 1lw7_A Transcriptional regulat 88.0 0.17 5.9E-06 54.1 2.0 25 71-95 170-194 (365)
377 2hf9_A Probable hydrogenase ni 87.8 0.26 9E-06 48.2 3.0 41 54-94 19-61 (226)
378 1m1j_B Fibrinogen beta chain; 87.7 18 0.0006 40.0 17.7 24 568-591 132-155 (464)
379 3t61_A Gluconokinase; PSI-biol 87.7 0.22 7.5E-06 48.2 2.4 23 72-94 19-41 (202)
380 2v54_A DTMP kinase, thymidylat 87.7 0.27 9.3E-06 47.2 3.0 28 73-100 6-33 (204)
381 1l8d_A DNA double-strand break 87.5 6.6 0.00023 34.5 11.8 25 615-639 69-93 (112)
382 2yhs_A FTSY, cell division pro 87.5 0.22 7.5E-06 55.9 2.5 23 72-94 294-316 (503)
383 3q8t_A Beclin-1; autophagy, AT 87.4 11 0.00038 32.5 12.8 51 548-598 44-94 (96)
384 3ozx_A RNAse L inhibitor; ATP 87.4 0.27 9.1E-06 55.8 3.2 23 73-95 296-318 (538)
385 1yqt_A RNAse L inhibitor; ATP- 87.1 0.28 9.7E-06 55.6 3.2 23 73-95 314-336 (538)
386 3bk7_A ABC transporter ATP-bin 87.1 0.28 9.6E-06 56.5 3.2 23 73-95 384-406 (607)
387 1x8y_A Lamin A/C; structural p 87.0 5.9 0.0002 33.6 10.6 35 585-623 42-76 (86)
388 3b60_A Lipid A export ATP-bind 86.9 0.27 9.2E-06 56.2 2.9 23 73-95 371-393 (582)
389 3euj_A Chromosome partition pr 86.9 0.25 8.4E-06 55.4 2.5 23 72-94 30-52 (483)
390 3b5x_A Lipid A export ATP-bind 86.9 0.28 9.5E-06 56.1 3.0 24 72-95 370-393 (582)
391 2yl4_A ATP-binding cassette SU 86.8 0.27 9.1E-06 56.4 2.8 23 73-95 372-394 (595)
392 1kht_A Adenylate kinase; phosp 86.8 0.33 1.1E-05 45.9 3.0 21 73-93 5-25 (192)
393 2jaq_A Deoxyguanosine kinase; 86.7 0.33 1.1E-05 46.4 3.0 22 73-94 2-23 (205)
394 3qf4_B Uncharacterized ABC tra 86.7 0.28 9.7E-06 56.3 2.9 24 72-95 382-405 (598)
395 3i00_A HIP-I, huntingtin-inter 86.5 6.6 0.00022 35.4 11.2 25 634-658 95-119 (120)
396 1nks_A Adenylate kinase; therm 86.5 0.32 1.1E-05 46.0 2.7 23 72-94 2-24 (194)
397 3j16_B RLI1P; ribosome recycli 86.3 0.33 1.1E-05 55.9 3.2 24 72-95 379-402 (608)
398 3kta_A Chromosome segregation 86.3 0.54 1.8E-05 44.4 4.2 21 73-93 28-48 (182)
399 2npi_A Protein CLP1; CLP1-PCF1 86.3 0.21 7.3E-06 55.5 1.5 23 73-95 140-162 (460)
400 4a82_A Cystic fibrosis transme 86.2 0.26 9E-06 56.3 2.3 23 73-95 369-391 (578)
401 1cr0_A DNA primase/helicase; R 86.1 0.27 9.3E-06 50.7 2.1 22 73-94 37-58 (296)
402 2eqb_B RAB guanine nucleotide 86.0 16 0.00056 31.6 13.3 47 558-604 13-59 (97)
403 2ze6_A Isopentenyl transferase 85.7 0.39 1.3E-05 48.7 3.0 23 72-94 2-24 (253)
404 2cvh_A DNA repair and recombin 85.7 0.33 1.1E-05 47.1 2.4 21 73-93 22-42 (220)
405 3qf4_A ABC transporter, ATP-bi 85.6 0.32 1.1E-05 55.8 2.6 24 72-95 370-393 (587)
406 2jee_A YIIU; FTSZ, septum, coi 85.5 14 0.00046 31.0 11.7 56 552-607 22-77 (81)
407 3r7w_B Gtpase2, GTP-binding pr 85.5 0.86 3E-05 48.4 5.7 58 74-141 2-59 (331)
408 1n0w_A DNA repair protein RAD5 85.4 0.35 1.2E-05 47.7 2.5 22 73-94 26-47 (243)
409 1gtv_A TMK, thymidylate kinase 85.4 0.19 6.6E-06 48.7 0.5 22 73-94 2-23 (214)
410 3cm0_A Adenylate kinase; ATP-b 85.4 0.43 1.5E-05 45.1 3.0 21 73-93 6-26 (186)
411 1tev_A UMP-CMP kinase; ploop, 85.3 0.44 1.5E-05 45.1 3.0 22 72-93 4-25 (196)
412 3exa_A TRNA delta(2)-isopenten 85.3 0.31 1.1E-05 51.6 2.1 63 73-138 5-68 (322)
413 1svm_A Large T antigen; AAA+ f 85.2 0.36 1.2E-05 52.3 2.6 25 72-96 170-194 (377)
414 2pez_A Bifunctional 3'-phospho 85.2 0.37 1.3E-05 45.5 2.5 23 72-94 6-28 (179)
415 1qhx_A CPT, protein (chloramph 85.1 0.46 1.6E-05 44.6 3.0 22 73-94 5-26 (178)
416 3s4r_A Vimentin; alpha-helix, 85.1 7.5 0.00026 33.4 10.4 54 561-620 20-73 (93)
417 3ake_A Cytidylate kinase; CMP 84.9 0.45 1.6E-05 45.7 3.0 22 73-94 4-25 (208)
418 3vaa_A Shikimate kinase, SK; s 84.9 0.46 1.6E-05 45.9 3.0 25 70-94 24-48 (199)
419 3mq9_A Bone marrow stromal ant 84.7 12 0.00041 41.1 14.8 15 291-305 199-213 (471)
420 2pbr_A DTMP kinase, thymidylat 84.7 0.47 1.6E-05 44.9 3.0 22 73-94 2-23 (195)
421 2plr_A DTMP kinase, probable t 84.7 0.48 1.6E-05 45.5 3.0 23 72-94 5-27 (213)
422 2rhm_A Putative kinase; P-loop 84.6 0.44 1.5E-05 45.2 2.7 22 72-93 6-27 (193)
423 2bwj_A Adenylate kinase 5; pho 84.5 0.46 1.6E-05 45.3 2.7 22 73-94 14-35 (199)
424 2b5u_A Colicin E3; high resolu 84.5 53 0.0018 36.2 22.1 17 632-648 403-419 (551)
425 2z0h_A DTMP kinase, thymidylat 84.4 0.5 1.7E-05 45.0 3.0 22 73-94 2-23 (197)
426 3mq9_A Bone marrow stromal ant 84.3 22 0.00075 38.9 16.7 20 147-166 113-133 (471)
427 1x79_B RAB GTPase binding effe 84.2 15 0.00053 32.6 12.2 77 570-653 5-81 (112)
428 2c95_A Adenylate kinase 1; tra 84.0 0.49 1.7E-05 45.0 2.7 22 72-93 10-31 (196)
429 1nlf_A Regulatory protein REPA 84.0 0.39 1.3E-05 49.2 2.1 21 73-93 32-52 (279)
430 2obl_A ESCN; ATPase, hydrolase 83.9 0.4 1.4E-05 51.3 2.2 36 59-95 60-95 (347)
431 2efl_A Formin-binding protein 83.7 40 0.0014 34.2 28.6 35 433-475 26-60 (305)
432 1via_A Shikimate kinase; struc 83.6 0.48 1.6E-05 44.6 2.4 22 73-94 6-27 (175)
433 1uj2_A Uridine-cytidine kinase 83.5 0.55 1.9E-05 47.3 3.0 24 71-94 22-45 (252)
434 1qf9_A UMP/CMP kinase, protein 83.5 0.53 1.8E-05 44.4 2.7 22 72-93 7-28 (194)
435 1e6c_A Shikimate kinase; phosp 83.4 0.5 1.7E-05 44.0 2.5 22 73-94 4-25 (173)
436 2wwf_A Thymidilate kinase, put 83.3 0.54 1.8E-05 45.4 2.7 22 73-94 12-33 (212)
437 1ukz_A Uridylate kinase; trans 83.3 0.69 2.3E-05 44.5 3.5 24 71-94 15-38 (203)
438 3bos_A Putative DNA replicatio 83.3 0.75 2.6E-05 44.8 3.8 39 56-94 35-75 (242)
439 2x8a_A Nuclear valosin-contain 83.2 0.44 1.5E-05 49.0 2.2 24 70-94 44-67 (274)
440 3r20_A Cytidylate kinase; stru 83.2 0.59 2E-05 47.2 3.0 21 73-93 11-31 (233)
441 2dpy_A FLII, flagellum-specifi 83.1 0.44 1.5E-05 52.7 2.2 36 59-95 146-181 (438)
442 1ixz_A ATP-dependent metallopr 83.1 0.46 1.6E-05 47.6 2.2 24 70-94 49-72 (254)
443 2grj_A Dephospho-COA kinase; T 83.0 0.66 2.3E-05 45.2 3.2 26 69-94 10-35 (192)
444 3s84_A Apolipoprotein A-IV; fo 83.0 45 0.0015 34.2 27.1 43 542-584 102-145 (273)
445 4aby_A DNA repair protein RECN 82.9 0.25 8.6E-06 53.5 0.1 20 73-92 62-81 (415)
446 2iw3_A Elongation factor 3A; a 82.9 0.41 1.4E-05 57.9 2.0 23 73-95 701-723 (986)
447 2yvu_A Probable adenylyl-sulfa 82.8 0.65 2.2E-05 44.1 3.0 25 70-94 12-36 (186)
448 2avr_X Adhesion A; antiparalle 82.7 26 0.0009 31.3 13.1 93 586-682 10-104 (119)
449 1nn5_A Similar to deoxythymidy 82.6 0.59 2E-05 45.1 2.7 22 73-94 11-32 (215)
450 3trf_A Shikimate kinase, SK; a 82.3 0.69 2.3E-05 43.7 3.0 22 73-94 7-28 (185)
451 2pt5_A Shikimate kinase, SK; a 82.3 0.71 2.4E-05 42.8 3.0 21 73-93 2-22 (168)
452 1l8d_A DNA double-strand break 82.3 23 0.00078 30.9 12.8 10 628-637 89-98 (112)
453 3iox_A AGI/II, PA; alpha helix 82.2 32 0.0011 38.0 16.3 25 542-566 26-50 (497)
454 3fb4_A Adenylate kinase; psych 82.2 0.68 2.3E-05 45.0 3.0 21 73-93 2-22 (216)
455 1qhl_A Protein (cell division 82.0 0.14 4.6E-06 51.7 -2.3 23 72-94 28-50 (227)
456 2iw3_A Elongation factor 3A; a 81.9 0.75 2.6E-05 55.7 3.7 21 73-93 463-483 (986)
457 1in4_A RUVB, holliday junction 81.9 0.47 1.6E-05 50.1 1.8 26 69-94 49-74 (334)
458 2px0_A Flagellar biosynthesis 81.8 0.53 1.8E-05 49.1 2.1 22 72-93 106-127 (296)
459 1zuh_A Shikimate kinase; alpha 81.7 0.77 2.6E-05 42.8 3.1 25 70-94 6-30 (168)
460 2iyv_A Shikimate kinase, SK; t 81.7 0.57 2E-05 44.3 2.2 21 73-93 4-24 (184)
461 1y63_A LMAJ004144AAA protein; 81.7 0.75 2.5E-05 43.9 3.0 28 73-100 12-39 (184)
462 3iij_A Coilin-interacting nucl 81.7 0.62 2.1E-05 43.9 2.4 21 73-93 13-33 (180)
463 3cl3_D NF-kappa-B essential mo 81.4 2.2 7.6E-05 38.5 5.6 83 505-608 17-99 (130)
464 3r6n_A Desmoplakin; spectrin r 81.3 69 0.0024 35.2 26.0 128 527-658 71-222 (450)
465 2f6r_A COA synthase, bifunctio 81.2 0.81 2.8E-05 47.2 3.2 22 71-92 75-96 (281)
466 2cdn_A Adenylate kinase; phosp 81.2 0.8 2.7E-05 44.1 3.0 21 73-93 22-42 (201)
467 2e7s_A RAB guanine nucleotide 81.1 4.5 0.00015 37.2 7.7 87 547-644 43-130 (135)
468 1pzn_A RAD51, DNA repair and r 81.1 0.57 1.9E-05 50.0 2.1 23 72-94 132-154 (349)
469 1a7j_A Phosphoribulokinase; tr 81.1 0.52 1.8E-05 49.0 1.7 22 72-93 6-27 (290)
470 1vma_A Cell division protein F 81.1 0.72 2.4E-05 48.4 2.8 25 70-94 103-127 (306)
471 3bas_A Myosin heavy chain, str 81.0 15 0.00051 31.2 10.6 37 571-607 14-50 (89)
472 1iy2_A ATP-dependent metallopr 80.8 0.62 2.1E-05 47.5 2.2 25 70-95 73-97 (278)
473 2e7s_A RAB guanine nucleotide 80.8 3.8 0.00013 37.6 7.1 31 660-690 96-126 (135)
474 4h22_A Leucine-rich repeat fli 80.8 8.3 0.00028 33.7 8.8 72 552-623 4-78 (103)
475 2zqm_A Prefoldin beta subunit 80.8 18 0.00061 31.7 11.6 87 565-658 7-111 (117)
476 1zd8_A GTP:AMP phosphotransfer 80.7 0.76 2.6E-05 45.3 2.7 23 72-94 8-30 (227)
477 3eph_A TRNA isopentenyltransfe 80.5 0.65 2.2E-05 50.8 2.3 23 72-94 3-25 (409)
478 1f2t_A RAD50 ABC-ATPase; DNA d 80.5 0.98 3.3E-05 41.9 3.3 21 72-92 24-44 (149)
479 3tul_A Cell invasion protein S 80.5 36 0.0012 31.4 14.4 98 557-658 20-127 (158)
480 2vli_A Antibiotic resistance p 80.5 0.68 2.3E-05 43.5 2.2 22 73-94 7-28 (183)
481 3a4m_A L-seryl-tRNA(SEC) kinas 80.3 0.92 3.1E-05 46.0 3.3 23 72-94 5-27 (260)
482 3a8t_A Adenylate isopentenyltr 80.2 0.94 3.2E-05 48.3 3.4 25 73-97 42-66 (339)
483 3dl0_A Adenylate kinase; phosp 80.1 0.89 3E-05 44.2 3.0 22 73-94 2-23 (216)
484 1q3t_A Cytidylate kinase; nucl 79.9 0.89 3.1E-05 45.2 3.0 24 70-93 15-38 (236)
485 1ic2_A Tropomyosin alpha chain 79.8 23 0.00078 29.4 11.2 18 586-603 35-52 (81)
486 1m7g_A Adenylylsulfate kinase; 79.7 0.94 3.2E-05 44.1 3.0 23 72-94 26-48 (211)
487 3bas_A Myosin heavy chain, str 79.4 18 0.00062 30.7 10.6 14 522-535 18-31 (89)
488 3ux8_A Excinuclease ABC, A sub 79.4 0.68 2.3E-05 53.7 2.2 20 73-92 350-369 (670)
489 1w5s_A Origin recognition comp 79.3 0.92 3.1E-05 48.4 3.0 26 69-94 50-75 (412)
490 3hnw_A Uncharacterized protein 79.0 17 0.00057 33.6 11.0 16 586-601 104-119 (138)
491 1jbk_A CLPB protein; beta barr 78.7 1 3.5E-05 41.8 2.8 21 74-94 46-66 (195)
492 4eaq_A DTMP kinase, thymidylat 78.6 1.1 3.6E-05 44.8 3.0 23 72-94 27-49 (229)
493 3nwj_A ATSK2; P loop, shikimat 78.6 0.72 2.5E-05 46.9 1.8 22 73-94 50-71 (250)
494 2dr3_A UPF0273 protein PH0284; 78.5 0.98 3.4E-05 44.4 2.7 20 73-92 25-44 (247)
495 1aky_A Adenylate kinase; ATP:A 78.3 1.1 3.8E-05 43.8 3.0 20 73-92 6-25 (220)
496 3d3q_A TRNA delta(2)-isopenten 78.2 1 3.6E-05 48.0 3.0 20 73-92 9-28 (340)
497 3upu_A ATP-dependent DNA helic 78.1 0.66 2.2E-05 51.2 1.4 64 25-92 3-66 (459)
498 3qf7_A RAD50; ABC-ATPase, ATPa 78.0 1.1 3.9E-05 47.9 3.3 21 72-92 24-44 (365)
499 2w58_A DNAI, primosome compone 78.0 1.6 5.6E-05 41.7 4.1 35 58-92 39-75 (202)
500 2jee_A YIIU; FTSZ, septum, coi 77.7 30 0.001 28.9 11.5 75 550-624 6-80 (81)
No 1
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=100.00 E-value=8.1e-95 Score=829.80 Aligned_cols=519 Identities=28% Similarity=0.486 Sum_probs=482.7
Q ss_pred CCCCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccc
Q 005055 38 GPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAP 117 (716)
Q Consensus 38 ~~~~pi~LI~~d~~~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p 117 (716)
..+.|||||.++ +|.|.+|++|+++|..++.|+.+|+|+|++++|||||+|.|+|...||++++++.+||+|||+|+.|
T Consensus 6 ~m~~pv~li~~~-~~~l~~~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~ 84 (592)
T 1f5n_A 6 HMTGPMCLIENT-NGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVP 84 (592)
T ss_dssp -CCSCEEEEEEE-TTEEEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEE
T ss_pred CCCCCeEEEEeC-CCcEEECHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecc
Confidence 346799999987 7999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCceeEEEEeCCCCccccc-CCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHHHHHHHHHHHHHhcC--
Q 005055 118 LKRTALDGTEYNLLLLDSEGIDAYDQ-TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG-- 194 (716)
Q Consensus 118 ~~~~~~~g~~~~vvlLDTEGl~~~~~-~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~-- 194 (716)
++. +....++|+||+|+++... +..+|+++|+|+++|||++|||+.|.|++++++.|++++++++.++.++++
T Consensus 85 ~~~----~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~ 160 (592)
T 1f5n_A 85 HPK----KPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDE 160 (592)
T ss_dssp CSS----STTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC---
T ss_pred ccc----CCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHhhhhhcccCccc
Confidence 864 2346799999999988776 667899999999999999999999999999999999999999999887652
Q ss_pred ---CCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhHHHHHHHhhCCCCeEEeecC
Q 005055 195 ---GKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVR 271 (716)
Q Consensus 195 ---~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~i~~~F~~~~cf~l~~ 271 (716)
+..+..+++.|||+|+||||||++++..+|+++|+++||+++|+..+|.++.+...|.+|.+|++|||+++||+|||
T Consensus 161 ~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~~g~~~t~~eyLe~~L~~~~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~ 240 (592)
T 1f5n_A 161 NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDR 240 (592)
T ss_dssp ----CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred ccccccchhhhhccCCceEEEEecccchhccCCCCCCHHHHHHHHHhhccCCChhhHhhhhHHHHHHHhCCCCcEEEeCC
Confidence 22345567889999999999999999889999999999999999999988999999999999999999999999999
Q ss_pred CCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHH
Q 005055 272 PLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSV 350 (716)
Q Consensus 272 P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltG~~l~~l~~~yv~ain~g~vP~i~s~~~~~ 350 (716)
|+.+. .+++|+.++.++|+|+|+++++.||++|++.++||++ +|.++||++|+.|++.||+|||+|.+|+++|+|.++
T Consensus 241 P~~~~-~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~ 319 (592)
T 1f5n_A 241 PVHRR-KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLAL 319 (592)
T ss_dssp CSCGG-GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHH
T ss_pred CCcHH-HHhhhccCChhhCCHHHHHHHHHHHHHHHccccceeecCCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHH
Confidence 99988 8999999999999999999999999999999999999 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CCCCh-HHHHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 005055 351 EEAECRRAYDSATETYMSTFDRS--KPPEE-VALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKK 427 (716)
Q Consensus 351 ~e~e~~~a~~~A~~~Y~~~m~~~--~p~~e-~eL~~~H~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~l~~~~e~~~~ 427 (716)
++.+|.+|+++|+++|.+.|.+. +|.++ ++|.+.|..|.++|+++|++.+|| +..++|+++|...|.+.+++|++
T Consensus 320 a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~--d~~~~~~~~L~~~i~~~~~~~~~ 397 (592)
T 1f5n_A 320 AQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCK 397 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 36655 899999999999999999999997 56789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhccCCCCchHHHHHHHHHHHHHHhccc-CCCchhHHHHHHHh--hhccchHHH
Q 005055 428 NVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILD 500 (716)
Q Consensus 428 ~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~l~~ll~eY~~~~-~GP~K~~~L~~FLq--~~~~~~il~ 500 (716)
.|+.+|..+|+++|+. |+++|+++.+..+++|+.|.++++.++.+|+..| +||.++.+|++||+ ..++++|++
T Consensus 398 ~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq 477 (592)
T 1f5n_A 398 QNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 477 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 5666677888889999999999999999999999 89999999999998 666799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005055 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR 565 (716)
Q Consensus 501 ~~k~l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~ 565 (716)
+|+.|+++ ++++++.+++.++++.+.+.|++++.+.++.|+.++++|+++|.+|+++||+-+.+
T Consensus 478 ~d~~l~~~-~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~ 541 (592)
T 1f5n_A 478 TDQTLTEK-EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541 (592)
T ss_dssp HCSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999876655
No 2
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=3.7e-89 Score=755.76 Aligned_cols=382 Identities=21% Similarity=0.307 Sum_probs=348.8
Q ss_pred CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHhh-------CC---------CC
Q 005055 37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLL-------GR---------SS 96 (716)
Q Consensus 37 ~~~~~pi~LI~~d~~~~l~v~~eAl~-~L~~---i~~pV~VVsV~G~~rtGKS~LlN~ll-------g~---------~~ 96 (716)
+.+++|||||+++++|+|.||++|++ +|.. +++||+||||+|++|||||||||+|+ |. ..
