BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005057
(716 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RX22|MIP1_ARATH MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1
SV=1
Length = 711
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/732 (58%), Positives = 534/732 (72%), Gaps = 37/732 (5%)
Query: 1 MGCTVREKHIRTTRRTRSVKPEFDP-CCYLDKASISKSILESGLKPLSYHLGLNDP-SHN 58
MGCTVREKH++ TRR ++ DP C+++K ++S+SI+E+ L YH GL D S N
Sbjct: 1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGSVN 56
Query: 59 SNP---NADDHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGHC 115
N N +++ W YCTEE LEEILLK+LEFLYN+A+SKL+ LGY+E VALKA+L NGHC
Sbjct: 57 LNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAVLSNGHC 116
Query: 116 YGGMDVLTNILHNSLAYLNSSSTSGGNGNTSSVNSED-SEPVFNDLRQLEEYSLAGMVCL 174
YG +DVLTNI++NSL+YLNS S+ N ED +E F DLR LEEYSLAGM+ L
Sbjct: 117 YGELDVLTNIVNNSLSYLNSGGGG----GGSNGNGEDRTETGFTDLRDLEEYSLAGMIYL 172
Query: 175 LQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIPGT-NVCGGTISNNVDSVSNGG---VNG 230
LQQV+P+LSKGDAMWCLLMS+LHVGRAS++++P + C +NV+ V GG + G
Sbjct: 173 LQQVKPNLSKGDAMWCLLMSELHVGRASTLDVPTNRSSCCTKEDSNVEDVGTGGTLDIAG 232
Query: 231 VVAPALCRFHGGWGFGSGGNAEFSVNGFFSYSAEMTLPRDIECPKRFNLSPSMKSLLKRN 290
+APALCRFHGGWGFG+GG EFS NGF AE+ L R+I+CPKRFNLSPSMKSLLKRN
Sbjct: 233 FMAPALCRFHGGWGFGNGGGPEFSGNGFSMKGAELKLQREIDCPKRFNLSPSMKSLLKRN 292
Query: 291 VAMFAAGFRASSKQGHSQPQACVS-VMAGRDASLVAS-GAEVTVENCEDSKNLKDPNGVD 348
VA FAAG+RAS KQ Q + A D ++V S G + E+S V
Sbjct: 293 VAAFAAGYRASMKQKQIQSSDTIGDSKACNDPAIVKSCGQQPRKSGSEES--------VS 344
Query: 349 SVLSKMRDLNIDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLS 408
+VL K RDLN+D+NLE++ D KD ++V +LHQ+KD E++VKERKEWA + AMQAA+K+S
Sbjct: 345 TVLEKFRDLNLDDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVS 404
Query: 409 NDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLET 468
+L ELK L ERE Q LKKGKQ +E++T KR ++ E LRKA Q DRAN VR+LE
Sbjct: 405 EELAELKTLSSEREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLEN 464
Query: 469 ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528
+NAEIRAE E SKLSA+ES+ C+E +K+EKKCLK+L+AWEKQ KLQ+EI EKEKIK
Sbjct: 465 QNAEIRAEREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKA 524
Query: 529 LQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEI 588
L + LA+I + +KE E+KWRQEQKAKE LAQ+EEE+RSKE AE NKRKLE LRLKIE+
Sbjct: 525 LYKTLAQITEYEKEIEAKWRQEQKAKEEALAQMEEEQRSKEAAEGHNKRKLETLRLKIEL 584
Query: 589 DFQRHKDDLQRLEQEFSRLKASAESNEQNHQSNTLPPGKLERAKPQGETIARLLHELDEL 648
DFQRHKDD QRLEQE RLKAS++S+ + +N P K QGE IA+LL E+D+L
Sbjct: 585 DFQRHKDDHQRLEQELGRLKASSDSDSSHISNNAWKP-----KKSQGENIAKLLEEIDKL 639
Query: 649 EDSSEKETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK----GKATCPCCRVP 704
E S + E N DR+CIIC+KDEVS+VFLPCAHQV+C SCSD++ K TCPCCR
Sbjct: 640 EGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGL 699
Query: 705 IEQRIRVFGASS 716
++QRIR+FGA+S
Sbjct: 700 VQQRIRIFGATS 711
