Query 005056
Match_columns 716
No_of_seqs 376 out of 2667
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 17:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06126 hypothetical protein; 100.0 6.2E-81 1.4E-85 715.0 56.6 534 39-700 3-544 (545)
2 PRK08132 FAD-dependent oxidore 100.0 1.1E-64 2.4E-69 580.4 55.1 522 42-704 22-546 (547)
3 PRK06184 hypothetical protein; 100.0 1.2E-62 2.6E-67 558.2 51.6 489 42-702 2-494 (502)
4 PRK08244 hypothetical protein; 100.0 5.8E-60 1.3E-64 535.2 49.1 488 43-704 2-491 (493)
5 PRK06183 mhpA 3-(3-hydroxyphen 100.0 5.2E-55 1.1E-59 499.2 54.9 523 41-703 8-532 (538)
6 PRK07190 hypothetical protein; 100.0 1.6E-54 3.6E-59 486.2 49.5 341 40-428 2-344 (487)
7 PRK08294 phenol 2-monooxygenas 100.0 3.6E-53 7.9E-58 488.2 59.4 553 41-703 30-631 (634)
8 PRK06834 hypothetical protein; 100.0 5.8E-53 1.3E-57 474.2 50.5 332 42-428 2-334 (488)
9 PF01494 FAD_binding_3: FAD bi 100.0 2.6E-44 5.6E-49 389.6 29.3 350 43-423 1-355 (356)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.2E-41 2.7E-46 373.6 35.6 341 43-428 2-347 (387)
11 PRK08013 oxidoreductase; Provi 100.0 1E-41 2.3E-46 376.1 32.2 341 42-429 2-355 (400)
12 PRK08243 4-hydroxybenzoate 3-m 100.0 5.1E-40 1.1E-44 361.8 36.1 342 43-431 2-350 (392)
13 PRK08850 2-octaprenyl-6-methox 100.0 2.4E-40 5.1E-45 366.2 32.0 343 42-430 3-356 (405)
14 TIGR01989 COQ6 Ubiquinone bios 100.0 5.4E-40 1.2E-44 366.2 33.6 343 44-430 1-407 (437)
15 PRK07045 putative monooxygenas 100.0 4.3E-39 9.3E-44 354.2 35.4 346 40-429 2-356 (388)
16 PRK06617 2-octaprenyl-6-methox 100.0 3.8E-39 8.3E-44 352.5 34.6 328 44-431 2-338 (374)
17 PRK08849 2-octaprenyl-3-methyl 100.0 3E-39 6.5E-44 354.7 33.6 336 43-428 3-346 (384)
18 PRK05714 2-octaprenyl-3-methyl 100.0 6E-39 1.3E-43 355.1 32.5 343 43-431 2-360 (405)
19 PRK07494 2-octaprenyl-6-methox 100.0 5E-39 1.1E-43 353.8 31.5 341 38-425 2-346 (388)
20 PRK07364 2-octaprenyl-6-methox 100.0 1.4E-38 3E-43 353.4 34.7 347 42-431 17-369 (415)
21 PRK08773 2-octaprenyl-3-methyl 100.0 2.4E-38 5.2E-43 348.8 33.2 335 41-422 4-348 (392)
22 PRK07333 2-octaprenyl-6-methox 100.0 3.1E-38 6.6E-43 349.3 33.8 341 44-429 2-353 (403)
23 PRK06996 hypothetical protein; 100.0 7.1E-38 1.5E-42 345.4 34.0 344 39-431 7-360 (398)
24 TIGR01984 UbiH 2-polyprenyl-6- 100.0 8.9E-38 1.9E-42 343.1 32.8 338 45-431 1-348 (382)
25 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.9E-37 4.1E-42 341.6 34.2 335 41-425 3-350 (391)
26 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 7.5E-37 1.6E-41 336.0 34.5 339 43-432 2-351 (390)
27 PRK07608 ubiquinone biosynthes 100.0 4.7E-37 1E-41 338.1 32.4 341 42-431 4-354 (388)
28 PRK09126 hypothetical protein; 100.0 3.4E-37 7.4E-42 339.7 29.9 340 42-429 2-353 (392)
29 PRK06185 hypothetical protein; 100.0 2E-36 4.4E-41 335.2 36.2 345 39-429 2-355 (407)
30 TIGR01988 Ubi-OHases Ubiquinon 100.0 7.2E-37 1.6E-41 336.1 32.1 340 45-431 1-351 (385)
31 PRK06475 salicylate hydroxylas 100.0 1.1E-36 2.4E-41 336.3 32.4 340 44-425 3-354 (400)
32 PRK07588 hypothetical protein; 100.0 2.5E-36 5.5E-41 332.6 35.1 335 44-426 1-344 (391)
33 PRK05732 2-octaprenyl-6-methox 100.0 1.3E-36 2.9E-41 335.3 31.6 344 41-431 1-357 (395)
34 PRK06753 hypothetical protein; 100.0 7.3E-36 1.6E-40 326.9 32.4 326 44-429 1-336 (373)
35 PRK07538 hypothetical protein; 100.0 1.4E-35 3E-40 328.9 35.0 342 44-426 1-361 (413)
36 PRK08163 salicylate hydroxylas 100.0 1.9E-35 4.2E-40 326.2 32.8 341 42-430 3-355 (396)
37 PRK06847 hypothetical protein; 100.0 1.1E-34 2.4E-39 317.7 37.0 335 43-430 4-350 (375)
38 PRK05868 hypothetical protein; 100.0 7.5E-35 1.6E-39 317.9 34.7 335 44-424 2-345 (372)
39 PRK07236 hypothetical protein; 100.0 1.6E-34 3.5E-39 317.6 31.1 335 41-429 4-373 (386)
40 TIGR03219 salicylate_mono sali 100.0 3.9E-34 8.4E-39 317.5 28.6 344 45-431 2-373 (414)
41 PLN02927 antheraxanthin epoxid 100.0 4.3E-32 9.3E-37 308.3 33.8 353 41-437 79-452 (668)
42 PLN02985 squalene monooxygenas 100.0 2.7E-32 5.8E-37 307.6 29.9 344 40-431 40-401 (514)
43 KOG2614 Kynurenine 3-monooxyge 100.0 2.8E-32 6.1E-37 283.8 22.7 337 43-429 2-354 (420)
44 PTZ00367 squalene epoxidase; P 100.0 6.7E-31 1.4E-35 297.6 34.8 342 42-431 32-421 (567)
45 TIGR02032 GG-red-SF geranylger 100.0 9.5E-28 2.1E-32 253.4 29.5 291 44-393 1-295 (295)
46 PLN00093 geranylgeranyl diphos 100.0 9E-27 2E-31 258.9 37.8 326 34-417 30-370 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 5.7E-27 1.2E-31 257.8 35.4 318 44-421 1-325 (388)
48 PRK08255 salicylyl-CoA 5-hydro 100.0 5.1E-28 1.1E-32 285.8 27.8 325 45-440 2-348 (765)
49 PRK11445 putative oxidoreducta 99.9 2E-26 4.4E-31 249.8 25.5 311 44-417 2-317 (351)
50 TIGR02028 ChlP geranylgeranyl 99.9 5.6E-25 1.2E-29 242.2 36.7 312 44-415 1-329 (398)
51 COG0644 FixC Dehydrogenases (f 99.9 2.3E-23 4.9E-28 229.5 33.1 317 42-424 2-332 (396)
52 KOG3855 Monooxygenase involved 99.9 2.7E-23 5.8E-28 214.9 21.3 360 11-416 8-430 (481)
53 TIGR01790 carotene-cycl lycope 99.9 2.8E-21 6E-26 212.8 37.2 305 45-418 1-320 (388)
54 PRK10015 oxidoreductase; Provi 99.9 6.4E-22 1.4E-26 219.7 30.6 332 41-415 3-354 (429)
55 PRK10157 putative oxidoreducta 99.9 1E-20 2.2E-25 210.3 32.6 331 41-416 3-355 (428)
56 PLN02697 lycopene epsilon cycl 99.9 1.3E-19 2.9E-24 203.5 36.5 310 41-417 106-440 (529)
57 TIGR01789 lycopene_cycl lycope 99.9 7.2E-20 1.6E-24 199.2 26.1 298 45-418 1-308 (370)
58 PLN02463 lycopene beta cyclase 99.8 9E-19 1.9E-23 194.1 28.6 292 41-399 26-334 (447)
59 PF04820 Trp_halogenase: Trypt 99.8 5.8E-18 1.3E-22 188.7 26.6 334 45-430 1-384 (454)
60 KOG1298 Squalene monooxygenase 99.8 6.6E-18 1.4E-22 173.2 24.0 350 31-431 33-401 (509)
61 PF05834 Lycopene_cycl: Lycope 99.8 8.7E-17 1.9E-21 175.7 28.8 281 45-395 1-290 (374)
62 PRK04176 ribulose-1,5-biphosph 99.4 3.3E-12 7.1E-17 131.9 13.4 144 41-243 23-179 (257)
63 TIGR00292 thiazole biosynthesi 99.3 1.7E-11 3.6E-16 126.2 13.5 144 41-243 19-176 (254)
64 PF08491 SE: Squalene epoxidas 99.3 1.4E-10 3E-15 117.9 16.3 189 226-431 2-205 (276)
65 TIGR01377 soxA_mon sarcosine o 99.2 3.7E-09 8E-14 116.1 23.2 176 44-248 1-212 (380)
66 COG2081 Predicted flavoprotein 99.2 4E-10 8.6E-15 118.7 14.6 158 41-238 1-168 (408)
67 PRK13369 glycerol-3-phosphate 99.1 1.6E-08 3.5E-13 115.1 28.2 73 151-245 151-225 (502)
68 PRK12266 glpD glycerol-3-phosp 99.1 2.4E-08 5.3E-13 113.6 28.2 74 151-245 151-226 (508)
69 TIGR01320 mal_quin_oxido malat 99.1 4E-09 8.8E-14 118.8 20.6 120 150-293 173-295 (483)
70 TIGR01373 soxB sarcosine oxida 99.1 8.5E-09 1.8E-13 114.4 22.1 36 41-76 28-65 (407)
71 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.2E-09 2.5E-14 105.6 12.9 143 41-242 28-183 (262)
72 PF01946 Thi4: Thi4 family; PD 99.1 2.9E-09 6.3E-14 103.7 14.9 141 41-240 15-168 (230)
73 PF03486 HI0933_like: HI0933-l 99.0 1.5E-09 3.3E-14 119.0 13.3 141 44-238 1-167 (409)
74 PRK12409 D-amino acid dehydrog 99.0 4E-08 8.6E-13 109.2 24.4 72 153-245 195-267 (410)
75 PRK11728 hydroxyglutarate oxid 99.0 8.3E-09 1.8E-13 113.9 18.5 69 151-246 145-214 (393)
76 PRK11259 solA N-methyltryptoph 99.0 2.9E-09 6.4E-14 116.7 14.5 36 42-77 2-37 (376)
77 PRK05257 malate:quinone oxidor 99.0 8E-09 1.7E-13 116.5 17.7 75 151-246 179-256 (494)
78 PF01266 DAO: FAD dependent ox 99.0 4E-09 8.7E-14 114.1 14.7 174 45-246 1-213 (358)
79 COG0579 Predicted dehydrogenas 99.0 4.9E-09 1.1E-13 114.0 14.5 181 42-247 2-222 (429)
80 PTZ00383 malate:quinone oxidor 99.0 2.3E-08 4.9E-13 112.5 18.4 71 150-245 206-282 (497)
81 PF13738 Pyr_redox_3: Pyridine 98.9 4.8E-09 1E-13 104.5 11.2 138 47-238 1-139 (203)
82 PRK13339 malate:quinone oxidor 98.9 4.3E-08 9.2E-13 110.0 19.4 77 150-247 179-258 (497)
83 PLN02172 flavin-containing mon 98.9 2.4E-08 5.1E-13 111.9 16.9 167 41-238 8-174 (461)
84 PRK07233 hypothetical protein; 98.9 5.3E-07 1.1E-11 100.8 27.3 59 45-104 1-74 (434)
85 PF12831 FAD_oxidored: FAD dep 98.9 1.4E-09 3E-14 121.2 6.4 154 45-247 1-159 (428)
86 PRK00711 D-amino acid dehydrog 98.9 1.9E-07 4.1E-12 103.9 22.9 69 152-246 198-267 (416)
87 PRK12416 protoporphyrinogen ox 98.9 1.8E-07 3.8E-12 105.7 22.9 60 45-105 3-83 (463)
88 COG0578 GlpA Glycerol-3-phosph 98.9 3.1E-07 6.8E-12 102.1 24.0 185 41-246 10-235 (532)
89 PRK11101 glpA sn-glycerol-3-ph 98.9 4.8E-08 1E-12 112.2 18.3 76 150-246 144-221 (546)
90 KOG2415 Electron transfer flav 98.9 2.4E-07 5.2E-12 97.1 20.2 57 361-417 386-446 (621)
91 PLN02464 glycerol-3-phosphate 98.8 4.1E-07 9E-12 105.8 24.2 73 151-244 228-304 (627)
92 PLN02612 phytoene desaturase 98.8 3.6E-06 7.8E-11 97.1 31.1 64 41-105 91-170 (567)
93 PRK05192 tRNA uridine 5-carbox 98.8 6.5E-08 1.4E-12 109.6 16.3 150 41-237 2-157 (618)
94 PRK01747 mnmC bifunctional tRN 98.8 4.4E-08 9.6E-13 115.3 14.6 35 43-77 260-294 (662)
95 PLN02661 Putative thiazole syn 98.8 1.1E-07 2.4E-12 100.9 15.5 39 40-78 89-128 (357)
96 PRK08274 tricarballylate dehyd 98.8 4.1E-08 8.9E-13 110.9 12.8 37 41-77 2-38 (466)
97 PRK11883 protoporphyrinogen ox 98.8 1.4E-06 3.1E-11 97.9 24.7 59 45-104 2-77 (451)
98 TIGR01292 TRX_reduct thioredox 98.7 8.6E-08 1.9E-12 101.4 13.0 112 44-237 1-112 (300)
99 PRK06481 fumarate reductase fl 98.7 2.9E-07 6.2E-12 104.9 17.8 38 41-78 59-96 (506)
100 TIGR00275 flavoprotein, HI0933 98.7 1.1E-07 2.4E-12 105.0 13.6 149 47-237 1-160 (400)
101 TIGR03329 Phn_aa_oxid putative 98.7 2.8E-07 6.1E-12 103.9 15.8 38 40-77 21-60 (460)
102 PRK07804 L-aspartate oxidase; 98.7 4.8E-07 1E-11 103.8 17.7 38 41-78 14-51 (541)
103 COG2072 TrkA Predicted flavopr 98.7 1.8E-07 4E-12 104.3 13.7 40 39-78 4-44 (443)
104 PRK06854 adenylylsulfate reduc 98.7 6.4E-07 1.4E-11 104.1 18.3 38 41-78 9-48 (608)
105 TIGR00562 proto_IX_ox protopor 98.7 4.9E-06 1.1E-10 94.0 25.1 61 44-105 3-82 (462)
106 PRK15317 alkyl hydroperoxide r 98.7 1.9E-07 4.2E-12 106.7 13.5 114 41-237 209-322 (517)
107 PRK07121 hypothetical protein; 98.7 2.4E-07 5.2E-12 105.3 14.1 38 41-78 18-55 (492)
108 KOG2820 FAD-dependent oxidored 98.6 1.3E-06 2.8E-11 89.8 17.5 48 40-87 4-51 (399)
109 PLN02268 probable polyamine ox 98.6 6.5E-06 1.4E-10 92.2 25.1 35 44-78 1-35 (435)
110 PLN00128 Succinate dehydrogena 98.6 1.2E-06 2.6E-11 102.0 19.2 37 42-78 49-85 (635)
111 TIGR02731 phytoene_desat phyto 98.6 1.8E-05 3.9E-10 89.2 28.0 60 45-105 1-76 (453)
112 TIGR01812 sdhA_frdA_Gneg succi 98.6 8.8E-07 1.9E-11 102.5 17.7 66 155-241 129-195 (566)
113 PRK09231 fumarate reductase fl 98.6 1.2E-06 2.5E-11 101.5 18.2 38 41-78 2-41 (582)
114 PRK06175 L-aspartate oxidase; 98.6 1.4E-06 3E-11 97.3 18.3 36 42-78 3-38 (433)
115 TIGR00551 nadB L-aspartate oxi 98.6 9.2E-07 2E-11 100.4 16.9 65 154-241 127-193 (488)
116 KOG1399 Flavin-containing mono 98.6 2.6E-07 5.7E-12 101.9 12.0 148 41-236 4-152 (448)
117 PF00743 FMO-like: Flavin-bind 98.6 2.6E-07 5.6E-12 105.1 12.3 144 44-238 2-151 (531)
118 PRK06452 sdhA succinate dehydr 98.6 1.6E-06 3.4E-11 100.1 18.9 39 40-78 2-40 (566)
119 TIGR03364 HpnW_proposed FAD de 98.6 8.9E-07 1.9E-11 96.7 16.0 34 44-77 1-34 (365)
120 TIGR01813 flavo_cyto_c flavocy 98.6 2.7E-07 5.9E-12 103.5 12.2 34 45-78 1-35 (439)
121 PRK07573 sdhA succinate dehydr 98.6 1.9E-06 4.2E-11 100.5 19.3 38 41-78 33-70 (640)
122 PLN02676 polyamine oxidase 98.6 5.1E-06 1.1E-10 94.1 22.0 37 42-78 25-62 (487)
123 TIGR03140 AhpF alkyl hydropero 98.6 4.1E-07 8.9E-12 103.9 13.1 114 41-237 210-323 (515)
124 PF00890 FAD_binding_2: FAD bi 98.6 2.6E-06 5.7E-11 94.8 19.1 65 153-238 139-204 (417)
125 COG1232 HemY Protoporphyrinoge 98.6 4.4E-05 9.5E-10 84.1 28.0 63 45-108 2-81 (444)
126 PRK07843 3-ketosteroid-delta-1 98.6 9.9E-07 2.1E-11 101.6 15.7 65 39-104 3-69 (557)
127 PRK05945 sdhA succinate dehydr 98.6 1.6E-06 3.4E-11 100.4 17.3 37 42-78 2-40 (575)
128 PLN02576 protoporphyrinogen ox 98.5 3.3E-05 7.1E-10 88.1 27.6 38 41-78 10-48 (496)
129 COG0492 TrxB Thioredoxin reduc 98.5 5.7E-07 1.2E-11 94.9 11.9 35 42-76 2-37 (305)
130 PTZ00139 Succinate dehydrogena 98.5 2.8E-06 6E-11 98.9 18.4 37 42-78 28-64 (617)
131 PRK06069 sdhA succinate dehydr 98.5 2.1E-06 4.5E-11 99.5 17.2 40 39-78 1-43 (577)
132 PRK09077 L-aspartate oxidase; 98.5 2.3E-06 5E-11 98.2 17.2 40 38-78 3-42 (536)
133 PRK07057 sdhA succinate dehydr 98.5 3.5E-06 7.5E-11 97.7 18.8 39 39-77 8-46 (591)
134 COG0665 DadA Glycine/D-amino a 98.5 1.5E-05 3.2E-10 87.7 22.6 38 41-78 2-39 (387)
135 PRK09078 sdhA succinate dehydr 98.5 4E-06 8.6E-11 97.4 18.4 37 41-77 10-46 (598)
136 TIGR01176 fum_red_Fp fumarate 98.5 4E-06 8.6E-11 96.9 18.3 37 42-78 2-40 (580)
137 PF01134 GIDA: Glucose inhibit 98.5 2.4E-06 5.2E-11 92.2 15.3 144 45-235 1-150 (392)
138 PRK08641 sdhA succinate dehydr 98.5 5.5E-06 1.2E-10 96.0 18.8 37 42-78 2-38 (589)
139 PRK08205 sdhA succinate dehydr 98.5 5.8E-06 1.3E-10 95.8 18.6 37 41-78 3-39 (583)
140 PRK05335 tRNA (uracil-5-)-meth 98.4 7.6E-07 1.7E-11 96.9 10.4 115 44-201 3-126 (436)
141 PRK06263 sdhA succinate dehydr 98.4 5.8E-06 1.3E-10 95.1 18.2 36 41-77 5-40 (543)
142 PRK08275 putative oxidoreducta 98.4 5.5E-06 1.2E-10 95.5 17.9 38 41-78 7-46 (554)
143 PRK07803 sdhA succinate dehydr 98.4 6.1E-06 1.3E-10 96.3 18.2 39 40-78 5-43 (626)
144 PLN02328 lysine-specific histo 98.4 2.7E-05 5.8E-10 91.7 23.2 38 41-78 236-273 (808)
145 KOG2853 Possible oxidoreductas 98.4 1.8E-05 3.9E-10 81.3 18.8 39 42-80 85-127 (509)
146 TIGR03143 AhpF_homolog putativ 98.4 1.7E-06 3.7E-11 99.7 13.2 34 43-76 4-37 (555)
147 PF06039 Mqo: Malate:quinone o 98.4 7.4E-06 1.6E-10 88.6 16.8 75 151-246 177-254 (488)
148 PRK06370 mercuric reductase; V 98.4 1.1E-05 2.4E-10 91.2 18.5 37 40-76 2-38 (463)
149 PRK08626 fumarate reductase fl 98.4 7.1E-06 1.5E-10 96.0 17.3 40 39-78 1-40 (657)
150 PRK08401 L-aspartate oxidase; 98.4 6.9E-06 1.5E-10 92.7 16.5 34 44-77 2-35 (466)
151 PRK08071 L-aspartate oxidase; 98.4 8.3E-06 1.8E-10 93.0 16.8 36 42-78 2-37 (510)
152 PRK08958 sdhA succinate dehydr 98.4 1.4E-05 3.1E-10 92.5 18.5 37 42-78 6-42 (588)
153 PRK06134 putative FAD-binding 98.3 4.7E-06 1E-10 96.6 14.3 39 40-78 9-47 (581)
154 PLN02815 L-aspartate oxidase 98.3 1.3E-05 2.8E-10 92.6 17.6 37 41-78 27-63 (594)
155 COG3380 Predicted NAD/FAD-depe 98.3 2.8E-06 6.1E-11 84.9 10.2 52 45-96 3-66 (331)
156 PF00070 Pyr_redox: Pyridine n 98.3 7.1E-06 1.5E-10 68.7 11.4 34 45-78 1-34 (80)
157 COG1231 Monoamine oxidase [Ami 98.3 4.6E-06 9.9E-11 89.9 12.4 38 41-78 5-42 (450)
158 PRK12837 3-ketosteroid-delta-1 98.3 2.7E-06 5.9E-11 97.1 11.2 36 42-78 6-41 (513)
159 PRK12842 putative succinate de 98.3 4.3E-06 9.2E-11 96.9 12.7 38 41-78 7-44 (574)
160 PLN02568 polyamine oxidase 98.3 8.9E-06 1.9E-10 93.0 14.8 40 39-78 1-45 (539)
161 PF07992 Pyr_redox_2: Pyridine 98.3 4E-06 8.7E-11 83.1 10.5 33 45-77 1-33 (201)
162 TIGR00136 gidA glucose-inhibit 98.3 1.2E-05 2.6E-10 91.3 14.9 146 44-237 1-154 (617)
163 PLN02487 zeta-carotene desatur 98.3 0.00029 6.3E-09 80.8 26.1 63 43-106 75-153 (569)
164 PRK05249 soluble pyridine nucl 98.3 1.5E-05 3.2E-10 90.0 15.7 40 39-78 1-40 (461)
165 PRK10262 thioredoxin reductase 98.3 1.6E-05 3.6E-10 85.2 15.2 35 41-75 4-38 (321)
166 PLN02529 lysine-specific histo 98.3 0.00014 3.1E-09 85.2 23.9 38 41-78 158-195 (738)
167 KOG3855 Monooxygenase involved 98.3 3.7E-08 8E-13 103.4 -5.1 185 344-582 232-416 (481)
168 PRK07395 L-aspartate oxidase; 98.2 1.6E-05 3.5E-10 91.4 15.3 39 39-78 5-43 (553)
169 PRK09897 hypothetical protein; 98.2 6.7E-06 1.4E-10 93.3 11.9 35 44-78 2-38 (534)
170 PRK12844 3-ketosteroid-delta-1 98.2 8.3E-06 1.8E-10 94.0 12.8 37 42-78 5-41 (557)
171 PF13450 NAD_binding_8: NAD(P) 98.2 1.2E-06 2.7E-11 70.8 4.1 32 48-79 1-32 (68)
172 PLN03000 amine oxidase 98.2 0.00015 3.2E-09 85.6 22.8 37 42-78 183-219 (881)
173 PRK06116 glutathione reductase 98.2 2.3E-05 5E-10 88.2 15.8 34 42-75 3-36 (450)
174 PRK14694 putative mercuric red 98.2 2.9E-05 6.3E-10 87.8 16.2 38 39-76 2-39 (468)
175 KOG0042 Glycerol-3-phosphate d 98.2 1.3E-05 2.9E-10 87.0 12.4 75 5-79 19-103 (680)
176 PRK06467 dihydrolipoamide dehy 98.2 2.5E-05 5.4E-10 88.3 15.3 36 41-76 2-37 (471)
177 TIGR01424 gluta_reduc_2 glutat 98.2 1.2E-05 2.6E-10 90.4 12.5 33 43-75 2-34 (446)
178 TIGR01811 sdhA_Bsu succinate d 98.2 3.5E-05 7.5E-10 89.6 16.4 32 46-77 1-32 (603)
179 PRK07512 L-aspartate oxidase; 98.2 2.7E-05 5.8E-10 88.9 15.1 37 39-77 5-41 (513)
180 PRK06416 dihydrolipoamide dehy 98.2 2.7E-05 5.9E-10 87.9 15.0 35 42-76 3-37 (462)
181 PRK12839 hypothetical protein; 98.2 1E-05 2.3E-10 93.3 11.6 40 39-78 4-43 (572)
182 PRK05976 dihydrolipoamide dehy 98.2 3.2E-05 6.9E-10 87.6 15.3 34 42-75 3-36 (472)
183 PLN02507 glutathione reductase 98.1 2.4E-05 5.1E-10 89.1 14.0 35 41-75 23-57 (499)
184 TIGR01421 gluta_reduc_1 glutat 98.1 2.5E-05 5.4E-10 87.8 13.8 33 43-75 2-34 (450)
185 PRK12834 putative FAD-binding 98.1 5.2E-05 1.1E-09 87.4 16.6 36 41-76 2-37 (549)
186 PRK07251 pyridine nucleotide-d 98.1 3.2E-05 6.9E-10 86.7 14.0 36 42-77 2-37 (438)
187 KOG1335 Dihydrolipoamide dehyd 98.1 0.0001 2.3E-09 77.1 16.2 58 189-249 267-325 (506)
188 PRK12835 3-ketosteroid-delta-1 98.1 6.1E-05 1.3E-09 87.3 16.2 38 41-78 9-46 (584)
189 PRK05329 anaerobic glycerol-3- 98.1 0.00013 2.8E-09 80.7 18.0 35 43-77 2-36 (422)
190 PRK06327 dihydrolipoamide dehy 98.1 4.9E-05 1.1E-09 86.1 15.1 33 42-74 3-35 (475)
191 PRK12843 putative FAD-binding 98.1 3.3E-05 7.2E-10 89.5 13.4 38 41-78 14-51 (578)
192 PRK06115 dihydrolipoamide dehy 98.1 5.2E-05 1.1E-09 85.6 14.7 35 42-76 2-36 (466)
193 PTZ00058 glutathione reductase 98.1 2.2E-05 4.7E-10 90.1 11.5 37 39-75 44-80 (561)
194 TIGR02462 pyranose_ox pyranose 98.0 0.00013 2.8E-09 82.9 17.2 36 44-79 1-36 (544)
195 PRK12845 3-ketosteroid-delta-1 98.0 5.2E-05 1.1E-09 87.3 14.2 37 41-78 14-50 (564)
196 PF13434 K_oxygenase: L-lysine 98.0 3.1E-05 6.7E-10 83.5 11.4 150 43-236 2-158 (341)
197 TIGR02485 CobZ_N-term precorri 98.0 3.5E-05 7.6E-10 86.2 12.1 64 155-241 123-187 (432)
198 PRK13977 myosin-cross-reactive 98.0 0.00017 3.6E-09 81.6 17.1 37 42-78 21-61 (576)
199 TIGR02061 aprA adenosine phosp 98.0 4.6E-05 1E-09 88.2 11.7 34 45-78 1-38 (614)
200 COG1233 Phytoene dehydrogenase 97.9 8.2E-06 1.8E-10 92.5 4.9 37 42-78 2-38 (487)
201 PRK13748 putative mercuric red 97.9 0.00017 3.7E-09 83.6 15.9 34 42-75 97-130 (561)
202 TIGR01350 lipoamide_DH dihydro 97.9 8.8E-05 1.9E-09 83.8 12.9 31 44-74 2-32 (461)
203 PTZ00052 thioredoxin reductase 97.9 4E-05 8.8E-10 87.2 10.2 33 43-75 5-37 (499)
204 PRK04965 NADH:flavorubredoxin 97.9 0.00014 3.1E-09 79.8 14.1 98 44-237 142-239 (377)
205 PTZ00306 NADH-dependent fumara 97.9 5.2E-05 1.1E-09 94.5 11.2 39 40-78 406-444 (1167)
206 KOG2844 Dimethylglycine dehydr 97.9 0.00027 5.9E-09 78.9 14.7 179 40-245 36-252 (856)
207 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 7.8E-05 1.7E-09 81.9 10.5 35 44-78 1-35 (433)
208 PRK14727 putative mercuric red 97.8 0.0004 8.7E-09 78.8 16.5 37 41-77 14-50 (479)
209 COG0029 NadB Aspartate oxidase 97.8 0.00024 5.3E-09 77.4 13.8 159 45-239 9-198 (518)
210 PRK13800 putative oxidoreducta 97.8 0.00034 7.4E-09 85.2 16.9 37 41-77 11-47 (897)
211 KOG2665 Predicted FAD-dependen 97.8 0.00013 2.8E-09 74.5 10.8 181 40-246 45-267 (453)
212 PRK09564 coenzyme A disulfide 97.8 0.0001 2.2E-09 82.8 11.4 34 45-78 2-37 (444)
213 PRK13512 coenzyme A disulfide 97.8 0.00013 2.9E-09 81.7 12.1 35 45-79 3-39 (438)
214 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.00028 6E-09 78.5 14.2 113 42-250 172-284 (454)
215 TIGR01372 soxA sarcosine oxida 97.8 0.00035 7.7E-09 85.9 16.4 37 42-78 162-198 (985)
216 PRK12779 putative bifunctional 97.8 4.8E-05 1E-09 92.3 8.7 36 42-77 305-340 (944)
217 COG1053 SdhA Succinate dehydro 97.8 0.00033 7.1E-09 80.1 14.3 41 39-79 2-42 (562)
218 PRK07208 hypothetical protein; 97.8 2.9E-05 6.3E-10 88.1 5.6 38 41-78 2-39 (479)
219 PF13454 NAD_binding_9: FAD-NA 97.7 0.00013 2.7E-09 69.6 9.0 31 47-77 1-36 (156)
220 PRK06115 dihydrolipoamide dehy 97.7 0.00042 9E-09 78.4 14.5 103 43-237 174-276 (466)
221 PRK08010 pyridine nucleotide-d 97.7 3.6E-05 7.8E-10 86.4 5.2 35 42-76 2-36 (441)
222 PTZ00318 NADH dehydrogenase-li 97.7 0.00023 5.1E-09 79.4 11.7 40 39-78 6-45 (424)
223 TIGR01350 lipoamide_DH dihydro 97.7 0.00045 9.7E-09 78.0 14.1 99 44-237 171-269 (461)
224 TIGR01438 TGR thioredoxin and 97.7 0.00037 8E-09 79.0 13.1 33 43-75 2-34 (484)
225 PRK07845 flavoprotein disulfid 97.7 0.00039 8.4E-09 78.6 13.2 32 45-76 3-34 (466)
226 PRK09754 phenylpropionate diox 97.7 0.00053 1.1E-08 75.9 13.8 98 44-238 145-242 (396)
227 PRK05249 soluble pyridine nucl 97.7 0.00045 9.7E-09 78.0 13.5 98 43-237 175-272 (461)
228 PRK09754 phenylpropionate diox 97.6 0.00028 6.1E-09 78.0 11.2 37 42-78 2-40 (396)
229 PRK06416 dihydrolipoamide dehy 97.6 0.0007 1.5E-08 76.5 14.1 100 44-237 173-272 (462)
230 PRK06912 acoL dihydrolipoamide 97.6 0.0012 2.7E-08 74.4 15.6 32 45-76 2-33 (458)
231 TIGR02053 MerA mercuric reduct 97.6 0.00074 1.6E-08 76.3 13.8 100 44-237 167-266 (463)
232 PRK06327 dihydrolipoamide dehy 97.6 0.0011 2.4E-08 75.2 15.0 101 44-237 184-284 (475)
233 TIGR02733 desat_CrtD C-3',4' d 97.6 6.7E-05 1.5E-09 85.5 5.1 35 44-78 2-36 (492)
234 PRK06467 dihydrolipoamide dehy 97.6 0.00096 2.1E-08 75.5 14.4 34 44-77 175-208 (471)
235 PRK07818 dihydrolipoamide dehy 97.6 0.001 2.2E-08 75.3 14.5 101 44-237 173-273 (466)
236 PLN02546 glutathione reductase 97.5 0.00055 1.2E-08 78.7 12.1 35 41-75 77-111 (558)
237 TIGR02730 carot_isom carotene 97.5 7.7E-05 1.7E-09 85.0 5.1 35 44-78 1-35 (493)
238 KOG0029 Amine oxidase [Seconda 97.5 8.8E-05 1.9E-09 83.6 5.4 40 40-79 12-51 (501)
239 TIGR02732 zeta_caro_desat caro 97.5 0.0001 2.3E-09 83.3 5.9 61 45-106 1-77 (474)
240 PRK07818 dihydrolipoamide dehy 97.5 8.7E-05 1.9E-09 83.9 5.1 34 42-75 3-36 (466)
241 COG2509 Uncharacterized FAD-de 97.5 0.00079 1.7E-08 72.6 11.7 67 157-248 175-246 (486)
242 COG3075 GlpB Anaerobic glycero 97.5 0.0001 2.2E-09 75.8 4.7 51 42-98 1-51 (421)
243 PRK06912 acoL dihydrolipoamide 97.5 0.0012 2.6E-08 74.5 13.9 34 44-77 171-204 (458)
244 COG1148 HdrA Heterodisulfide r 97.5 0.00011 2.3E-09 79.3 4.9 37 43-79 124-160 (622)
245 PRK06292 dihydrolipoamide dehy 97.5 0.0001 2.2E-09 83.3 4.9 34 42-75 2-35 (460)
246 PLN02852 ferredoxin-NADP+ redu 97.5 0.00017 3.6E-09 81.1 6.4 38 41-78 24-63 (491)
247 TIGR02734 crtI_fam phytoene de 97.4 0.00011 2.4E-09 84.0 4.5 33 46-78 1-33 (502)
248 PRK07251 pyridine nucleotide-d 97.4 0.0015 3.4E-08 73.2 13.3 35 44-78 158-192 (438)
249 PRK05976 dihydrolipoamide dehy 97.4 0.0015 3.3E-08 74.0 13.1 34 44-77 181-214 (472)
250 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00017 3.8E-09 78.4 5.1 35 44-78 2-36 (377)
251 TIGR03315 Se_ygfK putative sel 97.4 0.00018 3.8E-09 86.9 5.5 37 42-78 536-572 (1012)
252 PRK07845 flavoprotein disulfid 97.4 0.002 4.4E-08 72.8 13.6 98 44-238 178-275 (466)
253 PRK04965 NADH:flavorubredoxin 97.4 0.0014 3.1E-08 71.9 12.1 35 44-78 3-39 (377)
254 PTZ00363 rab-GDP dissociation 97.4 0.00017 3.8E-09 80.2 4.8 39 41-79 2-40 (443)
255 KOG2404 Fumarate reductase, fl 97.3 0.0011 2.4E-08 68.1 9.6 174 44-238 10-207 (477)
256 COG3349 Uncharacterized conser 97.3 0.00022 4.8E-09 78.5 5.1 37 44-80 1-37 (485)
257 TIGR02053 MerA mercuric reduct 97.3 0.00021 4.5E-09 80.8 4.9 33 44-76 1-33 (463)
258 KOG0404 Thioredoxin reductase 97.3 0.00079 1.7E-08 65.7 8.0 35 41-75 6-40 (322)
259 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0013 2.8E-08 71.8 10.9 34 45-78 1-37 (364)
260 PRK12831 putative oxidoreducta 97.3 0.00027 6E-09 79.6 5.6 37 42-78 139-175 (464)
261 TIGR01424 gluta_reduc_2 glutat 97.3 0.002 4.4E-08 72.4 12.4 96 44-236 167-262 (446)
262 PF01593 Amino_oxidase: Flavin 97.3 0.0027 5.9E-08 70.1 13.4 46 188-240 223-268 (450)
263 PRK07846 mycothione reductase; 97.2 0.0029 6.3E-08 71.2 12.7 35 43-77 166-200 (451)
264 PLN02507 glutathione reductase 97.2 0.0032 7E-08 71.7 13.1 34 44-77 204-237 (499)
265 TIGR01421 gluta_reduc_1 glutat 97.2 0.0036 7.8E-08 70.4 13.3 34 44-77 167-200 (450)
266 PRK08010 pyridine nucleotide-d 97.2 0.0041 8.9E-08 69.8 13.5 34 44-77 159-192 (441)
267 TIGR01316 gltA glutamate synth 97.2 0.00045 9.7E-09 77.7 5.7 38 41-78 131-168 (449)
268 PRK06292 dihydrolipoamide dehy 97.2 0.0048 1E-07 69.7 13.9 34 44-77 170-203 (460)
269 KOG2852 Possible oxidoreductas 97.2 0.0022 4.8E-08 65.1 9.7 35 44-78 11-51 (380)
270 PRK09853 putative selenate red 97.1 0.00045 9.8E-09 83.1 5.4 37 42-78 538-574 (1019)
271 PRK06567 putative bifunctional 97.1 0.00045 9.7E-09 82.2 5.1 35 42-76 382-416 (1028)
272 COG3634 AhpF Alkyl hydroperoxi 97.1 0.00075 1.6E-08 69.9 5.9 31 41-71 209-239 (520)
273 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0037 8E-08 69.9 12.1 34 44-77 138-171 (427)
274 PRK12769 putative oxidoreducta 97.1 0.00051 1.1E-08 81.0 5.3 37 42-78 326-362 (654)
275 COG0562 Glf UDP-galactopyranos 97.1 0.00055 1.2E-08 70.5 4.7 35 44-78 2-36 (374)
276 PTZ00188 adrenodoxin reductase 97.1 0.0006 1.3E-08 75.8 5.4 36 43-78 39-75 (506)
277 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00058 1.3E-08 74.8 5.2 49 44-98 1-49 (419)
278 PF00732 GMC_oxred_N: GMC oxid 97.1 0.0004 8.7E-09 73.4 3.9 36 44-79 1-37 (296)
279 PRK12810 gltD glutamate syntha 97.1 0.00064 1.4E-08 77.0 5.7 37 42-78 142-178 (471)
280 PRK14989 nitrite reductase sub 97.1 0.0029 6.2E-08 76.3 11.5 37 43-79 3-43 (847)
281 PLN02785 Protein HOTHEAD 97.1 0.00094 2E-08 77.3 6.9 40 38-78 50-89 (587)
282 PRK02106 choline dehydrogenase 97.0 0.00065 1.4E-08 78.7 5.4 38 40-77 2-40 (560)
283 TIGR03452 mycothione_red mycot 97.0 0.0061 1.3E-07 68.6 13.1 34 44-77 170-203 (452)
284 KOG3923 D-aspartate oxidase [A 97.0 0.065 1.4E-06 55.1 18.7 56 43-98 3-72 (342)
285 PRK07846 mycothione reductase; 97.0 0.0047 1E-07 69.5 12.0 32 43-76 1-32 (451)
286 TIGR02374 nitri_red_nirB nitri 97.0 0.0048 1E-07 74.2 12.7 108 44-247 141-250 (785)
287 PRK09564 coenzyme A disulfide 97.0 0.0059 1.3E-07 68.6 12.7 33 44-76 150-182 (444)
288 PRK12775 putative trifunctiona 97.0 0.00064 1.4E-08 83.4 5.2 36 43-78 430-465 (1006)
289 PRK14989 nitrite reductase sub 97.0 0.005 1.1E-07 74.3 12.6 109 44-246 146-256 (847)
290 COG3486 IucD Lysine/ornithine 97.0 0.0024 5.1E-08 68.2 8.6 152 39-236 1-156 (436)
291 PRK11749 dihydropyrimidine deh 97.0 0.00084 1.8E-08 75.7 5.8 37 42-78 139-175 (457)
292 TIGR01438 TGR thioredoxin and 97.0 0.0075 1.6E-07 68.5 13.2 31 44-74 181-211 (484)
293 PRK14694 putative mercuric red 97.0 0.0083 1.8E-07 67.9 13.5 32 44-75 179-210 (468)
294 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0026 5.7E-08 65.7 8.3 37 42-78 2-38 (439)
295 PRK12778 putative bifunctional 97.0 0.00082 1.8E-08 80.5 5.4 36 42-77 430-465 (752)
296 KOG1276 Protoporphyrinogen oxi 97.0 0.00092 2E-08 71.4 5.0 67 41-108 9-96 (491)
297 COG3573 Predicted oxidoreducta 97.0 0.0013 2.8E-08 67.8 5.8 44 41-84 3-46 (552)
298 COG0446 HcaD Uncharacterized N 97.0 0.0058 1.2E-07 67.5 11.7 36 43-78 136-171 (415)
299 PTZ00052 thioredoxin reductase 96.9 0.0092 2E-07 68.0 13.4 31 44-74 183-213 (499)
300 PRK13512 coenzyme A disulfide 96.9 0.0063 1.4E-07 68.3 11.9 34 44-77 149-182 (438)
301 cd02979 PHOX_C FAD-dependent P 96.9 0.0056 1.2E-07 58.9 9.7 27 658-684 125-153 (167)
302 PRK14727 putative mercuric red 96.9 0.0097 2.1E-07 67.5 13.2 32 44-75 189-220 (479)
303 PF13434 K_oxygenase: L-lysine 96.9 0.01 2.2E-07 64.1 12.6 141 41-235 188-339 (341)
304 TIGR01423 trypano_reduc trypan 96.9 0.0088 1.9E-07 67.9 12.7 34 44-77 188-224 (486)
305 PTZ00058 glutathione reductase 96.9 0.0076 1.6E-07 69.4 12.3 35 43-77 237-271 (561)
306 TIGR01318 gltD_gamma_fam gluta 96.9 0.0012 2.6E-08 74.6 5.7 37 42-78 140-176 (467)
307 TIGR02374 nitri_red_nirB nitri 96.9 0.0046 1E-07 74.3 10.9 33 46-78 1-36 (785)
308 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.0011 2.3E-08 73.9 4.9 36 41-76 2-37 (454)
309 PTZ00153 lipoamide dehydrogena 96.9 0.0016 3.4E-08 76.1 6.5 34 42-75 115-148 (659)
310 PRK12814 putative NADPH-depend 96.9 0.0012 2.5E-08 77.8 5.4 37 42-78 192-228 (652)
311 TIGR01292 TRX_reduct thioredox 96.8 0.014 3E-07 61.5 12.7 33 44-76 142-174 (300)
312 TIGR02352 thiamin_ThiO glycine 96.8 0.22 4.7E-06 53.4 22.1 63 150-238 132-194 (337)
313 TIGR03452 mycothione_red mycot 96.8 0.0086 1.9E-07 67.4 11.5 32 43-76 2-33 (452)
314 PRK13748 putative mercuric red 96.7 0.014 3E-07 67.8 13.1 32 44-75 271-302 (561)
315 TIGR03140 AhpF alkyl hydropero 96.7 0.014 3.1E-07 66.9 12.8 33 44-76 353-385 (515)
316 PRK12770 putative glutamate sy 96.7 0.002 4.4E-08 70.0 5.5 37 42-78 17-53 (352)
317 PRK12809 putative oxidoreducta 96.7 0.0018 3.9E-08 76.1 5.5 37 42-78 309-345 (639)
318 TIGR01423 trypano_reduc trypan 96.7 0.0015 3.3E-08 74.0 4.6 34 42-75 2-36 (486)
319 PRK12771 putative glutamate sy 96.7 0.0016 3.6E-08 75.4 4.9 37 42-78 136-172 (564)
320 PTZ00153 lipoamide dehydrogena 96.6 0.014 3E-07 68.4 12.1 34 44-77 313-346 (659)
321 COG0445 GidA Flavin-dependent 96.6 0.0055 1.2E-07 67.8 8.0 37 42-78 3-39 (621)
322 PRK15317 alkyl hydroperoxide r 96.6 0.013 2.8E-07 67.2 11.4 34 44-77 352-385 (517)
323 COG0493 GltD NADPH-dependent g 96.6 0.0019 4.2E-08 72.0 4.2 35 44-78 124-158 (457)
324 TIGR01317 GOGAT_sm_gam glutama 96.5 0.0027 5.9E-08 72.1 5.3 36 43-78 143-178 (485)
325 PRK10262 thioredoxin reductase 96.4 0.027 5.8E-07 60.3 12.0 34 44-77 147-180 (321)
326 COG2907 Predicted NAD/FAD-bind 96.4 0.0038 8.3E-08 65.0 4.8 39 42-81 7-45 (447)
327 PLN02546 glutathione reductase 96.4 0.026 5.6E-07 65.0 12.1 35 43-77 252-286 (558)
328 PTZ00318 NADH dehydrogenase-li 96.4 0.021 4.6E-07 63.7 11.1 33 45-77 175-221 (424)
329 TIGR03197 MnmC_Cterm tRNA U-34 96.3 0.031 6.7E-07 61.4 11.5 61 151-238 131-191 (381)
330 COG2303 BetA Choline dehydroge 96.2 0.0046 1E-07 71.0 4.9 38 40-77 4-41 (542)
331 PRK13984 putative oxidoreducta 96.2 0.005 1.1E-07 72.0 5.4 37 42-78 282-318 (604)
332 COG1252 Ndh NADH dehydrogenase 96.2 0.024 5.3E-07 61.9 9.9 39 42-80 2-42 (405)
333 PLN02976 amine oxidase 96.2 0.0056 1.2E-07 75.2 5.3 37 42-78 692-728 (1713)
334 TIGR03377 glycerol3P_GlpA glyc 96.2 0.059 1.3E-06 61.8 13.6 76 150-246 123-200 (516)
335 TIGR01810 betA choline dehydro 96.0 0.0051 1.1E-07 70.8 4.0 33 45-77 1-34 (532)
336 COG4529 Uncharacterized protei 96.0 0.027 5.8E-07 61.9 9.0 35 44-78 2-39 (474)
337 PRK12770 putative glutamate sy 95.9 0.065 1.4E-06 58.2 11.7 33 44-76 173-206 (352)
338 COG1252 Ndh NADH dehydrogenase 95.8 0.038 8.3E-07 60.3 9.5 58 157-243 211-269 (405)
339 KOG0685 Flavin-containing amin 95.8 0.0079 1.7E-07 65.5 3.9 38 42-79 20-58 (498)
340 KOG1800 Ferredoxin/adrenodoxin 95.6 0.011 2.4E-07 62.4 4.0 35 44-78 21-57 (468)
341 TIGR01316 gltA glutamate synth 95.5 0.11 2.4E-06 58.4 12.1 33 44-76 273-305 (449)
342 TIGR03467 HpnE squalene-associ 95.5 0.81 1.7E-05 50.6 18.8 44 188-237 211-254 (419)
343 KOG4254 Phytoene desaturase [C 95.5 0.011 2.5E-07 63.6 3.6 36 41-76 12-47 (561)
344 PRK11749 dihydropyrimidine deh 95.4 0.15 3.2E-06 57.6 12.4 34 43-76 273-307 (457)
345 TIGR03143 AhpF_homolog putativ 95.3 0.14 3.1E-06 59.2 12.0 35 43-77 143-177 (555)
346 PRK12831 putative oxidoreducta 95.0 0.22 4.8E-06 56.3 12.3 33 44-76 282-314 (464)
347 PF06100 Strep_67kDa_ant: Stre 95.0 0.42 9.1E-06 53.1 13.8 35 44-78 3-41 (500)
348 KOG2311 NAD/FAD-utilizing prot 94.6 0.16 3.6E-06 55.3 9.1 37 41-77 26-62 (679)
349 KOG0399 Glutamate synthase [Am 94.5 0.03 6.5E-07 66.1 3.8 35 44-78 1786-1820(2142)
350 TIGR03169 Nterm_to_SelD pyridi 94.4 0.35 7.6E-06 52.7 11.7 29 44-72 146-180 (364)
351 PRK12810 gltD glutamate syntha 94.1 0.46 9.9E-06 53.9 12.2 37 359-400 431-467 (471)
352 PRK02705 murD UDP-N-acetylmura 94.0 0.058 1.2E-06 60.9 4.7 34 45-78 2-35 (459)
353 KOG2960 Protein involved in th 94.0 0.015 3.1E-07 56.5 -0.2 36 43-78 76-113 (328)
354 TIGR03862 flavo_PP4765 unchara 93.9 0.49 1.1E-05 51.6 11.5 57 154-237 85-141 (376)
355 PRK12814 putative NADPH-depend 93.9 0.37 8E-06 56.9 11.4 34 43-76 323-357 (652)
356 PF01210 NAD_Gly3P_dh_N: NAD-d 93.9 0.065 1.4E-06 51.0 4.1 32 45-76 1-32 (157)
357 PRK12778 putative bifunctional 93.9 0.5 1.1E-05 56.9 12.5 33 44-76 571-604 (752)
358 COG1251 NirB NAD(P)H-nitrite r 93.8 0.15 3.4E-06 58.6 7.4 33 44-76 146-178 (793)
359 COG0569 TrkA K+ transport syst 93.7 0.073 1.6E-06 53.9 4.2 56 45-101 2-64 (225)
360 PRK06249 2-dehydropantoate 2-r 93.6 0.086 1.9E-06 56.3 5.0 35 42-76 4-38 (313)
361 PF00996 GDI: GDP dissociation 93.6 0.081 1.8E-06 58.6 4.7 39 41-79 2-40 (438)
362 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.075 1.6E-06 51.9 3.7 33 45-77 1-33 (180)
363 PRK01438 murD UDP-N-acetylmura 93.4 0.081 1.8E-06 60.1 4.5 33 44-76 17-49 (480)
364 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.086 1.9E-06 51.7 3.5 32 45-76 2-33 (185)
365 KOG1336 Monodehydroascorbate/f 93.0 0.37 8E-06 52.9 8.4 38 41-78 211-248 (478)
366 TIGR03378 glycerol3P_GlpB glyc 92.8 2.2 4.7E-05 47.2 14.3 65 151-238 259-324 (419)
367 KOG1238 Glucose dehydrogenase/ 92.7 0.13 2.9E-06 58.5 4.8 39 40-78 54-93 (623)
368 PF02558 ApbA: Ketopantoate re 92.7 0.14 3E-06 48.1 4.3 31 46-76 1-31 (151)
369 PRK14106 murD UDP-N-acetylmura 92.5 0.15 3.3E-06 57.3 5.1 35 42-76 4-38 (450)
370 PRK06129 3-hydroxyacyl-CoA deh 91.9 0.16 3.6E-06 54.0 4.2 33 45-77 4-36 (308)
371 PRK05708 2-dehydropantoate 2-r 91.9 0.2 4.2E-06 53.3 4.7 33 44-76 3-35 (305)
372 PRK07530 3-hydroxybutyryl-CoA 91.7 0.2 4.3E-06 52.9 4.5 34 44-77 5-38 (292)
373 PRK06370 mercuric reductase; V 91.5 0.22 4.7E-06 56.4 4.7 99 44-236 172-270 (463)
374 KOG3851 Sulfide:quinone oxidor 91.4 0.67 1.4E-05 48.3 7.6 45 40-84 36-82 (446)
375 PRK07819 3-hydroxybutyryl-CoA 91.3 0.23 4.9E-06 52.3 4.4 34 45-78 7-40 (286)
376 PRK05675 sdhA succinate dehydr 91.3 3.7 8.1E-05 47.7 14.7 64 155-239 126-191 (570)
377 TIGR01470 cysG_Nterm siroheme 91.2 0.29 6.3E-06 48.8 4.9 33 44-76 10-42 (205)
378 PRK06719 precorrin-2 dehydroge 91.1 0.29 6.4E-06 46.5 4.5 32 42-73 12-43 (157)
379 PF13478 XdhC_C: XdhC Rossmann 91.0 0.29 6.3E-06 45.3 4.3 35 46-80 1-35 (136)
380 PF02254 TrkA_N: TrkA-N domain 91.0 0.24 5.3E-06 44.1 3.7 32 46-77 1-32 (116)
381 PRK12769 putative oxidoreducta 91.0 1.5 3.3E-05 51.8 11.4 34 44-77 469-503 (654)
382 PRK08293 3-hydroxybutyryl-CoA 90.8 0.28 6E-06 51.7 4.5 34 44-77 4-37 (287)
383 PRK06522 2-dehydropantoate 2-r 90.7 0.26 5.6E-06 52.2 4.2 32 45-76 2-33 (304)
384 PRK12921 2-dehydropantoate 2-r 90.7 0.29 6.2E-06 51.9 4.5 30 45-74 2-31 (305)
385 TIGR01318 gltD_gamma_fam gluta 90.5 2.3 5E-05 48.1 11.8 35 43-77 282-317 (467)
386 TIGR02354 thiF_fam2 thiamine b 90.4 0.39 8.4E-06 47.7 4.9 36 41-76 19-55 (200)
387 PRK15116 sulfur acceptor prote 90.4 0.38 8.3E-06 49.8 4.9 36 42-77 29-65 (268)
388 cd00401 AdoHcyase S-adenosyl-L 90.3 0.29 6.3E-06 53.9 4.2 35 43-77 202-236 (413)
389 PRK00066 ldh L-lactate dehydro 90.3 0.42 9.1E-06 51.0 5.3 38 40-77 3-42 (315)
390 PRK09260 3-hydroxybutyryl-CoA 90.2 0.3 6.4E-06 51.5 4.1 33 45-77 3-35 (288)
391 PF01262 AlaDh_PNT_C: Alanine 90.2 0.34 7.5E-06 46.6 4.2 35 42-76 19-53 (168)
392 PF00899 ThiF: ThiF family; I 90.2 0.3 6.6E-06 45.0 3.7 35 43-77 2-37 (135)
393 PRK06035 3-hydroxyacyl-CoA deh 90.0 0.3 6.6E-06 51.5 4.0 34 44-77 4-37 (291)
394 TIGR00518 alaDH alanine dehydr 90.0 0.32 6.9E-06 53.2 4.2 34 43-76 167-200 (370)
395 PRK12779 putative bifunctional 89.9 2.4 5.3E-05 52.1 12.1 33 44-76 448-480 (944)
396 KOG2495 NADH-dehydrogenase (ub 89.9 1.9 4.2E-05 46.8 9.7 41 189-236 288-328 (491)
397 PRK06116 glutathione reductase 89.8 0.37 8E-06 54.2 4.8 35 43-77 167-201 (450)
398 PRK05808 3-hydroxybutyryl-CoA 89.8 0.37 8E-06 50.6 4.4 33 45-77 5-37 (282)
399 PRK06718 precorrin-2 dehydroge 89.8 0.48 1E-05 47.1 5.0 33 43-75 10-42 (202)
400 cd05292 LDH_2 A subgroup of L- 89.8 0.37 8.1E-06 51.3 4.5 33 45-77 2-36 (308)
401 PRK09424 pntA NAD(P) transhydr 89.8 0.31 6.6E-06 55.2 3.9 36 42-77 164-199 (509)
402 PRK07066 3-hydroxybutyryl-CoA 89.8 0.44 9.5E-06 50.9 4.9 34 44-77 8-41 (321)
403 KOG1336 Monodehydroascorbate/f 89.7 1.3 2.8E-05 48.9 8.4 40 190-239 143-182 (478)
404 COG1004 Ugd Predicted UDP-gluc 89.6 0.37 8E-06 51.9 4.1 33 45-77 2-34 (414)
405 PF13241 NAD_binding_7: Putati 89.5 0.24 5.2E-06 43.5 2.3 35 42-76 6-40 (103)
406 TIGR03315 Se_ygfK putative sel 89.4 2.4 5.2E-05 52.1 11.3 35 43-77 666-702 (1012)
407 PRK11064 wecC UDP-N-acetyl-D-m 89.3 0.38 8.2E-06 53.5 4.2 34 44-77 4-37 (415)
408 PF00056 Ldh_1_N: lactate/mala 89.3 0.5 1.1E-05 44.0 4.4 34 44-77 1-37 (141)
409 TIGR01763 MalateDH_bact malate 89.2 0.51 1.1E-05 50.2 4.9 33 44-76 2-35 (305)
410 PRK12475 thiamine/molybdopteri 89.2 0.51 1.1E-05 50.9 4.9 36 41-76 22-58 (338)
411 KOG4716 Thioredoxin reductase 89.1 0.38 8.2E-06 50.3 3.7 35 41-75 17-51 (503)
412 TIGR02356 adenyl_thiF thiazole 88.8 0.63 1.4E-05 46.2 5.0 36 41-76 19-55 (202)
413 PRK08229 2-dehydropantoate 2-r 88.7 0.52 1.1E-05 50.9 4.7 31 45-75 4-34 (341)
414 PF01488 Shikimate_DH: Shikima 88.4 0.73 1.6E-05 42.5 4.9 35 42-76 11-46 (135)
415 cd01080 NAD_bind_m-THF_DH_Cycl 88.3 0.63 1.4E-05 44.8 4.4 35 41-75 42-77 (168)
416 COG1063 Tdh Threonine dehydrog 88.1 0.56 1.2E-05 50.9 4.4 32 45-76 171-203 (350)
417 KOG1346 Programmed cell death 88.0 0.74 1.6E-05 49.5 5.0 48 190-244 409-458 (659)
418 KOG2495 NADH-dehydrogenase (ub 87.9 6.7 0.00015 42.8 12.1 48 190-238 124-171 (491)
419 PTZ00082 L-lactate dehydrogena 87.8 0.81 1.8E-05 49.0 5.4 35 44-78 7-42 (321)
420 TIGR02355 moeB molybdopterin s 87.8 0.73 1.6E-05 47.1 4.8 36 41-76 22-58 (240)
421 PRK07688 thiamine/molybdopteri 87.7 0.71 1.5E-05 49.8 4.9 36 41-76 22-58 (339)
422 PRK04308 murD UDP-N-acetylmura 87.7 0.74 1.6E-05 51.8 5.3 35 43-77 5-39 (445)
423 PLN02602 lactate dehydrogenase 87.7 0.87 1.9E-05 49.2 5.6 33 44-76 38-72 (350)
424 PRK06130 3-hydroxybutyryl-CoA 87.7 0.66 1.4E-05 49.4 4.7 34 44-77 5-38 (311)
425 PF13738 Pyr_redox_3: Pyridine 87.7 0.48 1E-05 46.6 3.4 36 42-77 166-201 (203)
426 PRK04148 hypothetical protein; 87.5 0.47 1E-05 43.6 2.9 33 44-77 18-50 (134)
427 PRK14620 NAD(P)H-dependent gly 87.1 0.69 1.5E-05 49.6 4.4 32 45-76 2-33 (326)
428 TIGR00936 ahcY adenosylhomocys 87.0 0.71 1.5E-05 50.8 4.4 35 43-77 195-229 (406)
429 PRK08644 thiamine biosynthesis 86.9 0.98 2.1E-05 45.3 5.1 36 41-76 26-62 (212)
430 PRK02472 murD UDP-N-acetylmura 86.8 0.85 1.8E-05 51.2 5.1 34 44-77 6-39 (447)
431 cd01487 E1_ThiF_like E1_ThiF_l 86.8 0.96 2.1E-05 43.8 4.8 32 45-76 1-33 (174)
432 PRK06223 malate dehydrogenase; 86.8 0.81 1.7E-05 48.7 4.7 34 44-77 3-37 (307)
433 PLN02545 3-hydroxybutyryl-CoA 86.7 0.79 1.7E-05 48.4 4.6 33 45-77 6-38 (295)
434 PRK05690 molybdopterin biosynt 86.7 0.9 2E-05 46.6 4.8 35 42-76 31-66 (245)
435 cd05293 LDH_1 A subgroup of L- 86.6 0.92 2E-05 48.3 4.9 34 43-76 3-38 (312)
436 TIGR03026 NDP-sugDHase nucleot 86.3 0.67 1.5E-05 51.5 3.9 33 45-77 2-34 (411)
437 TIGR02964 xanthine_xdhC xanthi 86.3 0.88 1.9E-05 46.7 4.4 36 42-77 99-134 (246)
438 PRK03369 murD UDP-N-acetylmura 86.1 0.94 2E-05 51.5 5.0 32 44-75 13-44 (488)
439 TIGR00561 pntA NAD(P) transhyd 86.0 0.75 1.6E-05 52.0 4.0 35 43-77 164-198 (511)
440 cd00757 ThiF_MoeB_HesA_family 85.9 1.1 2.4E-05 45.4 4.9 36 41-76 19-55 (228)
441 PF10727 Rossmann-like: Rossma 85.8 0.5 1.1E-05 43.1 2.1 35 41-75 8-42 (127)
442 PRK07502 cyclohexadienyl dehyd 85.7 0.85 1.9E-05 48.5 4.2 33 44-76 7-41 (307)
443 COG3486 IucD Lysine/ornithine 85.7 6.5 0.00014 42.7 10.5 48 187-236 291-339 (436)
444 PRK14618 NAD(P)H-dependent gly 85.6 0.96 2.1E-05 48.6 4.6 32 45-76 6-37 (328)
445 PRK05476 S-adenosyl-L-homocyst 85.5 0.98 2.1E-05 50.0 4.6 35 43-77 212-246 (425)
446 PRK07417 arogenate dehydrogena 85.4 0.78 1.7E-05 48.1 3.7 32 45-76 2-33 (279)
447 cd00755 YgdL_like Family of ac 85.4 1.2 2.7E-05 45.1 4.9 35 42-76 10-45 (231)
448 cd01483 E1_enzyme_family Super 85.3 1.4 3E-05 41.0 4.9 33 45-77 1-34 (143)
449 PRK12775 putative trifunctiona 85.3 7.2 0.00016 48.4 12.4 33 43-75 571-604 (1006)
450 PRK14619 NAD(P)H-dependent gly 85.2 1.2 2.6E-05 47.4 5.0 34 44-77 5-38 (308)
451 PRK08328 hypothetical protein; 85.2 1.3 2.7E-05 45.1 4.9 35 42-76 26-61 (231)
452 PRK08306 dipicolinate synthase 85.1 0.93 2E-05 47.9 4.1 34 43-76 152-185 (296)
453 PRK10669 putative cation:proto 85.0 0.91 2E-05 52.6 4.3 35 43-77 417-451 (558)
454 KOG0405 Pyridine nucleotide-di 84.9 1.2 2.6E-05 47.0 4.6 37 40-76 17-53 (478)
455 COG5044 MRS6 RAB proteins gera 84.9 1.3 2.8E-05 47.2 4.8 39 43-81 6-44 (434)
456 PRK00094 gpsA NAD(P)H-dependen 84.9 0.94 2E-05 48.4 4.1 32 45-76 3-34 (325)
457 PLN02353 probable UDP-glucose 84.7 0.95 2.1E-05 51.0 4.1 33 45-77 3-37 (473)
458 PRK09496 trkA potassium transp 84.7 0.96 2.1E-05 50.8 4.2 33 45-77 2-34 (453)
459 cd05291 HicDH_like L-2-hydroxy 84.6 1.1 2.4E-05 47.6 4.4 33 45-77 2-36 (306)
460 PRK01710 murD UDP-N-acetylmura 84.3 1.1 2.5E-05 50.4 4.6 34 44-77 15-48 (458)
461 PRK08223 hypothetical protein; 84.2 1.4 3.1E-05 45.9 4.9 36 41-76 25-61 (287)
462 PRK15057 UDP-glucose 6-dehydro 84.1 1 2.2E-05 49.5 4.0 33 45-78 2-34 (388)
463 cd01339 LDH-like_MDH L-lactate 84.0 1.1 2.4E-05 47.4 4.2 31 46-76 1-32 (300)
464 PRK12549 shikimate 5-dehydroge 83.7 1.4 3E-05 46.4 4.5 34 43-76 127-161 (284)
465 PRK07531 bifunctional 3-hydrox 83.6 1.3 2.7E-05 50.6 4.6 33 45-77 6-38 (495)
466 PRK04690 murD UDP-N-acetylmura 83.6 1.3 2.9E-05 50.1 4.7 34 44-77 9-42 (468)
467 PRK13984 putative oxidoreducta 83.5 11 0.00024 44.1 12.6 35 359-399 569-603 (604)