T Consensus 29 ~~~~~pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~ 108 (457)
T 4ido_A 29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108 (457)
T ss_dssp --CCCEEEEEEECTTSCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCC
T ss_pred cCCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCC
Confidence 57899999999988899999999999 5655 47899999999999999999999775 22 57
Q ss_pred ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhh
Q 005055 97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (716)
Q Consensus 97 gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (716)
||+||++++|||+|||||+.|+....|+|++++||||||||+++.+.+.++|++||+|++||||++|||++|+|++++|+
T Consensus 109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~ 188 (457)
T 4ido_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (457)
T ss_dssp SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred CceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHH
Confidence 99999999999999999999998878899999999999999999988888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhHHHHH
Q 005055 177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS 256 (716)
Q Consensus 177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~ 256 (716)
+|++|+++++.|.. +.+..|||+|+||||||+++++.+|..+|+++||+++|+..+|.. .+.|.+|++
T Consensus 189 ~L~~~tel~~~i~~---------~~~~~~Fp~f~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~~~g~~---~~~~~iR~~ 256 (457)
T 4ido_A 189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQH---EELQNVRKH 256 (457)
T ss_dssp HHHHHHHHHHHHSC---------CCSSCSEEEEEEEEETCCCTTTSCSBHHHHHHHHHHHHCCCTTSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---------hcccccCCceEEEEecCCccccccCCCCCHHHHHHHHhccCCCCC---HHHHHHHHH
Confidence 99999999998741 235678999999999999999888889999999999999887754 457889999
Q ss_pred HHhhCCCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHhcc--CCccccCCcccchhhHHHHHHHHHHH
Q 005055 257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER--TRPKQVGATVLTGPVLIGITESYLDA 334 (716)
Q Consensus 257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~~~--~~pK~~~g~~ltG~~l~~l~~~yv~a 334 (716)
|++|||+++||+||||+.++..+++++ .+.++|+|+|+++++.||++|++. ++||+++|.+|||++|+.|++.||+|
T Consensus 257 I~~~F~~~~Cf~lp~P~~~~~~~~~~~-~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~i~G~~vtg~~L~~lv~~Yv~a 335 (457)
T 4ido_A 257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI 335 (457)
T ss_dssp HHHHEEEEEEEECCCCCHHHHHCTTCC-CCGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEEcCCCchhhhhchhhh-cChhhCCHHHHHHHHHHHHHHhccccccccccCCEeecHHHHHHHHHHHHHH
Confidence 999999999999999998776666664 367899999999999999999984 55999999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CC-CChHHHHHHHHHHHHHHHHHhhhcc-CCChhhhH
Q 005055 335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KP-PEEVALGEAHEAAVQKALAVYNAGA-VGVGLARK 408 (716)
Q Consensus 335 in~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~~m~~~----~p-~~e~eL~~~H~~~~~~Al~~F~~~s-~g~~~~~~ 408 (716)
||+|.+||++|+|.++++++|.+|+++|+++|.+.|.+. +| .++++|++.|..|+++|+++|++.+ +|..+..+
T Consensus 336 in~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~ 415 (457)
T 4ido_A 336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415 (457)
T ss_dssp HHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999999999999999999999999999999874 35 3679999999999999999999886 78888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005055 409 KYEGLLQKFFRKAFEDHKKNVYM 431 (716)
Q Consensus 409 ~~~~~L~~~l~~~~e~~~~~n~~ 431 (716)
+|+++|...|++++++|++.|+.
T Consensus 416 ~~~~~L~~~l~~~~~~~~~~Ne~ 438 (457)
T 4ido_A 416 RYLQQLESEIDELYIQYIKHNDS 438 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999964
No 3
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=1.1e-79 Score=684.23 Aligned_cols=382 Identities=21% Similarity=0.305 Sum_probs=345.9
Q ss_pred CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHhhCC----------------CC
Q 005055 37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLLGR----------------SS 96 (716)
Q Consensus 37 ~~~~~pi~LI~~d~~~~l~v~~eAl~-~L~~---i~~pV~VVsV~G~~rtGKS~LlN~llg~----------------~~ 96 (716)
...++|||||.++++|+|.||++|++ +|.. ++.||+||||+|++|+|||||||+|+|. .+
T Consensus 29 ~~~~~piqlv~~~~~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~ 108 (447)
T 3q5d_A 29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108 (447)
T ss_dssp CCCCCEEEEEEECTTSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCC
T ss_pred ccCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccc
Confidence 47789999999988899999999995 7765 5789999999999999999999999973 57
Q ss_pred ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhh
Q 005055 97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (716)
Q Consensus 97 gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (716)
||+||+|+++||+|||||+.|+....|+|++++||||||||+++.+.+.++|++||+|++||||++|||++|.|++++++
T Consensus 109 ~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~ 188 (447)
T 3q5d_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (447)
T ss_dssp SSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHH
T ss_pred eecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHH
Confidence 99999999999999999999998877889889999999999998888888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhHhhhHHHHH
Q 005055 177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS 256 (716)
Q Consensus 177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~l~~~g~~~t~~eyLe~~L~~~~g~~~~~~~~n~iR~~ 256 (716)
+|++|+++++++.. ..+..+||+|+||||||++++..+|+.+|+++||+++|+..++. ..+.|.+|++
T Consensus 189 ~L~~~~e~~~~~~~---------~~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~~~~---~~~~~~~r~~ 256 (447)
T 3q5d_A 189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQ---HEELQNVRKH 256 (447)
T ss_dssp HHHHHHHHHHHTSC---------CCSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSSTTC---SSSSCCHHHH
T ss_pred HHHHHHHHHHHHHH---------hhcccCCCceEEEEeeccccccccCCCCCHHHHHHHHHhhccCc---cHHHHHHHHH
Confidence 99999999987631 12356799999999999999888777789999999999977543 4456789999
Q ss_pred HHhhCCCCeEEeecCCCCChhhhhcccCCCCCCCChHHHHHHHHHHHHHhc--cCCccccCCcccchhhHHHHHHHHHHH
Q 005055 257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE--RTRPKQVGATVLTGPVLIGITESYLDA 334 (716)
Q Consensus 257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~l~~l~~~i~~--~~~pK~~~g~~ltG~~l~~l~~~yv~a 334 (716)
|++|||+++||+||||+.+......++ .+.++|+|+|+++++.||++|++ +.+||.++|.+|||++|+.|++.||++
T Consensus 257 i~~~F~~~~cf~lp~P~~~v~~~~~~~-~~l~~L~~~F~~~l~~l~~~i~~~~~~~~K~~~G~~vtg~~L~~~~~~yv~a 335 (447)
T 3q5d_A 257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI 335 (447)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHCTTCC-SBGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred HHHhCCCceEEeccCcccchhhhhhhh-cchhhccHHHHHHHHHHHHHhcCcccccccccCCEeecHHHHHHHHHHHHHH
Confidence 999999999999999997654444443 36789999999999999999996 467888999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CCC-ChHHHHHHHHHHHHHHHHHhhhcc-CCChhhhH
Q 005055 335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KPP-EEVALGEAHEAAVQKALAVYNAGA-VGVGLARK 408 (716)
Q Consensus 335 in~g~vP~i~s~~~~~~e~e~~~a~~~A~~~Y~~~m~~~----~p~-~e~eL~~~H~~~~~~Al~~F~~~s-~g~~~~~~ 408 (716)
||+|.+|+++|+|+++++.+|.+|+++|++.|.+.|++. .|+ ++++|.+.|..++++|++.|+..+ +|..++.+
T Consensus 336 in~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~ 415 (447)
T 3q5d_A 336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415 (447)
T ss_dssp HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHH
T ss_pred HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999999999873 343 679999999999999999999986 88889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005055 409 KYEGLLQKFFRKAFEDHKKNVYM 431 (716)
Q Consensus 409 ~~~~~L~~~l~~~~e~~~~~n~~ 431 (716)
+|+++|...|++.+++|++.|+.
T Consensus 416 ~~~~~L~~~l~~~~~~~~~~Ne~ 438 (447)
T 3q5d_A 416 RYLQQLESEIDELYIQYIKHNDS 438 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999965
No 4
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=99.42 E-value=8.5e-13 Score=122.93 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=84.0
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSR----STAAEARLAAAREQ 639 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r----~~~~eerl~~~~~q 639 (716)
+||+.|+.++.......++.|.++|.|++++++.++.+ |+..+..+..+..+|++++.+ +..+...++.++.+
T Consensus 11 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEA 90 (129)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999998 899999999999999999987 67888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005055 640 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678 (716)
Q Consensus 640 l~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~ 678 (716)
+..++.|++++.++|+.+| ++|.+||.+|++||+|||+
T Consensus 91 L~~~r~e~~~ql~EYq~Ll-nvKl~Ld~EIatYRkLLEg 128 (129)
T 3tnu_B 91 LQKAKQDMARLLREYQELM-NTKLALDVEIATYRKLLEG 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHCc
Confidence 9999999999999999999 8999999999999999974
No 5
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=122.05 Aligned_cols=111 Identities=22% Similarity=0.278 Sum_probs=79.1
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSR----STAAEARLAAAREQ 639 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~~r----~~~~eerl~~~~~q 639 (716)
+||+.|+.++.......++.+.+++.|++++++.++.+ |+..+..+..+..+|++++.+ +..++..++.++.+
T Consensus 13 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 13 EWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 899999999999999999987 67888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005055 640 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678 (716)
Q Consensus 640 l~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~ 678 (716)
+..++.|++++.++|+.++ ++|.+||.+|++||+|||+
T Consensus 93 L~~~r~em~~ql~EYq~Ll-~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 93 LAQLRCEMEQQNQEYKILL-DVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHCc
Confidence 9999999999999999999 8999999999999999974
No 6
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=98.94 E-value=4.5e-09 Score=90.34 Aligned_cols=74 Identities=11% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005055 605 LTKQKAMEDQVCSEIEVLKSR----STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679 (716)
Q Consensus 605 i~~~k~~~~~~~~~i~~l~~r----~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~ 679 (716)
|+..+..+..+..+|++++.+ ...++..++.++.++..++.|++.+.++|+.++ ++|.+||.+|+|||++||+-
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll-nvK~~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL-NVKMALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHcCC
Confidence 455666677788888888876 667788899999999999999999999999999 89999999999999999864
No 7
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=98.82 E-value=1.2e-08 Score=88.12 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005055 612 EDQVCSEIEVLKSR----STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQ 680 (716)
Q Consensus 612 ~~~~~~~i~~l~~r----~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q 680 (716)
...+...|++++.+ +..+...++.++.++..++.|++++.++|+.++ ++|.+||.+|++||++||+-.
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll-nvK~~Le~EIatYRkLLEGEe 83 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRKLLEGEE 83 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHcCCc
Confidence 33445555555544 445667788888999999999999999999999 899999999999999999754
No 8
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=98.59 E-value=1.3e-07 Score=75.61 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005055 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678 (716)
Q Consensus 626 ~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~ 678 (716)
+..++..++.++.++..++.|++.+.++|+.++ ++|.+||.+|++||+++|+
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll-niK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLL-NVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHcc
Confidence 457888999999999999999999999999999 8999999999999999985
No 9
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=98.59 E-value=5.1e-08 Score=85.42 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005055 608 QKAMEDQVCSEIEVLKSR----STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679 (716)
Q Consensus 608 ~k~~~~~~~~~i~~l~~r----~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~ 679 (716)
.++..+.+.+++.+++.+ ....++.++.++.++..++.+++.+.++|+.++ ++|.+||.+|++||+|+++.
T Consensus 17 Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-nvKl~Le~EIatYrkLLEGE 91 (95)
T 3mov_A 17 GQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL-DVKLALDMEISAYRKLLEGE 91 (95)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccC
Confidence 333344455555555543 446677788889999999999999999999999 89999999999999999753
No 10
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=98.36 E-value=9.3e-07 Score=73.69 Aligned_cols=52 Identities=12% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005055 627 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679 (716)
Q Consensus 627 ~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~ 679 (716)
......++.++.++..++.|++.+.++|+.++ ++|.+||.+|++||++||.-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-niKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 36677788888999999999999999999999 89999999999999999864
No 11
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.82 E-value=0.049 Score=63.83 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=27.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCccc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT 108 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~T 108 (716)
.+-..|+|+|.+++|||+|+|.|+|.. -++++. .|||
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~-~~~v~~--~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN-LLPSDV--NPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS-CSCCCC--CTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCC--CCCc
Confidence 344569999999999999999999874 233433 3555
No 12
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.81 E-value=4.4e-05 Score=78.06 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=40.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccc----cCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g----~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
.-|+|+|..++|||+|+|.|+|.. .|..+ +++..|..|.+.|. ...+.|+||+|+.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~-----------~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWD-----------KCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEET-----------TEEEEEEECCSCSSTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEEC-----------CcEEEEEECCCCCCCC
Confidence 348899999999999999999875 23222 23444556666653 2568999999996443
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.78 E-value=7.6e-05 Score=78.90 Aligned_cols=62 Identities=32% Similarity=0.476 Sum_probs=45.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..|-+.|+|+|..++|||+|+|+|+|.. |...+ ++.....|+..+. ....++|+||+|+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~--~~i~s~~~~tT~~~~~~~~~~~----------~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK--VSIISPKAGTTRMRVLGVKNIP----------NEAQIIFLDTPGIYEP 72 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET----------TTEEEEEEECCCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC--ccccCCCCCceeeEEEEEEecC----------CCCeEEEEECcCCCcc
Confidence 4578999999999999999999999986 43222 2223345665542 1367999999998643
No 14
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.76 E-value=0.0001 Score=75.29 Aligned_cols=61 Identities=18% Similarity=0.385 Sum_probs=43.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccC----CCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
+..-|+|+|..++|||+|+|+|+|.. +|..+.. +..+..|+..|. | ..+.|+||+|+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWG---------N--REIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEET---------T--EEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeC---------C--CEEEEEECcCCCCCC
Confidence 44568999999999999999999874 4544332 233344555552 2 568999999986543
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.67 E-value=0.012 Score=57.54 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=75.4
Q ss_pred HHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005055 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV-------LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL 641 (716)
Q Consensus 569 l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~-------i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~ 641 (716)
|+.+...++.+..-+...+..++.|..+|+.+|+.+ ++..++.-..+......|+.++..+|-..-+++++.-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444455555555666666666666667777777766 3444444444555555555667777777777778877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Q 005055 642 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV 685 (716)
Q Consensus 642 ~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~ 685 (716)
.+-.=.++.-.||..++ +..|.||-++.--+.+-++.|-=-|+
T Consensus 127 ~~~~SleD~e~kln~ai-Er~alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 127 ATIMSLEDFEQRLNQAI-ERNAFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888899999999 99999999998655554444433333
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.66 E-value=0.00014 Score=73.29 Aligned_cols=61 Identities=26% Similarity=0.445 Sum_probs=38.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
+..-|+|+|+.++|||+|+|.|+|... |..+. +...+..+...|. | ..+.|+||+|+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWK---------E--TELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEET---------T--EEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeC---------C--ceEEEEECCCccCCC
Confidence 445689999999999999999999762 22221 2222333333331 2 468899999996543
No 17
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.53 E-value=0.00011 Score=77.46 Aligned_cols=57 Identities=30% Similarity=0.560 Sum_probs=41.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccc-cc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~-g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+-.+|+|+|+.++|||+|+|+|+|.. +.. ++ ++.....|+..|. ...+.|+||+|+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~--~~i~s~~~~tTr~~~~gi~~~~-----------~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK--ISITSRKAQTTRHRIVGIHTEG-----------AYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS--EEECCCCSSCCSSCEEEEEEET-----------TEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCCCcceeeEEEEEEEC-----------CeeEEEEECcCCC
Confidence 45689999999999999999999986 432 21 2222335776552 2568899999975
No 18
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.51 E-value=0.00034 Score=69.80 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=41.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
...-|.|+|..++|||+|+|+|++.. |.+.+ ....|+++....... ....+.|+||+|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~--~~~~~-~~~~t~~~~~~~~~~-------~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN--VDVQS-YSFTTKNLYVGHFDH-------KLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC--EEEEC-C-----CEEEEEEEE-------TTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCC-CCCcceeeeeeeeec-------CCCeEEEEECCCCcC
Confidence 34568999999999999999999876 65443 234566665543322 126789999999854
No 19
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.50 E-value=0.00014 Score=76.77 Aligned_cols=58 Identities=28% Similarity=0.478 Sum_probs=41.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccc-cc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~-g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
....|+|+|..++|||+|+|+|+|.. |.. .+ ++.....|++.|. .+.+.|+||+|+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~--~~ivs~~~~tTr~~i~~i~~~~-----------~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK--VAPISPRPQTTRKRLRGILTEG-----------RRQIVFVDTPGLHK 67 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET-----------TEEEEEEECCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc--eeeecCCCCceeEEEEEEEEeC-----------CcEEEEecCccccc
Confidence 45679999999999999999999986 432 21 2233345666542 26789999999853
No 20
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.49 E-value=0.00026 Score=69.83 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=42.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+...|+|+|..++|||+|+|+|+|...-..+ +....+|..+-...... .....+.|+||+|++..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-SKTPGRTQHINYFSVGP------AAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-TCCCCSCCCEEEEEESC------TTSCSEEEEECCCCCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceee-cCCCCcccceEEEEecC------CCCCcEEEEcCCCCCcc
Confidence 3456889999999999999999987521122 22334566654433221 12356899999998654
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.47 E-value=0.00016 Score=66.98 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=35.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|.|+|+.++|||+|+|+|++.. |.......++|.....+...+ ++ ..+.++||+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR--SAVVADVPGVTRDLKEGVVET-----DR--GRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC--C-----------CCEEEEEEE-----TT--EEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--eeeccCCCCceecceEEEEEe-----CC--ceEEEEECCCCCC
Confidence 47899999999999999999876 332222233444444333221 22 4688999999854
No 22
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.45 E-value=0.00037 Score=66.71 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=39.8
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
..-|.|+|+.++|||+|+|+|++.. +...+....+|..+..+.. + ..+.++||+|++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~~~~~~-------~---~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSINFYLV-------N---SKYYFVDLPGYGY 80 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCEEEEEE-------T---TTEEEEECCCBSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCeEEEEE-------C---CcEEEEECCCCcc
Confidence 3458899999999999999999886 3333333345555544322 1 2477999999854
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.43 E-value=0.0095 Score=61.28 Aligned_cols=21 Identities=5% Similarity=0.068 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005055 628 AAEARLAAAREQALSAQEEVE 648 (716)
Q Consensus 628 ~~eerl~~~~~ql~~ak~E~~ 648 (716)
.+++.+..+.+.+...+.+..
T Consensus 122 ~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 122 RKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 24
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.42 E-value=0.00024 Score=73.48 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
.-|+|+|..++|||+|+|.|+|.. .|.... +....|.|+-.....+. .+|..+.+.|+||+|+++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIK---EGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEEC---C--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEe---cCCeEEEEEEEECCCcccc
Confidence 348899999999999999999874 232221 11123444433332221 2455578999999999643
No 25
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.36 E-value=0.00032 Score=72.30 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..+-.-|.|+|..++|||+|+|.|+|..- +.+++ ..++|........ +.....+.|+||+|++..
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~-~~~~t~~~~~~~~-------~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERV-VSISP-FQSEGPRPVMVSR-------SRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCS-SSCCCSSCEEEEE-------EETTEEEEEEECCCSEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeeEEEEE-------eeCCeEEEEEECCCCCCC
Confidence 34556789999999999999999998762 12222 2233432222211 112367999999998654
No 26
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.30 E-value=0.00041 Score=71.24 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=41.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
.+-.-|+|+|..++|||+|+|.|+|....+ +++ ..++|...-.....+ + ...+.|+||+|+++..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~-~~~~t~~~~~~~~~~-----~--~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSP-FQAEGLRPVMVSRTM-----G--GFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCS-SCC-CCCCEEEEEEE-----T--TEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCCcceeeEEEEEEE-----C--CeeEEEEECCCCCCcc
Confidence 355678999999999999999999976322 222 223333222111111 1 2578999999986543
No 27
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.25 E-value=0.00046 Score=64.36 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=36.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccc--ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~--g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|+.++|||+|+|+|++.. |.. .++....+...+. .++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~---------~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT--FRESYIPTVEDTYRQVIS---------CDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC--CCSSCCCCSCEEEEEEEE---------ETTEEEEEEEEECCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEE---------ECCEEEEEEEEECCCch
Confidence 47899999999999999999865 421 2222222221111 13445789999999964
No 28
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.17 E-value=0.0009 Score=64.26 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=36.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
+..-|.|+|+.++|||+|+|+|++..---.+.++ ..+|..+..+.. ++ .+.|+||+|++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~-------~~---~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYII-------ND---ELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEE-------TT---TEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEEEEE-------CC---cEEEEECCCCCccc
Confidence 4556899999999999999999987511112222 224555443321 11 47889999986543
No 29
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.13 E-value=0.0011 Score=82.39 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=24.5
Q ss_pred CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHH
Q 005055 52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQ 90 (716)
Q Consensus 52 ~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~ 90 (716)
|-|.|-..|-..+..-..+=+ |-|.|..|+|||.-...
