Query 005057
Match_columns 716
No_of_seqs 331 out of 1391
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 99.8 2.1E-16 4.5E-21 181.4 32.8 307 364-712 384-697 (698)
2 KOG4172 Predicted E3 ubiquitin 99.0 1.4E-11 3E-16 98.0 -2.4 56 659-714 7-62 (62)
3 PF13920 zf-C3HC4_3: Zinc fing 98.9 5.6E-10 1.2E-14 88.5 2.6 49 659-708 2-50 (50)
4 KOG4265 Predicted E3 ubiquitin 98.9 4.4E-10 9.5E-15 120.4 2.3 57 657-714 288-344 (349)
5 KOG0317 Predicted E3 ubiquitin 98.4 9.9E-08 2.1E-12 99.9 2.6 49 658-708 238-286 (293)
6 PHA02929 N1R/p28-like protein; 98.4 2.3E-07 5.1E-12 96.3 4.5 53 659-713 174-234 (238)
7 PLN03208 E3 ubiquitin-protein 98.4 2.5E-07 5.5E-12 92.7 4.4 55 658-713 17-88 (193)
8 KOG1571 Predicted E3 ubiquitin 98.3 1.2E-07 2.5E-12 102.1 0.7 52 658-714 304-355 (355)
9 KOG4275 Predicted E3 ubiquitin 98.3 5.1E-08 1.1E-12 101.7 -2.3 51 659-714 300-350 (350)
10 PF13923 zf-C3HC4_2: Zinc fing 98.3 4E-07 8.8E-12 68.5 2.2 38 662-701 1-39 (39)
11 KOG0823 Predicted E3 ubiquitin 98.2 9.5E-07 2.1E-11 90.3 3.3 56 657-713 45-104 (230)
12 TIGR02169 SMC_prok_A chromosom 98.2 0.0055 1.2E-07 76.5 36.6 17 374-390 185-201 (1164)
13 PF15227 zf-C3HC4_4: zinc fing 98.2 1.5E-06 3.2E-11 66.9 3.0 39 662-701 1-42 (42)
14 KOG0320 Predicted E3 ubiquitin 98.1 9.9E-07 2.1E-11 86.8 1.7 52 659-712 131-186 (187)
15 PF13639 zf-RING_2: Ring finge 98.1 1E-06 2.2E-11 68.0 1.4 40 661-702 2-44 (44)
16 TIGR02168 SMC_prok_B chromosom 98.1 0.012 2.6E-07 73.3 36.5 6 597-602 931-936 (1179)
17 cd00162 RING RING-finger (Real 98.1 3.1E-06 6.8E-11 63.5 3.2 44 661-705 1-45 (45)
18 PHA02926 zinc finger-like prot 98.0 3E-06 6.6E-11 86.2 3.7 52 659-711 170-235 (242)
19 TIGR02169 SMC_prok_A chromosom 98.0 0.013 2.8E-07 73.2 36.0 18 591-608 479-496 (1164)
20 PRK02224 chromosome segregatio 98.0 0.012 2.6E-07 72.0 34.8 8 660-667 452-459 (880)
21 PF00097 zf-C3HC4: Zinc finger 98.0 3.5E-06 7.6E-11 63.7 2.3 39 662-701 1-41 (41)
22 PRK03918 chromosome segregatio 98.0 0.018 4E-07 70.3 35.5 6 661-666 437-442 (880)
23 KOG1100 Predicted E3 ubiquitin 98.0 2.6E-06 5.6E-11 87.1 1.9 47 662-713 161-207 (207)
24 smart00184 RING Ring finger. E 98.0 4.5E-06 9.8E-11 60.5 2.6 39 662-701 1-39 (39)
25 KOG0250 DNA repair protein RAD 97.9 0.041 8.8E-07 67.3 35.4 192 345-537 162-385 (1074)
26 TIGR00599 rad18 DNA repair pro 97.9 5.6E-06 1.2E-10 91.9 3.0 48 658-707 25-72 (397)
27 KOG0980 Actin-binding protein 97.9 0.043 9.3E-07 65.5 34.6 118 369-497 329-446 (980)
28 COG1579 Zn-ribbon protein, pos 97.9 0.0049 1.1E-07 64.4 23.9 94 442-540 26-119 (239)
29 COG5432 RAD18 RING-finger-cont 97.8 6.3E-06 1.4E-10 86.2 1.7 46 659-706 25-70 (391)
30 smart00504 Ubox Modified RING 97.8 1.4E-05 3.1E-10 65.6 3.3 46 660-707 2-47 (63)
31 PF00261 Tropomyosin: Tropomyo 97.8 0.032 6.9E-07 58.3 29.0 44 503-546 120-163 (237)
32 PF14634 zf-RING_5: zinc-RING 97.8 1.4E-05 3.1E-10 61.8 3.1 41 661-703 1-44 (44)
33 KOG0287 Postreplication repair 97.8 6E-06 1.3E-10 88.0 1.2 47 659-707 23-69 (442)
34 PRK02224 chromosome segregatio 97.8 0.061 1.3E-06 66.0 35.6 91 374-469 476-566 (880)
35 KOG0824 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 85.4 1.8 50 659-709 7-56 (324)
36 PF09726 Macoilin: Transmembra 97.7 0.012 2.5E-07 70.5 27.0 105 500-611 542-652 (697)
37 KOG2164 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 89.1 3.0 53 659-712 186-244 (513)
38 KOG1029 Endocytic adaptor prot 97.7 0.023 5.1E-07 66.7 28.0 19 435-453 363-381 (1118)
39 KOG0971 Microtubule-associated 97.6 0.096 2.1E-06 62.7 31.6 44 491-534 398-441 (1243)
40 KOG1029 Endocytic adaptor prot 97.6 0.038 8.3E-07 65.0 27.8 147 388-537 348-506 (1118)
41 COG1196 Smc Chromosome segrega 97.6 0.18 4E-06 64.0 36.4 19 373-392 668-686 (1163)
42 PF00261 Tropomyosin: Tropomyo 97.6 0.12 2.5E-06 54.2 28.5 168 411-607 63-230 (237)
43 PRK11637 AmiB activator; Provi 97.6 0.067 1.5E-06 60.5 28.7 14 378-391 45-58 (428)
44 TIGR00570 cdk7 CDK-activating 97.5 5.8E-05 1.3E-09 81.0 3.8 48 659-707 3-55 (309)
45 KOG0161 Myosin class II heavy 97.5 0.23 4.9E-06 65.0 35.9 34 364-397 829-862 (1930)
46 KOG1785 Tyrosine kinase negati 97.5 3E-05 6.4E-10 84.2 1.2 50 660-710 370-420 (563)
47 PF13445 zf-RING_UBOX: RING-ty 97.5 3.5E-05 7.7E-10 59.7 1.2 36 662-699 1-43 (43)
48 COG5574 PEX10 RING-finger-cont 97.5 4.2E-05 9.1E-10 79.7 1.9 48 658-706 214-262 (271)
49 PRK11637 AmiB activator; Provi 97.5 0.094 2E-06 59.4 28.6 10 670-679 360-369 (428)
50 PF09730 BicD: Microtubule-ass 97.5 0.016 3.5E-07 69.0 22.9 105 421-525 15-119 (717)
51 PRK03918 chromosome segregatio 97.5 0.3 6.5E-06 59.9 34.9 26 368-393 447-472 (880)
52 COG1196 Smc Chromosome segrega 97.5 0.33 7.1E-06 61.8 35.8 8 695-702 1086-1093(1163)
53 PF07888 CALCOCO1: Calcium bin 97.4 0.4 8.7E-06 55.7 34.2 15 596-610 411-425 (546)
54 PF09726 Macoilin: Transmembra 97.3 0.0077 1.7E-07 71.9 18.6 6 44-49 66-71 (697)
55 KOG2177 Predicted E3 ubiquitin 97.3 7.6E-05 1.6E-09 76.6 1.5 44 658-703 12-55 (386)
56 KOG0161 Myosin class II heavy 97.3 0.35 7.7E-06 63.3 33.9 118 458-575 1425-1542(1930)
57 KOG0996 Structural maintenance 97.3 0.55 1.2E-05 58.2 33.2 34 385-418 313-347 (1293)
58 KOG0994 Extracellular matrix g 97.3 0.48 1E-05 58.3 31.8 96 440-535 1525-1623(1758)
59 KOG0250 DNA repair protein RAD 97.3 0.5 1.1E-05 58.2 32.3 110 430-539 306-416 (1074)
60 KOG0999 Microtubule-associated 97.2 0.15 3.3E-06 58.3 26.0 119 421-539 88-216 (772)
61 COG1579 Zn-ribbon protein, pos 97.2 0.16 3.4E-06 53.4 24.6 9 695-703 221-229 (239)
62 PF04564 U-box: U-box domain; 97.2 0.00028 6.1E-09 60.5 3.3 48 659-707 4-51 (73)
63 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00025 5.5E-09 60.9 3.0 41 660-702 20-73 (73)
64 COG5540 RING-finger-containing 97.2 0.00022 4.8E-09 75.4 3.1 48 659-707 323-373 (374)
65 PF00038 Filament: Intermediat 97.2 0.48 1E-05 51.0 34.1 169 439-611 95-278 (312)
66 COG4942 Membrane-bound metallo 97.2 0.35 7.6E-06 54.4 27.9 38 535-572 207-244 (420)
67 KOG4692 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 78.0 1.3 47 659-707 422-468 (489)
68 PF07888 CALCOCO1: Calcium bin 97.1 0.88 1.9E-05 53.0 35.4 30 508-537 288-317 (546)
69 PF05701 WEMBL: Weak chloropla 97.0 1.1 2.3E-05 52.5 33.8 86 438-523 95-192 (522)
70 PF05667 DUF812: Protein of un 97.0 0.14 3E-06 60.4 24.4 29 584-612 501-529 (594)
71 TIGR00606 rad50 rad50. This fa 97.0 0.59 1.3E-05 60.3 32.0 43 501-543 879-921 (1311)
72 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00049 1.1E-08 74.5 3.7 48 656-705 284-344 (491)
73 KOG0933 Structural maintenance 97.0 0.64 1.4E-05 56.8 29.0 98 440-537 843-940 (1174)
74 KOG0994 Extracellular matrix g 97.0 0.63 1.4E-05 57.4 28.8 20 590-609 1726-1745(1758)
75 PF15070 GOLGA2L5: Putative go 97.0 0.88 1.9E-05 54.1 30.1 85 438-522 48-141 (617)
76 PF08647 BRE1: BRE1 E3 ubiquit 96.9 0.017 3.7E-07 52.3 12.4 74 438-511 22-95 (96)
77 KOG0933 Structural maintenance 96.9 1.6 3.4E-05 53.6 31.7 28 583-610 908-935 (1174)
78 PRK04863 mukB cell division pr 96.9 1.2 2.5E-05 58.0 33.0 152 374-525 315-478 (1486)
79 KOG0612 Rho-associated, coiled 96.9 0.59 1.3E-05 58.1 28.6 21 170-191 161-181 (1317)
80 PF12128 DUF3584: Protein of u 96.9 2.1 4.5E-05 54.9 35.3 92 519-610 773-877 (1201)
81 PHA02562 46 endonuclease subun 96.9 1.1 2.5E-05 51.9 30.2 28 504-531 300-327 (562)
82 KOG0996 Structural maintenance 96.9 0.68 1.5E-05 57.4 28.3 173 396-572 811-1004(1293)
83 PRK04778 septation ring format 96.9 0.99 2.1E-05 53.2 29.5 198 375-572 167-396 (569)
84 PHA02562 46 endonuclease subun 96.8 1.5 3.2E-05 51.0 33.3 6 373-378 154-159 (562)
85 PF12128 DUF3584: Protein of u 96.8 2.1 4.6E-05 54.9 34.1 29 583-611 506-534 (1201)
86 PRK09039 hypothetical protein; 96.8 0.18 3.8E-06 55.8 21.2 41 445-485 58-98 (343)
87 PF15066 CAGE1: Cancer-associa 96.8 1 2.2E-05 50.9 26.8 142 463-604 364-508 (527)
88 PF08317 Spc7: Spc7 kinetochor 96.8 0.15 3.2E-06 55.8 20.4 37 367-404 113-151 (325)
89 TIGR00606 rad50 rad50. This fa 96.7 1.1 2.5E-05 57.7 31.1 15 442-456 767-781 (1311)
90 PF12718 Tropomyosin_1: Tropom 96.7 0.39 8.5E-06 46.7 20.7 79 461-550 42-120 (143)
91 KOG0802 E3 ubiquitin ligase [P 96.7 0.00052 1.1E-08 79.8 1.1 45 659-705 291-340 (543)
92 TIGR02977 phageshock_pspA phag 96.7 0.57 1.2E-05 48.5 22.9 112 440-551 31-147 (219)
93 KOG0311 Predicted E3 ubiquitin 96.7 0.00021 4.6E-09 77.1 -2.4 49 659-708 43-92 (381)
94 PRK04863 mukB cell division pr 96.7 0.9 1.9E-05 59.0 29.1 21 439-459 313-333 (1486)
95 KOG4674 Uncharacterized conser 96.6 3.3 7.1E-05 54.2 33.3 163 378-540 634-821 (1822)
96 KOG0971 Microtubule-associated 96.6 2.2 4.8E-05 51.8 29.4 100 437-539 273-383 (1243)
97 PRK10698 phage shock protein P 96.6 0.44 9.6E-06 49.6 21.5 111 440-550 31-146 (222)
98 PF14835 zf-RING_6: zf-RING of 96.6 0.00089 1.9E-08 56.0 1.2 43 659-705 7-50 (65)
99 KOG0999 Microtubule-associated 96.6 1.6 3.5E-05 50.4 26.8 121 489-609 93-215 (772)
100 KOG4807 F-actin binding protei 96.6 1.2 2.5E-05 49.5 24.8 30 579-608 510-539 (593)
101 KOG4628 Predicted E3 ubiquitin 96.5 0.0017 3.6E-08 71.0 3.4 47 660-707 230-279 (348)
102 KOG1853 LIS1-interacting prote 96.5 1.1 2.4E-05 47.0 23.5 146 434-608 39-184 (333)
103 KOG0976 Rho/Rac1-interacting s 96.5 2.4 5.2E-05 50.8 28.4 17 593-609 464-480 (1265)
104 KOG0963 Transcription factor/C 96.5 2.7 5.8E-05 49.3 29.7 37 525-561 286-322 (629)
105 COG5152 Uncharacterized conser 96.5 0.001 2.2E-08 66.7 1.1 52 658-711 195-246 (259)
106 PF10174 Cast: RIM-binding pro 96.4 3.8 8.1E-05 50.0 31.0 43 447-489 322-364 (775)
107 KOG0980 Actin-binding protein 96.4 3.8 8.3E-05 49.8 32.9 151 374-532 359-523 (980)
108 PF15254 CCDC14: Coiled-coil d 96.3 0.64 1.4E-05 55.4 22.8 35 455-490 382-416 (861)
109 KOG0982 Centrosomal protein Nu 96.3 0.84 1.8E-05 51.1 22.3 33 453-485 296-328 (502)
110 PF15619 Lebercilin: Ciliary p 96.3 1.5 3.3E-05 44.7 24.9 145 374-539 6-154 (194)
111 KOG0978 E3 ubiquitin ligase in 96.3 3.8 8.1E-05 49.2 32.9 143 430-572 462-607 (698)
112 KOG0018 Structural maintenance 96.3 1.5 3.3E-05 54.0 26.1 40 498-537 776-820 (1141)
113 KOG4159 Predicted E3 ubiquitin 96.2 0.003 6.5E-08 70.6 3.2 49 657-707 82-130 (398)
114 PRK01156 chromosome segregatio 96.2 5.2 0.00011 49.5 34.8 20 396-415 167-186 (895)
115 PF04849 HAP1_N: HAP1 N-termin 96.2 2.6 5.5E-05 45.9 26.0 105 457-564 163-267 (306)
116 TIGR02680 conserved hypothetic 96.2 7 0.00015 50.8 34.5 118 375-492 239-357 (1353)
117 KOG1039 Predicted E3 ubiquitin 96.1 0.0024 5.2E-08 70.0 1.7 51 658-709 160-224 (344)
118 PRK09039 hypothetical protein; 96.1 1.2 2.5E-05 49.4 22.6 30 510-539 137-166 (343)
119 PRK04778 septation ring format 96.1 2.5 5.4E-05 49.9 26.5 100 440-539 317-426 (569)
120 KOG0612 Rho-associated, coiled 96.1 6.4 0.00014 49.5 31.4 28 265-292 294-321 (1317)
121 KOG1813 Predicted E3 ubiquitin 96.0 0.002 4.2E-08 68.4 0.6 50 660-711 242-291 (313)
122 KOG0977 Nuclear envelope prote 96.0 3.4 7.4E-05 48.3 26.4 131 399-539 43-177 (546)
123 KOG0977 Nuclear envelope prote 96.0 3.8 8.3E-05 47.9 26.4 32 578-609 353-384 (546)
124 PF14447 Prok-RING_4: Prokaryo 95.9 0.0033 7.1E-08 51.1 1.2 44 660-707 8-51 (55)
125 COG4372 Uncharacterized protei 95.9 3.8 8.3E-05 45.6 27.6 37 441-477 124-160 (499)
126 COG4372 Uncharacterized protei 95.9 3.9 8.4E-05 45.6 29.9 13 377-389 78-90 (499)
127 PRK00106 hypothetical protein; 95.9 5 0.00011 47.0 27.2 11 621-631 229-239 (535)
128 PF05701 WEMBL: Weak chloropla 95.8 5.5 0.00012 46.6 33.6 81 445-525 279-359 (522)
129 PF15397 DUF4618: Domain of un 95.8 2 4.3E-05 45.8 21.4 39 380-418 63-108 (258)
130 PF06160 EzrA: Septation ring 95.8 5.8 0.00013 46.8 31.0 234 375-611 163-430 (560)
131 KOG0976 Rho/Rac1-interacting s 95.8 6.6 0.00014 47.3 30.8 24 373-396 256-279 (1265)
132 PF04012 PspA_IM30: PspA/IM30 95.8 2.8 6.1E-05 43.1 23.4 99 440-540 30-128 (221)
133 PF10174 Cast: RIM-binding pro 95.8 7.3 0.00016 47.7 33.6 23 370-392 298-320 (775)
134 KOG4403 Cell surface glycoprot 95.7 1.4 3E-05 49.5 20.6 129 397-525 237-376 (575)
135 KOG0964 Structural maintenance 95.7 3.9 8.4E-05 50.2 25.4 11 365-375 138-148 (1200)
136 COG5236 Uncharacterized conser 95.6 0.0074 1.6E-07 65.1 2.8 51 657-708 59-110 (493)
137 PF15070 GOLGA2L5: Putative go 95.6 7.3 0.00016 46.6 33.2 101 509-611 201-309 (617)
138 PF10473 CENP-F_leu_zip: Leuci 95.6 2.5 5.4E-05 41.1 20.5 53 440-492 3-55 (140)
139 COG1340 Uncharacterized archae 95.6 4.3 9.4E-05 43.9 26.2 99 440-539 138-236 (294)
140 KOG2879 Predicted E3 ubiquitin 95.6 0.0083 1.8E-07 63.2 2.9 50 658-708 238-289 (298)
141 TIGR01843 type_I_hlyD type I s 95.5 4.4 9.6E-05 44.9 24.5 13 594-606 259-271 (423)
142 PF09755 DUF2046: Uncharacteri 95.5 4.8 0.0001 43.9 26.1 167 439-611 26-201 (310)
143 COG4942 Membrane-bound metallo 95.3 6.6 0.00014 44.6 25.4 84 413-496 39-122 (420)
144 PF09789 DUF2353: Uncharacteri 95.3 1.3 2.9E-05 48.4 18.8 49 405-453 2-50 (319)
145 KOG0828 Predicted E3 ubiquitin 95.2 0.0071 1.5E-07 67.9 1.2 49 658-707 570-635 (636)
146 TIGR01843 type_I_hlyD type I s 95.2 5.3 0.00011 44.3 23.7 25 588-612 246-270 (423)
147 KOG2660 Locus-specific chromos 95.2 0.0046 1E-07 66.6 -0.5 50 659-710 15-65 (331)
148 PF12861 zf-Apc11: Anaphase-pr 95.1 0.016 3.6E-07 51.3 2.9 35 671-706 46-82 (85)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 3.1 6.6E-05 39.8 18.5 86 464-556 20-105 (132)
150 KOG0963 Transcription factor/C 95.1 9.6 0.00021 44.9 27.3 96 451-546 239-339 (629)
151 KOG0825 PHD Zn-finger protein 95.0 0.0051 1.1E-07 72.0 -0.7 50 659-710 123-175 (1134)
152 KOG0979 Structural maintenance 94.9 10 0.00022 47.0 25.8 15 361-375 141-156 (1072)
153 COG1842 PspA Phage shock prote 94.8 6 0.00013 41.4 24.0 97 440-538 31-127 (225)
154 PF10481 CENP-F_N: Cenp-F N-te 94.8 2.6 5.7E-05 44.9 18.4 120 389-539 5-124 (307)
155 PF10168 Nup88: Nuclear pore c 94.8 3.2 7E-05 50.3 21.7 93 436-531 575-667 (717)
156 PF00038 Filament: Intermediat 94.8 7.3 0.00016 42.0 32.6 116 431-549 126-248 (312)
157 PF13514 AAA_27: AAA domain 94.6 19 0.0004 46.1 31.9 65 364-429 142-212 (1111)
158 KOG4643 Uncharacterized coiled 94.5 17 0.00036 45.2 31.3 25 77-102 4-28 (1195)
159 COG0419 SbcC ATPase involved i 94.5 17 0.00038 45.3 37.4 22 348-369 120-143 (908)
160 PF15397 DUF4618: Domain of un 94.5 8.1 0.00017 41.3 24.1 22 590-611 195-216 (258)
161 KOG0964 Structural maintenance 94.4 18 0.00039 44.8 29.3 76 439-514 299-374 (1200)
162 COG0419 SbcC ATPase involved i 94.3 20 0.00043 44.8 33.6 45 372-418 472-517 (908)
163 COG4477 EzrA Negative regulato 94.2 14 0.0003 43.0 29.6 143 401-543 193-366 (570)
164 COG5220 TFB3 Cdk activating ki 94.2 0.013 2.8E-07 60.5 0.0 44 659-703 10-61 (314)
165 PF15358 TSKS: Testis-specific 94.0 5.8 0.00013 44.5 19.4 71 361-432 98-173 (558)
166 KOG2991 Splicing regulator [RN 93.8 6.5 0.00014 41.7 18.4 57 382-450 145-201 (330)
167 KOG2072 Translation initiation 93.7 22 0.00047 43.4 28.8 31 421-451 669-702 (988)
168 PF15619 Lebercilin: Ciliary p 93.6 9.6 0.00021 39.0 23.9 79 461-539 19-97 (194)
169 PF05667 DUF812: Protein of un 93.6 20 0.00044 42.7 33.4 15 594-608 577-591 (594)
170 COG1340 Uncharacterized archae 93.6 13 0.00028 40.4 31.2 58 439-496 82-142 (294)
171 KOG0995 Centromere-associated 93.6 19 0.00041 42.3 33.5 34 578-611 475-508 (581)
172 PF05483 SCP-1: Synaptonemal c 93.6 21 0.00045 42.7 32.3 133 440-572 169-302 (786)
173 smart00787 Spc7 Spc7 kinetocho 93.5 14 0.0003 40.6 22.8 88 366-485 107-196 (312)
174 PRK01156 chromosome segregatio 93.5 26 0.00056 43.5 34.9 26 368-393 464-489 (895)
175 TIGR01005 eps_transp_fam exopo 93.4 11 0.00024 45.8 23.0 70 393-468 196-265 (754)
176 KOG1003 Actin filament-coating 93.4 10 0.00023 38.8 26.5 172 376-572 7-178 (205)
177 PTZ00121 MAEBL; Provisional 93.2 35 0.00075 44.2 29.1 21 380-400 1563-1583(2084)
178 PF08317 Spc7: Spc7 kinetochor 93.1 11 0.00024 41.4 20.2 53 434-486 150-202 (325)
179 KOG2129 Uncharacterized conser 93.0 19 0.00041 40.7 22.6 20 369-388 95-115 (552)
180 PF12718 Tropomyosin_1: Tropom 93.0 9.5 0.00021 37.1 20.6 30 521-550 77-106 (143)
181 COG2433 Uncharacterized conser 93.0 7.7 0.00017 45.7 19.3 76 464-539 432-510 (652)
182 KOG0243 Kinesin-like protein [ 93.0 16 0.00035 45.7 22.9 104 416-526 405-513 (1041)
183 KOG1937 Uncharacterized conser 92.9 6.1 0.00013 44.9 17.7 36 505-540 288-323 (521)
184 PF09730 BicD: Microtubule-ass 92.9 17 0.00037 44.1 22.7 33 493-525 59-91 (717)
185 PF08614 ATG16: Autophagy prot 92.9 1.8 4E-05 43.9 12.9 37 514-550 148-184 (194)
186 PF04641 Rtf2: Rtf2 RING-finge 92.8 0.083 1.8E-06 56.1 3.3 49 657-708 111-163 (260)
187 PRK10929 putative mechanosensi 92.8 37 0.00081 43.4 27.9 62 463-524 175-236 (1109)
188 PF10186 Atg14: UV radiation r 92.8 13 0.00028 39.4 19.8 19 406-424 21-39 (302)
189 PF14570 zf-RING_4: RING/Ubox 92.7 0.071 1.5E-06 42.5 1.9 43 662-705 1-47 (48)
190 PF04012 PspA_IM30: PspA/IM30 92.7 13 0.00029 38.1 22.0 114 444-559 27-140 (221)
191 KOG4673 Transcription factor T 92.7 28 0.0006 41.7 29.0 41 545-585 571-613 (961)
192 PF11559 ADIP: Afadin- and alp 92.6 7.8 0.00017 37.6 16.4 16 595-610 133-148 (151)
193 KOG3002 Zn finger protein [Gen 92.5 0.066 1.4E-06 58.0 2.1 44 659-708 48-93 (299)
194 KOG0297 TNF receptor-associate 92.5 0.054 1.2E-06 60.8 1.4 52 658-711 20-72 (391)
195 PF10481 CENP-F_N: Cenp-F N-te 92.5 6.8 0.00015 41.9 16.5 122 364-488 2-136 (307)
196 PF00769 ERM: Ezrin/radixin/mo 92.4 9.2 0.0002 40.5 17.8 56 439-494 11-66 (246)
197 KOG0163 Myosin class VI heavy 92.4 18 0.00038 43.7 21.1 20 162-181 427-446 (1259)
198 KOG4360 Uncharacterized coiled 92.3 9 0.0002 44.2 18.2 88 474-561 204-291 (596)
199 KOG3039 Uncharacterized conser 92.2 0.11 2.4E-06 54.1 3.2 49 658-708 220-272 (303)
200 KOG1002 Nucleotide excision re 92.2 0.048 1E-06 61.9 0.5 47 658-705 535-585 (791)
201 PF05483 SCP-1: Synaptonemal c 92.1 33 0.00071 41.2 32.3 133 392-525 396-528 (786)
202 KOG1853 LIS1-interacting prote 92.1 19 0.0004 38.3 21.0 99 373-477 20-128 (333)
203 KOG1814 Predicted E3 ubiquitin 92.1 0.073 1.6E-06 59.1 1.7 34 658-692 183-219 (445)
204 PF05010 TACC: Transforming ac 92.0 17 0.00037 37.7 26.7 65 467-531 68-132 (207)
205 KOG0982 Centrosomal protein Nu 91.8 28 0.0006 39.6 23.1 111 501-611 302-419 (502)
206 KOG1001 Helicase-like transcri 91.8 0.066 1.4E-06 63.9 1.0 45 660-706 455-500 (674)
207 TIGR03319 YmdA_YtgF conserved 91.7 32 0.0007 40.3 25.1 11 621-631 208-218 (514)
208 PF01576 Myosin_tail_1: Myosin 91.7 0.039 8.4E-07 67.8 -1.0 159 375-546 667-828 (859)
209 smart00787 Spc7 Spc7 kinetocho 91.7 24 0.00052 38.8 21.4 29 508-536 230-258 (312)
210 PF00769 ERM: Ezrin/radixin/mo 91.4 14 0.0003 39.2 17.8 21 590-610 184-204 (246)
211 PF08647 BRE1: BRE1 E3 ubiquit 91.1 8.7 0.00019 34.8 13.8 58 482-539 3-60 (96)
212 PRK12704 phosphodiesterase; Pr 90.9 39 0.00084 39.7 25.1 11 621-631 214-224 (520)
213 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.9 15 0.00033 35.0 19.8 32 503-534 91-122 (132)
214 KOG0979 Structural maintenance 90.9 52 0.0011 41.1 29.0 61 486-546 294-354 (1072)
215 PTZ00121 MAEBL; Provisional 90.7 64 0.0014 42.0 32.0 11 270-280 907-917 (2084)
216 KOG1937 Uncharacterized conser 90.6 36 0.00079 38.9 22.2 30 582-611 397-426 (521)
217 PRK10246 exonuclease subunit S 90.5 61 0.0013 41.4 37.0 10 659-668 503-512 (1047)
218 PF10168 Nup88: Nuclear pore c 90.5 22 0.00047 43.4 20.5 23 261-283 365-389 (717)
219 KOG0249 LAR-interacting protei 90.3 18 0.00038 43.5 18.5 24 504-527 164-187 (916)
220 PF09787 Golgin_A5: Golgin sub 90.3 43 0.00093 39.2 28.5 60 438-498 185-244 (511)
221 KOG4673 Transcription factor T 90.2 49 0.0011 39.7 32.9 60 466-525 610-677 (961)
222 PLN03188 kinesin-12 family pro 90.1 68 0.0015 41.3 27.0 37 442-478 1095-1131(1320)
223 PF11789 zf-Nse: Zinc-finger o 90.1 0.23 5E-06 40.9 2.5 42 658-700 10-53 (57)
224 PF15556 Zwint: ZW10 interacto 89.9 26 0.00056 36.1 19.9 112 421-539 58-170 (252)
225 TIGR01005 eps_transp_fam exopo 89.8 56 0.0012 39.8 23.6 32 447-478 237-268 (754)
226 PF07058 Myosin_HC-like: Myosi 89.7 15 0.00032 40.0 15.9 70 463-532 68-137 (351)
227 KOG0249 LAR-interacting protei 89.6 55 0.0012 39.5 22.7 152 379-535 107-262 (916)
228 PF04111 APG6: Autophagy prote 89.6 5.7 0.00012 43.5 13.5 91 442-539 45-135 (314)
229 KOG4643 Uncharacterized coiled 89.6 66 0.0014 40.3 31.4 25 457-481 470-494 (1195)
230 TIGR00634 recN DNA repair prot 89.3 52 0.0011 38.8 24.1 6 602-607 386-391 (563)
231 KOG2114 Vacuolar assembly/sort 89.3 0.6 1.3E-05 56.2 6.0 74 585-706 809-883 (933)
232 PF04111 APG6: Autophagy prote 89.0 9.5 0.00021 41.8 14.6 22 589-610 114-135 (314)
233 KOG0804 Cytoplasmic Zn-finger 88.8 25 0.00054 40.2 17.6 16 267-282 208-224 (493)
234 COG1842 PspA Phage shock prote 88.5 35 0.00076 35.8 20.2 42 505-546 101-142 (225)
235 KOG4185 Predicted E3 ubiquitin 88.4 0.27 5.9E-06 52.7 2.2 46 659-705 3-54 (296)
236 PF09738 DUF2051: Double stran 88.4 39 0.00084 37.1 18.5 39 585-623 223-261 (302)
237 PF10272 Tmpp129: Putative tra 88.3 0.64 1.4E-05 51.6 5.0 48 659-706 271-351 (358)
238 KOG2113 Predicted RNA binding 88.2 0.15 3.2E-06 54.9 -0.0 56 657-712 134-189 (394)
239 PF09755 DUF2046: Uncharacteri 88.2 45 0.00098 36.6 28.8 19 502-520 184-202 (310)
240 TIGR01000 bacteriocin_acc bact 88.1 55 0.0012 37.5 25.3 15 594-608 304-318 (457)
241 PF10186 Atg14: UV radiation r 87.7 40 0.00087 35.6 20.3 27 509-535 76-102 (302)
242 PTZ00266 NIMA-related protein 87.6 8.7 0.00019 48.4 14.6 13 165-177 226-238 (1021)
243 PRK00106 hypothetical protein; 87.6 67 0.0015 38.0 26.5 12 668-679 263-274 (535)
244 PF05276 SH3BP5: SH3 domain-bi 87.6 42 0.00091 35.6 27.0 103 437-539 95-206 (239)
245 KOG0804 Cytoplasmic Zn-finger 87.5 27 0.00058 40.0 16.8 14 522-535 433-446 (493)
246 KOG4593 Mitotic checkpoint pro 87.3 76 0.0016 38.3 30.4 37 442-478 146-182 (716)
247 PF05278 PEARLI-4: Arabidopsis 87.2 42 0.0009 36.2 17.4 64 466-529 198-261 (269)
248 COG5185 HEC1 Protein involved 87.2 64 0.0014 37.3 24.0 70 505-578 332-401 (622)
249 PF05557 MAD: Mitotic checkpoi 87.0 0.19 4.1E-06 60.7 0.0 90 403-492 126-216 (722)
250 PF11559 ADIP: Afadin- and alp 86.9 31 0.00068 33.4 16.0 34 445-478 57-90 (151)
251 KOG0018 Structural maintenance 86.8 99 0.0022 39.1 29.4 34 668-705 529-562 (1141)
252 KOG4367 Predicted Zn-finger pr 86.5 0.31 6.8E-06 54.3 1.4 34 659-693 4-37 (699)
253 PF05557 MAD: Mitotic checkpoi 86.4 4.9 0.00011 48.7 11.5 108 377-484 309-422 (722)
254 PF06818 Fez1: Fez1; InterPro 86.2 44 0.00096 34.5 18.9 88 375-480 12-106 (202)
255 KOG4809 Rab6 GTPase-interactin 85.9 79 0.0017 37.2 27.5 119 421-539 330-457 (654)