468 cd01492 Aos1_SUMO Ubiquitin ac 83.4 1.6 3.4E-05 43.2 4.6 36 41-76 19-55 (197)
469 cd01485 E1-1_like Ubiquitin ac 83.4 1.5 3.4E-05 43.3 4.6 35 42-76 18-53 (198)
470 PTZ00117 malate dehydrogenase; 83.3 1.5 3.3E-05 46.8 4.8 37 42-78 4-41 (319)
471 cd01078 NAD_bind_H4MPT_DH NADP 83.3 1.6 3.5E-05 42.9 4.7 33 43-75 28-61 (194)
472 COG0446 HcaD Uncharacterized N 83.3 4.7 0.0001 44.2 8.9 40 190-239 69-108 (415)
473 COG0771 MurD UDP-N-acetylmuram 83.0 1.4 3.1E-05 48.9 4.5 36 43-78 7-42 (448)
474 PLN02976 amine oxidase 82.9 73 0.0016 40.9 19.1 37 359-398 1151-1187(1713)
475 cd05290 LDH_3 A subgroup of L- 82.8 1.6 3.5E-05 46.3 4.7 33 45-77 1-35 (307)
476 PRK07326 short chain dehydroge 82.7 1.7 3.6E-05 43.8 4.7 35 42-76 5-40 (237)
477 PRK08268 3-hydroxy-acyl-CoA de 82.7 1.6 3.4E-05 49.9 4.8 34 44-77 8-41 (507)
478 cd05311 NAD_bind_2_malic_enz N 82.7 1.7 3.7E-05 44.0 4.6 35 42-76 24-61 (226)
479 PRK07523 gluconate 5-dehydroge 82.5 2.1 4.5E-05 43.8 5.3 35 42-76 9-44 (255)
480 PLN02494 adenosylhomocysteinas 82.5 1.6 3.5E-05 48.7 4.6 35 43-77 254-288 (477)
481 PRK03659 glutathione-regulated 82.4 1.5 3.2E-05 51.4 4.5 34 43-76 400-433 (601)
482 cd01075 NAD_bind_Leu_Phe_Val_D 82.3 2.1 4.5E-05 42.5 5.0 32 44-75 29-60 (200)
483 PRK01368 murD UDP-N-acetylmura 82.3 1.7 3.6E-05 49.0 4.8 33 43-76 6-38 (454)
484 TIGR01915 npdG NADPH-dependent 82.2 1.6 3.5E-05 43.9 4.2 32 45-76 2-34 (219)
485 PF00670 AdoHcyase_NAD: S-aden 82.2 1.5 3.3E-05 41.6 3.7 33 44-76 24-56 (162)
486 PRK05600 thiamine biosynthesis 82.1 1.8 3.9E-05 47.3 4.9 36 41-76 39-75 (370)
487 COG1179 Dinucleotide-utilizing 81.9 1.6 3.5E-05 43.8 4.0 35 43-77 30-65 (263)
488 PRK00683 murD UDP-N-acetylmura 81.8 1.6 3.4E-05 48.7 4.3 34 44-77 4-37 (418)
489 COG1748 LYS9 Saccharopine dehy 81.8 1.7 3.7E-05 47.3 4.5 34 44-77 2-36 (389)
490 TIGR03736 PRTRC_ThiF PRTRC sys 81.7 2 4.3E-05 43.9 4.6 36 41-76 9-55 (244)
491 PRK09496 trkA potassium transp 81.4 1.5 3.3E-05 49.2 4.2 35 43-77 231-265 (453)
492 TIGR02853 spore_dpaA dipicolin 81.2 1.6 3.5E-05 45.9 4.0 34 43-76 151-184 (287)
493 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.1 1.6 3.4E-05 49.8 4.1 34 44-77 6-39 (503)
494 PRK05866 short chain dehydroge 80.9 2.8 6.1E-05 44.1 5.8 36 41-76 38-74 (293)
495 PRK05597 molybdopterin biosynt 80.6 2 4.4E-05 46.7 4.6 36 41-76 26-62 (355)
496 PRK03803 murD UDP-N-acetylmura 80.6 2.1 4.5E-05 48.1 4.9 36 41-76 4-39 (448)
497 PRK03562 glutathione-regulated 80.5 1.6 3.5E-05 51.1 4.1 35 43-77 400-434 (621)
498 TIGR03366 HpnZ_proposed putati 80.4 2.2 4.8E-05 44.5 4.7 33 44-76 122-155 (280)
499 PRK08217 fabG 3-ketoacyl-(acyl 80.3 2.3 5E-05 43.2 4.7 34 43-76 5-39 (253)
500 COG1893 ApbA Ketopantoate redu 80.2 1.8 4E-05 45.9 4.0 32 45-76 2-33 (307)
No 1
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-81 Score=715.03 Aligned_cols=534 Identities=29% Similarity=0.454 Sum_probs=411.1
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCcccccee
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~ 118 (716)
|++.++||+||||||+||++|++|+++|++|+||||++.+...+++..+++++|++|+++ ||.+++.+.+.+.......
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCc
Confidence 446679999999999999999999999999999999999999999999999999999999 9999999988776544445
Q ss_pred EEeecCCCCceeeccCCCccc-c-------ccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccce
Q 005056 119 IYCTSVTGPILGSVDHMQPQD-F-------EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (716)
Q Consensus 119 ~~~~~~~g~~l~~~~~~~~~~-~-------~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 190 (716)
.+.....|..+..+....... . ....+|+....++|..|+++|.+.+.+.+. ++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~------------------v~ 143 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPG------------------VT 143 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCC------------------ce
Confidence 555566677665544321111 0 011245556789999999999999887532 39
Q ss_pred EEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccc
Q 005056 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (716)
Q Consensus 191 v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~ 270 (716)
|+++++|+++++++++|++++.+..+|+ .+++++||||+|||++|.||+++|+.+.|....+..+.+.+..+++....
T Consensus 144 i~~~~~v~~i~~~~~~v~v~~~~~~~g~--~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 221 (545)
T PRK06126 144 LRYGHRLTDFEQDADGVTATVEDLDGGE--SLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALV 221 (545)
T ss_pred EEeccEEEEEEECCCeEEEEEEECCCCc--EEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHh
Confidence 9999999999999999988887544553 45899999999999999999999999999888888788877765554432
Q ss_pred ccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhh
Q 005056 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV 350 (716)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~ 350 (716)
...+...+++++|+..+++...+. +..|.+. .+.+.. ....++++.+.+.+++.++. ...+++....+|.+...+
T Consensus 222 -~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~w~~~~~~ 296 (545)
T PRK06126 222 -GHDPAWMYWLFNPDRRGVLVAIDG-RDEWLFH-QLRGGE-DEFTIDDVDARAFVRRGVGE-DIDYEVLSVVPWTGRRLV 296 (545)
T ss_pred -cCCCceEEEEECCCccEEEEEECC-CCeEEEE-EecCCC-CCCCCCHHHHHHHHHHhcCC-CCCeEEEeecccchhhee
Confidence 233455677778876666666553 3567665 222222 22356778889999999984 356778888899999999
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (716)
+++|+ +|||||+|||||.|+|++|||||+||+||+||||||++++++++.+++|++|++||+|+++.+++.+..+...
T Consensus 297 a~~~~--~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~ 374 (545)
T PRK06126 297 ADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADA 374 (545)
T ss_pred hhhhc--cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 99998 4999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccc
Q 005056 431 AMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQ 510 (716)
Q Consensus 431 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 510 (716)
+..... .+ ...+.++.+...|+++.+++.....-.
T Consensus 375 ~~~~~~----~~-----------------------------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~ 409 (545)
T PRK06126 375 LGSFPV----PP-----------------------------------------EIEDDGPAGDAARRKVGDALSEHARQE 409 (545)
T ss_pred hccccc----ch-----------------------------------------hhccCChhHHHHHHHHHHHHhhccccc
Confidence 431100 00 001122333334444444443223333
Q ss_pred ccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCCCCcceEEE
Q 005056 511 LQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVSGDKVEFLL 590 (716)
Q Consensus 511 ~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~~~~~~f~L 590 (716)
+...++++||+|.+++++.+++.. +|.++...|.|+++||+|+||+||.. ++||+||+|. +|+|
T Consensus 410 ~~~~~~~~g~~Y~~~~~~~~~~~~-----~~~~~~~~~~~~~~pG~r~ph~~l~~--------~~s~~dl~g~---~f~L 473 (545)
T PRK06126 410 FNSPGITLGYRYDGSPIIVPDGTP-----PPPDDPGVYVPSACPGGRAPHAWLSD--------GRSLYDLFGP---GFTL 473 (545)
T ss_pred cccceeeecceecCCceecCCCCC-----CCCCcccccccCCCCCcCCCCeeecC--------CcchHHhcCC---ceEE
Confidence 344568899999999988755332 12334456899999999999999963 5799999985 5999
Q ss_pred EEcCCccchHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCccchhhhhhccCCCcchhhhhcccCCce
Q 005056 591 IIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGA 670 (716)
Q Consensus 591 l~~~~~~~~~~~~aa~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ga 670 (716)
|++.++ ..|.+++.++++.+||||+++.++. .+|. ++++.||
T Consensus 474 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~---~~~~~~a 515 (545)
T PRK06126 474 LRFGDA--AVDVAPLEAAAAALGVPLAVVDLPG---------------------------------PEAA---ALYEADL 515 (545)
T ss_pred EecCCC--cHHHHHHHHHHHHhCCceEEEEeCc---------------------------------HHhH---hhccCCE
Confidence 998754 4699999999999999999999931 1343 3457899
Q ss_pred EEEcCCceEEEeeCCCCCCChHHHHHHHHH
Q 005056 671 ILVRPDDHIAWRSKSGVSGNPKLEMEMAFS 700 (716)
Q Consensus 671 vLVRPDg~VaWr~~~~~~~~~~~~l~~~~~ 700 (716)
||||||||||||+++. ++|+.+.|+++|.
T Consensus 516 vLvRPD~~vawr~~~~-~~~~~~~l~~~~~ 544 (545)
T PRK06126 516 VLVRPDQHVAWRGDAA-PDDAAALLDQVLG 544 (545)
T ss_pred EEECCCCceeeccCCC-CCCHHHHHHHHhc
Confidence 9999999999999865 7888887777664
No 2
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-64 Score=580.36 Aligned_cols=522 Identities=23% Similarity=0.347 Sum_probs=359.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
.++||+||||||+||++|+.|+++|++|+||||++.+...+++..+++++|++|+++ |+.+++.+.+.+..... .+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~--~~~ 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGK--VFL 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeecee--EEe
Confidence 568999999999999999999999999999999998888899999999999999999 99999988775433211 111
Q ss_pred ecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~ 201 (716)
. +..+..++...... ........++|..|+++|.+++.+.+. ++|++++++++++
T Consensus 99 ~---~~~~~~~~~~~~~~----~~~~~~~~~~q~~le~~L~~~~~~~~~------------------v~v~~~~~v~~i~ 153 (547)
T PRK08132 99 R---DEEVYRFDLLPEPG----HRRPAFINLQQYYVEGYLVERAQALPN------------------IDLRWKNKVTGLE 153 (547)
T ss_pred C---CCeEEEecCCCCCC----CCCCceEecCHHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEE
Confidence 1 12222221111000 001123568999999999999987642 3899999999999
Q ss_pred ecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEE
Q 005056 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (716)
Q Consensus 202 ~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 281 (716)
++++++++++... ++ ..+++|||||+|||++|.||+.+|+++.|......++.+...... .+ .....+++
T Consensus 154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~--~~----~~~~~~~~ 223 (547)
T PRK08132 154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA--DF----PTERWFWF 223 (547)
T ss_pred EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC--CC----CCeeeEEE
Confidence 9999988877632 23 247999999999999999999999999887765555544333210 01 11112222
Q ss_pred E---ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecC
Q 005056 282 F---NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (716)
Q Consensus 282 ~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~ 358 (716)
. .++.. +++ ....++.|.+..............+.+.+.+.++++++.. .++++.....|.++.+++++|+ +
T Consensus 224 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~--~ 298 (547)
T PRK08132 224 DPPFHPGQS-VLL-HRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFR--H 298 (547)
T ss_pred eccCCCCcE-EEE-EeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccc--c
Confidence 1 22222 222 2223455654432222111112345677788899888743 4556666667888889999998 4
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhccccccc
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL 438 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~ 438 (716)
|||||+|||||.|+|++|||||+||+||+||+|||+.+++|++.+.+|++|++||+|+++.+++.+..+...+...
T Consensus 299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~---- 374 (547)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK---- 374 (547)
T ss_pred ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999998877655432110
Q ss_pred CCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005056 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL 518 (716)
Q Consensus 439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l 518 (716)
.+ ... .++...+..+ . +...++..+.. ....+
T Consensus 375 --~~-~~~----------------~~r~~~~~~~-------------~--------~~~~~~~~~~~--------~~~~~ 406 (547)
T PRK08132 375 --SP-VSR----------------LFRDAVLRLA-------------R--------DHPFARRLVNS--------GRLSV 406 (547)
T ss_pred --CH-HHH----------------HHHHHHHhhh-------------c--------ccHHHHHHHhc--------ccccc
Confidence 00 000 0011010000 0 00111122211 11247
Q ss_pred CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCCCCcceEEEEEcCCccc
Q 005056 519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVSGDKVEFLLIIAPVEES 598 (716)
Q Consensus 519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~~~~~~f~Ll~~~~~~~ 598 (716)
+++|.+++++.++. ..|.++.+||.|+||+||.. ++.++||+||+|. +|+||++.++
T Consensus 407 ~~~y~~~~~~~~~~-------------~~~~~~~~pG~r~p~~~~~~-----~~~~~~l~dl~g~---~f~ll~~~~~-- 463 (547)
T PRK08132 407 PAVYADSPLNTPDG-------------DAFAGGPVPGAPAPDAPVRA-----DGEPGWLLDLLGG---GFTLLLFGDD-- 463 (547)
T ss_pred CcccCCCCCCCCcc-------------cccCCCCCCCCCCCCCcccC-----CCCceEHHHhcCC---CEEEEEecCC--
Confidence 89999998874321 12557889999999999975 3457899999974 5999997643
Q ss_pred hHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCccchhhhhhccCCCcchhhhhcccCCceEEEcCCce
Q 005056 599 YHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDH 678 (716)
Q Consensus 599 ~~~~~aa~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~ 678 (716)
..| .++.+++...+++++++.+++++.. .....++.|.. +.|.+.+++.+.++||||||||
T Consensus 464 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~d~~--------~~~~~~~~~~~~~~~LvRPDg~ 524 (547)
T PRK08132 464 AAA-AALLQALAAAALPVRVVAVVPAGAA----------QAAAGVLEDAD--------GLAAERYDARPGTVYLIRPDQH 524 (547)
T ss_pred chh-hhhhhhhhccCCceEEEEEecCccc----------ccCcccccCcc--------cHHHHHhCCCCCeEEEECCCce
Confidence 346 3555566778999999998543210 00111344532 6899999999999999999999
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHhhC
Q 005056 679 IAWRSKSGVSGNPKLEMEMAFSAVLG 704 (716)
Q Consensus 679 VaWr~~~~~~~~~~~~l~~~~~~~~~ 704 (716)
||||... +....|.+.|+++++
T Consensus 525 va~~~~~----~~~~~~~~~l~~~~~ 546 (547)
T PRK08132 525 VAARWRT----PDAAAVRAALARALG 546 (547)
T ss_pred EEEEecC----CCHHHHHHHHHHHhc
Confidence 9999652 233557777777665
No 3
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=558.17 Aligned_cols=489 Identities=25% Similarity=0.328 Sum_probs=342.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
.++||+||||||+||++|+.|+++|++|+||||++.+...+++..+++++||+|+++ |+.+++.+.+.+...... +.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~--~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRI--YR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeE--Ee
Confidence 458999999999999999999999999999999999988999999999999999999 999999887765432221 11
Q ss_pred ecCCCCceeeccCCCccccccccCCc-cccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.+..+.......... .....+. ....++|..|+++|.+.+.+.|+ +|+++++++++
T Consensus 79 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i 135 (502)
T PRK06184 79 ---DDGSVAESDMFAHLE-PTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGF 135 (502)
T ss_pred ---CCceEEEeecccccc-CCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEE
Confidence 111121111110000 0001121 23578999999999999988876 99999999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCcccccccc-ceEEEEEecCccccccccCCCceEE
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~-~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
++++++|++++...+++ .+++|||||+|||++|.||+++|+.+.|..... .++...+....+ .....+
T Consensus 136 ~~~~~~v~v~~~~~~~~----~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~ 204 (502)
T PRK06184 136 EQDADGVTARVAGPAGE----ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL-------DRDAWH 204 (502)
T ss_pred EEcCCcEEEEEEeCCCe----EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC-------CCcceE
Confidence 99999988887532222 479999999999999999999999999887654 444433322111 111122
Q ss_pred EEEecC-ceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCcee-EEeeccceechhhhccceec
Q 005056 280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCC 357 (716)
Q Consensus 280 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~-i~~~~~w~~~~~~a~~~~~~ 357 (716)
.+..+. ....+++.+. ...|.+.+.... ......+++.+.++++..++.....++ +.....|.+..+++++|+
T Consensus 205 ~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-- 279 (502)
T PRK06184 205 QWPDGDMGMIALCPLPG-TDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR-- 279 (502)
T ss_pred EccCCCCcEEEEEEccC-CCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc--
Confidence 222232 2223333332 235655554322 222456788899999988875544332 334556778888899998
Q ss_pred CCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccc
Q 005056 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA 437 (716)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~ 437 (716)
+|||||+|||||.|+|++|||||+||+||+||+|||+++++| +.+.+|++|++||+|+++.+++.+...++....
T Consensus 280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~---- 354 (502)
T PRK06184 280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR---- 354 (502)
T ss_pred CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 499999999999999999999999999999999999999999 889999999999999999998877655432210
Q ss_pred cCCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccc
Q 005056 438 LGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAED 517 (716)
Q Consensus 438 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (716)
.. .++. . ....
T Consensus 355 ------------------------~~------------------------------~~~~---------~------~~~~ 365 (502)
T PRK06184 355 ------------------------GD------------------------------MRRG---------R------DVQQ 365 (502)
T ss_pred ------------------------HH------------------------------hhcc---------c------chhc
Confidence 00 0000 0 0112
Q ss_pred cCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCCCCcceEEEEEcCCcc
Q 005056 518 LGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVSGDKVEFLLIIAPVEE 597 (716)
Q Consensus 518 lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~~~~~~f~Ll~~~~~~ 597 (716)
++.+|..++++..++. ..+..+||.|+||+||... +++.+||+|+++.+ +|+||++.+.
T Consensus 366 ~~~~y~~~~~~~~~~~--------------~~~~~~~G~r~p~~~~~~~----~~~~~~l~d~~~~~--~~~ll~~~~~- 424 (502)
T PRK06184 366 LDLGYRGSSLAVDGPE--------------RTGGLRAGDRAPDAPLLGA----AGQPTRLFDLFRGP--HWTLLAFGAG- 424 (502)
T ss_pred ceeecCCCcccCCCcc--------------cCCCCCCcCCCCCchhccC----CCceeeHHHhhCCC--cEEEEEecCC-
Confidence 5667777777543211 0246789999999999752 34678999999743 5999986532
Q ss_pred chHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCccchhhhhhccCCCcchhhhhcccCCceEEEcCCc
Q 005056 598 SYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDD 677 (716)
Q Consensus 598 ~~~~~~aa~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg 677 (716)
.|.. .... ++.++.+++.. ...++.|.. +.|.+.+++...++|||||||
T Consensus 425 --~~~~-----~~~~--~~~~~~~~~~~--------------~~~~~~d~~--------g~~~~~~~~~~~~~~lvRPDg 473 (502)
T PRK06184 425 --AAAI-----LARR--GLRIHRVGDAA--------------EGGDLVDDA--------GHFRDAYGLTGGTLVLVRPDG 473 (502)
T ss_pred --chhh-----hhhc--CceEEEecccC--------------CCCceeCCC--------ccHHHHhcCCCCcEEEECCCc
Confidence 2321 1233 46777774321 012355532 689999999999999999999
Q ss_pred eEEEeeCCCCCCChHHHHHHHHHHh
Q 005056 678 HIAWRSKSGVSGNPKLEMEMAFSAV 702 (716)
Q Consensus 678 ~VaWr~~~~~~~~~~~~l~~~~~~~ 702 (716)
|||||... +....|.+.|+++
T Consensus 474 ~v~~~~~~----~~~~~~~~~l~~~ 494 (502)
T PRK06184 474 YVGLIAAG----DDAAALEAYLARV 494 (502)
T ss_pred ceEEEecC----CCHHHHHHHHHHh
Confidence 99999652 2344577777665
No 4
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-60 Score=535.25 Aligned_cols=488 Identities=25% Similarity=0.358 Sum_probs=325.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++|+|+++ |+.+++.+.+.+..... +.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~- 76 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA- 76 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence 48999999999999999999999999999999999988899999999999999999 99999988775543221 11
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
...+. .+.. ... ......+.++|..++++|.+.+++.|+ +|+++++++++++
T Consensus 77 ~~~~~----~~~~---~~~--~~~~~~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 128 (493)
T PRK08244 77 GLDTR----LDFS---ALD--TSSNYTLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ 128 (493)
T ss_pred ccccc----CCcc---cCC--CCCCcEEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence 11110 1110 000 111123568999999999999988877 8999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEE
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 282 (716)
++++|++++... +| ..++++||||+|||++|.||+++|+++.|.......+...+.... ..+...+..+
T Consensus 129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 197 (493)
T PRK08244 129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD-------PPPSSVLSLC 197 (493)
T ss_pred cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC-------CCCcceeEEE
Confidence 999988887632 23 247999999999999999999999998887655444433332211 1112233345
Q ss_pred ecCceEEEEEecCCCCeEEEEEecCC--CCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecCCe
Q 005056 283 NTEAIGVLVAHDLKEGEFILQVPFYP--PQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (716)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~gR 360 (716)
.++...++++.+ ++.+.+.+.... +.......+.+.+.+.+++.++......+......|....+++++|+ +||
T Consensus 198 ~~~g~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~gR 273 (493)
T PRK08244 198 TREGGVMIVPLS--GGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR--SGR 273 (493)
T ss_pred eCCceEEEEECC--CCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc--cCc
Confidence 565554555543 345544332111 11112345677788888888775432222223345666778899998 499
Q ss_pred EEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccccCC
Q 005056 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440 (716)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~g~ 440 (716)
|||+|||||.++|++|||||+||+||+||+|||+++++|++.+.+|++|++||+|+++.++..+......+..
T Consensus 274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~------- 346 (493)
T PRK08244 274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF------- 346 (493)
T ss_pred EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999888765433222100
Q ss_pred CcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccccCc
Q 005056 441 DPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGF 520 (716)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lgy 520 (716)
++. .. .++. .+..+ + . .+. +++.+.. ....+++
T Consensus 347 ~~~-~~----------------~~R~-~~~~~-----------~-~--~~~-------~~~~~~~--------~~~~~~~ 379 (493)
T PRK08244 347 TRP-GL----------------ALRS-MLSDL-----------L-G--FPE-------VNRYLAG--------QISALDV 379 (493)
T ss_pred Cch-hH----------------HHHH-HHHHH-----------h-c--chH-------HHHHHHH--------HHhcCCc
Confidence 000 00 0000 01000 0 0 000 0111100 0124788
Q ss_pred cccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCCCCcceEEEEEcCCccchH
Q 005056 521 RYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVSGDKVEFLLIIAPVEESYH 600 (716)
Q Consensus 521 ~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~~~~~~f~Ll~~~~~~~~~ 600 (716)
+|..++.. + +...||.|+||+||... ++.+++++||++.+ +|+||++.+.. ..
T Consensus 380 ~Y~~~~~~------------~--------~~~~~G~r~p~~~~~~~----~~~~~~l~~~~~~~--~~~ll~~~~~~-~~ 432 (493)
T PRK08244 380 HYEPDAEM------------P--------PHPLNGKRLPDLELTLS----DGESERLYSLLHKG--TFLLLSFGSEP-QD 432 (493)
T ss_pred ccCCCCcc------------C--------CCCCCCCCCCCcceecC----CCCceeHHHhhcCC--eEEEEEecCCc-cc
Confidence 88532110 0 12469999999999641 34558999999864 59999876432 12
Q ss_pred HHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCccchhhhhhccCCCcchhhhhcccCCceEEEcCCceEE
Q 005056 601 LARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIA 680 (716)
Q Consensus 601 ~~~aa~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~Va 680 (716)
|. ...+++++..... |.. ..|. ...+||||||||||
T Consensus 433 ~~---------~~~~~~~~~~~~~---------------------~~~--------~~~~------~~~~~lvRPDg~va 468 (493)
T PRK08244 433 WS---------RYPHVRVVRASLA---------------------EGR--------ADWN------DVHTALIRPDGHVA 468 (493)
T ss_pred cc---------cCCceEEEecccc---------------------ccc--------CccC------CCceEEECCCCceE
Confidence 21 1245665554100 100 1231 12589999999999
Q ss_pred EeeCCCCCCChHHHHHHHHHHhhC
Q 005056 681 WRSKSGVSGNPKLEMEMAFSAVLG 704 (716)
Q Consensus 681 Wr~~~~~~~~~~~~l~~~~~~~~~ 704 (716)
||++.. ..++.+.|.++|.+.+|
T Consensus 469 w~~~~~-~~~~~~~~~~~l~~~~~ 491 (493)
T PRK08244 469 WAVDAS-DPNAEEAIAAGISRWCG 491 (493)
T ss_pred EeecCC-cccchHHHHHHHHHhhC
Confidence 998622 34555678999988775
No 5
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=5.2e-55 Score=499.21 Aligned_cols=523 Identities=25% Similarity=0.329 Sum_probs=338.3
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
+..+||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+... +.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~~ 83 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHG---MRF 83 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCc---eEE
Confidence 4568999999999999999999999999999999999988999999999999999999 999999887755432 222
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
. +..|..+..++...... ........+.|..++++|.+.+.+. ++ +|+++++|++
T Consensus 84 ~-~~~g~~~~~~~~~~~~~----~g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~ 139 (538)
T PRK06183 84 L-DAKGRCLAEIARPSTGE----FGWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA 139 (538)
T ss_pred E-cCCCCEEEEEcCCCCCC----CCCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence 2 23454444333211000 1111235688999999999998875 44 9999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
+++++++|++++... +|+ +++++|||||||||++|.||+++|+.+.+..+...++.+.+..... .......+
T Consensus 140 i~~~~~~v~v~~~~~-~G~--~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 211 (538)
T PRK06183 140 LTQDDDGVTVTLTDA-DGQ--RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIAND-----PLGGPHTY 211 (538)
T ss_pred EEEcCCeEEEEEEcC-CCC--EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccC-----ccCCCceE
Confidence 999999998887632 342 3589999999999999999999999988877766666554322111 11112234
Q ss_pred EEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCC-CHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecC
Q 005056 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (716)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~ 358 (716)
+.++++...++++.+ ++.+.+.+...+.. ..+.+ +++.+.++++... ..+...++.....|.++..++++|+ .
T Consensus 212 ~~~~~~~~~~~~p~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~--~ 285 (538)
T PRK06183 212 QYCDPARPYTSVRLP--HGRRRWEFMLLPGE-TEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWR--S 285 (538)
T ss_pred EEECCCCCEEEEEcC--CCeEEEEEEeCCCC-ChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhc--c
Confidence 455666554444443 23333332222222 22223 4566777776653 2233456666667788888899998 4
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhccccccc
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL 438 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~ 438 (716)
|||||+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|++..+++.+....+.+..-
T Consensus 286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~---- 361 (538)
T PRK06183 286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT---- 361 (538)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC----
Confidence 9999999999999999999999999999999999999999988899999999999999999999887655433210
Q ss_pred CCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005056 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL 518 (716)
Q Consensus 439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l 518 (716)
++ ... .++..++..+. ..|. +++.+.. ....+
T Consensus 362 --~~-~~~----------------~~R~~~l~~~~--------------~~~~-------~~~~~~~--------~~~~~ 393 (538)
T PRK06183 362 --DR-LAA----------------ALRDAVLRALN--------------YLPP-------LKRYVLE--------MRFKP 393 (538)
T ss_pred --CH-HHH----------------HHHHHHHHhhh--------------cCcc-------hhhhhhh--------ccCCC
Confidence 00 000 01111111100 0010 1111110 01235
Q ss_pred CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCCCCcceEEEEEcCCccc
Q 005056 519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVSGDKVEFLLIIAPVEES 598 (716)
Q Consensus 519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~~~~~~f~Ll~~~~~~~ 598 (716)
..+|..+++..... .+...||.|+|+.+|.. ++....++|++-. .+|+||.......
T Consensus 394 ~~~y~~~~~~~~~~----------------~~~~~~G~~~p~~~~~~-----~~~~~~~~d~~~~--~~~~ll~~~~~~~ 450 (538)
T PRK06183 394 MPRLTGGAVVREGE----------------AKHSPVGTLFPQPRVEL-----GGGDRGLLDDVLG--PGFAVLGWGCDPL 450 (538)
T ss_pred CCcccccccccCcc----------------cCCCCcccCcCCCeeEc-----CCCCcccchhccC--CceEEEEecCCch
Confidence 67787776542110 01236999999999975 2233568885432 2599998632211
Q ss_pred hHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCccchhhhhhccCCCcchhhhhcccCCceEEEcCCce
Q 005056 599 YHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDH 678 (716)
Q Consensus 599 ~~~~~aa~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~ 678 (716)
.....++.+..+..+ ..++.+.+.... + ........|. ++...+.++.....+||||||+|
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~---~~~~~~~~d~--------~g~~~~~~~~~~~~~~lvRPD~~ 511 (538)
T PRK06183 451 AGLSDEQRARWRALG--ARFVQVVPAVQA------H---TAQDDHDSDV--------DGALRAWLARHGASAVLLRPDRY 511 (538)
T ss_pred hcCCHHHHHHHHHcC--CeEEEEeccccc------c---cCCCceeecC--------CchHHHHHHhCCCEEEEECCCEE
Confidence 111122223344444 444555322110 0 0011112332 24566667777789999999999
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHhh
Q 005056 679 IAWRSKSGVSGNPKLEMEMAFSAVL 703 (716)
Q Consensus 679 VaWr~~~~~~~~~~~~l~~~~~~~~ 703 (716)
|+++.. + +....|...|...+
T Consensus 512 v~~~~~---~-~~~~~~~~~l~~~~ 532 (538)
T PRK06183 512 VAAAAD---A-QTLGALLAALAALL 532 (538)
T ss_pred EEEeeC---H-HHHHHHHHHHHhhc
Confidence 999864 2 22344555555444
No 6
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-54 Score=486.16 Aligned_cols=341 Identities=23% Similarity=0.326 Sum_probs=247.7
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
.+..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++|+|+++ |+.+++...+.+.... ..
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~--~~ 78 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTS--SV 78 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeE--EE
Confidence 34568999999999999999999999999999999999888899999999999999999 9999998776554322 11
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
+. .+..+...... ...... ........++|..++++|.+++.+.|+ +|+++++|++
T Consensus 79 ~~---~g~~i~~~~~~-~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~~ 134 (487)
T PRK07190 79 WA---NGKFISRQSSW-WEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVVN 134 (487)
T ss_pred ec---CCceEeecccc-CccCCc-CCCCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEE
Confidence 11 22222111000 000000 001123468899999999999998887 9999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecC-ccccccccCCCceE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGML 278 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~-~l~~~~~~~~~~~~ 278 (716)
++++++++++++. +|+ +++|+|||+|||++|.||+++|+++.|......+..+..... ++. ..+...
T Consensus 135 l~~~~~~v~v~~~---~g~----~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~-----~~~~~~ 202 (487)
T PRK07190 135 IELNQAGCLTTLS---NGE----RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFP-----KVPEII 202 (487)
T ss_pred EEEcCCeeEEEEC---CCc----EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCC-----CCcceE
Confidence 9999999877664 342 789999999999999999999999988765444433322211 111 111122
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCce-eEEeeccceechhhhccceec
Q 005056 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCC 357 (716)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~~a~~~~~~ 357 (716)
. +..+....++++. .++.+.+.+.. ....++.+.+.+.+++.+......+ ++...+.|++..+++++|+.
T Consensus 203 ~-~~~~~g~~~~~p~--~~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~- 273 (487)
T PRK07190 203 V-FQAETSDVAWIPR--EGEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI- 273 (487)
T ss_pred E-EEcCCCCEEEEEC--CCCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc-
Confidence 2 2223322333333 22333222221 1245677888888877654322223 34455678899999999973
Q ss_pred CCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
+|||||+|||||.++|++|||||+||+||+||+|||+.+++|++.+.+|++|+.||+|+++.++..+....
T Consensus 274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~ 344 (487)
T PRK07190 274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELV 344 (487)
T ss_pred CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999888775443
No 7
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=3.6e-53 Score=488.21 Aligned_cols=553 Identities=21% Similarity=0.265 Sum_probs=339.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~-Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
..++|||||||||+||++|+.|+++ |++|+||||++.+...++|.+|+++|||+|+++ |+.+++.+.+.+..... .
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~--~ 106 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETA--F 106 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceE--E
Confidence 4579999999999999999999995 999999999999888899999999999999999 99999988776543211 1
Q ss_pred EeecCC-CCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEE
Q 005056 120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (716)
Q Consensus 120 ~~~~~~-g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~ 198 (716)
+..... ...+.+.... .+.....++.+...++|..++++|.+.+.+.+.. ++++++++++
T Consensus 107 ~~~~~~~~~~i~r~~~~--~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~-----------------v~v~~g~~v~ 167 (634)
T PRK08294 107 WKPDPADPSTIVRTGRV--QDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTR-----------------LEPDYGREFV 167 (634)
T ss_pred EcCCCccccceeccccc--cccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCc-----------------eEEEeCcEEE
Confidence 111100 0111111100 0111112233346789999999999999877641 3789999999
Q ss_pred EEEecCC---eEEEEEEecc---CCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccccc
Q 005056 199 SVSATDQ---CINVIASFLK---EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (716)
Q Consensus 199 ~i~~~~~---gv~v~v~~~~---~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~ 272 (716)
+++++++ .|++++++.+ +|+ +++++|||||||||++|.||+++|+++.|......+..+..... ..+ +
T Consensus 168 ~~~~~~~~~~~V~v~l~~~~~~~~g~--~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~--~~~--p 241 (634)
T PRK08294 168 DLEVDEEGEYPVTVTLRRTDGEHEGE--EETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV--TDF--P 241 (634)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCc--eEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc--cCC--C
Confidence 9998753 4888887432 232 46899999999999999999999999998876665544433211 111 1
Q ss_pred CCCceEEEEEecCceEEEEEecCCCCe-EEEEEec--CCCC--CCCCCCCHHHHHHHHHHHcCCCCCce-eEEeecccee
Q 005056 273 ERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPF--YPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVM 346 (716)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~ 346 (716)
.......+...+....++++. ..+. +.+.+.. .++. ......+.+.+.+.++++++....++ ++.....|.+
T Consensus 242 ~~~~~~~~~~~~~g~~~~~P~--~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i 319 (634)
T PRK08294 242 DIRLKCAIQSASEGSILLIPR--EGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEV 319 (634)
T ss_pred CcceEEEEecCCCceEEEEEC--CCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccc
Confidence 101111111123333333333 3332 3332221 1111 12245678888888888876432332 2333445667
Q ss_pred chhhhcccee--------cCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHH
Q 005056 347 HAEVAEKFLC--------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (716)
Q Consensus 347 ~~~~a~~~~~--------~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~ 418 (716)
..+++++|.. ..|||||+|||||.|+|.+|||||+||+||+||+|||+.+++|++.+++|++|+.||+|+++
T Consensus 320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~ 399 (634)
T PRK08294 320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQ 399 (634)
T ss_pred cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 7889999841 14999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHH
Q 005056 419 FNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAK 498 (716)
Q Consensus 419 ~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~ 498 (716)
.+++.+....+.+..-+.. .. . ...+.
T Consensus 400 ~li~~~~~~~~l~~~~~~~-------~~------------~----------------------------------~~~~~ 426 (634)
T PRK08294 400 ELIDFDREWSTMMAAPPKE-------GG------------G----------------------------------VDPAE 426 (634)
T ss_pred HHHHHHHHHHHHhccCCcc-------cc------------c----------------------------------cCHHH
Confidence 9999876655444211100 00 0 00011
Q ss_pred HHHHHHcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeee
Q 005056 499 LRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTL 578 (716)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~ 578 (716)
+.+.+.++.. | ..-++.+|..|.++...... .....-.||.|+|.+.+.+.. ++..+-+.
T Consensus 427 ~~~~~~~~~~----~-~sG~~~~Y~~s~l~~~~~~~------------~~~~~~~~G~r~~~~~v~~~~---d~~~~~l~ 486 (634)
T PRK08294 427 LQDYFVKHGR----F-TAGTATHYAPSLLTGEATHQ------------DLATGFPIGKRFHSAPVIRLA---DAKPVHLG 486 (634)
T ss_pred HHHHHHHhhh----h-hcccCcccCCccccCCCCch------------hhccCCCCceeCCCCceeecc---CCCchhHh
Confidence 1122211110 1 11367889988887432110 011235699999999997632 34455666
Q ss_pred eCCCCCcceEEEEEcCCccc-hHHHHHHHHhhhhc------------------CCceEEEEEcCCC-Ccchhhh-----h
Q 005056 579 DLVSGDKVEFLLIIAPVEES-YHLARAALKVAEDF------------------KVPTKVCVLWPAG-TTNEVEF-----R 633 (716)
Q Consensus 579 Dl~~~~~~~f~Ll~~~~~~~-~~~~~aa~~~a~~~------------------g~~~~~~~~~~~~-~~~~~~~-----~ 633 (716)
|++..+ ..|.||++.+... ..........++.+ +.-+++..|..+. .+.|-.. .
T Consensus 487 ~~~~~~-g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~ 565 (634)
T PRK08294 487 HAATAD-GRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAVIDVRAIFQQPHRELDLEDVPALLL 565 (634)
T ss_pred hhcccC-CCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcEEEEEEEecCCCCccchhhCcHhhC
Confidence 655433 2588888764311 11222222223222 1225555553221 1111110 1
Q ss_pred hccccCCCCccchhhhhhccCCCcchhhhhcccCC--ceEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhh
Q 005056 634 SAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDM--GAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVL 703 (716)
Q Consensus 634 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--gavLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~ 703 (716)
+.+....|.+|..+. ++.. ...+-++.+||..+ +.|+|||||||+|-+. . |....|..-++.++
T Consensus 566 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~gi~~~~g~~vvvRPD~~v~~~~~-l---~~~~~l~~yf~~~~ 631 (634)
T PRK08294 566 PRKGRFGLTDYEKVF-CADL-SGADIFDLRGIDRDRGAVVVVRPDQYVANVLP-L---DAHAELAAFFAGFL 631 (634)
T ss_pred CcccccCccchhhee-cCCC-chhhHHHhhCCCCCceeEEEECCCCceEEEec-C---ccHHHHHHHHHHhc
Confidence 111111222332111 1000 01233456788865 5678899999999875 2 33566777776654
No 8
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-53 Score=474.21 Aligned_cols=332 Identities=25% Similarity=0.358 Sum_probs=243.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~-~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
.++||+||||||+||++|+.|+++|++|+||||.+.+. ..+++..++++++|+|+++ |+.+++.+.+.+.... .+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~~-~~-- 77 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQVT-GF-- 77 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCccccc-ee--
Confidence 45899999999999999999999999999999998765 5678999999999999999 9999998765443210 01
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.. ..++.. .+.. ..| ....+.|..++++|.+.+++.|+ +|+++++++++
T Consensus 78 ----~~---~~~~~~---~~~~-~~~-~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v 126 (488)
T PRK06834 78 ----AA---TRLDIS---DFPT-RHN-YGLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGF 126 (488)
T ss_pred ----ee---Eecccc---cCCC-CCC-ccccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence 00 001100 0000 001 23467899999999999998877 99999999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEE
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
++++++|++++. +|+ +++|||||+|||++|.||+++|+++.|..+.+.++.+.+..... +. ...
T Consensus 127 ~~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~--------~~-~~~ 190 (488)
T PRK06834 127 AQDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE--------PE-WGV 190 (488)
T ss_pred EEcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC--------CC-cce
Confidence 999999887653 342 68999999999999999999999999987766665555432211 00 011
Q ss_pred EEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecCCe
Q 005056 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (716)
Q Consensus 281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~gR 360 (716)
.+.+.....+.+.+ .++.+.+.+.... .......+.+.+.+.+++.++......+......|....+++++|+ +||
T Consensus 191 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~--~gR 266 (488)
T PRK06834 191 HRDALGIHAFGRLE-DEGPVRVMVTEKQ-VGATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYR--DGR 266 (488)
T ss_pred eeCCCceEEEeccC-CCCeEEEEEecCC-CCCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceeccccc--CCc
Confidence 12222211122211 1344433322111 1222345667777788887775433223333456777788999999 599
Q ss_pred EEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
|||+|||||.|+|++|||||+||+||.||+|||+.+++|++.+.+|++|++||+|+++.++..+....