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 213/364 (58%), Gaps = 31/364 (8%)
Query: 366 ITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQ 425
I +++DE+++ ++ ++KDL++++++ +WA+QK QA +L D ELK LR E+EE +
Sbjct: 459 IPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRKEKEEAE 518
Query: 426 RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485
+K KQ LE+ T+KR SEME AL A+ Q++R N +RRLE E + ++ E EA+ + A+
Sbjct: 519 EFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREAANIRAS 578
Query: 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETES 545
ES +C E +R ++ LK +WE QK LQEE+ ++++K+ LQQ +A+ + Q + E+
Sbjct: 579 ESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQIEA 638
Query: 546 KWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFS 605
W+QE+ A L AQ ++ + E K + E ++ K E D + + ++++RL+ E S
Sbjct: 639 TWKQEKSATGKLTAQAAALKKERGKLEELGKAEEERIKTKAENDVKYYIENIKRLDTEIS 698
Query: 606 RLKASAES------------------NEQNHQSNTLPPGKLERAKPQGETIARLLHELDE 647
+LK ++S + NH +NT K A++ E
Sbjct: 699 KLKLKSDSLKIAALKKGIDGNNDGNKSGMNHTTNT---------KANSMASAKVW----E 745
Query: 648 LEDSSEKETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707
+E + +R+C++CL +E+S++FLPCAHQVLC+ C+ + K+ CP CR I++
Sbjct: 746 NNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQR 805
Query: 708 RIRV 711
RI+
Sbjct: 806 RIQA 809
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 63 ADDHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGHCYGGMDVL 122
+D GW LE +L NL L+ A+++++ GY EDV LKAI + GG D++
Sbjct: 81 SDSVGWDDPFACHLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLV 140
Query: 123 TNILHNSLAYLNSSSTSGGNGNTSSVNSEDSEPVFNDLRQLEEYSLAGMVCLLQQVRPHL 182
+NI++++L++L S G+ + VF DL+QL YSL + L+++VRP L
Sbjct: 141 SNIVNDTLSFLKSGKKVAGSRDY----------VFEDLQQLVAYSLVEKISLVREVRPSL 190
Query: 183 SKGDAMWCLLMSDLHVGRASSIEIPG 208
S +AMW LL+ DL+V +A ++ G
Sbjct: 191 STDEAMWRLLICDLNVLKAFEVDADG 216
>sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana
GN=RF4 PE=3 SV=1
Length = 823
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/351 (35%), Positives = 206/351 (58%), Gaps = 17/351 (4%)
Query: 366 ITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQ 425
+ D+KDE+++ ++ ++ DL+ +++ +WA+QK +A +L D ELK LR EREE +
Sbjct: 489 VPRDKKDELILKLVPRVNDLQNELQVWTDWANQKVKEATGRLLKDQPELKALRKEREEAE 548
Query: 426 RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485
+ KK KQ LE+ T KRLSEM+ AL+ A+ Q+++A RLE E + ++ EMEA+K+ A
Sbjct: 549 QYKKEKQLLEENTRKRLSEMDFALKNATSQLEKAFNTAHRLELEQSILKKEMEAAKIKAV 608
Query: 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETES 545
ES + E +R ++ LK + +WE QK LQEE+ ++EK+ LQ+ + + + Q + E+
Sbjct: 609 ESAESFREAKERGERSLKDIHSWEGQKIMLQEELKGQREKVTVLQKEVTKAKNRQNQIEA 668
Query: 546 KWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFS 605
+QE+ AK L AQ R+ + EA K + E ++ K E D + + D+++RLE+E S
Sbjct: 669 ALKQERTAKGKLSAQASLIRKETKELEALGKVEEERIKGKAETDVKYYIDNIKRLEREIS 728
Query: 606 RLKASAESNEQNHQSNTLPPGKLERAKPQGETIARLLHELDELEDSSEKETNCDRDCIIC 665