256 KOG2932 E3 ubiquitin ligase in 85.9 0.19 4.1E-06 54.0 -0.7 44 661-709 92-137 (389)
257 KOG2113 Predicted RNA binding 85.8 0.62 1.3E-05 50.3 3.1 51 658-711 342-392 (394)
258 KOG4572 Predicted DNA-binding 85.6 99 0.0022 38.0 25.3 31 504-534 996-1026(1424)
259 KOG1003 Actin filament-coating 85.6 47 0.001 34.2 24.5 77 464-547 56-132 (205)
260 PF15290 Syntaphilin: Golgi-lo 85.5 24 0.00051 38.1 14.4 86 525-611 83-168 (305)
261 KOG2891 Surface glycoprotein [ 85.3 59 0.0013 35.1 18.5 12 181-192 48-59 (445)
262 KOG3800 Predicted E3 ubiquitin 85.3 0.54 1.2E-05 50.3 2.3 31 674-705 20-50 (300)
263 PF05911 DUF869: Plant protein 85.2 1.1E+02 0.0023 37.9 27.6 106 443-555 606-711 (769)
264 PF13851 GAS: Growth-arrest sp 85.1 49 0.0011 34.0 21.6 73 438-523 91-163 (201)
265 PF15035 Rootletin: Ciliary ro 85.0 47 0.001 33.7 18.4 26 424-449 14-39 (182)
266 KOG2129 Uncharacterized conser 84.9 77 0.0017 36.1 22.4 47 377-423 140-190 (552)
267 KOG0946 ER-Golgi vesicle-tethe 84.8 1.1E+02 0.0024 37.7 25.8 56 485-540 767-822 (970)
268 PF07111 HCR: Alpha helical co 84.8 1E+02 0.0022 37.4 24.1 75 442-519 530-605 (739)
269 PF06156 DUF972: Protein of un 84.7 14 0.00031 34.3 11.1 39 500-538 5-43 (107)
270 TIGR02680 conserved hypothetic 84.7 1.5E+02 0.0032 39.1 31.8 18 374-391 743-760 (1353)
271 KOG0827 Predicted E3 ubiquitin 84.6 0.56 1.2E-05 51.9 2.1 46 659-705 4-55 (465)
272 PF05622 HOOK: HOOK protein; 84.5 0.3 6.4E-06 59.0 0.0 51 403-453 306-359 (713)
273 PF07800 DUF1644: Protein of u 84.5 0.45 9.8E-06 46.9 1.2 56 659-714 2-99 (162)
274 PF05911 DUF869: Plant protein 84.1 1.2E+02 0.0026 37.5 26.6 35 505-539 122-156 (769)
275 KOG0288 WD40 repeat protein Ti 83.9 53 0.0011 37.3 16.8 39 456-494 22-60 (459)
276 PF08614 ATG16: Autophagy prot 83.8 20 0.00042 36.5 12.8 76 464-539 70-145 (194)
277 PF01576 Myosin_tail_1: Myosin 83.7 0.34 7.4E-06 59.7 0.0 29 374-402 286-314 (859)
278 KOG3842 Adaptor protein Pellin 83.3 1 2.3E-05 48.6 3.4 54 657-712 339-423 (429)
279 PF04710 Pellino: Pellino; In 83.2 0.36 7.9E-06 53.6 0.0 53 659-713 328-411 (416)
280 PF14662 CCDC155: Coiled-coil 83.0 59 0.0013 33.4 26.3 13 376-388 4-16 (193)
281 KOG0163 Myosin class VI heavy 82.9 1.3E+02 0.0027 37.0 25.9 11 374-384 775-785 (1259)
282 PF06705 SF-assemblin: SF-asse 82.8 67 0.0015 33.8 26.3 24 555-578 131-154 (247)
283 PF11932 DUF3450: Protein of u 82.7 61 0.0013 34.1 16.4 45 493-537 32-76 (251)
284 PF02845 CUE: CUE domain; Int 82.6 2.1 4.6E-05 32.7 4.0 35 170-204 3-37 (42)
285 PF13166 AAA_13: AAA domain 82.5 1.2E+02 0.0026 36.5 27.9 39 365-403 265-303 (712)
286 smart00546 CUE Domain that may 82.4 2.2 4.8E-05 32.7 4.1 36 169-204 3-38 (43)
287 TIGR03017 EpsF chain length de 82.4 62 0.0014 36.6 17.5 165 434-610 158-333 (444)
288 KOG0239 Kinesin (KAR3 subfamil 82.1 1.2E+02 0.0026 37.0 20.2 32 438-469 173-204 (670)
289 cd07627 BAR_Vps5p The Bin/Amph 82.1 65 0.0014 33.2 23.3 65 486-550 98-169 (216)
290 PF10146 zf-C4H2: Zinc finger- 82.1 57 0.0012 34.4 15.6 23 682-705 196-218 (230)
291 KOG4364 Chromatin assembly fac 82.0 72 0.0016 38.3 17.5 17 595-611 366-382 (811)
292 PRK00409 recombination and DNA 82.0 47 0.001 41.0 17.2 41 161-205 244-284 (782)
293 PF13851 GAS: Growth-arrest sp 81.9 66 0.0014 33.1 24.6 89 434-540 42-130 (201)
294 PF05262 Borrelia_P83: Borreli 81.5 1.1E+02 0.0023 35.9 18.8 11 657-667 389-399 (489)
295 PRK10884 SH3 domain-containing 81.5 24 0.00052 36.5 12.4 22 437-458 90-111 (206)
296 smart00744 RINGv The RING-vari 81.4 1.2 2.5E-05 35.6 2.2 41 661-702 1-49 (49)
297 KOG1103 Predicted coiled-coil 81.4 95 0.0021 34.6 22.8 44 440-483 139-182 (561)
298 TIGR02977 phageshock_pspA phag 81.4 71 0.0015 33.1 22.6 98 443-540 27-129 (219)
299 KOG4364 Chromatin assembly fac 81.3 84 0.0018 37.8 17.8 16 184-199 79-94 (811)
300 PF05290 Baculo_IE-1: Baculovi 81.3 0.78 1.7E-05 44.0 1.4 50 659-709 80-135 (140)
301 PF09728 Taxilin: Myosin-like 81.2 91 0.002 34.2 31.1 49 444-492 111-159 (309)
302 TIGR01069 mutS2 MutS2 family p 81.1 45 0.00098 41.1 16.6 19 162-180 240-258 (771)
303 KOG3579 Predicted E3 ubiquitin 81.0 0.57 1.2E-05 49.9 0.5 33 660-693 269-305 (352)
304 PLN02939 transferase, transfer 81.0 1.7E+02 0.0036 37.2 27.4 22 590-611 378-399 (977)
305 KOG4674 Uncharacterized conser 80.8 2.2E+02 0.0047 38.4 35.3 143 383-532 121-274 (1822)
306 KOG1103 Predicted coiled-coil 80.6 37 0.00081 37.6 13.8 16 596-611 246-261 (561)
307 PRK11281 hypothetical protein; 80.5 1.9E+02 0.004 37.4 33.4 42 438-479 140-181 (1113)
308 KOG0243 Kinesin-like protein [ 80.3 1.8E+02 0.0039 37.0 21.6 120 396-532 396-526 (1041)
309 PF07111 HCR: Alpha helical co 80.1 1.5E+02 0.0032 36.0 27.2 44 370-418 63-107 (739)
310 COG5219 Uncharacterized conser 80.1 0.77 1.7E-05 55.7 1.2 48 659-707 1469-1524(1525)
311 PF09731 Mitofilin: Mitochondr 80.0 1.3E+02 0.0029 35.4 24.0 38 367-404 245-282 (582)
312 COG5222 Uncharacterized conser 80.0 0.8 1.7E-05 49.1 1.2 43 660-703 275-318 (427)
313 PF09738 DUF2051: Double stran 80.0 33 0.00072 37.6 13.5 87 440-533 84-170 (302)
314 KOG1899 LAR transmembrane tyro 79.8 49 0.0011 39.3 15.2 63 510-572 125-194 (861)
315 PF02841 GBP_C: Guanylate-bind 79.5 97 0.0021 33.5 25.9 19 590-608 279-297 (297)
316 KOG0826 Predicted E3 ubiquitin 79.1 1.2 2.7E-05 48.4 2.2 55 657-713 298-355 (357)
317 TIGR03007 pepcterm_ChnLen poly 78.6 1.3E+02 0.0029 34.6 24.3 73 389-467 159-231 (498)
318 COG4487 Uncharacterized protei 78.6 1.3E+02 0.0029 34.5 23.0 30 383-412 38-67 (438)
319 PRK00409 recombination and DNA 78.5 90 0.0019 38.6 18.1 10 18-27 33-42 (782)
320 KOG3915 Transcription regulato 78.5 23 0.00051 40.5 11.8 58 515-572 533-590 (641)
321 KOG1899 LAR transmembrane tyro 78.3 1.6E+02 0.0035 35.4 19.9 26 506-531 170-195 (861)
322 PF09304 Cortex-I_coil: Cortex 78.3 50 0.0011 30.8 12.0 38 445-482 42-79 (107)
323 KOG4403 Cell surface glycoprot 78.2 77 0.0017 36.2 15.6 27 501-527 250-276 (575)
324 PF06818 Fez1: Fez1; InterPro 78.0 90 0.002 32.3 19.3 37 504-540 67-103 (202)
325 KOG3161 Predicted E3 ubiquitin 77.7 0.76 1.7E-05 53.7 0.2 36 660-699 12-51 (861)
326 PF03962 Mnd1: Mnd1 family; I 77.6 35 0.00075 34.8 12.0 34 506-539 65-98 (188)
327 COG5185 HEC1 Protein involved 77.5 1.5E+02 0.0032 34.5 25.3 35 577-611 515-549 (622)
328 KOG0962 DNA repair protein RAD 77.5 2.3E+02 0.0051 36.8 31.8 106 502-607 970-1081(1294)
329 KOG2264 Exostosin EXT1L [Signa 77.3 19 0.00041 42.2 10.9 38 503-540 93-130 (907)
330 KOG1645 RING-finger-containing 77.0 1.6 3.4E-05 48.9 2.3 46 659-705 4-55 (463)
331 PLN03229 acetyl-coenzyme A car 76.6 1.2E+02 0.0026 37.1 17.7 79 114-195 62-159 (762)
332 PF05622 HOOK: HOOK protein; 76.6 0.81 1.8E-05 55.3 0.0 97 438-539 265-361 (713)
333 PF13514 AAA_27: AAA domain 76.5 2.4E+02 0.0051 36.4 30.9 35 354-392 596-630 (1111)
334 PF11180 DUF2968: Protein of u 76.5 67 0.0014 33.0 13.4 42 493-534 144-185 (192)
335 KOG0288 WD40 repeat protein Ti 76.3 1.5E+02 0.0032 33.9 17.9 42 440-481 20-61 (459)
336 PF05384 DegS: Sensor protein 75.9 89 0.0019 31.2 22.9 117 423-539 10-127 (159)
337 PF12325 TMF_TATA_bd: TATA ele 75.9 74 0.0016 30.3 13.7 13 590-602 98-110 (120)
338 PF10498 IFT57: Intra-flagella 75.8 1.4E+02 0.0031 33.5 17.8 16 159-174 97-112 (359)
339 TIGR01010 BexC_CtrB_KpsE polys 75.8 1.2E+02 0.0026 33.6 16.7 48 374-421 148-200 (362)
340 PF15066 CAGE1: Cancer-associa 75.6 1.6E+02 0.0035 34.1 27.7 40 444-483 387-426 (527)
341 PF13870 DUF4201: Domain of un 75.6 90 0.0019 31.1 20.4 22 590-611 147-168 (177)
342 KOG0946 ER-Golgi vesicle-tethe 75.5 2.1E+02 0.0046 35.4 24.1 35 65-108 273-307 (970)
343 COG5194 APC11 Component of SCF 75.4 2.5 5.3E-05 37.3 2.6 45 660-706 32-81 (88)
344 COG4026 Uncharacterized protei 75.3 57 0.0012 34.2 12.7 13 373-385 73-85 (290)
345 KOG1734 Predicted RING-contain 75.1 1.2 2.6E-05 47.3 0.8 49 657-706 222-281 (328)
346 PF10367 Vps39_2: Vacuolar sor 75.0 5.8 0.00012 35.5 5.1 29 659-688 78-108 (109)
347 PF05262 Borrelia_P83: Borreli 74.7 1.8E+02 0.0039 34.1 19.0 14 410-423 179-192 (489)
348 PF07798 DUF1640: Protein of u 74.7 97 0.0021 31.0 20.3 48 561-608 111-158 (177)
349 PF10473 CENP-F_leu_zip: Leuci 74.7 89 0.0019 30.6 19.7 32 505-536 75-106 (140)
350 PF14662 CCDC155: Coiled-coil 74.7 1.1E+02 0.0023 31.5 26.8 50 469-518 61-110 (193)
351 TIGR02449 conserved hypothetic 74.2 35 0.00075 29.1 9.1 55 444-533 4-58 (65)
352 COG4026 Uncharacterized protei 74.0 1.2E+02 0.0027 31.9 15.7 17 465-481 109-125 (290)
353 COG2433 Uncharacterized conser 73.7 69 0.0015 38.1 14.3 90 438-531 420-509 (652)
354 PLN03229 acetyl-coenzyme A car 73.7 2.3E+02 0.005 34.9 23.9 13 594-606 694-706 (762)
355 PF04849 HAP1_N: HAP1 N-termin 73.6 1.5E+02 0.0032 32.7 22.7 20 437-456 164-183 (306)
356 KOG0995 Centromere-associated 72.9 2.1E+02 0.0045 34.0 32.6 23 457-479 335-357 (581)
357 COG5175 MOT2 Transcriptional r 72.5 2 4.4E-05 46.8 1.8 48 659-707 14-65 (480)
358 TIGR01000 bacteriocin_acc bact 72.5 1.8E+02 0.004 33.3 22.7 32 586-617 289-320 (457)
359 KOG4572 Predicted DNA-binding 72.4 2.5E+02 0.0055 34.8 25.2 145 364-527 953-1109(1424)
360 KOG2398 Predicted proline-seri 72.4 2.3E+02 0.0049 34.2 18.8 45 516-560 138-182 (611)
361 TIGR02231 conserved hypothetic 72.0 47 0.001 38.8 13.0 10 444-453 75-84 (525)
362 PRK10698 phage shock protein P 71.7 1.3E+02 0.0029 31.3 22.6 95 445-539 29-128 (222)
363 PRK10476 multidrug resistance 71.6 1.6E+02 0.0035 32.2 16.4 18 516-533 151-168 (346)
364 PF02318 FYVE_2: FYVE-type zin 71.5 2.5 5.3E-05 39.7 1.9 44 659-703 54-102 (118)
365 PF04216 FdhE: Protein involve 70.7 1.8 4E-05 46.6 1.0 53 658-712 171-228 (290)
366 PF02050 FliJ: Flagellar FliJ 70.7 77 0.0017 28.1 16.9 30 506-535 48-77 (123)
367 PF09789 DUF2353: Uncharacteri 70.5 1.8E+02 0.0039 32.3 22.0 24 371-394 7-30 (319)
368 PF05883 Baculo_RING: Baculovi 70.4 3.2 7E-05 40.0 2.4 49 659-713 26-82 (134)
369 PF09727 CortBP2: Cortactin-bi 70.4 1.4E+02 0.0029 30.8 14.2 56 425-480 98-153 (192)
370 PF07794 DUF1633: Protein of u 70.3 2.2E+02 0.0048 33.3 16.8 86 393-478 527-635 (790)
371 PF09787 Golgin_A5: Golgin sub 70.2 2.3E+02 0.0049 33.3 24.6 23 587-609 336-358 (511)
372 TIGR03007 pepcterm_ChnLen poly 70.1 2.1E+02 0.0046 32.9 24.7 17 374-390 162-178 (498)
373 PF05266 DUF724: Protein of un 70.1 1E+02 0.0022 31.6 13.3 42 442-483 140-181 (190)
374 PLN02939 transferase, transfer 69.9 3.1E+02 0.0068 34.9 23.7 55 442-496 196-261 (977)
375 KOG4445 Uncharacterized conser 69.7 1.8 4E-05 46.6 0.7 48 658-706 114-186 (368)
376 PF06785 UPF0242: Uncharacteri 69.7 1.9E+02 0.0041 32.2 20.2 158 424-607 62-220 (401)
377 PF03854 zf-P11: P-11 zinc fin 69.7 2.6 5.6E-05 33.6 1.3 46 661-709 4-49 (50)
378 KOG2817 Predicted E3 ubiquitin 69.7 3.3 7.2E-05 46.3 2.6 54 659-713 334-394 (394)
379 PF14197 Cep57_CLD_2: Centroso 69.3 68 0.0015 27.6 10.0 34 445-478 3-36 (69)
380 COG5415 Predicted integral mem 69.1 1.5E+02 0.0033 30.9 16.6 22 590-611 132-153 (251)
381 TIGR01069 mutS2 MutS2 family p 69.0 1.5E+02 0.0032 36.7 16.7 12 194-205 268-279 (771)
382 COG3064 TolA Membrane protein 69.0 1.7E+02 0.0038 32.3 15.1 10 659-668 325-334 (387)
383 TIGR03752 conj_TIGR03752 integ 68.6 52 0.0011 38.1 11.8 64 464-533 76-139 (472)
384 PF10146 zf-C4H2: Zinc finger- 68.5 1.6E+02 0.0035 31.0 15.0 15 589-603 89-103 (230)
385 PF06008 Laminin_I: Laminin Do 68.5 1.7E+02 0.0036 31.1 21.6 167 442-608 26-198 (264)
386 PF14915 CCDC144C: CCDC144C pr 68.0 1.9E+02 0.0042 31.7 33.2 66 377-442 35-100 (305)
387 PF04949 Transcrip_act: Transc 67.8 1.3E+02 0.0029 29.7 16.6 117 412-531 31-152 (159)
388 PF03962 Mnd1: Mnd1 family; I 67.4 96 0.0021 31.6 12.4 21 501-521 108-128 (188)
389 PF06160 EzrA: Septation ring 67.4 2.7E+02 0.0058 33.1 34.8 64 508-571 250-318 (560)
390 PF13863 DUF4200: Domain of un 67.4 1.1E+02 0.0023 28.5 15.9 45 495-539 66-110 (126)
391 PRK14474 F0F1 ATP synthase sub 67.3 1.8E+02 0.0038 31.0 15.1 27 504-530 44-70 (250)
392 KOG2412 Nuclear-export-signal 67.2 2.7E+02 0.0058 33.0 17.9 28 422-449 164-191 (591)
393 PHA03096 p28-like protein; Pro 67.2 2.8 6E-05 45.4 1.4 42 661-703 180-231 (284)
394 PRK10361 DNA recombination pro 67.1 2.6E+02 0.0055 32.8 27.8 60 443-502 56-115 (475)
395 PRK11519 tyrosine kinase; Prov 66.4 3.1E+02 0.0068 33.5 19.9 29 386-414 251-279 (719)
396 KOG4787 Uncharacterized conser 66.2 2.9E+02 0.0062 33.1 19.0 41 510-550 437-485 (852)
397 PRK11281 hypothetical protein; 65.2 4.1E+02 0.0089 34.5 28.5 22 397-418 86-107 (1113)
398 KOG0244 Kinesin-like protein [ 65.2 3.6E+02 0.0079 33.9 21.4 18 159-176 156-173 (913)
399 PF07106 TBPIP: Tat binding pr 65.2 83 0.0018 31.1 11.4 19 438-456 70-88 (169)
400 PF04642 DUF601: Protein of un 65.1 54 0.0012 34.9 10.1 33 502-535 245-277 (311)
401 PF10212 TTKRSYEDQ: Predicted 64.9 2.9E+02 0.0063 32.6 22.6 158 403-574 307-513 (518)
402 PF10267 Tmemb_cc2: Predicted 64.9 2.6E+02 0.0056 32.0 16.2 7 128-134 30-36 (395)
403 KOG1265 Phospholipase C [Lipid 64.8 3.7E+02 0.008 33.8 19.8 47 374-420 1038-1086(1189)
404 PRK09841 cryptic autophosphory 64.7 3.4E+02 0.0073 33.3 18.7 22 393-414 258-279 (726)
405 PF14915 CCDC144C: CCDC144C pr 64.0 2.3E+02 0.005 31.1 31.6 99 441-539 64-173 (305)
406 KOG0825 PHD Zn-finger protein 64.0 2.5 5.4E-05 50.7 0.3 54 660-714 97-162 (1134)
407 KOG1962 B-cell receptor-associ 63.7 89 0.0019 32.7 11.4 34 446-479 164-197 (216)
408 PF05103 DivIVA: DivIVA protei 63.2 3.6 7.8E-05 38.5 1.2 26 511-536 33-58 (131)
409 cd07623 BAR_SNX1_2 The Bin/Amp 63.0 1.9E+02 0.0042 30.0 22.8 62 488-549 108-174 (224)
410 PRK09841 cryptic autophosphory 62.9 3.6E+02 0.0078 33.0 20.1 50 372-421 247-297 (726)
411 PF05377 FlaC_arch: Flagella a 62.8 38 0.00083 28.0 6.8 45 441-492 1-45 (55)
412 PF05529 Bap31: B-cell recepto 62.7 65 0.0014 32.5 10.3 30 461-490 118-147 (192)
413 KOG4657 Uncharacterized conser 62.4 2.1E+02 0.0046 30.2 13.8 50 404-453 50-99 (246)
414 KOG1265 Phospholipase C [Lipid 62.0 4.1E+02 0.009 33.4 23.7 8 412-419 953-960 (1189)
415 TIGR03185 DNA_S_dndD DNA sulfu 61.4 3.6E+02 0.0078 32.5 32.4 239 370-610 199-498 (650)
416 TIGR00618 sbcc exonuclease Sbc 61.3 4.5E+02 0.0097 33.6 37.3 9 659-667 501-509 (1042)
417 PF14569 zf-UDP: Zinc-binding 61.0 7.2 0.00016 34.3 2.5 48 659-706 9-62 (80)
418 TIGR00998 8a0101 efflux pump m 60.9 2.4E+02 0.0052 30.4 16.5 6 599-604 197-202 (334)
419 TIGR01280 xseB exodeoxyribonuc 60.9 36 0.00079 29.0 6.7 55 463-517 3-57 (67)
420 PRK11519 tyrosine kinase; Prov 60.5 3.9E+02 0.0085 32.7 20.1 49 374-422 249-298 (719)
421 PF02841 GBP_C: Guanylate-bind 60.0 2.5E+02 0.0055 30.3 16.0 34 370-403 93-126 (297)
422 PF14712 Snapin_Pallidin: Snap 59.5 1.3E+02 0.0027 26.6 11.0 75 454-529 14-90 (92)
423 PF02994 Transposase_22: L1 tr 59.3 27 0.00059 39.2 7.4 13 377-389 44-56 (370)
424 COG2882 FliJ Flagellar biosynt 59.3 1.9E+02 0.0041 28.6 18.7 36 504-539 65-100 (148)
425 KOG2264 Exostosin EXT1L [Signa 59.3 60 0.0013 38.3 10.0 55 439-493 92-146 (907)
426 PHA02825 LAP/PHD finger-like p 59.1 11 0.00024 37.4 3.8 54 658-713 7-65 (162)
427 PF06005 DUF904: Protein of un 58.6 1.2E+02 0.0027 26.2 10.4 30 442-478 6-35 (72)
428 PF02609 Exonuc_VII_S: Exonucl 58.5 63 0.0014 26.0 7.5 51 464-514 2-52 (53)
429 PF10498 IFT57: Intra-flagella 58.3 3.1E+02 0.0068 30.8 18.5 49 489-537 252-300 (359)
430 PRK06231 F0F1 ATP synthase sub 58.3 2.3E+02 0.0049 29.2 15.1 22 508-529 91-112 (205)
431 KOG1428 Inhibitor of type V ad 58.3 4.6 0.0001 51.3 1.2 51 657-708 3484-3546(3738)
432 PF13094 CENP-Q: CENP-Q, a CEN 57.6 85 0.0018 30.7 9.8 63 491-553 22-84 (160)
433 TIGR02473 flagell_FliJ flagell 57.4 1.7E+02 0.0036 27.4 17.8 32 507-538 65-96 (141)
434 TIGR02231 conserved hypothetic 57.4 1.1E+02 0.0023 35.9 12.2 9 445-453 83-91 (525)
435 KOG3799 Rab3 effector RIM1 and 57.2 35 0.00076 33.1 6.6 26 659-690 65-91 (169)
436 COG3524 KpsE Capsule polysacch 57.0 3.1E+02 0.0067 30.4 17.5 83 372-459 155-242 (372)
437 KOG1941 Acetylcholine receptor 56.8 3.6 7.9E-05 45.8 0.1 46 659-705 365-415 (518)
438 KOG1962 B-cell receptor-associ 56.7 1.1E+02 0.0023 32.1 10.6 16 466-481 149-164 (216)
439 PRK12472 hypothetical protein; 56.6 1.9E+02 0.0042 33.7 13.4 26 512-537 227-252 (508)
440 KOG0681 Actin-related protein 56.6 3.3E+02 0.0072 32.4 15.3 23 364-388 237-259 (645)
441 PF07139 DUF1387: Protein of u 56.4 3.1E+02 0.0067 30.2 14.6 58 512-572 173-231 (302)
442 PRK06231 F0F1 ATP synthase sub 55.6 2.5E+02 0.0055 28.9 14.5 23 517-539 93-115 (205)
443 TIGR01562 FdhE formate dehydro 55.6 4 8.8E-05 44.6 0.1 45 658-704 183-233 (305)
444 KOG2991 Splicing regulator [RN 55.4 3E+02 0.0065 29.7 23.8 69 382-456 75-152 (330)
445 PRK14472 F0F1 ATP synthase sub 55.2 2.2E+02 0.0049 28.2 14.6 38 497-534 50-87 (175)
446 PLN03188 kinesin-12 family pro 55.1 6.1E+02 0.013 33.2 27.2 14 381-394 968-981 (1320)
447 PF05010 TACC: Transforming ac 55.0 2.7E+02 0.0058 29.0 29.0 58 492-549 72-129 (207)
448 PF03915 AIP3: Actin interacti 54.6 3.9E+02 0.0085 30.8 18.2 110 426-543 206-318 (424)
449 KOG4001 Axonemal dynein light 54.1 1E+02 0.0022 32.0 9.7 24 588-611 228-251 (259)
450 PHA02862 5L protein; Provision 54.0 13 0.00029 36.3 3.4 51 660-712 3-58 (156)
451 PRK07352 F0F1 ATP synthase sub 54.0 2.3E+02 0.0051 28.1 15.1 33 500-532 54-86 (174)
452 PF06156 DUF972: Protein of un 53.7 52 0.0011 30.6 7.1 46 440-485 8-53 (107)
453 PRK08475 F0F1 ATP synthase sub 53.5 2.4E+02 0.0052 28.0 14.6 31 498-528 55-85 (167)
454 PRK14063 exodeoxyribonuclease 53.5 54 0.0012 28.7 6.7 56 461-516 5-60 (76)
455 PF04880 NUDE_C: NUDE protein, 53.4 22 0.00047 35.7 4.8 21 588-609 31-51 (166)
456 PF07106 TBPIP: Tat binding pr 53.2 1.5E+02 0.0033 29.2 10.9 36 504-539 73-108 (169)
457 CHL00118 atpG ATP synthase CF0 53.1 2.3E+02 0.005 27.7 15.0 26 505-530 62-87 (156)
458 PF09728 Taxilin: Myosin-like 52.4 3.6E+02 0.0077 29.7 33.7 31 504-534 203-233 (309)
459 PRK14067 exodeoxyribonuclease 52.4 50 0.0011 29.2 6.4 56 461-516 7-62 (80)
460 COG1566 EmrA Multidrug resista 52.3 3.4E+02 0.0074 30.5 14.4 29 498-526 132-160 (352)
461 PRK00977 exodeoxyribonuclease 52.2 55 0.0012 28.9 6.7 58 460-517 9-66 (80)
462 PRK14066 exodeoxyribonuclease 52.1 62 0.0013 28.3 6.9 56 462-517 5-60 (75)
463 PF15450 DUF4631: Domain of un 51.9 4.7E+02 0.01 30.9 32.4 32 372-404 181-212 (531)
464 PF12777 MT: Microtubule-bindi 51.8 2.8E+02 0.006 30.8 13.7 38 499-536 4-41 (344)
465 PRK13453 F0F1 ATP synthase sub 51.6 2.6E+02 0.0056 27.8 15.0 30 503-532 56-85 (173)
466 KOG4302 Microtubule-associated 51.6 5.3E+02 0.012 31.5 18.4 42 439-480 38-80 (660)
467 PRK14064 exodeoxyribonuclease 51.5 62 0.0014 28.2 6.8 56 462-517 7-62 (75)
468 PRK08475 F0F1 ATP synthase sub 51.5 2.6E+02 0.0056 27.8 14.4 17 509-525 52-68 (167)
469 PRK14068 exodeoxyribonuclease 51.4 64 0.0014 28.3 6.8 57 461-517 6-62 (76)
470 PF08172 CASP_C: CASP C termin 51.3 1.3E+02 0.0029 32.0 10.6 33 444-476 3-35 (248)
471 PF07246 Phlebovirus_NSM: Phle 50.9 1E+02 0.0022 33.1 9.6 44 369-417 151-194 (264)
472 TIGR02894 DNA_bind_RsfA transc 50.9 2.7E+02 0.0059 27.9 12.8 45 504-548 98-142 (161)
473 COG4717 Uncharacterized conser 50.7 6.1E+02 0.013 31.9 24.0 195 411-609 539-754 (984)
474 PF12297 EVC2_like: Ellis van 50.2 4.5E+02 0.0098 30.3 27.1 137 364-522 186-325 (429)
475 KOG0962 DNA repair protein RAD 49.9 7.3E+02 0.016 32.6 32.2 24 371-394 776-799 (1294)
476 PF12761 End3: Actin cytoskele 49.9 62 0.0013 33.3 7.5 25 503-527 167-191 (195)
477 KOG2002 TPR-containing nuclear 49.6 6.6E+02 0.014 32.0 19.2 25 413-437 718-742 (1018)
478 KOG0240 Kinesin (SMY1 subfamil 49.4 5.3E+02 0.012 30.9 22.8 10 288-297 267-276 (607)
479 KOG1812 Predicted E3 ubiquitin 49.3 7 0.00015 44.0 0.8 38 661-699 148-194 (384)
480 PF04728 LPP: Lipoprotein leuc 49.3 1.1E+02 0.0023 25.5 7.4 53 441-493 4-56 (56)
481 PF12072 DUF3552: Domain of un 49.1 3.1E+02 0.0067 28.0 24.6 168 407-593 20-189 (201)
482 PRK06975 bifunctional uroporph 49.0 4.8E+02 0.01 31.7 16.1 160 392-607 342-501 (656)
483 PF12709 Kinetocho_Slk19: Cent 49.0 2.1E+02 0.0045 25.9 12.3 82 439-547 3-86 (87)
484 CHL00019 atpF ATP synthase CF0 48.9 2.9E+02 0.0063 27.7 15.1 95 494-597 53-147 (184)
485 PF07851 TMPIT: TMPIT-like pro 48.8 2.2E+02 0.0047 31.8 12.0 81 465-545 1-89 (330)
486 KOG0577 Serine/threonine prote 48.5 5.9E+02 0.013 31.1 30.7 224 381-606 481-727 (948)
487 KOG2010 Double stranded RNA bi 48.4 1.6E+02 0.0034 32.7 10.5 93 436-549 115-207 (405)
488 TIGR03185 DNA_S_dndD DNA sulfu 48.4 5.6E+02 0.012 30.9 31.1 224 370-597 263-518 (650)
489 PF10205 KLRAQ: Predicted coil 48.3 2.3E+02 0.005 26.4 10.7 71 464-555 1-71 (102)
490 PF14257 DUF4349: Domain of un 48.3 66 0.0014 34.0 7.9 89 440-534 105-193 (262)
491 KOG2751 Beclin-like protein [S 48.2 4.9E+02 0.011 30.1 17.0 125 435-559 138-267 (447)
492 KOG4360 Uncharacterized coiled 48.0 5.3E+02 0.012 30.5 16.5 125 405-529 166-301 (596)
493 KOG2077 JNK/SAPK-associated pr 47.8 3.9E+02 0.0084 32.0 14.0 123 413-537 302-426 (832)
494 COG4913 Uncharacterized protei 47.6 6.4E+02 0.014 31.2 21.5 172 422-604 616-799 (1104)
495 KOG4661 Hsp27-ERE-TATA-binding 47.5 2.5E+02 0.0054 33.4 12.5 92 512-603 594-685 (940)
496 KOG4362 Transcriptional regula 47.5 5.1 0.00011 47.9 -0.7 48 660-708 22-71 (684)
497 PF11802 CENP-K: Centromere-as 47.5 4E+02 0.0087 28.9 15.5 107 375-486 54-179 (268)
498 PRK10929 putative mechanosensi 47.4 7.7E+02 0.017 32.1 28.1 225 383-607 26-270 (1109)
499 KOG0742 AAA+-type ATPase [Post 47.0 5.2E+02 0.011 30.1 18.6 126 462-595 96-223 (630)
500 TIGR03495 phage_LysB phage lys 47.0 2.7E+02 0.0059 27.1 11.0 77 448-524 20-96 (135)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.1e-16 Score=181.37 Aligned_cols=307 Identities=19% Similarity=0.254 Sum_probs=189.9
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH--HHHHhHHHHHHHHHhhhhhHH---HH
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELK--MLRMEREETQRLKKGKQTLED---TT 438 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk--~LR~ekee~e~lkkekqeLEe---~t 438 (716)
.-+|++.+|++-.++...+..+-.++..|.+-...+.-+.+ .|..+.+ ..-.+.++.++..+.-+.|.. .+
T Consensus 384 k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~----~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~ 459 (698)
T KOG0978|consen 384 KSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQA----LDDAERQIRQVEELSEELQKKEKNFKCLLSEMETI 459 (698)
T ss_pred hCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888765554443222 2222211 111222222222222222111 11
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeE 518 (716)
-.-..+|+.++.++..|++..+-.+++||.+.....+....+..+...+...+..+.....+...++..+|+|...++..