T Consensus 267 V~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~ 334 (488)
T PRK06834 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQV 334 (488)
T ss_pred EEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988775544
No 9
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=2.6e-44 Score=389.58 Aligned_cols=350 Identities=27% Similarity=0.440 Sum_probs=252.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
++||+||||||+||++|+.|+|+|++|+||||++.+...+++..++++++++|+++ |+.+.+.+.+.+........+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence 47999999999999999999999999999999999999999999999999999999 99999988875543333232222
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..+.............+.....+.....+.|..|++.|.+.+++.|+ +++++++++++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~ 139 (356)
T PF01494_consen 80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ 139 (356)
T ss_dssp -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence 11111111110011111111233445678899999999999999887 9999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccc--cceEEEEEecCccccccccCCCceEEE
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~--~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
+.+++++++.+..+|+ .++|+||+||||||++|.||+++++.+.+.... ..++.+.+.. .+..+. .+ .++
T Consensus 140 d~~~~~~~~~~~~~g~--~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~ 211 (356)
T PF01494_consen 140 DDDGVTVVVRDGEDGE--EETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPW---ED--HCF 211 (356)
T ss_dssp ETTEEEEEEEETCTCE--EEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTT---SC--EEE
T ss_pred cccccccccccccCCc--eeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccc---cc--ccc
Confidence 9999998888654553 468999999999999999999999876554432 3444444443 333221 11 444
Q ss_pred EEecCceE-EEEEecC-CCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceec
Q 005056 281 IFNTEAIG-VLVAHDL-KEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC 357 (716)
Q Consensus 281 ~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~ 357 (716)
+..+...+ ++++... ....+++.+++..+. ........+.+.+.+...++......++.....|.+...++++|..
T Consensus 212 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (356)
T PF01494_consen 212 IYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVK- 290 (356)
T ss_dssp EEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEE-
T ss_pred cccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44444443 3444443 123455555554432 2222334555666666666655445566677778888888899984
Q ss_pred CCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHH
Q 005056 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (716)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~ 423 (716)
|||+|+|||||.|+|++|||+|+||+||.+|+++|+.+++|.+.+.+|+.|+++|+++++.+++.
T Consensus 291 -grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 291 -GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp -TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999888999999999999999988764
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.2e-41 Score=373.62 Aligned_cols=341 Identities=24% Similarity=0.326 Sum_probs=252.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC-CCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~-~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
.+||+||||||+||++|+.|+++|++|+||||. ......+++..|+++++++|+++ |+.+.+...+.+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~~---- 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVMV---- 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeEE----
Confidence 479999999999999999999999999999999 45566779999999999999999 998888776654322111
Q ss_pred ecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~ 201 (716)
....+.....++.... ..+.....++|..|...|.+++.+.+. ++++++++|+.++
T Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~~~ 132 (387)
T COG0654 77 VDDGGRRLLIFDAAEL------GRGALGYVVPRSDLLNALLEAARALPN------------------VTLRFGAEVEAVE 132 (387)
T ss_pred EecCCceeEEeccccc------CCCcceEEeEhHHHHHHHHHHHhhCCC------------------cEEEcCceEEEEE
Confidence 1112211111111110 113345688999999999999998763 4999999999999
Q ss_pred ecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcC-CCccccccccceEEEEEecCccccccccCCCceEEE
Q 005056 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 202 ~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lg-i~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
++++.|++++.. +|+ +++|||||||||.+|.||++++ ....+..+.+.++.+.+... .......+.
T Consensus 133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~ 199 (387)
T COG0654 133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE 199 (387)
T ss_pred EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence 999999977763 453 8999999999999999999999 55666577777776665542 123445555
Q ss_pred EEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCC--CCceeEE-eeccceechhhhccceec
Q 005056 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVI-DIKPWVMHAEVAEKFLCC 357 (716)
Q Consensus 281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~-~~~~w~~~~~~a~~~~~~ 357 (716)
.|.+.....+++........++..+ ....+....++++.+.+.+.+.++.. ...+... ....|++....+++|+.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~- 277 (387)
T COG0654 200 RFTHAGPFALLPLPDNRSSVVWSLP-PGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRR- 277 (387)
T ss_pred EecCCCceEEEecCCCceeEEEECC-hhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheec-
Confidence 6666654444444322222333322 12233456677777777788888776 3333333 23356778899999994
Q ss_pred CCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
+||+|+|||||.|+|++|||+|+||+||.+|+|+|++..++..++.+|+.|+++|++.+..++..+....
T Consensus 278 -~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 347 (387)
T COG0654 278 -GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALG 347 (387)
T ss_pred -CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987433389999999999999999998876433
No 11
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1e-41 Score=376.13 Aligned_cols=341 Identities=18% Similarity=0.205 Sum_probs=231.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC------CCCeeeeChhHHHHHHhhhchHHHHHhcC-CCccc
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDL 114 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~------~p~a~~i~~rtmeilr~l~Gl~~~l~~~~-~~~~~ 114 (716)
.++||+||||||+||++|+.|+++|++|+||||++.+.. ..++..|+++++++|+++ |+++++.+.+ .+...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHG 80 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccE
Confidence 358999999999999999999999999999999987543 237788999999999999 9999987653 34332
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeC
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
.. .+.....+. +... ...+ ..+...+.+.|..|+++|.+.+.+.+. ++++++
T Consensus 81 ~~--~~~~~~~~~----~~~~-~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~i~~~ 132 (400)
T PRK08013 81 ME--VWDKDSFGR----IAFD-DQSM---GYSHLGHIIENSVIHYALWQKAQQSSD------------------ITLLAP 132 (400)
T ss_pred EE--EEeCCCCce----EEEc-cccc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEEcC
Confidence 11 111110111 1100 0000 112223568899999999999887632 399999
Q ss_pred cEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCC
Q 005056 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (716)
Q Consensus 195 ~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~ 274 (716)
++|+++++++++|++++. +|+ +++|||||||||++|.||+++++++.+..+.+..+...+.... ..
T Consensus 133 ~~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 198 (400)
T PRK08013 133 AELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-------PH 198 (400)
T ss_pred CeeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-------CC
Confidence 999999999999887764 453 6899999999999999999999988877665555544443211 11
Q ss_pred CceEEEEEecCceEEEEEecCCC-CeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceechhhh
Q 005056 275 PGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVA 351 (716)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~~a 351 (716)
....+..+.++....+++.+.+. ..+++..+ +.. +.....+.+.+.+.+...++......++.. ...|++...++
T Consensus 199 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~ 276 (400)
T PRK08013 199 DAVARQVFHGDGILAFLPLSDPHLCSIVWSLS--PEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYA 276 (400)
T ss_pred CCEEEEEEcCCCCEEEEECCCCCeEEEEEEcC--HHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeec
Confidence 22334444454444444433211 12333222 111 111233445555555544432222333332 22455666778
Q ss_pred ccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHH-cCCC--chhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIA--PASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a--~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
++|+ +|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++ ++.+ ...+|++|+++|++++..++..+....
T Consensus 277 ~~~~--~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 354 (400)
T PRK08013 277 RQFA--AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFR 354 (400)
T ss_pred cccc--CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 5999999999999999999999999999999999999876 3432 235899999999999988877654433
Q ss_pred H
Q 005056 429 R 429 (716)
Q Consensus 429 ~ 429 (716)
+
T Consensus 355 ~ 355 (400)
T PRK08013 355 D 355 (400)
T ss_pred H
Confidence 3
No 12
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=5.1e-40 Score=361.84 Aligned_cols=342 Identities=21% Similarity=0.269 Sum_probs=227.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC--CCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~--~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
++||+||||||+||++|+.|+++|++|+||||++.+ ...+++..++++++++|+++ |+.+++.+.+.+..... +
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGIE---L 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcEE---E
Confidence 489999999999999999999999999999999864 34567888999999999999 99999988776543221 1
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.. .|+ ...++... ...+.....++|..+.+.|++.+.+.|+ +++++++++++
T Consensus 78 ~~--~g~-~~~~~~~~------~~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i 129 (392)
T PRK08243 78 RF--DGR-RHRIDLTE------LTGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL 129 (392)
T ss_pred EE--CCE-EEEecccc------ccCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence 11 232 22222110 0111223456788999999888877776 89999999999
Q ss_pred Ee-cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 201 ~~-~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
++ +++++++++. .+|+ +.+++|||||||||++|.||++++..... .+...+...+... +... .. .....+
T Consensus 130 ~~~~~~~~~V~~~--~~G~--~~~i~ad~vVgADG~~S~vR~~~~~~~~~--~~~~~~~~~~~~~-~~~~-~~-~~~~~~ 200 (392)
T PRK08243 130 HDFDSDRPYVTYE--KDGE--EHRLDCDFIAGCDGFHGVSRASIPAGALR--TFERVYPFGWLGI-LAEA-PP-VSDELI 200 (392)
T ss_pred EecCCCceEEEEE--cCCe--EEEEEeCEEEECCCCCCchhhhcCcchhh--ceecccCceEEEE-eCCC-CC-CCCceE
Confidence 87 6677776663 2453 45899999999999999999999764311 1111110111000 0000 01 111122
Q ss_pred EEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCC----CceeEEeeccceechhhhccce
Q 005056 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL----SDIDVIDIKPWVMHAEVAEKFL 355 (716)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~----~~~~i~~~~~w~~~~~~a~~~~ 355 (716)
+...+....++...+.....+.+.++ .......++++...+.+++.++... ....+.....|++...++++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (392)
T PRK08243 201 YANHERGFALCSMRSPTRSRYYLQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQ 277 (392)
T ss_pred EeeCCCceEEEecCCCCcEEEEEEec---CCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceeccce
Confidence 22222222222222211112333332 1223345566656666666654321 1112222334556667788887
Q ss_pred ecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
.|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++. .+++|++|+++|+|++..+++.+....+.+
T Consensus 278 --~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~-~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~ 350 (392)
T PRK08243 278 --YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG-DTALLDAYSATALRRVWKAERFSWWMTSML 350 (392)
T ss_pred --eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999999999999999999999988763 688999999999999999888887665544
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.4e-40 Score=366.16 Aligned_cols=343 Identities=20% Similarity=0.249 Sum_probs=232.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC-CCC----CCCCCeeeeChhHHHHHHhhhchHHHHHhc-CCCcccc
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAF----STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~-~~~----~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~-~~~~~~~ 115 (716)
..+||+||||||+||++|+.|+++|++|+|||++ +.. ...+++..++++++++|+++ |+++++.+. +.+...+
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIAM 81 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccEE
Confidence 4689999999999999999999999999999997 322 12468899999999999999 999999764 4443221
Q ss_pred ceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 116 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
. ++.. .+ +....... ... ..+.....+.+..|.+.|.+++.+.+. +++++++
T Consensus 82 ~--~~~~--~~--~~~~~~~~-~~~---~~~~~g~~~~~~~l~~~L~~~~~~~~~------------------v~v~~~~ 133 (405)
T PRK08850 82 E--VWEQ--DS--FARIEFDA-ESM---AQPDLGHIVENRVIQLALLEQVQKQDN------------------VTLLMPA 133 (405)
T ss_pred E--EEeC--CC--CceEEEec-ccc---CCCccEEEEEHHHHHHHHHHHHhcCCC------------------eEEEcCC
Confidence 1 1111 11 11111100 000 111112346788899999998876532 3899999
Q ss_pred EEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 196 ~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
+|++++++++++++++. +|+ +++||+||+|||++|.||++++++..+..+.+..+...+.... ...
T Consensus 134 ~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~ 199 (405)
T PRK08850 134 RCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-------PHN 199 (405)
T ss_pred eeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-------CCC
Confidence 99999998888877764 453 6899999999999999999999988766554444444443221 122
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEEecCCC-CCCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceechhhhcc
Q 005056 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPP-QQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (716)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~~a~~ 353 (716)
...+.+|.++....+++... .+.+.+.....+. .+.+...+++.+.+.+.+.++.....+++.. ...|++....+++
T Consensus 200 ~~~~~~~~~~g~~~~lp~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 278 (405)
T PRK08850 200 SVARQIFTPQGPLAFLPMSE-PNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARD 278 (405)
T ss_pred CEEEEEEcCCCceEEEECCC-CCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeeccc
Confidence 34455666655444554432 1233222111111 1112234445555555555543322333322 2235566677888
Q ss_pred ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc-CC--CchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005056 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFRA 430 (716)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~--a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (716)
|. ++||+|+|||||.++|++|||||+||+||.+|+|+|+.+.+ +. +.+.+|++|+++|++++..++..+....+.
T Consensus 279 ~~--~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~ 356 (405)
T PRK08850 279 FV--RERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDL 356 (405)
T ss_pred cc--cCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88 59999999999999999999999999999999999998773 32 346899999999999999988877544443
No 14
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=5.4e-40 Score=366.21 Aligned_cols=343 Identities=21% Similarity=0.265 Sum_probs=234.1
Q ss_pred CCEEEECCCHHHHHHHHHHHh----CCCCEEEECCCCCCCC------------CCCeeeeChhHHHHHHhhhchHHHHHh
Q 005056 44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER 107 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar----~Gi~v~liEr~~~~~~------------~p~a~~i~~rtmeilr~l~Gl~~~l~~ 107 (716)
+||+||||||+||++|+.|++ +|++|+||||++.+.. .+++..|+++++++|+++ |+++++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence 689999999999999999999 8999999999654432 358999999999999999 99999976
Q ss_pred cC-CCccccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeeccccccccccccc
Q 005056 108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL 186 (716)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~ 186 (716)
.. .+...+ .+. +..+.....++.. . ..+...+.++|..|+..|.+.+.+.+.
T Consensus 80 ~~~~~~~~~---~~~-~~~~~~~~~~~~~---~----~~~~~~~~i~~~~l~~~L~~~~~~~~~---------------- 132 (437)
T TIGR01989 80 DRIQPFGRM---QVW-DGCSLALIRFDRD---N----GKEDMACIIENDNIQNSLYNRLQEYNG---------------- 132 (437)
T ss_pred hcCCceeeE---EEe-cCCCCceEEeecC---C----CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence 54 333221 111 1112111111110 0 011224568899999999999887651
Q ss_pred ccceEEeCcEEEEEEec-------CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEE
Q 005056 187 QGREILMGHECVSVSAT-------DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259 (716)
Q Consensus 187 ~~~~v~~g~~v~~i~~~-------~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i 259 (716)
.+++++++++|++++++ +++|++++. +|+ +++|||||||||++|.||+++|+++.+..+.+..+..
T Consensus 133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~ 205 (437)
T TIGR01989 133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA 205 (437)
T ss_pred CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence 01399999999999752 456666553 453 7999999999999999999999999988777766555
Q ss_pred EEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcC---------
Q 005056 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG--------- 330 (716)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g--------- 330 (716)
.+.... ...+...+..|.+++...+++.......+++..+. .........+++.+.+.+.+.++
T Consensus 206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 278 (437)
T TIGR01989 206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSP-EEALRLLSLPPEDFVDALNAAFDLGYSDHPYS 278 (437)
T ss_pred EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCH-HHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence 443211 11233445556666555555543222233333221 00111223455666665655441
Q ss_pred ---------------CCC--------Cc---eeEE--eeccceechhhhccceecCCeEEEEccCCccCCCCCCccchhh
Q 005056 331 ---------------WEL--------SD---IDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382 (716)
Q Consensus 331 ---------------~~~--------~~---~~i~--~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~g 382 (716)
... .. .++. ....|++....+++|. .+||+|+|||||.++|.+|||||+|
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~l~GDAAH~~~P~~GqG~n~~ 356 (437)
T TIGR01989 279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYV--TKRVALVGDAAHRVHPLAGQGVNLG 356 (437)
T ss_pred cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhcc--CCCEEEEchhhcCCCCChhhhHHHH
Confidence 100 00 1111 1134566777888988 4999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHcCC---CchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005056 383 VQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALSVQNFRA 430 (716)
Q Consensus 383 i~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (716)
|+||.+|+|+|++++++. +.+.+|++|+++|+++++.++..+....+.
T Consensus 357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l 407 (437)
T TIGR01989 357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKL 407 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987543 235799999999999999998877655443
No 15
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=4.3e-39 Score=354.21 Aligned_cols=346 Identities=19% Similarity=0.223 Sum_probs=226.8
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
++.++||+||||||+||++|+.|+++|++|+||||++.+...+++..|+++++++|+++ |+.+.+.+.+.... ..+.
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~--~~~~ 78 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRR--DAMR 78 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhcccccc--cceE
Confidence 34568999999999999999999999999999999999887778888999999999999 99999987654321 1111
Q ss_pred EeecCCCCceeeccCCCccccccccCCc-cccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~ 198 (716)
.. ..|+.+...+.... .+. ....++|..|+++|.+++...+. ++++++++++
T Consensus 79 ~~--~~g~~~~~~~~~~~-------~~~g~~~~i~r~~l~~~L~~~~~~~~g------------------v~i~~~~~v~ 131 (388)
T PRK07045 79 LY--HDKELIASLDYRSA-------SALGYFILIPCEQLRRLLLAKLDGLPN------------------VRLRFETSIE 131 (388)
T ss_pred Ee--cCCcEEEEecCCcc-------ccCCceEEccHHHHHHHHHHHHhcCCC------------------eeEEeCCEEE
Confidence 11 23444433322110 011 12457899999999998865432 4999999999
Q ss_pred EEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhh-cCCCccccccccceEEEEEecCccccccccCCCce
Q 005056 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL-VGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (716)
Q Consensus 199 ~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~-lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 277 (716)
+++++++++.+.+.+. +|+ ++++|+||||||++|.||++ ++++..+..+........+.... .. +..
T Consensus 132 ~i~~~~~~~~~~v~~~-~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~ 199 (388)
T PRK07045 132 RIERDADGTVTSVTLS-DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTD---SV----REC 199 (388)
T ss_pred EEEECCCCcEEEEEeC-CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccC---Cc----ccc
Confidence 9999877754445432 453 68999999999999999996 45554333332222222221111 00 111
Q ss_pred EEEEEec-CceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCc-eeEE-eec---cceechhhh
Q 005056 278 LFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEVA 351 (716)
Q Consensus 278 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-~~i~-~~~---~w~~~~~~a 351 (716)
...++.+ ....++++.......+++.++.........+.+.+.+.+.+.+.++....+ ++.. ... .+++....+
T Consensus 200 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
T PRK07045 200 NRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNL 279 (388)
T ss_pred ceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCcccc
Confidence 1122333 222233333222122333333211111122344555666666655432211 1111 111 124455567
Q ss_pred ccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
++|. .|||+|+|||||.|+|++|||+|+||+||++|+|+|+.++++. ..+.+|++|+++|+|++..++..+....+
T Consensus 280 ~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 356 (388)
T PRK07045 280 DRYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALAT 356 (388)
T ss_pred cccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence 7887 4999999999999999999999999999999999999887654 45789999999999999988887764443
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.8e-39 Score=352.54 Aligned_cols=328 Identities=17% Similarity=0.222 Sum_probs=229.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC----CCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~----~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
+||+||||||+|+++|+.|++.|++|+||||.+.. ...+++..++++++++|+++ |+++.+.+.+.+...+ .
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---~ 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDI---Y 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEE---E
Confidence 68999999999999999999999999999998532 23478999999999999999 9999997766554322 1
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
. .+..|.....++.. ..+...+.+.|..|++.|.+++.+.+. +++++++++++
T Consensus 78 ~-~~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~ 130 (374)
T PRK06617 78 V-VDNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE 130 (374)
T ss_pred E-EECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence 1 12234333322211 111124578899999999999988763 38999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
+.+++++|++++. ++ +++||+||||||.+|.||+.++++..+..+ +..+.+..... .......+
T Consensus 131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~ 194 (374)
T PRK06617 131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM 194 (374)
T ss_pred EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence 9999998877653 33 689999999999999999999887655544 44444433221 11222344
Q ss_pred EEEecCceEEEEEecCCCCe---EEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceechhhhccc
Q 005056 280 FIFNTEAIGVLVAHDLKEGE---FILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKF 354 (716)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~~a~~~ 354 (716)
..|.+.+..++++.. ++. +++..+ +.. ......+++.+.+++...++.....+.+.. ...|++....+++|
T Consensus 195 ~~~~~~g~~~~lPl~--~~~~~~~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 270 (374)
T PRK06617 195 EHFLPLGPFALLPLK--DQYASSVIWSTS--SDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRY 270 (374)
T ss_pred EEecCCCCEEEeECC--CCCeEEEEEeCC--HHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeeccce
Confidence 455555544444443 332 222221 111 112233445555566655554333333322 45577777788999
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
. +|||+|+|||||.++|++|||+|+||+||.+|++.|. ...+|++|+++|++....++..+....+.+
T Consensus 271 ~--~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~-------~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f 338 (374)
T PRK06617 271 F--HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVS-------NNGTLQEYQKLRQEDNFIMYKLTDELNNIF 338 (374)
T ss_pred e--cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHc-------CcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8 5999999999999999999999999999999999883 136899999999999999888776554433
No 17
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3e-39 Score=354.75 Aligned_cols=336 Identities=18% Similarity=0.243 Sum_probs=230.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC--C----CCCeeeeChhHHHHHHhhhchHHHHHhc-CCCcccc
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~--~----~p~a~~i~~rtmeilr~l~Gl~~~l~~~-~~~~~~~ 115 (716)
.+||+||||||+||++|+.|++.|++|+||||.+... . ..++..++++++++|+++ |+++.+.+. ..+...+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL 81 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence 4799999999999999999999999999999886321 1 235678999999999999 999998763 3333221
Q ss_pred ceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 116 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
. .+... ... ..+.. .++ ..+...+.+.+..|...|.+++.+.+. +++++++
T Consensus 82 ~--~~~~~--~~~-~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------i~i~~~~ 132 (384)
T PRK08849 82 E--TWEHP--ECR-TRFHS---DEL---NLDQLGYIVENRLIQLGLWQQFAQYPN------------------LTLMCPE 132 (384)
T ss_pred E--EEeCC--Cce-EEecc---ccc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------eEEECCC
Confidence 1 11110 000 01110 000 001112345667788899888876532 4899999
Q ss_pred EEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 196 ~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
+|++++++++++++++. +|+ +++||+||+|||.+|.||+++++...+..+.+..+.+.+... ....
T Consensus 133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~ 198 (384)
T PRK08849 133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ 198 (384)
T ss_pred ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence 99999999999887765 453 789999999999999999999988776666555444433321 1122
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccc
Q 005056 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF 354 (716)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~ 354 (716)
...+..|.+.....+++.......+++..+ +.. ......+++...+.+.+.++.....+++.....|++....+++|
T Consensus 199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 276 (384)
T PRK08849 199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDS--PKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQY 276 (384)
T ss_pred CEEEEEeCCCCCEEEeEcCCCceEEEEECC--HHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchh
Confidence 334444555444444444333233333221 110 11123456666666666666554455555555677777788999
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
. +|||+|+|||||.|+|++|||+|+||+||.+|+..|.. ++...+.+|+.|+++|+++...++..+....
T Consensus 277 ~--~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~ 346 (384)
T PRK08849 277 V--KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLFY 346 (384)
T ss_pred c--cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8 59999999999999999999999999999999998864 3445688999999999999988766554333
No 18
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=6e-39 Score=355.12 Aligned_cols=343 Identities=17% Similarity=0.207 Sum_probs=232.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC--------CCCCCeeeeChhHHHHHHhhhchHHHHHhc-CCCcc
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~--------~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~-~~~~~ 113 (716)
.+||+||||||+||++|+.|+++|++|+||||.+.. ...+++..++++++++|+++ |+++.+.+. ..+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence 479999999999999999999999999999998731 23467888999999999999 999998754 33332
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEe
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~ 193 (716)
. +.. .+..+.....++. ... ..+.....+.+..|.+.|.+.+.+.++ ++++
T Consensus 81 ~---~~~-~~~~~~~~~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~ 131 (405)
T PRK05714 81 E---MQV-WDGSGTGQIHFSA---ASV---HAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA 131 (405)
T ss_pred e---EEE-EcCCCCceEEecc---ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence 1 111 1222221111110 000 112223467788999999999888776 8999
Q ss_pred CcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccC
Q 005056 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (716)
Q Consensus 194 g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~ 273 (716)
++++++++++++++++++. +|+ +++||+||+|||++|.||+.++++..+..+....+...+... ..
T Consensus 132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~ 197 (405)
T PRK05714 132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP 197 (405)
T ss_pred CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence 9999999999998877654 443 689999999999999999999988766555544443333221 11
Q ss_pred CCceEEEEEecCceEEEEEecCCC-CeEEEEEecCCCC--CCCCCCCHHHHHHHHHHHcCCCCCce-eEEeeccceechh
Q 005056 274 RPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAE 349 (716)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~ 349 (716)
.....+..+.+.....+++..... ..|.......++. +.....+.+.+.+.+.+.++.....+ .......|++...
T Consensus 198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (405)
T PRK05714 198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR 277 (405)
T ss_pred CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee
Confidence 223344455565554555443221 2232111111111 11122344445555555444322222 1122234666667
Q ss_pred hhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHH-cC--CCchhHHHHHHHHHhHHHHHHHHHHHH
Q 005056 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KD--IAPASILNTYETERKPIAEFNTALSVQ 426 (716)
Q Consensus 350 ~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g--~a~~~lL~sY~~eRrp~a~~~~~~s~~ 426 (716)
.+++|. +|||+|+|||||.|+|++|||+|+||+||.+|+|+|+... .| .+.+.+|+.|+++|+++...++..+..
T Consensus 278 ~~~~~~--~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~ 355 (405)
T PRK05714 278 HAKRYV--EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEG 355 (405)
T ss_pred ehhhhc--cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788998 5999999999999999999999999999999999998765 34 345689999999999999999998876
Q ss_pred HHHHh
Q 005056 427 NFRAA 431 (716)
Q Consensus 427 ~~~~~ 431 (716)
+.+.+
T Consensus 356 ~~~~~ 360 (405)
T PRK05714 356 FERLF 360 (405)
T ss_pred HHHHH
Confidence 55544
No 19
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=5e-39 Score=353.78 Aligned_cols=341 Identities=20% Similarity=0.307 Sum_probs=236.4
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccce
Q 005056 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK 117 (716)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~ 117 (716)
.|++..+||+||||||+||++|+.|+++|++|+||||++.+. .+++..++++++++|+++ |+++.+...+.+....
T Consensus 2 ~~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~~-- 77 (388)
T PRK07494 2 LMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERL-GLWARLAPHAAPLQSM-- 77 (388)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHh-CchhhhHhhcceeeEE--
Confidence 355677999999999999999999999999999999998664 367888999999999999 9999998766554322
Q ss_pred eEEeecCCCCceee--ccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 118 FIYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 118 ~~~~~~~~g~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
.+. +..|..+.. .. ....+. ......+.+++..+++.|.+.+.+.+. +. ++++
T Consensus 78 -~~~-~~~g~~~~~~~~~-~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------~~-~~~~ 132 (388)
T PRK07494 78 -RIV-DATGRLIRAPEVR-FRAAEI---GEDAFGYNIPNWLLNRALEARVAELPN------------------IT-RFGD 132 (388)
T ss_pred -EEE-eCCCCCCCCceEE-EcHHhc---CCCccEEEeEhHHHHHHHHHHHhcCCC------------------cE-EECC
Confidence 111 122322110 00 000000 011123468899999999999988764 24 8899
Q ss_pred EEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 196 ~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
+|++++++++++++++. +|+ +++||+||+|||.+|.+|+.++++..+..+.+..+.+.+... . ...
T Consensus 133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~------~~~ 198 (388)
T PRK07494 133 EAESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-R------PHQ 198 (388)
T ss_pred eeEEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-C------CCC
Confidence 99999999998877653 443 689999999999999999999998876666555555444321 1 112
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEE-eeccceechhhhcc
Q 005056 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK 353 (716)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~~a~~ 353 (716)
...+.++.+.+..++++.+ ++.+.+.....++. ......+++.+.+.+++.++.....++.. ....|++....+++
T Consensus 199 ~~~~~~~~~~g~~~~~Pl~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 276 (388)
T PRK07494 199 NVSTEFHTEGGPFTQVPLP--GRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHR 276 (388)
T ss_pred CEEEEEeCCCCcEEEEECC--CCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHh
Confidence 2334444455444444443 23332222111111 11234455666665555544322233222 23457788888889
Q ss_pred ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHH
Q 005056 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (716)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (716)
|. .+||+|+|||||.++|++|||||+||+||.+|+|+|.....+.+...+|++|+++|+|....++..+.
T Consensus 277 ~~--~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 346 (388)
T PRK07494 277 FA--AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVD 346 (388)
T ss_pred hc--cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 49999999999999999999999999999999999998655666789999999999999877765443
No 20
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.4e-38 Score=353.37 Aligned_cols=347 Identities=21% Similarity=0.243 Sum_probs=230.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~--~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
.++||+||||||+||++|+.|+++|++|+||||++.+.. .+++..++++++++|+++ |+++++...+.+... +.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~ 92 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQ---IR 92 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccE---EE
Confidence 458999999999999999999999999999999987643 467889999999999999 999999876655432 11
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
+ .+..+.....+... +.. .....+...+..|.+.|.+++.+.+. +++++++++++
T Consensus 93 ~-~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~~ 147 (415)
T PRK07364 93 L-SDADYPGVVKFQPT---DLG---TEALGYVGEHQVLLEALQEFLQSCPN------------------ITWLCPAEVVS 147 (415)
T ss_pred E-EeCCCCceeeeccc---cCC---CCccEEEEecHHHHHHHHHHHhcCCC------------------cEEEcCCeeEE
Confidence 1 12222221111110 000 00011122334678888888877532 38999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
++++++++++++.. ++. +.+++||+||+|||.+|.||+.+++...+..+++..+.+.+..... .....+
T Consensus 148 v~~~~~~~~v~~~~--~~~--~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 216 (415)
T PRK07364 148 VEYQQDAATVTLEI--EGK--QQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAP-------HNDIAY 216 (415)
T ss_pred EEecCCeeEEEEcc--CCc--ceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCC-------CCCEEE
Confidence 99998988877652 222 2479999999999999999999999887776666655554433210 111122
Q ss_pred EEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEE-eeccceechhhhccceecC
Q 005056 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCCY 358 (716)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~~a~~~~~~~ 358 (716)
..+.+....++++.+.....+++..+.. ........+.+...+.+++.++.....++.. ....|++....+++|. +
T Consensus 217 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (415)
T PRK07364 217 ERFWPSGPFAILPLPGNRCQIVWTAPHA-QAKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV--Q 293 (415)
T ss_pred EEecCCCCeEEeECCCCCEEEEEECCHH-HHHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--C
Confidence 2222333334444432222233222210 0011223444555555555554332233322 2234556666778887 5
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc-C--CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
|||+|+|||||.++|++|||||+||+||++|+|+|...++ + .....+|+.|+++|++++..++..+....+.+
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 369 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF 369 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763 2 22358999999999999998887776544433
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=2.4e-38 Score=348.78 Aligned_cols=335 Identities=15% Similarity=0.215 Sum_probs=227.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC-----CCCCeeeeChhHHHHHHhhhchHHHHHhc-CCCccc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~-----~~p~a~~i~~rtmeilr~l~Gl~~~l~~~-~~~~~~ 114 (716)
+..+||+||||||+|+++|+.|+++|++|+||||++.+. ...++..++++++++|+++ |+++.+.+. ..+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~- 81 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYR- 81 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCccc-
Confidence 556899999999999999999999999999999987543 2246678999999999999 999998764 33332
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeC
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
.+.... ..+.....++.. .. ..+...+.+++..|.+.|.+.+++.|+ +++++
T Consensus 82 --~~~~~~-~~~~~~~~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~ 133 (392)
T PRK08773 82 --RMRVWD-AGGGGELGFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP 133 (392)
T ss_pred --EEEEEe-CCCCceEEechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence 111111 111111111110 00 011123467889999999999988877 89999
Q ss_pred cEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCC
Q 005056 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (716)
Q Consensus 195 ~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~ 274 (716)
++|++++++++++++++. +|+ ++++|+||+|||.+|.+|+.+|++..+..+....+...+.. +. ..
T Consensus 134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~~------~~ 199 (392)
T PRK08773 134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDT-EH------PH 199 (392)
T ss_pred CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEc-cC------CC
Confidence 999999998888876653 443 68999999999999999999998876544443333333222 11 11
Q ss_pred CceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceechhhhcc
Q 005056 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (716)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~~a~~ 353 (716)
+...+..+.++....+++.+.....+++.++.. ..+....++.+.+.+.+.+.++.....++... ...|++...++++
T Consensus 200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (392)
T PRK08773 200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDA-EAERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ 278 (392)
T ss_pred CCEEEEEeCCCCcEEEEECCCCceEEEEECCHH-HHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence 233444455555545555543322333333211 11112234555555555555543333343322 2346666778899
Q ss_pred ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHhHHHHHHHH
Q 005056 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTA 422 (716)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~ 422 (716)
|. .+||+|+|||||.++|++|||+|+||+||.+|+++|.+.++ +++...+|++|+++|++....+..
T Consensus 279 ~~--~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~ 348 (392)
T PRK08773 279 YV--SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAY 348 (392)
T ss_pred hc--CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 98 49999999999999999999999999999999999998763 445678999999999999764443
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.1e-38 Score=349.29 Aligned_cols=341 Identities=21% Similarity=0.260 Sum_probs=230.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCCC--CCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~~--~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
+||+||||||+||++|+.|+++| ++|+||||++... ..+++..++++++++|+++ |+++.+...+.+... ..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~---~~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITD---MV 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccE---EE
Confidence 79999999999999999999996 9999999998643 3579999999999999999 999999877765532 12
Q ss_pred EeecCCCCceee--ccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEE
Q 005056 120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (716)
Q Consensus 120 ~~~~~~g~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v 197 (716)
+.....+..... ..... ... ........+.|..|++.|.+.+.+.|+ +++++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v 134 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEG--EVE--PGEPFAHMVENRVLINALRKRAEALGI-------------------DLREATSV 134 (403)
T ss_pred EEeCCCCCCCccceEEecc--ccc--CCCccEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence 221111111100 00000 000 001112467899999999999988877 99999999
Q ss_pred EEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCce
Q 005056 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (716)
Q Consensus 198 ~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 277 (716)
++++++++++++++. +|+ +++||+||+|||.+|.+|+.+|+...+..+....+.+.+.... . ....
T Consensus 135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 200 (403)
T PRK07333 135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER------P-HGGR 200 (403)
T ss_pred EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC------C-CCCE
Confidence 999998888776653 443 6899999999999999999999876554443333333222111 0 1122
Q ss_pred EEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceechhhhccce
Q 005056 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFL 355 (716)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~~a~~~~ 355 (716)
....+.++...++++.+ ++...+........ ......+.+...+.+++.++.....+.... ...|.+....+++|.
T Consensus 201 ~~~~~~~~g~~~~~Pl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (403)
T PRK07333 201 AEEHFLPAGPFAILPLK--GNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFV 278 (403)
T ss_pred EEEEeCCCCceEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhcc
Confidence 23334454444444443 33333222111100 011122333444445555554333333321 224666667888888
Q ss_pred ecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcC---CCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g---~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
.|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++. .+.+.+|++|+++|+++...++..+....+
T Consensus 279 --~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 353 (403)
T PRK07333 279 --APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR 353 (403)
T ss_pred --CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999988752 346899999999999999988877654443
No 23
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-38 Score=345.37 Aligned_cols=344 Identities=16% Similarity=0.188 Sum_probs=234.3
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC----CCEEEECCCCCC--CCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCc
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPV 112 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~G----i~v~liEr~~~~--~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~ 112 (716)
|..+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+ ...+++..++++++++|+++ |+++. .+.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~---~~~~~ 82 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPA---DATPI 82 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchh---cCCcc
Confidence 5566689999999999999999999997 479999998644 34568999999999999999 99885 22232
Q ss_pred cccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEE
Q 005056 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192 (716)
Q Consensus 113 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~ 192 (716)
.... ++.....|...... .++ ..|...+.+++..|++.|.+++.+.++ +++
T Consensus 83 ~~~~--~~~~~~~g~~~~~~-----~~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~~ 133 (398)
T PRK06996 83 EHIH--VSQRGHFGRTLIDR-----DDH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RWL 133 (398)
T ss_pred cEEE--EecCCCCceEEecc-----ccc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEE
Confidence 2110 11001112211111 111 122234578899999999999998876 899
Q ss_pred eCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCC-ChhhhhhcCCCccccccccceEEEEEecCccccccc
Q 005056 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (716)
Q Consensus 193 ~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~-~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~ 271 (716)
++++++++++++++|++++. ++++ ..+++|||||+|||. +|.+|+.+++...+..+.+..+...+....
T Consensus 134 ~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~------ 203 (398)
T PRK06996 134 TSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA------ 203 (398)
T ss_pred cCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC------
Confidence 99999999999999887764 2221 247999999999997 588899998887766665555444333211
Q ss_pred cCCCceEEEEEecCceEEEEEecCCCCe-EEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEEe-eccceech
Q 005056 272 NERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHA 348 (716)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~ 348 (716)
..+...+..+.+.+...+++.+..... +.+.....+.. .....++.+...+.+.+.++.....+.... ...|++..
T Consensus 204 -~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (398)
T PRK06996 204 -PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLGL 282 (398)
T ss_pred -CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeeec
Confidence 112233434445444444444322111 33222211111 112345555666667777665444443322 22466677
Q ss_pred hhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005056 349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (716)
Q Consensus 349 ~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (716)
..+++|. .|||+|+|||||.++|++|||||+||+||.+|||+|+. ++. .+.+|++|+++|+++...++..+....
T Consensus 283 ~~~~~~~--~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~~-~~~~L~~Y~~~R~~~~~~~~~~s~~l~ 357 (398)
T PRK06996 283 NAARTLV--NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HGA-TPLALATFAARRALDRRVTIGATDLLP 357 (398)
T ss_pred cccccee--cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888 59999999999999999999999999999999999975 332 567899999999999999988877655
Q ss_pred HHh
Q 005056 429 RAA 431 (716)
Q Consensus 429 ~~~ 431 (716)
+.+
T Consensus 358 ~~~ 360 (398)
T PRK06996 358 RLF 360 (398)
T ss_pred HHH
Confidence 443
No 24
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=8.9e-38 Score=343.11 Aligned_cols=338 Identities=22% Similarity=0.305 Sum_probs=230.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCCCC----CCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~~~----p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
||+||||||+||++|+.|+++| ++|+||||.+.+... +++..++++++++|+++ |+.+.+...+.+...+ .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~---~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILDI---H 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccceE---E
Confidence 7999999999999999999999 999999999877554 57899999999999999 9999997776554321 1
Q ss_pred Eeec-CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcEE
Q 005056 120 YCTS-VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC 197 (716)
Q Consensus 120 ~~~~-~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~v 197 (716)
+... ..+... .. ..++ ..+...+.++|..|.+.|.+.+.+. |+ +++++++|
T Consensus 77 ~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v 129 (382)
T TIGR01984 77 VSDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARY 129 (382)
T ss_pred EEcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeE
Confidence 1110 011111 00 0011 1122235688999999999999874 66 99999999
Q ss_pred EEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCce
Q 005056 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (716)
Q Consensus 198 ~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 277 (716)
++++++++++++++. +|+ +++||+||+|||.+|.||+.++++.....+.+..+...+.... . ....
T Consensus 130 ~~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 195 (382)
T TIGR01984 130 KEIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ------P-HQGC 195 (382)
T ss_pred EEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC------C-CCCE
Confidence 999998888877653 443 6899999999999999999998876544332333332222111 0 1112
Q ss_pred EEEEEecCceEEEEEecCCCC-eEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeE-Eeeccceechhhhccc
Q 005056 278 LFFIFNTEAIGVLVAHDLKEG-EFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKF 354 (716)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~~a~~~ 354 (716)
.+..+.++....+++.+ ++ .+.+.+...... +...+.+.+.+.+.+.+.++.....+.. .....|.+....+++|
T Consensus 196 ~~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (382)
T TIGR01984 196 AFERFTPHGPLALLPLK--DNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETH 273 (382)
T ss_pred EEEeeCCCCCeEECcCC--CCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhe
Confidence 22333443333334333 23 333322221110 1122345555555555555543222222 1234466666778888
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
. .+||+|+|||||.|+|++|||||+||+||.+|+|+|+.+..+...+.+|+.|+++|+++...++..+....+.+
T Consensus 274 ~--~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~ 348 (382)
T TIGR01984 274 V--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLF 348 (382)
T ss_pred e--cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 49999999999999999999999999999999999998765556689999999999999999888876554433
No 25
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.9e-37 Score=341.60 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=226.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC------CCCCeeeeChhHHHHHHhhhchHHHHHhc-CCCcc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS------THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~------~~p~a~~i~~rtmeilr~l~Gl~~~l~~~-~~~~~ 113 (716)
...+||+||||||+||++|+.|+++|++|+|||+.+... ...++..++++++++|+++ |+++.+.+. ..+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~ 81 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPYR 81 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCcccc
Confidence 456899999999999999999999999999999986432 2346789999999999999 999988763 22322
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEE
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL 192 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~ 192 (716)
.. .......+.... +. .+. ..+...+.++|..|++.|.+++.+. ++ +++
T Consensus 82 ~~---~~~~~~~~~~~~--~~---~~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i~ 131 (391)
T PRK08020 82 RL---ETWEWETAHVVF--DA---AEL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TLR 131 (391)
T ss_pred eE---EEEeCCCCeEEe--cc---ccc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EEE
Confidence 11 111111121111 10 000 1122235688999999999998776 55 899
Q ss_pred eCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccccc
Q 005056 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (716)
Q Consensus 193 ~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~ 272 (716)
+++++++++++++++++++. +|+ +++||+||+|||.+|.||+.++++..+..+.+..+.+.+....
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~------- 197 (391)
T PRK08020 132 CPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN------- 197 (391)
T ss_pred cCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-------
Confidence 99999999988888776653 443 6899999999999999999999887766555544444333211
Q ss_pred CCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC--CCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhh
Q 005056 273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV 350 (716)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~ 350 (716)
......+..+.++....+++.... ...+++ +..+. ..+...+.+.+.+.+.+.++.....+.......|++....
T Consensus 198 ~~~~~~~~~~~~~g~~~~~p~~~~-~~~~v~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~ 274 (391)
T PRK08020 198 PPGDSTWQQFTPSGPRAFLPLFDN-WASLVW--YDSPARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRH 274 (391)
T ss_pred CCCCEEEEEEcCCCCEEEeECCCC-cEEEEE--ECCHHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceee
Confidence 112233433444444444443311 111212 11111 1112334455555555554433334444455567777677
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHhHHHHHHHHHHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSV 425 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (716)
+++|. .+||+|+|||||.++|++|||+|+||+||.+|+|+|++..+ ++....+|++|+++|++....++..+.
T Consensus 275 ~~~~~--~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 350 (391)
T PRK08020 275 ALQYV--QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMD 350 (391)
T ss_pred hhhhc--cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88898 49999999999999999999999999999999999998753 334578999999999998766555443
No 26
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=7.5e-37 Score=335.96 Aligned_cols=339 Identities=20% Similarity=0.247 Sum_probs=215.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC--CCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~--~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
.+||+||||||+||++|+.|+++|++|+||||++.+. ...++..++++++++|+++ ||++++...+.+...+. +
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---~ 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTE---I 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceE---E
Confidence 4799999999999999999999999999999998642 3457888999999999999 99999988775543221 1
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.. .+ .....+.... ........+.|..|.+.|.+.+.+.|+ .++++++++.+
T Consensus 78 ~~--~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~ 129 (390)
T TIGR02360 78 AF--DG-QRFRIDLKAL------TGGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL 129 (390)
T ss_pred ee--CC-EEEEEecccc------CCCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence 11 12 1222221110 011111234678899999998887776 88999999888
Q ss_pred Ee-cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCcccc--ccc-cceEEEEEecCccccccccCCCc
Q 005056 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG 276 (716)
Q Consensus 201 ~~-~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~-~~~~~i~~~~~~l~~~~~~~~~~ 276 (716)
.+ +++.+.|++. .+|+ +.++++|+||||||.+|.||++++...... ..+ ..+..+.. ... . ...
T Consensus 130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~----~-~~~ 197 (390)
T TIGR02360 130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETP----P-VSH 197 (390)
T ss_pred EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEec---CCC----C-CCC
Confidence 65 5566666663 2443 357999999999999999999986432100 001 11111111 100 0 011
Q ss_pred eEEEEEecCceEEEEEec-CCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEe----eccceechhhh
Q 005056 277 MLFFIFNTEAIGVLVAHD-LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVA 351 (716)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~----~~~w~~~~~~a 351 (716)
...+ ..++....+++.. .....|.+.++ .......++.+.+.+.+++.+........... ....++....+
T Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (390)
T TIGR02360 198 ELIY-SNHERGFALCSMRSATRSRYYVQVP---LTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVC 273 (390)
T ss_pred ceEE-EeCCCceEEEeccCCCcceEEEEcC---CCCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhcc
Confidence 1122 2222222222221 11123444332 22223445544444555544432211111100 01112344566
Q ss_pred ccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
++|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|...... ..+.+|+.|+++|++++..+++.|....+..
T Consensus 274 ~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~-~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 274 EPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE-GSSAGIEGYSARALARVWKAERFSWWMTSLL 350 (390)
T ss_pred ccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7786 599999999999999999999999999999999999876432 3578999999999999999999887655544
Q ss_pred c
Q 005056 432 M 432 (716)
Q Consensus 432 ~ 432 (716)
.
T Consensus 351 ~ 351 (390)
T TIGR02360 351 H 351 (390)
T ss_pred c
Confidence 3
No 27
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=338.06 Aligned_cols=341 Identities=19% Similarity=0.263 Sum_probs=231.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC-----CCCeeeeChhHHHHHHhhhchHHHHHhcC-CCcccc
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLW 115 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~-----~p~a~~i~~rtmeilr~l~Gl~~~l~~~~-~~~~~~ 115 (716)
+++||+||||||+||++|+.|++.|++|+||||++.+.. .+++..++++++++|+++ |+.+++.... .+...+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYDM 82 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceEE
Confidence 358999999999999999999999999999999988654 456799999999999999 9999885433 232211
Q ss_pred ceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 116 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
.+.....+ .+ ... .+. ...|...+.+.|..|++.|.+++.+.|. ++++ ++
T Consensus 83 ---~~~~~~~~-~~---~~~---~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~------------------v~~~-~~ 132 (388)
T PRK07608 83 ---RVFGDAHA-RL---HFS---AYQ-AGVPQLAWIVESSLIERALWAALRFQPN------------------LTWF-PA 132 (388)
T ss_pred ---EEEECCCc-ee---Eee---ccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCC------------------cEEE-cc
Confidence 11111111 11 110 000 0123334567899999999999988762 2777 99
Q ss_pred EEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 196 ~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
++++++++++++++++. +|+ +++||+||+|||.+|.+|+.+++......+....+.+.+..+. . ..
T Consensus 133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 198 (388)
T PRK07608 133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER------P-HR 198 (388)
T ss_pred eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC------C-CC
Confidence 99999988888876654 342 6899999999999999999999876655544444444444321 1 11
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeEE-eeccceechhhhcc
Q 005056 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK 353 (716)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~~a~~ 353 (716)
...+.++.++...++++.+ ++++.+........ ..+...+++.+.+.++.........++.. ....|++....++.
T Consensus 199 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
T PRK07608 199 GTAYQWFRDDGILALLPLP--DGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR 276 (388)
T ss_pred CEEEEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence 2233344555444444443 34443322211110 11223355566666665543222223322 22346666666778
Q ss_pred ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL--KDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl--~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
|. .+||+|+|||||.|+|++|||+|+||+||.+|||+|.... .+.+..++|++|+++|+++...++..+....+.+
T Consensus 277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~ 354 (388)
T PRK07608 277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLF 354 (388)
T ss_pred hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4999999999999999999999999999999999998764 2444568999999999999998888776544433
No 28
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=339.68 Aligned_cols=340 Identities=17% Similarity=0.215 Sum_probs=224.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC-----CCCCeeeeChhHHHHHHhhhchHHHHHhcCC-Ccccc
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLW 115 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~-----~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~-~~~~~ 115 (716)
+++||+||||||+||++|+.|+++|++|+|+||.+.+. ..+++..++++++++|+++ |+.+++...+. +..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~-- 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLR-- 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccc--
Confidence 46999999999999999999999999999999998742 2345567899999999999 99998866542 221
Q ss_pred ceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHh-cCceeecccccccccccccccceEEeC
Q 005056 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 116 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
..... .+.....+...... . ......+.+++..|.+.|++.+.+ .|+ +|+++
T Consensus 79 -~~~~~---~~~~~~~~~~~~~~-~---~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~ 131 (392)
T PRK09126 79 -DAKVL---NGRSPFALTFDARG-R---GADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTG 131 (392)
T ss_pred -eEEEE---cCCCCceeEeehhh-c---CCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcC
Confidence 11111 11111111110000 0 001112357888999999988764 355 99999
Q ss_pred cEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCC
Q 005056 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (716)
Q Consensus 195 ~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~ 274 (716)
++|++++++++++++++. +|+ +++||+||+|||.+|.||+.+|++..........+...+... ...
T Consensus 132 ~~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~ 197 (392)
T PRK09126 132 TRVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE-------LPH 197 (392)
T ss_pred CeEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc-------CCC
Confidence 999999998888776653 453 689999999999999999999877653333222222222111 011
Q ss_pred CceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeE-Eeeccceechhhhc
Q 005056 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAE 352 (716)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~~a~ 352 (716)
....+.++.++...++++.+ ++.+.+.+.+.+.. ......+++.+.+.+.+.+......+.. .....|+.....++
T Consensus 198 ~~~~~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (392)
T PRK09126 198 HHTAWEWFGYGQTLALLPLN--GHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAH 275 (392)
T ss_pred CCEEEEEecCCCCeEEeECC--CCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHH
Confidence 22334444544444444443 33444443322211 1112344555544444444322222221 12234566666778
Q ss_pred cceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
+|. .+||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++ +...+++|+.|+++|++++..++..+....+
T Consensus 276 ~~~--~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 276 RFV--AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred HHh--hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 49999999999999999999999999999999999999874 3345789999999999999998887765444
No 29
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2e-36 Score=335.17 Aligned_cols=345 Identities=20% Similarity=0.277 Sum_probs=230.8
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCC-Cccccce
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWRK 117 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~-~~~~~~~ 117 (716)
|+.+++||+||||||+||++|+.|+++|++|+||||++.....+++..+++.++++|+++ |+++.+.+... +...
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~~--- 77 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVRT--- 77 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceeee---
Confidence 345679999999999999999999999999999999987655678899999999999999 99998876432 2221
Q ss_pred eEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcE
Q 005056 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHE 196 (716)
Q Consensus 118 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~ 196 (716)
+.+. ..+..+...+.... . ........+++..+.+.|.+.+.+. ++ +++++++
T Consensus 78 ~~~~--~~~~~~~~~~~~~~---~--~~~~~~~~v~~~~l~~~L~~~~~~~~~v-------------------~i~~~~~ 131 (407)
T PRK06185 78 LRFE--IGGRTVTLADFSRL---P--TPYPYIAMMPQWDFLDFLAEEASAYPNF-------------------TLRMGAE 131 (407)
T ss_pred EEEE--ECCeEEEecchhhc---C--CCCCcEEEeehHHHHHHHHHHHhhCCCc-------------------EEEeCCE
Confidence 1111 12222222211110 0 0011134578899999999988765 44 8999999
Q ss_pred EEEEEecCCeEE-EEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 197 CVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 197 v~~i~~~~~gv~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
+++++.+++.++ +++.. .+|+ .+++||+||+|||.+|.+|+.+|++.....+.+..+.+ ..+. . ...+
T Consensus 132 v~~~~~~~~~v~~v~~~~-~~g~---~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~--~~~~-~----~~~~ 200 (407)
T PRK06185 132 VTGLIEEGGRVTGVRART-PDGP---GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWF--RLPR-E----PDDP 200 (407)
T ss_pred EEEEEEeCCEEEEEEEEc-CCCc---EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEE--ecCC-C----CCCC
Confidence 999998887764 44432 2332 47999999999999999999999987765554443322 2211 1 1111
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCC---CCcee-EEeeccceechhh
Q 005056 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEV 350 (716)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~---~~~~~-i~~~~~w~~~~~~ 350 (716)
...+..|.++...++++.+ +.+.+........ ......+.+.+.+.+.+.++.. ...++ +.....|++....