T Consensus 151 Hi~aia~~ay~~m~~~~~~Q~-i~isGeSGaGKTe~~k~ 188 (1184)
T 1i84_S 151 HIYAIADTAYRSMLQDREDQS-ILCTGESGAGKTENTKK 188 (1184)
T ss_dssp CHHHHHHHHHHHHHHHTCCEE-EECCCSTTSSTTHHHHH
T ss_pred cHhhhHHHHHHHHHhcCCCcE-EEEecCCCCCccHHHHH
Confidence 445566666666655445554 45889999999954433
No 30
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.12 E-value=0.00026 Score=76.28 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=22.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+-.|+|+|.+++|||+|+|.|.|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33489999999999999999999965
No 31
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.10 E-value=0.0006 Score=70.31 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=41.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+...|+|+|+.++|||+|+|.|.|.. |.+|+.. ..|.........+ ++ ..+.++||+|+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~-~~t~~~~~~~~~~-----~~--~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR--QHVGNWP-GVTVEKKEGIMEY-----RE--KEFLVVDLPGIYSL 63 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC--EEEEECT-TSSCEEEEEEEEE-----TT--EEEEEEECCCCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeEEEeeEEEEEE-----CC--ceEEEEeCCCcccc
Confidence 34578999999999999999999986 5655431 2233222221111 12 45889999998654
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.08 E-value=0.00048 Score=64.06 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=38.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|+.++|||+|+|+|++.. |... ...|.|.-.....+. .++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND--FAEN---KEPTIGAAFLTQRVT---INEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEE---ECCEEEEEEEEECCCCh
Confidence 48899999999999999999765 4321 123444333222221 13445789999999964
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.07 E-value=0.11 Score=53.34 Aligned_cols=9 Identities=0% Similarity=-0.034 Sum_probs=3.2
Q ss_pred HHhhcHHHH
Q 005055 518 LKYRSIEDN 526 (716)
Q Consensus 518 ~k~~s~e~e 526 (716)
..+..++++
T Consensus 32 ~el~~le~~ 40 (256)
T 3na7_A 32 KDLDKALND 40 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 34
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.07 E-value=0.00044 Score=65.19 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=40.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.++||+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC--CCC-------CCSEEEEEEEEE---ETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 34568999999999999999999765 4321 123445443332221 13555789999999953
No 35
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.07 E-value=0.00057 Score=70.27 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=40.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
.|+|+|..++|||+|+|.|.|.. +.+++.. ..|.........+ +| ..+.|+||+|+.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~p-g~Tv~~~~~~~~~-----~~--~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN--QRVGNWP-GVTVEKKTGEFLL-----GE--HLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS--EEEEECT-TSSSEEEEEEEEE-----TT--EEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCccCCC-CceEEEEEEEEEE-----CC--eEEEEEeCCCccccc
Confidence 58899999999999999999986 6665431 2332222221111 12 478999999986543
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.06 E-value=0.0014 Score=81.52 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.9
Q ss_pred ceeEEEEeCCCCcccc
Q 005055 127 EYNLLLLDSEGIDAYD 142 (716)
Q Consensus 127 ~~~vvlLDTEGl~~~~ 142 (716)
...|=+||.-||..++
T Consensus 457 ~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFE 472 (1184)
T ss_dssp CEEEEEEECCCCCCCS
T ss_pred cceEEEeecCCcCCCC
Confidence 4678888998886554
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00062 Score=64.31 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=41.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|+|+|..++|||+|+|+|++.. |..... ..|.|+-.....+. .++..+.+.++||+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~--~~t~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA--FLAGTF--ISTVGIDFRNKVLD---VDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCCCCC--CCCCSCEEEEEEEE---ETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--CCCCCc--CCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 44568999999999999999999876 432221 23444443332221 24556789999999964
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.05 E-value=0.00055 Score=63.81 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=39.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|.|+|+.++|||+|+|+|++.. |... ...|.|.-.....+. .++..+.+.++||+|..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS--FDPN---INPTIGASFMTKTVQ---YQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCceeEEEEEEEEE---ECCeEEEEEEEcCCCch
Confidence 458999999999999999999876 3211 123444433322221 12445789999999974
No 39
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.04 E-value=0.00072 Score=69.56 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=41.6
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
-..|+|+|..++|||+|+|+|.|.. |.+++.. ..|......... ...+.+.|+||+|..+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~p-g~tv~~~~~~~~-------~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWP-GVTVEKKEGVFT-------YKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEEEE-------ETTEEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCC-CceEEEEEEEEE-------ECCeEEEEEECCCcCccC
Confidence 3468999999999999999999976 6555431 233332222111 112678999999986543
No 40
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.03 E-value=0.001 Score=68.94 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=40.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
..|+|+|..++|||+|+|+|.|.. |.+++.. ..|.........+ ++ ..+.|+||+|..+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~-g~t~~~~~~~~~~-----~~--~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWA-GVTVERKEGQFST-----TD--HQVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--EEEEECT-TSSSEEEEEEEEC-----SS--CEEEEEECCCCSCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeeEEEEEEEEEe-----CC--CceEEEECcCCCccc
Confidence 358999999999999999999986 6666432 2232221111111 12 468889999987654
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=62.20 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=34.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|+|+|+.++|||+|+|+|.|.. |..... |.|.=.....+ ..++..+.+.++||.|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~--~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQ--ERDLHE----QLGEDVYERTL---TVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------CC----CSSSSEEEEEE---EETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCC--CccccC----ccccceeEEEE---EECCEEEEEEEEecCCCCc
Confidence 34568999999999999999999875 432211 12211111111 1134557899999999753
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.02 E-value=0.00072 Score=62.60 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=36.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|.|+|+.++|||+|+|+|++.. |.. .. +.|.|.-... .+ ..++..+.+.|+||+|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCS--CC-CTTCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc--cCC--CC-CCCcceEEEE-EE---EECCEEEEEEEEECCCcc
Confidence 348899999999999999999765 421 11 1233322211 11 123455789999999954
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.01 E-value=0.00063 Score=63.50 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=39.0
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|.|+|+.++|||+|+|+|++.. |.... ..|.|.-.....+ ..++..+.+.++||+|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK--FNDKH---ITTLGASFLTKKL---NIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC--CCSSC---CCCCSCEEEEEEE---ESSSCEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC--CCcCC---CCccceEEEEEEE---EECCEEEEEEEEECCCcH
Confidence 3458999999999999999999765 32211 1233322211111 124556789999999964
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.01 E-value=0.00078 Score=64.04 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|+.++|||+|+|+|++.. |.- ...+.| +...... + ..++..+.+.|+||+|..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~--~~~--~~~~t~-~~~~~~~-~---~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH--FVD--EYDPTI-EDSYRKQ-V---VIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS--CCC--CCCTTC-CEEEEEE-E---EETTEEEEEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--CCCCCc-hheEEEE-E---EECCcEEEEEEEECCCcH
Confidence 48899999999999999999765 321 111222 2211111 1 123555778899999964
No 45
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.00 E-value=0.00044 Score=64.36 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=37.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.++||+|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI--FTKDY---KKTIGVDFLERQIQ---VNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCCCS---SCCCSSSEEEEEEE---ETTEEEEEEEECCTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCceEEEEEEEEEE---ECCEEEEEEEEcCCCcH
Confidence 347899999999999999999765 43211 22333211111111 13445789999999964
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.00 E-value=0.00085 Score=62.05 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=37.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|+|+|+.++|||+|+|+|++.. |.- ...+ |.|..... .+ ..++..+.+.|+||+|..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~--~~~--~~~~-~~~~~~~~-~~---~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT--FIE--KYDP-TIEDFYRK-EI---EVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--Ccc--cCCC-CcceeEEE-EE---EECCEEEEEEEEECCCch
Confidence 48999999999999999999765 321 1122 33322211 11 123455778999999953
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.99 E-value=0.00096 Score=64.69 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=42.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.+..-|+|+|..++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ---YKATIGADFLTKEVM---VDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---SSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence 456679999999999999999999875 4321 123444433322221 234567899999999643
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.00084 Score=63.20 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=40.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..=|+|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.++||+|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT--FSGSY---ITTIGVDFKIRTVE---INGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CC---TTTBSEEEEEEEEE---ETTEEEEEEEEEETTGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--CCCcc---CCCceeEEEEEEEE---ECCEEEEEEEEcCCCch
Confidence 455668999999999999999999876 43211 22333322222221 13455789999999964
No 49
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.99 E-value=0.014 Score=71.64 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 005055 546 KRYDDAINDKKKLAD---DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (716)
Q Consensus 546 k~lee~i~dlk~~~e---~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~ 604 (716)
..++..+..|++..+ ....++..++.++.++++++..+.++++.+.+|+.+++.+++++
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555533332 33444455555556666666666666666665555555554444
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.98 E-value=0.00085 Score=63.16 Aligned_cols=61 Identities=23% Similarity=0.173 Sum_probs=39.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|+|+|..++|||+|+|+|++.. |.- .. +.|.|.-... .+ ..++..+.+.|+||.|..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVS--DY-DPTIEDSYTK-IC---SVDGIPARLDILDTAGQE 68 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCS--SC-CTTCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--Ccc--cc-CCCcCceEEE-EE---EECCEEEEEEEEECCCch
Confidence 34568999999999999999999874 321 11 2233332221 11 123455788999999964
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.98 E-value=0.00054 Score=64.40 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=39.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeEEEEEEEE---ECCeEEEEEEEECCCcH
Confidence 458899999999999999999765 4321 123444433222221 13455789999999964
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.97 E-value=0.00069 Score=64.83 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.=|+|+|+.++|||+|+|+|++..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 348899999999999999999875
No 53
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.95 E-value=0.00065 Score=65.22 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=35.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|+|+|+.++|||+|+|+|.|....|. + ....|.|+-.....+.....++..+.+.++||.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~-~--~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL-G--MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC-C--CcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 378999999999999999998633342 1 123466665433322211113445788999999964
No 54
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00098 Score=61.43 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|+.++|||+|+|+|++.. |.- ...+ |.|... ...+ ..++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~--~~~--~~~~-~~~~~~-~~~~---~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH--FVD--ECDP-TIEDSY-RKQV---VIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEE-EEEE---EETTEEEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--Ccc--ccCC-ccceEE-EEEE---EECCEEEEEEEEECCCch
Confidence 37899999999999999999764 321 1112 222211 1111 113455788999999964
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=96.94 E-value=0.0057 Score=67.31 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHhhHHhHHHHHHHHH-HHHHHHHHH---HHHHHH
Q 005055 539 RYKSEYLKRYDDAINDKKKLADDYTSRI----NNLQGENISLREKSSSLSKTVDSLKNEIS-DWKRKYDQV---LTKQKA 610 (716)
Q Consensus 539 ~~~~~~~k~lee~i~dlk~~~e~~~~~~----~~l~~k~~~le~~~~~~~~~le~~k~e~~-e~~r~y~~~---i~~~k~ 610 (716)
.++-.+++++...|++|+.+++++..-. +.++..+..|..+..... +.++...|++ |++|+|+.+ |+++.+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888888888888883333 556777777777777666 7888888877 888888877 777766
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q 005055 611 MEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 611 ~~~~~~~~i~~l~~r~~~~eerl 633 (716)
....|++.|+++..+++.||--+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766666666433
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.94 E-value=0.00083 Score=62.43 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=38.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|+|+|+.++|||+|+|+|++.. |.- ....|.|+-.....+. .++..+.+.++||+|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ--FHE---FQESTIGAAFLTQTVC---LDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCT---TCCCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 458999999999999999999764 321 1123444332222221 13445789999999964
No 57
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.91 E-value=0.001 Score=62.58 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=37.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
+...|+|+|+.++|||+|+|+|++.. |..... ...|..+-.+...+ ++ ..+.++||+|....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~-----~~--~~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEA-GGITQHIGAYQVTV-----ND--KKITFLDTPGHEAF 68 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSC-CSSSTTCCCCEEEE-----TT--EEEEESCCCSSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc--cccCCC-CceeEeeeEEEEEe-----CC--ceEEEEECCCCHHH
Confidence 44468899999999999999999865 443221 11111111111111 22 45778999997543
No 58
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.91 E-value=0.00047 Score=72.21 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=23.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
++..|+|+|.+++|||+|+|.|+|..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999999975
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=63.12 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=40.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|.|+|+.++|||+|+|+|++.. |.. .. +.|.|.-.. ..+ ..++..+.+.|+||+|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYR-KKV---VLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCT--TC-CTTCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC--CCC--CC-CCccceEEE-EEE---EECCEEEEEEEEcCCChh
Confidence 456678999999999999999999765 421 11 223332221 111 113455789999999964
No 60
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.91 E-value=0.00098 Score=63.47 Aligned_cols=59 Identities=29% Similarity=0.461 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|+|+|+.++|||+|+|+|.|.. |..-+...+.|.+...-. + ..+| ..+.++||.|+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~--~~~~~~~~~~t~~~~~~~--~---~~~~--~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE--AAIVTDIAGTTRDVLREH--I---HIDG--MPLHIIDTAGLR 63 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC--CSCCCSSTTCCCSCEEEE--E---EETT--EEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--cceeeCCCCceeceeeEE--E---EECC--eEEEEEECCCcc
Confidence 358899999999999999999875 321111112232221111 0 0123 457899999974
No 61
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.90 E-value=0.0009 Score=64.36 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE--FSHD---SRTTIGVEFSTRTVM---LGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC--CCSS---CCCCSSEEEEEEEEE---ETTEEEEEEEEEESCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 358999999999999999999865 4321 123444332222211 12445789999999974
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.90 E-value=0.0007 Score=63.65 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=39.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|.|+|..++|||+|+|+|++.. |.. ..+.|.|+-.....+. .++..+.+.|+||+|..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCTTSCCCCEEEEEEE---ETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCCh
Confidence 34568999999999999999999765 321 1122333221111111 13445789999999953
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.89 E-value=0.0011 Score=61.47 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=38.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|+|+|..++|||+|+|+|++.. |.-. ...|.|.-.. ..+ ..++..+.+.|+||+|..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI--FVEK---YDPTIEDSYR-KQV---EVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC--CCCS---CCCCSEEEEE-EEE---ESSSCEEEEEEEEECSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCCccceEE-EEE---EECCEEEEEEEEECCChH
Confidence 48899999999999999999754 4211 1224443322 111 124556789999999964
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.89 E-value=0.00069 Score=63.12 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=36.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccce----EEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG----LWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkG----IWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|+|+|+.++|||+|+|+|++.. |.... ..|.| ++.+. .++..+.+.|+||+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTVD-------INGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC--CCC----------CCEEEEEEE-------SSSCEEEEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEEE-------ECCEEEEEEEEeCCCCh
Confidence 358999999999999999999765 42211 11222 22221 13556789999999964
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.87 E-value=0.0011 Score=64.20 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=40.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTIY---RNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC--CCSCC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence 34568999999999999999999876 43211 22334332222221 13455789999999974
No 66
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=96.86 E-value=0.0061 Score=50.99 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 005055 547 RYDDAINDKKKLADDYTSRI-----NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~-----~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~ 604 (716)
++...|.+++.+||.++.++ +||+.|+.++........+.|.+++.|++|++|.++.+
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999888 78999999999999999999999999999999998775
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.85 E-value=0.00082 Score=62.74 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=34.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.=|.|+|+.++|||+|+|+|.+.. |...+.. +.|...... .+. .++..+.+.++||.|.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~--~~~~~~~-~~~~~~~~~--~~~---~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ--GDHAHEM-ENSEDTYER--RIM---VDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC---------------CEEEE--EEE---ETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc--CcccccC-CCcCCeeeE--EEE---ECCeEEEEEEEECCCccc
Confidence 348899999999999999999765 2211110 111111111 111 135567899999999753
No 68
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.0011 Score=63.78 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=36.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCcccc--ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~--g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|+|+|..++|||+|+|+|++.. |.. .++....+.-.+ ..++..+.+.|+||+|..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~---------~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT--FRDTYIPTIEDTYRQVI---------SCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC--CCCTTSCCCCEEEEEEE---------EETTEEEEEEEEECCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC--CCCcccCccccceeEEE---------EECCEEEEEEEEeCCChH
Confidence 458999999999999999999765 321 122211111111 113445789999999964
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.001 Score=65.37 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=39.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccc--ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~--g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..=|+|+|..++|||+|+|+|++.. |.. .++....+..+... ..++..+.+.|+||.|...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGR--FEKNYNATVGAVNHPVTFL-------DDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCS--TTCEEETTTTEEEEEEEEE-------BTTSCEEEEEEEEECSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCccceeeEEEEEE-------eCCCcEEEEEEEecCCchh
Confidence 34458899999999999999999765 321 22222222222221 1234447899999999643
No 70
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.0029 Score=67.98 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=43.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.+..+|+|+|+.++|||+|+|.|.|.. +.+++. ...|+++-+...+. + ...+.++||+|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~-~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASY-PFTTRGINVGQFED-----G--YFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECC-TTCSSCEEEEEEEE-----T--TEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCC-CCeeeceeEEEEEe-----c--CceEEEEeCCCccc
Confidence 455689999999999999999999876 444432 23455554332221 1 25789999999853
No 71
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.82 E-value=0.0004 Score=74.75 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
+.+..+|+|+|++++|||||+|.|+|
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999999999986
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.81 E-value=0.00088 Score=65.30 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=39.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|+|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTVD---INGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC--CCCSS---SCCCSCCEEEEEEE---ETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCccc---CCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence 34568999999999999999999765 43211 11222211111111 134457899999999643
No 73
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.81 E-value=0.00084 Score=73.62 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=35.8
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeecccccccc------C------CC-CceeEEEEeCCC
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTA------L------DG-TEYNLLLLDSEG 137 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~------~------~g-~~~~vvlLDTEG 137 (716)
|+|+|.+++|||+|+|+|.|.. +.+++ ++...+.|+..+..+.+... | ++ ..+.+.|+||+|
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 7899999999999999999876 33333 23334678866542222100 0 11 136799999999
Q ss_pred Cc
Q 005055 138 ID 139 (716)
Q Consensus 138 l~ 139 (716)
+.
T Consensus 81 ~~ 82 (397)
T 1wxq_A 81 LV 82 (397)
T ss_dssp --
T ss_pred cc
Confidence 84
No 74
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.81 E-value=0.001 Score=63.20 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=40.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK--FKDDS---NHTIGVEFGSKIIN---VGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCSEEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 34568999999999999999999765 43221 12334322221111 13445789999999964
No 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.80 E-value=0.0012 Score=63.69 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=40.0
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-.=|+|+|+.++|||+|+|+|++.. |... ...|.|+-.....+.. ++..+.+.|+||+|..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH--FDHN---ISPTIGASFMTKTVPC---GNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC--CCTT---CCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC--CCCC---cCCCcceeEEEEEEEe---CCEEEEEEEEcCCCch
Confidence 4458999999999999999999875 4211 1224443332222211 2455789999999964
No 76
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.80 E-value=0.0014 Score=62.08 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=39.7
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..-|+|+|..++|||+|+|+|++.. |.- .. +.|.|.-.... + ..++..+.+.|+||.|....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~~-~---~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVD--SY-DPTIENTFTKL-I---TVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCS--CC-CTTCCEEEEEE-E---EETTEEEEEEEEECCCCCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCC--CC-CCCccccEEEE-E---EECCEEEEEEEEeCCCchhh
Confidence 4468899999999999999999654 321 11 12333322111 1 12455678899999997543
No 77
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.80 E-value=0.0019 Score=67.48 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..|+|+|.+++|||+|+|.|+|.. .+.+++.. .+|+..- |.. + + ..+.|+||+|+...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~-g~T~~~~-~~~-~------~--~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN-IAKTGDRP-GITTSQQ-WVK-V------G--KELELLDTPGILWP 178 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC-CC-------------C-CEE-E------T--TTEEEEECCCCCCS
T ss_pred ceEEEEecCCCchHHHHHHHhcCc-eeecCCCC-CeeeeeE-EEE-e------C--CCEEEEECcCcCCC
Confidence 358899999999999999999875 24444331 2454431 211 1 1 14789999999644
No 78
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.00096 Score=72.60 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=40.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
-++-|+|+|.+.+|||||+|.|.|.. -.+++ ++.-+..|+.-|. | ..+.|+||+|+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~---------~--~~i~l~D~pGl 129 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYK---------G--AKIQMLDLPGI 129 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEET---------T--EEEEEEECGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeC---------C--cEEEEEeCCCc
Confidence 35679999999999999999999865 22222 2223356776542 2 56899999998
No 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.79 E-value=0.14 Score=68.61 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 690 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~ 690 (716)
++.+++.++.++..++++|+++++++...++..+.-+.+|+.++ ..|..|+.++..-++-++-++.==.+|..|-
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~-~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI-RETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44566667777778888888888888888888899999999999 6788888877766666666655555555443
No 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.77 E-value=0.021 Score=70.10 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=35.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 582 SLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 649 (716)
Q Consensus 582 ~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~ 649 (716)
.+...+.+++.++.+.+..|+.+..+.+..++..+....+|+.+++.++...+.|+.|++...+.+.+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544444444444455555555555555555555555544443
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.77 E-value=0.0013 Score=61.95 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. ..++..+.+.|+||+|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK--YSQQY---KATIGADFLTKEVT--VDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC--CCTTC------CCCSCEEEEEC--CSSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc--CCccc---CCccceEEEEEEEE--EcCCcEEEEEEEECCCCh
Confidence 355678999999999999999999865 33211 12333222111111 112445789999999954
No 82
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.77 E-value=0.0013 Score=63.00 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=38.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTVY---RHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCCSC---CCCCCCEEEEEEEE---ETTEEEEEEEEECCSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCc---CCceeEEEEEEEEE---ECCeEEEEEEEeCCCcHH
Confidence 348999999999999999999875 43211 12333322211111 134457899999999643
No 83
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.0013 Score=62.90 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=40.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-.-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT--FDPE---LAATIGVDFKVKTIS---VDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCcc---CCCccceEEEEEEEE---ECCeEEEEEEEeCCCch
Confidence 3468999999999999999999865 4321 122444333222221 13445789999999964
No 84
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.76 E-value=0.0017 Score=61.40 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=38.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..=|.|+|+.++|||+|+|+|++.. |.. .. +.|.|.-.. ..+ ..++..+.+.|+||+|..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYR-KKV---VLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCC--SC-CTTCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CCC--cC-CCccceEEE-EEE---EECCEEEEEEEEECCCCc
Confidence 3458899999999999999999765 422 11 123332221 111 113455789999999954
No 85
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.76 E-value=0.0066 Score=57.79 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=44.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccc-----cCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g-----~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|..++|||+|+|.|.|....-..+ .+....|.|+-.....+. ..++..+.+.++||.|..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG--EVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC--CSSSCEEEEEEEECCSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc--cccCCceEEEEEeCCChH
Confidence 44568999999999999999888753211100 011234777766654331 124567889999999964
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.75 E-value=0.0015 Score=62.51 Aligned_cols=58 Identities=28% Similarity=0.314 Sum_probs=36.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|..++|||+|+|+|++.. |.- ...+ |.|.-... .+ ..++..+.+.|+||.|..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH--FVD--EYDP-TIEDSYRK-QV---VIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--Ccc--ccCC-ccceEEEE-EE---EECCEEEEEEEEECCChH
Confidence 47899999999999999999764 321 1112 22322211 11 123455789999999964
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.75 E-value=0.0019 Score=60.75 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccC----CCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..|+|+|+.++|||+|+|+|.|.. |.+++. +.. ..|...| ++ ..+.++||.|....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~-~~~~~~~---------~~--~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEK-KEGEFEY---------NG--EKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCC-CEEEEEE---------TT--EEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceee-eEEEEEE---------CC--cEEEEEECCCcccC
Confidence 468999999999999999999865 444321 111 1222211 12 56889999997543
No 88
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.74 E-value=0.0011 Score=64.63 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=39.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
..-|.|+|+.++|||+|+|+|++.. |.... ..|.|+=.....+. .++..+.+.|+||+|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT--YTNDY---ISTIGVDFKIKTVE---LDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCTTC---CCSSCCCEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEeCCChHH
Confidence 4468999999999999999999865 43221 12223211111111 134557899999999653
No 89
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.05 Score=48.55 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=64.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 579 KSSSLSKTVDSLKNEISDWKRKYDQVLTK-------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (716)
Q Consensus 579 ~~~~~~~~le~~k~e~~e~~r~y~~~i~~-------~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~ 651 (716)
+..-|......++.|..+|+.+|+..-.+ .++.-..+...-..++.++..+|-.--+++++.-.+-.-.++--
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 34445555555666666666666666333 22333333333344444566777777777777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005055 652 RKYGVAVREAKAALEKAAIVQERTSK 677 (716)
Q Consensus 652 ~kY~~~~~~~Ka~leq~~~~~~~~~e 677 (716)
.||..++ +-.|.||-++.--+.|.+
T Consensus 84 ~k~n~ai-ErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 84 QRLNQAI-ERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999886666544
No 90
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.73 E-value=0.0008 Score=72.29 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+..-|+|+|.+++|||+|+|.|+|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999975
No 91
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.73 E-value=0.0014 Score=62.46 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=35.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
=|.|+|+.++|||+|+|+|++.. |..+... ..|..+..+.. + .+.++||+|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~-~~t~~~~~~~~--------~---~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRP-GVTRKIIEIEW--------K---NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC--CSSSSST-TCTTSCEEEEE--------T---TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CccCCCC-CccceeEEEec--------C---CEEEEECCCccc
Confidence 37899999999999999999876 6554331 12222221110 0 377899999753
No 92
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.71 E-value=0.0011 Score=62.52 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=38.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ--FVEFQ---ESTIGAAFFSQTLA---VNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC--CTTTS---CCCSCCSEEEEEEE---ETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC--CCCcC---CCCceeEEEEEEEE---ECCEEEEEEEEeCCCCh
Confidence 34468999999999999999999765 32211 12333211111111 12345789999999954
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.71 E-value=0.0012 Score=63.84 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=35.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT--FCEAC---KSTVGVDFKIKTVE---LRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-------------CCTTEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCcCC---CCccceeEEEEEEE---ECCeEEEEEEEeCCCcH
Confidence 47899999999999999999875 43211 22334332222221 13455789999999953
No 94
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.68 E-value=0.0022 Score=60.99 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=38.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEee-cccccc------ccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW-SAPLKR------TALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw-~~p~~~------~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|+.++|||+|+|+|++.. |... ...|.|+-.. ...+.. ....+..+.+.|+||+|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK--FNSK---FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC--CCcC---cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 34458899999999999999999765 3221 1223333221 000000 0011225789999999963
No 95
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.68 E-value=0.0019 Score=62.78 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=39.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|+|+|..++|||+|+|+|++.. |... . ..|.|.-.... + ..++..+.+.|+||.|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE--FSEG--Y-DPTVENTYSKI-V---TLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC--CCSC--C-CCCSEEEEEEE-E---C----CEEEEEEEECCCCT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC--CCCC--C-CCccceEEEEE-E---EECCEEEEEEEEECCCccc
Confidence 34468999999999999999999876 4321 1 23444333211 1 1234567889999999653
No 96
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.68 E-value=0.0014 Score=62.84 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=40.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.++.-|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC--CCSCC---CCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCcccceEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 345669999999999999999999765 43221 12333222211111 13455789999999954
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.67 E-value=0.0016 Score=63.05 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=40.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
....|+|+|+.++|||+|+|.|.|.. |.... ..|.|+-.....+. .+|..+.+.+.||.|..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC--CCCSC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEECCCCc
Confidence 35679999999999999999999876 43221 22333322222111 13555677789999964
No 98
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.66 E-value=0.0017 Score=62.31 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR--FPDRT---EATIGVDFRERAVD---IDGERIKIQLWDTAGQE 80 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCSSC---CCCCSCCEEEEEEE---ETTEEEEEEEEECCCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 458999999999999999999765 42211 22333322221111 13445789999999964
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.64 E-value=0.0016 Score=63.22 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=39.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
....|+|+|+.++|||+|+|.|.|.. |.... ..|.|+-.....+. .+|..+.+.+.||.|..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC--CCC------CCCSCEEEEEEEE---ETTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCch
Confidence 35679999999999999999999875 43211 12323221111111 13555778899999964
No 100
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.64 E-value=0.0023 Score=59.68 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=37.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|.|+|+.++|||+|+|+|++.. |. .. ..|.|+-.....+ + .+.+.++||+|...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE--VV---TT-IPTIGFNVETVTY-----K--NLKFQVWDLGGLTS 63 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CC---CC-CCCSSEEEEEEEE-----T--TEEEEEEEECCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC---Cc-CCcCccceEEEEE-----C--CEEEEEEECCCChh
Confidence 458899999999999999998765 42 11 2244543322211 1 36789999999753
No 101
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.63 E-value=0.004 Score=71.10 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
....|+|+|.+++|||+|+|+|+|..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999986
No 102
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0014 Score=64.37 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||.|..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTVE---INGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 3458899999999999999999765 53322 23444332222221 24556789999999953
No 103
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.61 E-value=0.0038 Score=59.17 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+.+..-|.|+|+.++|||+|+|+|++.. |... . ..|.|.-.... + ..++..+.+-++||.|..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKI--FVDD--Y-DPTIEDSYLKH-T---EIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCSC--C-CTTCCEEEEEE-E---EETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCC--CCCC--C-CCCccceeEEE-E---EeCCcEEEEEEEECCCch
Confidence 3456678999999999999999999764 3221 1 12333222111 1 123455667789999964
No 104
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.60 E-value=0.51 Score=44.63 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=93.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK---NEISDWKRKYDQVLTKQKAMEDQVCSE 618 (716)
Q Consensus 542 ~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k---~e~~e~~r~y~~~i~~~k~~~~~~~~~ 618 (716)
..-.+.|++.-. +....+....+....+.++..|++.+......|.+++ ...++-.-.|++.|.. +...