LK ++ + + L G E + E++ + +R+C++C
Sbjct: 729 ELKLKSDYS----RIIALKKGSSESKATKRESLGM-------------PKVKRERECVMC 771
Query: 666 LKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGASS 716
L +E+S++FLPCAHQVLC C+ + K+G CP CR I +RI+ A S
Sbjct: 772 LSEEMSVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQARFARS 822
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 87 LYNEAISKLVALGYDEDVALKAILKNGHCYGGMDVLTNILHNSLAYLNSSSTSGGNGNTS 146
L+ + + +L+ LGY +D LKA+ + GG ++L+NI++N+L+ L + G+G+
Sbjct: 108 LFLDTMKQLIDLGYTDDEVLKAVSRCRLYCGGNNLLSNIVNNTLSALKTGDEGAGSGDY- 166
Query: 147 SVNSEDSEPVFNDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEI 206
VF DL+QL Y+L M+ L+++VRP LS +AMW LLM DL+V +A E
Sbjct: 167 ---------VFEDLQQLVSYTLVEMISLIKEVRPSLSTVEAMWRLLMCDLNVLQAFEAEG 217
Query: 207 PG 208
G
Sbjct: 218 DG 219
>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
Length = 943
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 640 RLLHELDELEDSSEKETNCDRD-CIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATC 698
R L+ L LE EK+ D++ C+IC + +IV LPC H LC+ C K C
Sbjct: 876 RYLNRLVSLE--KEKDQLKDQNSCVICASNPPNIVLLPCRHSSLCSDCCSKLTK-----C 928
Query: 699 PCCRVPIEQRIRVF 712
P CR IE +I ++
Sbjct: 929 PICRSHIENKISIY 942
>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2
SV=1
Length = 727
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 661 DCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGAS 715
+C++CL+ E +VFL C H C + TCP CR I QR+R++ +S
Sbjct: 678 ECVVCLEREAQMVFLTCGH-----VCCCQQCCQPLRTCPLCRQEISQRLRIYHSS 727
>sp|Q5RD60|CACO1_PONAB Calcium-binding and coiled-coil domain-containing protein 1
OS=Pongo abelii GN=CALCOCO1 PE=2 SV=1
Length = 691
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 132/274 (48%), Gaps = 36/274 (13%)
Query: 348 DSVLSKMRDLN-IDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARK 406
+ VL+K +L+ + + ++ +T +Q+ +L Q+K+++ KE+ E Q A Q +
Sbjct: 242 EKVLTKEVELDRLRDTVKALTREQE-----KLLGQLKEVQAD-KEQSEAELQVAQQENHR 295
Query: 407 LSNDLTELKMLRMERE-ETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAA 462
L+ DL E K + E+ + QRLK ++DT +R++E+E + G + A ++
Sbjct: 296 LNLDLKEAKSWQKEQSAQAQRLKDKVAQMKDTLGQAQQRVAELEPLKEQLRGAQELATSS 355
Query: 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAK------------REKKCLKRLLAWEK 510
++ E+ + A + AE + LEVA+ +E+KC W K
Sbjct: 356 QQKATLLGEELASAAAARDRTIAELHRSRLEVAEVNGRLAELGLHLKEEKC-----QWSK 410
Query: 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEG 570
++A L + + EK+KI +L + R+ E ++E+ + ++ E+ S
Sbjct: 411 ERAGLLQSVEAEKDKILKLSAEILRL-------EKAVQEERTQNHVFKTELAREKDSSLV 463
Query: 571 AEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEF 604
+ +KR+L LR + + Q+ K+ LQ +QE
Sbjct: 464 QLSESKRELTELRSALRV-LQKEKEQLQEEKQEL 496
>sp|Q9P1Z2|CACO1_HUMAN Calcium-binding and coiled-coil domain-containing protein 1 OS=Homo
sapiens GN=CALCOCO1 PE=1 SV=2
Length = 691
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 132/274 (48%), Gaps = 36/274 (13%)