T Consensus 201 ~~~~~~~~~~g~~~llP~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~ 277 (407)
T PRK06185 201 ESLMGRFGPGQGLIMIDRG---DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDR 277 (407)
T ss_pred cccceEecCCcEEEEEcCC---CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccc
Confidence 2334455665544444432 4454433222111 1122233444444444443221 11111 1122334556677
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
+++|. ++||+|+|||||.++|.+|||||+||+||.+|+|+|+..+++. .++.+|++|+++|++....++..+....+
T Consensus 278 ~~~~~--~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 355 (407)
T PRK06185 278 LRRWH--RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQR 355 (407)
T ss_pred ccccc--CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 78887 4999999999999999999999999999999999999887553 45689999999999999988776654443
No 30
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=7.2e-37 Score=336.07 Aligned_cols=340 Identities=21% Similarity=0.273 Sum_probs=231.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC-----CCeeeeChhHHHHHHhhhchHHHHHh-cCCCcccccee
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF 118 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~-----p~a~~i~~rtmeilr~l~Gl~~~l~~-~~~~~~~~~~~ 118 (716)
||+||||||+||++|+.|+++|++|+||||++.+... +++..++++++++|+++ |+.+++.+ .+.+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~--- 76 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRDI--- 76 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceEE---
Confidence 7999999999999999999999999999999986433 47899999999999999 99999987 55554322
Q ss_pred EEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEE
Q 005056 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (716)
Q Consensus 119 ~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~ 198 (716)
.+. ...+........ ... ..+...+.++|..|.+.|.+.+.+.|. ++|+++++|+
T Consensus 77 ~~~-~~~~~~~~~~~~---~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------~~v~~~~~v~ 131 (385)
T TIGR01988 77 HVS-DGGSFGALHFDA---DEI---GLEALGYVVENRVLQQALWERLQEYPN------------------VTLLCPARVV 131 (385)
T ss_pred EEE-eCCCCceEEech---hhc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------cEEecCCeEE
Confidence 111 111111111110 000 112223568899999999999988772 3899999999
Q ss_pred EEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceE
Q 005056 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (716)
Q Consensus 199 ~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 278 (716)
+++++++++++++. +|+ ++++|+||+|||.+|.+|++++++.....+....+...+.... . .....
T Consensus 132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~ 197 (385)
T TIGR01988 132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER------P-HQGTA 197 (385)
T ss_pred EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC------C-CCCEE
Confidence 99998888776543 453 5899999999999999999998776544333333333333211 0 11222
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCceeE-Eeeccceechhhhcccee
Q 005056 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC 356 (716)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~~a~~~~~ 356 (716)
+..+.++...++++.+ ++.+.+.+...+.. .....++++.+.+.+++.++.....+.. .....|++....+++|.
T Consensus 198 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (385)
T TIGR01988 198 WERFTPTGPLALLPLP--DNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV- 274 (385)
T ss_pred EEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence 2233344333344433 33433333222111 1122345555555666554432222221 22344566666777887
Q ss_pred cCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc-C--CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
.+||+|+|||||.|+|++|||+|+||+||.+|+|+|...++ + ...+.+|+.|+++|+++++.++..+....+.+
T Consensus 275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~ 351 (385)
T TIGR01988 275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLF 351 (385)
T ss_pred -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998764 2 23578999999999999999998876655443
No 31
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.1e-36 Score=336.25 Aligned_cols=340 Identities=17% Similarity=0.180 Sum_probs=214.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++ |+++++...+.+.. .+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~---~~~~~~g 78 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPK---ALYLMDG 78 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcc---eEEEecC
Confidence 6899999999999999999999999999999998888889999999999999999 99999987665432 1222111
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..+......+.. +............+.|..|.++|.+.+.+. ++ +++++++|+++++
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i-------------------~v~~~~~v~~~~~ 136 (400)
T PRK06475 79 RKARPLLAMQLG---DLARKRWHHPYIVCHRADLQSALLDACRNNPGI-------------------EIKLGAEMTSQRQ 136 (400)
T ss_pred CCcceEEEecch---hhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc-------------------EEEECCEEEEEec
Confidence 111111111110 000001112234688999999999998764 44 8999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccccc--CCCceEEE
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN--ERPGMLFF 280 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~--~~~~~~~~ 280 (716)
+++++++++...+++ .++++|+||||||.+|.||++++......... ..+...+....+...... ........
T Consensus 137 ~~~~v~v~~~~~~~~----~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (400)
T PRK06475 137 TGNSITATIIRTNSV----ETVSAAYLIACDGVWSMLRAKAGFSKARFSGH-IAWRTTLAADALPASFLSAMPEHKAVSA 211 (400)
T ss_pred CCCceEEEEEeCCCC----cEEecCEEEECCCccHhHHhhcCCCCCCcCCc-eEEEEEeehhhcchhhhhhcccCCceEE
Confidence 989988887633332 36899999999999999999986532111111 111111111111110000 11122233
Q ss_pred EEecCceEEEEEecCCCC-eEEEEEecCCCCCCCCCC----CHHHHHHHHHHHcCCCCC--c-eeE-Eeeccceechhhh
Q 005056 281 IFNTEAIGVLVAHDLKEG-EFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELS--D-IDV-IDIKPWVMHAEVA 351 (716)
Q Consensus 281 ~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~e~~~~~i~~~~g~~~~--~-~~i-~~~~~w~~~~~~a 351 (716)
++.++...++.+. .++ .+.+.. +..+......+ +.+.+.+++. ++... . ++. .....|++.....
T Consensus 212 ~~g~~~~~~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~ 285 (400)
T PRK06475 212 WLGNKAHFIAYPV--KGGKFFNFVA-ITGGENPGEVWSKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMAD 285 (400)
T ss_pred EEcCCCEEEEEEc--cCCcEEEEEE-EEcCCCCcccCCCCCCHHHHHHHhc---CCChHHHHHHhcCCceeECcCcccCC
Confidence 3455544333333 323 232221 11111111112 2233322221 11110 0 111 1122455544444
Q ss_pred ccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHH
Q 005056 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (716)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (716)
.+|.. .|||+|+|||||.|+|+.|||+|+||+||..|+++|.. .....+|+.|+++|+|+++.+++.+.
T Consensus 286 ~~~~~-~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~ 354 (400)
T PRK06475 286 AQFVG-PDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQ 354 (400)
T ss_pred Cccee-cCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 59999999999999999999999999999999999963 23468999999999999999988774
No 32
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=332.57 Aligned_cols=335 Identities=17% Similarity=0.199 Sum_probs=217.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+||||||+||++|+.|+++|++|+||||++.....+++..++++++++|+++ |+.+++.+.+.+...+ .+ .+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~---~~-~~ 75 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEHV---RS-VD 75 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccce---EE-Ec
Confidence 3899999999999999999999999999999988777777888999999999999 9999998877665332 12 22
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..|..+..++.. .+.. ..+.....+.|..|.+.|.+.+.. ++ +|+++++|++++++
T Consensus 76 ~~g~~~~~~~~~---~~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~ 131 (391)
T PRK07588 76 PTGRRKADLNVD---SFRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH 131 (391)
T ss_pred CCCCEEEEecHH---Hccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence 345444333211 1111 111223578899999999886643 44 89999999999999
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEE-E
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI-F 282 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~-~ 282 (716)
+++|++++. +|+ ++++|+||||||.+|.||+.+.........+.......+.... .. . .....+.. .
T Consensus 132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~-~~~~~~~~~~ 199 (391)
T PRK07588 132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDG---YR-P-RDERTYVLYN 199 (391)
T ss_pred CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCC---CC-C-CCCceEEEEe
Confidence 998877654 453 5789999999999999999763221111112222211111111 11 1 11122222 2
Q ss_pred ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCC---ce-eEE-eeccc---eechhhhccc
Q 005056 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS---DI-DVI-DIKPW---VMHAEVAEKF 354 (716)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~---~~-~i~-~~~~w---~~~~~~a~~~ 354 (716)
.++.....++. .++.+.+.+....+. ....++.+...+.+++.++.... .+ +.+ ....+ ......+++|
T Consensus 200 ~~g~~~~~~p~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 276 (391)
T PRK07588 200 EVGRQVARVAL--RGDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRW 276 (391)
T ss_pred CCCCEEEEEec--CCCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCcc
Confidence 33333333333 334433332222221 12234555556666665442111 01 111 11111 1233455677
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~ 426 (716)
. .|||+|+|||||.|+|+.|||+|+||+||.+|+|+|+... ...+.+|+.|+++|+|+...++..+..
T Consensus 277 ~--~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~ 344 (391)
T PRK07588 277 S--RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAK 344 (391)
T ss_pred c--cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6 5999999999999999999999999999999999998632 235789999999999999988877653
No 33
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.3e-36 Score=335.32 Aligned_cols=344 Identities=19% Similarity=0.270 Sum_probs=226.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC---CCCEEEECCCC-CC----CCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK-AF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPV 112 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~---Gi~v~liEr~~-~~----~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~ 112 (716)
|+.+||+||||||+||++|+.|+|+ |++|+||||.. .. ...+++..++++++++|+++ |+++++.+.+.+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~ 79 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPI 79 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCc
Confidence 3568999999999999999999999 99999999963 21 22457899999999999999 9999998877554
Q ss_pred cccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEE
Q 005056 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192 (716)
Q Consensus 113 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~ 192 (716)
.... +. . .+. ....... ..++ ..+.....+.|..|.+.|.+.+.+.+. ++++
T Consensus 80 ~~~~---~~-~-~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~g------------------~~~~ 131 (395)
T PRK05732 80 THIH---VS-D-RGH-AGFVRLD-AEDY---GVPALGYVVELHDVGQRLFALLDKAPG------------------VTLH 131 (395)
T ss_pred cEEE---Ee-c-CCC-CceEEee-hhhc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEE
Confidence 3211 11 0 111 1100000 0011 112222457788999999998876431 3899
Q ss_pred eCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccccc
Q 005056 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (716)
Q Consensus 193 ~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~ 272 (716)
+++++++++++++++++++. ++. ++++|+||+|||.+|.||+.+++...........+...+....
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~------- 197 (395)
T PRK05732 132 CPARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE------- 197 (395)
T ss_pred cCCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC-------
Confidence 99999999988888876654 342 6899999999999999999998876544432223222222111
Q ss_pred CCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHcCCCCCce-eEEeeccceechhh
Q 005056 273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEV 350 (716)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~~ 350 (716)
......+..+.+.....+++.+ ++.+.+...+.... .....++.+...+.+++.+++....+ ++.....|.+....
T Consensus 198 ~~~~~~~~~~~~~g~~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (395)
T PRK05732 198 AHQGRAFERFTEHGPLALLPMS--DGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVT 275 (395)
T ss_pred CCCCEEEEeecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccc
Confidence 0111222223333333344433 34443332221111 11223444555555555555432222 12223345555566
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCC---chhHHHHHHHHHhHHHHHHHHHHHHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQN 427 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a---~~~lL~sY~~eRrp~a~~~~~~s~~~ 427 (716)
+++|. .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.++++.. .+.+|++|+++|++++...+..+...
T Consensus 276 ~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~ 353 (395)
T PRK05732 276 AAQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGL 353 (395)
T ss_pred hhhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776 49999999999999999999999999999999999998875432 35799999999999999888877655
Q ss_pred HHHh
Q 005056 428 FRAA 431 (716)
Q Consensus 428 ~~~~ 431 (716)
.+.+
T Consensus 354 ~~~~ 357 (395)
T PRK05732 354 VRLF 357 (395)
T ss_pred HHHH
Confidence 4443
No 34
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-36 Score=326.86 Aligned_cols=326 Identities=19% Similarity=0.229 Sum_probs=211.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+||||||+||++|+.|+++|++|+||||++.+....++..++++++++|+.+ |+.+.+...+.+.... .+ .+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~~---~~-~~ 75 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILSTM---NL-LD 75 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCcccce---eE-Ec
Confidence 3799999999999999999999999999999999888888999999999999999 9999988776554322 11 12
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..|..+..... . .......++|..|.++|.+.+.. .+|+++++|++++++
T Consensus 76 ~~g~~~~~~~~------~---~~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~ 125 (373)
T PRK06753 76 DKGTLLNKVKL------K---SNTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE 125 (373)
T ss_pred CCCCEEeeccc------c---cCCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence 34444332211 0 01123578999999999887642 279999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEEe
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 283 (716)
++++++++. +|+ ++++|+||+|||.+|.||+.++..... .+.....+........ . .. ......++.
T Consensus 126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~~--~~~g~~~~~~~~~~~~-~--~~-~~~~~~~~~ 192 (373)
T PRK06753 126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSKV--RYQGYTCFRGLIDDID-L--KL-PDCAKEYWG 192 (373)
T ss_pred CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCCc--eEcceEEEEEEecccc-c--cC-ccceEEEEc
Confidence 888877654 453 679999999999999999998754321 1111111111111110 0 01 111222333
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCC--CCCCCCCCHHHHHHHHH-------HHcCCCCCceeEEeecccee-chhhhcc
Q 005056 284 TEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIF-------KLVGWELSDIDVIDIKPWVM-HAEVAEK 353 (716)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~i~-------~~~g~~~~~~~i~~~~~w~~-~~~~a~~ 353 (716)
++...++++. .++...+.+..... .....+.+.+.+.+.+. +++... ....+. .|.. .....++
T Consensus 193 ~~g~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~ 266 (373)
T PRK06753 193 TKGRFGIVPL--LNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQ-SETGIL---HHDIYDLKPLKS 266 (373)
T ss_pred CCCEEEEEEc--CCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhC-Ccccce---eecccccccccc
Confidence 3333233333 23332222222111 11222333333333322 111110 000111 1111 1123456
Q ss_pred ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
|. .|||+|+|||||.|+|+.|||+|+||+||.+|++.|.. ...+.+|+.|+++|++++..+++.+....+
T Consensus 267 ~~--~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 336 (373)
T PRK06753 267 FV--YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336 (373)
T ss_pred cc--CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Confidence 76 49999999999999999999999999999999999953 346789999999999999999998875544
No 35
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=328.91 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=216.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.||+||||||+||++|+.|+++|++|+||||++.+.+.+.+..++++++++|+++ |+.+++...+.+...+ .++ +
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~---~~~-~ 75 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTREL---AYF-N 75 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcce---EEE-c
Confidence 3899999999999999999999999999999998877788899999999999999 9999998877655332 221 2
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHh-cCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..|..+......... ....+.+.+.|..|.++|.+++.+ .|. .+|+++++|+++++
T Consensus 76 ~~g~~~~~~~~~~~~-----~~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~ 132 (413)
T PRK07538 76 RHGQRIWSEPRGLAA-----GYDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ 132 (413)
T ss_pred CCCCEEeeccCCccc-----CCCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence 344443321110000 111223468899999999998865 354 37999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEE
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 282 (716)
+++++.+++.+..+|+ .++++||+||||||.+|.||++++.... ...+...+...... ....+. .+..+.+.
T Consensus 133 ~~~~~~~~~~~~~~g~--~~~~~adlvIgADG~~S~vR~~l~~~~~-~~~~~g~~~~~~~~-~~~~~~----~~~~~~~~ 204 (413)
T PRK07538 133 DADVTVVFLGDRAGGD--LVSVRGDVLIGADGIHSAVRAQLYPDEG-PPRWNGVMMWRGVT-EAPPFL----TGRSMVMA 204 (413)
T ss_pred cCCceEEEEeccCCCc--cceEEeeEEEECCCCCHHHhhhhcCCCC-CCcccceEEEEEee-cCcccc----CCCcEEEE
Confidence 8888777765332332 3589999999999999999999864321 22222222111111 111111 11111222
Q ss_pred e-cCceEEEEEecCC-----CCeEEEEEecCCCC---CCCCCCCH-HHHHHHHHHHcCCCCC--ce-eEE----eeccce
Q 005056 283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPPQ---QNLEDFSP-EICEKLIFKLVGWELS--DI-DVI----DIKPWV 345 (716)
Q Consensus 283 ~-~~~~g~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~-e~~~~~i~~~~g~~~~--~~-~i~----~~~~w~ 345 (716)
. ++...++++.... ...+.|.+++..+. .....++. ....+++..+-++... ++ +++ ....|+
T Consensus 205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p 284 (413)
T PRK07538 205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP 284 (413)
T ss_pred cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence 2 1222222222111 01333433332221 11222221 2222333322222211 00 000 112233
Q ss_pred ech-hhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHH
Q 005056 346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (716)
Q Consensus 346 ~~~-~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s 424 (716)
+.. ...++|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|+.. + ..+.+|+.|+++|+|++..++..+
T Consensus 285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~-~~~~aL~~Ye~~R~~~~~~~~~~s 359 (413)
T PRK07538 285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--G-DPEAALAAYEAERRPATAQIVLAN 359 (413)
T ss_pred ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--C-CHHHHHHHHHHHhhHHHHHHHHHh
Confidence 322 3456776 499999999999999999999999999999999999863 2 367899999999999999888766
Q ss_pred HH
Q 005056 425 VQ 426 (716)
Q Consensus 425 ~~ 426 (716)
..
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 53
No 36
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.9e-35 Score=326.19 Aligned_cols=341 Identities=21% Similarity=0.241 Sum_probs=216.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
+..+|+||||||+||++|+.|+++|++|+||||++.+...++++.++++++++|+++ |+.+.+.+.+.+... +.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~~ 78 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTMM 78 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEEE
Confidence 458999999999999999999999999999999998888888999999999999999 999998876654432 2222
Q ss_pred ecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~ 201 (716)
....|..+...+... .+.. ..+.+...+.|..|.+.|.+.+.+.+. +++++++++++++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~i~ 137 (396)
T PRK08163 79 DAVDAEEVVRIPTGQ--AFRA-RFGNPYAVIHRADIHLSLLEAVLDHPL------------------VEFRTSTHVVGIE 137 (396)
T ss_pred eCCCCCEEEEeccch--hHHH-hcCCcEEEEEHHHHHHHHHHHHHhcCC------------------cEEEeCCEEEEEe
Confidence 223454444332211 0100 111223467899999999999887652 3899999999999
Q ss_pred ecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhc-CCC--ccccccccceEEEEEecCccccccccCCCceE
Q 005056 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GID--LVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (716)
Q Consensus 202 ~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~--~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 278 (716)
++++++++++. +|+ ++++|+||+|||.+|.+|+.+ +.+ +.|.. .+...+...++..... ....
T Consensus 138 ~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~----~~~~~~~~~~~~~~~~---~~~~ 203 (396)
T PRK08163 138 QDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGDAPRVTGHV----VYRAVIDVDDMPEDLR---INAP 203 (396)
T ss_pred cCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCCCCCccccE----EEEEEEeHHHCcchhc---cCcc
Confidence 88888776653 443 689999999999999999987 432 11211 1111121112211110 1111
Q ss_pred EEEEecCceEEEEEecCCCCe-EEEEEecCCCC-CC--CCCCCHHHHHHHHHHHcCCCCCceeEE-e---ecccee-chh
Q 005056 279 FFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QN--LEDFSPEICEKLIFKLVGWELSDIDVI-D---IKPWVM-HAE 349 (716)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~e~~~~~i~~~~g~~~~~~~i~-~---~~~w~~-~~~ 349 (716)
..+..++...++.+. .++. +.+.+.+..+. .. ....+.+.+.+. +-++.+...+++ . ...|.+ ...
T Consensus 204 ~~~~g~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T PRK08163 204 VLWAGPHCHLVHYPL--RGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSY---FEGIHPRPRQMLDKPTSWKRWATADRE 278 (396)
T ss_pred EEEEcCCceEEEEEe--cCCeEEEEEEEECCCCCcccccCCCCHHHHHHH---HcCCChHHHHHHhcCCceeEccccCCC
Confidence 222233332233333 2232 22222221111 11 011122222222 222111100011 0 011211 223
Q ss_pred hhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 350 ~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
..++|. .|||+|+|||||.|+|++|||+|+||+||++|++.|... +...+.+|+.|+++|+|++..++..+....+
T Consensus 279 ~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~ 354 (396)
T PRK08163 279 PVAKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGR 354 (396)
T ss_pred cccccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 446776 499999999999999999999999999999999999752 3335789999999999999999988765544
Q ss_pred H
Q 005056 430 A 430 (716)
Q Consensus 430 ~ 430 (716)
.
T Consensus 355 ~ 355 (396)
T PRK08163 355 I 355 (396)
T ss_pred h
Confidence 3
No 37
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=317.71 Aligned_cols=335 Identities=19% Similarity=0.209 Sum_probs=218.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
..||+||||||+||++|+.|+++|++|+||||++.+...+.+..++++++++|+++ |+.+.+.+.+.+..... + .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~~---~-~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGVD---L-F 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccceE---E-E
Confidence 46999999999999999999999999999999998888888999999999999999 99999988776553321 1 2
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
+..|+.+...+... +.....+ ....+.|..|.+.|.+.+.+.|+ +|+++++|+++++
T Consensus 79 ~~~g~~~~~~~~~~---~~~~~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 135 (375)
T PRK06847 79 DPDGTLLAELPTPR---LAGDDLP-GGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAIEQ 135 (375)
T ss_pred CCCCCEEEecCccc---ccccCCC-CcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEEEE
Confidence 33455443322110 0000001 23468899999999999988776 8999999999998
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhc-CCCccccccccceEEEEEecCccccccccCCCceEEEE
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 281 (716)
+++++++++. +|+ ++++|+||+|||.+|.+|+++ +.... ..+ .....+....+... .... .+.+
T Consensus 136 ~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~-~~~-~g~~~~~~~~~~~~-----~~~~-~~~~ 200 (375)
T PRK06847 136 DDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE-PEY-TGQGVWRAVLPRPA-----EVDR-SLMY 200 (375)
T ss_pred cCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC-cee-ccceEEEEEecCCC-----Cccc-eEEE
Confidence 8888766653 453 689999999999999999987 43221 111 11111111111100 0011 1222
Q ss_pred EecCceEEEEEecCCCC-eEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCC-c---e-eEE----eeccceech-hh
Q 005056 282 FNTEAIGVLVAHDLKEG-EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-D---I-DVI----DIKPWVMHA-EV 350 (716)
Q Consensus 282 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~-~---~-~i~----~~~~w~~~~-~~ 350 (716)
..++....+.+. ..+ .|.+.. ...+. ...++++...+.+++.+..... . + +.+ ....|.+.. ..
T Consensus 201 ~~~~~~~~~~p~--~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (375)
T PRK06847 201 LGPTTKAGVVPL--SEDLMYLFVT-EPRPD--NPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLV 275 (375)
T ss_pred eCCCcEEEEEcC--CCCeEEEEEe-ccCcc--cccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccC
Confidence 333332223332 222 232222 11111 1223444444444443321111 0 0 000 111122222 23
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (716)
..+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|.. ....+.+|+.|+++|+|+++.+++.|..+...
T Consensus 276 ~~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 276 PAPWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGRI 350 (375)
T ss_pred CCCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 45676 59999999999999999999999999999999999975 34457899999999999999999998766554
No 38
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=7.5e-35 Score=317.92 Aligned_cols=335 Identities=16% Similarity=0.167 Sum_probs=208.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+||||||+||++|+.|+++|++|+||||++.+...+.+..+.++++++|+++ ||.+.+.+.+.+... +.+ .+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~---~~~-~~ 76 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRG---ASF-VD 76 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccc---eEE-Ee
Confidence 3899999999999999999999999999999998887778889999999999999 999999876655432 112 22
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..|..+..........+ ........+.|..|.++|.+.+ ..++ +++|++++++++++
T Consensus 77 ~~g~~~~~~~~~~~~~~---~~~~~~~~i~R~~L~~~l~~~~-~~~v-------------------~i~~~~~v~~i~~~ 133 (372)
T PRK05868 77 RDGNELFRDTESTPTGG---PVNSPDIELLRDDLVELLYGAT-QPSV-------------------EYLFDDSISTLQDD 133 (372)
T ss_pred CCCCEEeecccccccCC---CCCCceEEEEHHHHHHHHHHhc-cCCc-------------------EEEeCCEEEEEEec
Confidence 34544432111000000 0011123456778888776543 2344 89999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccc-cccccceEEEEEecCccccccccCCCceEEEEE
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g-~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 282 (716)
+++|++++. +|+ ++++|+||||||.+|.||+++...... ...+. .....+..+.. . . ......+.+
T Consensus 134 ~~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g-~~~~~~~~~~~---~-~-~~~~~~~~~ 200 (372)
T PRK05868 134 GDSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG-THAAIFTVPNF---L-E-LDYWQTWHY 200 (372)
T ss_pred CCeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecc-eEEEEEEcCCC---C-C-CCcceEEEe
Confidence 888887765 453 578999999999999999998432211 11111 12222222211 1 1 112223333
Q ss_pred ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHc---CCCCCce-eEEeec---cce-echhhhccc
Q 005056 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDI-DVIDIK---PWV-MHAEVAEKF 354 (716)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~-~i~~~~---~w~-~~~~~a~~~ 354 (716)
.++....+++...+...+.+. .+............+...+.+++.+ ++....+ +.+... .|. +.....++|
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w 279 (372)
T PRK05868 201 GDSTMAGVYSARNNTEARAAL-AFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRW 279 (372)
T ss_pred cCCcEEEEEecCCCCceEEEE-EEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCC
Confidence 444433333332221112221 1111111111112223333444443 3432111 111111 111 233445678
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHH
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s 424 (716)
. +|||+|+|||||.++|+.|||+|+||+||+.||++|+.. ....+.+|+.|++..||+..+.++..
T Consensus 280 ~--~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 280 S--RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred C--CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 7 599999999999999999999999999999999999763 22368899999999888887766643
No 39
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=317.56 Aligned_cols=335 Identities=15% Similarity=0.138 Sum_probs=200.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~-~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
|+..+|+||||||+||++|+.|+++|++|+||||++.+ ...+.+..++++++++|+++ |+.+.. ..+.+... ..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~---~~ 78 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRE---RI 78 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccc---eE
Confidence 44589999999999999999999999999999999764 33456788999999999999 997654 33333221 11
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
+.+..|+.+... +.....+.+..|.+.|.+.+. .++|+++++|++
T Consensus 79 -~~~~~g~~~~~~-------------~~~~~~~~~~~l~~~L~~~~~---------------------~~~i~~~~~v~~ 123 (386)
T PRK07236 79 -YLDRDGRVVQRR-------------PMPQTQTSWNVLYRALRAAFP---------------------AERYHLGETLVG 123 (386)
T ss_pred -EEeCCCCEeecc-------------CCCccccCHHHHHHHHHHhCC---------------------CcEEEcCCEEEE
Confidence 112334333211 111122456677777765431 137999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecC--ccccccccCCCce
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK--DLGDYLLNERPGM 277 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~--~l~~~~~~~~~~~ 277 (716)
+++++++|++++. +|+ +++||+||+|||++|.||+++ .+..... +...+.+..... .+...........
T Consensus 124 i~~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l-~~~~~~~-~~g~~~~~~~v~~~~~~~~~~~~~~~~ 194 (386)
T PRK07236 124 FEQDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQL-LPDVRPT-YAGYVAWRGLVDEAALPPEARAALRDR 194 (386)
T ss_pred EEecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHh-CCCCCCC-cCCeEEEEEecchHHcCchhhhhcccc
Confidence 9999888877664 453 689999999999999999998 3222222 222221111111 1111000000111
Q ss_pred EEEEEecCceEEEEEecCCC-------C--eEEEEEecCCCCC---CC--------------CCCCHHHHHHHHHHHc-C
Q 005056 278 LFFIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQ---NL--------------EDFSPEICEKLIFKLV-G 330 (716)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~-------~--~~~~~~~~~~~~~---~~--------------~~~~~e~~~~~i~~~~-g 330 (716)
..+...++...+.+..+... . .|++..+...... .+ ....++.. +.+++.. +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 273 (386)
T PRK07236 195 FTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVL-AELRDDAAE 273 (386)
T ss_pred eEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHH-HHHHHHHHH
Confidence 22222333332222222110 1 2333333221100 00 00112222 2222221 1
Q ss_pred -CCCCceeEE----eeccceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhH
Q 005056 331 -WELSDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASI 405 (716)
Q Consensus 331 -~~~~~~~i~----~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~l 405 (716)
+.+.-.+++ ....|.+.....++|. .|||+|+|||||.|+|+.|||+|+||+||..|+++|.... ...+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~a 349 (386)
T PRK07236 274 LLAPVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAA 349 (386)
T ss_pred hcCHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHH
Confidence 111000000 0112233333456676 5999999999999999999999999999999999998642 225789
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 005056 406 LNTYETERKPIAEFNTALSVQNFR 429 (716)
Q Consensus 406 L~sY~~eRrp~a~~~~~~s~~~~~ 429 (716)
|+.|+++|+|+++..++.|.....
T Consensus 350 l~~Ye~~R~~r~~~~~~~s~~~~~ 373 (386)
T PRK07236 350 LAAWEAERLAVGAAIVARGRRLGA 373 (386)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999998875543
No 40
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=3.9e-34 Score=317.48 Aligned_cols=344 Identities=19% Similarity=0.286 Sum_probs=206.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCcc-ccce--eEE
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD-LWRK--FIY 120 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~-~~~~--~~~ 120 (716)
+|+||||||+||++|+.|+++| ++|+||||++.....+.+..+.++++++|+++ |+.+.+.+.+.... .+.. +.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEEE
Confidence 6999999999999999999998 69999999998888888999999999999999 99988876553211 1111 111
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.....+..+... + ........+.|..|...|.+.+.. ..++++++|+++
T Consensus 81 ~~~~~~~~~~~~-------~---~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~i 129 (414)
T TIGR03219 81 RNGSDASYLGAT-------I---APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQI 129 (414)
T ss_pred EecCccceeeee-------c---cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEEE
Confidence 111111111100 0 001112357788888888876532 268899999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCC--cc-ccccccceEEE--EEecCccccc-----c
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID--LV-GEKDLQKLVSV--HFLSKDLGDY-----L 270 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~--~~-g~~~~~~~~~i--~~~~~~l~~~-----~ 270 (716)
+++++++++++. +|+ ++++|+||+|||.+|.||+.+... .. ....+.....+ .+...++... .
T Consensus 130 ~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~ 202 (414)
T TIGR03219 130 EEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGL 202 (414)
T ss_pred EecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccc
Confidence 998888877654 453 689999999999999999987311 00 01111111111 1111111110 0
Q ss_pred ccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecC-CCCC------CCCCCC-HHHHHHHHHHHcCCCCCceeE----
Q 005056 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFY-PPQQ------NLEDFS-PEICEKLIFKLVGWELSDIDV---- 338 (716)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~-~e~~~~~i~~~~g~~~~~~~i---- 338 (716)
.........++..++...++++. .+++....+.+. .+.. ....++ +....++++.+-++.+.-.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~ 280 (414)
T TIGR03219 203 DEHLVDVPQMYLGLDGHILTFPV--RQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECI 280 (414)
T ss_pred cccccccceEEEcCCCeEEEEEC--CCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhC
Confidence 00000111122333332223332 223321111111 1100 001111 111222222222221100000
Q ss_pred Eeeccceech-hhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHH-cCCCchhHHHHHHHHHhHH
Q 005056 339 IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKPI 416 (716)
Q Consensus 339 ~~~~~w~~~~-~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a~~~lL~sY~~eRrp~ 416 (716)
.....|.+.. ...++|. +|||+|+|||||.|+|+.|||+|+||+||.+|+++|.... ++...+.+|+.|+++|+|+
T Consensus 281 ~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r 358 (414)
T TIGR03219 281 PAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR 358 (414)
T ss_pred CCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH
Confidence 0112233221 2356776 4999999999999999999999999999999999998754 2344578999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005056 417 AEFNTALSVQNFRAA 431 (716)
Q Consensus 417 a~~~~~~s~~~~~~~ 431 (716)
+..+++.|..+.+.+
T Consensus 359 ~~~~~~~s~~~~~~~ 373 (414)
T TIGR03219 359 ACRVQRTSREAGELY 373 (414)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998765543
No 41
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=4.3e-32 Score=308.34 Aligned_cols=353 Identities=18% Similarity=0.230 Sum_probs=207.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC-CCC---CCeeeeChhHHHHHHhhhc--hHHHHHhcCCCccc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STH---PQAHFINNRYALVFRKLDG--LAEEIERSQPPVDL 114 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~-~~~---p~a~~i~~rtmeilr~l~G--l~~~l~~~~~~~~~ 114 (716)
.+..+|+||||||+||++|+.|+|+|++|+||||++.. ... .+++.|+++++++|+++ | +.+++.+.+.....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD 157 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence 45689999999999999999999999999999998743 221 24688999999999999 7 46777776643211
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeC
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
....+.....|......+...... ....| ....+.|..|+++|.+.+. . ..++++
T Consensus 158 -~i~~~~d~~~G~~~~~~~~~~~~~--~~g~p-~~~~I~R~~L~~~L~~alg---~------------------~~i~~g 212 (668)
T PLN02927 158 -RINGLVDGISGSWYVKFDTFTPAA--SRGLP-VTRVISRMTLQQILARAVG---E------------------DVIRNE 212 (668)
T ss_pred -eeeeeeecCCCceEeecccccccc--ccCCC-eEEEEeHHHHHHHHHhhCC---C------------------CEEEcC
Confidence 001111222344333322211100 00011 1346889999999977542 2 257899
Q ss_pred cEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhc-CCCccccccccceEEEEEecCccccccccC
Q 005056 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (716)
Q Consensus 195 ~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~i~~~~~~l~~~~~~~ 273 (716)
++|+++++++++|++++. +|+ ++++|+||+|||++|.+|+.+ +.. .. .+.....+....+...... .
T Consensus 213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~--~~-~~sG~~~~rgi~~~~p~~~--~ 280 (668)
T PLN02927 213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRS--EA-TYSGYTCYTGIADFIPADI--E 280 (668)
T ss_pred CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCC--CC-cccceEEEEEEcCCCcccc--c
Confidence 999999999999887654 453 679999999999999999987 322 11 1222222211111101000 0
Q ss_pred CCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEE------eeccceec
Q 005056 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI------DIKPWVMH 347 (716)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~------~~~~w~~~ 347 (716)
.... ..+..+. ..++..+...+.+.+......+... .+-.+....++.+.+-++.+.-.+++ .+..|.+.
T Consensus 281 ~~~~-~~~~G~~--~~~v~~~v~~g~~~~~~f~~~p~~~-~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iy 356 (668)
T PLN02927 281 SVGY-RVFLGHK--QYFVSSDVGGGKMQWYAFHEEPAGG-ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIY 356 (668)
T ss_pred ccce-EEEEcCC--eEEEEEcCCCCeEEEEEEEECCccc-cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEE
Confidence 1111 1112222 2222223333333332211111110 01111111222222222221100110 01123222
Q ss_pred hh-hhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcC-------CCchhHHHHHHHHHhHHHHH
Q 005056 348 AE-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAEF 419 (716)
Q Consensus 348 ~~-~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g-------~a~~~lL~sY~~eRrp~a~~ 419 (716)
.. ...+|. .|||+|+|||||.|+|+.|||+|+||+||+.|+++|....++ ...+.+|+.|+++|+|++..
T Consensus 357 d~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~ 434 (668)
T PLN02927 357 DRSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAI 434 (668)
T ss_pred eccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 21 223565 599999999999999999999999999999999999887533 23468999999999999999
Q ss_pred HHHHHHHHHHHhcccccc
Q 005056 420 NTALSVQNFRAAMEVPSA 437 (716)
Q Consensus 420 ~~~~s~~~~~~~~~~~~~ 437 (716)
++..+.....+.......
T Consensus 435 i~~~ar~a~~~~~~~~~y 452 (668)
T PLN02927 435 IHAMARMAAIMASTYKAY 452 (668)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888876555544433333
No 42
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=2.7e-32 Score=307.63 Aligned_cols=344 Identities=18% Similarity=0.186 Sum_probs=208.9
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
....+||+||||||+|+++|+.|+++|++|+|+||.........+..++++++++|+++ |+.+++....... +..+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~--~~~~~ 116 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQK--ATGMA 116 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCcc--cccEE
Confidence 45568999999999999999999999999999999876555667899999999999999 9999887653221 11222
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
... .|+... .+...... . .........+.+..|.+.|++++.+.+. ++++++ ++++
T Consensus 117 v~~--~g~~~~-~~~~~~~~-~-~~~~~~g~~i~r~~l~~~L~~~a~~~~~------------------V~i~~g-tvv~ 172 (514)
T PLN02985 117 VYK--DGKEAV-APFPVDNN-N-FPYEPSARSFHNGRFVQRLRQKASSLPN------------------VRLEEG-TVKS 172 (514)
T ss_pred EEE--CCEEEE-EeCCCCCc-C-CCcccceeeeecHHHHHHHHHHHHhCCC------------------eEEEee-eEEE
Confidence 211 343321 11110000 0 0001123467889999999999987642 377766 4666
Q ss_pred EEecCCeE-EEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceE
Q 005056 200 VSATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (716)
Q Consensus 200 i~~~~~gv-~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 278 (716)
+..+++.+ .+++.+ .+|+ +.+++||+||+|||.+|.+|++++...... .... +.+...+.. . ..+...
T Consensus 173 li~~~~~v~gV~~~~-~dG~--~~~~~AdLVVgADG~~S~vR~~l~~~~~~~--~s~~--~~~~~~~~~--~--~~~~~~ 241 (514)
T PLN02985 173 LIEEKGVIKGVTYKN-SAGE--ETTALAPLTVVCDGCYSNLRRSLNDNNAEV--LSYQ--VGYISKNCR--L--EEPEKL 241 (514)
T ss_pred EEEcCCEEEEEEEEc-CCCC--EEEEECCEEEECCCCchHHHHHhccCCCcc--eeEe--EEEEEcccc--C--CCCCcc
Confidence 65554432 355542 2343 357889999999999999999998654321 1111 111111110 0 112223
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHH------------HHHHHHc--CCCCCceeEEeeccc
Q 005056 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE------------KLIFKLV--GWELSDIDVIDIKPW 344 (716)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------------~~i~~~~--g~~~~~~~i~~~~~w 344 (716)
+.++.+....++.+.. ++++.+.+....+. ....+..... +.+++.+ +.+.. .++.....+
T Consensus 242 ~~~~~~~~~~l~ypi~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~ 316 (514)
T PLN02985 242 HLIMSKPSFTMLYQIS--STDVRCVFEVLPDN--IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTK 316 (514)
T ss_pred eEEcCCCceEEEEEeC--CCeEEEEEEEeCCC--CCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcc
Confidence 4444444334444433 23333222211111 1111111111 1222221 11111 112221111
Q ss_pred eechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHhHHHHHHH
Q 005056 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPIAEFNT 421 (716)
Q Consensus 345 ~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl---~g~a~~~lL~sY~~eRrp~a~~~~ 421 (716)
......+. .+|++|+|||||.++|+.|||||+|++||..|+..|...- +..+..++|++|+.+|+|++..++
T Consensus 317 ---~l~~~~~~--~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~ 391 (514)
T PLN02985 317 ---RMSATLSD--KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVN 391 (514)
T ss_pred ---cccccccC--CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHH
Confidence 11223333 4899999999999999999999999999999999997642 222346899999999999999999
Q ss_pred HHHHHHHHHh
Q 005056 422 ALSVQNFRAA 431 (716)
Q Consensus 422 ~~s~~~~~~~ 431 (716)
..|...++.+
T Consensus 392 ~la~al~~~f 401 (514)
T PLN02985 392 TLGNAFSQVL 401 (514)
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 43
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=283.85 Aligned_cols=337 Identities=22% Similarity=0.243 Sum_probs=197.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
+-+|+|||||++||++|++|+|.|++|+|+|++..++..+++..+.-+++.+|+.+ |+.+.+++.+.|...+ +..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~---v~~~ 77 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGR---VLIH 77 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCcccce---eeee
Confidence 35899999999999999999999999999999988888888888888899999999 9999999999987543 2445
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEE-----
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC----- 197 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v----- 197 (716)
..+|++..++......++ ...+.|..+...|+..+...+ .|+|+..+
T Consensus 78 ~~sg~~~~~~~~~~~~~~--------i~r~~~r~ll~~lL~~a~~~~--------------------~ikf~~~~~~~~~ 129 (420)
T KOG2614|consen 78 GDSGKEVSRILYGEPDEY--------ILRINRRNLLQELLAEALPTG--------------------TIKFHSNLSCTSK 129 (420)
T ss_pred cCCCCeeEecccCCchHH--------HHHHHHHHHHHHHHHhhcCCC--------------------eeecccccccccc
Confidence 667777766544333222 245556555554444443332 66776533
Q ss_pred -EEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccc--cccCC
Q 005056 198 -VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY--LLNER 274 (716)
Q Consensus 198 -~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~--~~~~~ 274 (716)
+.++.......+.+. +| .++++|++|||||++|.||+.|+.........+.+..+.|........ .....
T Consensus 130 ~~~~~~~~~~~~v~l~---~g----~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~ 202 (420)
T KOG2614|consen 130 DVEIETLGKKLVVHLS---DG----TTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIY 202 (420)
T ss_pred cceeeecccccceecC---CC----cEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceeccc
Confidence 333322222223332 34 379999999999999999999987655555555555555443221110 00011
Q ss_pred CceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCC-------HHHHHHHHHHHcCCCCCc-eeEEeecccee
Q 005056 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-------PEICEKLIFKLVGWELSD-IDVIDIKPWVM 346 (716)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~i~~~~g~~~~~-~~i~~~~~w~~ 346 (716)
...++....+....+++..-.+.-++.+..++..++ .+.... ++.+.+++. +++.+... ..+....||.+
T Consensus 203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~-~l~~~~~~v~~~~~en~~d~i~-~~~~e~i~~t~l~~r~p~~~ 280 (420)
T KOG2614|consen 203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPE-KLKKTSLEVVDFFPENFPDIIE-LTGEESIVRTPLADRPPWPL 280 (420)
T ss_pred CCeEEEcccCCceEEEEEeecCCcccccccCcCCHH-HHhhhHHHHHHHhHHhHHHHHH-hcChHHhhhchhhhcCCcCe
Confidence 122222222221111111111111222221211111 111111 112222221 12221111 11223344533
Q ss_pred chhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 005056 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426 (716)
Q Consensus 347 ~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~ 426 (716)
- .-+.+ .++|+|+|||||.|.|+.|||+|+|++|+..||.+|+...+. .+..+.+|++ .+-...+.+.++.
T Consensus 281 i---~~~~s--~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s~--~~e~~~~ie~a~~ 351 (420)
T KOG2614|consen 281 I---SVKCS--PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYSR--ENESHAIIELAMY 351 (420)
T ss_pred e---eeccC--CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhccccceec--ccchhHHHHHHHH
Confidence 2 22222 479999999999999999999999999999999999998653 2344455553 2223333444444
Q ss_pred HHH
Q 005056 427 NFR 429 (716)
Q Consensus 427 ~~~ 429 (716)
+|.
T Consensus 352 ~Y~ 354 (420)
T KOG2614|consen 352 SYK 354 (420)
T ss_pred HHH
Confidence 443
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=6.7e-31 Score=297.57 Aligned_cols=342 Identities=16% Similarity=0.116 Sum_probs=202.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC-CCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~-~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
..+||+||||||+|+++|+.|+++|++|+||||++. ......+..++++++++|+++ |+++.+...+.+... +..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~---~~v 107 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFG---YVV 107 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceee---eEE
Confidence 458999999999999999999999999999999872 222445678999999999999 999999877665432 111
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.+..|+.+ .+... .......+.+..+.+.|++.+...-. ++++++. .+++++
T Consensus 108 -~~~~G~~~-~i~~~---------~~~~g~~~~rg~~~~~Lr~~a~~~~~----------------~~V~v~~-~~v~~l 159 (567)
T PTZ00367 108 -FDHKGKQV-KLPYG---------AGASGVSFHFGDFVQNLRSHVFHNCQ----------------DNVTMLE-GTVNSL 159 (567)
T ss_pred -EECCCCEE-EecCC---------CCCceeEeEHHHHHHHHHHHHHhhcC----------------CCcEEEE-eEEEEe
Confidence 11223332 11110 01112345567788888887621100 1236654 467777
Q ss_pred EecCCe-----EEEEEEeccCCc------------------eeeEEEEecEEEecCCCChhhhhhcCCCccccccccceE
Q 005056 201 SATDQC-----INVIASFLKEGK------------------CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV 257 (716)
Q Consensus 201 ~~~~~g-----v~v~v~~~~~g~------------------~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~ 257 (716)
..+++. ..+++...+.++ ....+++||+||+|||.+|.+|++++.......+.+.+.
T Consensus 160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~ 239 (567)
T PTZ00367 160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV 239 (567)
T ss_pred ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence 544332 223333211100 012478999999999999999999976543333333332
Q ss_pred EEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCC-CCC---C--------CHHHHHHHH
Q 005056 258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LED---F--------SPEICEKLI 325 (716)
Q Consensus 258 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--------~~e~~~~~i 325 (716)
........+ + .+.....++.++...++++.. +++..+.+.+..+... ..+ + .++.+.+.+
T Consensus 240 g~~~~~~~l-----p-~~~~~~v~~g~~gpi~~yPl~--~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f 311 (567)
T PTZ00367 240 GLVLKNVRL-----P-KEQHGTVFLGKTGPILSYRLD--DNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESF 311 (567)
T ss_pred EEEEecccC-----C-CCCeeEEEEcCCceEEEEEcC--CCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHH
Confidence 222211111 1 122233345555554555543 3333322222221100 000 0 011112212
Q ss_pred HHHcCCCCCceeEEeeccceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc----CC-
Q 005056 326 FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK----DI- 400 (716)
Q Consensus 326 ~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~----g~- 400 (716)
.+.+... ..+ ..|+.....+..+. .+||+|+|||||.++|+.|||||+||+||..|+++|..+.+ ..
T Consensus 312 ~~~l~~~-~~l-----~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~ 383 (567)
T PTZ00367 312 IRASKDT-KRI-----RSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN 383 (567)
T ss_pred HHhhccc-CCe-----EEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCch
Confidence 1111110 111 22333333344444 58999999999999999999999999999999999986532 11
Q ss_pred ---CchhHHH----HHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 401 ---APASILN----TYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 401 ---a~~~lL~----sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
..+.+|+ +|+.+|++++..++..|...++.+
T Consensus 384 d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf 421 (567)
T PTZ00367 384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVF 421 (567)
T ss_pred hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1256677 999999999999999888777654
No 45
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=9.5e-28 Score=253.42 Aligned_cols=291 Identities=18% Similarity=0.221 Sum_probs=183.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
+||+||||||+||++|+.|+++|++|+||||++.+....++..+.+++++.+... +.. .+.. +....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~-------~~~~~~-~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LEL-IVNL-------VRGARF-FS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chh-hhhh-------eeeEEE-Ec
Confidence 5999999999999999999999999999999988777778889999999998775 531 1111 111111 12
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+..+. .. ........++|..|++.|.+.+.+.|+ +++++++++++.++
T Consensus 71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~ 120 (295)
T TIGR02032 71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH 120 (295)
T ss_pred CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence 2232211 00 111224568899999999999998887 99999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEEe
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 283 (716)
++++++++. ++ ..++++|+||+|||.+|.+|+++++....... ...+...+..+. ..+ ......+++-+.
T Consensus 121 ~~~~~~~~~---~~---~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 190 (295)
T TIGR02032 121 DDRVVVIVR---GG---EGTVTAKIVIGADGSRSIVAKKLGLRKEPREL-GVAARAEVEMPD-EEV--DEDFVEVYIDRG 190 (295)
T ss_pred CCEEEEEEc---Cc---cEEEEeCEEEECCCcchHHHHhcCCCCCCcce-eeEEEEEEecCC-ccc--CcceEEEEcCCC
Confidence 888776654 22 23789999999999999999999866432111 112222333221 000 111111111111
Q ss_pred --cCceEEEEEecCCCCeEEEEEecCCCCCCCCCCC-HHHHHHHHHHHcCCCCCceeEEeeccceechh-hhccceecCC
Q 005056 284 --TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHAE-VAEKFLCCYN 359 (716)
Q Consensus 284 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~-~a~~~~~~~g 359 (716)
+....++++. .++.+.+.+...... ...+ ++.+.++++.... ....++.....|..... ...++. ++
T Consensus 191 ~~~~~~~~~~P~--~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~--~~ 261 (295)
T TIGR02032 191 ISPGGYGWVFPK--GDGTANVGVGSRSAE---EGEDLKKYLKDFLARRPE--LKDAETVEVIGAPIPIGRPDDKTV--RG 261 (295)
T ss_pred cCCCceEEEEeC--CCCeEEEeeeeccCC---CCCCHHHHHHHHHHhCcc--cccCcEEeeeceeeccCCCCCccc--cC
Confidence 2233344443 345555544332221 1112 3344444443321 12333444334433322 344554 59
Q ss_pred eEEEEccCCccCCCCCCccchhhHhHHHHHHHHH
Q 005056 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (716)
Q Consensus 360 RV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkL 393 (716)
||+|+|||||.++|+.|||||+||+||..+|+.|
T Consensus 262 ~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 262 NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998754
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.96 E-value=9e-27 Score=258.88 Aligned_cols=326 Identities=13% Similarity=0.140 Sum_probs=192.2
Q ss_pred CCccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCcc
Q 005056 34 SKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (716)
Q Consensus 34 ~~~~~~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~ 113 (716)
..+.++..+++||+||||||+|+++|+.|+++|++|+|+||+.. ...+++..|+. +.++++ |+.+.+......
T Consensus 30 ~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~i~-- 102 (450)
T PLN00093 30 AASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRKVT-- 102 (450)
T ss_pred CCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHHhh--
Confidence 33445667779999999999999999999999999999999864 45678888864 556677 777665442111
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCc-cccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEE
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~ 192 (716)
...+. +..+..+. +.. ...+. ....++|..|++.|.+++.+.|+ +++
T Consensus 103 ---~~~~~-~p~~~~v~-~~~--------~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------~~~ 150 (450)
T PLN00093 103 ---KMKMI-SPSNVAVD-IGK--------TLKPHEYIGMVRREVLDSFLRERAQSNGA-------------------TLI 150 (450)
T ss_pred ---hheEe-cCCceEEE-ecc--------cCCCCCeEEEecHHHHHHHHHHHHHHCCC-------------------EEE
Confidence 11111 11121111 000 01111 12358999999999999999887 777
Q ss_pred eCcEEEEEEec---CCeEEEEEEecc----CCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCc
Q 005056 193 MGHECVSVSAT---DQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD 265 (716)
Q Consensus 193 ~g~~v~~i~~~---~~gv~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~ 265 (716)
.+ ++++++.. ++.+.+++.... +|+ ..+++||+||||||++|.||+.+++... .....+...+..++
T Consensus 151 ~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~--~~~v~a~~VIgADG~~S~vrr~lg~~~~---~~~~~~~~~~~~~~ 224 (450)
T PLN00093 151 NG-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT--PKTLEVDAVIGADGANSRVAKDIDAGDY---DYAIAFQERIKIPD 224 (450)
T ss_pred ec-eEEEEEeccCCCCcEEEEEEeccccccCCC--ccEEEeCEEEEcCCcchHHHHHhCCCCc---ceeEEEEEEEeCCh
Confidence 66 47777642 345666654221 132 3479999999999999999999987521 11111111111111
Q ss_pred cccccccCCCceEEEEE----ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEee
Q 005056 266 LGDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341 (716)
Q Consensus 266 l~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~ 341 (716)
.. . ...+....+++ .|+..+|+++.. +...+.+..... ..+.....+.++..+.......++...
T Consensus 225 ~~--~-~~~~~~~~~~~g~~~~p~~Y~WifP~g---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~~~~ 293 (450)
T PLN00093 225 DK--M-EYYEDLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVVN-----KPAIKKYQRATRNRAKDKIAGGKIIRV 293 (450)
T ss_pred hh--c-cccCCeEEEEeCCCCCCCceEEEEECC---CcEEEEEEEccC-----CCChHHHHHHHHHHhhhhcCCCeEEEE
Confidence 00 0 00111222222 244455555543 222232211111 112222333333322211111222222
Q ss_pred ccceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC---CchhHHHHHHHHHhHHH
Q 005056 342 KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIA 417 (716)
Q Consensus 342 ~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp~a 417 (716)
..+.+......++. .+|++|+|||||.++|+.|+|++.||.++..+|+.++..++.. .....|..|++..+..-
T Consensus 294 ~~~~ip~~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~ 370 (450)
T PLN00093 294 EAHPIPEHPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKY 370 (450)
T ss_pred EEEEccccccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH
Confidence 22222223344555 4899999999999999999999999999999999999877532 24577899998766543
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.96 E-value=5.7e-27 Score=257.77 Aligned_cols=318 Identities=16% Similarity=0.186 Sum_probs=195.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
+||+||||||+|+++|+.|++.|++|+|+||+. ....+++..++++ +++++ |+.+++..... ...... +
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~~-----~~~~~~-~ 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRRV-----TQMRMI-S 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhhc-----ceeEEE-c
Confidence 699999999999999999999999999999983 3445688888874 45666 77766654321 111111 1
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+..+. .... ........++|..|++.|.+++.+.|+ +++.+ +++++.++
T Consensus 70 ~~~~~~~-~~~~--------~~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~~ 120 (388)
T TIGR02023 70 PSRVPIK-VTIP--------SEDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLERD 120 (388)
T ss_pred CCCceee-eccC--------CCCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEEc
Confidence 2222211 0000 000012258999999999999998887 77665 69999988
Q ss_pred CCeEEEEEEec---cCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEE
Q 005056 204 DQCINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 204 ~~gv~v~v~~~---~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
++++++++... .++ +..+++||+||+|||.+|.||+.++++.... ....+...|..++. .. ...+....+
T Consensus 121 ~~~~~v~~~~~~~~~~~--~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~-~~--~~~~~~~~~ 193 (388)
T TIGR02023 121 RDGVTLTYRTPKKGAGG--EKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD-KM--AYYEELADV 193 (388)
T ss_pred CCeEEEEEEeccccCCC--cceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch-hc--ccCCCeEEE
Confidence 88887776531 122 2357999999999999999999998764211 11112222321110 00 011122222
Q ss_pred EE----ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhcccee
Q 005056 281 IF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLC 356 (716)
Q Consensus 281 ~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~ 356 (716)
++ .|+..+++++. . +...+.+... ....+.+...+.+++.++.... ++.......+.....++|.