T Consensus 14 e~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~-------L~~k 85 (155)
T 2efr_A 14 SKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKV-------LSDK 85 (155)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHH-------HHHH
Confidence 334456666555 7778888888888889999999988777666655544 4445555556665554 6667
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Q 005055 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (716)
Q Consensus 619 i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~ 692 (716)
+.+.+.|...+|-.+..++..++.+..++..|+.+|..+-. .|++...- +..++.+=..|.+|+..
T Consensus 86 LKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~----eLd~tl~e----l~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 86 LKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE----EMKQLEDK----VEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHhcccchHHHHHHHHH
Confidence 77777788888888889999999999999999999987763 34432221 22235566666666543
No 105
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.59 E-value=0.54 Score=44.86 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA 629 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~ 629 (716)
+....+++.--++....+.++..+++|.+++..+....++++++...+. ..+...+.....-...|++|++|+..+
T Consensus 27 E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ----a~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 27 DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ----AILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555666666666666666666666666666655443 233334444444555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005055 630 EARLAAAREQALSAQEEVE 648 (716)
Q Consensus 630 eerl~~~~~ql~~ak~E~~ 648 (716)
++.+..+...+..+..|.-
T Consensus 103 ~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 103 QEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6555555555555544444
No 106
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.59 E-value=0.0036 Score=59.54 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=38.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
-..|+|+|+.++|||+|+|+|.|.. |.++... ..|...-.....+ + .+.+.++||+|....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~-~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWP-GVTVEKKEGEFEY-----N--GEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEEEEE-----T--TEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCC-CeeccceEEEEEe-----C--CcEEEEEECCCcCcc
Confidence 3579999999999999999999865 4443321 1121111111000 1 267889999997543
No 107
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.59 E-value=0.0013 Score=68.08 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+..-|+|+|.+++|||+|+|.|+|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 44579999999999999999999976
No 108
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.57 E-value=0.0015 Score=60.56 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=36.4
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|+|+|+.++|||+|+|+|++.. |. ...| |.|+-.... +...+.+.++||+|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~--~~---~~~~-t~~~~~~~~-------~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE--IV---TTIP-TIGFNVETV-------EYKNISFTVWDVGGQD 55 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC--SS---CCCC-CSSCCEEEE-------ECSSCEEEEEECCCCG
T ss_pred EEEECCCCCCHHHHHHHHHcCC--cC---cccC-cCceeEEEE-------EECCEEEEEEEcCCCh
Confidence 7899999999999999998765 42 1122 555322211 1223679999999974
No 109
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.57 E-value=0.0029 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 60 Al~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
+++-+...-.+-.+|+|+|+.++|||||+|.|+|
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3333333235667899999999999999999985
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.55 E-value=0.0029 Score=59.83 Aligned_cols=59 Identities=29% Similarity=0.284 Sum_probs=37.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
=|+|+|..++|||+|+|+|.+.. |.- ...+ |.|... ...+ ..++..+.+.++||+|...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~-~~~~---~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIP-TVFDNY-SANV---MVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--CCS--SCCC-CSCCEE-EEEE---EETTEEEEEEEECCCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC--CcCC-ccccee-EEEE---EECCEEEEEEEEECCCCHh
Confidence 48999999999999999999654 321 1112 222211 1111 1245567888999999753
No 111
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.55 E-value=0.0022 Score=59.65 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=32.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
=|+|+|+.++|||+|+|+|.|.. +...+ .|.|.-... .+ ..++..+.+.+.||.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~--~~~~~----~~~~~~~~~-~~---~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE--DGPEA----EAAGHTYDR-SI---VVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC----------------CEEEE-EE---EETTEEEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHcCcc--ccCCC----CccccceEE-EE---EECCEEEEEEEEECCCCcc
Confidence 48899999999999999999765 22111 122221111 01 1235567899999999653
No 112
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.55 E-value=0.0031 Score=60.94 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=36.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|.|+|..++|||+|+|+|++.. |.- ...+ |.|.-.. ..+ ..++..+.+.|+||.|...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPT--EYIP-TAFDNFS-AVV---SVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC------------C-CSSEEEE-EEE---EETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCC--CCCC-cccceeE-EEE---EECCEEEEEEEEECCCCHH
Confidence 34458899999999999999999875 532 1122 2232221 111 1235557788999999753
No 113
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.0017 Score=62.93 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=36.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|.|+|+.++|||+|+|+|++.. |.-. ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE--FREN---ISATLGVDFQMKTLI---VDGERTVLQLWDTAGQE 88 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC--CC-------------CEEEEEE---ETTEEEEEEEEECTTCT
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC--CCcc---CCCCccceeEEEEEE---ECCEEEEEEEEECCCCc
Confidence 3458999999999999999999765 4211 112334322221111 13455789999999954
No 114
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.54 E-value=0.00097 Score=64.51 Aligned_cols=62 Identities=32% Similarity=0.460 Sum_probs=18.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCC--ceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGT--EYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~--~~~vvlLDTEGl~ 139 (716)
.-|.|+|+.++|||+|+|+|++....|.- ....|.|+-.....+. .++. .+.+.|+||.|..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~---~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLK---DYAMTSGVEVVVAPVT---IPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEC-------------------------------------CEEEE---CTTSSEEEEEEEEETTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccC---CCCCccceEEEEEEEE---ECCcccEEEEEEEECCCcH
Confidence 46899999999999999999987322431 1234555322222221 1333 5789999999974
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.53 E-value=0.0015 Score=63.70 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=34.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK--FKQDS---NHTIGVEFGSRVVN---VGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-----------------CCEEEEEEE---ETTEEEEEEEECCTTHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC--CCccC---CCcccceeEEEEEE---ECCeeeEEEEEcCCCcH
Confidence 358899999999999999999865 43221 12333211111111 13445789999999964
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.52 E-value=0.64 Score=45.30 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQAL 641 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~ 641 (716)
..+.+.++++++..+=||.+=|+..++
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666565556555555544
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0053 Score=59.16 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=39.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-.=|.|+|..++|||+|+|+|++.. |... ...|.|.-.. ..+ ..++..+.+.|+||.|..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~ 87 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR--FIWE---YDPTLESTYR-HQA---TIDDEVVSMEILDTAGQE 87 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC--CCSC---CCTTCCEEEE-EEE---EETTEEEEEEEEECCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCcc---cCCCCCceEE-EEE---EECCEEEEEEEEECCCCC
Confidence 3458899999999999999999865 4221 1223333221 111 123556789999999975
No 118
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.50 E-value=0.0025 Score=61.14 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-.-|.|+|..++|||+|+|+|++.. |.... ...|.|+-.... ++..+.+.|+||.|...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~--~~~t~~~~~~~~-------~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ--SSSKH--ITATVGYNVETF-------EKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC------C--CCCCSSEEEEEE-------EETTEEEEEEEECCSGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--Ccccc--cccccceeEEEE-------EeCCEEEEEEECCCCHh
Confidence 3457899999999999999999876 54311 123555444322 13347899999999753
No 119
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.50 E-value=0.0024 Score=61.24 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=38.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|+|+|..++|||+|+|+|++.. .|... -..|.|+-.....+ + .+.+.|+||.|...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~-~~~~~---~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN-AQSQN---ILPTIGFSIEKFKS-----S--SLSFTVFDMSGQGR 79 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG-GCCSS---CCCCSSEEEEEEEC-----S--SCEEEEEEECCSTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCC---cCCccceeEEEEEE-----C--CEEEEEEECCCCHH
Confidence 47899999999999999999864 12211 12455654433222 2 26789999999653
No 120
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.48 E-value=0.0041 Score=68.73 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=35.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~ 142 (716)
+..-|+|+|..++|||+|+|+|++.. |...+.....|...... ++.. .+ ...+.|+||+|.++..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~--~~~~~~~~gtT~d~~~~--~~~~---~~-~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQN--VSIVSDYAGTTTDPVYK--SMEL---HP-IGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEE--EEEE---TT-TEEEEEEECSSTTCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCC--CCccCCCCCeeeeeEEE--EEEE---CC-CCeEEEEECcCCCccc
Confidence 34458999999999999999999876 43222222222221111 1110 11 1368999999997554
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.48 E-value=0.0069 Score=58.87 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+-..|+|+|+.++|||+|+|.|+|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33579999999999999999999875
No 122
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.47 E-value=0.0033 Score=59.85 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=38.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|.|+|+.++|||+|+|+|++.. +. .. ..|.|+-.....+ + .+.+.++||+|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VD---TI-SPTLGFNIKTLEH-----R--GFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CS---SC-CCCSSEEEEEEEE-----T--TEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CC---cc-cccCccceEEEEE-----C--CEEEEEEECCCCH
Confidence 44568999999999999999999865 21 11 2244533222211 1 3678999999974
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.45 E-value=0.0025 Score=61.31 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=40.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|..++|||+|+|+|.+.. |.. ....|.|.-.... + ..++..+.+.++||.|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~---~~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE--IPT---AYVPTVFENFSHV-M---KYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEEE-E---EETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC--CCC---ccCCeeeeeeEEE-E---EECCEEEEEEEEECCCcH
Confidence 34458899999999999999999876 421 1123444443321 1 124556788999999964
No 124
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.44 E-value=0.0015 Score=77.01 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=26.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST 103 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~ 103 (716)
++--|+|+|.+.+|||+|+|.|+|.. -++.|.+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g 82 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSG 82 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCc
Confidence 34478999999999999999999975 1255544
No 125
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.44 E-value=0.0031 Score=60.62 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=37.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||+|+|+|++.. |.- ...+ |.|.-... .+ ..++..+.+.|+||.|..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR--FIS--EYDP-NLEDTYSS-EE---TVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCc--ccCC-CccceeeE-EE---EECCEEEEEEEEECCCCC
Confidence 48899999999999999999765 431 2223 33332211 11 124556788999999964
No 126
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.43 E-value=0.0025 Score=70.54 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=37.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcc--ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF--~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|+|+|+.++|||+|+|.|+|....+ ...+++...+.|.|.|. | ..+.++||.|+.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~---------g--~~~~l~Dt~G~~ 239 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID---------G--RKYVFVDTAGLR 239 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET---------T--EEEEESSCSCC-
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC---------C--EEEEEEECCCCc
Confidence 3469999999999999999999975211 11112223345666653 3 357889999973
No 127
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.42 E-value=0.0038 Score=60.66 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|+|+|..++|||+|+|+|.|....|.-.++ .|.-.....+ ..++..+.+.+.||.|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE-----NPEDTYERRI---MVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT-----SCTTEEEEEE---EETTEEEEEEEECCCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC-----cccceEEEEE---EECCEEEEEEEEecCCCc
Confidence 45667999999999999999999876533432222 1111111111 124556788999999964
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.42 E-value=0.0097 Score=57.47 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccC--CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVAST--HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~--~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|.|+|..++|||+|+|+|.|.. ...++ +.. |.+...+. ..++..+.+.++||.|...
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~---~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKM---SPNETLFLES-TNKIYKDD------ISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCC---CGGGGGGCCC-CCSCEEEE------ECCTTSCCEEEEECCSSCC
T ss_pred EEEECCCCCCHHHHHHHHHhcC---CCcceeeecc-ccceeeee------ccCCCeeEEEEEECCCCHH
Confidence 7889999999999999999853 22221 112 22222211 1124557899999999643
No 129
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0041 Score=59.44 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+-.-|.|+|..++|||+|+|+|.+.... ...+ |.|+-.+...+ + .+.+.++||.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-----t~~~~~~~~~~-----~--~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP-----TIGSNVEEIVI-----N--NTRFLMWDIGGQE 71 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC-----CSCSSCEEEEE-----T--TEEEEEEECCC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC-----CCccceEEEEE-----C--CEEEEEEECCCCH
Confidence 44456899999999999999999976521 2223 33322111111 1 2789999999974
No 130
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.40 E-value=0.0024 Score=69.00 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc-----CCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS-----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~-----~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|+|+|+.++|||+|+|.|+|.. -|..+. .....|.|+-.....+. .+|..+.+.++||.|+++
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~---~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIE---ERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC-------CEEEEEEEEC------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEee---cCCcccceEEEEeccccc
Confidence 36999999999999999999863 232221 01123555544332221 134446789999999864
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.40 E-value=0.0037 Score=60.71 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+|+|..++|||+|+|+|.+.. |... . ..|.|.-.... + ..++..+.+.|+||.|...
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ--FPEV--Y-VPTVFENYIAD-I---EVDGKQVELALWDTAGQED 85 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--CCSS--C-CCSSCCCCEEE-E---EETTEEEEEEEECCCCSGG
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCcc--c-CCcccceEEEE-E---EECCEEEEEEEEECCCchh
Confidence 7899999999999999999765 3211 1 11222211110 1 1134557899999999643
No 132
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.0034 Score=60.33 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=39.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.=|+|+|+.++|||+|+|+|++.. |.... ..|.|.+.. .+ ..+|..+.+.++||.|..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~--~~~~~---~~t~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT--YVQEE---SPEGGRFKK--EI---VVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS--CCCCC---CTTCEEEEE--EE---EETTEEEEEEEEECSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCCcceEEE--EE---EECCEEEEEEEEECCCCh
Confidence 348899999999999999999765 54221 224454331 11 124566788899999964
No 133
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.40 E-value=0.0012 Score=62.27 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=39.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+-.=|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+.. +++..+.+.|+||.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET--FGKQ---YKQTIGLDFFLRRITL--PGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG--TTHH---HHHTTTSSEEEEEEEE--TTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc--CCCC---CCCceeEEEEEEEEEe--CCCCEEEEEEEECCCCc
Confidence 34458899999999999999999765 4311 1123342222111111 12345789999999954
No 134
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.40 E-value=0.013 Score=66.97 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005055 630 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKVLSY 701 (716)
Q Consensus 630 eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~~~~~~ 701 (716)
+++.+.+++.++..+++..+-+.+|+.+- +.+.++|+.+...++.+++.+..-..++++++..+..-+.-+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLE-QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHH-hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444444444444555555555554 455555555555555555555555555666655555444333
No 135
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.39 E-value=0.0021 Score=61.80 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccC-CCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~-~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|+.++|||+|+|+|++.. |..... ....+..++.+. .++..+.+.|+||.|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-------~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVN-------IDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC--CCC-----CCSSEEEEEEE-------ETTEEEEEEEECCTTGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEE-------ECCEEEEEEEEECCCch
Confidence 48899999999999999999765 432111 001112222221 13455789999999964
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.38 E-value=0.0038 Score=69.42 Aligned_cols=54 Identities=37% Similarity=0.599 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccc-cccCCCccc----ceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~-~g~~~~~~T----kGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+|+|+|..++|||+|+|+|+|.. |. +..+ -..| .+..-| ....+.|+||.|++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~--~~~v~~~-~g~t~~~~~~~~~~-----------~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDT-PGVTRDRIYSSAEW-----------LNYDFNLIDTGGID 82 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE--EC------------CEEEECTT-----------CSSCCEEECCCC--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC--CcccCCC-CCcceeEEEEEEEE-----------CCceEEEEECCCCC
Confidence 479999999999999999999875 32 2211 1122 222222 12467899999986
No 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.38 E-value=0.31 Score=44.75 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS 626 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~ 626 (716)
..++.+..++..++........|+.++..+......+..+|.+-.....+..-++..++.. +..+...|.++..|+
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~----k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKN----KIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4566677777777777777777777788888888888888877766666666666665443 567888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 627 TAAEARLAAAREQALSAQEEVEEWKRKYG 655 (716)
Q Consensus 627 ~~~eerl~~~~~ql~~ak~E~~~w~~kY~ 655 (716)
...+++.+.+......+..++.+++..-+
T Consensus 93 eeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777777776555443
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.37 E-value=0.0028 Score=68.56 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=35.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccc----ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~----g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
++.+|+|+|+.++|||+|+|.|.|.. +.+ +.|..+.+.-|.+ +| ..+.++||.|+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~----------~g--~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPI----------NN--RKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE----------TT--EEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEE----------CC--EEEEEEeCCCc
Confidence 56679999999999999999999875 332 2333332222222 23 45788999996
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.37 E-value=0.0034 Score=59.94 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=39.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|.|+|+.++|||+|+|+|++.. |... . ..|.|.-.. ..+ ..++..+.+.++||.|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC--CCCC--C-CCccceeEE-EEE---EECCEEEEEEEEECCCCh
Confidence 34458899999999999999999865 4321 1 123333221 111 123556789999999964
No 140
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.37 E-value=0.0036 Score=64.92 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=37.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccC----CCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
..|+++|..++|||+|+|+|.|.. +.+++. +.+ ..|.+- + .+.+.++||+|..+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~-~~~~~~-----------~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVER-KSGLVK-----------K-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSC-EEEECT-----------T-CTTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEE-EEEEEe-----------c-CCeEEEEECCCcCcc
Confidence 468999999999999999999875 334332 211 122221 1 246889999998654
No 141
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0035 Score=61.20 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|.|+|..++|||+|+|+|++.. |... ...|.|...... + ..++..+.+.|+||+|...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE--FPEV---YVPTVFENYVAD-I---EVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS--CC----------CCEEEEE-E---EETTEEEEEEEEECTTCTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCCc---CCCcccceEEEE-E---EECCEEEEEEEEECCCcHH
Confidence 48899999999999999999865 4321 122333322211 1 1235557899999999753
No 142
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0025 Score=63.10 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=39.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.+..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+=.....+. .++..+.+.|+||.|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE--FNMDS---KSTIGVEFATRTLE---IEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC--CCC---------CCSEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEECCCccc
Confidence 345569999999999999999999875 43221 12333211111111 134457899999999643
No 143
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.34 E-value=0.0034 Score=61.13 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCcccc-ccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~-g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.++ -|+|+|+.++|||+|+|+|.+.. |.. .+|..+ +.+.+.| ++ +.+.++||.|..
T Consensus 24 ~~~-ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~t~~~-~~~~~~~---------~~--~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTG-KLVFLGLDNAGKTTLLHMLKDDR--LGQHVPTLHP-TSEELTI---------AG--MTFTTFDLGGHI 80 (198)
T ss_dssp CCE-EEEEEEETTSSHHHHHHHHSCC--------CCCCC-SCEEEEE---------TT--EEEEEEEECC--
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhcCC--CCccCCCCCc-eeEEEEE---------CC--EEEEEEECCCcH
Confidence 344 57899999999999999999865 422 222222 2333322 22 678999999964
No 144
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.34 E-value=0.0024 Score=62.61 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=38.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeecccccccc--C-----CCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTA--L-----DGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~--~-----~g~~~~vvlLDTEGl 138 (716)
.=|.|+|..++|||+|+|+|++.. |... ...|.|+-.....+.... + .+..+.+.|+||.|.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK--FNPK---FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC--CCCE---EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC--CCcC---CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 348899999999999999999875 4221 123455433222221100 0 011478999999995
No 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0013 Score=63.07 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+..-|.|+|+.++|||+|+|+|++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999875
No 146
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.33 E-value=0.0047 Score=59.61 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=37.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|+|+|+.++|||+|+|+|.+.. |..- ..|.|.-.....+ ++ +.+.++||+|...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~--~~~~----~~t~~~~~~~~~~-----~~--~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR--LATL----QPTWHPTSEELAI-----GN--IKFTTFDLGGHIQ 79 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC--CCCC----CCCCSCEEEEEEE-----TT--EEEEEEECCCSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CCcc----ccCCCCCeEEEEE-----CC--EEEEEEECCCCHH
Confidence 368899999999999999999765 4311 1233332221111 23 6789999999753
No 147
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.32 E-value=0.0014 Score=62.30 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=24.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+. .+|..+.+.|+||.|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA--FNST---FISTIGIDFKIRTIE---LDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC------------------C---HHHHHCEEEEEEEEE---ETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCC---CCCcccceeEEEEEE---ECCEEEEEEEEcCCCCh
Confidence 45569999999999999999999765 4321 122344322211111 13555789999999964
No 148
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.31 E-value=0.0032 Score=59.41 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=38.8
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-.=|.|+|..++|||+|+|+|.+.. |.. ..| |.|.-. ...+ ..++..+.+.++||.|..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~--~~~---~~~-t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS--YQV---LEK-TESEQY-KKEM---LVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC--CCC---CSS-CSSSEE-EEEE---EETTEEEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCC---cCC-CcceeE-EEEE---EECCEEEEEEEEECCCCc
Confidence 3458899999999999999999865 532 122 333221 1111 124556788999999964
No 149
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.31 E-value=0.0018 Score=72.67 Aligned_cols=61 Identities=26% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.++. |+|+|.+++|||+|+|+|+|....+ +. ....+|..+...... .+| +.+.|+||.|+.