Query: 348 DSVLSKMRDLN-IDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARK 406
+ VL+K +L+ + + ++ +T +Q+ +L Q+K+++ KE+ E Q A Q
Sbjct: 242 EKVLTKEVELDRLRDTVKALTREQE-----KLLGQLKEVQAD-KEQSEAELQVAQQENHH 295
Query: 407 LSNDLTELKMLRMERE-ETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAA 462
L+ DL E K + E+ + QRLK ++DT +R++E+E + G + A ++
Sbjct: 296 LNLDLKEAKSWQEEQSAQAQRLKDKVAQMKDTLGQAQQRVAELEPLKEQLRGAQELAASS 355
Query: 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAK------------REKKCLKRLLAWEK 510
++ E+ + A + AE + LEVA+ +E+KC W K
Sbjct: 356 QQKATLLGEELASAAAARDRTIAELHRSRLEVAEVNGRLAELGLHLKEEKC-----QWSK 410
Query: 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEG 570
++A L + + EK+KI +L + R+ E ++E+ ++ ++ E+ S
Sbjct: 411 ERAGLLQSVEAEKDKILKLSAEILRL-------EKAVQEERTQNQVFKTELAREKDSSLV 463
Query: 571 AEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEF 604
+ +KR+L LR + + Q+ K+ LQ +QE
Sbjct: 464 QLSESKRELTELRSALRV-LQKEKEQLQEEKQEL 496
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 28/243 (11%)
Query: 471 AEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKI---- 526
E+ E +AS SA++ +V + R+L + Q + E + N K++
Sbjct: 228 TEVHHEQKASNSSASQRSLQMFKVT------MSRILRLKIQMQEKHEAVMNVKKQTQKGN 281
Query: 527 -KELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLK 585
K++ Q +Q Q + ++ Q+Q E L +EE + +G E K L+ +
Sbjct: 282 SKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEK--DLKQQ 339
Query: 586 IEIDFQRHKDDLQRLEQEFSRLKASAESNEQNHQSNTLPPGKLERAKPQGETIARLLHEL 645
+ Q H L +E +R K E+ Q ++ L K E+ K Q + L H
Sbjct: 340 LAQALQEH----WALMEELNRSKKDFEAIIQ-AKNKELEQTKEEKEKMQAQKEEVLSHMN 394
Query: 646 DELEDSSEKETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705
D LE+ + CIIC + + V L CAH C+ C + + K+ K CP CR I
Sbjct: 395 DVLEN--------ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKR-KIECPICRKDI 444
Query: 706 EQR 708
+ +
Sbjct: 445 KSK 447
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 34/275 (12%)
Query: 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK 500
+L+ E +++ V+ A V L +R + +AS SA++S +V
Sbjct: 206 KLTSFEPSVKTTGAHVNPGPAKVIEL------LRKKKKASNPSASQSSLELFKVT----- 254
Query: 501 CLKRLLAWEKQKAKLQEEIANEKEKIKE-LQQCLARIQQDQKETESKWRQEQKAKELLLA 559
+ R+L + Q + Q + N K++ K+ + + +++Q+ ++ +S+ EQ ++ +
Sbjct: 255 -MSRILMLKTQMQEKQVAVLNVKKQTKKGSSKKIVKMEQELQDLQSQLCAEQAQQQARVE 313
Query: 560 QVE----EERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKASAESNE 615
Q+E EE++ EG E + +L + + + L +E +R K + E+
Sbjct: 314 QLEKTIQEEQQHLEGLEKEEGEEDLKQQLAQAL------QEYRSLVEELNRSKKNFEAII 367
Query: 616 QNHQSNTLPPGKLERAKPQGETIARLLHELDELEDSSEKETNCDRDCIICLKDEVSIVFL 675
Q + L K E+ K Q + L H D LE+ + CIIC + V V L
Sbjct: 368 Q-AKDKELEQTKEEKEKVQAQKEEVLSHMNDVLEN--------ELQCIICSEYFVEAVTL 418
Query: 676 PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIR 710
CAH C+ C + + K+ K CP CR I+ + R
Sbjct: 419 NCAHS-FCSYCINEWMKR-KVECPICRKDIKSKTR 451
>sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=3
Length = 1941