T Consensus 460 gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~ 539 (698)
T KOG0978|consen 460 GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 24457799999999999999999999999999988888888888888888888888888888888888888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHH
Q 005057 519 IANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQ 598 (716)
Q Consensus 519 l~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~ 598 (716)
.......+..+...++..+...-.+ ....+.+-..++...+..++++... ...+.++...+-...
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~-------~~~~~~Lq~~~ek~~~~le~i~~~~--------~e~~~ele~~~~k~~ 604 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEA-------KQSLEDLQIELEKSEAKLEQIQEQY--------AELELELEIEKFKRK 604 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 6665555555555544433221111 1111222222333333334333211 112222333334455
Q ss_pred HHHHHHHHHhhhhccccccccCCCCCCCccccCCCchhHHHHHHHHHhhhhhccccccCCccccccccccccceEEecCC
Q 005057 599 RLEQEFSRLKASAESNEQNHQSNTLPPGKLERAKPQGETIARLLHELDELEDSSEKETNCDRDCIICLKDEVSIVFLPCA 678 (716)
Q Consensus 599 ~LekELe~Lk~k~~s~~~s~e~~~Lp~~~~e~~~~q~e~~~~ll~el~~~e~~~~~~~~~~~~C~IC~~~~~~vvllpCg 678 (716)
+++.|+++|+.+....+... + .. .....+..++... .....|++|.++++++||+.||
T Consensus 605 rleEE~e~L~~kle~~k~~~-~----------~~---s~d~~L~EElk~y--------K~~LkCs~Cn~R~Kd~vI~kC~ 662 (698)
T KOG0978|consen 605 RLEEELERLKRKLERLKKEE-S----------GA---SADEVLAEELKEY--------KELLKCSVCNTRWKDAVITKCG 662 (698)
T ss_pred HHHHHHHHHHHHHHHhcccc-c----------cc---cccHHHHHHHHHH--------HhceeCCCccCchhhHHHHhcc
Confidence 66666666665542211110 0 00 0122233333332 3367999999999999999999
Q ss_pred CcccChhhHHHhcccCCCCCCCCCccccc--eEEee
Q 005057 679 HQVLCASCSDNYGKKGKATCPCCRVPIEQ--RIRVF 712 (716)
Q Consensus 679 H~vfC~~C~~~~~~~r~~~CP~CR~~i~~--~i~i~ 712 (716)
|+ ||..|+..++..|+++||.|+.+|.. +.+||
T Consensus 663 H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 663 HV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 99 99999999999999999999999954 56665
No 2
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.4e-11 Score=98.01 Aligned_cols=56 Identities=30% Similarity=0.787 Sum_probs=50.8
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
+.+|+||++.+.+.|++.|||.|+|+.|..+........||+||+||..+|+.|.+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 35899999999999999999999999999988776677899999999999998853
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.92 E-value=5.6e-10 Score=88.53 Aligned_cols=49 Identities=41% Similarity=1.032 Sum_probs=42.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
+..|.||++.+.+++++||||.+||..|+..+... ...||+||.+|..+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcCC
Confidence 35899999999999999999999999999999874 67999999999753
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.4e-10 Score=120.40 Aligned_cols=57 Identities=33% Similarity=0.916 Sum_probs=50.8
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
++..+|+||++..++++++||+|.|+|..|+..+..+ ...||+||.+|...+.|+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheeccc
Confidence 4567999999999999999999999999999998644 46899999999999888764
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.9e-08 Score=99.92 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=44.2
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
...+|++|++...+...+||||. ||.+|+..|... ...||.||.++...
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~e-k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSE-KAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHcc-ccCCCcccccCCCc
Confidence 45799999999999999999999 999999999987 45799999999764
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.39 E-value=2.3e-07 Score=96.30 Aligned_cols=53 Identities=34% Similarity=0.790 Sum_probs=43.8
Q ss_pred ccccccccccccc--------eEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeec
Q 005057 659 DRDCIICLKDEVS--------IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~~~--------vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~ 713 (716)
...|+||++...+ .++.+|+|. ||..|+..|... ..+||+||.+|..+++..+
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~-~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKE-KNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhc-CCCCCCCCCEeeEEeeeee
Confidence 4689999996433 356789999 999999999875 6799999999998877643
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.39 E-value=2.5e-07 Score=92.74 Aligned_cols=55 Identities=27% Similarity=0.704 Sum_probs=45.7
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhccc---------------CCCCCCCCCccccc--eEEeec
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK---------------GKATCPCCRVPIEQ--RIRVFG 713 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~---------------r~~~CP~CR~~i~~--~i~i~~ 713 (716)
....|.||++...+.++++|||. ||..|+..|... +...||+||.+|.. .+.+|+
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45789999999999999999999 999999987531 23589999999855 567665
No 8
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-07 Score=102.08 Aligned_cols=52 Identities=33% Similarity=0.807 Sum_probs=47.3
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
....|+||.+++.+++|+||||.|.|..|.... ..||+||..|...+++|++
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l-----~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL-----PQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhC-----CCCchhHHHHHHHHHHhcC
Confidence 356899999999999999999999999999886 6799999999999988864
No 9
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.1e-08 Score=101.68 Aligned_cols=51 Identities=37% Similarity=0.862 Sum_probs=46.8
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
+..|.||++.+++.+|++|||.|.|..|-..+ ..||+||+.|..+++||.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHHHHHhhhcC
Confidence 45899999999999999999999999998775 6999999999999999863
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.27 E-value=4e-07 Score=68.54 Aligned_cols=38 Identities=39% Similarity=1.041 Sum_probs=33.3
Q ss_pred cccccccccce-EEecCCCcccChhhHHHhcccCCCCCCCC
Q 005057 662 CIICLKDEVSI-VFLPCAHQVLCASCSDNYGKKGKATCPCC 701 (716)
Q Consensus 662 C~IC~~~~~~v-vllpCgH~vfC~~C~~~~~~~r~~~CP~C 701 (716)
|+||++...+. ++++|||. ||..|+..+... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHC-cCCCcCC
Confidence 89999999998 68999999 999999999888 6799998
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=9.5e-07 Score=90.25 Aligned_cols=56 Identities=25% Similarity=0.619 Sum_probs=48.0
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhccc--CCCCCCCCCccc--cceEEeec
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK--GKATCPCCRVPI--EQRIRVFG 713 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~--r~~~CP~CR~~i--~~~i~i~~ 713 (716)
....+|.||++..++.|++.|||. ||..|+-.|... ....||+|+..+ ..++.||+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 346799999999999999999999 999999999876 345789999766 56788887
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.17 E-value=0.0055 Score=76.46 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVK 390 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~ 390 (716)
.+..|-.++.+|+.|++
T Consensus 185 ~l~el~~~~~~L~~q~~ 201 (1164)
T TIGR02169 185 NIERLDLIIDEKRQQLE 201 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445444443
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.15 E-value=1.5e-06 Score=66.91 Aligned_cols=39 Identities=41% Similarity=0.885 Sum_probs=31.5
Q ss_pred cccccccccceEEecCCCcccChhhHHHhcccCCC---CCCCC
Q 005057 662 CIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKA---TCPCC 701 (716)
Q Consensus 662 C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~---~CP~C 701 (716)
|+||++-+.+.+.++|||. ||..|+..++..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999999998876433 59988
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.9e-07 Score=86.78 Aligned_cols=52 Identities=33% Similarity=0.703 Sum_probs=41.8
Q ss_pred ccccccccccccce--EEecCCCcccChhhHHHhcccCCCCCCCCCcccc--ceEEee
Q 005057 659 DRDCIICLKDEVSI--VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE--QRIRVF 712 (716)
Q Consensus 659 ~~~C~IC~~~~~~v--vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~--~~i~i~ 712 (716)
...|+||++....- +-+.|||+ ||..|+...... ..+||+|+..|+ .+.+||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKN-TNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHh-CCCCCCcccccchhhheecc
Confidence 47899999976543 44799999 999999998877 569999997774 456666
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.11 E-value=1e-06 Score=68.00 Aligned_cols=40 Identities=40% Similarity=0.973 Sum_probs=34.3
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCC
Q 005057 661 DCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCR 702 (716)
Q Consensus 661 ~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR 702 (716)
.|.||++.. ..++.++|+|. ||..|+..|... ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHh-CCcCCccC
Confidence 699999865 56788999999 999999999987 56999997
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.06 E-value=0.012 Score=73.33 Aligned_cols=6 Identities=50% Similarity=0.601 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005057 597 LQRLEQ 602 (716)
Q Consensus 597 l~~Lek 602 (716)
+..++.
T Consensus 931 ~~~l~~ 936 (1179)
T TIGR02168 931 LEGLEV 936 (1179)
T ss_pred HHHHHH
Confidence 333333
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.06 E-value=3.1e-06 Score=63.54 Aligned_cols=44 Identities=52% Similarity=1.142 Sum_probs=35.9
Q ss_pred ccccccccccce-EEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 661 DCIICLKDEVSI-VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 661 ~C~IC~~~~~~v-vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
.|.||++..... .+.+|+|. ||..|+..+...+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999988444 44559999 999999998876567899999764
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.04 E-value=3e-06 Score=86.17 Aligned_cols=52 Identities=21% Similarity=0.590 Sum_probs=40.7
Q ss_pred ccccccccccc---------cceEEecCCCcccChhhHHHhcccC-----CCCCCCCCccccceEEe
Q 005057 659 DRDCIICLKDE---------VSIVFLPCAHQVLCASCSDNYGKKG-----KATCPCCRVPIEQRIRV 711 (716)
Q Consensus 659 ~~~C~IC~~~~---------~~vvllpCgH~vfC~~C~~~~~~~r-----~~~CP~CR~~i~~~i~i 711 (716)
+.+|.||++.. .--++.+|+|. ||..|+..|...+ .+.||.||..+..++..
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 46899999853 12467799999 9999999998653 34599999999876543
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.03 E-value=0.013 Score=73.20 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 005057 591 QRHKDDLQRLEQEFSRLK 608 (716)
Q Consensus 591 qr~k~~l~~LekELe~Lk 608 (716)
..+..++..++.++..++
T Consensus 479 ~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 479 DRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.012 Score=72.03 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=4.7
Q ss_pred cccccccc
Q 005057 660 RDCIICLK 667 (716)
Q Consensus 660 ~~C~IC~~ 667 (716)
..|++|..
T Consensus 452 ~~Cp~C~r 459 (880)
T PRK02224 452 GKCPECGQ 459 (880)
T ss_pred ccCCCCCC
Confidence 35666654
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.99 E-value=3.5e-06 Score=63.69 Aligned_cols=39 Identities=38% Similarity=0.995 Sum_probs=35.4
Q ss_pred cccccccccceE-EecCCCcccChhhHHHhcc-cCCCCCCCC
Q 005057 662 CIICLKDEVSIV-FLPCAHQVLCASCSDNYGK-KGKATCPCC 701 (716)
Q Consensus 662 C~IC~~~~~~vv-llpCgH~vfC~~C~~~~~~-~r~~~CP~C 701 (716)
|.||++...+.+ +++|+|. ||..|+..++. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999998888 9999999 99999999988 556789998
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.99 E-value=0.018 Score=70.29 Aligned_cols=6 Identities=33% Similarity=1.088 Sum_probs=2.7
Q ss_pred cccccc
Q 005057 661 DCIICL 666 (716)
Q Consensus 661 ~C~IC~ 666 (716)
.|++|.
T Consensus 437 ~Cp~c~ 442 (880)
T PRK03918 437 KCPVCG 442 (880)
T ss_pred CCCCCC
Confidence 444443
No 23
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.6e-06 Score=87.09 Aligned_cols=47 Identities=34% Similarity=0.849 Sum_probs=43.4
Q ss_pred cccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeec
Q 005057 662 CIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 662 C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~ 713 (716)
|..|..+...|+++||.|.++|..|.... +.||+|+.+....+.||+
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~-----~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL-----RICPICRSPKTSSVEVNF 207 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC-----ccCCCCcChhhceeeccC
Confidence 99999999999999999999999998753 689999999999998874
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.97 E-value=4.5e-06 Score=60.47 Aligned_cols=39 Identities=46% Similarity=1.077 Sum_probs=35.2
Q ss_pred cccccccccceEEecCCCcccChhhHHHhcccCCCCCCCC
Q 005057 662 CIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCC 701 (716)
Q Consensus 662 C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~C 701 (716)
|.||++....+++++|+|. ||..|+..+...+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999999887556789988
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.91 E-value=0.041 Score=67.27 Aligned_cols=192 Identities=14% Similarity=0.241 Sum_probs=99.3
Q ss_pred CCcccccccccCCCccccCcCCCCChhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 005057 345 NGVDSVLSKMRDLNIDENLETITDDQKDE--------------IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLS-- 408 (716)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~~~~v~~d~k~e--------------~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~-- 408 (716)
+.+++++..| +|+++--+.|..||.--+ |=-+++.++.+.=....+-.|-+.+-+-+....|.
T Consensus 162 ~dl~~vv~~f-~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l 240 (1074)
T KOG0250|consen 162 EDLDTVVDHF-NIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNL 240 (1074)
T ss_pred HHHHHHHHHh-CcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455555544 778877779999987544 45566777777766666666767666666665554
Q ss_pred -hcHHHHHHHHHhHHHHHHHHHhhhhhHHH--------HHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHH
Q 005057 409 -NDLTELKMLRMEREETQRLKKGKQTLEDT--------TMKRLSEMENALRKASG-------QVDRANAAVRRLETENAE 472 (716)
Q Consensus 409 -~~~~Elk~LR~ekee~e~lkkekqeLEe~--------t~krLselE~el~k~~~-------qle~a~~~~~~Le~e~a~ 472 (716)
+++.+.+-+...-++.+.+.+.++.|... ..+.+-+.+..+.+... .++..-.++..++..+.+
T Consensus 241 ~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~te 320 (1074)
T KOG0250|consen 241 KKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTE 320 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 33333333333333444444444443322 12233333333333333 333333334444444444
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 473 IRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 473 lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
++++...++.+...+..-|+.+.+.-+........++.++...+..+.+.+..+..++++++.++
T Consensus 321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444444455555555555555555555555555544443
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=5.6e-06 Score=91.87 Aligned_cols=48 Identities=25% Similarity=0.570 Sum_probs=42.5
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|.||.+.+.+.++++|+|. ||..|+..++.. ...||.|+.++..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 35799999999999999999999 999999998876 4589999998764
No 27
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.91 E-value=0.043 Score=65.54 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 005057 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENA 448 (716)
Q Consensus 369 d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~e 448 (716)
|.++..|.-|.+++..+..++--=+.-|+..+-|...+|.....++.--+.+.++. ++++. +|.+...+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~---------~~e~e--qLr~elaq 397 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN---------REEQE--QLRNELAQ 397 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHH--HHHHHHHH
Confidence 99999999999999999999999999999999999887765554444333332221 11111 55566666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 005057 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (716)
Q Consensus 449 l~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~er 497 (716)
+...++|.+++...+.+.|.+......+++..|....+...--.++..+
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K 446 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRK 446 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777666555554443333333
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.89 E-value=0.0049 Score=64.43 Aligned_cols=94 Identities=26% Similarity=0.340 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
+.+....|.++..++++.+..+..++.+...++.+.-.++.+..+...-. ++....+ .-..=+++...|+.|+..
T Consensus 26 ~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~----~~~e~kl-~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI----KRAEEKL-SAVKDERELRALNIEIQI 100 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-hccccHHHHHHHHHHHHH
Confidence 33555666666666666666666666666666666655554443332222 1222222 223345566677777777
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005057 522 EKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 522 ~k~KI~~le~el~qakq~~ 540 (716)
+++++..++.++.++....
T Consensus 101 ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 101 AKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666553
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.83 E-value=6.3e-06 Score=86.21 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=41.9
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|.||.+..+-.++++|||. ||+-|+..+... +..||.||.++.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~-qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGT-QPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcC-CCCCccccccHH
Confidence 4689999999999999999999 999999999876 679999998764
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.82 E-value=1.4e-05 Score=65.55 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=41.2
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..|+||.+...+.+++||||. ||..|+..+... ...||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 369999999999999999999 999999999876 5689999998843
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.82 E-value=0.032 Score=58.35 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESK 546 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~ 546 (716)
.++...|..+.+..+-+..+..+|..++.++..+....+.++..
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444555555555555444444444333
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.82 E-value=1.4e-05 Score=61.78 Aligned_cols=41 Identities=27% Similarity=0.730 Sum_probs=34.2
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCCc
Q 005057 661 DCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRV 703 (716)
Q Consensus 661 ~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~ 703 (716)
.|.||+... ....+++|||. ||..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhc-CCCCCCcCCCC
Confidence 488999876 45789999999 9999999987 33568999985
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.81 E-value=6e-06 Score=87.96 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=42.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|-||++-+.-.+|+||+|. ||.-|+..+... ...||.|+.++..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~-~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSY-KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhcc-CCCCCceecccch
Confidence 3579999999999999999999 999999998876 6799999998854
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=97.80 E-value=0.061 Score=65.97 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
.+..+-.++.+|+.++.+++. -...+-+ ..+. ..++..++...++.+++.....+--+....++.+++.++..+.
T Consensus 476 ~~~~~~~~~~~le~~l~~~~~-~~e~l~~-~~~~---~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 476 RVEELEAELEDLEEEVEEVEE-RLERAED-LVEA---EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455566677888888887775 2221111 1121 3333444444444444433333323334445555555555555
Q ss_pred hHHHHHHHHHHHHHHH
Q 005057 454 GQVDRANAAVRRLETE 469 (716)
Q Consensus 454 ~qle~a~~~~~~Le~e 469 (716)
..++......+.++.+
T Consensus 551 ~~~~~~~~~~~~~~~~ 566 (880)
T PRK02224 551 AEAEEKREAAAEAEEE 566 (880)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444333333333333
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1e-05 Score=85.37 Aligned_cols=50 Identities=36% Similarity=0.792 Sum_probs=45.8
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceE
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRI 709 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i 709 (716)
..+|.||+......+.++|+|. ||+.|+.-.+..+++.|++||.+|...|
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 4589999998888899999999 9999999999988999999999998754
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.74 E-value=0.012 Score=70.45 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005057 500 KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKL 579 (716)
Q Consensus 500 k~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~ 579 (716)
.+..+...||.++.+|+.|+...++.+..++.++.+++... ++.+...+.++..+...+.+-..+|+....+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-------~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-------KESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46667788999999999999999888998888886655431 11133333344444444444444444332220
Q ss_pred H------HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 580 E------ALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 580 e------~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
+ ..--.+-.+++-....|..-++||..||.+.
T Consensus 615 riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 615 RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001111223334566777778888888765
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=89.05 Aligned_cols=53 Identities=36% Similarity=0.747 Sum_probs=44.9
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhccc----CCCCCCCCCccccc--eEEee
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK----GKATCPCCRVPIEQ--RIRVF 712 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~----r~~~CP~CR~~i~~--~i~i~ 712 (716)
+..|+||+..+.-++.+.|||. ||..|+-.++.. +-+.||+|+..|.. ...|+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 5689999999999999999999 999999998765 35689999999876 44444
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.023 Score=66.71 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005057 435 EDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 435 Ee~t~krLselE~el~k~~ 453 (716)
.|+.||+-.|+|.+|+|-+
T Consensus 363 qEqErk~qlElekqLerQR 381 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQR 381 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556778888888887755
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.64 E-value=0.096 Score=62.71 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
.+++++...++...+..++.++.+|+++++.+..+|..+++++.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556667778888888888888888888887754
No 40
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.038 Score=65.00 Aligned_cols=147 Identities=22% Similarity=0.283 Sum_probs=77.7
Q ss_pred HHHHHHHHHHH-HH-----HHHHHHhhhcHHHHHHHHHhHHHHHH-----HHHhhhhhHHHHHHHHHHHHHH-HHHhhhH
Q 005057 388 QVKERKEWAHQ-KA-----MQAARKLSNDLTELKMLRMEREETQR-----LKKGKQTLEDTTMKRLSEMENA-LRKASGQ 455 (716)
Q Consensus 388 ~~~~~~~wa~~-k~-----~qaa~~L~~~~~Elk~LR~ekee~e~-----lkkekqeLEe~t~krLselE~e-l~k~~~q 455 (716)
.-+|+-||+.. +- -++---|.+++..++.+.+++||.++ .-..+++|| +-|-.++|.. +..+-.|
T Consensus 348 eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE---kqRqlewErar~qem~~Q 424 (1118)
T KOG1029|consen 348 EQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE---KQRQLEWERARRQEMLNQ 424 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 34556666532 12 22333466777777777777766432 222333333 3344445543 2333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 456 VDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 456 le~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~q 535 (716)
..+...-+..+-..+..|..++++++-+..+...-+..+--.-.+....+..+-++......|+...+++|.++++-+.+
T Consensus 425 k~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 425 KNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55665666667778888888888887766655544333332333333444455555555555555555555555554444
Q ss_pred HH
Q 005057 536 IQ 537 (716)
Q Consensus 536 ak 537 (716)
+.
T Consensus 505 l~ 506 (1118)
T KOG1029|consen 505 LA 506 (1118)
T ss_pred hh
Confidence 33
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.18 Score=63.97 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005057 373 EIVVTMLHQIKDLERQVKER 392 (716)
Q Consensus 373 e~~~~l~~~~~~l~~~~~~~ 392 (716)
++. .|..++.+++.++..-
T Consensus 668 ~l~-~l~~~l~~~~~~~~~~ 686 (1163)
T COG1196 668 ELK-ELEEELAELEAQLEKL 686 (1163)
T ss_pred HHH-HHHHHHHHHHHHHHHH
Confidence 555 7778888777776554
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.56 E-value=0.12 Score=54.16 Aligned_cols=168 Identities=18% Similarity=0.278 Sum_probs=96.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 005057 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (716)
Q Consensus 411 ~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~ 490 (716)
...|.......++.++..+.+..-......||..||.++..+....+-++.+|.+..+++..+..+++.+.-.+..
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~---- 138 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA---- 138 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 3344444455555555555555544555577777777777777777777777777777777777777655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEG 570 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~ 570 (716)
.|..+..|..+|......+..++..-.++.+....++.+.+.......++-.+++...+....
T Consensus 139 -----------------~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~ 201 (237)
T PF00261_consen 139 -----------------AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKK 201 (237)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666666666666666666666666665555555555555555544444433333333
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005057 571 AEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRL 607 (716)
Q Consensus 571 aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~L 607 (716)
++.. .-..|.++...+.....++.+|...
T Consensus 202 Le~~--------id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 202 LEKE--------IDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 2233444555566666666666544
No 43
>PRK11637 AmiB activator; Provisional
Probab=97.55 E-value=0.067 Score=60.52 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 005057 378 MLHQIKDLERQVKE 391 (716)
Q Consensus 378 l~~~~~~l~~~~~~ 391 (716)
+..++++++.+++.
T Consensus 45 ~~~~l~~l~~qi~~ 58 (428)
T PRK11637 45 NRDQLKSIQQDIAA 58 (428)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
No 44
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=5.8e-05 Score=81.02 Aligned_cols=48 Identities=33% Similarity=0.800 Sum_probs=37.0
Q ss_pred cccccccccc---ccce--EEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKD---EVSI--VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~---~~~v--vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
+..|++|... ..+. .+-+|||. ||..|+..++..+...||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3479999983 2222 22379999 99999999887777789999988754
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.54 E-value=0.23 Score=65.04 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=25.2
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAH 397 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~ 397 (716)
+-++--++++.+...-++++.|+.++..=..-+.
T Consensus 829 PLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ 862 (1930)
T KOG0161|consen 829 PLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRK 862 (1930)
T ss_pred HHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999888888888888876544444
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.52 E-value=3e-05 Score=84.22 Aligned_cols=50 Identities=32% Similarity=0.767 Sum_probs=43.8
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccC-CCCCCCCCccccceEE
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKG-KATCPCCRVPIEQRIR 710 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~~~i~ 710 (716)
-.|.||-++.+++-|-||||. +|..|...|.... ..+||+||..|.+.-.
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 479999999999999999999 9999999997442 5689999999987543
No 47
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.51 E-value=3.5e-05 Score=59.69 Aligned_cols=36 Identities=36% Similarity=0.914 Sum_probs=22.0
Q ss_pred cccccccccc----eEEecCCCcccChhhHHHhcccC---CCCCC
Q 005057 662 CIICLKDEVS----IVFLPCAHQVLCASCSDNYGKKG---KATCP 699 (716)
Q Consensus 662 C~IC~~~~~~----vvllpCgH~vfC~~C~~~~~~~r---~~~CP 699 (716)
|+||.+ +.+ .++++|||+ ||..|++.+...+ .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 899998 777 788999999 9999999998753 33576
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.2e-05 Score=79.67 Aligned_cols=48 Identities=33% Similarity=0.752 Sum_probs=41.0
Q ss_pred CccccccccccccceEEecCCCcccChhhHHH-hcccCCCCCCCCCcccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDN-YGKKGKATCPCCRVPIE 706 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~-~~~~r~~~CP~CR~~i~ 706 (716)
.+.+|.||++.+-..+-+||||. ||-.|+-. |..++...||.||+...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 46799999999999999999999 99999998 65554555999998664
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.48 E-value=0.094 Score=59.37 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=4.6
Q ss_pred cceEEecCCC
Q 005057 670 VSIVFLPCAH 679 (716)
Q Consensus 670 ~~vvllpCgH 679 (716)
.++|++..|.
T Consensus 360 G~~vii~hg~ 369 (428)
T PRK11637 360 GLVVVVEHGK 369 (428)
T ss_pred ccEEEEEeCC
Confidence 3445554443
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.47 E-value=0.016 Score=69.00 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 005057 421 REETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK 500 (716)
Q Consensus 421 kee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk 500 (716)
-+..+.|..+-...|+....||.+||.++..++..+++..+...+|...+..++.+.+.+..+....-.-+++...||..