T Consensus 232 ~~~k-V~ivG~~nvGKSSLln~L~~~~~a~-vs-~~~gtT~d~~~~~i~-----~~g--~~l~liDT~G~~ 292 (476)
T 3gee_A 232 EGVS-TVIAGKPNAGKSTLLNTLLGQERAI-VS-HMPGTTRDYIEECFI-----HDK--TMFRLTDTAGLR 292 (476)
T ss_dssp HCEE-EEEECCTTSSHHHHHHHCC--------------------CEEEE-----ETT--EEEEEEC-----
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCcc-cC-CCCCceEEEEEEEEE-----ECC--eEEEEEECCCCC
Confidence 3454 8999999999999999999875222 21 122233333221111 123 679999999974
No 150
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.29 E-value=0.0017 Score=66.99 Aligned_cols=57 Identities=32% Similarity=0.437 Sum_probs=33.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
-|.|+|..++|||+|+|.|+|... ..++++. .+|+++- |. .. + ..+.|+||+|+...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~-g~T~~~~-~~---~~----~--~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA-SSVGAQP-GITKGIQ-WF---SL----E--NGVKILDTPGILYK 157 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC------------CCSC-EE---EC----T--TSCEEESSCEECCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc-cccCCCC-CCccceE-EE---Ee----C--CCEEEEECCCcccC
Confidence 578999999999999999998752 2334321 2444432 11 00 1 24678999998643
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.29 E-value=0.013 Score=64.63 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=35.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc--C-CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS--T-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~--~-~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.|+|+|.+++|||+|+|+|.|....+ +.+ + +.....|...|. | ..+.|+||.|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~-v~~~~g~T~d~~~~~~~~~---------~--~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY---------G--KTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEET---------T--EEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce-ecCCCCCccceeeEEEEEC---------C--eEEEEEECCCccc
Confidence 68999999999999999999876211 221 1 111234556663 2 3578899999853
No 152
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.27 E-value=0.0038 Score=59.91 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=37.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|..++|||+|+|+|++.. |... ...|.|+-..... +..+.+.|+||.|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~-------~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ--FNED---MIPTVGFNMRKIT-------KGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEEE-------ETTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCc---cCCCCceeEEEEE-------eCCEEEEEEECCCCH
Confidence 48899999999999999999765 4321 1234454433211 224789999999964
No 153
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.27 E-value=0.003 Score=68.34 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=38.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeecccc----c-cccCC-CCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPL----K-RTALD-GTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~----~-~~~~~-g~~~~vvlLDTEGl~ 139 (716)
-|+|+|.+++|||+|+|.|.|.. +.+++ |..| +.|.+-|..+- . ...|. .....+.|+||+|+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p-~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEP-NTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCC-CSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECc-eEEEEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence 37899999999999999999865 44442 3333 45766553210 0 00000 001468999999984
No 154
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.26 E-value=0.0024 Score=62.27 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|.|+|..++|||+|+|+|.+.. |.... ..|.|+-.....+. .++..+.+.|+||.|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA--FSERQ---GSTIGVDFTMKTLE---IQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC--C-------------CEEEEEEE---ETTEEEEEEEECCTTCG
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 458999999999999999999765 43211 23444322111111 13445789999999963
No 155
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0016 Score=61.76 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=35.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcc-ccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGF-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF-~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+-.-|.|+|+.++|||+|+|+|.+.. | ... .|.|+-.....+ + .+.+.++||+|...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~-----~t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGE--VVTTK-----PTIGFNVETLSY-----K--NLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE--EEEEC-----SSTTCCEEEEEE-----T--TEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--cCccC-----CcCccceEEEEE-----C--CEEEEEEECCCCHh
Confidence 44568899999999999999999765 3 122 244432221111 1 26789999999754
No 156
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0023 Score=62.85 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=37.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|.|+|+.++|||+|+|+|++.. |....+....|.|... ..+.+.++||+|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS--VRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS--CCCBCCCSSCEEETTG------------GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--CCCeeeecCceEEEEe------------eCceEEEEECCCcHH
Confidence 44568899999999999999999875 4321111112222211 125688999999753
No 157
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.21 E-value=0.006 Score=59.48 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=40.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..=|.|+|..++|||+|+|+|.+.. |.. .. ..|.|..... .+ ..++..+.+.|+||.|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT--DY-IPTVFDNFSA-NV---AVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC--CCS--SC-CCSSCCCEEE-EE---ECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCc--cC-CCccceeEEE-EE---EECCEEEEEEEEECCCcHH
Confidence 34458999999999999999999765 421 11 2233322211 11 1245568899999999753
No 158
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.21 E-value=0.0045 Score=60.81 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=39.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
=|.|+|+.++|||+|+|+|.+.. |... . ..|.|.-.. ..+ ..++..+.+.|+||.|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ESSSSEEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC--c-CCccceeEE-EEE---EECCEEEEEEEEeCCCcHh
Confidence 47899999999999999999865 5321 1 223343321 111 1245568899999999643
No 159
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.21 E-value=0.0054 Score=58.31 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=36.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
-|.|+|..++|||+|+|+|++.. |.. ...|.|+-.....+ + .+.+.|+||.|...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~--~~~----~~~t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE--VVH----TSPTIGSNVEEIVI-----N--NTRFLMWDIGGQES 77 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS--CEE----EECCSSSSCEEEEE-----T--TEEEEEEEESSSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCc----cCCcCceeeEEEEE-----C--CEEEEEEECCCCHh
Confidence 37899999999999999999876 411 11233422211111 2 26789999999753
No 160
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.20 E-value=0.9 Score=43.30 Aligned_cols=127 Identities=9% Similarity=0.065 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~ 589 (716)
+++...+..++++--+....++|++-+..+.. ..++..+.+|+..+-.+.+....|+.++..|+..+..-+.....
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~----~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q 87 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSI----SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666677777764444332 34566666766666666666666666666666555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005055 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 644 (716)
Q Consensus 590 ~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak 644 (716)
...-+.|+..+...+-.+.+. +...+..++.-...+.++++.++....+..
T Consensus 88 ~se~~~elq~ri~~L~~El~~----~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKH----LKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444555555555444433 333333333344456666666666644444
No 161
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0065 Score=58.25 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=38.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|.|+|..++|||+|+|+|++.. |.- .. ..|.|.... ..+ ..++..+.+.++||.|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA--FPE--EY-VPTVFDHYA-VSV---TVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--CCC--SC-CCSSCCCEE-EEE---ESSSCEEEEEEECCCCSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCC--CC-CCcccceeE-EEE---EECCEEEEEEEEECCCCcc
Confidence 458899999999999999999764 421 11 123232221 111 1245567899999999753
No 162
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.16 E-value=0.0088 Score=57.05 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHhhccC-CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 62 AALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 62 ~~L~~i~-~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+.|..-. .+-.-|.|+|+.++|||+|+|+|.+.. |.- ..| |.|+-.....+ ..+.+.++||+|...
T Consensus 12 ~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~-t~~~~~~~~~~-------~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 12 QTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGD--VVT---TVP-TVGVNLETLQY-------KNISFEVWDLGGQTG 78 (189)
T ss_dssp HHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSC--CEE---ECS-STTCCEEEEEE-------TTEEEEEEEECCSSS
T ss_pred HHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCC--CCC---cCC-CCceEEEEEEE-------CCEEEEEEECCCCHh
Confidence 3344434 444569999999999999999998765 421 112 44432221111 136899999999754
Q ss_pred c
Q 005055 141 Y 141 (716)
Q Consensus 141 ~ 141 (716)
.
T Consensus 79 ~ 79 (189)
T 2x77_A 79 V 79 (189)
T ss_dssp S
T ss_pred H
Confidence 3
No 163
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.16 E-value=0.0048 Score=60.20 Aligned_cols=60 Identities=25% Similarity=0.267 Sum_probs=37.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|.|+|..++|||+|+|+|.+.. |. + ...+ |.|-..... + ..++..+.+.++||.|...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~--~~-~-~~~~-t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA--FP-G-EYIP-TVFDNYSAN-V---MVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CC-C--CCC-CSEEEEEEE-E---ECC-CEEEEEEEEECCSGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC--CC-C-CcCC-eecceeEEE-E---EECCEEEEEEEEECCCchh
Confidence 357899999999999999999654 31 1 1112 223221111 1 1245667888999999753
No 164
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.15 E-value=0.0012 Score=64.15 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..=|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC--CCCHH---HHHHCCSEEEEEEE---ETTEEEEEEEECCTTCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCcccceEEEEEEE---ECCEEEEEEEEECCCcHh
Confidence 34568899999999999999999865 43221 11222111111111 134457899999999643
No 165
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.13 E-value=0.0048 Score=68.17 Aligned_cols=59 Identities=32% Similarity=0.483 Sum_probs=29.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..|+|+|..++|||+|+|+|+|.. |..-+..-..|.........+ +| ..+.|+||.|+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~--~~~v~~~~g~T~d~~~~~~~~-----~~--~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDTPGVTRDRIYSSAEW-----LN--YDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEE--CC-----------CEEEECTT-----CS--SCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCCccceEEEEEEE-----CC--ceEEEEECCCCC
Confidence 368999999999999999999875 332111112332221111110 12 457889999985
No 166
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.12 E-value=0.0061 Score=58.21 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=40.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+..-|+|+|+.++|||+|+|+|.+.. |.. -..|.|+-.....+ + .+.+.++||.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~----~~~t~g~~~~~~~~-----~--~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH----ITPTQGFNIKSVQS-----Q--GFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE----EEEETTEEEEEEEE-----T--TEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CCc----ccCcCCeEEEEEEE-----C--CEEEEEEECCCCH
Confidence 445678999999999999999999874 321 12356654332221 1 3678899999964
No 167
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.12 E-value=0.0053 Score=60.41 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=32.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-|.|+|..++|||+|+|+|++.. |... ..+ |.|.-.. ..+ ..++..+.+.|+||.|..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~--~~~-t~~~~~~-~~~---~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA--FPES--YTP-TVFERYM-VNL---QVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-----------CC-CCCEEEE-EEE---EETTEEEEEEEEEC----
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCC--CCC-ccceeEE-EEE---EECCEEEEEEEEECCCch
Confidence 458899999999999999999865 4221 112 2222111 111 123556789999999964
No 168
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.11 E-value=0.0035 Score=67.94 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=36.2
Q ss_pred EEeeCCCCCChhHHHHHhhCCC----CccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRS----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~----~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
|+++|..++|||+|+|.|+|.. ....+++.. .+|.++-... + +. .+.|+||+|+...
T Consensus 165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-gtT~~~~~~~--~------~~--~~~liDtPG~~~~ 225 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP-GTTLDMIEIP--L------ES--GATLYDTPGIINH 225 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT-TSSCEEEEEE--C------ST--TCEEEECCSCCCC
T ss_pred EEEEcCCCCchHHHHHHHHhhccCCccceeecCCC-CeEEeeEEEE--e------CC--CeEEEeCCCcCcH
Confidence 7789999999999999999861 123333221 2455442211 1 11 2688999999643
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.10 E-value=0.0047 Score=66.38 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=23.2
Q ss_pred cCCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 67 VKEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 67 i~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
......+|+|+|..++|||||+|.|++
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999999863
No 170
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.08 E-value=0.0058 Score=68.64 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=37.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..|+|+|.+++|||+|+|+|+|.. +..-+....+|..+...... .+| ..+.|+||.|+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~i~-----~~g--~~~~l~DTaG~~ 302 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIV-----IRG--ILFRIVDTAGVR 302 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEE-----ETT--EEEEEEESSCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEEEe-----cCC--eEEEEEECCCcc
Confidence 358899999999999999999875 32212222233322111111 123 568999999985
No 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.06 E-value=0.0038 Score=60.51 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=37.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..=|+|+|..++|||+|+|++.|....|. +.. .|.|.-.....+ ..+|..+.++++||-|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~--~~~--~~~~~~~~~~~~---~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDX--EVLGEDTYERTL---MVDGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------GGGCTTEEEEEE---EETTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcC--ccc--cccceeEEEEEE---EECCeEEEEEEEEeccCcc
Confidence 455699999999999999999997543232 111 111211111111 1245567889999998643
No 172
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.05 E-value=0.0029 Score=59.68 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=30.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
=|.|+|..++|||+|+|+|.+.. |.. .. ..|.|.-... .+ ..++..+.+.|+||+|..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT--FPT--DY-VPTVFDNFSA-NV---VVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CC-------------CBC-CC---C-------CEEECCCC-C
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC--CC-CCeeeeeEEE-EE---EECCEEEEEEEEECCCCh
Confidence 47899999999999999999765 422 11 2233322211 11 124555778899999964
No 173
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.02 E-value=0.0081 Score=58.64 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=37.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..-|.|+|..++|||+|+|+|++.. |.-.. .+.+.....+ .+ .++..+.+.++||+|..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~--~~~~~~~~~~--~~----~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQ--TSITDSSAIY--KV----NNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBC--CCCSCEEEEE--EC----SSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccc--CCcceeeEEE--Ee----cCCCccEEEEEECCCCh
Confidence 3458899999999999999999765 43211 1222222221 11 11224789999999964
No 174
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.011 Score=58.71 Aligned_cols=63 Identities=24% Similarity=0.234 Sum_probs=38.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+..=|+|+|..++|||+|+|++.|....|. +.. .|.|.-.....+ ..+|..+.++++||-|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~--~~~--~~~g~d~~~~~i---~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDC--EVLGEDTYERTL---MVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTC--CC-----CCTTEEEEEE---EETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CcC--CccceeeEEEEE---EECCeeeEEEEeecCCCc
Confidence 345689999999999999999998653342 111 112221111111 124556788999999854
No 175
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.003 Score=60.66 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=36.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.=|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||.|.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT--FTPAF---VSTVGIDFKVKTVY---RHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT--TCCCE---EEEETTTEEEEEEE---ETTTTEEEEEECHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC--CCccc---CCCeeeEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence 347899999999999999999764 32111 11222211111111 1344578999999994
No 176
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.94 E-value=0.005 Score=67.75 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=36.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC---Cc-cccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS---SG-FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~---~g-F~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.-.+|+|+|+.++|||||+|.|+|.. .| ..++ +. +.|+..+++..|. . ..+.+.|+.|++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~-g~-~~t~~~~v~q~~~------~--~~ltv~D~~g~~ 131 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG-VV-EVTMERHPYKHPN------I--PNVVFWDLPGIG 131 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC-C-----CCCEEEECSS------C--TTEEEEECCCGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEEC-Ce-ecceeEEeccccc------c--CCeeehHhhccc
Confidence 45589999999999999999999942 22 1122 11 2233223433221 1 146778999986
No 177
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.93 E-value=0.0016 Score=72.84 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=32.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
++. |+|+|++++|||+|+|.|+|.. +...+.....|..+.... + ..+| +.+.|+||.|+.
T Consensus 224 ~~k-V~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~--i---~~~g--~~v~liDT~G~~ 283 (462)
T 3geh_A 224 GLK-VAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVESQ--L---VVGG--IPVQVLDTAGIR 283 (462)
T ss_dssp CEE-EEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHHE--E---EETT--EEEEECC-----
T ss_pred CCE-EEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEEE--E---EECC--EEEEEEECCccc
Confidence 443 8999999999999999999864 322222222333221110 0 0123 578999999974
No 178
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.87 E-value=0.0044 Score=67.16 Aligned_cols=58 Identities=26% Similarity=0.192 Sum_probs=34.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCC-----ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~-----gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
-|+++|..++|||+|+|.|+|... ...+++. ..+|+.+-... + .+ .+.|+||+|+...
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-~gtT~~~~~~~--~----~~----~~~liDtPG~~~~ 224 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF-PGTTLDLIDIP--L----DE----ESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC-C----CEEEEE--S----SS----SCEEEECCCBCCT
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCC-CCeecceEEEE--e----cC----CeEEEeCCCcCcH
Confidence 367899999999999999998631 1222222 22455443321 1 11 2788999999654
No 179
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.87 E-value=0.0096 Score=62.59 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+|+|..++|||+|+|+|++....|.. + .-..|.|+-.....+ +| .+.+.++||+|...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~~~~~~~-~-~~~~Ti~~~~~~~~~-----~~-~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSNYSAFDT-R-RLGATIDVEHSHLRF-----LG-NMTLNLWDCGGQDV 64 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSCCCTGGG-G-GCCCCCSEEEEEEEE-----TT-TEEEEEEEECCSHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccc-c-CcCCccceEEEEEEe-----CC-ceEEEEEECCCcHH
Confidence 789999999999999999987544421 1 112344544432211 12 47899999999753
No 180
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.86 E-value=0.009 Score=58.85 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=40.0
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.=|.|+|..++|||+|+|+|++.. |.. ....|.|.-... .+ ..++..+.+.++||.|...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~--~~~---~~~~t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC--YPE---TYVPTVFENYTA-CL---ETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEE-EE---EC--CEEEEEEEEECCSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC--CCC---CcCCeeeeeEEE-EE---EECCEEEEEEEEECCCCHh
Confidence 458899999999999999999765 532 112355554422 11 1245568899999999643
No 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.80 E-value=0.0063 Score=58.77 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=37.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+-.-|.|+|+.++|||+|+|+|++.. |.- . ..|.|+-..... ...+.+.++||+|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~~---~-~~t~~~~~~~~~-------~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IVT---T-IPTIGFNVETVE-------YKNICFTVWDVGGQD 84 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CEE---E-EEETTEEEEEEE-------ETTEEEEEEECC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--ccc---c-CCcCceeEEEEE-------ECCEEEEEEECCCCH
Confidence 344559999999999999999998765 431 1 225563322111 123789999999974
No 182
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.71 E-value=0.32 Score=44.02 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=70.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005055 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (716)
Q Consensus 546 k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r 625 (716)
.-|+..|.+|+++++....+++.++.+ +++++-...+++.+|+.-++.. ..+.+.|..++.-
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~le--------------ldn~~~~~edfk~KyE~E~~~r----~~~E~di~~lrK~ 77 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVE--------------RDNLAEDIMRLREKLQEEMLQR----EEAENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHhhhc
Confidence 457888888888888887776666554 5566677788888999877654 4456677777766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 660 (716)
Q Consensus 626 ~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~ 660 (716)
+..+--.-.+++.++++.++|+.-.|+-|+.=+++
T Consensus 78 lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 78 VDNASLARLDLERKVESLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665566778888888888888888888765543
No 183
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.66 E-value=0.013 Score=64.72 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=35.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
..-|+|+|..++|||+|+|+|+|.. |..-+.....|...... ++. .+| ..+.|+||.|+..
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~d~~~~--~~~---~~~--~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDT--SFT---YNQ--QEFVIVDTAGMRK 235 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST--TEEEC---------CCE--EEE---ETT--EEEEETTHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCC--ceeecCCCCceeeeeEE--EEE---ECC--eEEEEEECCCcCc
Confidence 3468999999999999999999876 33212222234332111 111 123 3588999999843
No 184
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.66 E-value=0.18 Score=45.75 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHH
Q 005055 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 693 (716)
Q Consensus 614 ~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~ 693 (716)
-|.+.|++|+..+..+...-+.+.-+++.++..++++|.||+.-+ ..++..|..+...++-+.++-..--+|.+.+.+.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 366677777777777777777888889999999999999999999 6899999999999999998887777777766655
Q ss_pred HH
Q 005055 694 LA 695 (716)
Q Consensus 694 ~~ 695 (716)
-.
T Consensus 96 ~e 97 (119)
T 3ol1_A 96 QE 97 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.65 E-value=2.5 Score=57.13 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=41.2
Q ss_pred HHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005055 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (716)
Q Consensus 567 ~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E 646 (716)
+.++.+....++++....++|...+..+.+++.+|++.+.+ ++.++.+++..+ .|+..+++=+...-.|
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e----k~~L~~e~~~~~-------~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE----TEQIKTESSKVK-------NKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHhhhhc
Confidence 44444444444555555555555555555555555555544 344455555444 4444444444444555
Q ss_pred HHHHHHHHHHHH
Q 005055 647 VEEWKRKYGVAV 658 (716)
Q Consensus 647 ~~~w~~kY~~~~ 658 (716)
-.+|...-+.+-
T Consensus 2086 k~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2086 RGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 667765444443
No 186
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.64 E-value=0.023 Score=62.10 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=40.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcc-cccc---CCCcccceEEeeccc-cc--cccCCCC---ceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGF-QVAS---THRPCTKGLWLWSAP-LK--RTALDGT---EYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF-~~g~---~~~~~TkGIWmw~~p-~~--~~~~~g~---~~~vvlLDTEGl~ 139 (716)
.|+|+|+.++|||||+|.|.|.. + .+++ ++...+.|...+..+ +. ....++. ...+.++||.|+.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~--~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSV--LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST--TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 68999999999999999999854 2 2222 123346787666421 00 0000011 1357899999984
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.62 E-value=0.011 Score=63.05 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
..+..+|+|+|+.++|||||+|.|++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35667889999999999999999974
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.55 E-value=0.028 Score=63.84 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccC----------C-----CcccceEEeeccccccccCCCCceeEEEEe
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----------H-----RPCTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~----------~-----~~~TkGIWmw~~p~~~~~~~g~~~~vvlLD 134 (716)
...-|+|+|..++|||+|+|+|++....+.-.+. + ...+.||-+-...... +...+.+.|+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~---~~~~~~i~liD 88 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF---PYHDCLVNLLD 88 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE---EETTEEEEEEC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE---EECCeEEEEEE
Confidence 4567999999999999999999964322211000 0 0124455433222111 12247799999
Q ss_pred CCCCcc
Q 005055 135 SEGIDA 140 (716)
Q Consensus 135 TEGl~~ 140 (716)
|+|..+
T Consensus 89 TPG~~d 94 (529)
T 2h5e_A 89 TPGHED 94 (529)
T ss_dssp CCCSTT
T ss_pred CCCChh
Confidence 999743
No 189
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.53 E-value=0.031 Score=61.96 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=37.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccC---CCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~---~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
+..-|+|+|..++|||+|+|+|+|... +.+++. +.....+.+-| +| ..+.|+||.|+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~---------~~--~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTY---------NQ--QEFVIVDTAGMRK 255 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEE---------TT--EEEEETTGGGTTT
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEE---------CC--ceEEEEECCCCCc
Confidence 455689999999999999999998752 223221 11111222222 22 4688999999853
No 190
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.40 E-value=0.0044 Score=61.02 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
+-.=|.|+|..++|||+|+|++++.. |.-.. ..|.|+-.....+. .++..+.+.++||.|..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE--FEKKY---VATLGVEVHPLVFH---TNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH--HTCEE---ETTTTEEEEEEEEE---ETTEEEEEEEEEECSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEeCCChH
Confidence 44458899999999999999966432 21110 12223222221111 13445789999999964
No 191
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.35 E-value=0.015 Score=63.55 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred ccCCCEEEEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeeccc-cc--c--ccCC-CCceeEEEEeC
Q 005055 66 LVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAP-LK--R--TALD-GTEYNLLLLDS 135 (716)
Q Consensus 66 ~i~~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p-~~--~--~~~~-g~~~~vvlLDT 135 (716)
.+..+. -|+|+|+.++|||+|+|.|.|.. +.+++ |..| +.|...+..+ +. . ..|. .-...+.|+||
T Consensus 18 ~i~~~~-kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p-~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 18 RFGTSL-KIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDP-NESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp CSSSCC-CEEEECCSSSSHHHHHHHHHC---------------CC-SEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred hccCCC-EEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCc-eeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 344343 37899999999999999999875 33332 3333 3455544221 00 0 0000 00135899999
Q ss_pred CCCc
Q 005055 136 EGID 139 (716)
Q Consensus 136 EGl~ 139 (716)
.|+.