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 27/253 (10%)
Query: 306 HSQPQACVSVMAGRDASLVASGAE---VTVENCEDSKNLKDPNGVDSVLSKMRDLNIDEN 362
H Q QA R ASL+A+ E +E E S+ L + +L LN+ +
Sbjct: 1675 HEQAQAL-----ERRASLLAAELEELRAALEQGERSRRLAE----QELLEATERLNLLHS 1725
Query: 363 LETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMERE 422
T +QK ++ + ++E +ER+E A +KA +A + ELK E++
Sbjct: 1726 QNTGLLNQKKKLEADLAQLSGEVEEAAQERRE-AEEKAKKAITDAAMMAEELKK---EQD 1781
Query: 423 ETQRLKKGKQTLEDTTMK---RLSEMENA-LRKASGQVDRANAAVRRLETENAEIRAEME 478
+ L++ K+TLE T + RL E E A LR QV + A VR LE AE++
Sbjct: 1782 TSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELE-------AELD 1834
Query: 479 ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538
A + AE++ + +R K+ + K A++Q+ + + K+K ++ +Q
Sbjct: 1835 AEQKKHAEALKGVRKHERRVKELAYQAEEDRKNLARMQDLVDKLQSKVKSYKRQFEEAEQ 1894
Query: 539 DQKETESKWRQEQ 551
+K+R+ Q
Sbjct: 1895 QANTNLAKYRKAQ 1907
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 548 RQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSR- 606
RQ +K + ++E+E R+ + + + +A ++E FQ LQ LE+E
Sbjct: 278 RQTRKGSSKKIVRMEKELRNLQSQLYAEQAQQQARVEQLEKTFQEEAHYLQGLEKEQGEC 337
Query: 607 -LKASAESNEQNHQS--------------------NTLPPGKLERAKPQGETIARLLHEL 645
LK Q HQ+ L K E+ K Q + L H
Sbjct: 338 DLKQQLVQALQEHQALMEELNCSKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSHMN 397
Query: 646 DELEDSSEKETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705
D LE+ + CIIC + + V L CAH C+ C + + K+ K CP CR I
Sbjct: 398 DLLEN--------ELQCIICSEYFIEAVTLNCAHS-FCSFCINEWMKR-KVECPICRKDI 447
Query: 706 EQR 708
E R
Sbjct: 448 ESR 450
>sp|A2AQP0|MYH7B_MOUSE Myosin-7B OS=Mus musculus GN=Myh7b PE=3 SV=1
Length = 1941
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 357 LNIDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKM 416
LN+ + T +QK ++ V + ++E +ER+E A +KA +A + ELK
Sbjct: 1720 LNLLHSQNTGLLNQKKKLEVDLAQLSGEVEEAAQERRE-AEEKAKKAITDAAMMAEELKK 1778
Query: 417 LRMEREETQRLKKGKQTLEDTTMK---RLSEMENA-LRKASGQVDRANAAVRRLETENAE 472
E++ + L++ K+TLE T + RL E E A LR QV + A VR LE
Sbjct: 1779 ---EQDTSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELE----- 1830
Query: 473 IRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532
AE++A + AE++ + +R K+ + + K A++Q+ + + K+K ++
Sbjct: 1831 --AELDAEQKKHAEALKGVRKHERRVKELVYQTEEDRKNLARMQDLVDKLQSKVKSYKRQ 1888
Query: 533 LARIQQDQKETESKWRQEQ 551
+Q +K+R+ Q
Sbjct: 1889 FEEAEQQASTNLAKYRKAQ 1907
>sp|Q2KJ21|CACO1_BOVIN Calcium-binding and coiled-coil domain-containing protein 1 OS=Bos
taurus GN=CALCOCO1 PE=2 SV=1
Length = 680
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 129/265 (48%), Gaps = 28/265 (10%)
Query: 354 MRDLNID---ENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSND 410
M+++ +D ++++ +T +Q+ +L Q+K+++ KE+ E Q A Q R+L+ +
Sbjct: 246 MKEVELDRVRDSVKALTREQE-----KLLGQLKEVQAD-KEQSEAELQMAQQENRRLNLE 299
Query: 411 LTELKMLRMERE-ETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRL 466