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~r 94 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREAR 94 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
.+.++..+|.+-.-||+++..+|+-
T Consensus 95 ll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988776554
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.3 Score=59.87 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=17.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 005057 368 DDQKDEIVVTMLHQIKDLERQVKERK 393 (716)
Q Consensus 368 ~d~k~e~~~~l~~~~~~l~~~~~~~~ 393 (716)
.+.+.+++-.+-.++.+|+.++..-+
T Consensus 447 ~~~~~el~~~~~~ei~~l~~~~~~l~ 472 (880)
T PRK03918 447 EEHRKELLEEYTAELKRIEKELKEIE 472 (880)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776665433
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.33 Score=61.80 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q 005057 695 KATCPCCR 702 (716)
Q Consensus 695 ~~~CP~CR 702 (716)
.+.||+|=
T Consensus 1086 ~~PaPf~v 1093 (1163)
T COG1196 1086 YRPAPFYV 1093 (1163)
T ss_pred hCCCCeee
Confidence 35677774
No 53
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.45 E-value=0.4 Score=55.69 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhh
Q 005057 596 DLQRLEQEFSRLKAS 610 (716)
Q Consensus 596 ~l~~LekELe~Lk~k 610 (716)
+|.....+|..++..
T Consensus 411 qlsE~~rel~Elks~ 425 (546)
T PF07888_consen 411 QLSENRRELQELKSS 425 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455556565553
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.0077 Score=71.94 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=3.7
Q ss_pred CCcccc
Q 005057 44 KPLSYH 49 (716)
Q Consensus 44 ~~~~~~ 49 (716)
|-|+|+
T Consensus 66 ~~~~~~ 71 (697)
T PF09726_consen 66 DSFKYQ 71 (697)
T ss_pred HHHhhh
Confidence 556666
No 55
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=7.6e-05 Score=76.58 Aligned_cols=44 Identities=36% Similarity=0.837 Sum_probs=38.9
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRV 703 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~ 703 (716)
....|.||++.+...+++||+|. ||..|+..+.. ..-.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcC-CCcCCcccCC
Confidence 35689999999988899999999 99999999876 4568999993
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.33 E-value=0.35 Score=63.34 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 458 RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 458 ~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+....+..|+.+......-+..+|....+...-+.....-.+..-..+..+..+...+.++++..++.-..+..++.++.
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444445555555555555555555555555555555555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 538 QDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGN 575 (716)
Q Consensus 538 q~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~ 575 (716)
....+......+.++.+...-.+.+..+.+.+++|...
T Consensus 1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544444444444444444445555555555543
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.55 Score=58.16 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhcHHHHHHHH
Q 005057 385 LERQVKERKEWAHQKAMQA-ARKLSNDLTELKMLR 418 (716)
Q Consensus 385 l~~~~~~~~~wa~~k~~qa-a~~L~~~~~Elk~LR 418 (716)
.++++-.|.+-..|...+- -.+|.-...++..++
T Consensus 313 kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~ 347 (1293)
T KOG0996|consen 313 KENELFRKKNKLCQYILYESRAKIAEMQEELEKIE 347 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777887777776554 445555555555444
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.28 E-value=0.48 Score=58.31 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENA---EIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a---~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.+|.+.|.-|.+.++.+++|++-..++++... .++..+|..+-.+.+..++.-++.+.-+.....+.-.+.-+...+
T Consensus 1525 ~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~ 1604 (1758)
T KOG0994|consen 1525 ASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQ 1604 (1758)
T ss_pred HhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677777788888888888776666555333 444455555544444445544444444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005057 517 EEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 517 eEl~~~k~KI~~le~el~q 535 (716)
++...+...+...-+++.+
T Consensus 1605 ~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444433
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.27 E-value=0.5 Score=58.24 Aligned_cols=110 Identities=18% Similarity=0.313 Sum_probs=80.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 430 GKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (716)
Q Consensus 430 ekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~E 509 (716)
.++.--+..+.++++.|.++..++...+..+..+..+......++.++..++-+.-+.+..+++..+.-...-+.+...+
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455678889999999999988888888888888777788887777777777777777776666666666666666
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 510 KQK-AKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 510 kq~-~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
++. ..++.++.+...|+.+|.++++.+...
T Consensus 386 ~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 386 KQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666 666777777777777777776665544
No 60
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.15 Score=58.28 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 005057 421 REETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK 500 (716)
Q Consensus 421 kee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk 500 (716)
-+..+.|..+-..-|+.+.-+|.+||++|..++..+....+...+++.....+...-.+....--..-.-+++...||..
T Consensus 88 ~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 88 EEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666777889999999999999988877777777777766666554444444444444557788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKE----------KIKELQQCLARIQQD 539 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~----------KI~~le~el~qakq~ 539 (716)
.+.....+|++-+-||+.+...++ .|..++++..=+++.
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887766544 355555555444433
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.25 E-value=0.16 Score=53.37 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=5.7
Q ss_pred CCCCCCCCc
Q 005057 695 KATCPCCRV 703 (716)
Q Consensus 695 ~~~CP~CR~ 703 (716)
...||.|..
T Consensus 221 iv~CP~CgR 229 (239)
T COG1579 221 IVFCPYCGR 229 (239)
T ss_pred CccCCccch
Confidence 456777764
No 62
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.20 E-value=0.00028 Score=60.51 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=39.5
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||.+-..+.|++||||. |+..|+..|...+...||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4689999999999999999998 99999999999877899999998865
No 63
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.19 E-value=0.00025 Score=60.91 Aligned_cols=41 Identities=37% Similarity=0.850 Sum_probs=32.6
Q ss_pred cccccccccc-------------cceEEecCCCcccChhhHHHhcccCCCCCCCCC
Q 005057 660 RDCIICLKDE-------------VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCR 702 (716)
Q Consensus 660 ~~C~IC~~~~-------------~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR 702 (716)
..|.||++.. ..+++.+|+|. |...|+..|... ..+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTT-SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhc-CCcCCCCC
Confidence 3599999755 33466789999 999999999987 45999998
No 64
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00022 Score=75.43 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=40.2
Q ss_pred ccccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..+|.||++.+ -..+.+||.|. |=..|++.|+..-...||+||.++..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCCC
Confidence 46899999865 23678999999 99999999987545789999999864
No 65
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.18 E-value=0.48 Score=51.01 Aligned_cols=169 Identities=19% Similarity=0.319 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH------HHH-------HHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVA------KRE-------KKCLKRL 505 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~------ere-------kk~~k~l 505 (716)
......||.++..++.+++.+....-.|+.++..|+.+++.++....+-...++... +.. ...+..+
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~ei 174 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREI 174 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhH
Confidence 556678999999999999988888888888888888888876654443222211111 111 0111111
Q ss_pred -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005057 506 -LAWEKQKAKLQEEIAN-EKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALR 583 (716)
Q Consensus 506 -~~~Ekq~~~LqeEl~~-~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~ 583 (716)
..++......+.+++. .+.++..+..+........................+...++..+.....++ ..+....
T Consensus 175 R~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le----~~l~~le 250 (312)
T PF00038_consen 175 RAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE----RQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh----hhHHHHH
Confidence 1233344444444443 244455555444433333222222222222222223333333333333333 2233334
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 584 LKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 584 ~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
..-..+.+.+...|..++.+|..++...
T Consensus 251 ~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 251 QRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 4455566777788888888888877665
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.35 Score=54.44 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 535 RIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 535 qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
+-++...++......+++..+++.+.....++++..++
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334445555566666677777777777777777777
No 67
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00014 Score=78.00 Aligned_cols=47 Identities=28% Similarity=0.671 Sum_probs=42.6
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
+..|+||+-.+.++||.||+|. -|+.|+.++... .+.|-+|.+.+..
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred cccCcceecccchhhccCCCCc-hHHHHHHHHHhc-CCeeeEecceeee
Confidence 5799999999999999999999 999999998876 5689999988764
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.12 E-value=0.88 Score=52.97 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+-++++.+++.+...+++..-+.+++..+.
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~ 317 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELSDAV 317 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 69
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.04 E-value=1.1 Score=52.47 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH-------HHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRK-----ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV-------TTCLEVAKREKKCLKRL 505 (716)
Q Consensus 438 t~krLselE~el~k-----~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~-------~~~~e~~erekk~~k~l 505 (716)
...|+.+||..+.. ++.+++.+...|.....+....+.+++.++.+..... .-..++....+...++.
T Consensus 95 ~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kv 174 (522)
T PF05701_consen 95 AKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKV 174 (522)
T ss_pred hHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665444 3445555556665555555555555555554444333 22333333444444555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEK 523 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k 523 (716)
..+-.++..+++.+...+
T Consensus 175 e~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 175 EELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.04 E-value=0.14 Score=60.37 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Q 005057 584 LKIEIDFQRHKDDLQRLEQEFSRLKASAE 612 (716)
Q Consensus 584 ~KaE~E~qr~k~~l~~LekELe~Lk~k~~ 612 (716)
+|...|..+...|.+.|++||..+..+.+
T Consensus 501 ~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 501 RKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888899999999998887763
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.59 Score=60.25 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
.+.....|+.++..+.+++..+...|..++.++..+......+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~ 921 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5557777888888888888877777777776666555444333
No 72
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00049 Score=74.54 Aligned_cols=48 Identities=42% Similarity=0.935 Sum_probs=39.1
Q ss_pred cCCccccccccccc-------------cceEEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 656 TNCDRDCIICLKDE-------------VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 656 ~~~~~~C~IC~~~~-------------~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
...++.|.||++.. +...-+||||. +=-.|...|..+ +.+||+||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHh-ccCCCcccCcc
Confidence 35578999999962 22245899999 999999999987 67999999983
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.64 Score=56.77 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
+.++.++.++..+...++.+...+.++..+......-+-....++....+.++.+...-....-.++.+|.++.+++.+.
T Consensus 843 ~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~ 922 (1174)
T KOG0933|consen 843 KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
Confidence 44444444444444444445455555555555555555555555555555555555544444456677777788888887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 520 ~~~k~KI~~le~el~qak 537 (716)
+.++.++..+.+....+-
T Consensus 923 ~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 923 ANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHHHHHhccchh
Confidence 777777777777655443
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.97 E-value=0.63 Score=57.39 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=11.9
Q ss_pred HhhhhHHHHHHHHHHHHHhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~ 609 (716)
++.+..+|..|+++++++..
T Consensus 1726 L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1726 LEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 44455566677777666543
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.96 E-value=0.88 Score=54.08 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhHHH--------HHHH-HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVD--------RANA-AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW 508 (716)
Q Consensus 438 t~krLselE~el~k~~~qle--------~a~~-~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~ 508 (716)
.+.++.+||..|.+++.|+. ...+ ....|..+...|+.+.+.+..+...+...-..+...-...-.++..+
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~EL 127 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAEL 127 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776662 1111 22356777777777777776655555544444444444445566667
Q ss_pred HHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANE 522 (716)
Q Consensus 509 Ekq~~~LqeEl~~~ 522 (716)
|+.+.+++++....
T Consensus 128 E~~le~~~e~~~D~ 141 (617)
T PF15070_consen 128 EEELERLQEQQEDR 141 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665443
No 76
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.94 E-value=0.017 Score=52.34 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq 511 (716)
..+.+..||..+.|+...+.+++..|+.+|+....+..++..++....++...+.++.+.|+..+..+..+|+|
T Consensus 22 k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 22 KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999888888888888776
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=1.6 Score=53.62 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 005057 583 RLKIEIDFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 583 ~~KaE~E~qr~k~~l~~LekELe~Lk~k 610 (716)
+.+.+.|+.+++.+-....++++.+..+
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 3344455555555555555555555443
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.93 E-value=1.2 Score=58.03 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKA--MQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~--~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k 451 (716)
.+-.|.++++.|+.|...=.+|-...- ......+..-...+..|....++.+....+.++--+....++..+|.++..
T Consensus 315 iL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLee 394 (1486)
T PRK04863 315 ELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888887777754432 111223333333334444433333333333333223333444555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---H-------hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 452 ASGQVDRANAAVRRLETENAEIRAEMEA---S-------KLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 452 ~~~qle~a~~~~~~Le~e~a~lr~e~Ea---~-------k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
+..++......+..++.+...++..... + .+...+....+..+.++....-..+..+|.+...++..++.
T Consensus 395 LqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333444443333333222221 1 23334444444444555555555555555555555555544
Q ss_pred HHHH
Q 005057 522 EKEK 525 (716)
Q Consensus 522 ~k~K 525 (716)
.+.+
T Consensus 475 l~~~ 478 (1486)
T PRK04863 475 FEQA 478 (1486)
T ss_pred HHHH
Confidence 4433
No 79
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.93 E-value=0.59 Score=58.08 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=14.2
Q ss_pred hHHHHHHhhCCCCChhHHHHHH
Q 005057 170 GMVCLLQQVRPHLSKGDAMWCL 191 (716)
Q Consensus 170 gLVafL~~~~P~Ls~~dAm~~L 191 (716)
.||++|-.|= .|+..=|..|+
T Consensus 161 DlltLlSk~~-~~pE~~ArFY~ 181 (1317)
T KOG0612|consen 161 DLLTLLSKFD-RLPEDWARFYT 181 (1317)
T ss_pred hHHHHHhhcC-CChHHHHHHHH
Confidence 3666666655 67777777777
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.93 E-value=2.1 Score=54.86 Aligned_cols=92 Identities=25% Similarity=0.422 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHH--H------HHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q 005057 519 IANEKEKIKELQQCLARIQQDQKETE--SKWRQEQ--K------AKELLLAQVEEERRSKEGAE---AGNKRKLEALRLK 585 (716)
Q Consensus 519 l~~~k~KI~~le~el~qakq~~~~~e--~~~kqee--~------~keea~~~~e~er~erE~aE---~~~k~k~e~~~~K 585 (716)
|...+++|.++++++..+.+....+. ..|.++. + .+-++..++...+.++.+++ +..+......+.+
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 852 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKE 852 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777777666665543332 2333331 1 22233333333333333333 2233334444445
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhh
Q 005057 586 IEIDFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 586 aE~E~qr~k~~l~~LekELe~Lk~k 610 (716)
.+.+...+++.+..++..+..++.-
T Consensus 853 le~~~~~~~~~~~~~~~~l~~l~~~ 877 (1201)
T PF12128_consen 853 LEEELKALEEQLEQLEEQLRRLRDL 877 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666555443
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.88 E-value=1.1 Score=51.91 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
++..++.++..++.++......+..+++
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555443333
No 82
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.68 Score=57.37 Aligned_cols=173 Identities=14% Similarity=0.242 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005057 396 AHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT------TMKRLSEMENALRKASGQVDRANAAVRRLETE 469 (716)
Q Consensus 396 a~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~------t~krLselE~el~k~~~qle~a~~~~~~Le~e 469 (716)
...++-++-.+|++..++.+.+-- +++.+.++.+++|.. +.+++.++++.|..+..+++.+...--+ .++
T Consensus 811 lr~~~~~l~~~l~~~~~~~k~~~~---~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~ 886 (1293)
T KOG0996|consen 811 LRERIPELENRLEKLTASVKRLAE---LIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KAR 886 (1293)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHH
Confidence 334555666667777777776655 444455555555544 2355666666666666666555322222 344
Q ss_pred HHHHHHHHHHHh-----hhHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 470 NAEIRAEMEASK-----LSAAESVTTCLEVAKREKKCL----------KRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 470 ~a~lr~e~Ea~k-----~~a~e~~~~~~e~~erekk~~----------k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
+..|+..++.+- ..-.+....++++-+.+.... ..++..++.+..+..++.....++..|.+++.
T Consensus 887 i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 887 IKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444322 222222222222222211111 13344555555555666666666666666666
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 535 RIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 535 qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
.++....+++...++-+....++..+....+.+.+.++
T Consensus 967 ~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~ 1004 (1293)
T KOG0996|consen 967 GLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIK 1004 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667767777777777766676666555
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.85 E-value=0.99 Score=53.19 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcHHHHHHHHHhHHHH-------HH-HHHhhhhhHHHHHHHH---
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQK-AMQAARKLSNDLTELKMLRMEREET-------QR-LKKGKQTLEDTTMKRL--- 442 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~k-~~qaa~~L~~~~~Elk~LR~ekee~-------e~-lkkekqeLEe~t~krL--- 442 (716)
+-.|-.++.+++.++....+|...= -.+|..-|.+=..++..|+...+++ +. +-.++++|.+..++-.
T Consensus 167 ~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~g 246 (569)
T PRK04778 167 LDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEG 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 4567789999999999999996431 2333333333333333333322222 11 2234444444433221
Q ss_pred -----HHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 443 -----SEMENALRKASGQVDR-----ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQK 512 (716)
Q Consensus 443 -----selE~el~k~~~qle~-----a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~ 512 (716)
.+++.+|..++.++.. ....+...+..+..+..+++.+--....-..+...+.+.-.+....+...+++.
T Consensus 247 y~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~ 326 (569)
T PRK04778 247 YHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQN 326 (569)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2344444444444422 333445555566666666665555545555556666666666666777777777
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 513 AKLQEEIANEKEK----------IKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 513 ~~LqeEl~~~k~K----------I~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
..|..|++..++. +..+++++..+......+...+......-.+.....+....++++++
T Consensus 327 ~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 327 KELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7888887777776 67777777777666655554444332223333333333333333333
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.84 E-value=1.5 Score=51.01 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005057 373 EIVVTM 378 (716)
Q Consensus 373 e~~~~l 378 (716)
+++..|
T Consensus 154 ~il~~l 159 (562)
T PHA02562 154 KLVEDL 159 (562)
T ss_pred HHHHHH
Confidence 344333
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.83 E-value=2.1 Score=54.85 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 583 RLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 583 ~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
+.+++.+++..+..+..++.++..+....
T Consensus 506 ~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 506 RDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555556666666666655543
No 86
>PRK09039 hypothetical protein; Validated
Probab=96.78 E-value=0.18 Score=55.77 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=16.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
++.+|..+...+......-..++.+...++.+++.++.+-.
T Consensus 58 L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 58 LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444443333
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.77 E-value=1 Score=50.95 Aligned_cols=142 Identities=19% Similarity=0.178 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhH
Q 005057 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA-RIQQDQK 541 (716)
Q Consensus 463 ~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~-qakq~~~ 541 (716)
+.+|...+.+|-.+.=.+.++.-...+.++.+++.--...+.++.-..++..||-|+.+.+.--..|++..- ++.+..+
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 456666666666666666777777777777777777777778888888888899888888888777777643 2222222
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005057 542 E--TESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEF 604 (716)
Q Consensus 542 ~--~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekEL 604 (716)
. .+...-.-...|++.+.++...+.+.|.+-..+-..+...+...|.++..+.++.++-+++.
T Consensus 444 svsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 23333333556777777777888888877766666666666677777777777777766643
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.76 E-value=0.15 Score=55.84 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 367 TDDQKDEIVV--TMLHQIKDLERQVKERKEWAHQKAMQAA 404 (716)
Q Consensus 367 ~~d~k~e~~~--~l~~~~~~l~~~~~~~~~wa~~k~~qaa 404 (716)
++|.|..|.. .+|+.---|+.. +.|-+|..+-+-..-
T Consensus 113 ~~d~r~~m~~q~~~vK~~aRl~aK-~~WYeWR~~ll~gl~ 151 (325)
T PF08317_consen 113 DPDMRLLMDNQFQLVKTYARLEAK-KMWYEWRMQLLEGLK 151 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5566665532 334444444443 689999876654443
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.74 E-value=1.1 Score=57.66 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhHH
Q 005057 442 LSEMENALRKASGQV 456 (716)
Q Consensus 442 LselE~el~k~~~ql 456 (716)
+.+++..+.++...+
T Consensus 767 le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 767 IEEQETLLGTIMPEE 781 (1311)
T ss_pred HHHHHHHHHHHHHhH
Confidence 344444444444333
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.72 E-value=0.39 Score=46.67 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.+...|+.+...+...+..++-.+.+.... ......+.+.+..|.++++....++....+.+.++....
T Consensus 42 ~K~~~lE~eld~~~~~l~~~k~~lee~~~~-----------~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 42 KKNQQLEEELDKLEEQLKEAKEKLEESEKR-----------KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555554444443333321 122225666666677777777777666666666666555
Q ss_pred HHHHHHHHHH
Q 005057 541 KETESKWRQE 550 (716)
Q Consensus 541 ~~~e~~~kqe 550 (716)
.+++.+.+..
T Consensus 111 e~~eRkv~~l 120 (143)
T PF12718_consen 111 EHFERKVKAL 120 (143)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 91
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00052 Score=79.78 Aligned_cols=45 Identities=40% Similarity=0.834 Sum_probs=40.0
Q ss_pred ccccccccccccc-----eEEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 659 DRDCIICLKDEVS-----IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~~~-----vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
...|+||.+.... +..+||+|. ||..|...|..+ ..+||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHH-hCcCCcchhhh
Confidence 5689999997766 788999999 999999999988 77999999944
No 92
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.68 E-value=0.57 Score=48.50 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT-----TCLEVAKREKKCLKRLLAWEKQKAK 514 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~-----~~~e~~erekk~~k~l~~~Ekq~~~ 514 (716)
--+.+|+..|.+++..+..+-.....+++++..+....+.+...+..... ..+++..+.+........++.+...
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999888888888888999888888888877666554332 3555666666666777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005057 515 LQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQ 551 (716)
Q Consensus 515 LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee 551 (716)
++..+...+.+|..++..+..++.....+.++.+...
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777666666655543
No 93
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00021 Score=77.10 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=40.4
Q ss_pred ccccccccccccceEE-ecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 659 DRDCIICLKDEVSIVF-LPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvl-lpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
...|.||++--+.+.. .-|.|. ||+.|+..-...+...||.||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 4589999997655544 459999 999999998888888999999877654
No 94
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.67 E-value=0.9 Score=59.00 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRA 459 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a 459 (716)
...+.+++..+.++..|.+.+
T Consensus 313 ~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 313 ARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 95
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.65 E-value=3.3 Score=54.16 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH------------------HHhHHHHHHHHHhhhhhHHHHH
Q 005057 378 MLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKML------------------RMEREETQRLKKGKQTLEDTTM 439 (716)
Q Consensus 378 l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~L------------------R~ekee~e~lkkekqeLEe~t~ 439 (716)
+-+++++|++++.-.+.=......-.-..+.+=.-++..+ ++-.+.++.++.+..+|++.+-
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887666655444422222222222222222 2345566777777777776654
Q ss_pred ---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 ---KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 440 ---krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.-|..-+..+..++.++-.++..+.+++.+...|+.+-+..+..-.....-+..+...-......+..++.+...+.
T Consensus 714 ~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e 793 (1822)
T KOG4674|consen 714 NLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELE 793 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888899999999999999999999999988876666666666666555555556666655555554
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhh
Q 005057 517 EEIAN----EKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 517 eEl~~----~k~KI~~le~el~qakq~~ 540 (716)
....+ +.++|..|..+|+.++.-+
T Consensus 794 ~s~~~~k~~~e~~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 794 ESEMATKDKCESRIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 3445666666666666553
No 96
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.62 E-value=2.2 Score=51.75 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS---AAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (716)
Q Consensus 437 ~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~---a~e~~~~~~e~~erekk~~k~l~~~Ekq~~ 513 (716)
.-|..+++|+++|.+++.+..-+.....+..++.+.+.--+|++-+. |+|.+.+++.-.+ ....++..+|-.+.
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve---~lkEr~deletdlE 349 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE---ALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34566788888888888777666666666666666665555554332 2333333322111 12234555666666
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHh
Q 005057 514 KLQEEIANE--------KEKIKELQQCLARIQQD 539 (716)
Q Consensus 514 ~LqeEl~~~--------k~KI~~le~el~qakq~ 539 (716)
.|++|+++- --...+++++...++.+
T Consensus 350 ILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 350 ILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 666665542 11245566655555443
No 97
>PRK10698 phage shock protein PspA; Provisional
Probab=96.60 E-value=0.44 Score=49.57 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT-----TCLEVAKREKKCLKRLLAWEKQKAK 514 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~-----~~~e~~erekk~~k~l~~~Ekq~~~ 514 (716)
--+.+|+..+.+++..+..+-.....+++++..+....+.+...|..... ..+++..+.+.....+..++.+...
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888888888888888899888888888877766654433 3555566666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 515 LQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 515 LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
.+..+...+..+..|+..+.+++.....+.++.+-.
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888887777776665554
No 98
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.58 E-value=0.00089 Score=56.04 Aligned_cols=43 Identities=30% Similarity=0.665 Sum_probs=24.1
Q ss_pred ccccccccccccceE-EecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 659 DRDCIICLKDEVSIV-FLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~~~vv-llpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
...|.+|.+-.+..| +..|.|. ||..|+...... .||+|+.|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~---~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGS---ECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTT---B-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCC---CCCCcCChH
Confidence 468999999888875 6889999 999999886653 699999876
No 99
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=1.6 Score=50.36 Aligned_cols=121 Identities=18% Similarity=0.258 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSK 568 (716)
Q Consensus 489 ~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~er 568 (716)
..+++-+.+|...+.++-.+|.++-.+..++..-+.....+.+.....+....-.++..........+..-+-...-.+.
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777666666666666655555555554444433333333332222222222211222222
Q ss_pred HHHHhhh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 005057 569 EGAEAGN--KRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 569 E~aE~~~--k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~ 609 (716)
-++|... -.|.-.--+.-.+|.+.+|-+|++|+.+++-+..
T Consensus 173 SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 173 SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2222211 1222222223445666666667776666555443
No 100
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=96.56 E-value=1.2 Score=49.46 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 005057 579 LEALRLKIEIDFQRHKDDLQRLEQEFSRLK 608 (716)
Q Consensus 579 ~e~~~~KaE~E~qr~k~~l~~LekELe~Lk 608 (716)
++.+-+-.|.|++.+|.+|.-|+.||+...
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667888888888888888887654
No 101
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0017 Score=71.05 Aligned_cols=47 Identities=32% Similarity=0.824 Sum_probs=39.1
Q ss_pred ccccccccccc---ceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 660 RDCIICLKDEV---SIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 660 ~~C~IC~~~~~---~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..|.||++... .+.++||.|. |=..|++.|+.+....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 48999999653 3667999999 99999999998865569999987754
No 102
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.54 E-value=1.1 Score=47.04 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (716)
Q Consensus 434 LEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~ 513 (716)
..+.-+.-=++||.+|..+. ...+.|+.++-.++.|.+++|-+..-+-. .-++....+|....
T Consensus 39 FQegSrE~EaelesqL~q~e-------trnrdl~t~nqrl~~E~e~~Kek~e~q~~----------q~y~q~s~Leddls 101 (333)
T KOG1853|consen 39 FQEGSREIEAELESQLDQLE-------TRNRDLETRNQRLTTEQERNKEKQEDQRV----------QFYQQESQLEDDLS 101 (333)
T ss_pred HhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 33333333355666555444 44577777777777777776643332211 11223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRH 593 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~ 593 (716)
.+++..+.++.-|..|++....+..+.+..+--...-+.....++.+......+..+.| -.-..++++
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke------------~llesvqRL 169 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE------------VLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHH
Confidence 44444444444444444433322222111111111112222222222222222222111 122357888
Q ss_pred hHHHHHHHHHHHHHh
Q 005057 594 KDDLQRLEQEFSRLK 608 (716)
Q Consensus 594 k~~l~~LekELe~Lk 608 (716)
|++.+.|++||.--.
T Consensus 170 kdEardlrqelavr~ 184 (333)
T KOG1853|consen 170 KDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 898899999886443
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.51 E-value=2.4 Score=50.80 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHhh
Q 005057 593 HKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 593 ~k~~l~~LekELe~Lk~ 609 (716)
+-+.|+.+...++.-+.
T Consensus 464 mv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 464 MVDRIRALMDSLEKQRK 480 (1265)
T ss_pred HHHHHHHHhhChhhhcc
Confidence 45666666666655443
No 104
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.48 E-value=2.7 Score=49.32 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005057 525 KIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQV 561 (716)
Q Consensus 525 KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~ 561 (716)
.+.+.+.+++++.....++++....+.+.-...+..+
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666665555555555544444444443
No 105
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.47 E-value=0.001 Score=66.69 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=43.8
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEe
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRV 711 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i 711 (716)
-...|.||.....+.|++.|||. ||..|+...+.. ..+|.+|.+...+...|
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQK-GDECGVCGKATYGRFWV 246 (259)
T ss_pred Cceeehhchhhccchhhhhcchh-HHHHHHHHHhcc-CCcceecchhhccceeH
Confidence 34689999999999999999999 999999987766 46899999877665443
No 106
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.39 E-value=3.8 Score=50.05 Aligned_cols=43 Identities=7% Similarity=0.139 Sum_probs=20.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q 005057 447 NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT 489 (716)
Q Consensus 447 ~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~ 489 (716)
.-|..++.++.+....+..|..++..|+.+++.......+...
T Consensus 322 ~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 322 QHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555544444333333
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.36 E-value=3.8 Score=49.77 Aligned_cols=151 Identities=19% Similarity=0.268 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
+|..+-.|+.+|+-++++-.--|++.. -=.++|..+++.|..-|.+-++...+.++....--++..|...|-..+..+.
T Consensus 359 ~~~q~~~ql~~le~~~~e~q~~~qe~~-~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 359 RIEQYENQLLALEGELQEQQREAQENR-EEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888777776554444333 2233666666655555555555554434333333333334333333333332
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 454 --------------GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 454 --------------~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
.|++.+.....+.++++..|.-.++.+++..... -.+-....+.+.+++.+++.++.++
T Consensus 438 ~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~-------~~K~e~~~~~le~l~~El~~l~~e~ 510 (980)
T KOG0980|consen 438 QEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRA-------ETKTESQAKALESLRQELALLLIEL 510 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233333333333333333322222221 1123344456666777777777777
Q ss_pred HHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQC 532 (716)
Q Consensus 520 ~~~k~KI~~le~e 532 (716)
+.++..+.++.+.
T Consensus 511 ~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 511 EELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHhhhHHHH
Confidence 7777666655554
No 108
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.35 E-value=0.64 Score=55.42 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 005057 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (716)
Q Consensus 455 qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~ 490 (716)
|.+.| ..++-|+.||+.||.++..++..+.|++++
T Consensus 382 q~EIA-LA~QplrsENaqLrRrLrilnqqlreqe~~ 416 (861)
T PF15254_consen 382 QVEIA-LAMQPLRSENAQLRRRLRILNQQLREQEKA 416 (861)
T ss_pred hhhhH-hhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 44454 458999999999999999999888887764
No 109
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.31 E-value=0.84 Score=51.12 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 453 SGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 453 ~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
..+++.-+.+++.|+.++.++|...-.++-.+.
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888999999999887776665444
No 110
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.31 E-value=1.5 Score=44.75 Aligned_cols=145 Identities=22% Similarity=0.333 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHH--HHH-HHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLED--TTM-KRLSEMENALR 450 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe--~t~-krLselE~el~ 450 (716)
|++.=.+++++|+++|.+- + ++|..=..|+++|+.-.-.-+. .+...|+ +.. ..|..+.+++.