T Consensus 94 pGl~ 97 (396)
T 2ohf_A 94 AGLV 97 (396)
T ss_dssp CC--
T ss_pred CCcc
Confidence 9984
No 192
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.31 E-value=0.015 Score=65.57 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhh
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
.+..||+|+|++++|||||+|.|+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999999
No 193
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.29 E-value=0.0054 Score=60.16 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=24.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC---CccccccCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS---SGFQVASTH 104 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~---~gF~~g~~~ 104 (716)
+|+|+||.|+|||||++.|+|.. .|+.+.++.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~tt 40 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTT 40 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCchhceeeeeeec
Confidence 68899999999999999998742 345554443
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.28 E-value=0.021 Score=62.95 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=31.9
Q ss_pred EEeeCCCCCChhHHHHHhhCCC---CccccccCC-CcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 74 VSVCGRARQGKSFILNQLLGRS---SGFQVASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~---~gF~~g~~~-~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
|+|+|+.++|||||+|.|+|.. .|.. +... .+.|.++-..+..+. .++....+-+.||.|++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~-~~~~~~~~t~~~~~i~~v~q---~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYP-GPSHRIKKTVQVEQSKVLIK---EGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCC-SCC-----CCEEEEEECC---------CEEEEEEECC----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCC-CcccCCccceeeeeEEEEEe---cCCcccceeeeechhhhh
Confidence 4999999999999999999874 2210 0000 122333322111111 123335678899999863
No 195
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.26 E-value=0.011 Score=63.30 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
++-|+|+|..++|||+|+|+|.+.. +.+.+ ++...+-|++-+. + ...++|+||+|+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~--------~--~~~~~l~DtPG~i 217 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETD--------D--GRSFVMADLPGLI 217 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECS--------S--SCEEEEEEHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeC--------C--CceEEEecCCCCc
Confidence 4579999999999999999999764 33321 2222344554331 1 1468999999974
No 196
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.25 E-value=0.015 Score=58.07 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=36.7
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
|.|+|..++|||.|++++.+.. |.-. -..|.|+-.....+. .++..+.+-+.||.|..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~--f~~~---~~~Tig~d~~~k~~~---~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC--CC-------------CEEEEEE---CSSCEEEEEEECCSCTT
T ss_pred EEEECcCCcCHHHHHHHHHhCC--CCCC---cCCccceEEEEEEEE---ecceEEEEEEEECCCch
Confidence 6789999999999999998655 6432 234666655443332 24667889999999964
No 197
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.24 E-value=0.0047 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++|||||++.|+|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999754
No 198
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.22 E-value=0.14 Score=58.38 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 618 ~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
++..++.+...+|.++...++++...++|++.|+++..+++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444446666666666777777777777777776666
No 199
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.21 E-value=0.026 Score=63.14 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+..-|+|+|...+|||+|+|+|++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~ 57 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDL 57 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455557899999999999999998664
No 200
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.17 E-value=0.049 Score=59.39 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|-.-|+|+|..++|||+|+|+|.|.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 45557999999999999999999985
No 201
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.13 E-value=0.032 Score=65.43 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
..+..|+|+|..++|||+|+|+|++
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999994
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.12 E-value=0.021 Score=62.95 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+-+.-|+|+|+.++|||||||.|+|..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 333349999999999999999999974
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.11 E-value=0.015 Score=60.19 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|+|+|+.++|||||||.|+|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 204
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.11 E-value=0.026 Score=58.82 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=40.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
...-|.|+|..++|||+|+|++.+.. |. ....+.|...+... + ..++..+.+.|+||.|....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~--~~~~~t~~~~~~~~--~---~~~~~~~~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FP--GEYIPTVFDNYSAN--V---MVDGKPVNLGLWDTAGLEDY 216 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CC--CSCCCCSEEEEEEE--E---EETTEEEEEEEEEECCCGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CC--cccCCcccceeEEE--E---EECCEEEEEEEEeCCCchhh
Confidence 33458899999999999999999654 31 11223332223221 1 12455677889999997543
No 205
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.0085 Score=57.65 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++|||||++.|++..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999753
No 206
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.99 E-value=0.0042 Score=60.34 Aligned_cols=60 Identities=27% Similarity=0.224 Sum_probs=37.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~ 140 (716)
.-|.|+|..++|||+|+|+|++.. |.-. ..+ |.|-... ..+ ..++..+.+.++||.|...
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~--~~~-t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNA--FPGE--YIP-TVFDNYS-ANV---MVDGKPVNLGLWDTAGQED 90 (204)
Confidence 348899999999999999999754 4211 112 2222111 111 1234556778999999743
No 207
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.98 E-value=0.066 Score=58.47 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..|...|+|+|...+|||+|+|+|.|..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCc
Confidence 4677889999999999999999999763
No 208
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.98 E-value=0.018 Score=65.34 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=52.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccc----------cCCC-----cccceEEeeccccccccCCCCceeEEEEe
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----------STHR-----PCTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g----------~~~~-----~~TkGIWmw~~p~~~~~~~g~~~~vvlLD 134 (716)
.+-.|+|+|..++|||+|+|+|++........ +++. ....||=+-...... +...+.+.|+|
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~---~~~~~~i~liD 88 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF---PYKDYLINLLD 88 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE---EETTEEEEEEC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE---EeCCEEEEEEE
Confidence 46689999999999999999997322111000 0000 001122111111110 01236789999
Q ss_pred CCCCcccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 135 SEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 135 TEGl~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
|+|..++. ..+.-++...=.-++|+.....+..+....+
T Consensus 89 TPG~~df~-----~~~~~~l~~aD~allVvDa~~g~~~~t~~~~ 127 (528)
T 3tr5_A 89 TPGHADFT-----EDTYRTLTAVDSALMVIDAAKGVEPRTIKLM 127 (528)
T ss_dssp CCCSTTCC-----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred CCCchhHH-----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 99975322 1233344444445667776665655555443
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.92 E-value=0.032 Score=60.45 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccccc----CCCcccceEEeecccc-----ccccCCC-----CceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPL-----KRTALDG-----TEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~----~~~~~TkGIWmw~~p~-----~~~~~~g-----~~~~vvlLDTEGl 138 (716)
-|+|+|++++|||+|+|.|.+.. +.+++ |+. .|.|+.-...+- ....+.. ....+.|+||+|+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~-pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATID-KNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGS-TTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceec-cceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 37899999999999999999753 22221 222 355665221100 0000111 1257899999998
Q ss_pred c
Q 005055 139 D 139 (716)
Q Consensus 139 ~ 139 (716)
.
T Consensus 80 ~ 80 (368)
T 2dby_A 80 V 80 (368)
T ss_dssp C
T ss_pred c
Confidence 4
No 210
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.91 E-value=0.035 Score=63.87 Aligned_cols=104 Identities=17% Similarity=0.293 Sum_probs=52.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccc---cccCCC-----cccceEEeeccccc--cccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~---~g~~~~-----~~TkGIWmw~~p~~--~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+--|+|+|...+|||+|+|+|++....+. ++.++- -.+.||=+-..... ...++|..+.+-|+||+|..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 466789999999999999999985321111 111110 11344443322111 11235666889999999975
Q ss_pred ccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
++. ....-++...=.-++||.....+..+.+..+
T Consensus 85 dF~-----~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~ 118 (600)
T 2ywe_A 85 DFS-----YEVSRALAACEGALLLIDASQGIEAQTVANF 118 (600)
T ss_dssp GGH-----HHHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred hHH-----HHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 432 1233344444445667766655555554443
No 211
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.90 E-value=0.013 Score=61.49 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEeeCCCCCChhHHHHHhhCC
Q 005055 74 VSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~ 94 (716)
|+|+|+.++|||+|+|.|+|.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999999986
No 212
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.86 E-value=0.024 Score=64.20 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=37.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccc-----cccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLK-----RTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~-----~~~~~g~~~~vvlLDTEGl~ 139 (716)
+-.=|+++|..++|||+|+|+|.|.. |. .....|.|+-+...-.+ ....++..+.+.+.||.|..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~--~~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGET--FD---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 34568899999999999999999875 43 11233555544322100 00123446889999999954
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.81 E-value=0.011 Score=58.59 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSS 96 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~ 96 (716)
+|+|+||.++|||+|+|.|++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 577999999999999999997643
No 214
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.77 E-value=0.022 Score=59.67 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++++|+.++|||||||.|+|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 78999999999999999999863
No 215
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.77 E-value=0.038 Score=63.62 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=49.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCccc---cccCCC-----cccceEEeeccccc--cccCCCCceeEEEEeCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~---~g~~~~-----~~TkGIWmw~~p~~--~~~~~g~~~~vvlLDTEGl~ 139 (716)
.+--|+|+|...+|||+|+++|++....+. ++.++- -.+.||=+-..... ....+|..+.+-|+||+|..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 456689999999999999999986432221 111111 11345544322111 11125667889999999974
Q ss_pred ccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
++. ..+.-+|...=.-++||.....+..+.+..+
T Consensus 83 dF~-----~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~ 116 (599)
T 3cb4_D 83 DFS-----YEVSRSLAACEGALLVVDAGQGVEAQTLANC 116 (599)
T ss_dssp GGH-----HHHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred HHH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 332 1233344444445666666555554444443
No 216
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.73 E-value=0.028 Score=61.36 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC--CCc----cc---cccC-CCcccceEEeeccccccccCCCCceeEEEEeCCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR--SSG----FQ---VAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~--~~g----F~---~g~~-~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl 138 (716)
.+..-|+|+|...+|||+|+|+|++. ..| |. +... ....+.||=+-...... +.....+.|+||+|.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~---~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY---ETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE---ECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe---ccCCeEEEEEECCCh
Confidence 46667999999999999999999873 111 11 1000 00113343211110000 112357899999997
Q ss_pred cccccCCcchhHHHHHhhhccceEEEccCCCCchHhhhhh
Q 005055 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (716)
Q Consensus 139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (716)
..+ ....+..+...=.-++||.....+..+..+.+
T Consensus 86 ~~f-----~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l 120 (405)
T 2c78_A 86 ADY-----IKNMITGAAQMDGAILVVSAADGPMPQTREHI 120 (405)
T ss_dssp GGG-----HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH
T ss_pred HHH-----HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH
Confidence 532 12233333333334566666544444444433
No 217
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.71 E-value=0.25 Score=42.19 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=63.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 005055 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (716)
Q Consensus 619 i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~~~~~~ 696 (716)
|.+|+.++..+-..-+.+.-+++.++..+++|+.||+.=+ ..++..|..+...++-+.++-..--+|...+.+.-.|
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~-~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666677777888899999999999999999 7999999999999999999988888888877776543
No 218
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.66 E-value=0.06 Score=59.30 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+..-|+|+|...+|||+|+|+|++..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 466678999999999999999998654
No 219
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.63 E-value=0.0069 Score=68.87 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=48.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHH
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF 152 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IF 152 (716)
+|+|+|...+|||+|+|+|.+.. |.... ....|..+-.+..++ +++ ..+.|+||+|...+......
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~~--~~~~~-~~giT~~i~~~~v~~----~~g--~~i~~iDTPGhe~f~~~~~~----- 71 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKTQ--VAAME-AGGITQHIGAFLVSL----PSG--EKITFLDTPGHAAFSAMRAR----- 71 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHHH--HHHSS-SCCBCCCTTSCCBCS----SCS--SCCBCEECSSSCCTTTSBBS-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ccccc-CCceeEEEeEEEEEe----CCC--CEEEEEECCChHHHHHHHHH-----
Confidence 58999999999999999998754 33221 111222222222211 123 35778899997544332111
Q ss_pred HHhhhccceEEEccCCCCchHhhhhhH
Q 005055 153 SLAVLLSSMFIYNQMGGIDESAIDRLS 179 (716)
Q Consensus 153 aLa~LLSS~~IyN~~g~i~e~~l~~L~ 179 (716)
.+...=.-++||.....+..+..+.+.
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~ 98 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQ 98 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHH
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHH
Confidence 001101124566655555555555443
No 220
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.58 E-value=0.025 Score=62.24 Aligned_cols=57 Identities=28% Similarity=0.251 Sum_probs=38.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCcccccc---CCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
..+|+|+|+.++|||||||.|.|.. ..+.. +....+.|...+. + ...+.+.||.|+.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~---------~-~~~~~l~DtpGli 216 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVS---------E-EERFTLADIPGII 216 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECS---------S-SCEEEEEECCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEec---------C-cceEEEEeccccc
Confidence 4579999999999999999999874 22221 1122344554331 1 2457889999974
No 221
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.52 E-value=0.042 Score=61.53 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=48.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCC-----ccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCc
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGT 146 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~-----gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~ 146 (716)
..|+|+|...+|||+|+|+|.|... .+... .....|..+-.+..++ + ...+.|+||+|...+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~-----~--~~~i~iiDtPGh~~~~---- 87 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPES-QKRGITIDIGFSAFKL-----E--NYRITLVDAPGHADLI---- 87 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEE-----T--TEEEEECCCSSHHHHH----
T ss_pred CEEEEECCCCChHHHHHHHHHCCCccccccccccc-ccCccEEecceEEEEE-----C--CEEEEEEECCChHHHH----
Confidence 4589999999999999999998651 11110 0011222221111111 1 2578899999963211
Q ss_pred chhHHHHHhhhccceEEEccCCCCchHhhhhhHH
Q 005055 147 YSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (716)
Q Consensus 147 ~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (716)
...+..++..=.-++||.....+..+..+++.+
T Consensus 88 -~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~ 120 (482)
T 1wb1_A 88 -RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI 120 (482)
T ss_dssp -HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHH
T ss_pred -HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHH
Confidence 122323332222345666555555666665543
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.44 E-value=0.021 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+-.+|+|+|+.++|||||++.|.|.-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566789999999999999999998753
No 223
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.43 E-value=0.036 Score=61.96 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=38.3
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
-.-|+|+|..++|||+|+|+|.+.. |.. .. .|.|+=.-.. +...+.+.|+||.|...+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~--~~~---~~-~T~~~~~~~~-------~~~~~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQ--SVT---TI-PTVGFNVETV-------TYKNVKFNVWDVGGQDKI 379 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCC---CC-CCSSEEEEEE-------ESSSCEEEEEEECCCGGG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC--CCC---cC-CccceeEEEE-------EeCCEEEEEEECCCcHHH
Confidence 3457799999999999999999875 321 11 2444332211 122368999999996543
No 224
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.38 E-value=0.026 Score=59.96 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~ 139 (716)
-|.|+|..++|||+|+|+|.+.. |.- . . .|.|+-..... +..+.+.|+||.|..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~--~~~-~--~-pT~~~~~~~~~-------~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE--IVT-T--I-PTIGFNVETVE-------YKNISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC--CEE-E--E-EETTEEEEEEE-------ETTEEEEEEECC---
T ss_pred eEEEECCCCccHHHHHHHHhCCC--CCC-c--c-cccceEEEEEe-------cCcEEEEEEECCCCH
Confidence 58899999999999999999876 421 1 1 26665543321 234789999999953
No 225
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.31 E-value=1.5 Score=38.45 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005055 593 EISDWKRK 600 (716)
Q Consensus 593 e~~e~~r~ 600 (716)
++..+.|+
T Consensus 45 Ei~sL~kk 52 (101)
T 3u1c_A 45 DIVQLEKQ 52 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.30 E-value=0.015 Score=61.47 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++|||||+|.|+|.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7899999999999999999985
No 227
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.26 E-value=1 Score=41.21 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~ 589 (716)
..++..++-.+.+++.+++.++.+-..++..+.+.+.+|+..+.+++..+..+.. +|..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~---------------------eL~~ 93 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE---------------------ALQK 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hHHH
Confidence 4567777777778888887777777666666666666666555554444444333 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVL 622 (716)
Q Consensus 590 ~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l 622 (716)
++.+.....+.|+.+++-+- .|..+|+.+
T Consensus 94 ~r~e~~~ql~EYq~LlnvKl----~Ld~EIatY 122 (129)
T 3tnu_B 94 AKQDMARLLREYQELMNTKL----ALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 56666666778888777543 355556544
No 228
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.16 E-value=0.12 Score=60.62 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=41.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCccccccCCC-----------cccceEEeeccccccc----cCCCCceeEEEE
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----------PCTKGLWLWSAPLKRT----ALDGTEYNLLLL 133 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~-----------~~TkGIWmw~~p~~~~----~~~g~~~~vvlL 133 (716)
..+..|+|+|..++|||+|+++|+.....|.-...+. ..+.||=+-....... ..++..+.+.|+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 3466799999999999999999985432221100000 0123433322211110 023455889999
Q ss_pred eCCCCcc
Q 005055 134 DSEGIDA 140 (716)
Q Consensus 134 DTEGl~~ 140 (716)
||+|..+
T Consensus 88 DTPG~~d 94 (704)
T 2rdo_7 88 DTPGHVD 94 (704)
T ss_pred eCCCccc
Confidence 9999743
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.10 E-value=0.023 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999864
No 230
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.08 E-value=0.092 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+..-|+|+|...+|||+|+|+|++..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 44468899999999999999997653
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.03 E-value=0.02 Score=55.40 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++|||||++.|.|..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 78999999999999999998753
No 232
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.063 Score=61.99 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+..-|+|+|...+|||+|+|+|++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 344457899999999999999999774
No 233
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=94.01 E-value=0.082 Score=61.89 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
..+..|+|+|..++|||+|+|+|+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.00 E-value=0.023 Score=56.00 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+|+|+||.++|||||++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378899999999999999999764
No 235
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.97 E-value=0.83 Score=41.91 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHH
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~ 589 (716)
..++..++-.+.+++.+++.++.+-..++..+.+.+.+|+..+.+++..+..+.. +|..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~---------------------eL~~ 95 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE---------------------QLAQ 95 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 5567777778888888887777777666666666666666555554444443333 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVL 622 (716)
Q Consensus 590 ~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l 622 (716)
++.+.....+.|+.+++-+- .|..+|+.+
T Consensus 96 ~r~em~~ql~EYq~Ll~vKl----~Ld~EIatY 124 (131)
T 3tnu_A 96 LRCEMEQQNQEYKILLDVKT----RLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 55556666777777777533 355555543
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.86 E-value=0.026 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 237
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.86 E-value=0.1 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
++..-|+|+|...+|||+|+|+|.|..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456679999999999999999999763
No 238
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.78 E-value=0.024 Score=55.67 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||||+|.|.|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999864
No 239
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.75 E-value=0.03 Score=64.46 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=52.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccc-cCCCcccceEEeeccc----cccccC-----CCCceeEEEEeCCCCcccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA-STHRPCTKGLWLWSAP----LKRTAL-----DGTEYNLLLLDSEGIDAYD 142 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g-~~~~~~TkGIWmw~~p----~~~~~~-----~g~~~~vvlLDTEGl~~~~ 142 (716)
+|+|+|...+|||+|+|+|+|.. |.-+ ++.-..|-|......+ ...... +.....+.|+||+|..++.
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred EEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 68999999999999999999753 2110 0000123343321110 000000 0111258999999986543
Q ss_pred cCCcchhHHHHHhhhccceEEEccCCCCchHhhhhhHH
Q 005055 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (716)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (716)
..... ++...=.-++||.....+..+.++.+..
T Consensus 85 ~~~~r-----~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 85 TLRKR-----GGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TSBCS-----SSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHH-----HHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 22111 1111122357787776666776666543
No 240
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.75 E-value=0.027 Score=62.85 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=29.9
Q ss_pred eeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 54 FRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 54 l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..++++.+..+. ..+..-|+|+|....|||+|+|+|++.
T Consensus 28 ~~~~~~~~~~~~--~k~~~~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 28 NEVDQELLKDMY--GKEHVNIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp TTCCSTTHHHHS--CCEEEEEEEEECGGGTHHHHHHHHHHH
T ss_pred cccCHHHHHhhc--CCCeeEEEEEECCCCCHHHHHHHHHHH
Confidence 445666665554 356677999999999999999999854
No 241
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.68 E-value=0.92 Score=50.15 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 605 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i 605 (716)
+.+.=.|+++.++++.+++.+++...++.+.-+..+.+.|........+....|.+.-
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S 112 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS 112 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3344445556666666666666666666665555555555444444445544444443
No 242
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.67 E-value=0.031 Score=57.26 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.66 E-value=0.029 Score=56.96 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+ -+++|+|+.++||||||+.|+|-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999999864
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.63 E-value=0.025 Score=55.36 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++|||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999875
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.61 E-value=0.033 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.59 E-value=0.071 Score=55.88 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+++++|+.++|||||+|.|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.58 E-value=0.025 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-.+|+|+|+.++|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999875
No 248
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=93.56 E-value=0.14 Score=55.33 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
.|+|+|....|||+|+|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999998
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.55 E-value=0.034 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.53 E-value=0.029 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.51 E-value=0.035 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 252
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.50 E-value=0.034 Score=57.36 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999864
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.48 E-value=0.036 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
-+|+++|+.++|||||++.+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4799999999999999999663
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.45 E-value=0.036 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999999864
No 255
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.44 E-value=0.056 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 78999999999999999999863
No 256
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.43 E-value=0.036 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.42 E-value=0.037 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.037 Score=56.77 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.33 E-value=0.029 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++||||||+.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999985
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.29 E-value=0.039 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 261
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.29 E-value=0.038 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|+|+|+.++|||||++.|+|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999986
No 262
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.28 E-value=0.067 Score=57.96 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999864
No 263
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.25 E-value=0.022 Score=64.10 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=47.6
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCcccccCCcchhHHH
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF 152 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~~~~~~~d~~IF 152 (716)
+|+|+|...+|||+|+|+|.+.. |..+.. ...|.-+-.+..+. ++ ..+.|+||+|...+......
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~-~GIT~~i~~~~v~~-----~~--~~i~~iDTPGhe~f~~~~~~----- 70 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRSTK--VASGEA-GGITQHIGAYHVET-----EN--GMITFLDTPGHAAFTSMRAR----- 70 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHHH--HSBTTB-CCCCCCSSCCCCCT-----TS--SCCCEECCCTTTCCTTSBCS-----
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CccccC-CCeeEeEEEEEEEE-----CC--EEEEEEECCCcHHHHHHHHH-----
Confidence 68999999999999999998642 332211 01111111111111 22 35778999997544321111
Q ss_pred HHhhhccceEEEccCCCCchHhhhhhH
Q 005055 153 SLAVLLSSMFIYNQMGGIDESAIDRLS 179 (716)
Q Consensus 153 aLa~LLSS~~IyN~~g~i~e~~l~~L~ 179 (716)
.+...=.-++||.....+..+..+.+.
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~ 97 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQ 97 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHH
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHH
Confidence 001000125667655545555555553
No 264
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.24 E-value=0.041 Score=56.24 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999874
No 265
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.23 E-value=0.041 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.312 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 78999999999999999999864
No 266
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.19 E-value=0.028 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++|||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999853
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.19 E-value=0.041 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999996
No 268
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.16 E-value=3.7 Score=35.90 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhHHhH
Q 005055 559 ADDYTSRINNLQGENISLREKSSSLSKTV 587 (716)
Q Consensus 559 ~e~~~~~~~~l~~k~~~le~~~~~~~~~l 587 (716)
.++...+++.|+.++..+++.+.....+|
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333
No 269
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.12 E-value=0.043 Score=56.17 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 270
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.10 E-value=0.15 Score=61.03 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
...+--|+|+|...+|||+|+|+|++.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 346778999999999999999999864
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.07 E-value=0.044 Score=56.47 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++||||||+.|+|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.07 E-value=0.038 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.|+|+|+.++|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999864
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.03 E-value=0.044 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.00 E-value=0.038 Score=55.30 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++|||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999864
No 275
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.99 E-value=0.046 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 276
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.95 E-value=0.047 Score=56.08 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999863
No 277
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=92.94 E-value=0.052 Score=59.90 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCCCcc
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGF 98 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~~gF 98 (716)
.+..-|+|+|..++|||+|+|+|++...+|
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i 33 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFI 33 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence 355678999999999999999998653334
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.94 E-value=0.047 Score=56.70 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 279
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.93 E-value=0.037 Score=51.82 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.3
Q ss_pred eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 56 v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|.+++..|..+ +=.++.|+|+.++|||+|++.+.+.