L E K + E+ + QRLK ++DT +R++E+E + G + A ++ ++
Sbjct: 300 LQEAKDRQEEQSAQAQRLKDKVAQMKDTLGQVQQRVAELEPLKEQLRGAQELAASSQQKA 359
Query: 467 ETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL-------AWEKQKAKLQEEI 519
E+ + A + AE + LEVA + + L W K++A L + +
Sbjct: 360 ALLGEELASAAGARDRTIAELHRSRLEVAGVNGRLAELSLHLKEEKSQWSKERAGLLQSV 419
Query: 520 ANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKL 579
EK+KI +L + R+ E ++E+ ++ ++ E+ S + +KR+L
Sbjct: 420 EAEKDKILKLSAEILRL-------EKAVQEEKTQSQVFKTELAREKDSSLVQLSESKREL 472
Query: 580 EALRLKIEIDFQRHKDDLQRLEQEF 604
LR + + Q+ K+ LQ +QE
Sbjct: 473 TELRSALRV-LQKEKEQLQEEKQEL 496
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 29/257 (11%)
Query: 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS---------- 483
LED T KRL+EME +V +++ +E + A++R E +L
Sbjct: 679 LEDVT-KRLAEMEEKTALLEQEVKTLKHSIQDMEKKLADLRETGEGLRLKQQDVKGQLYE 737
Query: 484 ---AAESVTTCLEVAKREKKCLKRLLAWEK-QKAKLQEEIANEKEKIKELQQCLARI-QQ 538
A +++ T LE+ +EK L K +K KL+EE++ EK+K+L++ + R+ +Q
Sbjct: 738 LQVAEKNINTHLELYDQEKSALSESDEERKVRKRKLEEELSAVSEKMKQLEEDIDRLTKQ 797
Query: 539 DQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQ 598
Q ++ +K + EL +A ++E+ K E N +L+ + E+ + K+DL
Sbjct: 798 KQTQSSTKESLSNELTELKIAAAKKEQACK--GEEDNLARLKKELTETELALKEAKEDLS 855
Query: 599 RLEQEFSRLKASAESNEQ------NHQSNTLPPGKLERAKPQGETIARLLHELDELEDSS 652
L E S + E E+ N ++ T+ L R + +L H LD E
Sbjct: 856 FLTSEMSSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQR-----IKLQHGLDTYEREL 910
Query: 653 EKETNCDRDCIICLKDE 669
++ + LKDE
Sbjct: 911 KEMKRLYKQKTTLLKDE 927
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related protein OS=Mus musculus
GN=Hip1r PE=1 SV=2
Length = 1068
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 33/274 (12%)
Query: 326 SGAEVTVENCEDSKNLKDPNGVDSVLSKMRDLNIDENLETITDDQKDEI----------V 375
+G V V + D + PNG + RDL I ENL+ + + E+ +
Sbjct: 327 AGEPVVVADLFD-QTFGPPNGS---MKDDRDLQI-ENLKREVETLRAELEKIKMEAQRYI 381
Query: 376 VTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRME-------REETQRLK 428
+ Q+ LE +++E+++ QKA+ +L ++L +LK L++E REE +R
Sbjct: 382 SQLKGQVNGLEAELEEQRKQK-QKALVDNEQLRHELAQLKALQLEGARNQGLREEAER-- 438
Query: 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV 488
K + + +L E + L ++ R NA + T + + E+ K E +
Sbjct: 439 --KASATEARYSKLKEKHSELINTHAELLRKNADTAKQLTVTQQSQEEVARVK----EQL 492
Query: 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWR 548
+E AKRE + ++ Q KL+ E+A ++ Q+ L+R +Q E S+
Sbjct: 493 AFQMEQAKRESEM--KMEEQSDQLEKLKRELAARAGELARAQEALSRTEQSGSELSSRLD 550
Query: 549 QEQKAKELLLAQVEEERRSKEGAEAGNKRKLEAL 582
KE L V + A++ + K EAL
Sbjct: 551 TLNAEKEALSGVVRQREAELLAAQSLVREKEEAL 584
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1
Length = 760
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKR 504
+++ LR A V R + R++++E A A++EA + + AES+T +R
Sbjct: 381 LQDRLRDAEAAVKREQESYRQIQSEFAARLAKVEAERQTLAESLTNA-----------ER 429
Query: 505 LLAWEKQKAK-LQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEE 563