T Consensus 194 ~~~~~~~p~~y~wv~P~--~-~~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ip~~~~~~~~- 262 (388)
T TIGR02023 194 YYGGEVSPDFYGWVFPK--G-DHIAVGTGTG-----THGFDAKQLQANLRRRAGLDGG--QTIRREAAPIPMKPRPRWD- 262 (388)
T ss_pred EECCCcCCCceEEEeeC--C-CeeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCCc--eEeeeeeEecccccccccc-
Confidence 22 23334444433 2 2232322111 1112344455555555442211 2222111122223445565
Q ss_pred cCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHH
Q 005056 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT 421 (716)
Q Consensus 357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~ 421 (716)
.+||+|+|||||.++|++|+|+++||.++..+|+.|++.+++. ....|..|+++.+..-....
T Consensus 263 -~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~~~~ 325 (388)
T TIGR02023 263 -FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYGTTF 325 (388)
T ss_pred -CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999988653 46789999998887654433
No 48
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=5.1e-28 Score=285.78 Aligned_cols=325 Identities=20% Similarity=0.251 Sum_probs=199.2
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhc--hHHHHHhcCCCccccceeEE
Q 005056 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~G--l~~~l~~~~~~~~~~~~~~~ 120 (716)
+|+||||||+||++|+.|+++ |++|+|+||++.....+.+..+++++++.|+.+ + +.+.+...... |....+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~~~---~~~~~~ 77 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAFNH---WDDIDV 77 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhccc---CCceEE
Confidence 799999999999999999998 899999999998777788999999999999877 5 44444333221 111111
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.. .|..+.. .......+.|..|..+|.+++.+.|+ +|+++++++++
T Consensus 78 ~~--~g~~~~~-------------~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~i 123 (765)
T PRK08255 78 HF--KGRRIRS-------------GGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPDD 123 (765)
T ss_pred EE--CCEEEEE-------------CCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCch
Confidence 11 1221110 11123467899999999999999887 89999988765
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEE
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
++. .+++|+||+|||.+|.||+++...+.............+.... .. ....+
T Consensus 124 ~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~---~~-----~~~~~ 176 (765)
T PRK08255 124 QAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHK---VF-----DAFTF 176 (765)
T ss_pred hhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCC---cc-----cceeE
Confidence 320 1369999999999999999874322211111000000111000 00 00001
Q ss_pred EEecCceEE----EEEecCCCCeEEEEEecCCC---CCCCCCCCHHHHHHHHHHHcCCCCCceeEE------eecccee-
Q 005056 281 IFNTEAIGV----LVAHDLKEGEFILQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVI------DIKPWVM- 346 (716)
Q Consensus 281 ~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~------~~~~w~~- 346 (716)
.+.+...++ .+........|++.+ .+. ......++++...+.+++.+........++ ....|..
T Consensus 177 ~~~~~~~g~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~ 254 (765)
T PRK08255 177 AFEETEHGWFQAHAYRFDDDTSTFIVET--PEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINF 254 (765)
T ss_pred EEEecCCceEEEEEeeeCCCCcEEEEEc--CHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeec
Confidence 111111111 112221212233222 111 012233455544444444432211111111 1122543
Q ss_pred chhhhccceecCCe----EEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHH
Q 005056 347 HAEVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA 422 (716)
Q Consensus 347 ~~~~a~~~~~~~gR----V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~ 422 (716)
.....++|. .|| |+|+|||||.++|+.|||+|+||+||+.|++.|.... ...+.+|+.|+++|+++++.+++
T Consensus 255 ~~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~~~al~~ye~~R~~r~~~~~~ 330 (765)
T PRK08255 255 PRVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDLPAALAAYEEERRVEVLRIQN 330 (765)
T ss_pred ceeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 333467777 488 9999999999999999999999999999999998642 24688999999999999999999
Q ss_pred HHHHHHHHhcccccccCC
Q 005056 423 LSVQNFRAAMEVPSALGL 440 (716)
Q Consensus 423 ~s~~~~~~~~~~~~~~g~ 440 (716)
.|..+...+.......+.
T Consensus 331 ~s~~~~~~~~~~~~~~~~ 348 (765)
T PRK08255 331 AARNSTEWFENVERYAGL 348 (765)
T ss_pred HHHHhCceeeecchhhCC
Confidence 988765554433333333
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=2e-26 Score=249.80 Aligned_cols=311 Identities=21% Similarity=0.287 Sum_probs=180.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~----~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
+||+||||||+||++|+.|+++ ++|+||||++... ..+++..++++++++|+++ |+.........+. .+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~----~~- 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ----IF- 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc----cc-
Confidence 7999999999999999999999 9999999998543 3568899999999999999 8742111000000 00
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
.+..++.... ... ......+.++|..|+..|.+.+ +.++ ++++++++++
T Consensus 75 --------~~~~~~~~~~--~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~ 123 (351)
T PRK11445 75 --------AVKTIDLANS--LTR-NYQRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK 123 (351)
T ss_pred --------eeeEeccccc--chh-hcCCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence 0001111000 000 0111235689999999998854 4455 8999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
++++++++++++. ++|+ ..+++||+||+|||++|.+|++++...... .+.. +...+.... ..+. ..
T Consensus 124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~-~~~~-~~~~~~~~~-------~~~~-~~ 189 (351)
T PRK11445 124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQIR-KYVA-IQQWFAEKH-------PVPF-YS 189 (351)
T ss_pred EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCchh-hEEE-EEEEecCCC-------CCCC-cc
Confidence 9998888877653 2443 247899999999999999999987542211 1111 111222110 0011 11
Q ss_pred EEEecCc-eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecC
Q 005056 280 FIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (716)
Q Consensus 280 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~ 358 (716)
.+|+++. .++.+..+.. +.+.+... .+.....+.+ +...+.+++ ++....+. +.....+.+.......+...+
T Consensus 190 ~~f~~~~~~~~~W~~p~~-~~~~~g~~-~~~~~~~~~~--~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 263 (351)
T PRK11445 190 CIFDNEITDCYSWSISKD-GYFIFGGA-YPMKDGRERF--ETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFVCGK 263 (351)
T ss_pred eEEeccCCCceEEEeCCC-CcEEeccc-ccccchHHHH--HHHHHHHHh-cccccccc-cccccccccCcccccccccCC
Confidence 1222221 1222222221 22222100 0110000000 111222322 23221111 011111111111122232224
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHH
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a 417 (716)
+||+|||||||.++|++|+|+|.|+.|+..|++.|.+.. +..|+.|++..+...
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKLR 317 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHHH
Confidence 899999999999999999999999999999999987532 567999998877765
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.95 E-value=5.6e-25 Score=242.20 Aligned_cols=312 Identities=15% Similarity=0.144 Sum_probs=183.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
+||+||||||+|+++|+.|+++|++|+|+||+... ..+++..++. +.|+++ |+.+.+...... .... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~i~-----~~~~-~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRRVT-----KMKM-IS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhhhc-----eeEE-ec
Confidence 58999999999999999999999999999998643 4567777765 556777 776655432111 1111 11
Q ss_pred CCCCceeeccCCCccccccccCCc-cccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..+..+. +.. ...+. ....++|..|++.|.+++.+.|+ +++.++ +++++.
T Consensus 70 p~~~~~~-~~~--------~~~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~ 120 (398)
T TIGR02028 70 PSNIAVD-IGR--------TLKEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSL 120 (398)
T ss_pred CCceEEE-ecc--------CCCCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEe
Confidence 1111110 000 00011 12358999999999999999887 887775 767653
Q ss_pred ---cCCeEEEEEEecc----CCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCC
Q 005056 203 ---TDQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (716)
Q Consensus 203 ---~~~gv~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~ 275 (716)
.++.+++++...+ .|+ ..+|+|++||+|||++|.||+.+|+... .....+...+..+.. .. ...+
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~~g~--~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~-~~--~~~~ 192 (398)
T TIGR02028 121 PADADDPYTLHYISSDSGGPSGT--RCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDE-KM--AYYD 192 (398)
T ss_pred ccCCCceEEEEEeeccccccCCC--ccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChh-hc--ccCC
Confidence 2345555554222 132 3579999999999999999999986421 111111111211110 00 0011
Q ss_pred ceEEEEE----ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCceeEE--eeccceechh
Q 005056 276 GMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI--DIKPWVMHAE 349 (716)
Q Consensus 276 ~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~--~~~~w~~~~~ 349 (716)
....+++ .|+..+|+++.. +...+.+..... ....+.+.+.++..........++. ...+++. .
T Consensus 193 ~~~~~~~g~~~~p~gY~WifP~~---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~--~ 262 (398)
T TIGR02028 193 DLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVAA-----KPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPE--H 262 (398)
T ss_pred CeEEEEeCCCCCCCceEEEEECC---CeEEEEEEeCCC-----CccHHHHHHhhhhhhhhccCCCcEEEEEEEeccc--c
Confidence 2222222 244445555443 222333321111 1122334444433211111111222 2223332 2
Q ss_pred hhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC---CchhHHHHHHHHHhH
Q 005056 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP 415 (716)
Q Consensus 350 ~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp 415 (716)
..+++. .+|++|+|||||.++|++|+|++.||.++..+|+.++..++.. .....|..|++.-+.
T Consensus 263 ~~~~~~--~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~ 329 (398)
T TIGR02028 263 PRPRRV--VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDK 329 (398)
T ss_pred ccccEE--CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence 334554 4899999999999999999999999999999999999877533 246789999986554
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.93 E-value=2.3e-23 Score=229.50 Aligned_cols=317 Identities=21% Similarity=0.205 Sum_probs=197.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCe-eeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a-~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
+++||+||||||+|+++|+.|++.|++|+|+||+..+..++++ ..+.++.++-+... ...+ +...- .....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~~~-i~~~v-----~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FDEE-IERKV-----TGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cchh-hheee-----eeeEEE
Confidence 5699999999999999999999999999999999999887777 88888887666543 2211 21111 011111
Q ss_pred eecCCCCceeeccCCCccccccccCC-ccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSP-VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p-~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
. . +..... ..+ ...+.++|..+++.|.+++.+.|+ +++.++++..
T Consensus 75 ~--~-~~~~~~------------~~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~ 120 (396)
T COG0644 75 F--P-GEKVAI------------EVPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTG 120 (396)
T ss_pred e--c-CCceEE------------ecCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEE
Confidence 1 1 111110 011 225678899999999999999998 9999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEE
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
+..+++++.+.+. .+. .++++++||+|||.+|.++++++............+.-....+ .......+
T Consensus 121 ~~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~-------~~~~~~~~ 187 (396)
T COG0644 121 VIREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVP-------DDGDVEEF 187 (396)
T ss_pred EEEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecC-------CCCceEEE
Confidence 9999988877665 232 4799999999999999999999987211111111111111111 01111111
Q ss_pred --EE--EecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCCCCc-----eeEEeec--cceech
Q 005056 280 --FI--FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIK--PWVMHA 348 (716)
Q Consensus 280 --~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-----~~i~~~~--~w~~~~ 348 (716)
+. ..+.+.+|+++ ..++...+.+...... ..... .. +.++++...+... .++.... ..+..
T Consensus 188 ~~~~~~~~~~Gy~wifP--~~~~~~~VG~g~~~~~---~~~~~-~~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~- 259 (396)
T COG0644 188 LYGPLDVGPGGYGWIFP--LGDGHANVGIGVLLDD---PSLSP-FL-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEG- 259 (396)
T ss_pred EecCCccCCCceEEEEE--CCCceEEEEEEEecCC---cCCCc-hH-HHHHHHHhCcccchhccCCceEEEeeeecccC-
Confidence 11 12233344443 3444455554422221 11111 11 3333333221110 1222221 11111
Q ss_pred hhhcc-ceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHHH
Q 005056 349 EVAEK-FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (716)
Q Consensus 349 ~~a~~-~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s 424 (716)
..... +. .++++|+||||..++|+.|.|+..||..|..+|..|...+.+. ...|..|+++.+..........
T Consensus 260 g~~~~~~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~ 332 (396)
T COG0644 260 GPASRPLV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKS 332 (396)
T ss_pred CcCCCccc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHH
Confidence 12222 33 4899999999999999999999999999999999999887655 6678889888776554444333
No 52
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.91 E-value=2.7e-23 Score=214.86 Aligned_cols=360 Identities=20% Similarity=0.237 Sum_probs=213.7
Q ss_pred ceeeeccCCCCCcccccccccccCCccCCC-CccCCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCC--CC---
Q 005056 11 NCFSRIKTFPYPYGYTQCRALSDSKTIVSN-EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF--ST--- 80 (716)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~--~~--- 80 (716)
||+..+ |.+.++............. ..++|||||||||+|+++|..|... ..++.|+|-...+ ..
T Consensus 8 ~~~~vr-----~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~ 82 (481)
T KOG3855|consen 8 RMSRVR-----AVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKP 82 (481)
T ss_pred cccccc-----ccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccccc
Confidence 555555 4556666665555433333 3479999999999999999999854 5799999987432 11
Q ss_pred ----CCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeecCCCCceeeccCCCccccccccCCccccccChHH
Q 005056 81 ----HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156 (716)
Q Consensus 81 ----~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~ 156 (716)
.-|-..+++++...|+.+ |.+|.+...-... ..+..-..+.....+. +++... ..+. .+.+.-..
T Consensus 83 ~~~f~Nrvss~s~~s~~~fk~~-~awd~i~~~R~~~--~~~~~v~Ds~s~a~I~-~~~d~~------~~d~-a~iien~n 151 (481)
T KOG3855|consen 83 SETFSNRVSSISPASISLFKSI-GAWDHIFHDRYQK--FSRMLVWDSCSAALIL-FDHDNV------GIDM-AFIIENDN 151 (481)
T ss_pred CccccceeecCCcchHHHHHhc-CHHHHhhhhcccc--ccceeeecccchhhhh-hccccc------cccc-eeeeehhH
Confidence 124567899999999999 9999885532111 1111111111111110 111000 0011 12222233
Q ss_pred HHHHHHH-HHHhcCceeecccccccccccccccceEEeCcEEEEEEe------cCCeEEEEEEeccCCceeeEEEEecEE
Q 005056 157 LNKLLLK-QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA------TDQCINVIASFLKEGKCTERNIQCNIL 229 (716)
Q Consensus 157 Le~~L~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~------~~~gv~v~v~~~~~g~~~~~~i~ad~V 229 (716)
+...|+. .+.+. .++++|....++..+.. ++.+-...+. ..+|. .+.+|+|
T Consensus 152 Iq~sL~~s~~~s~-----------------~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~-l~dg~----~~~~~LL 209 (481)
T KOG3855|consen 152 IQCSLYNSQLDSE-----------------SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHIT-LTDGI----NFATDLL 209 (481)
T ss_pred HHHHHHHHHHhhh-----------------cCceeeecccceeeeccccccCCCCCcceEEEE-eccCc----eeeecee
Confidence 3444442 22211 13458888888877765 2333333333 22442 7899999
Q ss_pred EecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCC
Q 005056 230 IGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPP 309 (716)
Q Consensus 230 VgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (716)
|||||.+|.||+..++++.+..+.++.+........- ...++..+..|-|.+...+.+....-..++|... ...
T Consensus 210 igAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~-----~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts-~~~ 283 (481)
T KOG3855|consen 210 IGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEE-----AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTS-PEN 283 (481)
T ss_pred eccccccchhhhhcCCCcccccccceeeeEEEEeccc-----ccccchhHHhcCCCCceeecccccccccceeecC-HHH
Confidence 9999999999999999999888777665443322110 1123445556666655444444333345555432 000
Q ss_pred CCCCCCCCHHHHHHHHHHH-------------------------------cCC------CCCceeEEe--eccceechhh
Q 005056 310 QQNLEDFSPEICEKLIFKL-------------------------------VGW------ELSDIDVID--IKPWVMHAEV 350 (716)
Q Consensus 310 ~~~~~~~~~e~~~~~i~~~-------------------------------~g~------~~~~~~i~~--~~~w~~~~~~ 350 (716)
...+..+++|.+.+++... .+. ++.-+++.+ ...+++....
T Consensus 284 a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~h 363 (481)
T KOG3855|consen 284 ASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGH 363 (481)
T ss_pred HHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeeccccccc
Confidence 1112222322222222111 110 111123322 2346778888
Q ss_pred hccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc-C--CCchhHHHHHHHHHhHH
Q 005056 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPI 416 (716)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~ 416 (716)
++.|. ..|+.|+|||||.++|..|||.|+|+.|+..|...|..++. | .++..-|+.|+.+|.+.
T Consensus 364 a~~yV--~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~ 430 (481)
T KOG3855|consen 364 ADEYV--TDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQH 430 (481)
T ss_pred HHHhc--CCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhh
Confidence 99998 59999999999999999999999999999999999998763 3 34567799999999654
No 53
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.91 E-value=2.8e-21 Score=212.81 Aligned_cols=305 Identities=17% Similarity=0.227 Sum_probs=171.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccce-eEEeec
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK-FIYCTS 123 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~-~~~~~~ 123 (716)
||+||||||+|+++|+.|++.|++|+|||+++... .++...+... .+.++ ++.+.+.. .|.. ..+. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~---~~~~~-~~~~~~~~------~~~~~~~~~-~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDD---DLSDL-GLADCVEH------VWPDVYEYR-F 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHh---hhhhh-chhhHHhh------cCCCceEEe-c
Confidence 79999999999999999999999999999987542 2223333332 23444 54332221 1111 1111 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
.+... ..+.....+++..|.+.|.+.+.+.|+ +++ ..++++++.+
T Consensus 69 -~~~~~--------------~~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~ 113 (388)
T TIGR01790 69 -PKQPR--------------KLGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEAD 113 (388)
T ss_pred -CCcch--------------hcCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEec
Confidence 00000 012234468899999999999988776 664 5578888776
Q ss_pred -CCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEE
Q 005056 204 -DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (716)
Q Consensus 204 -~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 282 (716)
++.+.+++. +|+ +++|++||+|||.+|.+++...... ..++....+.+..... .. .. ....++-+
T Consensus 114 ~~~~~~v~~~---~g~----~~~a~~VI~A~G~~s~~~~~~~~~~---~~~q~~~G~~~~~~~~-~~--~~-~~~~~~d~ 179 (388)
T TIGR01790 114 GVALSTVYCA---GGQ----RIQARLVIDARGFGPLVQYVRFPLN---VGFQVAYGVEARLSRP-PH--GP-SSMVIMDA 179 (388)
T ss_pred CCceeEEEeC---CCC----EEEeCEEEECCCCchhcccccCCCC---ceEEEEEEEEEEEcCC-CC--CC-CceEEEec
Confidence 555555543 442 6899999999999997764321111 1122333333322110 00 00 11111111
Q ss_pred ecC----------ceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHc---CCCCCceeEEeeccceechh
Q 005056 283 NTE----------AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE 349 (716)
Q Consensus 283 ~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~~ 349 (716)
... ..++++..+..++...+...... .....+.+.+.+.+.+.+ +.....+.......+++...
T Consensus 180 ~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~ 256 (388)
T TIGR01790 180 RVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA---DRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLP 256 (388)
T ss_pred cccccccccccCCCCceEEEeecCCCeEEEEecccc---CCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccC
Confidence 100 00122223333333222111111 112345555666665544 33322222112222233222
Q ss_pred hhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHH
Q 005056 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (716)
Q Consensus 350 ~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~ 418 (716)
. + +. .+||+++|||||.++|++|+|+|.+++++..||+.|++.++.. ...+++.|+..-++...
T Consensus 257 ~-~-~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 320 (388)
T TIGR01790 257 G-P-FL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERR 320 (388)
T ss_pred C-C-cc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHH
Confidence 2 1 22 4899999999999999999999999999999999999887543 46888999765555443
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.91 E-value=6.4e-22 Score=219.66 Aligned_cols=332 Identities=14% Similarity=0.182 Sum_probs=178.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-CeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p-~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
+.++||+||||||+|+++|+.|+++|++|+||||.+.+.... ++..++..+++.+- +++..+ ............
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~--~~~~~~---~~i~~~~~~~~~ 77 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII--PGFAAS---APVERKVTREKI 77 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc--cccccc---CCccccccceeE
Confidence 456999999999999999999999999999999998775442 44555555544431 233210 000000001111
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
......+... ++.... ... ..+...+.+.|..|++.|.+++++.|+ +++++++|++
T Consensus 78 ~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~V~~ 133 (429)
T PRK10015 78 SFLTEESAVT--LDFHRE-QPD--VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVRVDA 133 (429)
T ss_pred EEEeCCCceE--eecccC-CCC--CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcEEEE
Confidence 1111111111 111100 000 112234678899999999999999887 8999999999
Q ss_pred EEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEE--EecC-c-ccccc-ccCC
Q 005056 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVH--FLSK-D-LGDYL-LNER 274 (716)
Q Consensus 200 i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~--~~~~-~-l~~~~-~~~~ 274 (716)
+..+++.++.... ++ .+++|++||+|||.+|.+++.+++...... ....+.+. +..+ + +.... ....
T Consensus 134 i~~~~~~v~~v~~---~~----~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~-~~~~~gvk~~~~~~~~~i~~~~~~~~~ 205 (429)
T PRK10015 134 LVREGNKVTGVQA---GD----DILEANVVILADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNITGE 205 (429)
T ss_pred EEEeCCEEEEEEe---CC----eEEECCEEEEccCcchhhhcccCCCcCCCc-CeEEEEEEEEEeCCHHHhhHhhcCCCC
Confidence 9877666543322 22 368999999999999999999987432211 11112221 1111 0 00100 0111
Q ss_pred CceEEEEEe-cCc----eEEEEEecCCCCeEEEEEec-CCCCCCCCCCCHHHHHHHHHHHc--CCCCCceeEEeecccee
Q 005056 275 PGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPF-YPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPWVM 346 (716)
Q Consensus 275 ~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~i~~~~--g~~~~~~~i~~~~~w~~ 346 (716)
.+..++++. +.. .|++... .+...+.+.. ...... ...+.....+.+++.. ......-+........+
T Consensus 206 ~g~~w~~~g~~~~g~~g~G~~~~~---~d~v~vGv~~~~~~~~~-~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~i 281 (429)
T PRK10015 206 EGAAWLFAGSPSDGLMGGGFLYTN---KDSISLGLVCGLGDIAH-AQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMV 281 (429)
T ss_pred CCeEEEecCccCCCCCCceEEEEc---CCcEEEEEEEehhhhcc-CCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEc
Confidence 222222221 111 2333332 1233332211 100000 1112222222222110 00000112222111111
Q ss_pred c-h--hhhccceecCCeEEEEccCCccCC--CCCCccchhhHhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHhH
Q 005056 347 H-A--EVAEKFLCCYNQIILAGDACHRFP--PAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKP 415 (716)
Q Consensus 347 ~-~--~~a~~~~~~~gRV~LvGDAAH~~~--P~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp 415 (716)
. . ...++.. .++++++||||..++ |+.|.||+.||..+..+|..+...++ +..+...|..|++.-+.
T Consensus 282 p~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~ 354 (429)
T PRK10015 282 PEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQ 354 (429)
T ss_pred ccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 1 1 0122333 489999999999998 46999999999999999999988775 44456778999976553
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.89 E-value=1e-20 Score=210.33 Aligned_cols=331 Identities=16% Similarity=0.199 Sum_probs=179.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-CeeeeChhHHHHHHhhhchHHHHHhcCCCccc---cc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL---WR 116 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p-~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~---~~ 116 (716)
..++||+||||||+|+++|+.|+++|++|+||||.+.+..+. ++..+...+++.+ ++.+. ... +.+. ..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~~-~~~~~~~~~ 75 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DSA-PVERLITHE 75 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hcC-cccceeeee
Confidence 346999999999999999999999999999999998775443 3445555554433 11121 111 1110 01
Q ss_pred eeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcE
Q 005056 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (716)
Q Consensus 117 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~ 196 (716)
.+.+. ...+.. .++....... ..+...+.+.|..|++.|.+.+++.|+ +++++++
T Consensus 76 ~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~ 130 (428)
T PRK10157 76 KLAFM-TEKSAM--TMDYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR 130 (428)
T ss_pred eEEEE-cCCCce--eecccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence 11111 111211 1111110000 112234567899999999999999887 9999999
Q ss_pred EEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEE--ecCc--c-ccccc
Q 005056 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF--LSKD--L-GDYLL 271 (716)
Q Consensus 197 v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~--~~~~--l-~~~~~ 271 (716)
|++++++++.+..... ++. +++|++||+|||.+|.+++++|+...-. .....+.+.. ..+. . ..+..
T Consensus 131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~ 202 (428)
T PRK10157 131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL 202 (428)
T ss_pred EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence 9999887776543221 332 6899999999999999999998753211 1111222211 1110 0 00111
Q ss_pred cCCCceEEEEEe-cCc----eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHcCCC--CCceeEEeeccc
Q 005056 272 NERPGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW 344 (716)
Q Consensus 272 ~~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~~~~~w 344 (716)
....+..+++.. +.. .|++... .+...+.+-...........+.....+.+.+..... ...-+......+
T Consensus 203 ~~~~g~~~~~~g~~~~g~~ggG~~~~~---~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~ 279 (428)
T PRK10157 203 QGNQGAACLFAGSPTDGLMGGGFLYTN---ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH 279 (428)
T ss_pred CCCCCeEEEEEECCCCCCcCceeEEEc---CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence 112333322222 211 2333321 123333221111100001122222222222211100 000011111111
Q ss_pred eec---hhhhccceecCCeEEEEccCCccCCC--CCCccchhhHhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHhHH
Q 005056 345 VMH---AEVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI 416 (716)
Q Consensus 345 ~~~---~~~a~~~~~~~gRV~LvGDAAH~~~P--~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp~ 416 (716)
.+. ....+++. .++++++||||..++| +.|.|++.||..+..+|..+.+.++ +......|..|++.-+.-
T Consensus 280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~ 355 (428)
T PRK10157 280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG 355 (428)
T ss_pred HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 111 01112333 4899999999999998 5899999999999999999988775 334556899999654443
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.88 E-value=1.3e-19 Score=203.51 Aligned_cols=310 Identities=17% Similarity=0.275 Sum_probs=178.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
...+||+||||||+||++|+.|++.|++|+|||+.... ++..+++. +.++.+ |+.+.+... |.....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~~------w~~~~v 172 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEHV------WRDTIV 172 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHhh------cCCcEE
Confidence 44589999999999999999999999999999986322 22333443 356777 876655432 111111
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
... .+..+. ....+..+++..|.+.|.+++.+.|+ ++ ++++|+++
T Consensus 173 ~~~-~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I 217 (529)
T PLN02697 173 YLD-DDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI 217 (529)
T ss_pred Eec-CCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence 111 111110 01123368899999999999988776 66 67899999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCcccc-ccccceEEEEEecCccccccccCCCceEE
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~-~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 279 (716)
+++++++.+.+. .+|. +++|++||+|||++|. +.++....+. ...+....+.+..... .+ ... .+.+
T Consensus 218 ~~~~~~~~vv~~--~dG~----~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~-d~~--~~vl 285 (529)
T PLN02697 218 TEASDGLRLVAC--EDGR----VIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENN-PY-DPS--LMVF 285 (529)
T ss_pred EEcCCcEEEEEE--cCCc----EEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCC-CC-Ccc--hhee
Confidence 888777654332 2342 6899999999999993 2333222112 2234444444332211 01 011 1111
Q ss_pred EEEe-----------cCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHc---CCCCCceeEEeeccce
Q 005056 280 FIFN-----------TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWV 345 (716)
Q Consensus 280 ~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~ 345 (716)
+-+. .+...+++..+..+++..+--.+.. .....+.+.+++.+.+.+ |.....+........+
T Consensus 286 MD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iP 362 (529)
T PLN02697 286 MDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLA---SKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIP 362 (529)
T ss_pred eccccccccccccccCCCceEEEEeecCCCeEEEEEeeec---cCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeec
Confidence 1111 0012233333333333222110000 011224455555554443 4332222222222233
Q ss_pred echhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC----------CchhHHHHHHHHHhH
Q 005056 346 MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERKP 415 (716)
Q Consensus 346 ~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~----------a~~~lL~sY~~eRrp 415 (716)
+.... +.. .++++++||||..++|.+|+|+..++.+|..+|..|+..++.. .....+..|++....
T Consensus 363 m~g~~-~~~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~ 438 (529)
T PLN02697 363 VGGSL-PNT---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQ 438 (529)
T ss_pred CCCCC-ccc---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChH
Confidence 43322 222 3799999999999999999999999999999999999988533 235678888765554
Q ss_pred HH
Q 005056 416 IA 417 (716)
Q Consensus 416 ~a 417 (716)
..
T Consensus 439 e~ 440 (529)
T PLN02697 439 ER 440 (529)
T ss_pred HH
Confidence 43
No 57
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.86 E-value=7.2e-20 Score=199.23 Aligned_cols=298 Identities=12% Similarity=0.173 Sum_probs=160.1
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCC--ccccceeEE
Q 005056 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP--VDLWRKFIY 120 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~--~~~~~~~~~ 120 (716)
||+||||||+||++|+.|++. |++|+|+|+.+..... ++. .+-.. ++.+.+...-.+ ...|.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~--------~tw-~~~~~-~~~~~~~~~~~~~v~~~W~~~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN--------HTW-SFFDS-DLSDAQHAWLADLVQTDWPGYEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc--------ccc-eeccc-ccchhhhhhhhhhheEeCCCCEE
Confidence 799999999999999999987 9999999998743211 111 11112 232211110000 011222111
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.... ... ..+..+..+.+..|.+.|.+++. . .|+++++|+++
T Consensus 71 ~~~~---------------~~~-~l~~~Y~~I~r~~f~~~l~~~l~---~-------------------~i~~~~~V~~v 112 (370)
T TIGR01789 71 RFPK---------------YRR-KLKTAYRSMTSTRFHEGLLQAFP---E-------------------GVILGRKAVGL 112 (370)
T ss_pred ECcc---------------hhh-hcCCCceEEEHHHHHHHHHHhhc---c-------------------cEEecCEEEEE
Confidence 1100 000 01123457788889888876553 2 36778999988
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceE-E
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML-F 279 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-~ 279 (716)
+.++|+ +. +|+ +++|++||+|||.+|..... ..++.++.+..+.. ..+ ....+..+ +
T Consensus 113 --~~~~v~--l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~--~p~-~~~~~~lMD~ 170 (370)
T TIGR01789 113 --DADGVD--LA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQ--EPH-GLENPIIMDA 170 (370)
T ss_pred --eCCEEE--EC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEc--CCC-CCCccEEEee
Confidence 345544 33 453 78999999999999752211 23455555544432 111 11111111 1
Q ss_pred EEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHc---CCCCCceeEEeeccceech--hhhccc
Q 005056 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHA--EVAEKF 354 (716)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~--~~a~~~ 354 (716)
-+-+.+...+++..+..+++..+--++..+ ....+.+...+.+++.+ |.....+........++.. .....+
T Consensus 171 ~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~---~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~ 247 (370)
T TIGR01789 171 TVDQLAGYRFVYVLPLGSHDLLIEDTYYAD---DPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQ 247 (370)
T ss_pred eccCCCCceEEEECcCCCCeEEEEEEeccC---CCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCccccc
Confidence 111122222333344444443332221111 12234455544444432 4443333222222223321 112122
Q ss_pred eecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHH
Q 005056 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (716)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~ 418 (716)
.. +++|+++|||||.++|.+|||++.+++||..|+..+. +++.....++..|..+|+++..
T Consensus 248 ~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~ 308 (370)
T TIGR01789 248 DE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAAFIDSRARRHWSKTG 308 (370)
T ss_pred cc-CCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhhhhhHHHHHHHHHhH
Confidence 22 3679999999999999999999999999999998773 1232233457889988887765
No 58
>PLN02463 lycopene beta cyclase
Probab=99.84 E-value=9e-19 Score=194.05 Aligned_cols=292 Identities=15% Similarity=0.189 Sum_probs=168.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
...+||+||||||+||++|+.|+++|++|+|||+++.. ..|+...+. .+.|+++ |+.+.+...... ..++
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~-~~p~~~g~w---~~~l~~l-gl~~~l~~~w~~-----~~v~ 95 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS-IWPNNYGVW---VDEFEAL-GLLDCLDTTWPG-----AVVY 95 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc-hhccccchH---HHHHHHC-CcHHHHHhhCCC-----cEEE
Confidence 44589999999999999999999999999999997643 223332222 3567777 888777543211 1112
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
... +... ........+++..|.+.|.+++.+.|+ +++ ..+|+++
T Consensus 96 ~~~--~~~~--------------~~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I 139 (447)
T PLN02463 96 IDD--GKKK--------------DLDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV 139 (447)
T ss_pred EeC--CCCc--------------cccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence 111 1000 011123467899999999999988776 665 5689999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEE
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 280 (716)
+++++++++++. +|. +++||+||+|||.+|.+++.-. .....++..+.+....... .+ . ...+.++
T Consensus 140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~-p~--d-~~~~vlM 205 (447)
T PLN02463 140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSH-PF--D-LDKMLFM 205 (447)
T ss_pred EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCC-Cc--c-cccchhh
Confidence 998888777664 453 7999999999999998875321 1122333333332221110 00 0 0001000
Q ss_pred EE--------------ecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHc---CCCCCceeEEeecc
Q 005056 281 IF--------------NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKP 343 (716)
Q Consensus 281 ~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~ 343 (716)
-+ +.....+++..+..++++.+-....- .....+.+.+++.+.+.+ |.....+.......
T Consensus 206 D~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~---s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~ 282 (447)
T PLN02463 206 DWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLV---ARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCV 282 (447)
T ss_pred hcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeee---cCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeE
Confidence 00 00001222223323232211110000 011234445555554443 43222222111112
Q ss_pred ceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcC
Q 005056 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399 (716)
Q Consensus 344 w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g 399 (716)
.++.. ..+.+ .+||+++||||..++|.+|+|+-.++..+..+|..++..++.
T Consensus 283 IPmg~-~~~~~---~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 283 IPMGG-PLPVI---PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred eeCCC-CCCCC---CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 22322 22223 379999999999999999999999999999999999998864
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.81 E-value=5.8e-18 Score=188.72 Aligned_cols=334 Identities=17% Similarity=0.224 Sum_probs=181.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCC---CCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHH--HHhcCCCcccccee-
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVDLWRKF- 118 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G---i~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~--l~~~~~~~~~~~~~- 118 (716)
||+|||||++|.++|+.|++.+ ++|+|||+...+... -|....|....+++.+ ||.+. +.+.....+.-..+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~-vGe~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~ 78 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIG-VGESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV 78 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---S-SEEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCC-ccccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence 6999999999999999999998 999999999877544 4667778888899999 99877 55554322211111
Q ss_pred -------EEeecC--CCCceeeccC----------CCcc---------------ccccc-----cCCccccccChHHHHH
Q 005056 119 -------IYCTSV--TGPILGSVDH----------MQPQ---------------DFEKV-----VSPVSVAHFSQYKLNK 159 (716)
Q Consensus 119 -------~~~~~~--~g~~l~~~~~----------~~~~---------------~~~~~-----~~p~~~~~i~q~~Le~ 159 (716)
.+.... .|..+...+. .... .+... ..-...++++|..+++
T Consensus 79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~ 158 (454)
T PF04820_consen 79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ 158 (454)
T ss_dssp SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence 111111 1111111000 0000 00000 0112247899999999
Q ss_pred HHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhh
Q 005056 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (716)
Q Consensus 160 ~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (716)
.|++.+.+.|+ +++.++ |+++..++++....+.. ++| .+|+|||+|+|+|.+|.+
T Consensus 159 ~L~~~A~~~Gv-------------------~~~~g~-V~~v~~~~~g~i~~v~~-~~g----~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 159 FLRRHAEERGV-------------------EVIEGT-VVDVELDEDGRITAVRL-DDG----RTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEE-TTS----EEEEESEEEE-SGGG-CC
T ss_pred HHHHHHhcCCC-------------------EEEeCE-EEEEEEcCCCCEEEEEE-CCC----CEEEEeEEEECCCccchh
Confidence 99999999998 777774 78888777765444542 244 379999999999999998
Q ss_pred hhh-cCCCcccccccc---ceEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCC
Q 005056 240 RKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLED 315 (716)
Q Consensus 240 R~~-lgi~~~g~~~~~---~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (716)
.++ |+.++....... ..+.+.....+ ...+.... ...+.++.+.++... +... ..-+.. ..
T Consensus 214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~~-~a~~~GW~W~IPL~~--~~~~-G~V~s~-----~~ 278 (454)
T PF04820_consen 214 ARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTRS-TAFEAGWIWYIPLQN--RRGS-GYVYSS-----DF 278 (454)
T ss_dssp CCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEEE-EEESSEEEEEEEESS--EEEE-EEEEET-----TT
T ss_pred hHhhhcCCCccccccccccEEEEEecCcCC------CCCCceeE-EecCCceEEEccCCC--cceE-EEEecc-----cc
Confidence 776 444433222111 12222222111 11122222 222333334444332 2211 211111 12
Q ss_pred CCHHHHHHHHHHHcCCCCCce-eEEeeccceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHH
Q 005056 316 FSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394 (716)
Q Consensus 316 ~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa 394 (716)
.+++...+.+.+.++...... ..+... ....+++. .+|+++|||||..++|..+.|+.+++..+..|+..|.
T Consensus 279 ~s~~~A~~~l~~~l~~~~~~~~~~i~~~-----~g~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~ 351 (454)
T PF04820_consen 279 ISDDEAEAELLAYLGGSPEAEPRHIRFR-----SGRRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP 351 (454)
T ss_dssp SHHHHHHHHHHHHHTCHCTTSCEEEE-S------EEESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHhcchhhhcchhhhccc-----ccchhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc
Confidence 244444444555544321111 222221 11234444 3899999999999999999999999997777666654
Q ss_pred HHHcCCCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005056 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (716)
Q Consensus 395 ~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (716)
.+...+.+++.|++..+...+.+.+.-...|..
T Consensus 352 ---~~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~ 384 (454)
T PF04820_consen 352 ---DDDFSPAALDRYNRRMRREYERIRDFISLHYQL 384 (454)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344457899999999888888777766555543
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.80 E-value=6.6e-18 Score=173.15 Aligned_cols=350 Identities=18% Similarity=0.165 Sum_probs=205.4
Q ss_pred cccCCccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCC
Q 005056 31 LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP 110 (716)
Q Consensus 31 ~~~~~~~~~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~ 110 (716)
.++.....+....+||+|||||.+|.++|..|+|.|-+|.||||+-.-.++--|..++|.+...|.++ |+.|.++....
T Consensus 33 ~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~IDA 111 (509)
T KOG1298|consen 33 VAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGIDA 111 (509)
T ss_pred cchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhcccc
Confidence 33333334556779999999999999999999999999999999987766777899999999999999 99999876542
Q ss_pred CccccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccce
Q 005056 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (716)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 190 (716)
..- ....++ .+|+... +.++ ..++.. ......+.-.++.+-|++.+...+. ++
T Consensus 112 Q~v-~Gy~if---k~gk~v~-~pyP-~~~f~~---d~~GrsFhnGRFvq~lR~ka~slpN------------------V~ 164 (509)
T KOG1298|consen 112 QRV-TGYAIF---KDGKEVD-LPYP-LKNFPS---DPSGRSFHNGRFVQRLRKKAASLPN------------------VR 164 (509)
T ss_pred eEe-eeeEEE---eCCceee-ccCC-CcCCCC---CcccceeeccHHHHHHHHHHhcCCC------------------eE
Confidence 211 011111 1333321 1111 112211 1113345556788888888876543 45
Q ss_pred EEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCcccccc
Q 005056 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (716)
Q Consensus 191 v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~ 270 (716)
+..|+ |.++-++++ |..-+...+.+ +++.+..|.+-|.|||..|..||.|--+.. ......++..-....++
T Consensus 165 ~eeGt-V~sLlee~g-vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~~~v-~~V~S~fVG~vl~N~~l---- 236 (509)
T KOG1298|consen 165 LEEGT-VKSLLEEEG-VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLRRSLCDPKV-EEVPSYFVGLVLKNCRL---- 236 (509)
T ss_pred Eeeee-HHHHHhccC-eEEeEEEecCC-CceEEEecceEEEecchhHHHHHHhcCCcc-cccchheeeeeecCCCC----
Confidence 54444 444444443 32222222222 234678899999999999999999843211 11233333332222221
Q ss_pred ccCCCceEEEEEecCceEEEEEecCCCCeEEEEEecCCCCCCCCCCC----------------HHHHHHHHHHHcCCCCC
Q 005056 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS----------------PEICEKLIFKLVGWELS 334 (716)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~~~~i~~~~g~~~~ 334 (716)
..+...+.++......++...... +..+.+.+.++ .+.... ++.+++.+.+.+...
T Consensus 237 --~~p~hghvIL~~pspil~Y~ISSt--EvRcl~~v~g~--~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g-- 308 (509)
T KOG1298|consen 237 --PAPNHGHVILSKPSPILVYQISST--EVRCLVDVPGQ--KLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEG-- 308 (509)
T ss_pred --CCCCcceEEecCCCcEEEEEecch--heEEEEecCcc--cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhcc--
Confidence 123344555544334444443322 22222222121 111111 122333333322211
Q ss_pred ceeEEeeccceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc---CCCchhHHHHHHH
Q 005056 335 DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYET 411 (716)
Q Consensus 335 ~~~i~~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~ 411 (716)
. +.+ .+.....+.... +..++|+|||-..-+|..|.||..++.|+..|-.+|.-+.+ ...-...+.+|..
T Consensus 309 ~--irs---mpn~~mpa~~~~--~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~ 381 (509)
T KOG1298|consen 309 N--IRS---MPNSSMPATLND--KKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYW 381 (509)
T ss_pred c--hhc---CccccCCCCcCC--CCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 1 111 111222233332 47899999999999999999999999999999988865321 1122356789999
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 005056 412 ERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 412 eRrp~a~~~~~~s~~~~~~~ 431 (716)
+|+|.+..+.-++...++.+
T Consensus 382 ~RKp~s~tINtLa~Aly~vf 401 (509)
T KOG1298|consen 382 IRKPYSATINTLANALYQVF 401 (509)
T ss_pred hhcchhHHHHHHHHHHHHHh
Confidence 99999887777777666654
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.78 E-value=8.7e-17 Score=175.74 Aligned_cols=281 Identities=16% Similarity=0.272 Sum_probs=157.9
Q ss_pred CEEEECCCHHHHHHHHHH--HhCCCCEEEECCCCCCC-CCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~L--ar~Gi~v~liEr~~~~~-~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
||+||||||+||++|..| ++.|.+|+|||+++... ..-+...+... .+ +..+.+.... |......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~-~~~~~~v~~~-----w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DL-GPLDSLVSHR-----WSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cc-cchHHHHhee-----cCceEEE
Confidence 899999999999999999 88899999999987651 11111111111 11 2112222211 2211111
Q ss_pred ecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~ 201 (716)
.. .+... .....+..+++..|.+.|.+++. .+. .++++.+|++++
T Consensus 69 ~~-~~~~~--------------~~~~~Y~~i~~~~f~~~l~~~~~-~~~-------------------~~~~~~~V~~i~ 113 (374)
T PF05834_consen 69 FP-DGSRI--------------LIDYPYCMIDRADFYEFLLERAA-AGG-------------------VIRLNARVTSIE 113 (374)
T ss_pred eC-CCceE--------------EcccceEEEEHHHHHHHHHHHhh-hCC-------------------eEEEccEEEEEE
Confidence 11 11000 11123457899999999999988 443 678899999999
Q ss_pred ecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceE-EE
Q 005056 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML-FF 280 (716)
Q Consensus 202 ~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-~~ 280 (716)
.+++++.+++. +|. +++|++||+|+|..|...+. ..+++++.+...... ..+ ....+..+ |.
T Consensus 114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~--------~~~Q~f~G~~v~~~~-~~f-~~~~~~lMD~r 176 (374)
T PF05834_consen 114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARP--------LGLQHFYGWEVETDE-PVF-DPDTATLMDFR 176 (374)
T ss_pred ecCceEEEEEC---CCC----EEEeeEEEECCCcccccccc--------cccceeEEEEEeccC-CCC-CCCceEEEEec
Confidence 99887666654 553 79999999999977762221 223445444433321 101 11111111 11
Q ss_pred EEec-CceEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHH---cCCCCCceeEEeeccceec-hhhhccce
Q 005056 281 IFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMH-AEVAEKFL 355 (716)
Q Consensus 281 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~---~g~~~~~~~i~~~~~w~~~-~~~a~~~~ 355 (716)
.-+. +...+++..+...++..+...+..+. ...+.+.+.+.+++. .|....++.-......++. ......+
T Consensus 177 ~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~---~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~- 252 (374)
T PF05834_consen 177 VPQSADGPSFLYVLPFSEDRALVEETSFSPR---PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRF- 252 (374)
T ss_pred ccCCCCCceEEEEEEcCCCeEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCcccc-
Confidence 1111 22334444444444443322222111 123444454444443 4544333322223334442 1222233
Q ss_pred ecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHH
Q 005056 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395 (716)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~ 395 (716)
.++|+.+|+||..+.|.+|+++-.+++.|..+|..|..
T Consensus 253 --~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 253 --GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred --CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999888888888777764
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.38 E-value=3.3e-12 Score=131.86 Aligned_cols=144 Identities=18% Similarity=0.248 Sum_probs=96.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC--Ce-----eeeChhHHHHHHhhhchHHHHHhcCCCcc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVD 113 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p--~a-----~~i~~rtmeilr~l~Gl~~~l~~~~~~~~ 113 (716)
..++||+||||||+||++|+.|++.|++|+|+||+..+.... .+ ..+....+++|+++ |+ +..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~-gv---------~~~ 92 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF-GI---------RYK 92 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC-CC---------Cce
Confidence 456899999999999999999999999999999998653211 11 11222333333333 32 110
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEe
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~ 193 (716)
. . ....+.+++..+...|.+++.+.|+ ++++
T Consensus 93 ~-----~-------------------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~ 123 (257)
T PRK04176 93 E-----V-------------------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN 123 (257)
T ss_pred e-----e-------------------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence 0 0 0001235677888899999998887 9999
Q ss_pred CcEEEEEEecCC-eEEE-EEEec---cCCc-eeeEEEEecEEEecCCCChhhhhhc
Q 005056 194 GHECVSVSATDQ-CINV-IASFL---KEGK-CTERNIQCNILIGTDGAGSTVRKLV 243 (716)
Q Consensus 194 g~~v~~i~~~~~-gv~v-~v~~~---~~g~-~~~~~i~ad~VVgADG~~S~VR~~l 243 (716)
+++|+++..+++ .+.- .+... ..+. ....+|+|++||.|+|.+|.+.+.+
T Consensus 124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 999999987655 3321 11110 0110 1135899999999999999998877
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=1.7e-11 Score=126.19 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=94.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC--Ce-----eeeChhHHHHHHhhhchHHHHHhcCCCcc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVD 113 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p--~a-----~~i~~rtmeilr~l~Gl~~~l~~~~~~~~ 113 (716)
..++||+||||||+||++|+.|+++|++|+|+||+..+.... .+ ..+...+.++++++ |+ +..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~-gi---------~~~ 88 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF-GI---------RYE 88 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC-CC---------Cee
Confidence 346899999999999999999999999999999998753211 11 11122233333333 22 100
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEe
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~ 193 (716)
. .+ ......++..+...|.+++.+.|+ ++++
T Consensus 89 ~----------~~--------------------~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~ 119 (254)
T TIGR00292 89 D----------EG--------------------DGYVVADSAEFISTLASKALQAGA-------------------KIFN 119 (254)
T ss_pred e----------cc--------------------CceEEeeHHHHHHHHHHHHHHcCC-------------------EEEC
Confidence 0 00 001123566788889999988887 9999
Q ss_pred CcEEEEEEecCCe--EEEEEEe-c---cCCc-eeeEEEEecEEEecCCCChhhhhhc
Q 005056 194 GHECVSVSATDQC--INVIASF-L---KEGK-CTERNIQCNILIGTDGAGSTVRKLV 243 (716)
Q Consensus 194 g~~v~~i~~~~~g--v~v~v~~-~---~~g~-~~~~~i~ad~VVgADG~~S~VR~~l 243 (716)
++++.++..++++ |.-.+.. . ..+. ....+|+|++||.|+|..|.+.+.+
T Consensus 120 ~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 120 GTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 9999999887663 3222211 0 0110 1135899999999999998877655
No 64
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.26 E-value=1.4e-10 Score=117.88 Aligned_cols=189 Identities=21% Similarity=0.189 Sum_probs=110.7
Q ss_pred ecEEEecCCCChhhhhhcCCCccccccccceEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEEe
Q 005056 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305 (716)
Q Consensus 226 ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 305 (716)
|.+.|.|||..|..||.+.- .-......++.......++ ..+...+.+.......++......+-+..+-++
T Consensus 2 A~LtivaDG~~S~fRk~l~~--~~~~v~S~fvGl~l~~~~l------p~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp 73 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSD--NKPQVRSYFVGLILKDAPL------PKPNHGHVILGKPGPILLYQISSNETRVLVDVP 73 (276)
T ss_pred CCEEEEecCCchHHHHhhcC--CCCceeeeEEEEEEcCCCC------CCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence 67999999999999999872 2233344455444433222 123444555555444455544433333333333
Q ss_pred cC-CCCC---CCCCC--------CHHHHHHHHHHHcCCCCCceeEEeeccceechhhhccceecCCeEEEEccCCccCCC
Q 005056 306 FY-PPQQ---NLEDF--------SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP 373 (716)
Q Consensus 306 ~~-~~~~---~~~~~--------~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P 373 (716)
.. .|.. .+.++ =++.+++.+.+.+... .+.. ++.....+.... ..+++++|||++..+|
T Consensus 74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~--rirs-----MPn~~lp~~~~~--~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDG--RIRS-----MPNSFLPASPNW--KPGVVLLGDAANMRHP 144 (276)
T ss_pred CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccC--Ccce-----ecccccCCCCCC--CCCEEEEehhhcCcCC
Confidence 21 1110 00000 0122222233333221 2211 112222222222 3789999999999999
Q ss_pred CCCccchhhHhHHHHHHHHHHHH--HcCC-CchhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005056 374 AGGFGMNTGVQDAHNLAWKIASV--LKDI-APASILNTYETERKPIAEFNTALSVQNFRAA 431 (716)
Q Consensus 374 ~gG~G~n~gi~DA~~LawkLa~v--l~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (716)
.+|+||+.|+.|+..|+..|... +.++ +-.+.+++|+.+|++....+.-+|...|..+
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF 205 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLF 205 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 99999999999999999999876 2222 2356899999999999887777777666655
No 65
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.16 E-value=3.7e-09 Score=116.08 Aligned_cols=176 Identities=20% Similarity=0.279 Sum_probs=97.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCCeeeeC----hhHH-HH-HHhhhchHHHHHh-cCCCc
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFIN----NRYA-LV-FRKLDGLAEEIER-SQPPV 112 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~----~~p~a~~i~----~rtm-ei-lr~l~Gl~~~l~~-~~~~~ 112 (716)
+||+|||||++|+++|+.|+++|.+|+||||..... ....+..+. ...+ ++ .+.+ .+++++.+ .+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~-~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECY-QLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHH-HHHHHHHHHhCCee
Confidence 589999999999999999999999999999975431 111211111 1111 11 1112 23344432 12111
Q ss_pred cccceeEEeecCCCCceee-----------ccCCCcccccc-------------ccCCccccccChHHHHHHHHHHHHhc
Q 005056 113 DLWRKFIYCTSVTGPILGS-----------VDHMQPQDFEK-------------VVSPVSVAHFSQYKLNKLLLKQLEKL 168 (716)
Q Consensus 113 ~~~~~~~~~~~~~g~~l~~-----------~~~~~~~~~~~-------------~~~p~~~~~i~q~~Le~~L~~~~~~~ 168 (716)
.......+........+.. .......+..+ ...|. ...++-..+.+.|.+.+++.
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~-~g~i~p~~~~~~l~~~~~~~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPN-GGVLYAEKALRALQELAEAH 158 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCC-CcEEcHHHHHHHHHHHHHHc
Confidence 1111111111100000000 00000000000 00111 12445567778888888888
Q ss_pred CceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCC-hhhhhhcCCCc
Q 005056 169 NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG-STVRKLVGIDL 247 (716)
Q Consensus 169 g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~-S~VR~~lgi~~ 247 (716)
|+ +++++++|++++.+++.+++++. ++ ++++|.||.|.|.. |.+++.+++..