T Consensus 6 vlSar~~ki~~L~n~l~el----q-------~~l~~l~~ENk~Lk~lq~Rq~k---AL~k~e~~e~~Lpqll~~h~eEvr 71 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAEL----Q-------RKLQELRKENKTLKQLQKRQEK---ALQKYEDTEAELPQLLQRHNEEVR 71 (194)
T ss_pred HHHhhHHHHHHHHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4455567788888887652 2 2233333566666643332222 2222232 223 45788889998
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK-REKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 451 k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~e-rekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
-++.++-++-..++.+++.......++...+-... .+.+ .+.+.+.....+..++..+...+.....+|..+
T Consensus 72 ~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~-------~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 72 VLRERLRKSQEQERELERKLKDKDEELLKTKDELK-------HLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888788888888877777777764443322 2222 233455556777788888888888888888888
Q ss_pred HHHHHHHHHh
Q 005057 530 QQCLARIQQD 539 (716)
Q Consensus 530 e~el~qakq~ 539 (716)
++++.-+...
T Consensus 145 ek~leL~~k~ 154 (194)
T PF15619_consen 145 EKQLELENKS 154 (194)
T ss_pred HHHHHHHhhH
Confidence 8877654433
No 111
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=3.8 Score=49.17 Aligned_cols=143 Identities=19% Similarity=0.181 Sum_probs=111.8
Q ss_pred hhhhhHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 005057 430 GKQTLEDTTMKRLSEMENAL---RKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL 506 (716)
Q Consensus 430 ekqeLEe~t~krLselE~el---~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~ 506 (716)
...++++..-+.+-+++.+- -++....++++..|..|+.+...+..++--++..+......+.+.-++++.+.....
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~ 541 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNES 541 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 33334444444444444333 335556678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 507 AWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 507 ~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
..+++...++.-++..+.++....+.+..++.......++..+.+....+....++-++..+.++|
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777777777776666665555555555555444
No 112
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=1.5 Score=53.97 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 005057 498 EKKCLKRLLAWEKQKAKLQEEIANE-----KEKIKELQQCLARIQ 537 (716)
Q Consensus 498 ekk~~k~l~~~Ekq~~~LqeEl~~~-----k~KI~~le~el~qak 537 (716)
.+...+++..+++|++.|.-+|.=+ +.++..|++.+....
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~ 820 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLE 820 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHH
Confidence 4444456667777777776666543 333555555544443
No 113
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.003 Score=70.55 Aligned_cols=49 Identities=27% Similarity=0.729 Sum_probs=42.5
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..+..|.||+...-..+.+||||. ||..|+++.+.. ...||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhcc-CCCCccccccccc
Confidence 456799999999888888899999 999999887665 5689999998865
No 114
>PRK01156 chromosome segregation protein; Provisional
Probab=96.18 E-value=5.2 Score=49.54 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhcHHHHH
Q 005057 396 AHQKAMQAARKLSNDLTELK 415 (716)
Q Consensus 396 a~~k~~qaa~~L~~~~~Elk 415 (716)
++.++-.+...+...+..+.
T Consensus 167 ~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.17 E-value=2.6 Score=45.94 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 457 e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
+.-..+++.|+.+|..||.+...++.+...-+.- -...-..+++++...-.|++.|.++|+........-++++.++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577777888888888777666444332221 1112334566777777777777777777666666666666665
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 537 QQDQKETESKWRQEQKAKELLLAQVEEE 564 (716)
Q Consensus 537 kq~~~~~e~~~kqee~~keea~~~~e~e 564 (716)
....-.++.+.++-....+++...+...
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555555555555556555554333
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.16 E-value=7 Score=50.85 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASG 454 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~ 454 (716)
+-.|..+++.|+.=+..|..|+...+-+.+..+-....++..++.+....+......+.-.+....++..+|.++..+..
T Consensus 239 le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ 318 (1353)
T TIGR02680 239 LERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRT 318 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666667777777777666666666666666666555444444333333333333444445555444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 455 QVD-RANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 455 qle-~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
+++ .......+...++..++.+.+.....+...+..+.
T Consensus 319 ~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~ 357 (1353)
T TIGR02680 319 RLEALQGSPAYQDAEELERARADAEALQAAAADARQAIR 357 (1353)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 11122333334444555555544444444443333
No 117
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0024 Score=70.04 Aligned_cols=51 Identities=27% Similarity=0.750 Sum_probs=40.9
Q ss_pred CccccccccccccceE-----E---ecCCCcccChhhHHHhcccCC------CCCCCCCccccceE
Q 005057 658 CDRDCIICLKDEVSIV-----F---LPCAHQVLCASCSDNYGKKGK------ATCPCCRVPIEQRI 709 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vv-----l---lpCgH~vfC~~C~~~~~~~r~------~~CP~CR~~i~~~i 709 (716)
.+..|.||++.....+ | -+|.|. ||-.|+..|...+. +.||.||.+...++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 3679999999766655 4 669999 99999999974433 78999999887654
No 118
>PRK09039 hypothetical protein; Validated
Probab=96.11 E-value=1.2 Score=49.43 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.++.+|+.+|+..+.++..++.++..+++.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555555555555444
No 119
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.08 E-value=2.5 Score=49.88 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAA----------VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~----------~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~E 509 (716)
+.|..++.....+..++++-+.. ++.++.+...+..+++.......+....|.++.+.-....+++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554 77888888888888887777777777778888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
++...+++.+...+.........+.+.+..
T Consensus 397 ~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 397 KEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666555544444444444443
No 120
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.06 E-value=6.4 Score=49.51 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=17.8
Q ss_pred ccCccccCCCccccCCchhHHHHhHhHH
Q 005057 265 MTLPRDIECPKRFNLSPSMKSLLKRNVA 292 (716)
Q Consensus 265 ~~~~~~~~~~~~~~~s~~~~~~l~~~~~ 292 (716)
|.-+..+.||--+..|+-.+.++.+-+.
T Consensus 294 m~hk~~l~FP~~~~VSeeakdLI~~ll~ 321 (1317)
T KOG0612|consen 294 MNHKESLSFPDETDVSEEAKDLIEALLC 321 (1317)
T ss_pred hchhhhcCCCcccccCHHHHHHHHHHhc
Confidence 3445567888667777777776665443
No 121
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.002 Score=68.41 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=43.5
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEe
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRV 711 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i 711 (716)
..|-||...+.+.|...|+|. ||..|+-..++. ...|++|...+.++..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk-~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQK-GEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhcccccc-CCcceecccccccccch
Confidence 469999999999999999999 999999887765 46899999998876543
No 122
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.03 E-value=3.4 Score=48.28 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=75.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHH---H-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005057 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKR---L-SEMENALRKASGQVDRANAAVRRLETENAEIR 474 (716)
Q Consensus 399 k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~kr---L-selE~el~k~~~qle~a~~~~~~Le~e~a~lr 474 (716)
-+++.=.||..=+..++-|.+++-. |..+...|...--+- | .-+|.++..++.-++-+.....+++.++..|+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~---L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~ 119 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRK---LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLR 119 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456666777666667666665543 444555554432111 1 23567777777777888788888888888888
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 475 AEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 475 ~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+.+.++....+.++.+..+-+.-+ .|+.-+..++.++...+.+++.++.++..++..
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~-------~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLD-------DYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH-------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777666655554433333 333333344444444444444444444444433
No 123
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.95 E-value=3.8 Score=47.85 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 005057 578 KLEALRLKIEIDFQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 578 k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~ 609 (716)
+....+.+.-.|++.+-|.-..|..||...+.
T Consensus 353 ~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 353 KMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 34455566667777777777778888877765
No 124
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.91 E-value=0.0033 Score=51.11 Aligned_cols=44 Identities=30% Similarity=0.717 Sum_probs=36.7
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..|..|......-+++||+|. .|..|-+-. +...||+|..+|..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChh---hccCCCCCCCcccC
Confidence 479999988888889999999 999997654 34689999999864
No 125
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.90 E-value=3.8 Score=45.61 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~ 477 (716)
++.+.-..+.++...+.+....++.|..+...|-.++
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr 160 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555554444333
No 126
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.89 E-value=3.9 Score=45.59 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 005057 377 TMLHQIKDLERQV 389 (716)
Q Consensus 377 ~l~~~~~~l~~~~ 389 (716)
+|.++++-+.-+|
T Consensus 78 di~~qlr~~rtel 90 (499)
T COG4372 78 DIRPQLRALRTEL 90 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 3445554444444
No 127
>PRK00106 hypothetical protein; Provisional
Probab=95.88 E-value=5 Score=47.03 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=5.4
Q ss_pred CCCCCCccccC
Q 005057 621 NTLPPGKLERA 631 (716)
Q Consensus 621 ~~Lp~~~~e~~ 631 (716)
-.||.+..++.
T Consensus 229 v~lp~demkGr 239 (535)
T PRK00106 229 VHLPDDNMKGR 239 (535)
T ss_pred EEcCChHhhcc
Confidence 34555555543
No 128
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.79 E-value=5.5 Score=46.58 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=46.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE 524 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~ 524 (716)
+...+..++.+++.+.........+...|+..++.++.+....-..+..+.+++.........++.++.+++.+|...+.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 33344444444444444555555555555555555555554444555566666666666777777777777777765544
Q ss_pred H
Q 005057 525 K 525 (716)
Q Consensus 525 K 525 (716)
.
T Consensus 359 ~ 359 (522)
T PF05701_consen 359 E 359 (522)
T ss_pred h
Confidence 4
No 129
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.78 E-value=2 Score=45.78 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcHHHHHHHH
Q 005057 380 HQIKDLERQVKERKEWAHQKA-------MQAARKLSNDLTELKMLR 418 (716)
Q Consensus 380 ~~~~~l~~~~~~~~~wa~~k~-------~qaa~~L~~~~~Elk~LR 418 (716)
+++.+++..|++|.+-...++ -++-.++.+-..||..|.
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988777 445556666666666666
No 130
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.78 E-value=5.8 Score=46.77 Aligned_cols=234 Identities=19% Similarity=0.263 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHHhHHHH--------HHHHHhhhhhHHHHH------
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQ-KAMQAARKLSNDLTELKMLRMEREET--------QRLKKGKQTLEDTTM------ 439 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~-k~~qaa~~L~~~~~Elk~LR~ekee~--------e~lkkekqeLEe~t~------ 439 (716)
+-.|-.++.+++.++....+|... --.+|..-|.+=..++..|+...+++ ..+-.++.+|.+.++
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g 242 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG 242 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence 446778888899888888888765 33444444444444445555433322 223334444444433
Q ss_pred ---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 ---------KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEK 510 (716)
Q Consensus 440 ---------krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ek 510 (716)
++|..++.++..+...+ .+..+...+..+..+..+++.+--....-..+...+.+.-......+....+
T Consensus 243 y~l~~~~i~~~i~~i~~~l~~~~~~L--~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~ 320 (560)
T PF06160_consen 243 YYLEHLDIEEEIEQIEEQLEEALALL--KNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKE 320 (560)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455555554444333 2334444555666666666655555555555666666666677777777777
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005057 511 QKAKLQEEIANEKEK----------IKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLE 580 (716)
Q Consensus 511 q~~~LqeEl~~~k~K----------I~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e 580 (716)
+...|..|++..++. ...+++++..+......+...+......=......++......++++.....-.+
T Consensus 321 ~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~ 400 (560)
T PF06160_consen 321 QNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINE 400 (560)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766544 4455555555444444443333332222222222222333333333322211111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 581 ALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 581 ~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.+. ....+..+.++.+..++..+...+...
T Consensus 401 ~l~-~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 401 SLQ-SLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111223334566666666666666554
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.77 E-value=6.6 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 373 EIVVTMLHQIKDLERQVKERKEWA 396 (716)
Q Consensus 373 e~~~~l~~~~~~l~~~~~~~~~wa 396 (716)
|.+.+|.--.++++..+.+|+-|.
T Consensus 256 E~d~~lq~sak~ieE~m~qlk~kn 279 (1265)
T KOG0976|consen 256 EQDMDLQASAKEIEEKMRQLKAKN 279 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666664
No 132
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.76 E-value=2.8 Score=43.05 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
--|.+|+..|.+++..+...-.....+++++..++.+.+.+...+......= --+..+..+.+....+.++..++.++
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~ 107 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQL 107 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999998888888888888888888888888876665554332210 11244555556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005057 520 ANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 520 ~~~k~KI~~le~el~qakq~~ 540 (716)
......+.++...+.+++...
T Consensus 108 ~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 108 DQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555554443
No 133
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.75 E-value=7.3 Score=47.67 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 005057 370 QKDEIVVTMLHQIKDLERQVKER 392 (716)
Q Consensus 370 ~k~e~~~~l~~~~~~l~~~~~~~ 392 (716)
+|+.=+..|..++.++.++..+.
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34545566777777777776665
No 134
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=95.74 E-value=1.4 Score=49.50 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHH
Q 005057 397 HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV-DRANAAVRRLETENAEIRA 475 (716)
Q Consensus 397 ~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~ql-e~a~~~~~~Le~e~a~lr~ 475 (716)
|+++.+-.+++.+|+..|+...++-++.+.....-++--.+..-.-.+||..+..+-.=. -+.....+.++.|++.+|.
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~ 316 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV 316 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Confidence 567788888999999999887776555433221111101111111123343333111000 0111122223334444554
Q ss_pred HHHHHhhhHHh--------H-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 476 EMEASKLSAAE--------S-VTTCLEVAKREK-KCLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 476 e~Ea~k~~a~e--------~-~~~~~e~~erek-k~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
+++.+..+.+. . +.-++-..+.|- ..-++.+..|+|+...++..++.+.|
T Consensus 317 ~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKK 376 (575)
T KOG4403|consen 317 ALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKK 376 (575)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 44444433322 1 222333444443 33467788888888888887777766
No 135
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=3.9 Score=50.24 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=7.9
Q ss_pred CCCCChhhHHH
Q 005057 365 TITDDQKDEIV 375 (716)
Q Consensus 365 ~v~~d~k~e~~ 375 (716)
-|||-+=.+|+
T Consensus 138 IV~QGkI~~La 148 (1200)
T KOG0964|consen 138 IVPQGKINELA 148 (1200)
T ss_pred EeechhhHHhh
Confidence 58888777665
No 136
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.62 E-value=0.0074 Score=65.09 Aligned_cols=51 Identities=27% Similarity=0.634 Sum_probs=40.4
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhccc-CCCCCCCCCccccce
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK-GKATCPCCRVPIEQR 708 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~-r~~~CP~CR~~i~~~ 708 (716)
+....|.||-....-+.++||+|. .|..|+.+...- ....||+||+.-..+
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 446789999999888999999999 999998774211 247899999865543
No 137
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.59 E-value=7.3 Score=46.55 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQD-------QKETESKWRQEQKAKELLLAQVEEERRSKEGAEAG-NKRKLE 580 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~-------~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~-~k~k~e 580 (716)
.++...++.++...+.+|....+++..+.+. ..++.+.+++....++.+..++-.-..-.+++... .+-+..
T Consensus 201 ~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~ 280 (617)
T PF15070_consen 201 QKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQ 280 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3334444444444444444444444433332 23344555555555555554442222222333211 111111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 581 ALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 581 ~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.. ..-.|++..+++|..+.++.+.|+...
T Consensus 281 ~E--~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 281 LE--MAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HH--HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11 112456667788888888888888754
No 138
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.58 E-value=2.5 Score=41.15 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
++..+++++|.+.....+.-...+..|+++........+.+.+.+.-+.+.+.
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie 55 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIE 55 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45567888888888777777777788888777777777766666555544443
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.58 E-value=4.3 Score=43.94 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
.+|++++.++..+..++ ..+..+.+|-.+...++.+...+.-++.+...-.++.+..-.+.+.....+-+..-.+++++
T Consensus 138 q~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ 216 (294)
T COG1340 138 QKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444322 23344455555555555555555554444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005057 520 ANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 520 ~~~k~KI~~le~el~qakq~ 539 (716)
-....++..+..+.-.+...
T Consensus 217 ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 217 VELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444433333
No 140
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0083 Score=63.20 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=38.6
Q ss_pred Cccccccccccccce-EEecCCCcccChhhHHHhcccC-CCCCCCCCccccce
Q 005057 658 CDRDCIICLKDEVSI-VFLPCAHQVLCASCSDNYGKKG-KATCPCCRVPIEQR 708 (716)
Q Consensus 658 ~~~~C~IC~~~~~~v-vllpCgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~~~ 708 (716)
.+.+|++|-+.+... ++.+|+|. +|+.|+....... .-+||.|..+....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred CCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcch
Confidence 356899999988665 45669999 9999999865431 24899999887643
No 141
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.53 E-value=4.4 Score=44.94 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 005057 594 KDDLQRLEQEFSR 606 (716)
Q Consensus 594 k~~l~~LekELe~ 606 (716)
+.++..++..++.
T Consensus 259 ~~~l~~~~~~l~~ 271 (423)
T TIGR01843 259 RERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 142
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.50 E-value=4.8 Score=43.90 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeE 518 (716)
.+++..|+.+-..++.+++.-......|..++..|+..--.+...+..-+..+ -...+++++.+.+++..|...
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i------sN~LlKkl~~l~keKe~L~~~ 99 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI------SNTLLKKLQQLKKEKETLALK 99 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555556666666777777666655555444333222 245566777777777777544
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHhhhHHHH---HHHHHHHHHH
Q 005057 519 IANEKEK-IKELQQCLARIQQDQKETESKWRQEQKA-KELLLAQVEEERR----SKEGAEAGNKRKL---EALRLKIEID 589 (716)
Q Consensus 519 l~~~k~K-I~~le~el~qakq~~~~~e~~~kqee~~-keea~~~~e~er~----erE~aE~~~k~k~---e~~~~KaE~E 589 (716)
.+....- ...|.+.+.++.....+++....++++. ...+..++....+ ....++.+.++|+ ..+....|.=
T Consensus 100 ~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~l 179 (310)
T PF09755_consen 100 YEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4332222 2334444444444444445555544332 2233333322221 1123333333442 2233333333
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
+-++..++..|+.+-..|+.+.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666554
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.35 E-value=6.6 Score=44.55 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=55.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 413 ELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 413 Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
.|+..+.+.++.++...+.+.--....+.|.++|.++..+..|+-.......+++..++.+...++.+.-+..++...+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La 118 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444433445567788888888888888888888888888888888888877766655544444
Q ss_pred HHHH
Q 005057 493 EVAK 496 (716)
Q Consensus 493 e~~e 496 (716)
++..
T Consensus 119 ~~L~ 122 (420)
T COG4942 119 EQLA 122 (420)
T ss_pred HHHH
Confidence 4433
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.35 E-value=1.3 Score=48.38 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=38.2
Q ss_pred HHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 405 RKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 405 ~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
++|.++..-|.+|..+-|.-+.-..+.+.+.++-+.|...|......+.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888889999999888888888888887777777777766654443
No 145
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.0071 Score=67.87 Aligned_cols=49 Identities=29% Similarity=0.737 Sum_probs=39.1
Q ss_pred Ccccccccccc-----------------ccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKD-----------------EVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~-----------------~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|+||+.. .++-.++||.|. |=..|..+|+....-.||.||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45789999962 123457899999 99999999988655689999998764
No 146
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.19 E-value=5.3 Score=44.32 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhc
Q 005057 588 IDFQRHKDDLQRLEQEFSRLKASAE 612 (716)
Q Consensus 588 ~E~qr~k~~l~~LekELe~Lk~k~~ 612 (716)
.++.....++..++.++..++...+
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556677788888887776543
No 147
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.19 E-value=0.0046 Score=66.60 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=42.8
Q ss_pred ccccccccccccceEE-ecCCCcccChhhHHHhcccCCCCCCCCCccccceEE
Q 005057 659 DRDCIICLKDEVSIVF-LPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIR 710 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvl-lpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~ 710 (716)
-..|.+|..-..++.. +-|-|. ||..|+..+... ...||.|...|.+...
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~-~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEE-SKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHH-hccCCccceeccCccc
Confidence 4689999999988664 559999 999999999887 7899999998877653
No 148
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.15 E-value=0.016 Score=51.30 Aligned_cols=35 Identities=29% Similarity=0.711 Sum_probs=29.4
Q ss_pred ceEEecCCCcccChhhHHHhccc--CCCCCCCCCcccc
Q 005057 671 SIVFLPCAHQVLCASCSDNYGKK--GKATCPCCRVPIE 706 (716)
Q Consensus 671 ~vvllpCgH~vfC~~C~~~~~~~--r~~~CP~CR~~i~ 706 (716)
.+++-.|+|. |-..|+..|..+ ....||+||.++.
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3467789999 999999999876 3578999999875
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.09 E-value=3.1 Score=39.77 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
...+.....++.+++... ..+.++...=...+.....-=+.+..+++++...+..|..+..+...++......
T Consensus 20 ~~~~~~~~~~~~dl~~q~-------~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQA-------KIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 3333343333333344444455566777777777888888888888888777777
Q ss_pred HHHHHHHHHHHHH
Q 005057 544 ESKWRQEQKAKEL 556 (716)
Q Consensus 544 e~~~kqee~~kee 556 (716)
+..|..++...++
T Consensus 93 e~sw~~qk~~le~ 105 (132)
T PF07926_consen 93 EASWEEQKEQLEK 105 (132)
T ss_pred HHhHHHHHHHHHH
Confidence 7888877665554
No 150
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.08 E-value=9.6 Score=44.93 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=53.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSAAES-----VTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 451 k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~-----~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
=....++.|+..+..|+++++.|+.+....+-....- .+.-...-.+++-...-....+...+-+.+++++.+..
T Consensus 239 lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q 318 (629)
T KOG0963|consen 239 LIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444558888899999999999988887655332211 11111111122222222333444444555666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 005057 526 IKELQQCLARIQQDQKETESK 546 (716)
Q Consensus 526 I~~le~el~qakq~~~~~e~~ 546 (716)
|+.+++++......++++..+
T Consensus 319 I~~le~~l~~~~~~leel~~k 339 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEK 339 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555444433
No 151
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.04 E-value=0.0051 Score=72.05 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=38.4
Q ss_pred ccccccccccccceE---EecCCCcccChhhHHHhcccCCCCCCCCCccccceEE
Q 005057 659 DRDCIICLKDEVSIV---FLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIR 710 (716)
Q Consensus 659 ~~~C~IC~~~~~~vv---llpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~ 710 (716)
...|++|+....+-. -.+|+|. ||..|+..|... ..+||+||..|..++.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRC-AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhh-cccCchhhhhhheeee
Confidence 357888876554432 2689999 999999999766 5699999999877643
No 152
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.90 E-value=10 Score=47.04 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.1
Q ss_pred ccC-cCCCCChhhHHH
Q 005057 361 ENL-ETITDDQKDEIV 375 (716)
Q Consensus 361 ~~~-~~v~~d~k~e~~ 375 (716)
.|| .|.|||+=.|.+
T Consensus 141 ~NLCqFLpQDkV~EFa 156 (1072)
T KOG0979|consen 141 DNLCQFLPQDKVKEFA 156 (1072)
T ss_pred CchhhhccHHHHHHHH
Confidence 577 999999988743
No 153
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.84 E-value=6 Score=41.41 Aligned_cols=97 Identities=23% Similarity=0.303 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
-.|.+|+..+.+++..+...-.....+++++..+....+.+...+...-..=. -+..+.-+.+.+.+|.+...++.++
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999888877665544332111 2234444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 520 ~~~k~KI~~le~el~qakq 538 (716)
..+...+..+..++..+.+
T Consensus 109 ~~~~~~~~~l~~~~~~Le~ 127 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQ 127 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444444444443333
No 154
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.83 E-value=2.6 Score=44.88 Aligned_cols=120 Identities=28% Similarity=0.342 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005057 389 VKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLET 468 (716)
Q Consensus 389 ~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~ 468 (716)
+.||+|=-.-+|+|-..-|+..+..|+.-|.+ ....|..+|.+|.|.+..+
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQ-----------------rQfQleSlEAaLqKQKqK~------------ 55 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQLDKLKKERQQ-----------------RQFQLESLEAALQKQKQKV------------ 55 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHHH------------
Confidence 34666666666666554444443333322211 1244556666665555333
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 469 ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 469 e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+.-+.+.-+++++-......|..+.+.-++..-+++.-|.|+.-|..++..++..|..+++++...+..
T Consensus 56 --e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 56 --EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred --HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333444444444555566666677777778888888888888888888888888888887776655
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.78 E-value=3.2 Score=50.33 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 436 DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKL 515 (716)
Q Consensus 436 e~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~L 515 (716)
+...++|.++++++..++.-.++...++.+.....+.|.+.++..-..+... .-..++-|++-.+.+..+..++..|
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~---~P~LS~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQ---LPVLSEAEREFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543333333344444444444444444332222110 1123444555556666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 005057 516 QEEIANEKEKIKELQQ 531 (716)
Q Consensus 516 qeEl~~~k~KI~~le~ 531 (716)
+.-++..+.|+...+.
T Consensus 652 ~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 652 KASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555433
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.77 E-value=7.3 Score=41.97 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHHHH-HhhhHHhHHHHHHHHHHHHHHHHH
Q 005057 431 KQTLEDTTMKRLSEMENALRKASGQVD------RANAAVRRLETENAEIRAEMEA-SKLSAAESVTTCLEVAKREKKCLK 503 (716)
Q Consensus 431 kqeLEe~t~krLselE~el~k~~~qle------~a~~~~~~Le~e~a~lr~e~Ea-~k~~a~e~~~~~~e~~erekk~~k 503 (716)
.+.|.+.-.+.-..++.++..++.++. ........|......++.+++. +.....+.+..|+.-...-+.
T Consensus 126 i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~--- 202 (312)
T PF00038_consen 126 IQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ--- 202 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc---
Confidence 333333333333445555555555552 2222234566677778888773 223333444444433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQ 549 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kq 549 (716)
...........++.|+...+.+|..++.++..++.....++.....
T Consensus 203 ~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 203 QSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 2222334445556666666666666666666555554444444433
No 157
>PF13514 AAA_27: AAA domain
Probab=94.64 E-value=19 Score=46.07 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=42.8
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHH
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQVKERK----EWA--HQKAMQAARKLSNDLTELKMLRMEREETQRLKK 429 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~~~~~~----~wa--~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkk 429 (716)
-|-|. -+.-.|-.++.++++++.++++.. +|. .+.+-++..++..-..+++.++.+....+++..
T Consensus 142 Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~ 212 (1111)
T PF13514_consen 142 LFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRR 212 (1111)
T ss_pred hhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67787 555567788888888888888764 343 233455555666666666666666666666544
No 158
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.55 E-value=17 Score=45.17 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCh
Q 005057 77 EEILLKNLEFLYNEAISKLVALGYDE 102 (716)
Q Consensus 77 ~~~LL~~I~~~Y~~Al~rLp~~~~~~ 102 (716)
.++++.+|..||..++..|... ++.
T Consensus 4 ~~~~vR~~ke~~ee~lgqli~~-lpd 28 (1195)
T KOG4643|consen 4 FECVVRNMKETDEEGLGQLIIE-LPD 28 (1195)
T ss_pred HHHHHHHHHHHHHHhccceeEe-cCc
Confidence 3567777888888887777665 443
No 159
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.51 E-value=17 Score=45.25 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=12.7
Q ss_pred ccccccccCCCccccC--cCCCCC
Q 005057 348 DSVLSKMRDLNIDENL--ETITDD 369 (716)
Q Consensus 348 ~~~~~~~~~~~~d~~~--~~v~~d 369 (716)
+..+...-+++||.=. .++||-
T Consensus 120 ~~~i~~llgld~~~f~~~v~l~QG 143 (908)
T COG0419 120 NEKIEELLGLDKDTFTRSVYLPQG 143 (908)
T ss_pred HHHHHHHhCCCHHHHhHHheeccH
Confidence 3345556666666433 677765
No 160
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.49 E-value=8.1 Score=41.27 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=12.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
..++++.|..++.++..|+...
T Consensus 195 i~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555443
No 161
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=18 Score=44.81 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAK 514 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~ 514 (716)
+++...+|-++..+..|++.....-......+..+..+++-.+.++.+...-|..+.+.+....+++..++.+...
T Consensus 299 ~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 299 SKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556666766766666665444333334444555555566666666666677777777777777777777765443
No 162
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.25 E-value=20 Score=44.79 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=27.4
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 005057 372 DEIVVTMLH-QIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLR 418 (716)
Q Consensus 372 ~e~~~~l~~-~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR 418 (716)
++-+..+.. ++..|+.++.. ..|+..- .+-...|.+++.++....
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l-~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAEL-REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444555555 88888888884 4444444 566666666665555555
No 163
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.25 E-value=14 Score=43.03 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=71.1
Q ss_pred HHHHHHhhhcHHHHHHHHHhHHHHHHH--------HHhhhhhHHHHHHHH--------HHHHHHHHHhhhHHHHH-----
Q 005057 401 MQAARKLSNDLTELKMLRMEREETQRL--------KKGKQTLEDTTMKRL--------SEMENALRKASGQVDRA----- 459 (716)
Q Consensus 401 ~qaa~~L~~~~~Elk~LR~ekee~e~l--------kkekqeLEe~t~krL--------selE~el~k~~~qle~a----- 459 (716)
+||+.-|..-...+..|+.-.+++=.+ -.+++.|....|+-+ -+++.++.+++.++...
T Consensus 193 ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~ 272 (570)
T COG4477 193 IEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLT 272 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHH
Confidence 788888887778888888766555333 235566666555332 23444455555444221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 005057 460 NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK----------IKEL 529 (716)
Q Consensus 460 ~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K----------I~~l 529 (716)
.....+.+.++..+...++..=--...-..+...+.+.-.-....+.........|++|++..++. +...
T Consensus 273 ~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~ 352 (570)
T COG4477 273 QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKF 352 (570)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 122233344555555554432222111122222233333333344555555556666666665544 4555
Q ss_pred HHHHHHHHHhhHHH
Q 005057 530 QQCLARIQQDQKET 543 (716)
Q Consensus 530 e~el~qakq~~~~~ 543 (716)
++++..+.+...++
T Consensus 353 e~eL~el~~~~~~i 366 (570)
T COG4477 353 EKELKELESVLDEI 366 (570)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 164
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.21 E-value=0.013 Score=60.52 Aligned_cols=44 Identities=41% Similarity=0.956 Sum_probs=35.8
Q ss_pred cccccccccc---ccc--eEEec-CCCcccChhhHHHhcccCCCCCC--CCCc
Q 005057 659 DRDCIICLKD---EVS--IVFLP-CAHQVLCASCSDNYGKKGKATCP--CCRV 703 (716)
Q Consensus 659 ~~~C~IC~~~---~~~--vvllp-CgH~vfC~~C~~~~~~~r~~~CP--~CR~ 703 (716)
+..|+||... ..+ ..+-| |.|. +|.+|++++..+|...|| .|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 5689999863 233 34456 9999 999999999999999999 7875
No 165
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=93.98 E-value=5.8 Score=44.49 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=44.0
Q ss_pred ccCcCCCCChhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhh
Q 005057 361 ENLETITDDQKDE-----IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQ 432 (716)
Q Consensus 361 ~~~~~v~~d~k~e-----~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekq 432 (716)
-...|.|+|.--- +-.-|| +.+|-=--||++|+|-||-|.-.-..-+.--.-|...|+|-++.+..=.+++
T Consensus 98 pt~~w~~ddpDi~~~l~gvnSGLv-rAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk 173 (558)
T PF15358_consen 98 PTPPWAPDDPDITELLEGVNSGLV-RAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLK 173 (558)
T ss_pred CCCCCCCCCccHHHHHhhhcccce-ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3337888876542 344566 8888889999999999999843333322222334455666666554444433
No 166
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.76 E-value=6.5 Score=41.67 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005057 382 IKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALR 450 (716)
Q Consensus 382 ~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~ 450 (716)
++|+-.|+++.+---.-.|||+.+-|..=---+--+ |+|.+ .++|.++|.+..++|.