T Consensus 23 ~n~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 23 ENAELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CTHHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred ccHHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 477888888777 3346778999999999999999874
No 280
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.89 E-value=4.1 Score=35.48 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhHHH
Q 005055 563 TSRINNLQGENISLRE 578 (716)
Q Consensus 563 ~~~~~~l~~k~~~le~ 578 (716)
..++..|+.++..+++
T Consensus 43 E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 43 EEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 281
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.89 E-value=0.038 Score=63.57 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.1
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
..++.-|+|+|...+|||+|+|+|++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence 45777899999999999999999975
No 282
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.85 E-value=0.069 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEeeCCC---------CCChhHHHHHhhCC
Q 005055 73 VVSVCGRA---------RQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~---------rtGKS~LlN~llg~ 94 (716)
=|+|+|.. ++|||+|+|+|.+.
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 37788888 99999999999984
No 283
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=92.80 E-value=0.15 Score=55.52 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-.-|+|+|...+|||+|+|+|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 346899999999999999999874
No 284
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.73 E-value=0.7 Score=39.36 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=48.0
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (716)
Q Consensus 580 ~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~ 651 (716)
-+.+.-++++++-...+++.+|+.-++- .....+.|..|+.-+..+-=.-.+++.++++.++|+.--|
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~----R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQ----REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344456777888889999999998775 3556777777877766666566677777777777776433
No 285
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.70 E-value=0.043 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-.||+|+|+.++|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34568999999999999999999875
No 286
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.66 E-value=0.044 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.6
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-.+|+|+|+.++|||||++.|.|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 287
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.61 E-value=0.21 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+...|+|+|..++|||+|+|+|++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45778999999999999999999953
No 288
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=92.54 E-value=11 Score=38.86 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=8.1
Q ss_pred hHHHHhhHHHHHHHHHHHHH
Q 005055 676 SKEMQQREDVLREEFSSTLA 695 (716)
Q Consensus 676 ~e~~q~~e~~~~~~~~~~~~ 695 (716)
+++.+.+=.=+-++|..+|+
T Consensus 218 ~e~f~~~~~p~~e~~~~~l~ 237 (273)
T 3s84_A 218 VEEFRRRVEPYGENFNKALV 237 (273)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHH
Confidence 33333333333444444443
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.53 E-value=0.16 Score=56.27 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhh
Q 005055 70 PIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
+-.||.|+|++++||||+++.|+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35789999999999999999997
No 290
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.49 E-value=0.056 Score=57.01 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSG 97 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~g 97 (716)
++-|+.|+|+.++|||||||.|+|...|
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~ 30 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHG 30 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCC
Confidence 6789999999999999999999976533
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.47 E-value=0.051 Score=55.84 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.0
Q ss_pred HHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 60 Al~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++-+. + .|=.+|+|+||.++||||||+.|+|.
T Consensus 16 vl~~i~-i-~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-H-RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-G-CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-h-CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 444444 3 34468999999999999999999874
No 292
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=92.40 E-value=0.11 Score=57.64 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=23.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGF 98 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF 98 (716)
+..-|+|+|....|||+|+|+|++...+|
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~ 34 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGI 34 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCc
Confidence 44568899999999999999998753333
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.38 E-value=0.048 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++|||||++.|++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7899999999999999999863
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.33 E-value=0.034 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|.|+|+.++|||||++.|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 67889999999999999998654
No 295
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.30 E-value=0.053 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999998764
No 296
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.27 E-value=0.1 Score=57.57 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
+..+|+|+|++++||||+++.|++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 297
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.20 E-value=0.067 Score=56.10 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhhC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg 93 (716)
-.||+++|+.++||||+++.|++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45888999999999999999984
No 298
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.18 E-value=0.067 Score=57.66 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++|||||+|.|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999864
No 299
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.18 E-value=7.8 Score=36.44 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQA 640 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql 640 (716)
+......|+.++...+.++..++.|+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444443
No 300
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.15 E-value=7.9 Score=36.46 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005055 568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (716)
Q Consensus 568 ~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~ 647 (716)
+|+.....-.++......++..+.....+...||+.+=.+. ..++..|..|+.++....++...+.+.|+++-.|+
T Consensus 60 sLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv----~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV----TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444445555555542222 23666677777777777788888888888888888
Q ss_pred HHHHHHHHHHHH
Q 005055 648 EEWKRKYGVAVR 659 (716)
Q Consensus 648 ~~w~~kY~~~~~ 659 (716)
.+...++.++-+
T Consensus 136 ~~~~~~~~~~~~ 147 (155)
T 2efr_A 136 EELLSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhcccchHHHHH
Confidence 877777777664
No 301
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.13 E-value=0.07 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|+|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.10 E-value=0.06 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+=-||+++|+.++|||||++.|+|..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344589999999999999999998754
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.06 E-value=0.054 Score=52.96 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=24.6
Q ss_pred EEeeCCCCCChhHHHHHhhCCC-C--ccccccCCCc
Q 005055 74 VSVCGRARQGKSFILNQLLGRS-S--GFQVASTHRP 106 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~-~--gF~~g~~~~~ 106 (716)
|.|+||.++||++|++.|+... . +|.+.+|+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 4589999999999999998653 3 3556666544
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.03 E-value=0.052 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=15.4
Q ss_pred EEEeeCCCCCChhHHHHHhh-CCC
Q 005055 73 VVSVCGRARQGKSFILNQLL-GRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll-g~~ 95 (716)
+|+|+||.++|||||++.|. |..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 79999999999999999999 764
No 305
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.99 E-value=6.3 Score=35.02 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQAL 641 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~ 641 (716)
..+.++++++|+..+=||.+=|+..++
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666654
No 306
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.97 E-value=0.053 Score=57.20 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++|||||++.|+|--
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 379999999999999999999863
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.95 E-value=0.11 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhh
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
.+..||+|+|+.++||||+...|+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999998
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.92 E-value=0.059 Score=56.80 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.+|+|+||.++|||||++.|+|--
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 478999999999999999998753
No 309
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.91 E-value=5.9 Score=34.48 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005055 594 ISDWKRKY 601 (716)
Q Consensus 594 ~~e~~r~y 601 (716)
+..++|++
T Consensus 46 i~sL~kKi 53 (101)
T 3u59_A 46 QQGLQKKL 53 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.90 E-value=0.093 Score=51.09 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSS 96 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~ 96 (716)
+..+|+|+|+.++|||||++.|.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999998743
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.81 E-value=0.072 Score=55.69 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999864
No 312
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.75 E-value=7.5 Score=35.36 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=63.1
Q ss_pred HHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005055 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE---IEVLKSRSTAAEARLAAAREQALSAQE 645 (716)
Q Consensus 569 l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~---i~~l~~r~~~~eerl~~~~~ql~~ak~ 645 (716)
-..++..+++.+..+...+....+...++..++..++.....+...+++. +++.+.++..+..+-..+++++.-+.+
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777777777766544444444333 222333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005055 646 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679 (716)
Q Consensus 646 E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~ 679 (716)
..++--..-..+. ..|--+++.+.-+++-+++.
T Consensus 91 rleeeee~~~~L~-~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 91 RLEDEEEMNAELT-AKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555 56777777777777766654
No 313
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=91.71 E-value=4.1 Score=36.68 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005055 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 554 dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl 633 (716)
+.+...|....+.+.+......+++++..+.. .....-++..|.+++.+.++...+|..+|+..+..++-.| ++
T Consensus 31 ~eka~AE~A~~~La~~~~l~~~i~er~~~i~~-----~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE-~i 104 (119)
T 3etw_A 31 EERAQADAARQALAQNEQVYNELSQRAQRLQA-----EANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE-KI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33444555555556665555556666555443 1256678889999999999999999999998887777776 66
Q ss_pred HHHHH
Q 005055 634 AAARE 638 (716)
Q Consensus 634 ~~~~~ 638 (716)
.++++
T Consensus 105 k~lr~ 109 (119)
T 3etw_A 105 QALRA 109 (119)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.70 E-value=0.059 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||++.|.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.66 E-value=0.064 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
-+++|+|+.++|||||++.|+|
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.65 E-value=0.065 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQ 99 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~ 99 (716)
+|.|+|+.+|||||+.+.| ..-||.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L--~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL--KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH--HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH--HHCCCc
Confidence 6899999999999999999 444554
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.58 E-value=0.09 Score=52.87 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.4
Q ss_pred EEEEEeeCCCCCChhHHHHHhh
Q 005055 71 IGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~ll 92 (716)
.-+|+|+|+.++|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 318
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.57 E-value=0.17 Score=55.96 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhh
Q 005055 70 PIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
+-.||.++|++++||||+++.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.53 E-value=0.1 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|+|+|+.+|||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 320
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.53 E-value=0.15 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 78999999999999999999864
No 321
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.48 E-value=0.076 Score=51.63 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-.+|+|+|+.++|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999865
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.34 E-value=0.061 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-+|+|+|+.++|||+|++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 558899999999999999999975
No 323
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.26 E-value=0.073 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-.+|+|+|+.++|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999999875
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.25 E-value=0.12 Score=56.91 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=31.3
Q ss_pred eeeCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 54 FRMDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 54 l~v~~eAl~~L~~-i~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+.+.++...+|.. +..|=.+|+|+||.++||||||+.|+|.
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4456665555543 3467779999999999999999999874
No 325
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.23 E-value=0.1 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHhh
Q 005055 70 PIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
+-.+|+|+|+.++|||||++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33489999999999999999998
No 326
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.18 E-value=0.099 Score=56.48 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+|+.++||||||+.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 327
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.13 E-value=0.1 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||||.|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999863
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.12 E-value=0.1 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.00 E-value=0.09 Score=56.59 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|=.+|+|+||.++||||||+.|+|.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999874
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.93 E-value=0.11 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|+|+||.++|||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999983
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.92 E-value=0.098 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999963
No 332
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.91 E-value=0.085 Score=59.55 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.1
Q ss_pred eCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 56 MDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 56 v~~eAl~~L~~-i~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+.+++++.|.. +...- +|+|+|+.+||||||||.|+|.-
T Consensus 245 ~~~~~l~~l~~~v~~g~-~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKF-SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTC-CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCC-EEEEECCCCCCHHHHHHHHHhhC
Confidence 46788888764 33333 38999999999999999998753
No 333
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.89 E-value=0.13 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-.+|+|+|+.++|||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999864
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.85 E-value=0.095 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.+|||||+++.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.80 E-value=0.11 Score=55.17 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
...||+|+|+.++|||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999998754
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.78 E-value=0.11 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.76 E-value=0.14 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=23.5
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 68 ~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
..+=.+|+|+|+.++|||||++.|.+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999998753
No 338
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.76 E-value=0.11 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 78999999999999999999864
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.66 E-value=0.12 Score=49.74 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCCCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV 100 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~~gF~~ 100 (716)
...+|+|+|+.+|||||+.+.|... |+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~ 35 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--GYPV 35 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--TCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--CCEE
Confidence 3457999999999999999999876 6544
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.57 E-value=0.11 Score=50.43 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA 101 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g 101 (716)
+|+|+|+.++||||+++.|.+ . |+.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-GAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-TCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-CCEEE
Confidence 699999999999999999998 3 55443
No 341
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.36 E-value=0.11 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-.+|.|+|+.++|||||++.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357999999999999999998764
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.31 E-value=0.11 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=21.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-.||+|+|+.++|||||++.|+|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999863
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.18 E-value=0.15 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-.+|+|+|+.++|||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998865
No 344
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.12 E-value=0.1 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||+|.|+|.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68899999999999999999863
No 345
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.08 E-value=0.1 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 78999999999999999999863
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.94 E-value=0.084 Score=50.80 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=24.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC--CCcccc
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR--SSGFQV 100 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~--~~gF~~ 100 (716)
++.||+|+|+.++|||||++.|++. ..|+.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v 35 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 35 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCee
Confidence 3558999999999999999999864 334544
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.92 E-value=0.12 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.||+|+|+.++|||||++.|+|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 348
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=89.91 E-value=0.28 Score=60.29 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+..-|+|+|....|||+|+|+|.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 56778999999999999999999864
No 349
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.90 E-value=0.13 Score=50.33 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=29.9
Q ss_pred eeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 54 FRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 54 l~v~~eAl~~L~~i--~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+.-|.+..+.+... ...+.+|+|+|..++|||+|+|+|++.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 44455555555432 245678999999999999999999864
No 350
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.89 E-value=0.12 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.++|+.|+|||+|++.+++.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999864
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.75 E-value=0.069 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-+|+|+|+.++|||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 352
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.73 E-value=0.21 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.2
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+-.|+|+|+.++|||||||.|.|..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3459999999999999999999973
No 353
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.71 E-value=0.16 Score=47.19 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.++||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998744
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.64 E-value=0.14 Score=55.43 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|=.+|+|+|+.++||||||+.|+|.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999999874
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.61 E-value=0.16 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-|++|+|+.++||||||+.|.|.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999985
No 356
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.61 E-value=13 Score=34.62 Aligned_cols=97 Identities=12% Similarity=0.219 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHh
Q 005055 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKT 586 (716)
Q Consensus 510 ~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dl---k~~~e~~~~~~~~l~~k~~~le~~~~~~~~~ 586 (716)
+....++...-..-+..++.|..++++......+-.+.|++.-..+ ....+....+....+.+|..|++.+...+..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777778889999999998888888888899875544 7778888888888999999999887776666
Q ss_pred HHHHH---HHHHHHHHHHHHHHH
Q 005055 587 VDSLK---NEISDWKRKYDQVLT 606 (716)
Q Consensus 587 le~~k---~e~~e~~r~y~~~i~ 606 (716)
|.+++ ...++..-.|++.|.
T Consensus 117 lKsLE~~eekas~rE~~yee~I~ 139 (147)
T 2b9c_A 117 LKSLEDKVEELLSKNYHLENEVA 139 (147)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHT
T ss_pred HHhhHHhHHHHHHHHHHHHHHHH
Confidence 65544 445666666665543
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.56 E-value=0.14 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+=.+|+|.|+.|+|||||++.|.|.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999876
No 358
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.54 E-value=0.097 Score=56.26 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+++|+||.++||||||+.|+|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
No 359
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.33 E-value=0.16 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.++||||||+.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 78999999999999999999864
No 360
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=89.28 E-value=2.9 Score=34.81 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHH
Q 005055 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 598 (716)
Q Consensus 549 ee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~ 598 (716)
=..|++|+-.++++.++..+++.+..+--++++++.++|+.-..|+.-+.
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 34577778888888888888888888888888888888877776655443
No 361
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.25 E-value=0.15 Score=54.28 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+=.||+|+|+.++|||||++.|+|.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999864
No 362
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=88.93 E-value=5.2 Score=37.39 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=47.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHH
Q 005055 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 691 (716)
Q Consensus 619 i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~~ 691 (716)
...|++|...-++|+..++.||..|+.-+++=-+||+.+.++.. .++....-.+--.+.+..+=..|..++.
T Consensus 40 ~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~-~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV-IIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788889999999999999999999999999874332 2333333333334444444444554444
No 363
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.81 E-value=14 Score=40.77 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=4.4
Q ss_pred chHHHHHHHHHH
Q 005055 458 SIDNVVKVLDGL 469 (716)
Q Consensus 458 ~~~~~~~~l~~l 469 (716)
+...|...++.+
T Consensus 322 g~~eF~~Eve~L 333 (487)
T 3oja_A 322 GSETERLECERE 333 (487)
T ss_dssp ---CHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 445555544443
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.75 E-value=0.2 Score=56.93 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 365
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=88.71 E-value=5.9 Score=33.35 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 584 SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 623 (716)
Q Consensus 584 ~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~ 623 (716)
..+|..++.+.....+.|+.++|-+ -.+..+|+.++
T Consensus 39 E~eL~~~r~e~~~q~~EYq~LlnvK----~~Ld~EIatYR 74 (84)
T 1gk4_A 39 QDEIQNMKEEMARHLREYQDLLNVK----MALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHH
Confidence 3344445555555566666666643 23445555444
No 366
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.65 E-value=8.1 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~w~~k 653 (716)
|.+.|++|+..+..+...-+.+.-+++..+.+..+++.|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555666666666666554
No 367
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.2 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|.|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999985
No 368
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=88.47 E-value=14 Score=40.38 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005055 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (716)
Q Consensus 554 dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl 633 (716)
+.+..++++.+.+..++...+....-...+.+.|....+...+....|.+..++ |+.+|+.++.++..-=.+|
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~e-------Le~ri~yIK~kVd~qi~~I 134 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTE-------LRRRIVTLKQRVATQVNRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777777777777777777776655 7777887777755444777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005055 634 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 677 (716)
Q Consensus 634 ~~~~~ql~~ak~E~~~w~~kY~~~~~~~Ka~leq~~~~~~~~~e 677 (716)
..|+.-++....++. +||..|.++.+.++
T Consensus 135 rvLq~~l~~q~skIQ---------------RLE~dI~~q~~~Cr 163 (491)
T 1m1j_A 135 KALQNSIQEQVVEMK---------------RLEVDIDIKIRACK 163 (491)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhc
Confidence 777777666666665 46666666655543
No 369
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.35 E-value=9.6 Score=42.03 Aligned_cols=18 Identities=11% Similarity=-0.103 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005055 641 LSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 641 ~~ak~E~~~w~~kY~~~~ 658 (716)
......+++=+.+|+.++
T Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 459 GEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHHHHHH
Confidence 333333343444444444
No 370
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.30 E-value=0.18 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.||+|+|+.++|||||++.|+|.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 48999999999999999999874
No 371
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.24 E-value=0.21 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|+|+|+.+|||||+++.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.14 E-value=0.25 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+.+|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.09 E-value=0.2 Score=48.83 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
++.|+|+.++|||+|++.|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7889999999999999999854
No 374
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.04 E-value=0.23 Score=57.23 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+++|+|+.++||||||+.|.|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 7999999999999999999985
No 375
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=88.03 E-value=2.4 Score=41.47 Aligned_cols=88 Identities=8% Similarity=0.168 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005055 564 SRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---L---TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 637 (716)
Q Consensus 564 ~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i---~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~ 637 (716)
+....+......+++..+.+..+++..+.=..+|..+|+++ | -+..++.+.++..++ .+|+.+-++.
T Consensus 76 s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~-------e~eeeS~~l~ 148 (192)
T 2p22_C 76 DQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTK-------KLDEESSQLE 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 33333334444566666666777777777777888888444 2 123455666777777 6666666666
Q ss_pred HHHHHH--HHHHHHHHHHHHHHH
Q 005055 638 EQALSA--QEEVEEWKRKYGVAV 658 (716)
Q Consensus 638 ~ql~~a--k~E~~~w~~kY~~~~ 658 (716)
+..-.. ..|..+|.++|-..=
T Consensus 149 ~~F~~~~~e~dv~~Fl~~y~~~R 171 (192)
T 2p22_C 149 TTTRSIDSADDLDQFIKNYLDIR 171 (192)
T ss_dssp HSCSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccchHHHHHHHHHHHH
Confidence 664333 567888888886543
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.96 E-value=0.17 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
...++|+|+.++|||||++.|+|.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999863
No 377
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.83 E-value=0.26 Score=48.17 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=29.2
Q ss_pred eeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 54 FRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 54 l~v~~eAl~~L~~i--~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+.-+++..+.+... ..++.+|+|+|..++|||+|+|+|++.
T Consensus 19 ~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 19 LKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 44444444444432 245778999999999999999999864
No 378
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.74 E-value=18 Score=40.04 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=9.4
Q ss_pred HHHHHhhhHHHHHHhhHHhHHHHH
Q 005055 568 NLQGENISLREKSSSLSKTVDSLK 591 (716)
Q Consensus 568 ~l~~k~~~le~~~~~~~~~le~~k 591 (716)
..+.+..+++..+....++|+...
T Consensus 132 ~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 132 KTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHH
Confidence 333333344444444444444333
No 379
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.72 E-value=0.22 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.++|||||++.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999754
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.71 E-value=0.27 Score=47.23 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQV 100 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~ 100 (716)
+|+|+|+.+|||||+.+.|...-.|+.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 6899999999999999999866444543
No 381
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.52 E-value=6.6 Score=34.45 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 005055 615 VCSEIEVLKSRSTAAEARLAAAREQ 639 (716)
Q Consensus 615 ~~~~i~~l~~r~~~~eerl~~~~~q 639 (716)
+..++.+++.++..+.+++..+..+
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~ 93 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERE 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333333333
No 382
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.48 E-value=0.22 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.||+|+|+.|+|||||++.|+|.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 48999999999999999999874
No 383
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.44 E-value=11 Score=32.53 Aligned_cols=51 Identities=8% Similarity=0.199 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHH
Q 005055 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 598 (716)
Q Consensus 548 lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~ 598 (716)
++.....+..+-+.+-.+++.+..+....++...++.-+++.+..+...++
T Consensus 44 le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 44 VQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555566666666666666666666666666665555444
No 384
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.40 E-value=0.27 Score=55.84 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 385
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.11 E-value=0.28 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 386
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.10 E-value=0.28 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++||||||+.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 387
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.98 E-value=5.9 Score=33.55 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 623 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~ 623 (716)
.+|..++.+.....+.|+.++|-+ -.+..+|+.++
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK----~~Le~EIatYR 76 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIK----LALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHH
Confidence 344444555555566666666643 23445555444
No 388
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.94 E-value=0.27 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.|+|||||++.|+|--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999999999864
No 389
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.92 E-value=0.25 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-+++|+|+.++||||||+.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999999873
No 390
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.89 E-value=0.28 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.|+|||||++.|+|--
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999863
No 391
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.81 E-value=0.27 Score=56.40 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.|+|||||++.|+|--
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999864
No 392
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.75 E-value=0.33 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+.++||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 393
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.75 E-value=0.33 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999754
No 394
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.69 E-value=0.28 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.|+|||||++.|+|--
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 379999999999999999999864
No 395
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.54 E-value=6.6 Score=35.44 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 634 AAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 634 ~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
.++++..+.+.+-+.--|.+|..++
T Consensus 95 ~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 95 SEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555566665554
No 396
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.46 E-value=0.32 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.++||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999753
No 397
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.33 E-value=0.33 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++||||||+.|+|..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999999964
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.28 E-value=0.54 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+++|+|+.++|||+|+..|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.26 E-value=0.21 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.++|||||++.|+|.-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999863
No 400
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.25 E-value=0.26 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+||.|+|||||++.|+|--
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 79999999999999999999864
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.09 E-value=0.27 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++|||+|++.|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 402
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.98 E-value=16 Score=31.56 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 005055 558 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (716)
Q Consensus 558 ~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~ 604 (716)
.+.++..+.+....++..|.+++..-...-..+++++.......+++
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344333333333344444444444444444
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.71 E-value=0.39 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.+||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 37899999999999999999864
No 404
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.65 E-value=0.33 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
++.|+|+.++|||+|+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999997
No 405
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.64 E-value=0.32 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
-+|+|+|+.++|||||++.|+|--
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 406
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.53 E-value=14 Score=31.00 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005055 552 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK 607 (716)
Q Consensus 552 i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~ 607 (716)
|.-|+.++++++.+++.|..+..++......+..+...++.|...|..+...++..