L EKQ+A+ LQ++ + + + +Q L QD K S+ Q +KE L+ ++E
Sbjct: 430 RLTEEKQRAEDLQQQAKSSRSAAEYTKQEL----QDYKNKASRILQ---SKEKLINSLKE 482
Query: 564 ER--RSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKASAES 613
EGA AG +E++ RH+ +LQR +E +L+A +S
Sbjct: 483 GSGLEVLEGAGAG-----------VELEELRHEKELQR--EEIQKLQAQIQS 521
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 37/238 (15%)
Query: 325 ASGAEVTVENCEDSKNLKDPNGVDSVLSKMRDLNIDENLETITDDQKDEIVVTMLHQIKD 384
G T+ E D GV+ + + + + N +T+T++ E + +LH ++
Sbjct: 248 VQGMPHTLAPYEKMDRRPDSFGVEELTTMTPEYTVRYNGQTMTEN---EFLNQLLHIVQH 304
Query: 385 LERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSE 444
++ V ER++ + M+ R LR E+EE R + ++ LE++ R +E
Sbjct: 305 -QKTVSERQQQEKFEKMEQER-----------LRQEKEEKARELERRRKLEESETARQAE 352
Query: 445 MENALRKASGQVDRANAAVRRLET--------ENAEIRAE---MEASKLSAAESVTTCLE 493
++ + Q A R LE EN +R E ME SK+ E + LE
Sbjct: 353 LDRQATIYAEQERMAMERNRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQ--LE 410
Query: 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQ 551
++ ++ + L A +K KLQEE E+ +++QQ ++Q +++ E+ RQEQ
Sbjct: 411 RQRKNERVRQELEA--ARKYKLQEE-----ERQRKIQQQKVEMEQIRQQEEA--RQEQ 459
>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2
Length = 1674
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRL 466
L+N E+ + + +E + +K QTL+ ++L +++ +R + D+ + +
Sbjct: 647 LANITCEIAIKQKLIDELENSQKRLQTLKKQYEEKLMMLQHKIRDTQLERDQVLQNLGSV 706
Query: 467 ETENAE----IRAEMEASKLSAAESVTTCLEVAKREK-KCLKRLLAWEKQKAKLQEEIAN 521
E+ + E +R+E E KL A L+ A++E + LK +EKQ KLQ+++
Sbjct: 707 ESYSEEKAKKVRSEYE-KKLQAMNKELQRLQAAQKEHARLLKNQSQYEKQLKKLQQDVM- 764
Query: 522 EKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEA 581
E+++ R+ + KE + K R + + +AQ+++++R ++ R LEA
Sbjct: 765 ------EMKKTKVRLMKQMKEEQEKARLTESRRNREIAQLKKDQRKRD----HQLRLLEA 814
Query: 582 LRLKIEIDFQRHKDDLQRLEQEF 604
+ E+ +R +++ L ++
Sbjct: 815 QKRNQEVVLRRKTEEVTALRRQV 837
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 33.1 bits (74), Expect = 8.5, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSK 568
E+ + + QE++ E+E ++ Q+ L + + +++ + + ++E++ K ++E E++ +
Sbjct: 2759 ERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQ 2818
Query: 569 EGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSR 606
E KR+ E RL+ E +R + + + E+E R
Sbjct: 2819 LQKEEELKRQ-EQERLQKEEALKRQEQERLQKEEELKR 2855
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,092,757
Number of Sequences: 539616
Number of extensions: 10864230
Number of successful extensions: 62499
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 3230
Number of HSP's that attempted gapping in prelim test: 45689
Number of HSP's gapped (non-prelim): 10769
length of query: 716
length of database: 191,569,459
effective HSP length: 125
effective length of query: 591
effective length of database: 124,117,459
effective search space: 73353418269
effective search space used: 73353418269
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)