T Consensus 145 mqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~--------rlK~e----le~tk~Klee~Qnels 201 (330)
T KOG2991|consen 145 MQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFL--------RLKGE----LEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHH--------HHHHH----HHHHHHHHHHHHhhhh
Confidence 344445555555444455677765554322222222 22222 2345566666666654
No 167
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=22 Score=43.42 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHH
Q 005057 421 REETQRLKKGKQTLED---TTMKRLSEMENALRK 451 (716)
Q Consensus 421 kee~e~lkkekqeLEe---~t~krLselE~el~k 451 (716)
..+++++.|++++|++ ..+|+|..+|.++..
T Consensus 669 ~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~ 702 (988)
T KOG2072|consen 669 ARQIEELEKERKELQSRLQYQEKKIDHLERAKRL 702 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666666666664 456788888877654
No 168
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.63 E-value=9.6 Score=39.03 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+.+..+..++..++.|...++.---.+++++.++-.-+.....-+.....++..|++.+-..+.+...+++.+.+....
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~e 97 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666677777777777776666777777777777777777777777777777777777666655555555443333
No 169
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.62 E-value=20 Score=42.72 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHh
Q 005057 594 KDDLQRLEQEFSRLK 608 (716)
Q Consensus 594 k~~l~~LekELe~Lk 608 (716)
.-++..|+..|+...
T Consensus 577 ~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 577 SREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334555555555443
No 170
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.60 E-value=13 Score=40.41 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVD---RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK 496 (716)
Q Consensus 439 ~krLselE~el~k~~~qle---~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~e 496 (716)
-.++.++=..+..+....+ ...-.+..+++++..|+......-+.-.+--..++++.+
T Consensus 82 n~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~ 142 (294)
T COG1340 82 NAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE 142 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 3444444444444443333 223345566666666666666555555554444555444
No 171
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.58 E-value=19 Score=42.26 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 578 KLEALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 578 k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
+.+..+..+|.+..+.+.++..|++++..++...
T Consensus 475 ~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 475 KYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666777778888777776654
No 172
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.58 E-value=21 Score=42.72 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA-ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~-e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeE 518 (716)
.++.-+|.+-..++.---.-++-++++......||-+.++-+++.- +.-..+..+...+.+.-+.....|+|++.|+-.
T Consensus 169 EK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q 248 (786)
T PF05483_consen 169 EKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQ 248 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4445556655555533344556788888899999999998888885 777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 519 IANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 519 l~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
+.+-..+|..+.-.+.+.+....+++..-+...+...++....+....+.+.+.
T Consensus 249 ~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K 302 (786)
T PF05483_consen 249 LKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIK 302 (786)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 999888888888887777777666665544443333333333333334444333
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.51 E-value=14 Score=40.55 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=47.8
Q ss_pred CCCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 005057 366 ITDDQKDEIVV--TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLS 443 (716)
Q Consensus 366 v~~d~k~e~~~--~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLs 443 (716)
.|+|.|.-|.. .||+.---|+.. +.|=||..+-+--.-..| ...+.
T Consensus 107 a~~d~r~lm~~Qf~lvK~~aRl~ak-~~WYeWR~kllegLk~~L-------------------------------~~~~~ 154 (312)
T smart00787 107 ASPDVKLLMDKQFQLVKTFARLEAK-KMWYEWRMKLLEGLKEGL-------------------------------DENLE 154 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 35666666543 345555555543 689999876543332222 22233
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
.|......+..+++..+..+..+......|+.+...++....
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444445555555666666666666666666665544333
No 174
>PRK01156 chromosome segregation protein; Provisional
Probab=93.50 E-value=26 Score=43.54 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=17.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 005057 368 DDQKDEIVVTMLHQIKDLERQVKERK 393 (716)
Q Consensus 368 ~d~k~e~~~~l~~~~~~l~~~~~~~~ 393 (716)
++.+++++..+-.++.+++.++++=.
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIE 489 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777776666544
No 175
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.43 E-value=11 Score=45.82 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005057 393 KEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLET 468 (716)
Q Consensus 393 ~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~ 468 (716)
.+|=.+.+-+..++|..--.++...|.++.-... + -+.-...+|.+++.++..++.+...+...+..++.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~---~---~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG---N---NATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---C---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444443332210 0 01112256777777777777666555555555443
No 176
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.41 E-value=10 Score=38.76 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Q 005057 376 VTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQ 455 (716)
Q Consensus 376 ~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~q 455 (716)
-+|=.++.-|+.++-.|-+-. --+. ..|.-+.+..++.++-.|=+..--..-..++..+|.++..++.-
T Consensus 7 a~lnrri~~leeele~aqErl----~~a~-------~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~i 75 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERL----ATAL-------QKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHI 75 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456677888888887776532 2222 22233334455555554322222222335677788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 456 VDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 456 le~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~q 535 (716)
.+.++.+|.+--++..-+..++|.+...+.-.+.-|.++ +.+...+...+.....+-..+.+....
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eL--------------eEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEEL--------------EEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 788999999999999999999987665555444444433 333333333333333333333333333
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 536 IQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 536 akq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
....++.+..++++.+..-+-+-+.|....++++.+|
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE 178 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLE 178 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHH
Confidence 3333444445555554444444455555666666665
No 177
>PTZ00121 MAEBL; Provisional
Probab=93.22 E-value=35 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005057 380 HQIKDLERQVKERKEWAHQKA 400 (716)
Q Consensus 380 ~~~~~l~~~~~~~~~wa~~k~ 400 (716)
.+..+.+++..+-+--|..|+
T Consensus 1563 ~kk~eekr~aeE~k~~a~rka 1583 (2084)
T PTZ00121 1563 KKKAEEAKKAEEDKNMALRKA 1583 (2084)
T ss_pred HHHHHHHHHHhhhhhhhhhhH
Confidence 444455555555555554444
No 178
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.08 E-value=11 Score=41.42 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005057 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (716)
Q Consensus 434 LEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e 486 (716)
|-+.-...+..|......+...++..+..+.++....+.|..+...++....+
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444456667777777777777777777788888888888777766654443
No 179
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.02 E-value=19 Score=40.67 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.2
Q ss_pred ChhhHHHH-HHHHHHHHHHHH
Q 005057 369 DQKDEIVV-TMLHQIKDLERQ 388 (716)
Q Consensus 369 d~k~e~~~-~l~~~~~~l~~~ 388 (716)
.+-+|.|. +|++.++-|+++
T Consensus 95 eqeeEfisntLlkkiqal~ke 115 (552)
T KOG2129|consen 95 EQEEEFISNTLLKKIQALFKE 115 (552)
T ss_pred chHHHHHHHHHHHHHHHhhcc
Confidence 34567787 888888877654
No 180
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.00 E-value=9.5 Score=37.14 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 521 NEKEKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 521 ~~k~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
.+..+|..+++++.++....++...+.++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555544444444433
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=7.7 Score=45.66 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKR---EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~er---ekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+|+.+|..|+.+.+..+.+..+...-+.++.++ +...-..+..++..+..|+.+|.+.+.++.+|+..++++++-
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333 233335667788888899999999999999999888887744
No 182
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.98 E-value=16 Score=45.69 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHhHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 005057 416 MLRMEREETQRLKKGKQTLEDT-----TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (716)
Q Consensus 416 ~LR~ekee~e~lkkekqeLEe~-----t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~ 490 (716)
.++-..+++++|+.++...-+- ..++...+|.+......+ +.+++.+...++.++....-...-+...
T Consensus 405 llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~-------ieele~el~~~~~~l~~~~e~~~~~~~~ 477 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQ-------IEELEEELENLEKQLKDLTELYMNQLEI 477 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555666777777666554433 113333444444333322 2334444444444433333222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKI 526 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI 526 (716)
+..+.++-.+...+++.-.++...+++++.+.+..|
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 183
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=6.1 Score=44.86 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
+.-=|.-+++|+..+.....++-.+-++|...++..
T Consensus 288 l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pl 323 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPL 323 (521)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333445566777777777777777777777776663
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.89 E-value=17 Score=44.07 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 493 EVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 493 e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
++...-....+....+|.|+..|++|+.++|.+
T Consensus 59 rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 59 RLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455666677777777777766655
No 185
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.86 E-value=1.8 Score=43.86 Aligned_cols=37 Identities=22% Similarity=0.488 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
.++.|+...+-....+++.+..++...+++..+|-+.
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666677777777665
No 186
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.84 E-value=0.083 Score=56.05 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCccccccccccc----cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 657 NCDRDCIICLKDE----VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 657 ~~~~~C~IC~~~~----~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
.....|+|+...+ .-++|.||||+ ||..|+..+. ....||+|..+|...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc--ccccccccCCccccC
Confidence 4457899998754 45778899999 9999999984 235799999999653
No 187
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.77 E-value=37 Score=43.38 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE 524 (716)
Q Consensus 463 ~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~ 524 (716)
.-.|+.|.+.++.+.+..+.+.........=...+..-..++++..|.+++.||+.++..+.
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444333322222222233334444455555555555554433
No 188
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.76 E-value=13 Score=39.39 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=10.0
Q ss_pred HhhhcHHHHHHHHHhHHHH
Q 005057 406 KLSNDLTELKMLRMEREET 424 (716)
Q Consensus 406 ~L~~~~~Elk~LR~ekee~ 424 (716)
+|.....++..++.+++..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l 39 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 189
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.72 E-value=0.071 Score=42.46 Aligned_cols=43 Identities=30% Similarity=0.788 Sum_probs=21.5
Q ss_pred cccccccc--cceEEec--CCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 662 CIICLKDE--VSIVFLP--CAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 662 C~IC~~~~--~~vvllp--CgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
|++|.+.. .+..|.| |+++ +|..|-..........||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56676543 4444555 7888 999999988765567899999875
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.72 E-value=13 Score=38.11 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK 523 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k 523 (716)
-|+..|..+..++..+...+...+.....++.+++.+...+.+.......+.+.....+.+.... ++..+..++...+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~--~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQ--RKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555544444444444444433222 2224444455555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005057 524 EKIKELQQCLARIQQDQKETESKWRQEQKAKELLLA 559 (716)
Q Consensus 524 ~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~ 559 (716)
..+.+...++.+++.....++.+..+.+..+..+.+
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444444333
No 191
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.69 E-value=28 Score=41.71 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005057 545 SKWRQE--QKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLK 585 (716)
Q Consensus 545 ~~~kqe--e~~keea~~~~e~er~erE~aE~~~k~k~e~~~~K 585 (716)
.+.+|+ .+....+..+++..|......|....+|+...+..
T Consensus 571 nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~E 613 (961)
T KOG4673|consen 571 NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGE 613 (961)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 33344555667777777766666666665554443
No 192
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.61 E-value=7.8 Score=37.59 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 005057 595 DDLQRLEQEFSRLKAS 610 (716)
Q Consensus 595 ~~l~~LekELe~Lk~k 610 (716)
-++++-+.|+++|+..
T Consensus 133 ~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 133 HELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555543
No 193
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.54 E-value=0.066 Score=58.00 Aligned_cols=44 Identities=34% Similarity=0.868 Sum_probs=35.4
Q ss_pred ccccccccccccceEEecC--CCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 659 DRDCIICLKDEVSIVFLPC--AHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpC--gH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
-.+|+||.+.-.-.++ .| ||. .|..|-... ...||.||.+|..+
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~----~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKV----SNKCPTCRLPIGNI 93 (299)
T ss_pred hccCchhhccCcccce-ecCCCcE-ehhhhhhhh----cccCCccccccccH
Confidence 4689999977666654 68 799 999998765 46899999999854
No 194
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.53 E-value=0.054 Score=60.83 Aligned_cols=52 Identities=27% Similarity=0.545 Sum_probs=43.9
Q ss_pred CccccccccccccceEE-ecCCCcccChhhHHHhcccCCCCCCCCCccccceEEe
Q 005057 658 CDRDCIICLKDEVSIVF-LPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRV 711 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvl-lpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i 711 (716)
.+..|.+|..-..+.+. ..|||. ||..|+..+... ...||.|+..+.....+
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhcc-CcCCcccccccchhhcc
Confidence 46799999998888887 499999 999999998877 67999999887665444
No 195
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.47 E-value=6.8 Score=41.90 Aligned_cols=122 Identities=23% Similarity=0.350 Sum_probs=79.2
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHH---
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAAR---KLSNDLTELKMLRMEREETQRLKKGKQTLEDT--- 437 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~---~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~--- 437 (716)
-|+-.+=||=|--.-++.|++|+.||..-+-=.+||.+|.-. .|.|...... .++-+.-.++.+.+-|-+.
T Consensus 2 SWa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e---~ek~e~s~LkREnq~l~e~c~~ 78 (307)
T PF10481_consen 2 SWAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE---EEKNEYSALKRENQSLMESCEN 78 (307)
T ss_pred cchHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhhhhhhhhhhhhhHHHHHHH
Confidence 377777788888888899999999999988888888876421 1221111111 1222333344444433322
Q ss_pred ---HHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 005057 438 ---TMKRL----SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV 488 (716)
Q Consensus 438 ---t~krL----selE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~ 488 (716)
++.+| ---|..+.=+-+|+..+--.+++|+.++..++.++|.....+....
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33333 3346666667777788888889999999999999998777666433
No 196
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.43 E-value=9.2 Score=40.51 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEV 494 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~ 494 (716)
+.||..||.+..++...+..+..+...|+.+...++.+.+.+..++.+.+...+++
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888777777777777777777777666666665555555444444433
No 197
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.36 E-value=18 Score=43.72 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHHhhCCC
Q 005057 162 QLEEYSLAGMVCLLQQVRPH 181 (716)
Q Consensus 162 ~i~~rSL~gLVafL~~~~P~ 181 (716)
.|=++-++=||+.+...+|+
T Consensus 427 aiYSkLFD~lV~~iNqsiPF 446 (1259)
T KOG0163|consen 427 AIYSKLFDWLVGRINQSIPF 446 (1259)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 34455577778877777776
No 198
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.26 E-value=9 Score=44.18 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=50.2
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005057 474 RAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKA 553 (716)
Q Consensus 474 r~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~ 553 (716)
-++..-.+..+......++...+.-.........++.|+..+++++..+......+.+-|...+.+++++.+..++++..
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333344433333333333333334444555556666666666666666666667777777777777777777776655
Q ss_pred HHHHHHHH
Q 005057 554 KELLLAQV 561 (716)
Q Consensus 554 keea~~~~ 561 (716)
-.|.+...
T Consensus 284 yAE~m~~~ 291 (596)
T KOG4360|consen 284 YAECMQML 291 (596)
T ss_pred HHHHHHHH
Confidence 55544443
No 199
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.11 Score=54.12 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=40.3
Q ss_pred Cccccccccccc----cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 658 CDRDCIICLKDE----VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 658 ~~~~C~IC~~~~----~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
....|+||.+.- ..+++-||||+ ||..|++.++.. ...||+|..+....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~-D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRK-DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccc-cccccCCCCcCccc
Confidence 356899999854 45789999999 999999999876 45899999988653
No 200
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.21 E-value=0.048 Score=61.87 Aligned_cols=47 Identities=23% Similarity=0.723 Sum_probs=38.7
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhc----ccCCCCCCCCCccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYG----KKGKATCPCCRVPI 705 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~----~~r~~~CP~CR~~i 705 (716)
....|.+|.+.-.+.+...|.|. ||.-|+..+. .....+||.|..+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 35689999999999999999999 9999996654 33347899998754
No 201
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.09 E-value=33 Score=41.16 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005057 392 RKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENA 471 (716)
Q Consensus 392 ~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a 471 (716)
-+.--+.+=|+ ..-|.+++++-..|-.++...++...+++.-+..--..|...|.++..+..++...-..-+.--..+.
T Consensus 396 mtk~k~~ke~e-leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVe 474 (786)
T PF05483_consen 396 MTKQKNNKEVE-LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVE 474 (786)
T ss_pred HHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444455 34466666666666666667777777776666555566666677777666666554445555555667
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 472 EIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 472 ~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
.++.+++..++.-.+....|.+++---+........+--++-.+++.+...+.+
T Consensus 475 eLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~q 528 (786)
T PF05483_consen 475 ELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQ 528 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777777766666666666555444444444444444444555555554444
No 202
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.07 E-value=19 Score=38.30 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHH---HHHHH
Q 005057 373 EIVVTMLHQIKDLERQVKERKEWAHQ-------KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT---TMKRL 442 (716)
Q Consensus 373 e~~~~l~~~~~~l~~~~~~~~~wa~~-------k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~---t~krL 442 (716)
++.+.+.....+|+.+|.|+-+=-.+ .+.|+-.|+-+-.++.+.|++|.+-+ |+++ |.+ --+.+
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~----Kek~--e~q~~q~y~q~ 93 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERN----KEKQ--EDQRVQFYQQE 93 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHHH
Confidence 36667777777788787777653322 23456666666666777777665542 2222 222 22667
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (716)
Q Consensus 443 selE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~ 477 (716)
+.||..+..++.+.+...-.+++||+.|..|+...
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 88999999888888888888999998888776543
No 203
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.073 Score=59.09 Aligned_cols=34 Identities=38% Similarity=0.959 Sum_probs=28.3
Q ss_pred Ccccccccccccc---ceEEecCCCcccChhhHHHhcc
Q 005057 658 CDRDCIICLKDEV---SIVFLPCAHQVLCASCSDNYGK 692 (716)
Q Consensus 658 ~~~~C~IC~~~~~---~vvllpCgH~vfC~~C~~~~~~ 692 (716)
....|.||++... ..+++||+|+ ||..|...+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHHHH
Confidence 3568999999764 4789999999 99999988653
No 204
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.03 E-value=17 Score=37.71 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 467 ETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 467 e~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
..++..+..+.+.+.-.+...+++|-.+..+=.+.-.-+..+-+.-..|+..+.+...+|..+++
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eq 132 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQ 132 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555544444433444433444444444444444444443
No 205
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.76 E-value=28 Score=39.61 Aligned_cols=111 Identities=23% Similarity=0.199 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAK---ELLLAQVEEERRSKEGAEAGNKR 577 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~k---eea~~~~e~er~erE~aE~~~k~ 577 (716)
+.++.+.+|.+...|+..+...+..+..+..+.+.....+.-+-.+...+++.. ...+.+.+.++.+..++-...+.
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrk 381 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRK 381 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446777777777777777777777777766666555555444444443333333 34555666666666655444333
Q ss_pred HHHH-HHHHHHHHHh-hh--hHHHHHHHHHHHHHhhhh
Q 005057 578 KLEA-LRLKIEIDFQ-RH--KDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 578 k~e~-~~~KaE~E~q-r~--k~~l~~LekELe~Lk~k~ 611 (716)
.++. ..++-+.+.. +- -.+.-.|++++++|+...
T Consensus 382 elehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~n 419 (502)
T KOG0982|consen 382 ELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcccc
Confidence 3332 2223333211 11 123446788888888764
No 206
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.76 E-value=0.066 Score=63.90 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=38.2
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccCC-CCCCCCCcccc
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGK-ATCPCCRVPIE 706 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~-~~CP~CR~~i~ 706 (716)
..|.+|.+ ...+++++|+|. ||.+|....+.... ..||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 58999999 888899999999 99999999876633 36999997653
No 207
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.74 E-value=32 Score=40.33 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.6
Q ss_pred CCCCCCccccC
Q 005057 621 NTLPPGKLERA 631 (716)
Q Consensus 621 ~~Lp~~~~e~~ 631 (716)
-.||.+..++.
T Consensus 208 v~lp~d~~kgr 218 (514)
T TIGR03319 208 VNLPNDEMKGR 218 (514)
T ss_pred EEcCChhhhcc
Confidence 34555555543
No 208
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.73 E-value=0.039 Score=67.79 Aligned_cols=159 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHH
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTM---KRLSEMENALRK 451 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~---krLselE~el~k 451 (716)
|..|-..+.|.+..+....|-+...++|++ +|. .-|+.+++....+-+.++.||.+.. .||.++|....+
T Consensus 667 i~~l~~eleE~~~~~~~~~ek~kka~~~~~-~l~------~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~ 739 (859)
T PF01576_consen 667 IQQLEEELEEEQSEAEAAEEKAKKAQAQAA-QLA------EELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK 739 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455666677777777777777777777776 222 3355666777777777888877755 677777765433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 452 ~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
.....+..|+..+.+|..+++...+...+..+.+++.-++-+....+...=-++...+++.+..+..||..+.+
T Consensus 740 ------~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~kr 813 (859)
T PF01576_consen 740 ------GGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKR 813 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22356788888888999999988888888888877766666665555555555566777888888888888877
Q ss_pred HHHHHHHhhHHHHHH
Q 005057 532 CLARIQQDQKETESK 546 (716)
Q Consensus 532 el~qakq~~~~~e~~ 546 (716)
++.++.........+
T Consensus 814 q~eeaEe~~~~~~~k 828 (859)
T PF01576_consen 814 QLEEAEEEASRNLAK 828 (859)
T ss_dssp ---------------
T ss_pred hhhhHHHHHHHHHHH
Confidence 777665553333333
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.73 E-value=24 Score=38.80 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
.+.|+..+...|++...++.+++.+++++
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 210
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.44 E-value=14 Score=39.16 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=13.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k 610 (716)
.++++++|+.|..+|+.++-.
T Consensus 184 nk~lq~QL~~L~~EL~~~kde 204 (246)
T PF00769_consen 184 NKRLQEQLKELKSELEQLKDE 204 (246)
T ss_dssp -HHHHHHHHHHHHHHHTTB-C
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 445677777788777777654
No 211
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.13 E-value=8.7 Score=34.83 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=50.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 482 LSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 482 ~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+.+..+++|++..+...+.++++..+|..+.++..|+..++++.....+....+...
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677888999999999999999999999999999999999999988877765544433
No 212
>PRK12704 phosphodiesterase; Provisional
Probab=90.90 E-value=39 Score=39.72 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.9
Q ss_pred CCCCCCccccC
Q 005057 621 NTLPPGKLERA 631 (716)
Q Consensus 621 ~~Lp~~~~e~~ 631 (716)
-.||.+..++.
T Consensus 214 v~lp~d~mkgr 224 (520)
T PRK12704 214 VNLPNDEMKGR 224 (520)
T ss_pred eecCCchhhcc
Confidence 34566555544
No 213
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.88 E-value=15 Score=35.01 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
..-.+|+.++..|..++...+.++..|..+..
T Consensus 91 ~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 91 ESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888888888888888888877654
No 214
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.87 E-value=52 Score=41.15 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005057 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESK 546 (716)
Q Consensus 486 e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~ 546 (716)
.....|.++..+-+.....+...++.+..++.+++.++.+-...+..+.+++..+...++.
T Consensus 294 ~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 294 QKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555555566666666666666666666666666555555555555554444333
No 215
>PTZ00121 MAEBL; Provisional
Probab=90.74 E-value=64 Score=41.97 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=7.5
Q ss_pred ccCCCccccCC
Q 005057 270 DIECPKRFNLS 280 (716)
Q Consensus 270 ~~~~~~~~~~s 280 (716)
+--||-||+|-
T Consensus 907 EtKCPPR~PLk 917 (2084)
T PTZ00121 907 EEKCPPRFPLK 917 (2084)
T ss_pred cccCCCCCCCC
Confidence 34788887665
No 216
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=36 Score=38.94 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 582 LRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 582 ~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
-.+|.+.|..+..++-+.|++++..+....
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888887776554
No 217
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.55 E-value=61 Score=41.35 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=6.9
Q ss_pred cccccccccc
Q 005057 659 DRDCIICLKD 668 (716)
Q Consensus 659 ~~~C~IC~~~ 668 (716)
..-||||-..
T Consensus 503 GePCPVCGS~ 512 (1047)
T PRK10246 503 GQPCPLCGST 512 (1047)
T ss_pred CCCcCCCCcc
Confidence 4469998753
No 218
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.52 E-value=22 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=14.4
Q ss_pred CcccccCccccCCCccc--cCCchh
Q 005057 261 YSAEMTLPRDIECPKRF--NLSPSM 283 (716)
Q Consensus 261 ~~~~~~~~~~~~~~~~~--~~s~~~ 283 (716)
.+-.+.|-+|--+|.|+ .|..++
T Consensus 365 ~~cpI~L~~Dp~~~~ryy~~H~~Gv 389 (717)
T PF10168_consen 365 YSCPIRLHRDPLNPDRYYCYHNAGV 389 (717)
T ss_pred CCcceEEEecCCCCceEEEEecCcc
Confidence 34446777888888885 344443
No 219
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.35 E-value=18 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIK 527 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~ 527 (716)
++..++.+..++..||..+++++.
T Consensus 164 r~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 220
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.25 E-value=43 Score=39.17 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKRE 498 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~ere 498 (716)
..+|+..+|.....+..... |...|..-.++..++....+.++.........+.+...++
T Consensus 185 fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA 244 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKA 244 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44777777777777766665 5556666667777777777777776666666665555443
No 221
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.17 E-value=49 Score=39.74 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 466 LETENAEIRAEMEASKLSAAESVTT--------CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (716)
Q Consensus 466 Le~e~a~lr~e~Ea~k~~a~e~~~~--------~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K 525 (716)
++.++..|...++++.+...+..+. ++.+--.....-++..+||++-.-|.+-|..-+..
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtl 677 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTL 677 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Confidence 4456667777777766666665542 33333445555677788888766666666654444
No 222
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.14 E-value=68 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
-.||..+++++..--++.-..|-+|+.++-.|-+...
T Consensus 1095 ~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr 1131 (1320)
T PLN03188 1095 AEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHR 1131 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777765555665666666666555544333
No 223
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=90.10 E-value=0.23 Score=40.87 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=29.2
Q ss_pred CccccccccccccceEE-ecCCCcccChhhHHHhccc-CCCCCCC
Q 005057 658 CDRDCIICLKDEVSIVF-LPCAHQVLCASCSDNYGKK-GKATCPC 700 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvl-lpCgH~vfC~~C~~~~~~~-r~~~CP~ 700 (716)
....|+|....+.+.|. ..|+|. |....+..++.. +...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 35789999999999877 489999 999999999833 4568998
No 224
>PF15556 Zwint: ZW10 interactor
Probab=89.88 E-value=26 Score=36.12 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH-HHH
Q 005057 421 REETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK-REK 499 (716)
Q Consensus 421 kee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~e-rek 499 (716)
+.++-..|++|++|-..++..+..+-.+|..+-.+++-+. ++...|...++.++.+......-++-+.+ +..
T Consensus 58 Rqkai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaq-------rK~~qLqeA~eqlqaKKqva~eK~r~AQkqwql 130 (252)
T PF15556_consen 58 RQKAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQ-------RKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQL 130 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556789999999999888888887777665554444 44444444444333222211211222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 500 KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 500 k~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..-|.++.+.+-.+.+++-....++++..+.+++...++.
T Consensus 131 qQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQ 170 (252)
T PF15556_consen 131 QQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQ 170 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555555555555555555555555555555554443
No 225
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.82 E-value=56 Score=39.85 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 447 NALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 447 ~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
.+|..+..|+..+......++..+..++..+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666665555555555555555555443
No 226
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=89.65 E-value=15 Score=40.02 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 463 ~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~e 532 (716)
+.+|..+...|+.|+..+|..|-.-+....---+-+.-+++=..-|=++...||.|+..++.||+--++.
T Consensus 68 ~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERt 137 (351)
T PF07058_consen 68 VQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERT 137 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444432221111123356677778888999999999988887765544
No 227
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.64 E-value=55 Score=39.54 Aligned_cols=152 Identities=19% Similarity=0.215 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Q 005057 379 LHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDR 458 (716)
Q Consensus 379 ~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~ 458 (716)
+.|..|--.+|+++-+-|-+++-|+.+ +++-...-..|-...++....-......++.+++ |+.+++++..++.+
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~k----l~~~~qe~naeL~r 181 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRK----LEEQLEELNAELQR 181 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHHHHHHH
Confidence 456666667777777888888888876 4332222222222222222111122222222222 23333333333322
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 459 ANAAVRRLET-ENAEIRAEMEASKLSAAESVTTCLEVAK---REKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 459 a~~~~~~Le~-e~a~lr~e~Ea~k~~a~e~~~~~~e~~e---rekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
|+....--+. .....+.-=|.+.+...|..++.++.-. ......+++..+++.+.+|..+++.+++.+.+|..+.+
T Consensus 182 arqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~ 261 (916)
T KOG0249|consen 182 ARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL 261 (916)
T ss_pred HHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2211111000 0001111113333333444444333222 22333456666677777777777777777777775433
Q ss_pred H
Q 005057 535 R 535 (716)
Q Consensus 535 q 535 (716)
+
T Consensus 262 ~ 262 (916)
T KOG0249|consen 262 E 262 (916)
T ss_pred h
Confidence 3
No 228
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.64 E-value=5.7 Score=43.53 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
+.+++.++.++..+.+.....+.+|+.+...+.++++.++.+. .+..+.+.........+..+...++++...
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~-------~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL-------EELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555666666666666655444332 233344555566666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005057 522 EKEKIKELQQCLARIQQD 539 (716)
Q Consensus 522 ~k~KI~~le~el~qakq~ 539 (716)
.+.++.....++..++..
T Consensus 118 l~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777777777777766644
No 229
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.61 E-value=66 Score=40.34 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 457 DRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 457 e~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
++-+..+..+..+..++....+.++
T Consensus 470 ~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 470 DQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 230
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.33 E-value=52 Score=38.83 Aligned_cols=6 Identities=50% Similarity=0.656 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005057 602 QEFSRL 607 (716)
Q Consensus 602 kELe~L 607 (716)
.++..|
T Consensus 386 ~~l~~L 391 (563)
T TIGR00634 386 QELKAL 391 (563)
T ss_pred HHHHhC
Confidence 344443
No 231
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=0.6 Score=56.15 Aligned_cols=74 Identities=23% Similarity=0.478 Sum_probs=54.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccCCCchhHHHHHHHHHhhhhhccccccCCcccccc
Q 005057 585 KIEIDFQRHKDDLQRLEQEFSRLKASAESNEQNHQSNTLPPGKLERAKPQGETIARLLHELDELEDSSEKETNCDRDCII 664 (716)
Q Consensus 585 KaE~E~qr~k~~l~~LekELe~Lk~k~~s~~~s~e~~~Lp~~~~e~~~~q~e~~~~ll~el~~~e~~~~~~~~~~~~C~I 664 (716)
+.+...+.++.++.+.+++|+.++.+.+-.. ...|.+
T Consensus 809 qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q-------------------------------------------~skCs~ 845 (933)
T KOG2114|consen 809 QDEDAIEVYKKDIEEKRQELETLRTSAQIFQ-------------------------------------------VSKCSA 845 (933)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccceee-------------------------------------------eeeecc
Confidence 3445567889999999999999987762111 237999
Q ss_pred cccc-ccceEEecCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 665 CLKD-EVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 665 C~~~-~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
|... ..-+|..-|||. |=..|... +...||-|+....