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555666666666666666666666667777777777777787777777653
No 407
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=85.52 E-value=0.86 Score=48.42 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=35.0
Q ss_pred EEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeeccccccccCCCCceeEEEEeCCCCccc
Q 005055 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~p~~~~~~~g~~~~vvlLDTEGl~~~ 141 (716)
|-++|..++|||.|++++.+.. |+-....-..|-|+-.-. + +..+.+-+.||.|.+.+
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~--~~~~~~~~~~Tig~~~~~--v------~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNM--QPLDTLYLESTSNPSLEH--F------STLIDLAVMELPGQLNY 59 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCC--CSGGGTTCCCCCSCCCEE--E------CSSSCEEEEECCSCSSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCccceecCeeeeeeEE--E------ccEEEEEEEECCCchhc
Confidence 5678999999999999988653 211000112244443221 1 12367899999997543
No 408
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.41 E-value=0.35 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
++.|+|+.++|||+|+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999973
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.40 E-value=0.19 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.+|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 410
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.36 E-value=0.43 Score=45.12 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.++|+.+|||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 411
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.32 E-value=0.44 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|.|+|+.+|||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.29 E-value=0.31 Score=51.55 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=36.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCccccccCCCcccceEEeecc-ccccccCCCCceeEEEEeCCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSA-PLKRTALDGTEYNLLLLDSEGI 138 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~g~~~~~~TkGIWmw~~-p~~~~~~~g~~~~vvlLDTEGl 138 (716)
+|.|+||+++|||+|...|+....|.-+.......-+|+-+... |-+. ..+| +...|+|...+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~-E~~g--vphhlid~~~~ 68 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAE-EMDG--VPHHLIDIKDP 68 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHH-HHTT--CCEESSSCBCT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHH-HHcC--CCEEEeccCCh
Confidence 68899999999999999998665443233222223344433332 2111 1123 55677787654
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.22 E-value=0.36 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCCCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGRSS 96 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~~~ 96 (716)
.+|+|+||.++|||||++.|.|...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3789999999999999999997543
No 414
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.17 E-value=0.37 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.++||||+++.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999764
No 415
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.14 E-value=0.46 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|-|+|+.+|||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999864
No 416
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.09 E-value=7.5 Score=33.43 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE 620 (716)
Q Consensus 561 ~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~ 620 (716)
.|..+...|+.+...|+.++..+.. +..+.+...|+..|.+.+...+.+...-+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG------QGKSRLGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433322 13455666777777775555555555555
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.93 E-value=0.45 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|.|+++|||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998653
No 418
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.88 E-value=0.46 Score=45.91 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+..+|.|+|+.++||||+...|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3447899999999999999999854
No 419
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.72 E-value=12 Score=41.06 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHHHHH
Q 005055 291 RPEFRAGLDALTKFV 305 (716)
Q Consensus 291 ~~eF~~~l~~l~~~i 305 (716)
+|++++.++.+.+.+
T Consensus 199 ~~~~~~al~~~~~l~ 213 (471)
T 3mq9_A 199 NAGAKAGLTFLVDLI 213 (471)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 467777777666554
No 420
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.71 E-value=0.47 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|.|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 421
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.68 E-value=0.48 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|.|+.+|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 422
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.60 E-value=0.44 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|.|+|+.++||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 423
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.49 E-value=0.46 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.+|||||+.+.|...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 424
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=84.45 E-value=53 Score=36.19 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005055 632 RLAAAREQALSAQEEVE 648 (716)
Q Consensus 632 rl~~~~~ql~~ak~E~~ 648 (716)
.+..++.+.+.++.|..
T Consensus 403 dv~~~~a~~d~~~~~~s 419 (551)
T 2b5u_A 403 DVNNKQAAFDAAAKEKS 419 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhccc
Confidence 35555556666666655
No 425
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.43 E-value=0.5 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|.|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 426
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.35 E-value=22 Score=38.89 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=9.3
Q ss_pred chhHHHHHhhhcc-ceEEEcc
Q 005055 147 YSTQIFSLAVLLS-SMFIYNQ 166 (716)
Q Consensus 147 ~d~~IFaLa~LLS-S~~IyN~ 166 (716)
+|.++|++-...+ ..++||.
T Consensus 113 ~dGk~YglP~~~~~~~l~YNk 133 (471)
T 3mq9_A 113 YNGKLIAYPIAVEALSLIYNK 133 (471)
T ss_dssp ETTEECEEEEEEEECEEEEET
T ss_pred ECCEEEEEeeeccceEEEEEh
Confidence 3444555443333 3456664
No 427
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.24 E-value=15 Score=32.56 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 570 QGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 649 (716)
Q Consensus 570 ~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~ak~E~~~ 649 (716)
..+...|......+.++|+....+..++... ++.+ .++...++..|..++...|..|.+++..--.++.+..+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~----w~~k---~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDF----IKQS---SEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 005055 650 WKRK 653 (716)
Q Consensus 650 w~~k 653 (716)
...+
T Consensus 78 qL~~ 81 (112)
T 1x79_B 78 QMAV 81 (112)
T ss_dssp HHHH
T ss_pred HHHH
No 428
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.03 E-value=0.49 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|.|+|+.+|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999874
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.03 E-value=0.39 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
++.|+|+.++|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999986
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.86 E-value=0.4 Score=51.33 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 59 EAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 59 eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.|++-+..+.. =-+++|+|+.++||||||+.|+|..
T Consensus 60 ~ald~ll~i~~-Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 60 RAIDGLLTCGI-GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEeeeeecC-CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46666533321 1278999999999999999999874
No 431
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=83.75 E-value=40 Score=34.17 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc
Q 005055 433 ADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYET 475 (716)
Q Consensus 433 s~~~C~~~l~~le~~l~~~~~~~~~~~~~~~~~l~~ll~eY~~ 475 (716)
+...|.++..-+.+|..- -..|.+.+.++...|..
T Consensus 26 g~~~~~el~~f~~eRa~i--------E~eYak~L~kLa~~~~~ 60 (305)
T 2efl_A 26 GIDILEKYIKFVKERTEI--------ELSYAKQLRNLSKKYQP 60 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcc
Confidence 344566665555555432 12466666677666643
No 432
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.63 E-value=0.48 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+++|||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 433
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.53 E-value=0.55 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..+|+|+|+.+|||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
No 434
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.45 E-value=0.53 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.+|.|+|+.+|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 435
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.41 E-value=0.5 Score=44.00 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.+|||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998643
No 436
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.29 E-value=0.54 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.+|||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 437
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.29 E-value=0.69 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEeeCCCCCChhHHHHHhhCC
Q 005055 71 IGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
..+|.|+|+.+|||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 438
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.28 E-value=0.75 Score=44.78 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=28.5
Q ss_pred eCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 56 MDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 56 v~~eAl~~L~~i--~~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+.++++.|... ..+-..|-|.|+.|||||+|+..+...
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356777777643 223445678999999999999998753
No 439
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.19 E-value=0.44 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
|-+ |.++||.|||||+|++.|+|.
T Consensus 44 ~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 44 PAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CCe-EEEECCCCCcHHHHHHHHHHH
Confidence 445 899999999999999999875
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.19 E-value=0.59 Score=47.16 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|+|.|+.++||||+.+.|..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.09 E-value=0.44 Score=52.66 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 59 EAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 59 eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
.|++-+..+. +=-+++|+|+.++||||||+.|+|..
T Consensus 146 ~vld~vl~i~-~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALLTVG-RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeEEec-CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4666653332 11268999999999999999999864
No 442
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.08 E-value=0.46 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
|-+ |.++|+.+||||+|++.|.+.
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 345 889999999999999999875
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.02 E-value=0.66 Score=45.19 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.4
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-.+|+|+|..+|||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35568999999999999999998753
No 444
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=82.96 E-value=45 Score=34.16 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHhhH
Q 005055 542 SEYLKRYDDAINDKKKLADDYTSRI-NNLQGENISLREKSSSLS 584 (716)
Q Consensus 542 ~~~~k~lee~i~dlk~~~e~~~~~~-~~l~~k~~~le~~~~~~~ 584 (716)
.+.+.++..++.+++..+.-|..+. +.+......+.+.+..+.
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~a 145 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYA 145 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444455555555555555444443 334444444444444433
No 445
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.90 E-value=0.25 Score=53.46 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.3
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+++|+|+.++|||+||+.|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998764
No 446
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.90 E-value=0.41 Score=57.94 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHhhCCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
+|+|+|+.|+||||||+.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 447
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.83 E-value=0.65 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.184 Sum_probs=21.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-.+|.|+|+.++||||+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998764
No 448
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=82.70 E-value=26 Score=31.34 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 586 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ--ALSAQEEVEEWKRKYGVAVREAKA 663 (716)
Q Consensus 586 ~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~q--l~~ak~E~~~w~~kY~~~~~~~Ka 663 (716)
.|.+++.+-..+..+=++.-+..++.-+..+..++..+.--..++++++.+... ..-=+.+....-.+|+.++ .
T Consensus 10 ~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~----~ 85 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL----K 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----H
Confidence 344444444444443344455555656666677776655455555555555443 1122455666666666555 4
Q ss_pred HHHHHHHHHHHhhHHHHhh
Q 005055 664 ALEKAAIVQERTSKEMQQR 682 (716)
Q Consensus 664 ~leq~~~~~~~~~e~~q~~ 682 (716)
.||++|.-.+..+...++=
T Consensus 86 ~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 86 KLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888888877654
No 449
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.65 E-value=0.59 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.+|||||+.+.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 450
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.32 E-value=0.69 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.++|+.++||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999743
No 451
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.31 E-value=0.71 Score=42.80 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+.+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 452
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.29 E-value=23 Score=30.89 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 005055 628 AAEARLAAAR 637 (716)
Q Consensus 628 ~~eerl~~~~ 637 (716)
.++.++..++
T Consensus 89 ~l~~~~~~l~ 98 (112)
T 1l8d_A 89 ELERELRRID 98 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 453
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.24 E-value=32 Score=37.97 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 005055 542 SEYLKRYDDAINDKKKLADDYTSRI 566 (716)
Q Consensus 542 ~~~~k~lee~i~dlk~~~e~~~~~~ 566 (716)
+..+..||..+.+++.+-..+.+++
T Consensus 26 a~aka~Ye~~~ae~~a~n~~i~aeN 50 (497)
T 3iox_A 26 ADAKAAYEAAVAANNAANAALTAEN 50 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3334445555555555444444443
No 454
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.18 E-value=0.68 Score=44.99 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.7
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
.|.|+|+.+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.97 E-value=0.14 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+++|+||.++|||+||+.|.|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999998863
No 456
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.88 E-value=0.75 Score=55.69 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+++|+|+.|+||||||+.|.|
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999994
No 457
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.86 E-value=0.47 Score=50.06 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+...+.++||.|+|||+|++.|+|.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999875
No 458
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.79 E-value=0.53 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.||+|+|+.++||||+++.|++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 459
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.71 E-value=0.77 Score=42.75 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=20.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+-+|.|.|..+|||||+...|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998643
No 460
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.68 E-value=0.57 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+++|||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999864
No 461
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.67 E-value=0.75 Score=43.87 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCcccc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSGFQV 100 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~gF~~ 100 (716)
+|.|+|+.+|||||+.+.|....-|+.+
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~ 39 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQH 39 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6899999999999999999765224433
No 462
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.66 E-value=0.62 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+.++||||+.+.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999873
No 463
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=81.35 E-value=2.2 Score=38.50 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Q 005055 505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584 (716)
Q Consensus 505 l~~~i~~e~~~l~~k~~s~e~e~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~ 584 (716)
..+.++.++..++.+|.+++.+...+.-.+++..+. +. ..+..|..+..+|+..+..-.
T Consensus 17 kL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq-------~~--------------~~~d~L~lQ~esmeaalkmEr 75 (130)
T 3cl3_D 17 RLEAATKECQALEGRARAASEQARQLESEREALQQQ-------HS--------------VQVDQLRMQGQSVEAALRMER 75 (130)
T ss_dssp ----------------------------------CT-------TT--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344558888888888888777766665555443322 22 223333444444444444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 005055 585 KTVDSLKNEISDWKRKYDQVLTKQ 608 (716)
Q Consensus 585 ~~le~~k~e~~e~~r~y~~~i~~~ 608 (716)
..-..-|.-.++++..|..++++.
T Consensus 76 ~~~~eEKrkLAqLQ~AY~~LfqeY 99 (130)
T 3cl3_D 76 QAASEEKRKLAQLQVAYHQLFQEY 99 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666667777766553
No 464
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=81.33 E-value=69 Score=35.20 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHHhhHHhHHHHH
Q 005055 527 MKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGE---------------NISLREKSSSLSKTVDSLK 591 (716)
Q Consensus 527 ~~~l~k~~e~~~~~~~~~~k~lee~i~dlk~~~e~~~~~~~~l~~k---------------~~~le~~~~~~~~~le~~k 591 (716)
+..|.+..+++........++++ .+.+=+.+...+..|+..+ +..+..+++.+..+|++-+
T Consensus 71 ~~~L~~~y~~L~~~a~~Rr~~Le----~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e 146 (450)
T 3r6n_A 71 IYQLEEEYENLLKASFERMDHLR----QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKE 146 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHch
Confidence 34455555555555444444443 2333333344444444433 3344556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 005055 592 NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA---------QEEVEEWKRKYGVAV 658 (716)
Q Consensus 592 ~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl~~~~~ql~~a---------k~E~~~w~~kY~~~~ 658 (716)
..+.+...+=+.++...--..+.++..++.|+++=..+.+.+..-+..|+.+ =.|++.|.++=+.+|
T Consensus 147 ~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l 222 (450)
T 3r6n_A 147 KELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSI 222 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666554333345566666666665444444444333334333 367888888766665
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.19 E-value=0.81 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEEeeCCCCCChhHHHHHhh
Q 005055 71 IGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 71 V~VVsV~G~~rtGKS~LlN~ll 92 (716)
..+|+|+|+.+|||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 466
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.17 E-value=0.8 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=19.2
Q ss_pred EEEeeCCCCCChhHHHHHhhC
Q 005055 73 VVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg 93 (716)
+|.|+|+.+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
No 467
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.13 E-value=4.5 Score=37.16 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005055 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV-DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (716)
Q Consensus 547 ~lee~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~l-e~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r 625 (716)
..+..+..|.....+...+....+.....++.++..|+-.| +.+-+= +-+-+.....+......|+.+
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~M-----------Va~ar~~~~~~e~r~~~L~~q 111 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNL-----------VADARMEKYAIEILNKRLTEQ 111 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH-----------HHHTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555666666666665555555 211111 222233334444555555555
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005055 626 STAAEARLAAAREQALSAQ 644 (716)
Q Consensus 626 ~~~~eerl~~~~~ql~~ak 644 (716)
+...+..+.++++||...|
T Consensus 112 l~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 112 LREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp TTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554433
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.12 E-value=0.57 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.++.|+|+.++|||+|++.|++.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.08 E-value=0.52 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEEeeCCCCCChhHHHHHhhC
Q 005055 72 GVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg 93 (716)
.||+|.|+.+|||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.05 E-value=0.72 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+-.||+|+|++++||||++..|++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4468999999999999999999863
No 471
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.04 E-value=15 Score=31.16 Aligned_cols=37 Identities=5% Similarity=0.057 Sum_probs=22.9
Q ss_pred HHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005055 571 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK 607 (716)
Q Consensus 571 ~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~ 607 (716)
.++..+++++..+.+.++..++...++..++..+++.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666666555
No 472
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.83 E-value=0.62 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhCCC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg~~ 95 (716)
|-+ |.|+|+.+||||+|++.|.+..
T Consensus 73 ~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCe-EEEECCCcChHHHHHHHHHHHc
Confidence 345 8899999999999999998753
No 473
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.81 E-value=3.8 Score=37.65 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Q 005055 660 EAKAALEKAAIVQERTSKEMQQREDVLREEF 690 (716)
Q Consensus 660 ~~Ka~leq~~~~~~~~~e~~q~~e~~~~~~~ 690 (716)
...+.+++.....++.+.+...+=+.++..+
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL 126 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQL 126 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777666555554443
No 474
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.80 E-value=8.3 Score=33.66 Aligned_cols=72 Identities=11% Similarity=0.225 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005055 552 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLK 623 (716)
Q Consensus 552 i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~---i~~~k~~~~~~~~~i~~l~ 623 (716)
+.++.+++-..+--+++|--+.+.+-=++.+|.+.|+..+....+++|.|.+- +..+|...+.+..+++.++
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777788888888888888888888888888888876 3444444455555555444
No 475
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.79 E-value=18 Score=31.71 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhh
Q 005055 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV------------------LTKQKAMEDQVCSEIEVLKSRS 626 (716)
Q Consensus 565 ~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~------------------i~~~k~~~~~~~~~i~~l~~r~ 626 (716)
+...+..++..+..++..+..++...+.++.+...-.+++ -.++......+..++.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e------ 80 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIE------ 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 627 TAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 627 ~~~eerl~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
.++.++..+++++...+.++.+|+.++...+
T Consensus 81 -~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 81 -TLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.73 E-value=0.76 Score=45.28 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.+|||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.55 E-value=0.65 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
-+|.|+||.++|||+|...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47889999999999999999854
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.53 E-value=0.98 Score=41.94 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
.+..|+|+.++|||+||..|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 477899999999999999974
No 479
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=80.51 E-value=36 Score=31.44 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---
Q 005055 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL--- 633 (716)
Q Consensus 557 ~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~r~~~~eerl--- 633 (716)
.-..++.++++.++.-+.+-.+-...+.....++=.|.++..+-|+..|++... ..+.+-+++.|+..++.||
T Consensus 20 ~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~s----A~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 20 VSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDT----AKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHHHHHHHhcC
Confidence 345677888888888777777777778888888888999999999999888654 4445555666666666665
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005055 634 -------AAAREQALSAQEEVEEWKRKYGVAV 658 (716)
Q Consensus 634 -------~~~~~ql~~ak~E~~~w~~kY~~~~ 658 (716)
+.++...++++.|...-+++-+.+.
T Consensus 96 ~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 96 DPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888885555544444
No 480
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.48 E-value=0.68 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=15.7
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|.|+|+.+|||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999998643
No 481
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.33 E-value=0.92 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 482
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.18 E-value=0.94 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCCCCc
Q 005055 73 VVSVCGRARQGKSFILNQLLGRSSG 97 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~~~g 97 (716)
+|.|+||.++|||+|...|+..-+|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC
Confidence 6889999999999999999977543
No 483
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.14 E-value=0.89 Score=44.23 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.|.|+|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999643
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.93 E-value=0.89 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHhhC
Q 005055 70 PIGVVSVCGRARQGKSFILNQLLG 93 (716)
Q Consensus 70 pV~VVsV~G~~rtGKS~LlN~llg 93 (716)
+-.+|+|+|+.++||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999875
No 485
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.80 E-value=23 Score=29.38 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005055 586 TVDSLKNEISDWKRKYDQ 603 (716)
Q Consensus 586 ~le~~k~e~~e~~r~y~~ 603 (716)
.....+.++..++|+++.
T Consensus 35 ~~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKG 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 333334444444444433
No 486
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.66 E-value=0.94 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|.|+|+.++||||+++.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 487
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.44 E-value=18 Score=30.66 Aligned_cols=14 Identities=21% Similarity=0.276 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHHH
Q 005055 522 SIEDNMKLLKKQLE 535 (716)
Q Consensus 522 s~e~e~~~l~k~~e 535 (716)
.++.++..++..++
T Consensus 18 ~~eeel~~lke~l~ 31 (89)
T 3bas_A 18 EQLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 488
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.38 E-value=0.68 Score=53.75 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.4
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+|+|+|+.++|||||+|.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 78999999999999999765
No 489
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.35 E-value=0.92 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHhhCC
Q 005055 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 69 ~pV~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.++++|+|.|+.|+|||+|++.++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 45677778999999999999998754
No 490
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.00 E-value=17 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 005055 586 TVDSLKNEISDWKRKY 601 (716)
Q Consensus 586 ~le~~k~e~~e~~r~y 601 (716)
+++++++++.++++++
T Consensus 104 k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 104 KAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 491
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=78.70 E-value=1 Score=41.78 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.4
Q ss_pred EEeeCCCCCChhHHHHHhhCC
Q 005055 74 VSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 74 VsV~G~~rtGKS~LlN~llg~ 94 (716)
|-|.|+.|+|||+|++.++..
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999998754
No 492
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.60 E-value=1.1 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEeeCCCCCChhHHHHHhhCC
Q 005055 72 GVVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~llg~ 94 (716)
.+|+|.|+.++||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 493
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.55 E-value=0.72 Score=46.94 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHhhCC
Q 005055 73 VVSVCGRARQGKSFILNQLLGR 94 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~llg~ 94 (716)
+|+|+|+.++||||+++.|.+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 494
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.47 E-value=0.98 Score=44.40 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
++.|+|+.++|||+|+.+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
No 495
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=78.34 E-value=1.1 Score=43.79 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+|.|+|+.+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.25 E-value=1 Score=47.98 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHhh
Q 005055 73 VVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 73 VVsV~G~~rtGKS~LlN~ll 92 (716)
+|.|+|+.+||||+|...|+
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
No 497
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=78.07 E-value=0.66 Score=51.25 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHhh
Q 005055 25 SSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 25 ~~~~~~~~~~~m~~~~~pi~LI~~d~~~~l~v~~eAl~~L~~i~~pV~VVsV~G~~rtGKS~LlN~ll 92 (716)
+++--|.++.+-..+.+|+.+-..++ ++-..-..++..|..-+. ++-|.|+.|||||+++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~p~~~~~Ln~-~Q~~av~~~~~~i~~~~~---~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 3 SSHHHHHHSSGLVPRGSHMTFDDLTE-GQKNAFNIVMKAIKEKKH---HVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp ------------------CCSSCCCH-HHHHHHHHHHHHHHSSSC---EEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCCccCCCccccCCCccccCCH-HHHHHHHHHHHHHhcCCC---EEEEEeCCCCCHHHHHHHHH
No 498
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.02 E-value=1.1 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred EEEEeeCCCCCChhHHHHHhh
Q 005055 72 GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 72 ~VVsV~G~~rtGKS~LlN~ll 92 (716)
+++.|+|+.++|||+|++.|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
No 499
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.98 E-value=1.6 Score=41.74 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCE--EEEEeeCCCCCChhHHHHHhh
Q 005055 58 PEAVAALQLVKEPI--GVVSVCGRARQGKSFILNQLL 92 (716)
Q Consensus 58 ~eAl~~L~~i~~pV--~VVsV~G~~rtGKS~LlN~ll 92 (716)
..+.+++.....+. ..|-|.|+.|||||+|+..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 39 RFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp HHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHH
No 500
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.67 E-value=30 Score=28.92 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005055 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (716)
Q Consensus 550 e~i~dlk~~~e~~~~~~~~l~~k~~~le~~~~~~~~~le~~k~e~~e~~r~y~~~i~~~k~~~~~~~~~i~~l~~ 624 (716)
+.+.+|..++.+.-..|+-|+.++.+|.++-..+..+.+.++.....+.+..+++=+++..-.+++.+-+..+..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Done!