T Consensus 159 g~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 159 GA-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred CC-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEEEecCcchHHHhhhcccCC
Confidence 77 89999999999988777665432 33 58899888888875 77888887654
Q ss_pred c
Q 005056 248 V 248 (716)
Q Consensus 248 ~ 248 (716)
.
T Consensus 212 ~ 212 (380)
T TIGR01377 212 P 212 (380)
T ss_pred C
Confidence 4
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.16 E-value=4e-10 Score=118.70 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=98.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC------CCCeeeeChhH-HHHHHhhhchHHHHHhc---CC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRY-ALVFRKLDGLAEEIERS---QP 110 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~------~p~a~~i~~rt-meilr~l~Gl~~~l~~~---~~ 110 (716)
|+.+||+||||||+||.+|..++++|.+|+|||+.+.+.. .+++.+.|... -+++.+.||=...++.. -.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 3568999999999999999999999999999999997743 33444444332 23444443211111111 11
Q ss_pred CccccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccce
Q 005056 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (716)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 190 (716)
+.+.. .|+. ..|-.+..-+.. + ..|. .-.-..+.+.|..++++.|+ +
T Consensus 81 ~~d~i---~~~e-~~Gi~~~e~~~G------r-~Fp~---sdkA~~Iv~~ll~~~~~~gV-------------------~ 127 (408)
T COG2081 81 PEDFI---DWVE-GLGIALKEEDLG------R-MFPD---SDKASPIVDALLKELEALGV-------------------T 127 (408)
T ss_pred HHHHH---HHHH-hcCCeeEEccCc------e-ecCC---ccchHHHHHHHHHHHHHcCc-------------------E
Confidence 11110 0000 011111110000 0 0010 11234577888999999998 9
Q ss_pred EEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 191 v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
|+.+++|.+++.++++..+... +|+ +|+||-||-|-|..|.
T Consensus 128 i~~~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S~ 168 (408)
T COG2081 128 IRTRSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKSW 168 (408)
T ss_pred EEecceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcCC
Confidence 9999999999999877666554 553 7999999999999884
No 67
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.15 E-value=1.6e-08 Score=115.05 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=55.9
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEE
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VV 230 (716)
.++...|...|...+.+.|+ +++.+++|+++..+++.+.+++.+.. | ++.+|+|++||
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~-g--~~~~i~a~~VV 208 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGA-------------------TILTRTRCVSARREGGLWRVETRDAD-G--ETRTVRARALV 208 (502)
T ss_pred eecHHHHHHHHHHHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEEeCC-C--CEEEEEecEEE
Confidence 45677888888888888887 99999999999988777777665322 3 35689999999
Q ss_pred ecCCCChh-hhh-hcCC
Q 005056 231 GTDGAGST-VRK-LVGI 245 (716)
Q Consensus 231 gADG~~S~-VR~-~lgi 245 (716)
.|+|++|. +.+ .+|.
T Consensus 209 nAaG~wa~~l~~~~~g~ 225 (502)
T PRK13369 209 NAAGPWVTDVIHRVAGS 225 (502)
T ss_pred ECCCccHHHHHhhccCC
Confidence 99999875 444 3354
No 68
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.13 E-value=2.4e-08 Score=113.61 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=54.3
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEE
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VV 230 (716)
.++...|...|.+.+.+.|+ +++.+++|+++..+++.+.+++.+..+|+ ..+|+|++||
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g~--~~~i~a~~VV 209 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATGK--RYTVRARALV 209 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCCC--EEEEEcCEEE
Confidence 34556666677777888887 99999999999887777777666433443 3579999999
Q ss_pred ecCCCChh-hhhh-cCC
Q 005056 231 GTDGAGST-VRKL-VGI 245 (716)
Q Consensus 231 gADG~~S~-VR~~-lgi 245 (716)
.|.|++|. +.+. +|+
T Consensus 210 nAaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 210 NAAGPWVKQFLDDGLGL 226 (508)
T ss_pred ECCCccHHHHHhhccCC
Confidence 99999874 4443 354
No 69
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.11 E-value=4e-09 Score=118.78 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred cccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecC-CeEEEEEEeccCCceeeEEEEecE
Q 005056 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNI 228 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~-~gv~v~v~~~~~g~~~~~~i~ad~ 228 (716)
..++-..+...|.+.+.+.|+ +|+++++|++++.++ +++++++...++|+ ..+++|++
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~--~~~i~A~~ 231 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTGG--KRTLNTRF 231 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCCc--eEEEECCE
Confidence 356677888889888888887 999999999999865 45666654333342 24689999
Q ss_pred EEecCCC-ChhhhhhcCCCc-cccccccceEEEEEecCccccccccCCCceEEEEEecCceEEEEEe
Q 005056 229 LIGTDGA-GSTVRKLVGIDL-VGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAH 293 (716)
Q Consensus 229 VVgADG~-~S~VR~~lgi~~-~g~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 293 (716)
||.|-|+ .+.+++.+|+.. .+... ..+...++..+ ..... ....+.+|..-+|+...+.++|
T Consensus 232 VV~AAG~~s~~La~~~Gi~~~~~~~i-~P~~Gq~l~l~-~~~~~-~~~~~~IY~v~~p~~p~~~Vph 295 (483)
T TIGR01320 232 VFVGAGGGALPLLQKSGIPEVKGFAG-FPVSGLFLRCG-NPELT-EQHRAKVYGQASVGAPPMSVPH 295 (483)
T ss_pred EEECCCcchHHHHHHcCCCcCCCCce-eeeeEEEEEeC-CHHHH-hhcCeEEEecCCCCCCCcEEec
Confidence 9655555 467888888874 22222 12222233321 11111 1234556777766543444433
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.09 E-value=8.5e-09 Score=114.42 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=32.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~-Gi-~v~liEr~~ 76 (716)
...+||+|||||++|+++|+.|+++ |. +|+||||+.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 5669999999999999999999995 96 899999985
No 71
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.2e-09 Score=105.56 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCC-----eeeeChhHHHHHHhhhchHHHHHhcCCCcc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~--~p~-----a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~ 113 (716)
..+.||+||||||+||++|+.|++.|++|+||||+-.+.- ... ...+...+-++|+++ |+. .+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye 97 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YE 97 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------ce
Confidence 3458999999999999999999999999999999987632 222 234555666777776 542 10
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEe
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~ 193 (716)
... . ..+..+-..+...|..++-+.|. +|+-
T Consensus 98 ~~e--------~----------------------g~~v~ds~e~~skl~~~a~~aGa-------------------ki~n 128 (262)
T COG1635 98 EEE--------D----------------------GYYVADSAEFASKLAARALDAGA-------------------KIFN 128 (262)
T ss_pred ecC--------C----------------------ceEEecHHHHHHHHHHHHHhcCc-------------------eeee
Confidence 000 0 01223345566677788888887 7888
Q ss_pred CcEEEEEEecCC-eEEEEEEe-c---cCCc-eeeEEEEecEEEecCCCChhhhhh
Q 005056 194 GHECVSVSATDQ-CINVIASF-L---KEGK-CTERNIQCNILIGTDGAGSTVRKL 242 (716)
Q Consensus 194 g~~v~~i~~~~~-gv~v~v~~-~---~~g~-~~~~~i~ad~VVgADG~~S~VR~~ 242 (716)
++.|.++...++ +|.-.+.. . ..+. -.+.+|++++||.|.|--..|-+.
T Consensus 129 ~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 129 GVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred cceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHH
Confidence 888888876666 44322211 0 0010 013579999999999987665443
No 72
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.07 E-value=2.9e-09 Score=103.66 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=85.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-------CeeeeChhHHHHHHhhhchHHHHHhcCCCcc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-------QAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p-------~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~ 113 (716)
..++||+||||||+||++|+.|++.|++|+||||+..+...- ....+...+.++|+++ |+. ..
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~---------y~ 84 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIP---------YE 84 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Cce---------eE
Confidence 346899999999999999999999999999999998764321 1245566777888877 652 10
Q ss_pred ccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEe
Q 005056 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (716)
Q Consensus 114 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~ 193 (716)
... ...+..+-..+...|..++.+.|+ +|+-
T Consensus 85 ~~~------------------------------~g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn 115 (230)
T PF01946_consen 85 EYG------------------------------DGYYVADSVEFTSTLASKAIDAGA-------------------KIFN 115 (230)
T ss_dssp E-S------------------------------SEEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred EeC------------------------------CeEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence 000 001233455667777777777777 8888
Q ss_pred CcEEEEEEecC-CeEEEEEEe-c---cCC-ceeeEEEEecEEEecCCCChhhh
Q 005056 194 GHECVSVSATD-QCINVIASF-L---KEG-KCTERNIQCNILIGTDGAGSTVR 240 (716)
Q Consensus 194 g~~v~~i~~~~-~gv~v~v~~-~---~~g-~~~~~~i~ad~VVgADG~~S~VR 240 (716)
.+.|.++...+ +.|.-.+.. . ..| .-.+.+|+|++||.|.|-.+.|-
T Consensus 116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 88888887666 454433221 0 011 01145899999999999876543
No 73
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.05 E-value=1.5e-09 Score=119.00 Aligned_cols=141 Identities=23% Similarity=0.364 Sum_probs=77.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC------CCCeeeeC----------------hhHHHHHHhhhc-
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFIN----------------NRYALVFRKLDG- 100 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~------~p~a~~i~----------------~rtmeilr~l~G- 100 (716)
|||+||||||+||++|+.|++.|.+|+|+||++.+.. .+|....| ......|+++ +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence 6999999999999999999999999999999987632 23333222 1112333333 2
Q ss_pred --hHHHHHhcCCCccccceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeeccccc
Q 005056 101 --LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178 (716)
Q Consensus 101 --l~~~l~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~ 178 (716)
+.+-+.+.+.+... ...|+ ..|. .-.-..+...|.+.+++.|+
T Consensus 80 ~d~~~ff~~~Gv~~~~--------~~~gr----------------~fP~---s~~a~~Vv~~L~~~l~~~gv-------- 124 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKI--------EEDGR----------------VFPK---SDKASSVVDALLEELKRLGV-------- 124 (409)
T ss_dssp HHHHHHHHHTT--EEE---------STTE----------------EEET---T--HHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhcCCeEEE--------cCCCE----------------ECCC---CCcHHHHHHHHHHHHHHcCC--------
Confidence 22222333322210 00010 1111 11245677889999999988
Q ss_pred ccccccccccceEEeCcEEEEEEecCCe-EEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 179 ~~l~~~~~~~~~v~~g~~v~~i~~~~~g-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
+|+++++|.+++.++++ +.+.. +++ .+++||.||-|.|..|.
T Consensus 125 -----------~i~~~~~V~~i~~~~~~~f~v~~---~~~----~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 125 -----------EIHFNTRVKSIEKKEDGVFGVKT---KNG----GEYEADAVILATGGKSY 167 (409)
T ss_dssp -----------EEE-S--EEEEEEETTEEEEEEE---TTT----EEEEESEEEE----SSS
T ss_pred -----------EEEeCCEeeeeeecCCceeEeec---cCc----ccccCCEEEEecCCCCc
Confidence 99999999999988877 44443 122 37999999999998874
No 74
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.03 E-value=4e-08 Score=109.17 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEec
Q 005056 153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGT 232 (716)
Q Consensus 153 ~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgA 232 (716)
+-..+...|.+.+.+.|+ +++++++|++++.+++++++.+.. ++..+..+++||.||.|
T Consensus 195 ~~~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~~--~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 195 DIHKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQP--SAEHPSRTLEFDGVVVC 253 (410)
T ss_pred CHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEEc--CCCCccceEecCEEEEC
Confidence 334666777888888887 999999999999888887765542 21100136899999999
Q ss_pred CCCChh-hhhhcCC
Q 005056 233 DGAGST-VRKLVGI 245 (716)
Q Consensus 233 DG~~S~-VR~~lgi 245 (716)
.|++|. +.+.++.
T Consensus 254 ~G~~s~~l~~~~~~ 267 (410)
T PRK12409 254 AGVGSRALAAMLGD 267 (410)
T ss_pred CCcChHHHHHHhCC
Confidence 999974 4445554
No 75
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.03 E-value=8.3e-09 Score=113.93 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=53.8
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEE
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VV 230 (716)
.++...+...|.+.+.+.|+ +++++++|++++.+++++.+... ++ +++||.||
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~vV 197 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTLI 197 (393)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEEE
Confidence 45567788888888888887 89999999999887777654432 33 58999999
Q ss_pred ecCCCChh-hhhhcCCC
Q 005056 231 GTDGAGST-VRKLVGID 246 (716)
Q Consensus 231 gADG~~S~-VR~~lgi~ 246 (716)
.|+|.+|. +.+.+|++
T Consensus 198 ~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 198 NCAGLMSDRLAKMAGLE 214 (393)
T ss_pred ECCCcchHHHHHHhCCC
Confidence 99999984 66666654
No 76
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.02 E-value=2.9e-09 Score=116.69 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+++||+|||||++|+++|+.|+++|.+|+||||...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 458999999999999999999999999999999864
No 77
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.01 E-value=8e-09 Score=116.53 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=55.8
Q ss_pred ccChHHHHHHHHHHHHhcC-ceeecccccccccccccccceEEeCcEEEEEEecCCe-EEEEEEeccCCceeeEEEEecE
Q 005056 151 HFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNI 228 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~g-v~v~v~~~~~g~~~~~~i~ad~ 228 (716)
.++...+.+.|.+.+++.| + +|+++++|++++.++++ +++++....+|. ..+|+|++
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv-------------------~i~~~teV~~I~~~~dg~~~v~~~~~~~G~--~~~i~A~~ 237 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNF-------------------ELQLGHEVRDIKRNDDGSWTVTVKDLKTGE--KRTVRAKF 237 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCe-------------------EEEeCCEEEEEEECCCCCEEEEEEEcCCCc--eEEEEcCE
Confidence 5667788999999888876 5 89999999999986665 666654322342 23689999
Q ss_pred EEecCCCC-hhhhhhcCCC
Q 005056 229 LIGTDGAG-STVRKLVGID 246 (716)
Q Consensus 229 VVgADG~~-S~VR~~lgi~ 246 (716)
||.|.|++ +.+++.+|+.
T Consensus 238 VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 238 VFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 98777766 5678888875
No 78
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.01 E-value=4e-09 Score=114.10 Aligned_cols=174 Identities=23% Similarity=0.322 Sum_probs=97.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC---CCCCeeeeCh-------hHHHHHHhhhchHHHH-HhcCCCcc
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS---THPQAHFINN-------RYALVFRKLDGLAEEI-ERSQPPVD 113 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~---~~p~a~~i~~-------rtmeilr~l~Gl~~~l-~~~~~~~~ 113 (716)
||+|||||++|+++|+.|+++|++|+|||++.... ....+..... .-.++....-..+.++ ...+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 79999999999999999999999999999994332 1223332221 1112211110223333 22332322
Q ss_pred ccc-eeEEeecCCCCceeec----------cC----CCcccccc---ccCC--------ccccccChHHHHHHHHHHHHh
Q 005056 114 LWR-KFIYCTSVTGPILGSV----------DH----MQPQDFEK---VVSP--------VSVAHFSQYKLNKLLLKQLEK 167 (716)
Q Consensus 114 ~~~-~~~~~~~~~g~~l~~~----------~~----~~~~~~~~---~~~p--------~~~~~i~q~~Le~~L~~~~~~ 167 (716)
... ....... .......+ .. ........ ...+ .....++-..+.+.|.+.+++
T Consensus 81 ~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~ 159 (358)
T PF01266_consen 81 FRPCGSLYLAE-DEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQR 159 (358)
T ss_dssp EEECEEEEEES-SHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHH
T ss_pred ccccccccccc-chhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHH
Confidence 101 1111110 00000000 00 00000000 0111 112345677888999999999
Q ss_pred cCceeecccccccccccccccceEEeCcEEEEEEecCCeEE-EEEEeccCCceeeEEEEecEEEecCCCChhh-hhhcCC
Q 005056 168 LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTV-RKLVGI 245 (716)
Q Consensus 168 ~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V-R~~lgi 245 (716)
.|+ +++.+++|++++.++++|+ +.+. +| .+++|.||.|.|.+|.- .+.++.
T Consensus 160 ~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 160 AGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp TT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEEEE--GGGHHHHHHTTTT
T ss_pred hhh-------------------hccccccccchhhccccccccccc---cc-----ccccceeEecccccceeeeecccc
Confidence 987 9999999999999999976 5543 44 48999999999998764 455555
Q ss_pred C
Q 005056 246 D 246 (716)
Q Consensus 246 ~ 246 (716)
.
T Consensus 213 ~ 213 (358)
T PF01266_consen 213 D 213 (358)
T ss_dssp S
T ss_pred c
Confidence 3
No 79
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.99 E-value=4.9e-09 Score=114.03 Aligned_cols=181 Identities=13% Similarity=0.196 Sum_probs=102.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCCCCCC---C------eeeeChhHH--HHHHhhh-chHHHHHh
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP---Q------AHFINNRYA--LVFRKLD-GLAEEIER 107 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~~~~p---~------a~~i~~rtm--eilr~l~-Gl~~~l~~ 107 (716)
+.+||+|||||++|+++|..|++++ ++|+|+||...+..+. . |....+.++ ++...-. -..+-..+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999998 9999999998763211 1 111222211 1111100 01111122
Q ss_pred cCCCccccceeEEeecCC------------------------CCceeeccCCCc-cccccccCCccccccChHHHHHHHH
Q 005056 108 SQPPVDLWRKFIYCTSVT------------------------GPILGSVDHMQP-QDFEKVVSPVSVAHFSQYKLNKLLL 162 (716)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~------------------------g~~l~~~~~~~~-~~~~~~~~p~~~~~i~q~~Le~~L~ 162 (716)
.+.+......++..++.. ...+......-. ........|. ...++-..+...|.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~-~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS-GGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC-CceEcHHHHHHHHH
Confidence 222222222222222211 000000000000 0000011121 23455667788888
Q ss_pred HHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh-hhh
Q 005056 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK 241 (716)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-VR~ 241 (716)
+.+...|+ +++++++|+.++..++++++... .+|+ + +++|++||.|-|..|- +-+
T Consensus 161 e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~--~~g~--~-~~~ak~Vin~AGl~Ad~la~ 216 (429)
T COG0579 161 EEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNT--SNGE--E-TLEAKFVINAAGLYADPLAQ 216 (429)
T ss_pred HHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEe--cCCc--E-EEEeeEEEECCchhHHHHHH
Confidence 88888887 99999999999999987544332 3453 2 2999999999999864 567
Q ss_pred hcCCCc
Q 005056 242 LVGIDL 247 (716)
Q Consensus 242 ~lgi~~ 247 (716)
..|++.
T Consensus 217 ~~g~~~ 222 (429)
T COG0579 217 MAGIPE 222 (429)
T ss_pred HhCCCc
Confidence 777665
No 80
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.95 E-value=2.3e-08 Score=112.53 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=51.6
Q ss_pred cccChHHHHHHHHHHHHh----cCceeecccccccccccccccceEEeCcEEEEEEecCC-eEEEEEEeccCCceeeEEE
Q 005056 150 AHFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CINVIASFLKEGKCTERNI 224 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~----~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~-gv~v~v~~~~~g~~~~~~i 224 (716)
..++-..|...|.+.+++ .|.. ++|+++++|++++.+++ .+.++. ++| +|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~-----------------v~i~~~t~V~~I~~~~~~~~~V~T---~~G-----~i 260 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKK-----------------ISINLNTEVLNIERSNDSLYKIHT---NRG-----EI 260 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCC-----------------EEEEeCCEEEEEEecCCCeEEEEE---CCC-----EE
Confidence 345666777888888877 6631 28999999999998744 444432 234 58
Q ss_pred EecEEEecCCCChh-hhhhcCC
Q 005056 225 QCNILIGTDGAGST-VRKLVGI 245 (716)
Q Consensus 225 ~ad~VVgADG~~S~-VR~~lgi 245 (716)
+||+||.|-|++|. +-+.+|+
T Consensus 261 ~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 261 RARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EeCEEEECcChhHHHHHHHhCC
Confidence 99999999999985 5666765
No 81
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.94 E-value=4.8e-09 Score=104.48 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=76.9
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-EEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeecCC
Q 005056 47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVT 125 (716)
Q Consensus 47 lIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~~~ 125 (716)
+||||||+||++|..|.++|++ ++||||++.+. |.+....... ....... +... .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~-~~~~~~~--~~~~-~ 56 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYT-RLHSPSF--FSSD-F 56 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTT-T-BSSSC--CTGG-S
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCC-ccccCcc--cccc-c
Confidence 6999999999999999999999 99999997642 2222111000 0000000 0000 0
Q ss_pred CCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCC
Q 005056 126 GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ 205 (716)
Q Consensus 126 g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~ 205 (716)
+ +..+.......... .+......++..+.+.|.+.+++++. .++++++|++++.+++
T Consensus 57 ~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~~~~ 113 (203)
T PF13738_consen 57 G--LPDFESFSFDDSPE--WRWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRRDGD 113 (203)
T ss_dssp S----CCCHSCHHHHHH--HHHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEEETT
T ss_pred c--CCcccccccccCCC--CCCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEEecc
Confidence 0 00000000000000 00012235677888889998988887 7999999999999999
Q ss_pred eEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 206 CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 206 gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
++++++. ++ .+++|++||.|.|..|.
T Consensus 114 ~w~v~~~---~~----~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 114 GWTVTTR---DG----RTIRADRVVLATGHYSH 139 (203)
T ss_dssp TEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred EEEEEEE---ec----ceeeeeeEEEeeeccCC
Confidence 9887775 44 37889999999998765
No 82
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.93 E-value=4.3e-08 Score=109.99 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=56.3
Q ss_pred cccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcEEEEEEec-CCeEEEEEEeccCCceeeEEEEec
Q 005056 150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQCN 227 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~-~~gv~v~v~~~~~g~~~~~~i~ad 227 (716)
..++...|.+.|.+.+.+. |+ +++++++|++++.+ ++++++++....++. ..+++||
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~--~~~i~Ad 237 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTGE--KREQVAD 237 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCCc--eEEEEcC
Confidence 4677888888888888644 55 99999999999887 667777654222331 2368999
Q ss_pred EEEecCCCCh-hhhhhcCCCc
Q 005056 228 ILIGTDGAGS-TVRKLVGIDL 247 (716)
Q Consensus 228 ~VVgADG~~S-~VR~~lgi~~ 247 (716)
+||-|-|++| .+.+.+|+..
T Consensus 238 ~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 238 YVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred EEEECCCcchHHHHHHcCCCc
Confidence 9988888776 4777888653
No 83
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.92 E-value=2.4e-08 Score=111.89 Aligned_cols=167 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
+...+|+||||||+||++|..|.+.|++++||||++... .....++++-. ..+ ++.... .......+.. .
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G~W~~~~~~~~--d~~-~~~~~~--~~~~s~~Y~~--L 77 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---GLWVYTPKSES--DPL-SLDPTR--SIVHSSVYES--L 77 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---ceeecCCCcCC--Ccc-ccCCCC--cccchhhhhh--h
Confidence 445799999999999999999999999999999998652 11111111100 001 110000 0000000000 0
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.++..-......+.+....+.. .........+...+.+.|.+.++..++. ..|+++++|+++
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~-~~~~~~~fp~~~ev~~YL~~~a~~fgl~-----------------~~I~~~t~V~~V 139 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDD-ESRDSRRYPSHREVLAYLQDFAREFKIE-----------------EMVRFETEVVRV 139 (461)
T ss_pred hccCCHhhccCCCCCCCccccc-ccCcCCCCCCHHHHHHHHHHHHHHcCCc-----------------ceEEecCEEEEE
Confidence 0000000000001110000000 0000011224567888999999888861 149999999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
+..++.+++++.. ++. ...+..+|.||.|.|..+.
T Consensus 140 ~~~~~~w~V~~~~--~~~-~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 140 EPVDGKWRVQSKN--SGG-FSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred eecCCeEEEEEEc--CCC-ceEEEEcCEEEEeccCCCC
Confidence 9888888777652 221 1235679999999998653
No 84
>PRK07233 hypothetical protein; Provisional
Probab=98.91 E-value=5.3e-07 Score=100.76 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=44.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC-----e-------ee---eChhHHHHHHhhhchHHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ-----A-------HF---INNRYALVFRKLDGLAEE 104 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~-----a-------~~---i~~rtmeilr~l~Gl~~~ 104 (716)
+|+|||||++||++|..|+++|++|+|+|+++.+..... + +. -.+...++++++ |+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l-g~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL-GLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc-CCCCc
Confidence 599999999999999999999999999999986632110 1 11 235667888887 76544
No 85
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.91 E-value=1.4e-09 Score=121.23 Aligned_cols=154 Identities=22% Similarity=0.305 Sum_probs=39.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC----CeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p----~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
|||||||||+|+++|+.++|.|.+|+||||.+.+.... ..........+ ....|+.+++.+.......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~------ 72 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGG------ 72 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhcc------
Confidence 79999999999999999999999999999998763211 11222222222 1123677776554322100
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.. .. .. ..+.....++...+..+|.+.+.+.|+ +|++++.++++
T Consensus 73 ------~~---~~--~~------~~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v 116 (428)
T PF12831_consen 73 ------YP---QE--DR------YGWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV 116 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cc---cc--cc------ccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence 00 00 00 000001234455566677777777676 99999999999
Q ss_pred EecCCeEEE-EEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCc
Q 005056 201 SATDQCINV-IASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247 (716)
Q Consensus 201 ~~~~~gv~v-~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~ 247 (716)
..+++.++- ++.. .+| ..+|+|+++|+|+|- ..+-...|.++
T Consensus 117 ~~~~~~i~~V~~~~-~~g---~~~i~A~~~IDaTG~-g~l~~~aG~~~ 159 (428)
T PF12831_consen 117 IRDGGRITGVIVET-KSG---RKEIRAKVFIDATGD-GDLAALAGAPY 159 (428)
T ss_dssp ------------------------------------------------
T ss_pred cccccccccccccc-ccc---ccccccccccccccc-ccccccccccc
Confidence 988765433 3331 223 368999999999995 45555666654
No 86
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.89 E-value=1.9e-07 Score=103.88 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=49.4
Q ss_pred cChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005056 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG 231 (716)
Q Consensus 152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVg 231 (716)
++-..+...|.+.+.+.|+ +|+++++|++++.+++++.. +. .+++ +++||.||.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~~-v~-t~~~-----~~~a~~VV~ 251 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGV-------------------KFRFNTPVDGLLVEGGRITG-VQ-TGGG-----VITADAYVV 251 (416)
T ss_pred CCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEecCCEEEE-EE-eCCc-----EEeCCEEEE
Confidence 3445677778888888887 89999999999987776542 22 1223 588999999
Q ss_pred cCCCChh-hhhhcCCC
Q 005056 232 TDGAGST-VRKLVGID 246 (716)
Q Consensus 232 ADG~~S~-VR~~lgi~ 246 (716)
|.|..|. +-+.+|+.
T Consensus 252 a~G~~~~~l~~~~g~~ 267 (416)
T PRK00711 252 ALGSYSTALLKPLGVD 267 (416)
T ss_pred CCCcchHHHHHHhCCC
Confidence 9999985 33444443
No 87
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.89 E-value=1.8e-07 Score=105.71 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=44.9
Q ss_pred CEEEECCCHHHHHHHHHHHhC------CCCEEEECCCCCCCCCC------------Ceee---eChhHHHHHHhhhchHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP------------QAHF---INNRYALVFRKLDGLAE 103 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~------Gi~v~liEr~~~~~~~p------------~a~~---i~~rtmeilr~l~Gl~~ 103 (716)
+|+|||||++||++|..|++. |++|+|+|+++.+.-+- .++. -.+..+++++++ |+.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l-gl~~ 81 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL-NLEE 81 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc-CCcc
Confidence 599999999999999999986 48999999998653211 1111 235677888888 8865
Q ss_pred HH
Q 005056 104 EI 105 (716)
Q Consensus 104 ~l 105 (716)
.+
T Consensus 82 ~~ 83 (463)
T PRK12416 82 EM 83 (463)
T ss_pred ce
Confidence 54
No 88
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.89 E-value=3.1e-07 Score=102.10 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=108.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCCeeeeChhHHHHHHhhh-c-hHHHH------HhcCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-G-LAEEI------ERSQPP 111 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~-~~p~a~~i~~rtmeilr~l~-G-l~~~l------~~~~~~ 111 (716)
+.++||+|||||+.|+-.|+.++.+|++|+|+||+..-+ ..++.+.+-..+++.|.+.. + +.+.+ .+..+.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 477999999999999999999999999999999998653 23444545555555554320 1 11222 222222
Q ss_pred ccccceeEEeecC--CCCc-----------eeec-------cCCCccc---cccccCC--------ccccccChHHHHHH
Q 005056 112 VDLWRKFIYCTSV--TGPI-----------LGSV-------DHMQPQD---FEKVVSP--------VSVAHFSQYKLNKL 160 (716)
Q Consensus 112 ~~~~~~~~~~~~~--~g~~-----------l~~~-------~~~~~~~---~~~~~~p--------~~~~~i~q~~Le~~ 160 (716)
.-....+.+-... .+.. +..+ ....... ......+ +.-..++-.+|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 1111111111110 0000 0000 0000000 0000000 11234455667667
Q ss_pred HHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh-h
Q 005056 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V 239 (716)
Q Consensus 161 L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-V 239 (716)
+...+.+.|. .++..++|+++..+++-+-|.+.+..+|+ +++|+|+.||-|-|.++- +
T Consensus 170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~~tg~--~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDRETGE--TYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEecCCCc--EEEEEcCEEEECCCccHHHH
Confidence 7777788887 89999999999998884445666555554 689999999999999976 4
Q ss_pred hhhcCCC
Q 005056 240 RKLVGID 246 (716)
Q Consensus 240 R~~lgi~ 246 (716)
++..+..
T Consensus 229 ~~~~~~~ 235 (532)
T COG0578 229 LEMAGLE 235 (532)
T ss_pred HHhhccc
Confidence 6666443
No 89
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.89 E-value=4.8e-08 Score=112.18 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=55.7
Q ss_pred cccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEE-EEEEeccCCceeeEEEEecE
Q 005056 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI 228 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~-v~v~~~~~g~~~~~~i~ad~ 228 (716)
..++-..|...|...+.+.|+ +++++++|+++..++++++ +++.+..+++ ..+|+|++
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~--~~~i~A~~ 202 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTGE--TQEIHAPV 202 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCCc--EEEEECCE
Confidence 356667777778888888887 9999999999988777654 4454333332 35799999
Q ss_pred EEecCCCChh-hhhhcCCC
Q 005056 229 LIGTDGAGST-VRKLVGID 246 (716)
Q Consensus 229 VVgADG~~S~-VR~~lgi~ 246 (716)
||-|.|++|. +.+..++.
T Consensus 203 VVnAaG~wa~~l~~~~g~~ 221 (546)
T PRK11101 203 VVNAAGIWGQHIAEYADLR 221 (546)
T ss_pred EEECCChhHHHHHHhcCCC
Confidence 9999999974 55555543
No 90
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.86 E-value=2.4e-07 Score=97.06 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=44.6
Q ss_pred EEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCch--hH--HHHHHHHHhHHH
Q 005056 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA--SI--LNTYETERKPIA 417 (716)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~--~l--L~sY~~eRrp~a 417 (716)
=.|||=+|..++---=-|..+||..+...|..+-..+++.... .. +.+|+..-+.--
T Consensus 386 G~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~ 446 (621)
T KOG2415|consen 386 GALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSY 446 (621)
T ss_pred ceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhH
Confidence 3689999999998888999999999999999999888776422 22 348886655433
No 91
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.84 E-value=4.1e-07 Score=105.81 Aligned_cols=73 Identities=21% Similarity=0.193 Sum_probs=54.3
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecC--CeEE-EEEEeccCCceeeEEEEec
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQCN 227 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~--~gv~-v~v~~~~~g~~~~~~i~ad 227 (716)
.++-..|...|.+.+.+.|+ +++.+++|+++..++ +.++ +++.+..+++ .++|++|
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~--~~~i~a~ 286 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTGK--EFDVYAK 286 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCCc--EEEEEeC
Confidence 45667788888888888887 999999999998763 4443 3444333342 3579999
Q ss_pred EEEecCCCChh-hhhhcC
Q 005056 228 ILIGTDGAGST-VRKLVG 244 (716)
Q Consensus 228 ~VVgADG~~S~-VR~~lg 244 (716)
+||.|.|++|. +++.++
T Consensus 287 ~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 287 VVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEEECCCHhHHHHHHhcc
Confidence 99999999975 677665
No 92
>PLN02612 phytoene desaturase
Probab=98.83 E-value=3.6e-06 Score=97.08 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=49.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC-------------ee---eeChhHHHHHHhhhchHHH
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ-------------AH---FINNRYALVFRKLDGLAEE 104 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~-------------a~---~i~~rtmeilr~l~Gl~~~ 104 (716)
....+|+|||||++||++|+.|+++|++|+|+|++.......+ .+ ...++.+++|+++ |+.+.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~ 169 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDR 169 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCccc
Confidence 3457899999999999999999999999999999865322111 11 1246789999999 98665
Q ss_pred H
Q 005056 105 I 105 (716)
Q Consensus 105 l 105 (716)
+
T Consensus 170 ~ 170 (567)
T PLN02612 170 L 170 (567)
T ss_pred c
Confidence 4
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.83 E-value=6.5e-08 Score=109.60 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=86.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC-CCCCCCee---eeCh-hHHHHHHhhhchHHHH-HhcCCCccc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQAH---FINN-RYALVFRKLDGLAEEI-ERSQPPVDL 114 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~-~~~~p~a~---~i~~-rtmeilr~l~Gl~~~l-~~~~~~~~~ 114 (716)
+.++||+||||||+|+.+|+.+++.|.+|+|||++.. +...++.- ++.. ...+-++.++|+...+ ...+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq--- 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ--- 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc---
Confidence 4569999999999999999999999999999999852 21112111 1111 1122223332222222 112111
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeC
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
+.......|... ..+ ...+++..+...|.+.+.+.+. +++ +.
T Consensus 79 ---~r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~n------------------V~I-~q 120 (618)
T PRK05192 79 ---FRMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQPN------------------LDL-FQ 120 (618)
T ss_pred ---eeecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCCC------------------cEE-EE
Confidence 000000011000 011 1356778888888888876632 265 46
Q ss_pred cEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 195 ~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
.+|+++..+++.|..... .+|. .|.|+.||.|+|..+
T Consensus 121 ~~V~~Li~e~grV~GV~t--~dG~----~I~Ak~VIlATGTFL 157 (618)
T PRK05192 121 GEVEDLIVENGRVVGVVT--QDGL----EFRAKAVVLTTGTFL 157 (618)
T ss_pred eEEEEEEecCCEEEEEEE--CCCC----EEECCEEEEeeCcch
Confidence 678888777776543222 2453 799999999999765
No 94
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.80 E-value=4.4e-08 Score=115.32 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=32.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..||+|||||++|+++|+.|+++|++|+||||...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 47999999999999999999999999999999853
No 95
>PLN02661 Putative thiazole synthesis
Probab=98.79 E-value=1.1e-07 Score=100.87 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC-CCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~-Gi~v~liEr~~~~ 78 (716)
...++||+|||||++||++|+.|++. |++|+||||...+
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 35568999999999999999999986 9999999998765
No 96
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.78 E-value=4.1e-08 Score=110.93 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+.++||||||||++||++|+.|+++|.+|+||||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999999864
No 97
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.76 E-value=1.4e-06 Score=97.86 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=44.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCCCCCC------------Cee---eeChhHHHHHHhhhchHHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP------------QAH---FINNRYALVFRKLDGLAEE 104 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~~~~p------------~a~---~i~~rtmeilr~l~Gl~~~ 104 (716)
+|+|||||++||++|..|+++| ++|+|+|+++.+.-+- .++ .-.+..+++++++ |+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL-GLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc-CCccc
Confidence 6999999999999999999988 8999999987653211 111 1134577888888 87654
No 98
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=8.6e-08 Score=101.39 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=76.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
+||+||||||+||++|..|++.|++|+|||+.+. .+..... . .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~----------~---~------------------- 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT----------T---E------------------- 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec----------c---c-------------------
Confidence 5899999999999999999999999999998761 1110000 0 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
+..+ |.....+....+...+.+.+++.++ ++++ ++|++++.+
T Consensus 44 -----~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~ 85 (300)
T TIGR01292 44 -----VENY-------------PGFPEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS 85 (300)
T ss_pred -----cccc-------------CCCCCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence 0000 0000012234555667777777776 7878 899999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++.++++.. ++. ++++|+||.|.|...
T Consensus 86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 86 DRPFKVKTG---DGK----EYTAKAVIIATGASA 112 (300)
T ss_pred CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence 777666543 342 689999999999753
No 99
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.73 E-value=2.9e-07 Score=104.88 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=35.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 45789999999999999999999999999999998764
No 100
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.72 E-value=1.1e-07 Score=104.99 Aligned_cols=149 Identities=25% Similarity=0.318 Sum_probs=84.0
Q ss_pred EEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC------CCCeeeeChhHHH-HHHhhhc----hHHHHHhcCCCcccc
Q 005056 47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYAL-VFRKLDG----LAEEIERSQPPVDLW 115 (716)
Q Consensus 47 lIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~------~p~a~~i~~rtme-ilr~l~G----l~~~l~~~~~~~~~~ 115 (716)
+|||||++||++|+.|+++|.+|+|+||++.+.. ..++...+....+ .+...+. +...+..... .+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~-~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSN-KDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCH-HHHH
Confidence 6999999999999999999999999999986532 1222323322221 1121100 1111111100 0000
Q ss_pred ceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 116 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
. ++.. .|-.+.... ... ..| ..-....+...|.+.+++.|+ ++++++
T Consensus 80 ~---~~~~-~Gv~~~~~~------~g~-~~p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~ 126 (400)
T TIGR00275 80 D---FFES-LGLELKVEE------DGR-VFP---CSDSAADVLDALLNELKELGV-------------------EILTNS 126 (400)
T ss_pred H---HHHH-cCCeeEEec------CCE-eEC---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence 0 0000 011111000 000 001 111235677788888888877 899999
Q ss_pred EEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 196 ~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+|++++.+++.+.++. ++. ++.+|.||.|+|..|
T Consensus 127 ~V~~i~~~~~~~~v~~----~~~----~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 127 KVKSIKKDDNGFGVET----SGG----EYEADKVILATGGLS 160 (400)
T ss_pred EEEEEEecCCeEEEEE----CCc----EEEcCEEEECCCCcc
Confidence 9999988776655443 232 589999999999987
No 101
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.68 E-value=2.8e-07 Score=103.88 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=34.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~ 77 (716)
...++||+|||||++||++|+.|+++ |.+|+|+|++..
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 35568999999999999999999998 999999999753
No 102
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.68 E-value=4.8e-07 Score=103.83 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=35.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.++||||||+|++||++|+.+++.|.+|+||||....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45699999999999999999999999999999998754
No 103
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.8e-07 Score=104.27 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=36.8
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~~~ 78 (716)
+.+..+||+|||||++||++|..|.++|++ ++||||+...
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 446779999999999999999999999999 9999999865
No 104
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.66 E-value=6.4e-07 Score=104.06 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=34.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
+.++||||||||++||++|+.+++. |.+|+||||.+..
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 4568999999999999999999998 9999999998753
No 105
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.66 E-value=4.9e-06 Score=93.97 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=46.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCCCCC-----C-------Ceeee---ChhHHHHHHhhhchHHH
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFSTH-----P-------QAHFI---NNRYALVFRKLDGLAEE 104 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~~~~-----p-------~a~~i---~~rtmeilr~l~Gl~~~ 104 (716)
.||+|||||++||++|..|+++ |++|+|+|+++.+.-+ . .++.+ .+..+++++++ |+.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l-gl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL-GLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc-CCCcc
Confidence 5899999999999999999999 9999999999865211 0 11222 34588888888 88654
Q ss_pred H
Q 005056 105 I 105 (716)
Q Consensus 105 l 105 (716)
+
T Consensus 82 ~ 82 (462)
T TIGR00562 82 L 82 (462)
T ss_pred c
Confidence 4
No 106
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.66 E-value=1.9e-07 Score=106.70 Aligned_cols=114 Identities=18% Similarity=0.326 Sum_probs=79.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
...+||+||||||+||++|+.|+++|++++|||+.. .+... ... ++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~------GG~~~--------~~~-~~~------------------ 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF------GGQVL--------DTM-GIE------------------ 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC------CCeee--------ccC-ccc------------------
Confidence 446899999999999999999999999999997531 11100 000 000
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
+..+ + ....-..+...|.+.+++.++ +++++++++++
T Consensus 256 --~~~~-------------~---------~~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I 292 (517)
T PRK15317 256 --NFIS-------------V---------PETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL 292 (517)
T ss_pred --ccCC-------------C---------CCCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence 0000 0 012234567778888888887 89999999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
...++.+++++. ++. +++++.||.|+|+++
T Consensus 293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~ 322 (517)
T PRK15317 293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW 322 (517)
T ss_pred EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence 987777666543 443 689999999999965
No 107
>PRK07121 hypothetical protein; Validated
Probab=98.65 E-value=2.4e-07 Score=105.35 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=35.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..++||||||+|.+||++|+.++++|.+|+||||.+..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45799999999999999999999999999999998764
No 108
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.65 E-value=1.3e-06 Score=89.78 Aligned_cols=48 Identities=33% Similarity=0.295 Sum_probs=40.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeee
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFI 87 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i 87 (716)
+.+..+|+|||||+-|+++|+.|+|+|.+++|+|+.+-+...+..+..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~ 51 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGI 51 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCc
Confidence 345689999999999999999999999999999999987655444433
No 109
>PLN02268 probable polyamine oxidase
Probab=98.64 E-value=6.5e-06 Score=92.25 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.+|+|||||++||++|..|.+.|++|+|+|+++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 37999999999999999999999999999998755
No 110
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.63 E-value=1.2e-06 Score=101.97 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=34.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+|.+||++|+.+++.|.+|+||||....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 5689999999999999999999999999999998654
No 111
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.62 E-value=1.8e-05 Score=89.19 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=46.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-------------Cee---eeChhHHHHHHhhhchHHHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-------------QAH---FINNRYALVFRKLDGLAEEI 105 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p-------------~a~---~i~~rtmeilr~l~Gl~~~l 105 (716)
+|+|||||++||++|+.|+++|++|+|+|+++.+.-+- ..+ ...+..+++|+++ |+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccce
Confidence 58999999999999999999999999999997542210 111 1247889999999 886544
No 112
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.62 E-value=8.8e-07 Score=102.54 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEE-EEEeccCCceeeEEEEecEEEecC
Q 005056 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINV-IASFLKEGKCTERNIQCNILIGTD 233 (716)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v-~v~~~~~g~~~~~~i~ad~VVgAD 233 (716)
..+...|.+.+.+.|+ ++++++.++++..+++.|.- .+....+|+ ...|.|+.||.|+
T Consensus 129 ~~i~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVlAt 187 (566)
T TIGR01812 129 HALLHTLYEQCLKLGV-------------------SFFNEYFALDLIHDDGRVRGVVAYDLKTGE--IVFFRAKAVVLAT 187 (566)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeccEEEEEEEeCCEEEEEEEEECCCCc--EEEEECCeEEECC
Confidence 3567778888877776 99999999999887665542 222222443 3579999999999
Q ss_pred CCChhhhh
Q 005056 234 GAGSTVRK 241 (716)
Q Consensus 234 G~~S~VR~ 241 (716)
|..|.+..
T Consensus 188 GG~~~~~~ 195 (566)
T TIGR01812 188 GGYGRIYK 195 (566)
T ss_pred CcccCCCC
Confidence 99987654
No 113
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.61 E-value=1.2e-06 Score=101.47 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=33.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
+.++||||||||.+||++|+.+++. |.+|+|+||....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 4568999999999999999999987 5899999998643
No 114
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.61 E-value=1.4e-06 Score=97.27 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=32.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 5689999999999999999985 79999999998764
No 115
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.60 E-value=9.2e-07 Score=100.40 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHh-cCceeecccccccccccccccceEEeCcEEEEEEecCCeEE-EEEEeccCCceeeEEEEecEEEe
Q 005056 154 QYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIG 231 (716)
Q Consensus 154 q~~Le~~L~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~-v~v~~~~~g~~~~~~i~ad~VVg 231 (716)
-..+...|.+.+.+ .++ +|+++++++++..+++.|. +.+.. .++ ..+++++.||.
T Consensus 127 G~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~--~~~--~~~i~A~~VVl 183 (488)
T TIGR00551 127 GREVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVWN--RET--VETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEEE--CCc--EEEEEcCEEEE
Confidence 35678888888877 455 9999999999987766554 33332 222 34789999999
Q ss_pred cCCCChhhhh
Q 005056 232 TDGAGSTVRK 241 (716)
Q Consensus 232 ADG~~S~VR~ 241 (716)
|+|+.|.+..
T Consensus 184 AtGG~~~~~~ 193 (488)
T TIGR00551 184 ATGGAGKLYQ 193 (488)
T ss_pred CCCcccCCCC
Confidence 9999997644
No 116
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=2.6e-07 Score=101.89 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=90.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
+...+|+||||||+||++|..|.++|++++++||...+. +........+.-+. -+.+.++... +.+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG----GlW~y~~~~~~~~s--s~Y~~l~tn~-pKe~------ 70 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG----GLWKYTENVEVVHS--SVYKSLRTNL-PKEM------ 70 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc----ceEeecCccccccc--chhhhhhccC-Chhh------
Confidence 445799999999999999999999999999999998763 21111101110000 0111111111 1100
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
....+.+.+.++ +...-+...+...|.+.|+..+. ...|+|+++++.+
T Consensus 71 --------~~~~dfpf~~~~-------~~~~p~~~e~~~YL~~yA~~F~l-----------------~~~i~f~~~v~~v 118 (448)
T KOG1399|consen 71 --------MGYSDFPFPERD-------PRYFPSHREVLEYLRDYAKHFDL-----------------LKMINFNTEVVRV 118 (448)
T ss_pred --------hcCCCCCCcccC-------cccCCCHHHHHHHHHHHHHhcCh-----------------hhheEecccEEEE
Confidence 000111111111 11123455888999999998875 1379999999999
Q ss_pred EecC-CeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 201 ~~~~-~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
+... +.+.|+... +++. ...-.+|.||.|.|-+
T Consensus 119 ~~~~~gkW~V~~~~--~~~~-~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 119 DSIDKGKWRVTTKD--NGTQ-IEEEIFDAVVVCTGHY 152 (448)
T ss_pred eeccCCceeEEEec--CCcc-eeEEEeeEEEEcccCc
Confidence 9888 677777653 2221 2356799999999988
No 117
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.60 E-value=2.6e-07 Score=105.05 Aligned_cols=144 Identities=22% Similarity=0.270 Sum_probs=84.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCC-ccccceeEEee
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCT 122 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~-~~~~~~~~~~~ 122 (716)
-.|+||||||+||++|..|...|++++++||++.. +|++.--...... ...+.....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i--------------------GG~W~~~~~~~~g~~~~y~sl~~-- 59 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI--------------------GGLWRYTENPEDGRSSVYDSLHT-- 59 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS--------------------SGGGCHSTTCCCSEGGGSTT-B---
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC--------------------CccCeeCCcCCCCccccccceEE--
Confidence 47999999999999999999999999999999875 2444211000000 000000000
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
+ ....+. .-.+|. ..+......++..+.+.|.+.++..+.. ..|+|+|+|+++++
T Consensus 60 n-~sk~~~-----~fsdfp--~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~-----------------~~I~fnt~V~~v~~ 114 (531)
T PF00743_consen 60 N-TSKEMM-----AFSDFP--FPEDYPDFPSHSEVLEYLESYAEHFGLR-----------------KHIRFNTEVVSVER 114 (531)
T ss_dssp S-S-GGGS-----CCTTS---HCCCCSSSEBHHHHHHHHHHHHHHTTGG-----------------GGEETSEEEEEEEE
T ss_pred e-eCchHh-----cCCCcC--CCCCCCCCCCHHHHHHHHHHHHhhhCCc-----------------ceEEEccEEeEeee
Confidence 0 001111 011111 0111122456889999999999998761 27999999999988
Q ss_pred cCC-----eEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 203 TDQ-----CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 203 ~~~-----gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
.++ .++|+. ..+|+ ..+-.+|.||.|.|.++.
T Consensus 115 ~~d~~~~~~W~V~~--~~~g~--~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 115 DPDFSATGKWEVTT--ENDGK--EETEEFDAVVVATGHFSK 151 (531)
T ss_dssp ETTTT-ETEEEEEE--TTTTE--EEEEEECEEEEEE-SSSC
T ss_pred ccccCCCceEEEEe--ecCCe--EEEEEeCeEEEcCCCcCC
Confidence 653 455544 34453 345568999999999874
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.6e-06 Score=100.06 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.+.++||||||+|.+||++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 346699999999999999999999999999999998643
No 119
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.59 E-value=8.9e-07 Score=96.73 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=32.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+||+|||||++|+++|+.|+++|.+|+|+||...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999864
No 120
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.59 E-value=2.7e-07 Score=103.47 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=32.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~ 78 (716)
||||||||++||++|+.++++| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 7999999999999999999999 999999998764
No 121
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1.9e-06 Score=100.54 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.++||||||||.+||++|+.+++.|.+|+||||...+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35689999999999999999999999999999986543
No 122
>PLN02676 polyamine oxidase
Probab=98.58 E-value=5.1e-06 Score=94.06 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~~ 78 (716)
..+||+|||||++||++|..|+++|+ +|+|+|++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 45799999999999999999999998 69999998764
No 123
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.57 E-value=4.1e-07 Score=103.91 Aligned_cols=114 Identities=18% Similarity=0.334 Sum_probs=78.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (716)
...+||+||||||+||++|+.|++.|++|+|||.+.. +... ... ++ ..+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~--------------~~~-- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG------GQVK--------DTV-GI--------------ENL-- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Cccc--------cCc-Cc--------------ccc--
Confidence 4458999999999999999999999999999974311 1000 000 10 000
Q ss_pred eecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEE
Q 005056 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (716)
Q Consensus 121 ~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i 200 (716)
.+ .+ ......+...|.+.+++.++ +++.+++|+++
T Consensus 259 ----~~------------------~~----~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I 293 (515)
T TIGR03140 259 ----IS------------------VP----YTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI 293 (515)
T ss_pred ----cc------------------cC----CCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence 00 00 11244566777787877776 89999999999
Q ss_pred EecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 201 ~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+.+++.+.+++. +|. ++++|+||.|.|++.
T Consensus 294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW 323 (515)
T ss_pred EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence 887776666553 443 689999999999863
No 124
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.57 E-value=2.6e-06 Score=94.81 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEe-ccCCceeeEEEEecEEEe
Q 005056 153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF-LKEGKCTERNIQCNILIG 231 (716)
Q Consensus 153 ~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~-~~~g~~~~~~i~ad~VVg 231 (716)
.-..+...|.+.+++.|+ +|+++++++++..+++.|+-.+.. ..+|+ ..+|+|+-||-
T Consensus 139 ~g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~--~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADGE--FVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTCE--EEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCCe--EEEEeeeEEEe
Confidence 446788889999999987 999999999999988776543332 23443 56899999999
Q ss_pred cCCCChh
Q 005056 232 TDGAGST 238 (716)
Q Consensus 232 ADG~~S~ 238 (716)
|.|..+.
T Consensus 198 AtGG~~~ 204 (417)
T PF00890_consen 198 ATGGFGG 204 (417)
T ss_dssp ----BGG
T ss_pred ccCcccc
Confidence 9999985
No 125
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.57 E-value=4.4e-05 Score=84.10 Aligned_cols=63 Identities=21% Similarity=0.430 Sum_probs=50.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCCCC--------------CCCeeeeC-hhHHHHHHhhhchHHHHHh
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST--------------HPQAHFIN-NRYALVFRKLDGLAEEIER 107 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~~~--------------~p~a~~i~-~rtmeilr~l~Gl~~~l~~ 107 (716)
.|+|||||++||++|+.|+|++ ++++|+|+.+...- .+...... +..++.++++ |+.+.+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~~ 80 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLLW 80 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhcc
Confidence 6899999999999999999999 99999999865532 12333334 6788899999 99999873
Q ss_pred c
Q 005056 108 S 108 (716)
Q Consensus 108 ~ 108 (716)
.
T Consensus 81 ~ 81 (444)
T COG1232 81 N 81 (444)
T ss_pred C
Confidence 3
No 126
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=9.9e-07 Score=101.62 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=45.7
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCCeeeeChhHHHHHHhhhchHHH
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEE 104 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~--~p~a~~i~~rtmeilr~l~Gl~~~ 104 (716)
|.+.++||+|||+|++|+++|+.++++|.+|+||||.+.... ...+..+.....++++++ |+.+.