T Consensus 846 C~~~LdlP~VhF~CgHs-yHqhC~e~----~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 846 CEGTLDLPFVHFLCGHS-YHQHCLED----KEDKCPKCLPELR 883 (933)
T ss_pred cCCccccceeeeecccH-HHHHhhcc----CcccCCccchhhh
Confidence 9864 455677789999 87888772 3578999998443
No 232
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.05 E-value=9.5 Score=41.83 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhhh
Q 005057 589 DFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 589 E~qr~k~~l~~LekELe~Lk~k 610 (716)
+.+.++.++.....++++|+.-
T Consensus 114 e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566777888888888764
No 233
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.80 E-value=25 Score=40.19 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=10.0
Q ss_pred CccccCCCc-cccCCch
Q 005057 267 LPRDIECPK-RFNLSPS 282 (716)
Q Consensus 267 ~~~~~~~~~-~~~~s~~ 282 (716)
.|.+..||- ||.++|+
T Consensus 208 ~w~~~scpvcR~~q~p~ 224 (493)
T KOG0804|consen 208 KWWDSSCPVCRYCQSPS 224 (493)
T ss_pred hcccCcChhhhhhcCcc
Confidence 356666776 6666665
No 234
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.51 E-value=35 Score=35.80 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESK 546 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~ 546 (716)
....+.++..+.+.++..+..|..++..+.++++....+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444333333
No 235
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=0.27 Score=52.70 Aligned_cols=46 Identities=30% Similarity=0.704 Sum_probs=37.5
Q ss_pred ccccccccccccce------EEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 659 DRDCIICLKDEVSI------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~~~v------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
...|.||.+...+. -++.|||. +|..|+..+.....-.||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 34799998765443 45679999 999999999888777899999985
No 236
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.35 E-value=39 Score=37.06 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhccccccccCCCC
Q 005057 585 KIEIDFQRHKDDLQRLEQEFSRLKASAESNEQNHQSNTL 623 (716)
Q Consensus 585 KaE~E~qr~k~~l~~LekELe~Lk~k~~s~~~s~e~~~L 623 (716)
|-..|-+.+.++|++|+.+|+..+........+.....+
T Consensus 223 Kl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l 261 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVL 261 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccc
Confidence 334456778899999999998887766444434333333
No 237
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.31 E-value=0.64 Score=51.62 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=32.8
Q ss_pred ccccccccccccceEEe-cC-------------------CCcc-cChhhHHHhccc------------CCCCCCCCCccc
Q 005057 659 DRDCIICLKDEVSIVFL-PC-------------------AHQV-LCASCSDNYGKK------------GKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pC-------------------gH~v-fC~~C~~~~~~~------------r~~~CP~CR~~i 705 (716)
...|.-|+....++.+. .| ..+. -|-+|..+|... +...||.||++|
T Consensus 271 ~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 45788888888887764 23 1111 288998886643 345799999987
Q ss_pred c
Q 005057 706 E 706 (716)
Q Consensus 706 ~ 706 (716)
=
T Consensus 351 C 351 (358)
T PF10272_consen 351 C 351 (358)
T ss_pred e
Confidence 3
No 238
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=88.18 E-value=0.15 Score=54.91 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEee
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVF 712 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~ 712 (716)
.....|++|+.+..-+...+|+|-|||..|.......+.+.||+|...+...+.|.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~ 189 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIH 189 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccc
Confidence 45679999999999999999999999999977765666778999998877766654
No 239
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.15 E-value=45 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005057 502 LKRLLAWEKQKAKLQEEIA 520 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~ 520 (716)
-|+...++.++..|++.|.
T Consensus 184 ~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3555556666666666655
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.13 E-value=55 Score=37.54 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHh
Q 005057 594 KDDLQRLEQEFSRLK 608 (716)
Q Consensus 594 k~~l~~LekELe~Lk 608 (716)
+.++..++..+++..
T Consensus 304 ~~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 304 ESKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHHhCCE
Confidence 344444444444433
No 241
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.75 E-value=40 Score=35.59 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~q 535 (716)
...+..++++++..+.++..+.+.+..
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444333
No 242
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.60 E-value=8.7 Score=48.35 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHHh
Q 005057 165 EYSLAGMVCLLQQ 177 (716)
Q Consensus 165 ~rSL~gLVafL~~ 177 (716)
.+||.-++-.|.+
T Consensus 226 VWSLG~ILYELLT 238 (1021)
T PTZ00266 226 MWALGCIIYELCS 238 (1021)
T ss_pred HHHHHHHHHHHHH
Confidence 3555444433433
No 243
>PRK00106 hypothetical protein; Provisional
Probab=87.60 E-value=67 Score=37.97 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=5.4
Q ss_pred cccceEEecCCC
Q 005057 668 DEVSIVFLPCAH 679 (716)
Q Consensus 668 ~~~~vvllpCgH 679 (716)
...++|++.|+-
T Consensus 263 dtp~~v~lS~fd 274 (535)
T PRK00106 263 DTPEVVVLSGFD 274 (535)
T ss_pred CCCCeEEEeCCC
Confidence 334444554443
No 244
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=87.59 E-value=42 Score=35.60 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhh-HH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005057 437 TTMKRLSEMENALRKASG-QV--------DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLA 507 (716)
Q Consensus 437 ~t~krLselE~el~k~~~-ql--------e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~ 507 (716)
+.+..+.-.|..+..-.+ ++ .-+...|.+++.+....+.+....-......+..+..+.+.-++.+++..=
T Consensus 95 aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrP 174 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRP 174 (239)
T ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344556666666655442 22 456667777777777777666666666666667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+=..++.+...++..+.+|..++..+.++|..
T Consensus 175 Yfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~ 206 (239)
T PF05276_consen 175 YFELKAKFNQQLEEQKEKVEELEAKVKQAKSR 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999998887765
No 245
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.49 E-value=27 Score=39.96 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 005057 522 EKEKIKELQQCLAR 535 (716)
Q Consensus 522 ~k~KI~~le~el~q 535 (716)
.+.+|..|++|+..
T Consensus 433 ~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 433 KDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555555443
No 246
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.32 E-value=76 Score=38.30 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
+.+++.++..+.....+.+...-+++-+....+.+.+
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~ 182 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAK 182 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 247
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.18 E-value=42 Score=36.18 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 466 Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
.+++....+.+++...-+..+.++.++++.++......++..||.+.+++.+.+.-.+.|+...
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555566666667777777777777788888888888777777777654
No 248
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.17 E-value=64 Score=37.27 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRK 578 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k 578 (716)
+..+..++....+||..++.++..|..++..-.-.- ...+..-..++++.+.++...-+.+.+-..+..+
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~----e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST----EQFELMNQEREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 333334444445555555555555555544211111 1112223334445555555556666555544444
No 249
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.01 E-value=0.19 Score=60.71 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHhHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 403 AARKLSNDLTELKMLRMEREE-TQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 403 aa~~L~~~~~Elk~LR~ekee-~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
+...|.....+...++...+. ..++..++..+.......++.+.+++..+..++..+...+..++.+...++.+++..+
T Consensus 126 le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~ 205 (722)
T PF05557_consen 126 LEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQ 205 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444433322 2333344444444445555666666666666666666667777777777777777666
Q ss_pred hhHHhHHHHHH
Q 005057 482 LSAAESVTTCL 492 (716)
Q Consensus 482 ~~a~e~~~~~~ 492 (716)
..+.+....+.
T Consensus 206 ~~~~e~e~~~~ 216 (722)
T PF05557_consen 206 SELQEAEQQLQ 216 (722)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55544444333
No 250
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.87 E-value=31 Score=33.38 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=15.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
+...+.++...+++..+.+.+|+.+++.++.++.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 251
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.77 E-value=99 Score=39.08 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=17.9
Q ss_pred cccceEEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 668 DEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 668 ~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
.+.+.+++.= .-.-..|+.-+-.+ +.||.-=.|+
T Consensus 529 k~~daIiVdt--e~ta~~CI~ylKeq--r~~~~TFlPl 562 (1141)
T KOG0018|consen 529 KNMDAIIVDT--EATARDCIQYLKEQ--RLEPMTFLPL 562 (1141)
T ss_pred cccceEEecc--HHHHHHHHHHHHHh--ccCCccccch
Confidence 4455555322 22357888766554 5566544444
No 252
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=86.55 E-value=0.31 Score=54.33 Aligned_cols=34 Identities=29% Similarity=0.694 Sum_probs=30.3
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK 693 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~ 693 (716)
+.+|+||..-+.+.+|+||+|. +|..|+.....+
T Consensus 4 elkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHN-LCQACARNILVQ 37 (699)
T ss_pred cccCceehhhccCceEeecccH-HHHHHHHhhccc
Confidence 5689999999999999999999 999999876543
No 253
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.37 E-value=4.9 Score=48.73 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005057 377 TMLHQIKDLERQVKERKEWAHQK------AMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALR 450 (716)
Q Consensus 377 ~l~~~~~~l~~~~~~~~~wa~~k------~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~ 450 (716)
.|.-+...|+.++..|.--.... -...++.|..-..+..+|..+...++...++++..-......+..+..++.
T Consensus 309 ~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~ 388 (722)
T PF05557_consen 309 ELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIE 388 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777788888887655542 134555555555555555544444333333322222222233344455555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005057 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSA 484 (716)
Q Consensus 451 k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a 484 (716)
++...+......+.+|++....+..|.+.++..+
T Consensus 389 ~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L 422 (722)
T PF05557_consen 389 ELEASLEALKKLIRRLERQKALATKERDYLRAQL 422 (722)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556677888888888888877766443
No 254
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.24 E-value=44 Score=34.54 Aligned_cols=88 Identities=25% Similarity=0.382 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHh----HHHHHHHHHhhhhhHHHHHHH---HHHHHH
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRME----REETQRLKKGKQTLEDTTMKR---LSEMEN 447 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~e----kee~e~lkkekqeLEe~t~kr---LselE~ 447 (716)
|.=|=.|++|-+.++. ....|+-.||.. +.+.+..-.....|.++...+ |...|+
T Consensus 12 IsLLKqQLke~q~E~~------------------~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ 73 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVN------------------QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCEN 73 (202)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHH
Confidence 4556666777666653 223334444432 333333444555555554443 445567
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 448 el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
+|.+...+.+.-..++..++.++..|+.+....
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 777777777666677888888888888877765
No 255
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=79 Score=37.15 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 005057 421 REETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (716)
Q Consensus 421 kee~e~lkkekqeLEe~---t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~er 497 (716)
.|+++...++.+.|-|- -+.-+++-|..+-.+......-.++...+..+...+++-+|.-|-+-..++..+.++.++
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666655543 334455555555555544444445666677777788888888888888888888887776
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 498 EKKCL------KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 498 ekk~~------k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+--.. .++..+|++...++.++..++..+..+-.-+++.++.
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54443 4677788888888888888877777666666555544
No 256
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=0.19 Score=54.02 Aligned_cols=44 Identities=25% Similarity=0.652 Sum_probs=30.9
Q ss_pred ccccccccccce--EEecCCCcccChhhHHHhcccCCCCCCCCCccccceE
Q 005057 661 DCIICLKDEVSI--VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRI 709 (716)
Q Consensus 661 ~C~IC~~~~~~v--vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i 709 (716)
.|.-|- .+.-+ -++||-|+ ||.+|+.... .+.||.|--.+..+.
T Consensus 92 fCd~Cd-~PI~IYGRmIPCkHv-FCl~CAr~~~---dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCD-FPIAIYGRMIPCKHV-FCLECARSDS---DKICPLCDDRVQRIE 137 (389)
T ss_pred eecccC-Ccceeeecccccchh-hhhhhhhcCc---cccCcCcccHHHHHH
Confidence 455553 33322 25899999 9999998764 358999998776553
No 257
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=85.84 E-value=0.62 Score=50.29 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=42.5
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEe
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRV 711 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i 711 (716)
..++|.+|-..-..+++.+|+|..||.+|+..-. ...||.|..-....++|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~---~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASA---SPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhccc---CCccccccccceeeeec
Confidence 3579999999999999999999999999998432 47999999876666655
No 258
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=85.62 E-value=99 Score=38.00 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
..+.+|.+.+.+.-++++.+.++.++-.+++
T Consensus 996 h~kefE~~mrdhrselEe~kKe~eaiineie 1026 (1424)
T KOG4572|consen 996 HEKEFEIEMRDHRSELEEKKKELEAIINEIE 1026 (1424)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555444443333
No 259
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.59 E-value=47 Score=34.19 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
++++.+...+++++.-++.-+.+..+- -.....++.-.|.++.+..+-.+....++.++..++..+.+..+.+
T Consensus 56 ~kdEE~~e~~e~qLkEAk~iaE~adrK-------~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 56 QKLEEKMEAQEAQLKEAKHIAEKADRK-------YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 444444444444444444433333333 3334456666777777777777777888888988888887777666
Q ss_pred HHHH
Q 005057 544 ESKW 547 (716)
Q Consensus 544 e~~~ 547 (716)
...-
T Consensus 129 ~~~e 132 (205)
T KOG1003|consen 129 SAKE 132 (205)
T ss_pred HHHH
Confidence 5543
No 260
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=85.52 E-value=24 Score=38.08 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005057 525 KIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEF 604 (716)
Q Consensus 525 KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekEL 604 (716)
+|...+-++.+++.....+..-|-+|+.-..||--.+-+.|+|+.++..-...--..+- ....-+|+|-.||.--.+.|
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~-ekDkGiQKYFvDINiQN~KL 161 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA-EKDKGIQKYFVDINIQNKKL 161 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHHhhhhhhHhHH
Confidence 33333333333333333334444455444444433444445555544433222211111 22456788888888777777
Q ss_pred HHHhhhh
Q 005057 605 SRLKASA 611 (716)
Q Consensus 605 e~Lk~k~ 611 (716)
+.|-..+
T Consensus 162 EsLLqsM 168 (305)
T PF15290_consen 162 ESLLQSM 168 (305)
T ss_pred HHHHHHH
Confidence 7776654
No 261
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.35 E-value=59 Score=35.11 Aligned_cols=12 Identities=33% Similarity=0.136 Sum_probs=7.2
Q ss_pred CCChhHHHHHHH
Q 005057 181 HLSKGDAMWCLL 192 (716)
Q Consensus 181 ~Ls~~dAm~~Ll 192 (716)
++|.||-|..|-
T Consensus 48 sisnwdlmerlk 59 (445)
T KOG2891|consen 48 SISNWDLMERLK 59 (445)
T ss_pred ccchHHHHHHHH
Confidence 356666666653
No 262
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.54 Score=50.33 Aligned_cols=31 Identities=42% Similarity=0.862 Sum_probs=27.8
Q ss_pred EecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 674 FLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 674 llpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
+-||+|. .|.+|.+.+...+...||-|.+..
T Consensus 20 in~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 20 INECGHR-LCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred eccccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence 4589999 999999999999999999999754
No 263
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.19 E-value=1.1e+02 Score=37.93 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE 522 (716)
Q Consensus 443 selE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~ 522 (716)
.+||..+.+...+++...+.+.+++..++.|+.+++.++......+..++ ..-.....++.+...++.|+...
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~-------~~~e~~e~le~~~~~~e~E~~~l 678 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLK-------AMKESYESLETRLKDLEAEAEEL 678 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHH
Confidence 44666666666677777777778888888888877766544443333222 11233445677777888899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 005057 523 KEKIKELQQCLARIQQDQKETESKWRQEQKAKE 555 (716)
Q Consensus 523 k~KI~~le~el~qakq~~~~~e~~~kqee~~ke 555 (716)
..||..|+.++..-+....++.++.+..+...+
T Consensus 679 ~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~ 711 (769)
T PF05911_consen 679 QSKISSLEEELEKERALSEELEAKCRELEEELE 711 (769)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 999999999999988888887777666544443
No 264
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.12 E-value=49 Score=34.02 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
+..++..++.++..++ ..++-|+..+..+..+.+.+........ .+..++.--+-.-+|+.+..|.+
T Consensus 91 ~k~rl~~~ek~l~~Lk-------~e~evL~qr~~kle~ErdeL~~kf~~~i------~evqQk~~~kn~lLEkKl~~l~~ 157 (201)
T PF13851_consen 91 LKARLKELEKELKDLK-------WEHEVLEQRFEKLEQERDELYRKFESAI------QEVQQKTGLKNLLLEKKLQALSE 157 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666676666666 4445555555555555554443333221 22223333344445555555555
Q ss_pred HHHHHH
Q 005057 518 EIANEK 523 (716)
Q Consensus 518 El~~~k 523 (716)
.++.-.
T Consensus 158 ~lE~ke 163 (201)
T PF13851_consen 158 QLEKKE 163 (201)
T ss_pred HHHHHH
Confidence 444433
No 265
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.97 E-value=47 Score=33.73 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005057 424 TQRLKKGKQTLEDTTMKRLSEMENAL 449 (716)
Q Consensus 424 ~e~lkkekqeLEe~t~krLselE~el 449 (716)
--.+...++.....+++++.++|..+
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777788888999998888
No 266
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.94 E-value=77 Score=36.10 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH----HHHHHHHHhHHH
Q 005057 377 TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDL----TELKMLRMEREE 423 (716)
Q Consensus 377 ~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~----~Elk~LR~ekee 423 (716)
.|-+.-..||-.|.-..|.--+|+|--.+||..+. .-|+.||.+.=+
T Consensus 140 qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~ 190 (552)
T KOG2129|consen 140 QLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQ 190 (552)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHH
Confidence 45555667777788888888999999999998542 234555555443
No 267
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.79 E-value=1.1e+02 Score=37.72 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 485 AESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 485 ~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.++.++.++-....+.........+.|+..+..++.+.+..+.+++.++.+.++..
T Consensus 767 ~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~ 822 (970)
T KOG0946|consen 767 IESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQI 822 (970)
T ss_pred HHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444455556666667777777777777777777777777777766554
No 268
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.79 E-value=1e+02 Score=37.37 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTC-LEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~-~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
+.+..+.+..+..|+..+....++...+-..++.++..-+. ...++. .++.+.+.....++..+|+.+.....|-
T Consensus 530 Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~---~y~~alqekvsevEsrl~E~L~~~E~rLNeARREH 605 (739)
T PF07111_consen 530 LQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQE---VYERALQEKVSEVESRLREQLSEMEKRLNEARREH 605 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666667777777766666666653221 112222 2455566666666666666555444433
No 269
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.66 E-value=14 Score=34.33 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 500 KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 500 k~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
.....+..+|.++..+.+++.+.|..|..+.++.+.++-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777665443
No 270
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.66 E-value=1.5e+02 Score=39.12 Aligned_cols=18 Identities=6% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVKE 391 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~ 391 (716)
.|-.|-.++.+|+.++.+
T Consensus 743 ri~el~~~IaeL~~~i~~ 760 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAE 760 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666655544
No 271
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=0.56 Score=51.91 Aligned_cols=46 Identities=20% Similarity=0.635 Sum_probs=33.6
Q ss_pred cccccccccccc---ce-EEecCCCcccChhhHHHhccc--CCCCCCCCCccc
Q 005057 659 DRDCIICLKDEV---SI-VFLPCAHQVLCASCSDNYGKK--GKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~~---~v-vllpCgH~vfC~~C~~~~~~~--r~~~CP~CR~~i 705 (716)
...|.||.+-+. ++ .+-.|||. |=..|...|... ..+.||+|+...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecc
Confidence 458999976332 22 24459999 999999999876 236899999444
No 272
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.54 E-value=0.3 Score=59.00 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHhh
Q 005057 403 AARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTM---KRLSEMENALRKAS 453 (716)
Q Consensus 403 aa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~---krLselE~el~k~~ 453 (716)
.|.|+.+--.++...|..-++...++++.++|++.++ .+...+|.++.++.
T Consensus 306 ~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555566666667777788888888888888654 66777887777744
No 273
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.49 E-value=0.45 Score=46.86 Aligned_cols=56 Identities=30% Similarity=0.681 Sum_probs=38.9
Q ss_pred ccccccccccccceEEecCCCc-c-----cC------hhhHHHhccc------------------------------CCC
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQ-V-----LC------ASCSDNYGKK------------------------------GKA 696 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~-v-----fC------~~C~~~~~~~------------------------------r~~ 696 (716)
+..|+||++-+-++|++-|--. - +| ..|.+++.+. ..-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 3579999999999999887422 1 23 3466654311 123
Q ss_pred CCCCCCccccceEEeecc
Q 005057 697 TCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 697 ~CP~CR~~i~~~i~i~~a 714 (716)
.||.||..+.+...|--|
T Consensus 82 ~CPLCRG~V~GWtvve~A 99 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPA 99 (162)
T ss_pred cCccccCceeceEEchHH
Confidence 699999999998877554
No 274
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.06 E-value=1.2e+02 Score=37.54 Aligned_cols=35 Identities=9% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+..+.+++.....++..+..+|...+++...++..
T Consensus 122 i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye 156 (769)
T PF05911_consen 122 IAELSEEKSQAEAEIEDLMARLESTEKENSSLKYE 156 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666667777777777777777766655
No 275
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.89 E-value=53 Score=37.30 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 005057 456 VDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEV 494 (716)
Q Consensus 456 le~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~ 494 (716)
++.....+.++..++..++++.++++-...+.+..+.++
T Consensus 22 laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~L 60 (459)
T KOG0288|consen 22 LAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRL 60 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555554444444444433
No 276
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.78 E-value=20 Score=36.45 Aligned_cols=76 Identities=26% Similarity=0.304 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..++.....++.|+..+.+.-.+.+..+-.....-.+.-..+..-+..+..|+.++...+.+|..++.++......
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433433333333333333334444455555566666666666666666665554444
No 277
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.67 E-value=0.34 Score=59.72 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQ 402 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~~q 402 (716)
-...|-.++.-+..+|..|+--...-+++
T Consensus 286 ~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 286 AKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp -----------------------------
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 45556677777777777776655554433
No 278
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=83.26 E-value=1 Score=48.63 Aligned_cols=54 Identities=26% Similarity=0.646 Sum_probs=37.0
Q ss_pred CCccccccccc-------------------cccceEEecCCCcccChhhHHHhccc---------CCCCCCCCCccccc-
Q 005057 657 NCDRDCIICLK-------------------DEVSIVFLPCAHQVLCASCSDNYGKK---------GKATCPCCRVPIEQ- 707 (716)
Q Consensus 657 ~~~~~C~IC~~-------------------~~~~vvllpCgH~vfC~~C~~~~~~~---------r~~~CP~CR~~i~~- 707 (716)
.+.++|++|+. -+.+.+|-||||+ |.+=...++.+ =...||+|.+....
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 35789999975 2345578999998 77666665543 13469999988754
Q ss_pred --eEEee
Q 005057 708 --RIRVF 712 (716)
Q Consensus 708 --~i~i~ 712 (716)
++++.
T Consensus 417 ~~~ikli 423 (429)
T KOG3842|consen 417 QGYIKLI 423 (429)
T ss_pred CceEEEE
Confidence 45543
No 279
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=83.23 E-value=0.36 Score=53.64 Aligned_cols=53 Identities=30% Similarity=0.789 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEecCCCcccChhhHHHhccc-----C----CCCCCCCCccccc---
Q 005057 659 DRDCIICLK-------------------DEVSIVFLPCAHQVLCASCSDNYGKK-----G----KATCPCCRVPIEQ--- 707 (716)
Q Consensus 659 ~~~C~IC~~-------------------~~~~vvllpCgH~vfC~~C~~~~~~~-----r----~~~CP~CR~~i~~--- 707 (716)
.+.|++|+. .+.+.+|.||||. |.+=-..++.+ + ...||+|-+++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv--~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV--CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccc--cchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 678999974 2356689999998 54433333222 1 2479999999965
Q ss_pred eEEeec
Q 005057 708 RIRVFG 713 (716)
Q Consensus 708 ~i~i~~ 713 (716)
+++++|
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 566655
No 280
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.05 E-value=59 Score=33.36 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 005057 376 VTMLHQIKDLERQ 388 (716)
Q Consensus 376 ~~l~~~~~~l~~~ 388 (716)
.+|+..|.||+..
T Consensus 4 ~dL~~~v~dL~~~ 16 (193)
T PF14662_consen 4 SDLLSCVEDLQLN 16 (193)
T ss_pred hHHHHHHHHHHHH
Confidence 4567777777654
No 281
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.91 E-value=1.3e+02 Score=36.99 Aligned_cols=11 Identities=0% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 005057 374 IVVTMLHQIKD 384 (716)
Q Consensus 374 ~~~~l~~~~~~ 384 (716)
-++.||.+|.+
T Consensus 775 ~m~~lv~kVn~ 785 (1259)
T KOG0163|consen 775 TMLELVAKVNK 785 (1259)
T ss_pred HHHHHHHHHHH
Confidence 34556665543
No 282
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.76 E-value=67 Score=33.77 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 005057 555 ELLLAQVEEERRSKEGAEAGNKRK 578 (716)
Q Consensus 555 eea~~~~e~er~erE~aE~~~k~k 578 (716)
.++...++.++..+.+-+.....+
T Consensus 131 ~~l~~~~~~Er~~R~erE~~i~kr 154 (247)
T PF06705_consen 131 NELQEAFENERNEREEREENILKR 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 283
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.66 E-value=61 Score=34.14 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 493 EVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 493 e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+....++...++...|..|...|..++...+.++..++....+..
T Consensus 32 ~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 32 QWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666666666555555555544433
No 284
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=82.62 E-value=2.1 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=30.9
Q ss_pred hHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhc
Q 005057 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSI 204 (716)
Q Consensus 170 gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~ 204 (716)
.+|..|++.||+++.+...++|..++.|+..|+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~ 37 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDA 37 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57889999999999999999999999999988753
No 285
>PF13166 AAA_13: AAA domain
Probab=82.46 E-value=1.2e+02 Score=36.50 Aligned_cols=39 Identities=5% Similarity=0.136 Sum_probs=25.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 365 TITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQA 403 (716)
Q Consensus 365 ~v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qa 403 (716)
.++.+.++++....-....++..+|..-.++.....-++
T Consensus 265 ~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 303 (712)
T PF13166_consen 265 PLSEERKERLEKYFDEEYEKLIEELEKAIKKLEKAIENI 303 (712)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776666666677777776666655544333
No 286
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=82.45 E-value=2.2 Score=32.67 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=32.5
Q ss_pred hhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhc
Q 005057 169 AGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSI 204 (716)
Q Consensus 169 ~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~ 204 (716)
...|..|...||.++...+.++|..++.|+..|+..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~ 38 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINN 38 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 457889999999999999999999999999998753
No 287
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.39 E-value=62 Score=36.56 Aligned_cols=165 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (716)
Q Consensus 434 LEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~ 513 (716)
++.+...+.......+.-+..|++.....+.+++.+....+.+....... +...-...++..++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~------------~~~~~~~~~l~~l~~~l~ 225 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD------------ERLDVERARLNELSAQLV 225 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC------------cccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005057 514 KLQEEIANEKEKIKE-----------LQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEAL 582 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~-----------le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~ 582 (716)
..+.++.....+... -...+..+++...+++.+..+....-.+..-.+-..+.+++.+++........+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~ 305 (444)
T TIGR03017 226 AAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKV 305 (444)
T ss_pred HHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 005057 583 RLKIEIDFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 583 ~~KaE~E~qr~k~~l~~LekELe~Lk~k 610 (716)
....+.+....+..+..++..+++++..
T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 333 (444)
T TIGR03017 306 TSSVGTNSRILKQREAELREALENQKAK 333 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 288
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.15 E-value=1.2e+02 Score=36.97 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETE 469 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e 469 (716)
..+.-..+++.+.....++....+.+.++...
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~ 204 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESV 204 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444444444333
No 289
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=82.14 E-value=65 Score=33.19 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK-------EKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 486 e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k-------~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
....+++.+..+-.+.....+.+++.+.+.+..+++.. .|+..++.++..+..+..+....|..-
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777888888888888888887763 567777777777666655555554444
No 290
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.12 E-value=57 Score=34.38 Aligned_cols=23 Identities=26% Similarity=0.824 Sum_probs=17.6
Q ss_pred cChhhHHHhcccCCCCCCCCCccc
Q 005057 682 LCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 682 fC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
.|-+|-+.+ .+....||.|.+.-
T Consensus 196 ~C~sC~qqI-HRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQI-HRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHH-hcCCCCCccccccc
Confidence 699997764 55578999998754
No 291
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=82.05 E-value=72 Score=38.32 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 005057 595 DDLQRLEQEFSRLKASA 611 (716)
Q Consensus 595 ~~l~~LekELe~Lk~k~ 611 (716)
..+++.+.++.+.-.+.
T Consensus 366 ~rkkr~~aei~Kffqk~ 382 (811)
T KOG4364|consen 366 LRKKRHEAEIGKFFQKI 382 (811)
T ss_pred HHHHHHHHHHHhhhccc
Confidence 34555666666665544
No 292
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.98 E-value=47 Score=41.01 Aligned_cols=41 Identities=15% Similarity=-0.023 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhcc
Q 005057 161 RQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (716)
Q Consensus 161 ~~i~~rSL~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~~ 205 (716)
.....+-|..|...+..+.+.|.. + +=.++.+|+..|.+.-
T Consensus 244 ~~~~~~il~~l~~~i~~~~~~l~~--~--~~~l~~lD~l~a~a~~ 284 (782)
T PRK00409 244 EQEIERILKELSAKVAKNLDFLKF--L--NKIFDELDFIFARARY 284 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH
Confidence 345556667777766665544321 1 1123566666665543
No 293
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.86 E-value=66 Score=33.08 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (716)
Q Consensus 434 LEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~ 513 (716)
-++...+.+.++..+..+++.++..+...+.+|+.+......+...++ ....++...++++.
T Consensus 42 ~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~------------------~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 42 KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ------------------NLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 356667788888888888887776666666666555554433332211 11223344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.|+-+-+...++...++++-.++....
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565555556666666666555555443
No 294
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=81.46 E-value=1.1e+02 Score=35.92 Aligned_cols=11 Identities=9% Similarity=-0.327 Sum_probs=5.9
Q ss_pred CCccccccccc
Q 005057 657 NCDRDCIICLK 667 (716)
Q Consensus 657 ~~~~~C~IC~~ 667 (716)
.....=.||..
T Consensus 389 ~~S~~~~Ir~r 399 (489)
T PF05262_consen 389 KRSPVNGIRGR 399 (489)
T ss_pred cccccceeccc
Confidence 33455566654
No 295
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.45 E-value=24 Score=36.50 Aligned_cols=22 Identities=14% Similarity=0.441 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 005057 437 TTMKRLSEMENALRKASGQVDR 458 (716)
Q Consensus 437 ~t~krLselE~el~k~~~qle~ 458 (716)
..+.++.++|.++.+++.+++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777776655543
No 296
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=81.44 E-value=1.2 Score=35.59 Aligned_cols=41 Identities=27% Similarity=0.662 Sum_probs=30.9
Q ss_pred ccccccc--cccceEEecCC-----CcccChhhHHHhcccC-CCCCCCCC
Q 005057 661 DCIICLK--DEVSIVFLPCA-----HQVLCASCSDNYGKKG-KATCPCCR 702 (716)
Q Consensus 661 ~C~IC~~--~~~~vvllpCg-----H~vfC~~C~~~~~~~r-~~~CP~CR 702 (716)
.|.||++ ...+..+.||. |. +=..|+..|+... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899996 56677789995 44 4479999998653 45899995
No 297
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.40 E-value=95 Score=34.58 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
+-...||.+-.++..|++-.-..+.+.|-+...+..+++..+..