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~-g~~~~ 69 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRA-GVPDT 69 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHC-CCHHH
Confidence 345579999999999999999999999999999999875421 111112222234666666 66543
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.6e-06 Score=100.41 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
.++||||||||++||++|+.+++. |.+|+||||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 568999999999999999999987 4899999998653
No 128
>PLN02576 protoporphyrinogen oxidase
Probab=98.54 E-value=3.3e-05 Score=88.14 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~-Gi~v~liEr~~~~ 78 (716)
....||+|||||++||++|+.|++. |++|+|+|+++.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3457999999999999999999999 9999999999865
No 129
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.7e-07 Score=94.86 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=31.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
+.+||+||||||+||++|++++|.|++ ++|+|+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 568999999999999999999999999 77777653
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.53 E-value=2.8e-06 Score=98.89 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=34.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||||.+||++|+.+++.|.+|+||||....
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 4689999999999999999999999999999998654
No 131
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=2.1e-06 Score=99.52 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.9
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC---CCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~G---i~v~liEr~~~~ 78 (716)
|+..++||||||||++||++|+.+++.| .+|+||||....
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 3456799999999999999999999998 999999998754
No 132
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.52 E-value=2.3e-06 Score=98.21 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
++.+.++||||||+|++||++|+.+++. .+|+||||....
T Consensus 3 ~~~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 3 TSPEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred CCccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 3446679999999999999999999987 899999998753
No 133
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=3.5e-06 Score=97.71 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=35.0
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+.+.++||||||||.+||++|+.+++.|.+|+||||...
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 335678999999999999999999999999999999753
No 134
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.50 E-value=1.5e-05 Score=87.71 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=35.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
++++||+|||||++|+++|+.|+++|.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 45689999999999999999999999999999998754
No 135
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=4e-06 Score=97.37 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=34.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..++||||||||++||++|+.+++.|.+|+||||...
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 3568999999999999999999999999999999864
No 136
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.49 E-value=4e-06 Score=96.88 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=33.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
.++||||||||++||++|+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 458999999999999999999987 6899999998654
No 137
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.49 E-value=2.4e-06 Score=92.16 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=82.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEE-CCCCCCCCCCCeeeeChh----HHHHHHhhhchHHHH-HhcCCCcccccee
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNR----YALVFRKLDGLAEEI-ERSQPPVDLWRKF 118 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~li-Er~~~~~~~p~a~~i~~r----tmeilr~l~Gl~~~l-~~~~~~~~~~~~~ 118 (716)
||+|||||.+|+.+|+.++|.|.+|+|| ++.......++...+..- ..+-++.++|+.-.+ ...+. ++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i------~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGI------HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEE------EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhh------hh
Confidence 7999999999999999999999999999 555545444443332211 112223332221111 11111 11
Q ss_pred EEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEE
Q 005056 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (716)
Q Consensus 119 ~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~ 198 (716)
.......|... -.....+++..+.+.+.+.+.+.+. ++|. ..+|+
T Consensus 75 ~~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~n------------------l~i~-~~~V~ 119 (392)
T PF01134_consen 75 RMLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHPN------------------LTII-QGEVT 119 (392)
T ss_dssp EEESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTSTT------------------EEEE-ES-EE
T ss_pred hcccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCCC------------------eEEE-Ecccc
Confidence 11111111100 0012367899999999999988654 4664 67899
Q ss_pred EEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCC
Q 005056 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (716)
Q Consensus 199 ~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~ 235 (716)
++..+++.|.-... .+|. .+.+|.||.|+|.
T Consensus 120 ~l~~e~~~v~GV~~--~~g~----~~~a~~vVlaTGt 150 (392)
T PF01134_consen 120 DLIVENGKVKGVVT--KDGE----EIEADAVVLATGT 150 (392)
T ss_dssp EEEECTTEEEEEEE--TTSE----EEEECEEEE-TTT
T ss_pred eEEecCCeEEEEEe--CCCC----EEecCEEEEeccc
Confidence 99988887755433 3453 7999999999998
No 138
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=5.5e-06 Score=96.00 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4579999999999999999999999999999998754
No 139
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=5.8e-06 Score=95.85 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=33.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..++||||||||++||++|+.+++. .+|+|+||....
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~ 39 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT 39 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 4568999999999999999999986 999999998643
No 140
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.45 E-value=7.6e-07 Score=96.86 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------CCeeeeChhHHHHHHhhhchHH-HHHhcCCCccc
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL 114 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~--------p~a~~i~~rtmeilr~l~Gl~~-~l~~~~~~~~~ 114 (716)
.||+|||||++|+.+|+.|+++|++|+|||+++..... .+....+.++..++... |+++ +++..+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~-- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI-- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence 59999999999999999999999999999988765321 12334556667777777 7765 444433210
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeC
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g 194 (716)
+. ..... . ..+.....++|..+.+.|.+.+++.+. ++++ .
T Consensus 80 -----~~---aad~~---------~----vPA~gaLvvdR~~~~~~L~~~L~~~pn------------------I~l~-~ 119 (436)
T PRK05335 80 -----ME---AADAH---------R----VPAGGALAVDREGFSEYVTEALENHPL------------------ITVI-R 119 (436)
T ss_pred -----ee---ccccc---------C----CCCccceecCHHHHHHHHHHHHHcCCC------------------cEEE-c
Confidence 00 00000 0 111123467899999999999987643 4666 5
Q ss_pred cEEEEEE
Q 005056 195 HECVSVS 201 (716)
Q Consensus 195 ~~v~~i~ 201 (716)
.+|+++.
T Consensus 120 ~eV~~l~ 126 (436)
T PRK05335 120 EEVTEIP 126 (436)
T ss_pred cchhccc
Confidence 5777775
No 141
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=5.8e-06 Score=95.13 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=33.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+.++||||||||.+||++|+.+ +.|.+|+||||.+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 4568999999999999999999 99999999999764
No 142
>PRK08275 putative oxidoreductase; Provisional
Probab=98.44 E-value=5.5e-06 Score=95.50 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
..++||||||||.+||++|+.+++. |.+|+||||.+..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 3568999999999999999999987 7899999999753
No 143
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=6.1e-06 Score=96.25 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=35.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.+.++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 345689999999999999999999999999999998643
No 144
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.43 E-value=2.7e-05 Score=91.68 Aligned_cols=38 Identities=37% Similarity=0.451 Sum_probs=34.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
....+|+|||||++||++|+.|++.|++|+|+|++..+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 34579999999999999999999999999999998755
No 145
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.43 E-value=1.8e-05 Score=81.33 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=34.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST 80 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~~~ 80 (716)
.+.||+|||||-+|++.|..|.++ |++|+|+||+.....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 468999999999999999999754 799999999986543
No 146
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.42 E-value=1.7e-06 Score=99.68 Aligned_cols=34 Identities=26% Similarity=0.602 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.+||+||||||+||++|+.|+++|++|+||||..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4899999999999999999999999999999853
No 147
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.42 E-value=7.4e-06 Score=88.65 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=58.1
Q ss_pred ccChHHHHHHHHHHHHhc-CceeecccccccccccccccceEEeCcEEEEEEecCCe-EEEEEEeccCCceeeEEEEecE
Q 005056 151 HFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNI 228 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~g-v~v~v~~~~~g~~~~~~i~ad~ 228 (716)
.++-..|.+.|.+.+.+. ++ +++++++|+++++.+++ +.+++.+..+++ ..+|+|+|
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~--~~~v~a~F 235 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTGE--KREVRAKF 235 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCCC--eEEEECCE
Confidence 345566777788887776 44 99999999999998887 888887665554 46899999
Q ss_pred EEecCCCChh-hhhhcCCC
Q 005056 229 LIGTDGAGST-VRKLVGID 246 (716)
Q Consensus 229 VVgADG~~S~-VR~~lgi~ 246 (716)
|+..-|++|- +-++.||+
T Consensus 236 VfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 236 VFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred EEECCchHhHHHHHHcCCh
Confidence 9988888875 45666764
No 148
>PRK06370 mercuric reductase; Validated
Probab=98.39 E-value=1.1e-05 Score=91.17 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.++||+||||||+|+++|+.|+++|.+|+||||..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4566999999999999999999999999999999864
No 149
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.39 E-value=7.1e-06 Score=96.01 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=36.2
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
|...++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3456799999999999999999999999999999998754
No 150
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.38 E-value=6.9e-06 Score=92.70 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.||||||||++||++|+.+++.|.+|+||||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 151
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.37 E-value=8.3e-06 Score=92.97 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=32.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+|.+||++|+.+++ |.+|+||||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 36899999999999999999976 9999999998754
No 152
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=1.4e-05 Score=92.47 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=34.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+|.+||++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4689999999999999999999999999999998543
No 153
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.35 E-value=4.7e-06 Score=96.57 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=35.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 355799999999999999999999999999999998643
No 154
>PLN02815 L-aspartate oxidase
Probab=98.34 E-value=1.3e-05 Score=92.59 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=34.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.++||||||+|.+||++|+.+++.| +|+||||.+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 56689999999999999999999999 99999998754
No 155
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.33 E-value=2.8e-06 Score=84.92 Aligned_cols=52 Identities=31% Similarity=0.501 Sum_probs=41.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC------------CCCeeeeChhHHHHHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------------HPQAHFINNRYALVFR 96 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~------------~p~a~~i~~rtmeilr 96 (716)
+|+|||+||+||++|..|+..|++|+||||...... ...+.++.++.-.+++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~ 66 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLR 66 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHH
Confidence 699999999999999999999999999999976522 1234567776644444
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.33 E-value=7.1e-06 Score=68.69 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.|+|||||++|+-+|..|++.|.+|+||++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999999865
No 157
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.32 E-value=4.6e-06 Score=89.88 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=35.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+..+||+|||||.+||++|..|.|.|++|+|+|.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 56689999999999999999999999999999988765
No 158
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.31 E-value=2.7e-06 Score=97.11 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||||||+| +||++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 47899999999 9999999999999999999998753
No 159
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.30 E-value=4.3e-06 Score=96.87 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..++||||||+|++||++|+.++++|.+|+||||....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45799999999999999999999999999999998754
No 160
>PLN02568 polyamine oxidase
Probab=98.29 E-value=8.9e-06 Score=92.95 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=35.5
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC-----CCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~G-----i~v~liEr~~~~ 78 (716)
|+++..+|+|||||++||++|..|+++| ++|+|+|++..+
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3455689999999999999999999988 999999998865
No 161
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.29 E-value=4e-06 Score=83.08 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
||+||||||+|+++|..|++.|++++|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999987764
No 162
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.27 E-value=1.2e-05 Score=91.29 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=82.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCC---eeeeChh-HHHHHHhhhchHHHH-HhcCCCccccce
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQ---AHFINNR-YALVFRKLDGLAEEI-ERSQPPVDLWRK 117 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~-~~p~---a~~i~~r-tmeilr~l~Gl~~~l-~~~~~~~~~~~~ 117 (716)
+||+|||||++|+.+|..|++.|.+|+|||++.... ..++ -.++... ..+-++.++|+...+ ...+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~----- 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQF----- 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeh-----
Confidence 589999999999999999999999999999975321 1111 1111111 112223332222111 1111100
Q ss_pred eEEeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEE
Q 005056 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (716)
Q Consensus 118 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v 197 (716)
.......|... ..+ ...+++..+...|.+.+.+.+. ++++. .++
T Consensus 76 -r~ln~skgpAV--------------~~~--RaQVDr~~y~~~L~e~Le~~pg------------------V~Ile-~~V 119 (617)
T TIGR00136 76 -RVLNSSKGPAV--------------RAT--RAQIDKVLYRKAMRNALENQPN------------------LSLFQ-GEV 119 (617)
T ss_pred -eecccCCCCcc--------------ccc--HHhCCHHHHHHHHHHHHHcCCC------------------cEEEE-eEE
Confidence 00000000000 011 2367788888888888887743 36654 467
Q ss_pred EEEEec-CCeEE-EEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 198 VSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 198 ~~i~~~-~~gv~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+++..+ ++.+. |.+ .+|. .++|+.||.|.|..+
T Consensus 120 v~li~e~~g~V~GV~t---~~G~----~I~Ad~VILATGtfL 154 (617)
T TIGR00136 120 EDLILEDNDEIKGVVT---QDGL----KFRAKAVIITTGTFL 154 (617)
T ss_pred EEEEEecCCcEEEEEE---CCCC----EEECCEEEEccCccc
Confidence 777654 44432 222 2443 689999999999985
No 163
>PLN02487 zeta-carotene desaturase
Probab=98.26 E-value=0.00029 Score=80.84 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=49.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------CC-----eee---eChhHHHHHHhhhchHHHHH
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQ-----AHF---INNRYALVFRKLDGLAEEIE 106 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~--------p~-----a~~---i~~rtmeilr~l~Gl~~~l~ 106 (716)
..+|+|||||++||++|+.|+++|++|+|+|+.+..... +. .+. ..+..+++++++ |+.+++.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCccccc
Confidence 359999999999999999999999999999998866321 10 111 246789999999 9987654
No 164
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.26 E-value=1.5e-05 Score=90.03 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=35.5
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
|.+.++||+||||||+|+++|+.|+++|.+|+||||+...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 3456699999999999999999999999999999997543
No 165
>PRK10262 thioredoxin reductase; Provisional
Probab=98.26 E-value=1.6e-05 Score=85.20 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=32.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
+...||+||||||+||++|..|+++|.+++|||+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45689999999999999999999999999999954
No 166
>PLN02529 lysine-specific histone demethylase 1
Probab=98.26 E-value=0.00014 Score=85.20 Aligned_cols=38 Identities=37% Similarity=0.438 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
....+|+||||||+||++|..|+++|++|+|+|++...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 34579999999999999999999999999999998753
No 167
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.26 E-value=3.7e-08 Score=103.41 Aligned_cols=185 Identities=36% Similarity=0.433 Sum_probs=115.1
Q ss_pred ceechhhhccceecCCeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhHHHHHHHHH
Q 005056 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (716)
Q Consensus 344 w~~~~~~a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~ 423 (716)
|..+..+|..+-. --+.+-|+|+|.|.|+|+.+++...++..+|+|+.+.. ..+.|.+|..|| +++.-|...
T Consensus 232 y~~havVAtl~l~--~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~-----~a~~L~~lp~e~-fv~~lNsaf 303 (481)
T KOG3855|consen 232 YDQHAVVATLKLE--EEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPE-----NASILKSLPEER-FVDLLNSAF 303 (481)
T ss_pred ccceeeeEEEEec--ccccccchhHHhcCCCCceeecccccccccceeecCHH-----HHHHHhcCCchh-HHHHHHHHH
Confidence 6667778777763 23888999999999999999999999999999998742 357899999999 888888887
Q ss_pred HHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHhhHhhhhhhhhhhhcccCCCccchHHHHHHHHHH
Q 005056 424 SVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIF 503 (716)
Q Consensus 424 s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~ 503 (716)
+.++.+..+.. ++..+. -++++..+.+.++.++.+.. .....++
T Consensus 304 ~~q~~~~~~~~------~~~~al----------------------------~~~~~~~~sl~~~~k~~~~~--q~pp~V~ 347 (481)
T KOG3855|consen 304 SSQNPRAAYSD------DADFAL----------------------------NGRAQLSESLLNTSKRLANQ--QYPPSVF 347 (481)
T ss_pred hccCCCchhhh------chhhhh----------------------------cchhhccHHHHhccCccccc--ccCCeEE
Confidence 77665433211 000000 01222222233333322211 1111222
Q ss_pred HcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeeecccCCCCcceeeeeCCC
Q 005056 504 EEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTVRNREIISTLDLVS 582 (716)
Q Consensus 504 ~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~~~~~st~Dl~~ 582 (716)
+-.+.....|| ||++|.+ ..|.+..+ .--|....|.|-+-+|.++||-.++...........+++||..
T Consensus 348 ~v~dksRa~FP---Lgf~ha~-~yV~~~~A------l~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 348 EVGDKSRAQFP---LGFGHAD-EYVTDRVA------LIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred Eecccceeecc---cccccHH-HhcCCchh------hhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 23344455677 9999987 45443211 1112234599999999999999886422111224568888854
No 168
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.6e-05 Score=91.38 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
-.+.++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~ 43 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK 43 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence 3456799999999999999999997 49999999998754
No 169
>PRK09897 hypothetical protein; Provisional
Probab=98.23 E-value=6.7e-06 Score=93.30 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~ 78 (716)
.+|+||||||+|+++|..|.+++ ++|+|||++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 37999999999999999998874 689999997654
No 170
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.23 E-value=8.3e-06 Score=93.98 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=34.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.++||+|||+|++||++|+.|++.|.+|+||||.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998653
No 171
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=1.2e-06 Score=70.76 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred EECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 48 IVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
|||||++||++|+.|++.|++|+|+||++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998764
No 172
>PLN03000 amine oxidase
Probab=98.22 E-value=0.00015 Score=85.60 Aligned_cols=37 Identities=41% Similarity=0.539 Sum_probs=34.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+|||||++||++|..|++.|++|+|+|++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4589999999999999999999999999999998755
No 173
>PRK06116 glutathione reductase; Validated
Probab=98.21 E-value=2.3e-05 Score=88.21 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=32.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 174
>PRK14694 putative mercuric reductase; Provisional
Probab=98.20 E-value=2.9e-05 Score=87.79 Aligned_cols=38 Identities=13% Similarity=0.404 Sum_probs=34.5
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
|+..++||+||||||+|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 34567999999999999999999999999999999864
No 175
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.19 E-value=1.3e-05 Score=87.04 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=55.5
Q ss_pred eeccCcceeeeccCCCCCcccccccccccCCccC----------CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 5 AFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIV----------SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
+++.+.-.+..+..++.|+...+.+...+++... ....++||||||||-+|.-+|+--+-+|+++.|+|+
T Consensus 19 a~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~PsRe~~l~~l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~ 98 (680)
T KOG0042|consen 19 ASGGAVFLTDESDRPNGPHADRLATPEGPSKASLPSREDLLEALKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEA 98 (680)
T ss_pred HhhheeeeecccccCCccccchhhcCCCCCCCCCCCHHHHHHHhhcCCcccEEEECCCccCcceeehhhcccceeEEEec
Confidence 4555566666666667666665555555544222 235569999999999999999999999999999999
Q ss_pred CCCCC
Q 005056 75 NKAFS 79 (716)
Q Consensus 75 ~~~~~ 79 (716)
...-+
T Consensus 99 ~DF~S 103 (680)
T KOG0042|consen 99 GDFAS 103 (680)
T ss_pred ccccC
Confidence 98653
No 176
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=2.5e-05 Score=88.35 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+.++||+||||||+|+++|..|+++|.+|+||||.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345999999999999999999999999999999875
No 177
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.18 E-value=1.2e-05 Score=90.36 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
++||+||||||+|+++|+.++++|.+|+|+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 178
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.17 E-value=3.5e-05 Score=89.55 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=30.5
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
|||||+|++||++|+.+++.|.+|+||||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 179
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.16 E-value=2.7e-05 Score=88.90 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+-+.++||||||+|.+||++|+.++ |.+|+||||.+.
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3466799999999999999999997 679999999875
No 180
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.7e-05 Score=87.90 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=32.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.++||+||||||+|+++|..|+++|.+|+||||.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45899999999999999999999999999999875
No 181
>PRK12839 hypothetical protein; Provisional
Probab=98.16 E-value=1e-05 Score=93.27 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=36.0
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+++.++||+|||+|++||++|+.|++.|.+|+||||....
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3456799999999999999999999999999999998653
No 182
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.15 E-value=3.2e-05 Score=87.61 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=32.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999985
No 183
>PLN02507 glutathione reductase
Probab=98.14 E-value=2.4e-05 Score=89.06 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
+.++||+||||||+|+++|..++++|.+|+||||.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45689999999999999999999999999999974
No 184
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.13 E-value=2.5e-05 Score=87.84 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=31.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999985
No 185
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.13 E-value=5.2e-05 Score=87.42 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..++||||||+|.+||++|+.+++.|.+|+||||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357999999999999999999999999999999998
No 186
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.11 E-value=3.2e-05 Score=86.75 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+++||+||||||+|+++|+.|+++|.+|+||||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 369999999999999999999999999999999863
No 187
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.10 E-value=0.0001 Score=77.14 Aligned_cols=58 Identities=17% Similarity=0.408 Sum_probs=46.1
Q ss_pred ceEEeCcEEEEEEecCC-eEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCccc
Q 005056 189 REILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG 249 (716)
Q Consensus 189 ~~v~~g~~v~~i~~~~~-gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g 249 (716)
.++..+++|++.+.+.+ .|+++++...+++ .++++||.+..|-|.+ |.-+-||++..|
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k--~~tle~DvlLVsiGRr-P~t~GLgle~iG 325 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTGK--KETLECDVLLVSIGRR-PFTEGLGLEKIG 325 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCCc--eeEEEeeEEEEEccCc-ccccCCChhhcc
Confidence 39999999999999888 7888888776665 5799999999999966 555666655433
No 188
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.09 E-value=6.1e-05 Score=87.27 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=35.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..++||||||+|++||++|+.++++|.+|+||||.+..
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45699999999999999999999999999999999754
No 189
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.09 E-value=0.00013 Score=80.66 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=32.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
++||+|||+|++|+++|+.|+++|.+|+|||+...
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~~ 36 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQG 36 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 48999999999999999999999999999998753
No 190
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=4.9e-05 Score=86.11 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=31.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
.++||+||||||+|+++|+.|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 191
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.06 E-value=3.3e-05 Score=89.47 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=34.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 44689999999999999999999999999999998654
No 192
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=5.2e-05 Score=85.64 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+++||+||||||+|+++|+.++++|.+|+|||++.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 35899999999999999999999999999999754
No 193
>PTZ00058 glutathione reductase; Provisional
Probab=98.06 E-value=2.2e-05 Score=90.06 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=34.1
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
+...++||+||||||+|+++|+.+++.|.+|+||||.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 4456799999999999999999999999999999986
No 194
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.04 E-value=0.00013 Score=82.86 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=34.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
+||+|||+||+|+++|..|++.|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998875
No 195
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=5.2e-05 Score=87.34 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..++||||||+| +|+++|+..++.|.+|+||||.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457999999999 8999999999999999999998654
No 196
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.03 E-value=3.1e-05 Score=83.46 Aligned_cols=150 Identities=21% Similarity=0.325 Sum_probs=78.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCCCCCCeeeeChhHH--HHHHhhhchHHHHHhcCCCccccceeE
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI 119 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~~~p~a~~i~~rtm--eilr~l~Gl~~~l~~~~~~~~~~~~~~ 119 (716)
.+|+|+||.||++|++|++|...+ ++++.|||++...-||.... ..-.| ..|+.| .....|...+...-
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll-~~~~~q~~fl~Dl-------vt~~~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLL-PGARMQVSFLKDL-------VTLRDPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSS-------STTT-TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCC-CCCcccccccccc-------CcCcCCCCcccHHH
Confidence 379999999999999999999886 99999999998877764321 11111 011111 00001110000000
Q ss_pred EeecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEE
Q 005056 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (716)
Q Consensus 120 ~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~ 199 (716)
|. ...|+.. .|.. ......+|.++...|.-.+.+.+. .++|+++|++
T Consensus 74 YL-~~~~rl~---------~f~~----~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~ 120 (341)
T PF13434_consen 74 YL-HEHGRLY---------EFYN----RGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS 120 (341)
T ss_dssp HH-HHTT-HH---------HHHH----H--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred HH-HHcCChh---------hhhh----cCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence 00 0011110 0000 012345688888888887777654 6999999999
Q ss_pred EEecCCe----EEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 200 VSATDQC----INVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 200 i~~~~~g----v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
|+...+. ++|++.+ .+|+ ..++.|+-||-|-|..
T Consensus 121 I~~~~~~~~~~~~V~~~~-~~g~--~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 121 IEPDDDGDEDLFRVTTRD-SDGD--GETYRARNVVLATGGQ 158 (341)
T ss_dssp EEEEEETTEEEEEEEEEE-TTS---EEEEEESEEEE----E
T ss_pred EEEecCCCccEEEEEEee-cCCC--eeEEEeCeEEECcCCC
Confidence 9876653 6777654 3343 4689999999999943
No 197
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.02 E-value=3.5e-05 Score=86.23 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecC-CeEEEEEEeccCCceeeEEEEecEEEecC
Q 005056 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTD 233 (716)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~-~gv~v~v~~~~~g~~~~~~i~ad~VVgAD 233 (716)
..+...|.+.+++.|+ +|+++++++++.+++ ++..+.+... ++ ..+++++.||.|.
T Consensus 123 ~~l~~~L~~~a~~~Gv-------------------~i~~~~~v~~l~~~~~~g~v~gv~~~-~~---~~~i~ak~VIlAt 179 (432)
T TIGR02485 123 KALTNALYSSAERLGV-------------------EIRYGIAVDRIPPEAFDGAHDGPLTT-VG---THRITTQALVLAA 179 (432)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEecCCCCeEEEEEEc-CC---cEEEEcCEEEEcC
Confidence 4577788888888887 999999999998763 3322222211 22 1478999999999
Q ss_pred CCChhhhh
Q 005056 234 GAGSTVRK 241 (716)
Q Consensus 234 G~~S~VR~ 241 (716)
|..+..++
T Consensus 180 GG~~~n~~ 187 (432)
T TIGR02485 180 GGLGANRD 187 (432)
T ss_pred CCcccCHH
Confidence 98766443
No 198
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.01 E-value=0.00017 Score=81.56 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=33.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~ 78 (716)
.+.+|+|||||++||++|..|++. |.+|+|+|+++.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 357899999999999999999995 7899999999865
No 199
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.95 E-value=4.6e-05 Score=88.18 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHH----hCCCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~La----r~Gi~v~liEr~~~~ 78 (716)
||||||||.+||++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999998643
No 200
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=8.2e-06 Score=92.49 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=34.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.+||+|||||+.||++|+.|+|+|++|+|+||+..+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 4589999999999999999999999999999999866
No 201
>PRK13748 putative mercuric reductase; Provisional
Probab=97.92 E-value=0.00017 Score=83.57 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.91 E-value=8.8e-05 Score=83.79 Aligned_cols=31 Identities=39% Similarity=0.734 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
+||+||||||+|+++|..|+++|.+|+|||+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 8999999999999999999999999999998
No 203
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.91 E-value=4e-05 Score=87.19 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=31.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 204
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.91 E-value=0.00014 Score=79.85 Aligned_cols=98 Identities=19% Similarity=0.376 Sum_probs=72.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------~~------------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------LM------------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------------hC-------------------------
Confidence 47999999999999999999999999999987643100 00
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
...+...+.+.+++.|+ ++++++++++++.+
T Consensus 182 ------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 212 (377)
T PRK04965 182 ------------------------------PPEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEKT 212 (377)
T ss_pred ------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEcc
Confidence 00122335555666676 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++++.+++. +|+ ++.+|+||.|.|..+
T Consensus 213 ~~~~~v~~~---~g~----~i~~D~vI~a~G~~p 239 (377)
T PRK04965 213 DSGIRATLD---SGR----SIEVDAVIAAAGLRP 239 (377)
T ss_pred CCEEEEEEc---CCc----EEECCEEEECcCCCc
Confidence 776655543 453 689999999999865
No 205
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.88 E-value=5.2e-05 Score=94.47 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.+.++||||||+|.+||++|+..+..|.+|+|+||.+..
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 356799999999999999999999999999999998754
No 206
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00027 Score=78.88 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=96.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCCCC---CCCCCeee----eChhHHHHHHhh-hchHHHHHh-cC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF---STHPQAHF----INNRYALVFRKL-DGLAEEIER-SQ 109 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~~~---~~~p~a~~----i~~rtmeilr~l-~Gl~~~l~~-~~ 109 (716)
-....||+|||||.+|..+|+.|+|.|.+ .+++||.... .-++.+.. .++-.+|++..- .-+..++++ .+
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtg 115 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETG 115 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcC
Confidence 34558999999999999999999999999 4455554332 22333321 122233333211 012323322 33
Q ss_pred CCccccc-eeEEeecCC----------------CCceee---------ccCCCccc-cccccCCccccccChHHHHHHHH
Q 005056 110 PPVDLWR-KFIYCTSVT----------------GPILGS---------VDHMQPQD-FEKVVSPVSVAHFSQYKLNKLLL 162 (716)
Q Consensus 110 ~~~~~~~-~~~~~~~~~----------------g~~l~~---------~~~~~~~~-~~~~~~p~~~~~i~q~~Le~~L~ 162 (716)
.+..... ...+..+.. |.+..- .+.....+ +....+|.. ..++-..+...|.
T Consensus 116 l~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~D-G~~DP~~lC~ala 194 (856)
T KOG2844|consen 116 LHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGD-GVMDPAGLCQALA 194 (856)
T ss_pred CCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCC-cccCHHHHHHHHH
Confidence 3321110 001111000 000000 00001111 111233432 4677788999999
Q ss_pred HHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh-hhhh
Q 005056 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-TVRK 241 (716)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S-~VR~ 241 (716)
..+.+.|+ .|..++-|+++....+.+. -|+ ..-| .|++.++|.|.|.+. -|-+
T Consensus 195 ~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~-gVe-T~~G-----~iet~~~VNaaGvWAr~Vg~ 248 (856)
T KOG2844|consen 195 RAASALGA-------------------LVIENCPVTGLHVETDKFG-GVE-TPHG-----SIETECVVNAAGVWAREVGA 248 (856)
T ss_pred HHHHhcCc-------------------EEEecCCcceEEeecCCcc-cee-ccCc-----ceecceEEechhHHHHHhhh
Confidence 99999998 8899999999876544432 232 1134 589999999999985 3444
Q ss_pred hcCC
Q 005056 242 LVGI 245 (716)
Q Consensus 242 ~lgi 245 (716)
..|.
T Consensus 249 m~gv 252 (856)
T KOG2844|consen 249 MAGV 252 (856)
T ss_pred hcCC
Confidence 4443
No 207
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.85 E-value=7.8e-05 Score=81.89 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 58999999999999999999999999999988764
No 208
>PRK14727 putative mercuric reductase; Provisional
Probab=97.83 E-value=0.0004 Score=78.78 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+.++||+||||||+|+++|..|+++|.+|+||||...
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 4569999999999999999999999999999998743
No 209
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.83 E-value=0.00024 Score=77.36 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=90.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC---CCC---eeeeCh---------------------hHHHHHHh
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST---HPQ---AHFINN---------------------RYALVFRK 97 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~---~p~---a~~i~~---------------------rtmeilr~ 97 (716)
||+|||+|.+||++|+.|++. ++|+|+-|.+.... ..+ +..+.+ .+.+.+-.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999999 99999999876521 111 112221 11111110
Q ss_pred -hhchHHHHHhcCCCccccceeEEeecCCC-CceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecc
Q 005056 98 -LDGLAEEIERSQPPVDLWRKFIYCTSVTG-PILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTS 175 (716)
Q Consensus 98 -l~Gl~~~l~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~ 175 (716)
-+-..+.+...|.+.+.-..-.+..++.| ....++-+. ..-.-..+.+.|.+++++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~--------------~~~TG~~I~~~L~~~v~~~p~----- 148 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHA--------------ADATGKEIMTALLKKVRNRPN----- 148 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEe--------------cCCccHHHHHHHHHHHhcCCC-----
Confidence 00122334445554432111111111111 000000000 001235678888888887543
Q ss_pred cccccccccccccceEEeCcEEEEEEecCC-eE-EEEEEeccCCceeeEEEEecEEEecCCCChhh
Q 005056 176 EGTEGLHNHLLQGREILMGHECVSVSATDQ-CI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (716)
Q Consensus 176 ~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~-gv-~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (716)
++|+.++.+.++..+++ ++ -+.+. ..++ +..++.++.||-|.|.-+.+
T Consensus 149 -------------I~v~e~~~a~~li~~~~~~~~Gv~~~-~~~~--~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 149 -------------ITVLEGAEALDLIIEDGIGVAGVLVL-NRNG--ELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred -------------cEEEecchhhhhhhcCCceEeEEEEe-cCCC--eEEEEecCeEEEecCCCccc
Confidence 59999999999988877 33 12232 1222 34689999999999987754
No 210
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.83 E-value=0.00034 Score=85.21 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+.++||||||||.+||++|+.+++.|.+|+|+||.+.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4568999999999999999999999999999999874
No 211
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.82 E-value=0.00013 Score=74.53 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCCCCCC---------CeeeeChhHHHHH---HhhhchHHHH
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP---------QAHFINNRYALVF---RKLDGLAEEI 105 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~~~~p---------~a~~i~~rtmeil---r~l~Gl~~~l 105 (716)
...++|.+|||||++||+.|..|.-+ +.+|.|+|+......+. .+++..|.++..- +-+.=+.+-+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 46679999999999999999999877 99999999998764322 2455556555321 1110011222
Q ss_pred HhcCCCccccceeEEeecC------------------------CCCceeeccCCCccccccccCCccccccChHHHHHHH
Q 005056 106 ERSQPPVDLWRKFIYCTSV------------------------TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLL 161 (716)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~------------------------~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L 161 (716)
.+...|.......+..+.. .|.++.+.... -.......+|... .++-..+..-+
T Consensus 125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~-crgvkAl~sPhtG-IvD~~~v~ls~ 202 (453)
T KOG2665|consen 125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPY-CRGVKALLSPHTG-IVDWGSVTLSF 202 (453)
T ss_pred hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChh-hhhhhhhcCCCcc-eeehHHHHHHH
Confidence 2333332221111111110 01111100000 0011222333322 23333444445
Q ss_pred HHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCe---EEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC---INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~g---v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
.+..+..|. .+..+-++..+.+..++ .-+++. +|. ..++++++||.|.|-.|-
T Consensus 203 ~edF~~~gg-------------------~i~~n~~l~g~~~n~~~~~~Ypivv~---ngk--~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 203 GEDFDFMGG-------------------RIYTNFRLQGIAQNKEATFSYPIVVL---NGK--GEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHhcc-------------------cccccceeccchhccCCCCCCceEEe---cCc--cceeEEeEEEEeccccHh
Confidence 555666666 78889999999887764 334444 343 247899999999998865
Q ss_pred -hhhhcCCC
Q 005056 239 -VRKLVGID 246 (716)
Q Consensus 239 -VR~~lgi~ 246 (716)
+...-|.+
T Consensus 259 r~aa~sgc~ 267 (453)
T KOG2665|consen 259 RCAALSGCE 267 (453)
T ss_pred HHHHHhCCC
Confidence 33334544
No 212
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.82 E-value=0.0001 Score=82.82 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~ 78 (716)
+|+|||||++|+++|..|+++| .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 6999999999999999999985 589999998764
No 213
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.81 E-value=0.00013 Score=81.71 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS 79 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~~ 79 (716)
+|+|||||++|+.+|..|+++ +.+|+|||+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 799999999999999999987 68999999997654
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.81 E-value=0.00028 Score=78.50 Aligned_cols=113 Identities=26% Similarity=0.388 Sum_probs=82.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEe
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (716)
..-.++|||||+.|+=+|..+++.|.+|+|||+.+.+.+ +..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------------------~~D------------------- 213 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------------------GED------------------- 213 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------------------cCC-------------------
Confidence 345799999999999999999999999999999986421 111
Q ss_pred ecCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEE
Q 005056 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (716)
Q Consensus 122 ~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~ 201 (716)
.++-+.+.+.+++.|+ .++.+++++.++
T Consensus 214 ---------------------------------~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~~ 241 (454)
T COG1249 214 ---------------------------------PEISKELTKQLEKGGV-------------------KILLNTKVTAVE 241 (454)
T ss_pred ---------------------------------HHHHHHHHHHHHhCCe-------------------EEEccceEEEEE
Confidence 1234445566666555 899999999999
Q ss_pred ecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhhhhcCCCcccc
Q 005056 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE 250 (716)
Q Consensus 202 ~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~ 250 (716)
..++++.+++. +|.. .++++|.|+.|-|.. |-=+.||++..|-
T Consensus 242 ~~~~~v~v~~~---~g~~--~~~~ad~vLvAiGR~-Pn~~~LgLe~~Gv 284 (454)
T COG1249 242 KKDDGVLVTLE---DGEG--GTIEADAVLVAIGRK-PNTDGLGLENAGV 284 (454)
T ss_pred ecCCeEEEEEe---cCCC--CEEEeeEEEEccCCc-cCCCCCChhhcCc
Confidence 98888777766 3321 268899999999965 3334455444443
No 215
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.80 E-value=0.00035 Score=85.87 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=34.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+||+||||||+||++|+.|++.|++|+|||+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998765
No 216
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.80 E-value=4.8e-05 Score=92.26 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=33.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...+|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 357899999999999999999999999999998864
No 217
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.76 E-value=0.00033 Score=80.13 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=36.9
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
++..++||||||||.+||.+|+.++..|++|+|+||.....
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 34567999999999999999999999999999999997654
No 218
>PRK07208 hypothetical protein; Provisional
Probab=97.75 E-value=2.9e-05 Score=88.13 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=35.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
|...+|+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 55679999999999999999999999999999998765
No 219
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.74 E-value=0.00013 Score=69.62 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCCEEEECCCCC
Q 005056 47 LIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKA 77 (716)
Q Consensus 47 lIVGaGpaGLt~Al~Lar~-----Gi~v~liEr~~~ 77 (716)
+||||||+|++++..|.++ .++++|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999888 579999999543
No 220
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=0.00042 Score=78.37 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=75.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
.-.|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------~~d-------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------GTD-------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------CCC--------------------
Confidence 35899999999999999999999999999998654310 000
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..+...|.+.+++.|+ ++++++++++++.
T Consensus 215 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~ 243 (466)
T PRK06115 215 --------------------------------TETAKTLQKALTKQGM-------------------KFKLGSKVTGATA 243 (466)
T ss_pred --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEEE
Confidence 0122334555666676 9999999999988
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+++++.+++...++|+ ..++.+|+||.|-|...
T Consensus 244 ~~~~v~v~~~~~~~g~--~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 244 GADGVSLTLEPAAGGA--AETLQADYVLVAIGRRP 276 (466)
T ss_pred cCCeEEEEEEEcCCCc--eeEEEeCEEEEccCCcc
Confidence 7777776665333332 34799999999999653
No 221
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.70 E-value=3.6e-05 Score=86.40 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=33.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46999999999999999999999999999999975
No 222
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.70 E-value=0.00023 Score=79.39 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+.+.+|||||||.+|+.+|..|.+.+++|+|||+++..
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 3455579999999999999999998888999999988754
No 223
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.70 E-value=0.00045 Score=78.04 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=73.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+...+. +
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------~------------------------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG----------------E------------------------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC----------------C-------------------------
Confidence 58999999999999999999999999999988642100 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
...+...+.+.+++.|+ ++++++++.+++.+
T Consensus 210 ------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 210 ------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEKN 240 (461)
T ss_pred ------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence 01122334555666676 99999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++++++... +|. ..++.+|.||.|.|...
T Consensus 241 ~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 241 DDQVVYENK---GGE--TETLTGEKVLVAVGRKP 269 (461)
T ss_pred CCEEEEEEe---CCc--EEEEEeCEEEEecCCcc
Confidence 777665433 342 24689999999999765
No 224
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.68 E-value=0.00037 Score=79.02 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
++||+||||||+|+.+|+.++++|.+|.|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999985
No 225
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.68 E-value=0.00039 Score=78.63 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|+||||||+|+.+|..|+++|.+|+||||.+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999875
No 226
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.67 E-value=0.00053 Score=75.85 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. +. +
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~----------------~~--~---------------------- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG----------------RN--A---------------------- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh----------------hh--c----------------------
Confidence 4799999999999999999999999999998763210 00 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
...+...+.+.+++.|+ ++++++++++++.
T Consensus 185 ------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~- 214 (396)
T PRK09754 185 ------------------------------PPPVQRYLLQRHQQAGV-------------------RILLNNAIEHVVD- 214 (396)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCeeEEEEc-
Confidence 01123345555666776 8999999999976
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
++.+.+++. +|+ ++.+|+||.|-|....
T Consensus 215 ~~~~~v~l~---~g~----~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 215 GEKVELTLQ---SGE----TLQADVVIYGIGISAN 242 (396)
T ss_pred CCEEEEEEC---CCC----EEECCEEEECCCCChh
Confidence 445544443 453 6899999999998643
No 227
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.67 E-value=0.00045 Score=78.05 Aligned_cols=98 Identities=21% Similarity=0.332 Sum_probs=72.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEee
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (716)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. .+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d-------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------FLD-------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cCC--------------------
Confidence 35899999999999999999999999999998763210 000
Q ss_pred cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEe
Q 005056 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (716)
Q Consensus 123 ~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~ 202 (716)
..+...|.+.+++.|+ +++.++++++++.
T Consensus 216 --------------------------------~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~ 244 (461)
T PRK05249 216 --------------------------------DEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG 244 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence 0122334555566676 8999999999987
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 203 ~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+++++++++. +|+ ++.+|.||.|.|.+.
T Consensus 245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p 272 (461)
T PRK05249 245 GDDGVIVHLK---SGK----KIKADCLLYANGRTG 272 (461)
T ss_pred eCCeEEEEEC---CCC----EEEeCEEEEeecCCc
Confidence 7777665542 443 689999999999764
No 228
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.64 E-value=0.00028 Score=78.05 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=32.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~~ 78 (716)
...+|+|||||++|+++|..|+++|. +++|+++.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 34589999999999999999999986 79999988654
No 229
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.0007 Score=76.48 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+. + .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~---~--------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------E---D--------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------------C---C---------------------
Confidence 47999999999999999999999999999987643100 0 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 213 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 242 (462)
T PRK06416 213 -------------------------------KEISKLAERALKKRGI-------------------KIKTGAKAKKVEQT 242 (462)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence 0112334445556676 99999999999987
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++++++.+. ++++ ..++.+|+||-|-|...
T Consensus 243 ~~~v~v~~~--~gg~--~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 243 DDGVTVTLE--DGGK--EETLEADYVLVAVGRRP 272 (462)
T ss_pred CCEEEEEEE--eCCe--eEEEEeCEEEEeeCCcc
Confidence 777666554 2232 35799999999999753
No 230
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=0.0012 Score=74.40 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|+||||||+|+++|..|++.|.+|+||||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999875
No 231
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.59 E-value=0.00074 Score=76.31 Aligned_cols=100 Identities=14% Similarity=0.286 Sum_probs=72.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------REE--------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------ccC---------------------
Confidence 5899999999999999999999999999998754310 000
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 207 -------------------------------PEISAAVEEALAEEGI-------------------EVVTSAQVKAVSVR 236 (463)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEc
Confidence 0112234445556666 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++.+.+++... ++ ..++.+|.||.|-|...
T Consensus 237 ~~~~~v~~~~~-~~---~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 237 GGGKIITVEKP-GG---QGEVEADELLVATGRRP 266 (463)
T ss_pred CCEEEEEEEeC-CC---ceEEEeCEEEEeECCCc
Confidence 66666655421 12 24789999999999643
No 232
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.58 E-value=0.0011 Score=75.16 Aligned_cols=101 Identities=22% Similarity=0.347 Sum_probs=73.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.+.. ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AA---------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cC----------------------
Confidence 5899999999999999999999999999998764310 00
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
+ ..+...+.+.+++.|+ +++.++++++++.+
T Consensus 223 -----------------------------d-~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~ 253 (475)
T PRK06327 223 -----------------------------D-EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKTG 253 (475)
T ss_pred -----------------------------C-HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEEc
Confidence 0 0122234444555666 99999999999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++++.+++.+. +|+ +.++.+|.||.|-|...
T Consensus 254 ~~~v~v~~~~~-~g~--~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 254 GKGVSVAYTDA-DGE--AQTLEVDKLIVSIGRVP 284 (475)
T ss_pred CCEEEEEEEeC-CCc--eeEEEcCEEEEccCCcc
Confidence 77776665421 232 35799999999999654
No 233
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.57 E-value=6.7e-05 Score=85.46 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=33.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.||+|||||++||++|..|++.|++|+|+||+..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999999765
No 234
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00096 Score=75.50 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999998864
No 235
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.001 Score=75.33 Aligned_cols=101 Identities=23% Similarity=0.403 Sum_probs=73.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~---------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------NE---------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cc----------------------
Confidence 5899999999999999999999999999997653210 00
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
...+...+.+.+++.|+ ++++++++++++.+
T Consensus 212 ------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 242 (466)
T PRK07818 212 ------------------------------DAEVSKEIAKQYKKLGV-------------------KILTGTKVESIDDN 242 (466)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence 01122335555666776 99999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
++.+++++.. .+|+ ..++.+|.||.|-|...
T Consensus 243 ~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 243 GSKVTVTVSK-KDGK--AQELEADKVLQAIGFAP 273 (466)
T ss_pred CCeEEEEEEe-cCCC--eEEEEeCEEEECcCccc
Confidence 6666655532 2343 24799999999999643
No 236
>PLN02546 glutathione reductase
Probab=97.55 E-value=0.00055 Score=78.68 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=32.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..++||+||||||+|+.+|..++++|.+|+|||+.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 111 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELP 111 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 34589999999999999999999999999999973
No 237
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.55 E-value=7.7e-05 Score=84.97 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+||+|||||++||++|..|+++|.+|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 58999999999999999999999999999999876
No 238
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=8.8e-05 Score=83.56 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=36.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
.+.+.+|+|||||++||++|..|...|++|+|+|.+..+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 3566899999999999999999999999999999998663
No 239
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.54 E-value=0.0001 Score=83.31 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=47.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC------CCe-------ee---eChhHHHHHHhhhchHHHHH
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQA-------HF---INNRYALVFRKLDGLAEEIE 106 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~------p~a-------~~---i~~rtmeilr~l~Gl~~~l~ 106 (716)
+|+|||||++||++|..|+++|++|+|+|+++.+... ..+ +. ..++.+++++++ |+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~~ 77 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNLL 77 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCccccc
Confidence 5899999999999999999999999999998865321 111 11 236678888888 8876653
No 240
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.52 E-value=8.7e-05 Score=83.92 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=32.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4589999999999999999999999999999986
No 241
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.51 E-value=0.00079 Score=72.64 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 157 Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
+.+-+++.+++.|. +++|+++|.+++..++.+..... .+|. +|.+|+||.|=|..
T Consensus 175 vvkni~~~l~~~G~-------------------ei~f~t~VeDi~~~~~~~~~v~~--~~g~----~i~~~~vvlA~Grs 229 (486)
T COG2509 175 VVKNIREYLESLGG-------------------EIRFNTEVEDIEIEDNEVLGVKL--TKGE----EIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHhcCc-------------------EEEeeeEEEEEEecCCceEEEEc--cCCc----EEecCEEEEccCcc
Confidence 34457788888887 99999999999988876433322 2453 79999999999976
Q ss_pred hh-----hhhhcCCCcc
Q 005056 237 ST-----VRKLVGIDLV 248 (716)
Q Consensus 237 S~-----VR~~lgi~~~ 248 (716)
+. +-+++|+.+.
T Consensus 230 g~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 230 GRDWFEMLHKKLGVKMR 246 (486)
T ss_pred hHHHHHHHHHhcCcccc
Confidence 43 4455666654
No 242
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.0001 Score=75.84 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=42.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhh
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l 98 (716)
+++||+|||||.+||++|+.|+++|.+|.||-+... +.-++..++.+|-++
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs------ALhfsSGslDlL~~l 51 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS------ALHFSSGSLDLLGRL 51 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh------hhhcccccHHHhhcC
Confidence 369999999999999999999999999999998764 334455566676665
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.50 E-value=0.0012 Score=74.50 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5899999999999999999999999999998764
No 244
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.50 E-value=0.00011 Score=79.28 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=34.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
.-+|||||||++|+++|+.|++.|++|.|+||++...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 4689999999999999999999999999999999764
No 245
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.48 E-value=0.0001 Score=83.28 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999983
No 246
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.47 E-value=0.00017 Score=81.14 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHh--CCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar--~Gi~v~liEr~~~~ 78 (716)
....+|+||||||+||.+|..|++ .|++|+||||.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345789999999999999999987 79999999999754
No 247
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.43 E-value=0.00011 Score=83.97 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=31.7
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
|+|||||++||++|..|++.|++|+|+||+..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 699999999999999999999999999999876
No 248
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.41 E-value=0.0015 Score=73.17 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 47999999999999999999999999999997643
No 249
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=0.0015 Score=73.97 Aligned_cols=34 Identities=29% Similarity=0.611 Sum_probs=32.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5899999999999999999999999999998864
No 250
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.38 E-value=0.00017 Score=78.39 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=32.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+||+|||||++||++|..|++.|.+|+|+|++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997643
No 251
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.38 E-value=0.00018 Score=86.87 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 3479999999999999999999999999999998754
No 252
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.37 E-value=0.002 Score=72.83 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=72.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.+... ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------~d--------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-------------------ED--------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-------------------CC---------------------
Confidence 47999999999999999999999999999986543110 00
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...+.+.+++.|+ +++.++++.+++.+
T Consensus 218 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~ 247 (466)
T PRK07845 218 -------------------------------ADAAEVLEEVFARRGM-------------------TVLKRSRAESVERT 247 (466)
T ss_pred -------------------------------HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEEe
Confidence 0112334555666676 89999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
++++++++. +|+ ++.+|.||.|-|....
T Consensus 248 ~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 248 GDGVVVTLT---DGR----TVEGSHALMAVGSVPN 275 (466)
T ss_pred CCEEEEEEC---CCc----EEEecEEEEeecCCcC
Confidence 777665543 443 6899999999997643
No 253
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.36 E-value=0.0014 Score=71.93 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
.+|+|||||++|+.+|..|.++ ..+++||++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 4899999999999999999886 5789999998754
No 254
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.36 E-value=0.00017 Score=80.22 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=36.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
+.++||+|||+|.+|+++|..|++.|.+|+++||+....
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 567999999999999999999999999999999998764
No 255
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.33 E-value=0.0011 Score=68.10 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=88.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC--CCeeeeChhHHHHHHhhhchHHH--------HHhc---CC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQAHFINNRYALVFRKLDGLAEE--------IERS---QP 110 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~--p~a~~i~~rtmeilr~l~Gl~~~--------l~~~---~~ 110 (716)
.+|+|||+|.+||+++..|-..|-.|+|+|+....... ....+||.-..|.-+.+ ++.|. +... +.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~-~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKL-HIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhc-ccccChHHHhhhhhhhcccCCc
Confidence 38999999999999999998776569999999876322 22355664433333333 33221 1110 00
Q ss_pred CccccceeE-----EeecCCCCceeeccCC------CccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccc
Q 005056 111 PVDLWRKFI-----YCTSVTGPILGSVDHM------QPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE 179 (716)
Q Consensus 111 ~~~~~~~~~-----~~~~~~g~~l~~~~~~------~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~ 179 (716)
|. .+.... -..++.++.-..++.. +...-.+...|.+ +-..+...|..++++... ..++
T Consensus 89 ~e-Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plp----pgfei~~~L~~~l~k~as--~~pe--- 158 (477)
T KOG2404|consen 89 PE-LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLP----PGFEIVKALSTRLKKKAS--ENPE--- 158 (477)
T ss_pred HH-HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCC----CchHHHHHHHHHHHHhhh--cChH---
Confidence 00 000000 0000001000000000 0000000011111 123455566666554321 0000
Q ss_pred cccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 180 ~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
-++|..+++|+.+..+++.|.....-..+|+ ...+.++-||-|.|..+-
T Consensus 159 --------~~ki~~nskvv~il~n~gkVsgVeymd~sge--k~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 --------LVKILLNSKVVDILRNNGKVSGVEYMDASGE--KSKIIGDAVVLATGGFGY 207 (477)
T ss_pred --------HHhhhhcceeeeeecCCCeEEEEEEEcCCCC--ccceecCceEEecCCcCc
Confidence 1488999999999988887765443233443 457889999999998774
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00022 Score=78.50 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=34.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~ 80 (716)
+.|+|+|||++||++|..|+.+|++|+|+|+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 3799999999999999999999999999999987643
No 257
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.32 E-value=0.00021 Score=80.79 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 258
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00079 Score=65.67 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
....+|+|||.||++-++|++++|.-++.+|||-.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 34469999999999999999999999999999954
No 259
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.31 E-value=0.0013 Score=71.80 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHhC---CCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~---Gi~v~liEr~~~~ 78 (716)
+|||||||++|+.+|..|.++ +.+|+|||+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 489999999999999999754 7899999988764
No 260
>PRK12831 putative oxidoreductase; Provisional
Probab=97.30 E-value=0.00027 Score=79.64 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999987643
No 261
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.29 E-value=0.002 Score=72.42 Aligned_cols=96 Identities=20% Similarity=0.384 Sum_probs=70.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. ++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~d--------------------- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------GFD--------------------- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------ccC---------------------
Confidence 4799999999999999999999999999998654310 000
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...+.+.+++.|+ +++.++++.+++.+
T Consensus 207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 207 -------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITKT 236 (446)
T ss_pred -------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence 0122234455666676 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
++++++++. +++ ++.+|.||-|-|..
T Consensus 237 ~~~~~v~~~---~g~----~i~~D~viva~G~~ 262 (446)
T TIGR01424 237 DDGLKVTLS---HGE----EIVADVVLFATGRS 262 (446)
T ss_pred CCeEEEEEc---CCc----EeecCEEEEeeCCC
Confidence 777665543 342 68999999999864
No 262
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.29 E-value=0.0027 Score=70.11 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=35.8
Q ss_pred cceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhhh
Q 005056 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (716)
Q Consensus 188 ~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR 240 (716)
+.+|+++++|++|+.++++|++++. +|+ +++||+||.|-......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhhh
Confidence 3489999999999999999888775 453 789999999888665444
No 263
>PRK07846 mycothione reductase; Reviewed
Probab=97.22 E-value=0.0029 Score=71.19 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=32.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 35899999999999999999999999999998764
No 264
>PLN02507 glutathione reductase
Probab=97.21 E-value=0.0032 Score=71.71 Aligned_cols=34 Identities=9% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 4799999999999999999999999999998753
No 265
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.21 E-value=0.0036 Score=70.42 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5899999999999999999999999999998864
No 266
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.19 E-value=0.0041 Score=69.82 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4899999999999999999999999999998653
No 267
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.19 E-value=0.00045 Score=77.69 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=34.3
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
....+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34579999999999999999999999999999998643
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.17 E-value=0.0048 Score=69.65 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5899999999999999999999999999998764
No 269
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.17 E-value=0.0022 Score=65.06 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=32.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC------CCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~G------i~v~liEr~~~~ 78 (716)
..|+|||||+.|..+|++|++++ +.++|||+..-.
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 78999999999999999999998 899999988643
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.14 E-value=0.00045 Score=83.09 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 3468999999999999999999999999999998764
No 271
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.13 E-value=0.00045 Score=82.16 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
...+|+||||||+||++|..|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 44689999999999999999999999999999875
No 272
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00075 Score=69.90 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=27.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEE
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSV 71 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~l 71 (716)
...+|||||||||+|.++|++-+|.|++.=|
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl 239 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGL 239 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhh
Confidence 4559999999999999999999999998543
No 273
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.11 E-value=0.0037 Score=69.86 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 5899999999999999999999999999998764
No 274
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.10 E-value=0.00051 Score=81.01 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=33.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3469999999999999999999999999999998654
No 275
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.00055 Score=70.50 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=33.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+|.+|||+|.+|+++|..|+++|.+|+||||++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 79999999999999999999999999999999866
No 276
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.09 E-value=0.0006 Score=75.77 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHH-HhCCCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~L-ar~Gi~v~liEr~~~~ 78 (716)
...|+||||||+||.+|..| ++.|++|+||||.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46799999999999999965 5779999999999876
No 277
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.09 E-value=0.00058 Score=74.82 Aligned_cols=49 Identities=24% Similarity=0.496 Sum_probs=41.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhh
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l 98 (716)
+||+|||||++|+++|+.|+++|.+|+|+|+... +..++..++.+|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998752 455666777777655
No 278
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.09 E-value=0.0004 Score=73.45 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS 79 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~ 79 (716)
+||||||+|++|+++|..|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 7999999997654
No 279
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.08 E-value=0.00064 Score=76.96 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4469999999999999999999999999999998765
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.08 E-value=0.0029 Score=76.29 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~~ 79 (716)
+.+|||||||++|+.+|..|.++ +++|+||++.+.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 34899999999999999999764 58999999998754
No 281
>PLN02785 Protein HOTHEAD
Probab=97.07 E-value=0.00094 Score=77.26 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=34.9
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+.....+|+||||||.+|+.+|..|++ +.+|+|||+...+
T Consensus 50 ~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~ 89 (587)
T PLN02785 50 SGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP 89 (587)
T ss_pred ccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence 334556999999999999999999999 6999999998753
No 282
>PRK02106 choline dehydrogenase; Validated
Probab=97.04 E-value=0.00065 Score=78.67 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.8
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHh-CCCCEEEECCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA 77 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar-~Gi~v~liEr~~~ 77 (716)
+..++||+|||||++|+++|..|++ .|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4566999999999999999999999 7999999999964
No 283
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.04 E-value=0.0061 Score=68.62 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5899999999999999999999999999998653
No 284
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.065 Score=55.05 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=39.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCC-------CCEEEECCCCCCCCC--CCeeeeChh-----HHHHHHhh
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAFSTH--PQAHFINNR-----YALVFRKL 98 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~G-------i~v~liEr~~~~~~~--p~a~~i~~r-----tmeilr~l 98 (716)
..+|+|||+|..||++|+.+.+++ ++|.|++-+..+... ..|..+.+. +.++-+++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w 72 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQW 72 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHH
Confidence 368999999999999999988854 678898877665332 233444444 35555555
No 285
>PRK07846 mycothione reductase; Reviewed
Probab=97.03 E-value=0.0047 Score=69.51 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
++||+||||||+|.++|.. +.|.+|.||||..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999988865 4699999999853
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.03 E-value=0.0048 Score=74.21 Aligned_cols=108 Identities=19% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. +.+ .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~---------------~~l---d--------------------- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA---------------KQL---D--------------------- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh---------------hhc---C---------------------
Confidence 4799999999999999999999999999997653200 001 0
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...|.+.+++.|+ +++++++++++..+
T Consensus 182 -------------------------------~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 182 -------------------------------QTAGRLLQRELEQKGL-------------------TFLLEKDTVEIVGA 211 (785)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCceEEEEcC
Confidence 0112334455666776 89999999998765
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCCh--hhhhhcCCCc
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGIDL 247 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S--~VR~~lgi~~ 247 (716)
+....+++. +|+ ++.+|+||.|-|.+. .+-+..|+..
T Consensus 212 ~~~~~v~~~---dG~----~i~~D~Vi~a~G~~Pn~~la~~~gl~~ 250 (785)
T TIGR02374 212 TKADRIRFK---DGS----SLEADLIVMAAGIRPNDELAVSAGIKV 250 (785)
T ss_pred CceEEEEEC---CCC----EEEcCEEEECCCCCcCcHHHHhcCCcc
Confidence 443334433 453 689999999999763 3344455544
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.02 E-value=0.0059 Score=68.58 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 579999999999999999999999999998765
No 288
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.02 E-value=0.00064 Score=83.36 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 468999999999999999999999999999998654
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.01 E-value=0.005 Score=74.25 Aligned_cols=109 Identities=16% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
..|+|||||+.|+-+|..|++.|.+|+|+|+.+..-. +++
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------------~~l------------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------------EQL------------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------------hhc-------------------------
Confidence 4799999999999999999999999999998653100 001
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
.......|.+.+++.|+ +++.+++++++..+
T Consensus 186 ------------------------------d~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~ 216 (847)
T PRK14989 186 ------------------------------DQMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE 216 (847)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence 01122345566677777 99999999999765
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCChh--hhhhcCCC
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID 246 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~--VR~~lgi~ 246 (716)
++.....+.+. +|+ ++.+|+||.|-|.+.. +.+..|+.
T Consensus 217 ~~~~~~~v~~~-dG~----~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 217 GVEARKTMRFA-DGS----ELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred CCCceEEEEEC-CCC----EEEcCEEEECCCcccCchHHhhcCcc
Confidence 33222233322 453 6899999999997643 34445544
No 290
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.01 E-value=0.0024 Score=68.18 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=89.9
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccce
Q 005056 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK 117 (716)
Q Consensus 39 ~~~~~~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~ 117 (716)
|++...|++.||-||.-|++|++|..++ .+++.+||.+..+-||.+. +...+|++- ..+.+.....|...
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv~-----FlkDLVTl~~PTs~--- 71 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQVP-----FLKDLVTLVDPTSP--- 71 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCcccccc-----chhhhccccCCCCc---
Confidence 3566799999999999999999999886 7899999999999998553 233333221 11122222222111
Q ss_pred eEEee--cCCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCc
Q 005056 118 FIYCT--SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (716)
Q Consensus 118 ~~~~~--~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~ 195 (716)
+.+.. ...|+.. . .--....+++|.+..+.+.=.+.... .++||.
T Consensus 72 ySFLNYL~~h~RLy---------~----Fl~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~ 118 (436)
T COG3486 72 YSFLNYLHEHGRLY---------E----FLNYETFHIPRREYNDYCQWAASQLP--------------------SLRFGE 118 (436)
T ss_pred hHHHHHHHHcchHh---------h----hhhhhcccccHHHHHHHHHHHHhhCC--------------------ccccCC
Confidence 11100 0011111 0 11122457789999999988877663 689999
Q ss_pred EEEEEEe-cCCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 196 ECVSVSA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 196 ~v~~i~~-~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
+|+.|.. +.+.+........+++ ..+|+-||..-|..
T Consensus 119 ~V~~i~~~~~d~~~~~~~~t~~~~----~y~ar~lVlg~G~~ 156 (436)
T COG3486 119 EVTDISSLDGDAVVRLFVVTANGT----VYRARNLVLGVGTQ 156 (436)
T ss_pred eeccccccCCcceeEEEEEcCCCc----EEEeeeEEEccCCC
Confidence 9997732 2233222112122332 67788777777754
No 291
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.01 E-value=0.00084 Score=75.72 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4468999999999999999999999999999998754
No 292
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.99 E-value=0.0075 Score=68.49 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
-.|+|||||++|+-+|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4799999999999999999999999999986
No 293
>PRK14694 putative mercuric reductase; Provisional
Probab=96.98 E-value=0.0083 Score=67.93 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=29.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999863
No 294
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0026 Score=65.65 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+...|-|||||.+|.-+|+.++++||+|.|+|.++..
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 4578999999999999999999999999999988643
No 295
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.96 E-value=0.00082 Score=80.55 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 446999999999999999999999999999998654
No 296
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.00092 Score=71.38 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=48.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCE--EEECCCCCCCCC---------------CCe----eeeChhHHHHHHhhh
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFSTH---------------PQA----HFINNRYALVFRKLD 99 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v--~liEr~~~~~~~---------------p~a----~~i~~rtmeilr~l~ 99 (716)
.+..+|+|||||++||++|++|++++-+| +|+|+.+...-. |+. .-...++++++..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL- 87 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL- 87 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-
Confidence 45579999999999999999999998765 559998765211 111 11223678888888
Q ss_pred chHHHHHhc
Q 005056 100 GLAEEIERS 108 (716)
Q Consensus 100 Gl~~~l~~~ 108 (716)
|+.+++...
T Consensus 88 Gl~~e~~~i 96 (491)
T KOG1276|consen 88 GLEDELQPI 96 (491)
T ss_pred Cccceeeec
Confidence 998776543
No 297
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.95 E-value=0.0013 Score=67.83 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=38.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCe
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA 84 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a 84 (716)
+...||+|||||.+||.+|..|+..|.+|+|+|+..+.+--.++
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 56789999999999999999999999999999998876554443
No 298
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.0058 Score=67.47 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+|+|||+|+.||.+|..|+++|++|+++|+.+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 369999999999999999999999999999998765
No 299
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.94 E-value=0.0092 Score=68.04 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 3799999999999999999999999999986
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.93 E-value=0.0063 Score=68.26 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4799999999999999999999999999998764
No 301
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=96.92 E-value=0.0056 Score=58.90 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred chhhhhccc--CCceEEEcCCceEEEeeC
Q 005056 658 SWWRICKMT--DMGAILVRPDDHIAWRSK 684 (716)
Q Consensus 658 ~~~~~~~~~--~~gavLVRPDg~VaWr~~ 684 (716)
.-++.+|+. ..++|+|||||||+|.+.
T Consensus 125 ~~~~~~gv~~~~g~vvvvRPDgyVg~~~~ 153 (167)
T cd02979 125 DAYEKYGIDPERGAVVVVRPDQYVALVGP 153 (167)
T ss_pred cHHHhhCCCCCCCCEEEECCCCeEEEEec
Confidence 455668888 457899999999999875
No 302
>PRK14727 putative mercuric reductase; Provisional
Probab=96.90 E-value=0.0097 Score=67.54 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999864
No 303
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.90 E-value=0.01 Score=64.13 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=81.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCCCCCC---C-CeeeeChhHHHHHHhhhchHHHHHhcCCCccc
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTH---P-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~~~~~---p-~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~ 114 (716)
.....|+|||||.++.-.++.|.+++- +|.++=|++...+. + -...++|.-++.|..+ .- +.+.......
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l-~~--~~R~~~l~~~- 263 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL-PD--EERRELLREQ- 263 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS--H--HHHHHHHHHT-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC-CH--HHHHHHHHHh-
Confidence 455789999999999999999999875 89999998865321 1 1246788888888766 22 2211110000
Q ss_pred cceeEEeecCCCCceeeccCCCccccccccCCccccccChHH---HHHHHHHH-HHhcCceeecccccccccccccccce
Q 005056 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK---LNKLLLKQ-LEKLNFKICTSEGTEGLHNHLLQGRE 190 (716)
Q Consensus 115 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~---Le~~L~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~ 190 (716)
+. ...-.++... |.+.|++. +...+ .+.
T Consensus 264 -~~-----------------------------~ny~~i~~~~l~~iy~~lY~~~v~g~~------------------~~~ 295 (341)
T PF13434_consen 264 -RH-----------------------------TNYGGIDPDLLEAIYDRLYEQRVSGRG------------------RLR 295 (341)
T ss_dssp -GG-----------------------------GTSSEB-HHHHHHHHHHHHHHHHHT---------------------SE
T ss_pred -Hh-----------------------------hcCCCCCHHHHHHHHHHHHHHHhcCCC------------------CeE
Confidence 00 0001122222 23333332 22111 148
Q ss_pred EEeCcEEEEEEecCC-eEEEEEEeccCCceeeEEEEecEEEecCCC
Q 005056 191 ILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGA 235 (716)
Q Consensus 191 v~~g~~v~~i~~~~~-gv~v~v~~~~~g~~~~~~i~ad~VVgADG~ 235 (716)
++.+++|++++..++ ++.+++.....++ ..++++|+||.|.|-
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~--~~~~~~D~VilATGy 339 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGE--EETLEVDAVILATGY 339 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCC--eEEEecCEEEEcCCc
Confidence 999999999999884 8999988655554 578999999999994
No 304
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.89 E-value=0.0088 Score=67.85 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=29.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhC---CCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~---Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|+.. |.+|+|+|+.+.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 5799999999999999877654 999999998764
No 305
>PTZ00058 glutathione reductase; Provisional
Probab=96.89 E-value=0.0076 Score=69.37 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=32.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-+|+|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 45799999999999999999999999999998753
No 306
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.89 E-value=0.0012 Score=74.57 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4468999999999999999999999999999998754
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.89 E-value=0.0046 Score=74.33 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCEEEECCCCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~---Gi~v~liEr~~~~ 78 (716)
|+|||||++|+.+|..|.++ +++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998775 5799999998875
No 308
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.87 E-value=0.0011 Score=73.89 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+.++||+||||||+|.++|+.+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 467999999999999999999999999999999996
No 309
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.86 E-value=0.0016 Score=76.10 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=32.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
.++||+||||||+|.++|+.++++|.+|+|||+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999999999999975
No 310
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.86 E-value=0.0012 Score=77.79 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3468999999999999999999999999999998764
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.80 E-value=0.014 Score=61.45 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 589999999999999999999999999999864
No 312
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.79 E-value=0.22 Score=53.38 Aligned_cols=63 Identities=27% Similarity=0.321 Sum_probs=49.4
Q ss_pred cccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEE
Q 005056 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~V 229 (716)
..++-..+...|.+.+.+.|+ +++++++|++++.++++++. +. .++| +++||.|
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~-v~-~~~g-----~~~a~~v 185 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTA-IV-TPSG-----DVQADQV 185 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEE-EE-cCCC-----EEECCEE
Confidence 355667888889899998887 99999999999987776532 22 2233 6899999
Q ss_pred EecCCCChh
Q 005056 230 IGTDGAGST 238 (716)
Q Consensus 230 VgADG~~S~ 238 (716)
|.|.|+.|.
T Consensus 186 V~a~G~~~~ 194 (337)
T TIGR02352 186 VLAAGAWAG 194 (337)
T ss_pred EEcCChhhh
Confidence 999999875
No 313
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.79 E-value=0.0086 Score=67.42 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
++||+|||+||+|..+|. +++|.+|.||||..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999999864 45799999999854
No 314
>PRK13748 putative mercuric reductase; Provisional
Probab=96.74 E-value=0.014 Score=67.78 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999974
No 315
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.72 E-value=0.014 Score=66.85 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 589999999999999999999999999998654
No 316
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.70 E-value=0.002 Score=69.99 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=33.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+|||||++|+.+|..|++.|++|+|||+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3468999999999999999999999999999998754
No 317
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.70 E-value=0.0018 Score=76.05 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=34.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3578999999999999999999999999999999864
No 318
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.69 E-value=0.0015 Score=73.97 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=31.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCCEEEECCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN 75 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~-Gi~v~liEr~ 75 (716)
.++||+||||||+|.++|+.+++. |.+|+||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 458999999999999999999996 9999999985
No 319
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.68 E-value=0.0016 Score=75.38 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998765
No 320
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.65 E-value=0.014 Score=68.38 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4799999999999999999999999999998765
No 321
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0055 Score=67.75 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+||+|||||-+|.-+|++.+|.|.+++|+--+...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dt 39 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDT 39 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCc
Confidence 4599999999999999999999999999999877644
No 322
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.60 E-value=0.013 Score=67.23 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||||++|+-+|..|+..|.+|+|+++.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 4899999999999999999999999999987653
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=0.0019 Score=71.96 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=33.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
-.|.||||||+||++|..|++.|+.|+|+|+.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 78999999999999999999999999999999875
No 324
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.55 E-value=0.0027 Score=72.06 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..+|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999999999999999999999999999998754
No 325
>PRK10262 thioredoxin reductase; Provisional
Probab=96.45 E-value=0.027 Score=60.34 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 5899999999999999999999999999998753
No 326
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.41 E-value=0.0038 Score=65.03 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~ 81 (716)
...+|.|||+|++||++|..|+++ .+|+|||.+.....|
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 447899999999999999999987 799999998766443
No 327
>PLN02546 glutathione reductase
Probab=96.38 E-value=0.026 Score=65.02 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 35899999999999999999999999999998654
No 328
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.38 E-value=0.021 Score=63.72 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=27.3
Q ss_pred CEEEECCCHHHHHHHHHHHh--------------CCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar--------------~Gi~v~liEr~~~ 77 (716)
.|+|||||++|+-+|..|+. .|.+|+|||+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999999975 3677777776653
No 329
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.26 E-value=0.031 Score=61.40 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=45.9
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEE
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VV 230 (716)
.++-..+...|.+.+.+ |+ +++++++|++++.+++++.++.. +|+ ++.||.||
T Consensus 131 ~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~vV 183 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVVV 183 (381)
T ss_pred ccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEEE
Confidence 44556666777777666 65 99999999999987777655432 442 58999999
Q ss_pred ecCCCChh
Q 005056 231 GTDGAGST 238 (716)
Q Consensus 231 gADG~~S~ 238 (716)
.|.|++|.
T Consensus 184 ~a~G~~~~ 191 (381)
T TIGR03197 184 LANGAQAG 191 (381)
T ss_pred EcCCcccc
Confidence 99999874
No 330
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.24 E-value=0.0046 Score=71.03 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=35.0
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+..++|+||||+|.+|.++|..|+..|++|+|+|+...
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 45679999999999999999999999999999999864
No 331
>PRK13984 putative oxidoreductase; Provisional
Probab=96.24 E-value=0.005 Score=72.01 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+|||+||+|+++|..|+++|++|+|||+.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998765
No 332
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.19 E-value=0.024 Score=61.86 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=34.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CCEEEECCCCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST 80 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~G--i~v~liEr~~~~~~ 80 (716)
.+..|+|||||-+||.+|..|.++- ++++||||+.....
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~ 42 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF 42 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc
Confidence 3468999999999999999999984 99999999987543
No 333
>PLN02976 amine oxidase
Probab=96.18 E-value=0.0056 Score=75.23 Aligned_cols=37 Identities=32% Similarity=0.568 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...+|+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3478999999999999999999999999999998655
No 334
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.18 E-value=0.059 Score=61.82 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=57.0
Q ss_pred cccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEE-EEEEeccCCceeeEEEEecE
Q 005056 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI 228 (716)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~-v~v~~~~~g~~~~~~i~ad~ 228 (716)
..++-..+...|.+.+.+.|+ +|+++++|++++.+++.+. +++.+..+|+ ..+|+|++
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~--~~~i~a~~ 181 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTGE--EERIEAQV 181 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCE
Confidence 356677788888888888887 9999999999998777654 4554333342 35799999
Q ss_pred EEecCCCChh-hhhhcCCC
Q 005056 229 LIGTDGAGST-VRKLVGID 246 (716)
Q Consensus 229 VVgADG~~S~-VR~~lgi~ 246 (716)
||-|-|++|. +.+.+|+.
T Consensus 182 VVnAaG~wa~~l~~~~g~~ 200 (516)
T TIGR03377 182 VINAAGIWAGRIAEYAGLD 200 (516)
T ss_pred EEECCCcchHHHHHhcCCC
Confidence 9999999975 55556653
No 335
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.03 E-value=0.0051 Score=70.80 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=31.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~ 77 (716)
||||||||.+|+++|..|++.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999974
No 336
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.027 Score=61.85 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhC--C-CCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL--G-IKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~--G-i~v~liEr~~~~ 78 (716)
++|+|||||++|+.+|..|.++ . -.+.|||+++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999886 1 229999999865
No 337
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.89 E-value=0.065 Score=58.21 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
.+|+|||+|++|+-+|..|.+.|.+ |+|++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998753
No 338
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.85 E-value=0.038 Score=60.34 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 157 Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
+.+...+.+++.|+ +|+.++.|++++++ +| ++. +|+ .+|.|+.+|=|-|.+
T Consensus 211 l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~--~v--~~~---~g~---~~I~~~tvvWaaGv~ 261 (405)
T COG1252 211 LSKYAERALEKLGV-------------------EVLLGTPVTEVTPD--GV--TLK---DGE---EEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--cE--EEc---cCC---eeEecCEEEEcCCCc
Confidence 34445556677787 99999999999864 43 333 343 169999999999986
Q ss_pred -hhhhhhc
Q 005056 237 -STVRKLV 243 (716)
Q Consensus 237 -S~VR~~l 243 (716)
|++-+.+
T Consensus 262 a~~~~~~l 269 (405)
T COG1252 262 ASPLLKDL 269 (405)
T ss_pred CChhhhhc
Confidence 5555553
No 339
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.80 E-value=0.0079 Score=65.48 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS 79 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~~ 79 (716)
....|+|||||.+||++|..|-..| .+++|+|......
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 3458999999999999999999665 5899999887664
No 340
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.011 Score=62.43 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
..|.|||+||+|+.+|..|-++ +++|.|+||.+.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4899999999999999988774 7999999999876
No 341
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.54 E-value=0.11 Score=58.39 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999875
No 342
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.50 E-value=0.81 Score=50.56 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=34.0
Q ss_pred cceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCCh
Q 005056 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (716)
Q Consensus 188 ~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (716)
+.+|+++++|++|+.+++++++++. .+|+ ++.||.||.|--...
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH 254 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence 4589999999999999888776654 2342 578999999866553
No 343
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.49 E-value=0.011 Score=63.61 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=34.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..++|++|||+|.-||++|..|+|.|.+|+++||+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence 566999999999999999999999999999999994
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.35 E-value=0.15 Score=57.57 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=30.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899998764
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.25 E-value=0.14 Score=59.17 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 35899999999999999999999999999998753
No 346
>PRK12831 putative oxidoreductase; Provisional
Probab=94.98 E-value=0.22 Score=56.26 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999765
No 347
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.97 E-value=0.42 Score=53.11 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----CCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~----Gi~v~liEr~~~~ 78 (716)
.++=|||+|+++|++|.+|-|- |-++.|+|+.+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 5778999999999999999886 5689999998754
No 348
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.16 Score=55.28 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...+||+|||||=+|.-+|.+-+|.|-+.+|+-.+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 5679999999999999999999999999999987754
No 349
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.03 Score=66.14 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=33.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
..|.|||.||+||++|-.|-|.|+.|+|+||....
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 68999999999999999999999999999998865
No 350
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.37 E-value=0.35 Score=52.66 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=23.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----C--CCEEEE
Q 005056 44 VPVLIVGAGPVGLVLSILLTKL----G--IKCSVL 72 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~----G--i~v~li 72 (716)
.+|+|||||++|+-+|..|+++ | .+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4899999999999999999853 4 356665
No 351
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.07 E-value=0.46 Score=53.86 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcCC
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI 400 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~ 400 (716)
.+||.+||+++. | .-+..|+.++...|+.|...++|.
T Consensus 431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999972 1 135679999999999998888764
No 352
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.98 E-value=0.058 Score=60.92 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.|+|||.|++|+++|..|.++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988764
No 353
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=93.97 E-value=0.015 Score=56.55 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~~ 78 (716)
+.||+|||+|-+||++|+..+++ .++|.|||..-.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 47999999999999999999965 6899999987665
No 354
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.94 E-value=0.49 Score=51.61 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecC
Q 005056 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTD 233 (716)
Q Consensus 154 q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgAD 233 (716)
-..+...|..++++.|+ +|+++++|.++ ++++..+.+. ++. .+++||.||-|.
T Consensus 85 A~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlAt 137 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLAL 137 (376)
T ss_pred HHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEcC
Confidence 45677888899999988 99999999999 2334444432 221 268999999999
Q ss_pred CCCh
Q 005056 234 GAGS 237 (716)
Q Consensus 234 G~~S 237 (716)
|..|
T Consensus 138 GG~s 141 (376)
T TIGR03862 138 GGAS 141 (376)
T ss_pred CCcc
Confidence 9876
No 355
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.92 E-value=0.37 Score=56.91 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=30.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.-.|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999997 599998765
No 356
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.86 E-value=0.065 Score=51.00 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.|+|||..|.++|..|+++|.+|.|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999875
No 357
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.85 E-value=0.5 Score=56.88 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
-+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5899999999999999999999997 99998765
No 358
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.78 E-value=0.15 Score=58.56 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=29.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-..+|||||.-||=+|..|...|.++.|++-.+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence 457999999999999999999999999987443
No 359
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.66 E-value=0.073 Score=53.90 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=41.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC-------CCeeeeChhHHHHHHhhhch
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------PQAHFINNRYALVFRKLDGL 101 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~-------p~a~~i~~rtmeilr~l~Gl 101 (716)
+++|||+|..|.++|-.|.+.|..|+++|+++..... ..+...+.--.++|+++ |+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a-gi 64 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA-GI 64 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc-CC
Confidence 6899999999999999999999999999999765211 12233344444566666 55
No 360
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.62 E-value=0.086 Score=56.29 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
...+|+|||+|-.|.++|..|++.|.+|+++.|..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 33579999999999999999999999999998864
No 361
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.57 E-value=0.081 Score=58.62 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=30.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~ 79 (716)
..++||||+|-|..-..+|.+|++.|.+|+.+||++.-.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 467999999999999999999999999999999998654
No 362
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.42 E-value=0.075 Score=51.85 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.|.|||+|..|...|..++++|++|+|+|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999998653
No 363
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=0.081 Score=60.11 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..|+|||+|++|+.+|..|+++|.+|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999775
No 364
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.06 E-value=0.086 Score=51.65 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.|.|||.|-+||.+|..|+++|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 68999999999999999999999999999875
No 365
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.95 E-value=0.37 Score=52.92 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.....|++||+|-.|+-.|..|.-.+.+|++|++.+.+
T Consensus 211 ~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 211 QLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL 248 (478)
T ss_pred ccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence 33567999999999999999999999999999988754
No 366
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.79 E-value=2.2 Score=47.18 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred ccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEE
Q 005056 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (716)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VV 230 (716)
.++-.+|.+.|.+.+++.|+ +++.+++|+++..++++++.... +++. +.++++|.+|
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vV 315 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFV 315 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEE
Confidence 56677888999999999998 88999999999988887765332 2221 2378999999
Q ss_pred ecCCCC-hh
Q 005056 231 GTDGAG-ST 238 (716)
Q Consensus 231 gADG~~-S~ 238 (716)
-|.|++ |.
T Consensus 316 LAaGaw~S~ 324 (419)
T TIGR03378 316 LASGSFFSN 324 (419)
T ss_pred EccCCCcCH
Confidence 999999 75
No 367
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.74 E-value=0.13 Score=58.47 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC-CCCEEEECCCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~-Gi~v~liEr~~~~ 78 (716)
...++|.+|||||-+|.++|..|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999987 7999999999876
No 368
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.72 E-value=0.14 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
|+|+|+|-.|+..|..|++.|.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998765
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.15 Score=57.32 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=32.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..-+|+|+|+|.+|+.+|..|+++|.+|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34679999999999999999999999999999875
No 370
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.89 E-value=0.16 Score=54.01 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998864
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.86 E-value=0.2 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999864
No 372
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.70 E-value=0.2 Score=52.90 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998753
No 373
>PRK06370 mercuric reductase; Validated
Probab=91.45 E-value=0.22 Score=56.37 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCeeeeChhHHHHHHhhhchHHHHHhcCCCccccceeEEeec
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~p~a~~i~~rtmeilr~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (716)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. +..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~~--------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------RED--------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------ccC---------------------
Confidence 5899999999999999999999999999998765310 000
Q ss_pred CCCCceeeccCCCccccccccCCccccccChHHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEec
Q 005056 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (716)
Q Consensus 124 ~~g~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~ 203 (716)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 212 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~ 241 (463)
T PRK06370 212 -------------------------------EDVAAAVREILEREGI-------------------DVRLNAECIRVERD 241 (463)
T ss_pred -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence 0112234455566676 99999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 204 ~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
++++.+++... ++ ..++.+|.||-|-|..
T Consensus 242 ~~~~~v~~~~~-~~---~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 242 GDGIAVGLDCN-GG---APEITGSHILVAVGRV 270 (463)
T ss_pred CCEEEEEEEeC-CC---ceEEEeCEEEECcCCC
Confidence 77766655422 22 2368999999999864
No 374
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.44 E-value=0.67 Score=48.26 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=35.5
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC-CC-CEEEECCCCCCCCCCCe
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKAFSTHPQA 84 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~-Gi-~v~liEr~~~~~~~p~a 84 (716)
...++.|||||||-.|++.|..+.+. |- +|.|+|-....-.+|.-
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgf 82 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGF 82 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcce
Confidence 45679999999999999999999876 44 78889877665555543
No 375
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.32 E-value=0.23 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
.|.|||+|.-|...|..|++.|++|+++|+.+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 7999999999999999999999999999988653
No 376
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.25 E-value=3.7 Score=47.68 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCceeecccccccccccccccceEEeCcEEEEEEecC-CeEEE-EEEeccCCceeeEEEEecEEEec
Q 005056 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINV-IASFLKEGKCTERNIQCNILIGT 232 (716)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~g~~v~~i~~~~-~gv~v-~v~~~~~g~~~~~~i~ad~VVgA 232 (716)
..+...|.+.+.+.|+ +|+.++.++++..++ +.|.- .+....+|+ .+.|.|+-||-|
T Consensus 126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~--~~~i~AkaVVLA 184 (570)
T PRK05675 126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETGE--TVYIKSKATVLA 184 (570)
T ss_pred HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCCc--EEEEecCeEEEC
Confidence 5677888888887776 999999999998753 43332 222223453 468999999999
Q ss_pred CCCChhh
Q 005056 233 DGAGSTV 239 (716)
Q Consensus 233 DG~~S~V 239 (716)
.|..+.+
T Consensus 185 TGG~~~~ 191 (570)
T PRK05675 185 TGGAGRI 191 (570)
T ss_pred CCCcccc
Confidence 9998754
No 377
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.24 E-value=0.29 Score=48.75 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-.|+|||||.+|+.-+..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 489999999999999999999999999998653
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.08 E-value=0.29 Score=46.52 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=29.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE 73 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liE 73 (716)
..-.|+|||||.+|+..+..|.+.|.+|+||.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34689999999999999999999999999994
No 379
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.02 E-value=0.29 Score=45.29 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~ 80 (716)
++|+|+|+++..++..++..|++|+|+|-++..-+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccC
Confidence 58999999999999999999999999998876433
No 380
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.99 E-value=0.24 Score=44.10 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
|+|||.|..|..++-.|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 381
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.98 E-value=1.5 Score=51.82 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
.+|+|||||.+|+-+|..+.++|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 479999999999999999999997 6888887643
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.82 E-value=0.28 Score=51.68 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999997753
No 383
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.70 E-value=0.26 Score=52.17 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|+|||+|-.|.++|..|++.|.+|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999864
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.69 E-value=0.29 Score=51.91 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr 74 (716)
+|+|||+|..|.++|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 385
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.50 E-value=2.3 Score=48.15 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
.-.|+|||+|.+|+-+|..+.+.|. +|+|++|++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 3589999999999999999999996 6999988753
No 386
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.45 E-value=0.39 Score=47.69 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
..+..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 345789999999999999999999999 599999873
No 387
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.36 E-value=0.38 Score=49.84 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=32.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
.+..|+|||+|-+|..+|..|++.|+ +++|+|.+.-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45789999999999999999999997 7999997653
No 388
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.35 E-value=0.29 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=31.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-.|+|+|+|+.|+.+|..|+..|.+|+++|+++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999998753
No 389
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.29 E-value=0.42 Score=51.02 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.0
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~ 77 (716)
+....+|.|||+|-+|.++|+.|+..|+ .++|+|.+..
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3455799999999999999999999998 7999998653
No 390
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.24 E-value=0.3 Score=51.50 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999998864
No 391
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.20 E-value=0.34 Score=46.58 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=30.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
....|+|+|+|.+|+.++..|...|++++++|.++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34789999999999999999999999999999764
No 392
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.16 E-value=0.3 Score=45.03 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=30.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
+..|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999999 6999998753
No 393
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.02 E-value=0.3 Score=51.48 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998763
No 394
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.02 E-value=0.32 Score=53.19 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..+|+|||+|.+|+.+|..|.+.|.+|+++++++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999864
No 395
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.88 E-value=2.4 Score=52.07 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
-+|+|||||.+|+=+|..+.++|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 579999999999999999999999999998774
No 396
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.88 E-value=1.9 Score=46.83 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.2
Q ss_pred ceEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 189 ~~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
++++.++.|..+.... +++... +|+ ..+|..-++|.|.|..
T Consensus 288 I~~~~~t~Vk~V~~~~----I~~~~~-~g~--~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKT----IHAKTK-DGE--IEEIPYGLLVWATGNG 328 (491)
T ss_pred ceeecccEEEeecCcE----EEEEcC-CCc--eeeecceEEEecCCCC
Confidence 3899999999887542 333322 554 3578899999999975
No 397
>PRK06116 glutathione reductase; Validated
Probab=89.84 E-value=0.37 Score=54.23 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35899999999999999999999999999998764
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.84 E-value=0.37 Score=50.59 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998764
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.79 E-value=0.48 Score=47.11 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=30.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
...|+|||||-+|...+..|.+.|.+++|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999753
No 400
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.78 E-value=0.37 Score=51.27 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~ 77 (716)
+|.|||+|.+|+++|+.|+++|+ .++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999995 7999998754
No 401
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.76 E-value=0.31 Score=55.20 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
....|+|+|+|++||.++..+...|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356899999999999999999999999999998753
No 402
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.75 E-value=0.44 Score=50.88 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998764
No 403
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.72 E-value=1.3 Score=48.85 Aligned_cols=40 Identities=20% Similarity=0.445 Sum_probs=31.7
Q ss_pred eEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhh
Q 005056 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (716)
Q Consensus 190 ~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (716)
+++++++++.++.....+ .+. +|+ ++..+++|-|.|. |+.
T Consensus 143 e~~~~t~v~~~D~~~K~l--~~~---~Ge----~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKTL--VLG---NGE----TLKYSKLIIATGS-SAK 182 (478)
T ss_pred eEEEcceeEEeeccccEE--EeC---CCc----eeecceEEEeecC-ccc
Confidence 999999999999877653 332 553 8999999999998 443
No 404
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.60 E-value=0.37 Score=51.87 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+|.|||.|-+||+.|..|++.|++|+.+|..+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999998864
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.48 E-value=0.24 Score=43.47 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=31.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
....|||||||.+|..-+..|.+.|-+++|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 34689999999999999999999999999998764
No 406
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=89.37 E-value=2.4 Score=52.07 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC-CC-CEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~-Gi-~v~liEr~~~ 77 (716)
.-+|+|||||.+|+-+|..+.+. |. +|+|++|+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 45899999999999999998886 86 7999998753
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.29 E-value=0.38 Score=53.48 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 408
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.29 E-value=0.5 Score=44.05 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=30.1
Q ss_pred CCEEEECC-CHHHHHHHHHHHhCCC--CEEEECCCCC
Q 005056 44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGa-GpaGLt~Al~Lar~Gi--~v~liEr~~~ 77 (716)
++|.|||+ |.+|.++|+.|...++ +++|+|++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 37999999 9999999999999986 6899998853
No 409
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.17 E-value=0.51 Score=50.16 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.+|.|||+|-+|+..|..|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 410
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.16 E-value=0.51 Score=50.88 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=32.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
..+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 445789999999999999999999999 899999886
No 411
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=0.38 Score=50.35 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=32.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..++|.+|||||-.||++|-..+..|-+|.++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 34599999999999999999999999999999954
No 412
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.81 E-value=0.63 Score=46.24 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=32.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
..+..|+|||.|-.|...|..|++.|+ +++|+|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 455899999999999999999999999 799999775
No 413
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.67 E-value=0.52 Score=50.86 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
+|.|||+|-.|...|..|++.|++|++++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999974
No 414
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.43 E-value=0.73 Score=42.55 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
....|+|||+|-+|-+.+..|..+|++ ++|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 346899999999999999999999998 99998763
No 415
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.35 E-value=0.63 Score=44.78 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.3
Q ss_pred CccCCEEEECCCH-HHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGp-aGLt~Al~Lar~Gi~v~liEr~ 75 (716)
-...+|+|||+|- +|..+|..|.++|.+++++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3457999999996 7999999999999999999986
No 416
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.07 E-value=0.56 Score=50.90 Aligned_cols=32 Identities=38% Similarity=0.674 Sum_probs=27.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 59999999999999988889996 566667765
No 417
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.00 E-value=0.74 Score=49.48 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=33.7
Q ss_pred eEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCC--ChhhhhhcC
Q 005056 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVG 244 (716)
Q Consensus 190 ~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~--~S~VR~~lg 244 (716)
+|+-+..|.++......+.+.+. +|. +++.|+||.|-|- ||-+.+.-|
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhccccc
Confidence 77777777777776666666665 664 7899999999995 454444333
No 418
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=87.87 E-value=6.7 Score=42.82 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred eEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChh
Q 005056 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (716)
Q Consensus 190 ~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (716)
.-.+..+++.++.+...|.+..... ++...+..|..||||.|-|+...
T Consensus 124 ~~y~eAec~~iDp~~k~V~~~s~t~-~~~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 124 VKYLEAECTKIDPDNKKVHCRSLTA-DSSDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred ceEEecccEeecccccEEEEeeecc-CCCcceeeecccEEEEeccCCCC
Confidence 3457788888888888776665533 33234678999999999999864
No 419
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.79 E-value=0.81 Score=48.98 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~~ 78 (716)
.+|.|||+|-+|.++|..|+..|+ +++|+|.++..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 689999999999999999999996 99999987754
No 420
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.76 E-value=0.73 Score=47.14 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=31.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
-....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 445799999999999999999999998 677888765
No 421
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.73 E-value=0.71 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=32.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
..+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 345789999999999999999999999 899999864
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.73 E-value=0.74 Score=51.76 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...|+|+|.|.+|+++|.+|+++|.+|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999997764
No 423
>PLN02602 lactate dehydrogenase
Probab=87.72 E-value=0.87 Score=49.24 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~ 76 (716)
.+|.|||+|-+|.++|+.|...|+ .++|||.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999999887 589999865
No 424
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.70 E-value=0.66 Score=49.40 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3699999999999999999999999999997653
No 425
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.69 E-value=0.48 Score=46.64 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=29.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...+|+|||+|.++.-+|..|++.|-+|+++=|++.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 347899999999999999999999999999988763
No 426
>PRK04148 hypothetical protein; Provisional
Probab=87.49 E-value=0.47 Score=43.57 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998764
No 427
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.14 E-value=0.69 Score=49.62 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.|||+|-.|.++|..|++.|.+|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 428
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.99 E-value=0.71 Score=50.79 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=32.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-.|+|+|.|++|+.+|..|+..|.+|+++|+++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45899999999999999999999999999998764
No 429
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.90 E-value=0.98 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=32.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
..+..|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3457899999999999999999999995 99999874
No 430
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.78 E-value=0.85 Score=51.23 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
-.|+|+|+|.+|+++|..|++.|.+|++.|++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 4689999999999999999999999999997753
No 431
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.77 E-value=0.96 Score=43.79 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
.|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999875
No 432
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.76 E-value=0.81 Score=48.67 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
.+|.|||+|.+|.++|..|+..|+ +++|+|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999999654
No 433
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.72 E-value=0.79 Score=48.41 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 599999999999999999999999999998764
No 434
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.71 E-value=0.9 Score=46.63 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.+..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45799999999999999999999999 788898764
No 435
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.62 E-value=0.92 Score=48.34 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~ 76 (716)
+.+|.|||+|-+|.++|+.|...|+ .++|||.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999987 689999875
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=86.35 E-value=0.67 Score=51.51 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+|.|||.|-.|+.+|..|++.|++|+++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998764
No 437
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=86.28 E-value=0.88 Score=46.67 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
....++|+|||+.+..+|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 447899999999999999999999999999997765
No 438
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.09 E-value=0.94 Score=51.55 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=29.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..|+|+|.|++|++++.+|.++|.+|++.|++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999965
No 439
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.98 E-value=0.75 Score=51.98 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998753
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.86 E-value=1.1 Score=45.45 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=31.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
..+..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 345799999999999999999999999 788888764
No 441
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.82 E-value=0.5 Score=43.13 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..+.+|-|||+|-+|-++|..|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 44579999999999999999999999998777643
No 442
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.71 E-value=0.85 Score=48.48 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC--CEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~ 76 (716)
.+|.|||+|..|.++|..|.+.|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 788998764
No 443
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.66 E-value=6.5 Score=42.71 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=39.9
Q ss_pred ccceEEeCcEEEEEEecCCe-EEEEEEeccCCceeeEEEEecEEEecCCCC
Q 005056 187 QGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAG 236 (716)
Q Consensus 187 ~~~~v~~g~~v~~i~~~~~g-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (716)
+.+.++-+++|++++..++| +.+++.....++ .++++.|.||.|.|-+
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~--~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGE--LETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCC--ceEEEeeEEEEecccc
Confidence 34688999999999998877 888887655554 5789999999999987
No 444
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.61 E-value=0.96 Score=48.56 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=30.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.|.|||+|..|...|..|++.|++|++++|++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999865
No 445
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.51 E-value=0.98 Score=50.01 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=32.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...|+|+|.|+.|..+|..|...|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 45799999999999999999999999999998764
No 446
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.44 E-value=0.78 Score=48.07 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.|||.|..|.++|..|.++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.36 E-value=1.2 Score=45.15 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.+..|+|||.|-+|..+|..|++.|+ +.+|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35789999999999999999999999 788898765
No 448
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.31 E-value=1.4 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
.|+|||+|-.|...|..|++.|+ +++|+|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999999 6999997753
No 449
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=85.25 E-value=7.2 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=27.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~ 75 (716)
.-+|+|||||.+|+=+|..+.+.|.+ |+++.|+
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35899999999999999999999985 6666654
No 450
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.24 E-value=1.2 Score=47.40 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.+|.|||+|-.|.++|..|++.|++|.+++|+..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999999764
No 451
>PRK08328 hypothetical protein; Provisional
Probab=85.24 E-value=1.3 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=30.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
.+..|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999999 578887664
No 452
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.09 E-value=0.93 Score=47.94 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
...|+|+|.|.+|..++..|.+.|.+|++++|++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999885
No 453
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.00 E-value=0.91 Score=52.62 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+-+|+|||+|..|..+|..|.++|++++++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46899999999999999999999999999999864
No 454
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.92 E-value=1.2 Score=46.96 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 40 ~~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
....+|.+|||||-.|++.|..-+.+|.++.|+|..-
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 3457999999999999999999999999999999763
No 455
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=1.3 Score=47.21 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~~~~ 81 (716)
.+||+|+|-|++=..++..|++.|-+|+.|||++.-...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 699999999999999999999999999999999876433
No 456
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.89 E-value=0.94 Score=48.38 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.|||+|..|..+|..|++.|++|.+++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 457
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.72 E-value=0.95 Score=51.05 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~--Gi~v~liEr~~~ 77 (716)
+|.|||.|-+|+.+|..|+++ |++|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 599999999999999999988 588999998764
No 458
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.70 E-value=0.96 Score=50.84 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+|+|||+|..|..+|..|.+.|++++++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999764
No 459
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.64 E-value=1.1 Score=47.61 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~ 77 (716)
+|.|||+|-+|.++|..|+..|+ .++|+|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999995 7999999764
No 460
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.27 E-value=1.1 Score=50.44 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|+|+|.|.+|+++|.+|.+.|++|.+.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3799999999999999999999999999998763
No 461
>PRK08223 hypothetical protein; Validated
Probab=84.18 E-value=1.4 Score=45.94 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=31.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
-.+..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 455899999999999999999999999 688888665
No 462
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.08 E-value=1 Score=49.52 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
+|.|||.|-+|+.+|..|+. |++|+++|+++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 58999999999999999985 9999999998754
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.04 E-value=1.1 Score=47.42 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 46 VlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
|.|||+|-+|..+|..|+.+|+ +++|+|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999884
No 464
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.67 E-value=1.4 Score=46.37 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=30.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
...|+|+|+|-+|.+.|..|++.|+ +++|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999998 699999874
No 465
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.65 E-value=1.3 Score=50.57 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.|.|||+|..|...|..|+++|++|+|+|+++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999998654
No 466
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.60 E-value=1.3 Score=50.06 Aligned_cols=34 Identities=18% Similarity=-0.069 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|+|+|.|-+|.++|.+|.++|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4799999999999999999999999999997654
No 467
>PRK13984 putative oxidoreductase; Provisional
Probab=83.53 E-value=11 Score=44.13 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=28.2
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHcC
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g 399 (716)
.+||.+||+++.. .+-.|+.++...|..|...|.+
T Consensus 569 ~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 569 PWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999998632 3677999999999988877654
No 468
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.44 E-value=1.6 Score=43.24 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=31.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
..+..|+|||+|..|...|..|++.|+. ++|+|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3457899999999999999999999994 88888764
No 469
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.43 E-value=1.5 Score=43.33 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
.+..|+|||+|-.|...|-.|++.|+. ++|+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457999999999999999999999995 88998775
No 470
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.34 E-value=1.5 Score=46.83 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=32.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~~ 78 (716)
.+.+|.|||||-+|.++|+.|+..| .+++|+|.+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV 41 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence 3468999999999999999999999 489999987643
No 471
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.27 E-value=1.6 Score=42.86 Aligned_cols=33 Identities=24% Similarity=0.569 Sum_probs=30.0
Q ss_pred cCCEEEECC-CHHHHHHHHHHHhCCCCEEEECCC
Q 005056 43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 43 ~~dVlIVGa-GpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
...|+|+|| |.+|..+|..|+++|.+++++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999876
No 472
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=83.26 E-value=4.7 Score=44.18 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.1
Q ss_pred eEEeCcEEEEEEecCCeEEEEEEeccCCceeeEEEEecEEEecCCCChhh
Q 005056 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (716)
Q Consensus 190 ~v~~g~~v~~i~~~~~gv~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (716)
+++.+++++++......+. +. ++ .+..|++|-|.|++-..
T Consensus 69 ~~~~~~~v~~id~~~~~v~--~~---~g-----~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVL--LD---DG-----EIEYDYLVLATGARPRP 108 (415)
T ss_pred EEeeCCEEEEecCCCCEEE--EC---CC-----cccccEEEEcCCCcccC
Confidence 8999999999998777643 22 33 57899999999987543
No 473
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.04 E-value=1.4 Score=48.92 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=33.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~~ 78 (716)
...|+|+|-|-+|+++|.+|.++|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 468999999999999999999999999999988766
No 474
>PLN02976 amine oxidase
Probab=82.91 E-value=73 Score=40.90 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=28.6
Q ss_pred CeEEEEccCCccCCCCCCccchhhHhHHHHHHHHHHHHHc
Q 005056 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398 (716)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~ 398 (716)
+|||++|+|.+...|-.-+| |++.+...|..|...+.
T Consensus 1151 gRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1151 NCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHH
Confidence 67999999998877655444 78888888877777764
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.79 E-value=1.6 Score=46.32 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEECCCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi--~v~liEr~~~ 77 (716)
+|.|||+|-+|.++|+.|...|+ +.+|||.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999987 6999998653
No 476
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.74 E-value=1.7 Score=43.82 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=30.7
Q ss_pred ccCCEEEECC-CHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGa-GpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
....|+|+|| |..|..+|..|+++|.+|+++.|++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 3467999986 9999999999999999999998864
No 477
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.66 E-value=1.6 Score=49.90 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|.-|.-.|..|++.|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998864
No 478
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.65 E-value=1.7 Score=44.00 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC---EEEECCCC
Q 005056 42 AVVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGaGpaGLt~Al~Lar~Gi~---v~liEr~~ 76 (716)
....|+|+|+|-+|...|..|.+.|++ +.|++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 346899999999999999999999996 99999984
No 479
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.49 E-value=2.1 Score=43.81 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.4
Q ss_pred ccCCEEEECC-CHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 42 ~~~dVlIVGa-GpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..-.|+|.|| |-.|..+|..|++.|.+|+++.|+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3457999997 8999999999999999999998753
No 480
>PLN02494 adenosylhomocysteinase
Probab=82.46 E-value=1.6 Score=48.67 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
.-.|+|+|.|++|..+|..|...|.+|+++|+++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 35799999999999999999999999999998764
No 481
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.38 E-value=1.5 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=32.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+-.|+|+|.|..|-.+|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4689999999999999999999999999999886
No 482
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.35 E-value=2.1 Score=42.52 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~ 75 (716)
..|+|+|.|-+|..+|..|.+.|.+|+++|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999876
No 483
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.27 E-value=1.7 Score=49.04 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
...|+|+|.|.+|.++|.+|.+ |.+|++.|.++
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 3579999999999999999995 99999999554
No 484
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.23 E-value=1.6 Score=43.92 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.0
Q ss_pred CEEEEC-CCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVG-aGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+|.||| +|..|.++|..|++.|.+|+++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998764
No 485
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.20 E-value=1.5 Score=41.64 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..|+|+|-|.+|..+|..|+..|.+|+|.|.+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999986
No 486
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.12 E-value=1.8 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
-.+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 445789999999999999999999998 788898775
No 487
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=81.94 E-value=1.6 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~~ 77 (716)
+..|+|||.|=+|..++-+|+|.|+ +.+|||...-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 4789999999999999999999999 7999998864
No 488
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.80 E-value=1.6 Score=48.72 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|+|||-|-+|+++|.+|.++|.+|.++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997654
No 489
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.78 E-value=1.7 Score=47.35 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC-CCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~G-i~v~liEr~~~ 77 (716)
.+|||+|+|-+|.+.|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999853
No 490
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.67 E-value=2 Score=43.92 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=30.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-----------CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-----------KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-----------~v~liEr~~ 76 (716)
.....|+|||+|-.|...+-.|++.|+ +++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 355899999999999999999999752 778888664
No 491
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.37 E-value=1.5 Score=49.22 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=32.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
...|+|+|+|..|..+|..|.++|++++++|+++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 35799999999999999999999999999998864
No 492
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.19 E-value=1.6 Score=45.90 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=31.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
...|+|+|.|-+|..+|..|+..|.+|++++|++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999875
No 493
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.15 E-value=1.6 Score=49.82 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
..|.|||+|.-|.-.|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998865
No 494
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.91 E-value=2.8 Score=44.11 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.8
Q ss_pred CccCCEEEECC-CHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGa-GpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
+....|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34456999997 8999999999999999999998863
No 495
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.64 E-value=2 Score=46.65 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=31.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi-~v~liEr~~ 76 (716)
-.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 345799999999999999999999999 788888774
No 496
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.64 E-value=2.1 Score=48.13 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.3
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 41 ~~~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
..+--|+|||.|-+|+++|.+|.++|++|.+.|.+.
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 344679999999999999999999999999999765
No 497
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.50 E-value=1.6 Score=51.14 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=32.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEECCCCC
Q 005056 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (716)
Q Consensus 43 ~~dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~~ 77 (716)
+-+|+|+|.|..|-..|..|.++|++++++|+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 46899999999999999999999999999999863
No 498
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.39 E-value=2.2 Score=44.53 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEECCCC
Q 005056 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (716)
Q Consensus 44 ~dVlIVGaGpaGLt~Al~Lar~Gi~-v~liEr~~ 76 (716)
-.|+|+|+|++|+.++..++.+|.+ |+++++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4799999999999999999899997 77776543
No 499
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.31 E-value=2.3 Score=43.15 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=30.3
Q ss_pred cCCEEEECC-CHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 43 ~~dVlIVGa-GpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.-.++|+|| |..|..+|..|+++|.+|++++|+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357999998 9999999999999999999998753
No 500
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=80.19 E-value=1.8 Score=45.94 Aligned_cols=32 Identities=34% Similarity=0.648 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEECCCC
Q 005056 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (716)
Q Consensus 45 dVlIVGaGpaGLt~Al~Lar~Gi~v~liEr~~ 76 (716)
.|+|+|+|-.|...|..|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999997777776654
Done!