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R 182 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR 182 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777888888777777777777777777777765543
No 298
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.37 E-value=71 Score=33.08 Aligned_cols=98 Identities=12% Similarity=0.156 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 005057 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR-----EKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 443 selE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~er-----ekk~~k~l~~~Ekq~~~Lqe 517 (716)
.-|+.-+.....++..+...+-..+.....++.+++.....+.+.+...+.+.+. .+.-+.+....+.+...|+.
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777777778888888888887777777777776666664 34444455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005057 518 EIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 518 El~~~k~KI~~le~el~qakq~~ 540 (716)
++...+..+.++...+.+++...
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555443
No 299
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=81.31 E-value=84 Score=37.75 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=8.1
Q ss_pred hhHHHHHHHHhcCchh
Q 005057 184 KGDAMWCLLMSDLHVG 199 (716)
Q Consensus 184 ~~dAm~~Ll~ad~dl~ 199 (716)
.++-|.-|++-++++.
T Consensus 79 ~~n~~~~L~ae~~~~~ 94 (811)
T KOG4364|consen 79 SLNSMVALLAEEMSLP 94 (811)
T ss_pred ccccccchhhhhcccc
Confidence 4444555555555553
No 300
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.28 E-value=0.78 Score=43.99 Aligned_cols=50 Identities=26% Similarity=0.590 Sum_probs=39.3
Q ss_pred ccccccccccccceEEec----CCCcccChhhHHHhccc--CCCCCCCCCccccceE
Q 005057 659 DRDCIICLKDEVSIVFLP----CAHQVLCASCSDNYGKK--GKATCPCCRVPIEQRI 709 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllp----CgH~vfC~~C~~~~~~~--r~~~CP~CR~~i~~~i 709 (716)
--+|-||.+...+--|+. ||-. .|..|-..+++. -...||+|.++|.+.-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 458999999887776654 7766 999998887755 3578999999997653
No 301
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.24 E-value=91 Score=34.25 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
.+...|...+.+++..+.....+..+|..|+..++.+--.-...+..|.
T Consensus 111 kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~ 159 (309)
T PF09728_consen 111 KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFE 159 (309)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555655666666777777777777654444444444443
No 302
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.10 E-value=45 Score=41.08 Aligned_cols=19 Identities=16% Similarity=-0.148 Sum_probs=10.4
Q ss_pred HHHHHHHhhHHHHHHhhCC
Q 005057 162 QLEEYSLAGMVCLLQQVRP 180 (716)
Q Consensus 162 ~i~~rSL~gLVafL~~~~P 180 (716)
....+.|..|...+..+.+
T Consensus 240 ~e~~~il~~L~~~i~~~~~ 258 (771)
T TIGR01069 240 CEIEKILRTLSEKVQEYLL 258 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666655544
No 303
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=0.57 Score=49.95 Aligned_cols=33 Identities=27% Similarity=0.648 Sum_probs=28.9
Q ss_pred cccccccccccceEEecCC----CcccChhhHHHhccc
Q 005057 660 RDCIICLKDEVSIVFLPCA----HQVLCASCSDNYGKK 693 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCg----H~vfC~~C~~~~~~~ 693 (716)
..|++|.++--++-|+.|- |. ||+.|....+++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccc-eecccCHHHHHh
Confidence 5899999999999999994 66 999999987765
No 304
>PLN02939 transferase, transferring glycosyl groups
Probab=81.00 E-value=1.7e+02 Score=37.15 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=14.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.+-|.+.++.+++-+..++...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~ 399 (977)
T PLN02939 378 IQLYQESIKEFQDTLSKLKEES 399 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3446666777777777766654
No 305
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.81 E-value=2.2e+02 Score=38.39 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHH-------HHHHHHhhhH
Q 005057 383 KDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEM-------ENALRKASGQ 455 (716)
Q Consensus 383 ~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLsel-------E~el~k~~~q 455 (716)
.+=.++|.+--+|..+.+--...-+..=..+++.++...-+.+....+.+..+-+.+.++..| ++...-+..+
T Consensus 121 ~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~e 200 (1822)
T KOG4674|consen 121 QEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRE 200 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333455666666666555333333333334445555555555555555555444444444333 3333444445
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 456 VDRANAAVRRLETE----NAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 456 le~a~~~~~~Le~e----~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
+-..+-++..++++ +..|+..+..++....+ +.+.-+-...++..+++.+..+..++..+++.-...+.
T Consensus 201 L~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~-------~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~ 273 (1822)
T KOG4674|consen 201 LSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAE-------LQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEE 273 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 55555566666665 44444444433333322 22222233333333444444444444444444333333
Q ss_pred H
Q 005057 532 C 532 (716)
Q Consensus 532 e 532 (716)
+
T Consensus 274 k 274 (1822)
T KOG4674|consen 274 K 274 (1822)
T ss_pred H
Confidence 3
No 306
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.57 E-value=37 Score=37.58 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhh
Q 005057 596 DLQRLEQEFSRLKASA 611 (716)
Q Consensus 596 ~l~~LekELe~Lk~k~ 611 (716)
.|..+..|.+.|+.+.
T Consensus 246 ~i~EfdiEre~LRAel 261 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAEL 261 (561)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555556666666654
No 307
>PRK11281 hypothetical protein; Provisional
Probab=80.50 E-value=1.9e+02 Score=37.40 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea 479 (716)
....+++...++..+.++.+++.+...+..+...+++.+..+
T Consensus 140 ~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 140 AQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334455555555555555566666666666666666655543
No 308
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.27 E-value=1.8e+02 Score=37.00 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhc-HHHHHHHHHh----HHHH------HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005057 396 AHQKAMQAARKLSND-LTELKMLRME----REET------QRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVR 464 (716)
Q Consensus 396 a~~k~~qaa~~L~~~-~~Elk~LR~e----kee~------e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~ 464 (716)
.|||+|-.| |.|| ..|+..||.+ +++. ++...+-.+ -.....+|.+||.+|..+..++..-...+.
T Consensus 396 vNQkl~K~~--llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e-~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 396 VNQKLMKKT--LLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKE-KKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred cchHHHHHH--HHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777666 4444 3567776654 3332 111111001 123446777888888777777765555555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 465 RLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 465 ~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~e 532 (716)
-....+..|..+.+.++..+..... .+..++++...++..|......|.+.++.
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~--------------el~~~~ee~~~~~~~l~~~e~ii~~~~~s 526 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNK--------------ELESLKEELQQAKATLKEEEEIISQQEKS 526 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777766655554443 33444445555555554444444444443
No 309
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=80.10 E-value=1.5e+02 Score=36.02 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcHHHHHHHH
Q 005057 370 QKDEIVVTMLHQIKDLERQVKERKEWA-HQKAMQAARKLSNDLTELKMLR 418 (716)
Q Consensus 370 ~k~e~~~~l~~~~~~l~~~~~~~~~wa-~~k~~qaa~~L~~~~~Elk~LR 418 (716)
+-.|||.-=++.++-|+.+++.-.+|- +||. ||..+-.||..|+
T Consensus 63 qqaelis~qlqE~rrle~e~~~lre~sl~qkm-----rLe~qa~Ele~l~ 107 (739)
T PF07111_consen 63 QQAELISRQLQELRRLEEEVRALRETSLQQKM-----RLEAQAEELEALA 107 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHH
Confidence 457899988899999999999999994 4443 3444444666554
No 310
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.08 E-value=0.77 Score=55.70 Aligned_cols=48 Identities=23% Similarity=0.541 Sum_probs=34.9
Q ss_pred cccccccccc-------ccceEEecCCCcccChhhHHHhccc-CCCCCCCCCccccc
Q 005057 659 DRDCIICLKD-------EVSIVFLPCAHQVLCASCSDNYGKK-GKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~-------~~~vvllpCgH~vfC~~C~~~~~~~-r~~~CP~CR~~i~~ 707 (716)
-.+|.||+.- ..+-.--.|.|. |=..|.-.|... +...||.||..|+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4589999851 111112359999 999999998766 45689999988763
No 311
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.05 E-value=1.3e+02 Score=35.44 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 367 TDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAA 404 (716)
Q Consensus 367 ~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa 404 (716)
..+.-+.+|.....++..|..+|.+-+.+..+++.++-
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L 282 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEEELERAL 282 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666779999999999999999999999998886554
No 312
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.02 E-value=0.8 Score=49.09 Aligned_cols=43 Identities=23% Similarity=0.541 Sum_probs=34.7
Q ss_pred cccccccccccceEEec-CCCcccChhhHHHhcccCCCCCCCCCc
Q 005057 660 RDCIICLKDEVSIVFLP-CAHQVLCASCSDNYGKKGKATCPCCRV 703 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllp-CgH~vfC~~C~~~~~~~r~~~CP~CR~ 703 (716)
..|+.|...-++.+-+| |+|. ||.+|+...+--....||+|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 58999998777777665 6777 9999999765554679999986
No 313
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.01 E-value=33 Score=37.58 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
..|.++|+...++.... ..|-.+...+--+.+.+|-+..+++..+-+..+.-+.+...+..+-.....|+.++
T Consensus 84 ~~l~evEekyrkAMv~n-------aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSN-------AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHHHHHHHHH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555544322 22222333333333444444445555444444433333444443344444556666
Q ss_pred HHHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQCL 533 (716)
Q Consensus 520 ~~~k~KI~~le~el 533 (716)
..++..|.+.++-+
T Consensus 157 ~~Lre~L~~rdeli 170 (302)
T PF09738_consen 157 DELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655554443
No 314
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.82 E-value=49 Score=39.34 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE-------QKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe-------e~~keea~~~~e~er~erE~aE 572 (716)
-|+..|-++++++..||..|+-.++.-++.....+.-.+++ +..|-++++.+.+.+-.+..+|
T Consensus 125 LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred ehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 35557777777777777777776665544433333333332 5566677777777666665555
No 315
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=79.51 E-value=97 Score=33.52 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=13.2
Q ss_pred HhhhhHHHHHHHHHHHHHh
Q 005057 590 FQRHKDDLQRLEQEFSRLK 608 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk 608 (716)
.+.+...+..+++||..|+
T Consensus 279 ~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 279 KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4556777888888888764
No 316
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=1.2 Score=48.42 Aligned_cols=55 Identities=25% Similarity=0.495 Sum_probs=38.1
Q ss_pred CCccccccccccccce-EEecCCCcccChhhHHHhcccCCCCCCCCCccc--cceEEeec
Q 005057 657 NCDRDCIICLKDEVSI-VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI--EQRIRVFG 713 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~v-vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i--~~~i~i~~ 713 (716)
.....|+||+....+. |+.--|-+ ||+.|+-.+... ...||+-..|. ...+++|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVN-YGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHh-cCCCCccCCcchHHHHHHHhc
Confidence 3466899999866554 44334555 999999998775 67899866554 44555553
No 317
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.65 E-value=1.3e+02 Score=34.58 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005057 389 VKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLE 467 (716)
Q Consensus 389 ~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le 467 (716)
...=.+|-++.+-++-.+|..--.++...|.++.-. +- +-......++.+++.++..+..++..+...+..++
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~----~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI--LP----DQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--Cc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666555555555555555554333211 00 00112335566666666655555544444444333
No 318
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.55 E-value=1.3e+02 Score=34.54 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHH
Q 005057 383 KDLERQVKERKEWAHQKAMQAARKLSNDLT 412 (716)
Q Consensus 383 ~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~ 412 (716)
..+-+++.+.-+||+++--|-+-...+++.
T Consensus 38 ~~~l~~~ee~e~~~~~~~A~~~~~~kkel~ 67 (438)
T COG4487 38 SRILNTLEEFEKEANEKRAQYRSAKKKELS 67 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888899999977666655553333
No 319
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.54 E-value=90 Score=38.62 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=4.7
Q ss_pred CCCCCCCccc
Q 005057 18 SVKPEFDPCC 27 (716)
Q Consensus 18 ~~~~~~~~~~ 27 (716)
.-.|..|+..
T Consensus 33 ~l~P~~~~~~ 42 (782)
T PRK00409 33 QLDPETDFEE 42 (782)
T ss_pred cCCCCCCHHH
Confidence 3445555543
No 320
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=78.52 E-value=23 Score=40.46 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 515 LQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 515 LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
|+-++-+++.--..++++++.-++.-..++.+.|+|.+.+.+.-.+++.+-+-+|++|
T Consensus 533 Lkmd~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqae 590 (641)
T KOG3915|consen 533 LKMDFLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAE 590 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 3333334444444566666655555455566666666666665555555555555444
No 321
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.35 E-value=1.6e+02 Score=35.35 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
+++|.|+..|-.|+.++|=|+..+++
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444444444443
No 322
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.33 E-value=50 Score=30.82 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL 482 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~ 482 (716)
|++.+..+..|.+.....+++|+++++++++.++..|.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888889999999999999999885443
No 323
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.16 E-value=77 Score=36.24 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIK 527 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~ 527 (716)
.+.-++.+|.....+|+.|++++.+-.
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~r 276 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQR 276 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555566666666655533
No 324
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.04 E-value=90 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.+...+.++.+.+.+..-.+.|+..++.++..++...
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3444555555556666666666666666666655553
No 325
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.65 E-value=0.76 Score=53.70 Aligned_cols=36 Identities=36% Similarity=0.727 Sum_probs=28.9
Q ss_pred cccccccccc----cceEEecCCCcccChhhHHHhcccCCCCCC
Q 005057 660 RDCIICLKDE----VSIVFLPCAHQVLCASCSDNYGKKGKATCP 699 (716)
Q Consensus 660 ~~C~IC~~~~----~~vvllpCgH~vfC~~C~~~~~~~r~~~CP 699 (716)
..|.||+..+ ...+++-|||+ .|..|++..+. +.||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN---ASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh---ccCC
Confidence 4799997765 44567789999 99999999865 4788
No 326
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.58 E-value=35 Score=34.77 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
...+.....|+++++..+.++..++..+..++..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556677777777777777777777766543
No 327
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.50 E-value=1.5e+02 Score=34.49 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 577 RKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 577 ~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.+.+..+...|.|....+.++.+||+||.+++..+
T Consensus 515 s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s 549 (622)
T COG5185 515 SKFELSKEENERELVAQRIEIEKLEKELNDLNLLS 549 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34556666677777778888999999999998776
No 328
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.50 E-value=2.3e+02 Score=36.83 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHH--Hhhh
Q 005057 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQ--CLARIQQDQKETESKWRQEQKAKELLLAQVEEER-R-SKEGA--EAGN 575 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~--el~qakq~~~~~e~~~kqee~~keea~~~~e~er-~-erE~a--E~~~ 575 (716)
...+...+.++..+..++...++++..... ++.+..-....++.+.++.+........|.-... . ..++. -...
T Consensus 970 ~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~ 1049 (1294)
T KOG0962|consen 970 IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEE 1049 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666777777777777777766654332 3333333333444444444333333333321111 0 01111 1111
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005057 576 KRKLEALRLKIEIDFQRHKDDLQRLEQEFSRL 607 (716)
Q Consensus 576 k~k~e~~~~KaE~E~qr~k~~l~~LekELe~L 607 (716)
+.++....-...-+...|.+.+.+++++|.+-
T Consensus 1050 ~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~ 1081 (1294)
T KOG0962|consen 1050 REKLSSEKNLLLGEMKQYESQIKKLKQELREK 1081 (1294)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22333444444556677778888888877643
No 329
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=77.33 E-value=19 Score=42.15 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
..+..+|-..+.|+.||++...||.++++.+.+.++..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL 130 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL 130 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555666777888999999999988888888766653
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.02 E-value=1.6 Score=48.87 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=35.7
Q ss_pred ccccccccccc-----cceEEecCCCcccChhhHHHhccc-CCCCCCCCCccc
Q 005057 659 DRDCIICLKDE-----VSIVFLPCAHQVLCASCSDNYGKK-GKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~~~-----~~vvllpCgH~vfC~~C~~~~~~~-r~~~CP~CR~~i 705 (716)
...|+||++.. -..+.+.|||. |=..|++.|+.+ -...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCChh
Confidence 45899999852 44677899999 999999999854 234799998643
No 331
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=76.64 E-value=1.2e+02 Score=37.07 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=44.5
Q ss_pred cccCCC-chhhHHHHHHHHhhccCCCCC-CCCCCCCCCCCCCchhh------ccHHHHHHH----------HHhh-HHHH
Q 005057 114 HCYGGM-DVLTNILHNSLAYLNSSSTSG-GNGNTSSVNSEDSEPVF------NDLRQLEEY----------SLAG-MVCL 174 (716)
Q Consensus 114 ~CyG~l-DPVSNII~Nti~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~l~~i~~r----------SL~g-LVaf 174 (716)
|=|.|. ||-.||--..+.|+..|.+-. .+.|. -++-..++. ..|+.+... .|.. +-..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ldfEkpi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~ 138 (762)
T PLN03229 62 HEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKPV---TLDFEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQA 138 (762)
T ss_pred cCCCCCCCCCCCcccchhhHhhccCCCCCCCCCC---CcchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHH
Confidence 667665 888899999999998874321 12221 111000110 123222222 1222 2234
Q ss_pred HHhhCCCCChhHHHHHHHHhc
Q 005057 175 LQQVRPHLSKGDAMWCLLMSD 195 (716)
Q Consensus 175 L~~~~P~Ls~~dAm~~Ll~ad 195 (716)
....|..||.||.+..+...+
T Consensus 139 ~~~iy~~LT~werV~~aR~p~ 159 (762)
T PLN03229 139 LKDLYTHLTPIQRVNIARHPN 159 (762)
T ss_pred HHHHHccCCHHHHHHHHhCCC
Confidence 578899999999998776655
No 332
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.55 E-value=0.81 Score=55.31 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
.+-++.++|.++.+++.+.+ ......++...++-+++.++-++....+ ++...++=|+++..+..+.+++..|++
T Consensus 265 ~~~~~e~le~ei~~L~q~~~----eL~~~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKkKLed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQENE----ELQAEAREARALRDELDELREKADRADK-LENEVEKYKKKLEDLEDLKRQVKELEE 339 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766664442 1122223444455555544444333222 333445556677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005057 518 EIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 518 El~~~k~KI~~le~el~qakq~ 539 (716)
+-...-+.+..+++++..+...
T Consensus 340 ~N~~l~e~~~~LEeel~~~~~~ 361 (713)
T PF05622_consen 340 DNAVLLETKAMLEEELKKARAL 361 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 7777777777777777665544
No 333
>PF13514 AAA_27: AAA domain
Probab=76.52 E-value=2.4e+02 Score=36.36 Aligned_cols=35 Identities=6% Similarity=0.068 Sum_probs=16.0
Q ss_pred ccCCCccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 005057 354 MRDLNIDENLETITDDQKDEIVVTMLHQIKDLERQVKER 392 (716)
Q Consensus 354 ~~~~~~d~~~~~v~~d~k~e~~~~l~~~~~~l~~~~~~~ 392 (716)
.+..| ++...|+-. -+-++..+.++...+.++..-
T Consensus 596 ~p~~p-~~~~~Wl~~---~~~~~~~~~~~~~~~~~~~~~ 630 (1111)
T PF13514_consen 596 LPLSP-AEMRDWLAR---REAALEAAEELRAARAELEAL 630 (1111)
T ss_pred CCCCh-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34445 333377632 223344455555555444443
No 334
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.49 E-value=67 Score=32.98 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 493 EVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 493 e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
++..+-+.......+++.++...+.+|...+..|..|+.+..
T Consensus 144 ~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 144 QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666677777777778878777777777777643
No 335
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.34 E-value=1.5e+02 Score=33.92 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
.+|+.-|.+.++++.|+....+.++.+...+.+.+.++..++
T Consensus 20 ~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq 61 (459)
T KOG0288|consen 20 TELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQ 61 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444444444444444333
No 336
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.94 E-value=89 Score=31.18 Aligned_cols=117 Identities=13% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHHHHHHHHHHHHHH
Q 005057 423 ETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA-ESVTTCLEVAKREKKC 501 (716)
Q Consensus 423 e~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~-e~~~~~~e~~erekk~ 501 (716)
-++..+.+.=..-++.|.....+..+|..++.++...-..+..|+......|..+-...+... =++.-++++-+.++..
T Consensus 10 ~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~l 89 (159)
T PF05384_consen 10 TIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHEL 89 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHH
Confidence 344445555555666777777777777777766655555555555544444443322111110 0122233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..++..+..+...|+..-..+...+.++...+..+...
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544444
No 337
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.90 E-value=74 Score=30.26 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=7.2
Q ss_pred HhhhhHHHHHHHH
Q 005057 590 FQRHKDDLQRLEQ 602 (716)
Q Consensus 590 ~qr~k~~l~~Lek 602 (716)
++.++.|+..++.
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 4455566665554
No 338
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.84 E-value=1.4e+02 Score=33.51 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=8.5
Q ss_pred cHHHHHHHHHhhHHHH
Q 005057 159 DLRQLEEYSLAGMVCL 174 (716)
Q Consensus 159 ~l~~i~~rSL~gLVaf 174 (716)
.-+..+++.|++|...
T Consensus 97 G~Ge~vc~VLd~Lad~ 112 (359)
T PF10498_consen 97 GSGEHVCYVLDQLADE 112 (359)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3445556666655443
No 339
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=75.84 E-value=1.2e+02 Score=33.56 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhH
Q 005057 374 IVVTMLHQIKDLERQV-----KERKEWAHQKAMQAARKLSNDLTELKMLRMER 421 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~-----~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ek 421 (716)
++-.++.....+-+++ ..-.+|..+.+-++-.+|..-...|...|.++
T Consensus 148 ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 148 INQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555544444343333 34456888888888877777777777776654
No 340
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=75.61 E-value=1.6e+02 Score=34.06 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
++++-++.+..-++-...-.++.+.++..|..+++.+|-.
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~n 426 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKAN 426 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 4555555555444333334444444444454444444433
No 341
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.56 E-value=90 Score=31.06 Aligned_cols=22 Identities=18% Similarity=0.557 Sum_probs=12.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
..+.++.+..+++++..|+.+.
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666665543
No 342
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.48 E-value=2.1e+02 Score=35.36 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHh
Q 005057 65 DHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKA 108 (716)
Q Consensus 65 ~~~w~~~~~~~L~~~LL~~I~~~Y~~Al~rLp~~~~~~~~a~~a 108 (716)
..+|.+-. ..++|. -+.++..|+..|-+...+|..
T Consensus 273 v~~W~~Qr--------v~Nv~~-~Lqivr~lVsP~Nt~~~~~q~ 307 (970)
T KOG0946|consen 273 VFGWSTQR--------VQNVIE-ALQIVRSLVSPGNTSSITHQN 307 (970)
T ss_pred cccccHHH--------HHHHHH-HHHHHHHhcCCCCcHHHHHHH
Confidence 34787665 445543 467888888888877765554
No 343
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=75.38 E-value=2.5 Score=37.28 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=34.7
Q ss_pred cccccccc-----cccceEEecCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 660 RDCIICLK-----DEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 660 ~~C~IC~~-----~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
..|+-|.. .+--++.-.|.|. |=..|+.+|+.+ ...||.||+++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHa-FH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHA-FHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchH-HHHHHHHHHHhh-CCCCCCCCceeE
Confidence 35666654 2234566779999 999999999988 568999999874
No 344
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.30 E-value=57 Score=34.24 Aligned_cols=13 Identities=8% Similarity=0.483 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 005057 373 EIVVTMLHQIKDL 385 (716)
Q Consensus 373 e~~~~l~~~~~~l 385 (716)
|++-+++..++.+
T Consensus 73 eLA~kf~eeLrg~ 85 (290)
T COG4026 73 ELAEKFFEELRGM 85 (290)
T ss_pred HHHHHHHHHHHHh
Confidence 3455544444433
No 345
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=1.2 Score=47.32 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=37.5
Q ss_pred CCcccccccccccc----------ceEEecCCCcccChhhHHHhcccC-CCCCCCCCcccc
Q 005057 657 NCDRDCIICLKDEV----------SIVFLPCAHQVLCASCSDNYGKKG-KATCPCCRVPIE 706 (716)
Q Consensus 657 ~~~~~C~IC~~~~~----------~vvllpCgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~ 706 (716)
.++..|.||-...- ++--+.|+|+ |=..|+.-|.--+ ..+||.|...+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 46779999986432 3345789999 9999999987553 468999998765
No 346
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=74.97 E-value=5.8 Score=35.51 Aligned_cols=29 Identities=31% Similarity=0.686 Sum_probs=22.8
Q ss_pred ccccccccccc--cceEEecCCCcccChhhHH
Q 005057 659 DRDCIICLKDE--VSIVFLPCAHQVLCASCSD 688 (716)
Q Consensus 659 ~~~C~IC~~~~--~~vvllpCgH~vfC~~C~~ 688 (716)
...|.+|.... ...++.||||. |...|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 45799999865 44667899998 8888864
No 347
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=74.72 E-value=1.8e+02 Score=34.12 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=8.7
Q ss_pred cHHHHHHHHHhHHH
Q 005057 410 DLTELKMLRMEREE 423 (716)
Q Consensus 410 ~~~Elk~LR~ekee 423 (716)
|...+..||.+++.
T Consensus 179 ~~~vv~~l~~~~dk 192 (489)
T PF05262_consen 179 DEKVVQELREDKDK 192 (489)
T ss_pred cHHHHHHHhhcccc
Confidence 45666666666654
No 348
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.66 E-value=97 Score=31.02 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 005057 561 VEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLK 608 (716)
Q Consensus 561 ~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk 608 (716)
...++.+..+.......+......+...+...++.+|..++-++=+|-
T Consensus 111 ~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 111 LNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555666666666666666666666555553
No 349
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.66 E-value=89 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
+..+-+++..|..++...+.+|..|+......
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333444444444444555555555444433
No 350
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.66 E-value=1.1e+02 Score=31.54 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 469 ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (716)
Q Consensus 469 e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeE 518 (716)
....++.+.+-+|..+-+.+.....+....+..=+..+.+..++..|+++
T Consensus 61 ~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 61 KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444444433333333333333333333333333
No 351
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.16 E-value=35 Score=29.13 Aligned_cols=55 Identities=22% Similarity=0.440 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK 523 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k 523 (716)
.+|.+|..+- ..+.+|.++|..|+.+.. .|..+.+.|.+..+.++
T Consensus 4 ~Le~kle~Li-------~~~~~L~~EN~~Lr~q~~----------------------------~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 4 ALAAQVEHLL-------EYLERLKSENRLLRAQEK----------------------------TWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 4555554444 677888888888888766 45555556666666666
Q ss_pred HHHHHHHHHH
Q 005057 524 EKIKELQQCL 533 (716)
Q Consensus 524 ~KI~~le~el 533 (716)
++|..+-..+
T Consensus 49 ~rvEamI~RL 58 (65)
T TIGR02449 49 QKVEAMITRL 58 (65)
T ss_pred HHHHHHHHhh
Confidence 6655544433
No 352
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.98 E-value=1.2e+02 Score=31.87 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005057 465 RLETENAEIRAEMEASK 481 (716)
Q Consensus 465 ~Le~e~a~lr~e~Ea~k 481 (716)
+-+-+|+.+|+-+..++
T Consensus 109 rkEl~nAlvRAGLktL~ 125 (290)
T COG4026 109 RKELKNALVRAGLKTLQ 125 (290)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444555555444443
No 353
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.67 E-value=69 Score=38.13 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
..+++..+++.++++..+...-...+.++.+++..|+.+++.++.+.......=+++.. .-.++..+++++..-..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~----~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRA----RDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45666666666666665554444455555555555555555554444322211111111 12344556666666666
Q ss_pred HHHHHHHHHHHHHH
Q 005057 518 EIANEKEKIKELQQ 531 (716)
Q Consensus 518 El~~~k~KI~~le~ 531 (716)
.++.++.++.++.+
T Consensus 496 ~ve~L~~~l~~l~k 509 (652)
T COG2433 496 RVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777666663
No 354
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.65 E-value=2.3e+02 Score=34.85 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHH
Q 005057 594 KDDLQRLEQEFSR 606 (716)
Q Consensus 594 k~~l~~LekELe~ 606 (716)
++.|..|+++|.+
T Consensus 694 k~kieal~~qik~ 706 (762)
T PLN03229 694 KEKIEALEQQIKQ 706 (762)
T ss_pred HHHHHHHHHHHHH
Confidence 3566677776654
No 355
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=73.62 E-value=1.5e+02 Score=32.68 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 005057 437 TTMKRLSEMENALRKASGQV 456 (716)
Q Consensus 437 ~t~krLselE~el~k~~~ql 456 (716)
+-.+|+..+|.+-..++.+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666666665555433
No 356
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.91 E-value=2.1e+02 Score=34.04 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005057 457 DRANAAVRRLETENAEIRAEMEA 479 (716)
Q Consensus 457 e~a~~~~~~Le~e~a~lr~e~Ea 479 (716)
++.|..-.+|.++...+..+.+.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 357
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=72.54 E-value=2 Score=46.84 Aligned_cols=48 Identities=27% Similarity=0.762 Sum_probs=33.3
Q ss_pred ccccccccccc--cceEEe--cCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDE--VSIVFL--PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~--~~vvll--pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
+..|+.|++.. .+--|. |||-+ +|..|...+.+.=...||.||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 44599999743 223344 56777 89999877655445689999987754
No 358
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.52 E-value=1.8e+02 Score=33.27 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=18.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhcccccc
Q 005057 586 IEIDFQRHKDDLQRLEQEFSRLKASAESNEQN 617 (716)
Q Consensus 586 aE~E~qr~k~~l~~LekELe~Lk~k~~s~~~s 617 (716)
...++...+.++..++.++...+...+...+.
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~ 320 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDSQKGVIK 320 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 34445555666667777776666555444433
No 359
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=72.37 E-value=2.5e+02 Score=34.78 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=72.8
Q ss_pred cCCCCChhh------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcH-HHHHHHHHhHHHHHHHHHhhhhhH
Q 005057 364 ETITDDQKD------EIVVTMLHQIKDL-ERQVKERKEWAHQKAMQAARKLSNDL-TELKMLRMEREETQRLKKGKQTLE 435 (716)
Q Consensus 364 ~~v~~d~k~------e~~~~l~~~~~~l-~~~~~~~~~wa~~k~~qaa~~L~~~~-~Elk~LR~ekee~e~lkkekqeLE 435 (716)
+++-.|.|- +-+-++..+..+| +..|+.-.|-|..+-.|.-.....+. .++.. .+.+.+.+..++++++
T Consensus 953 eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe---~kKe~eaiineiee~e 1029 (1424)
T KOG4572|consen 953 EISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEE---KKKELEAIINEIEELE 1029 (1424)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHH---HHHHHHHHHHHHHHHH
Confidence 666666652 2223333444443 34555556655554443322111110 11111 1223344445555555
Q ss_pred HHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 436 DTTM----KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (716)
Q Consensus 436 e~t~----krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq 511 (716)
..-+ +.+-+.|-...+.+ -.--+++.+.+.++++|+.++.-..+ .+.+.+.....-.|.+
T Consensus 1030 aeIiQekE~el~e~efka~d~S-------d~r~kie~efAa~eaemdeik~~~~e---------drakqkei~k~L~ehe 1093 (1424)
T KOG4572|consen 1030 AEIIQEKEGELIEDEFKALDES-------DPRAKIEDEFAAIEAEMDEIKDGKCE---------DRAKQKEIDKILKEHE 1093 (1424)
T ss_pred HHHHhcccchHHHHHhhhcccc-------CcchhHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHHHHHHHHH
Confidence 3322 33444444333333 23456788999999999977754332 3333344444445666
Q ss_pred HHHHHHHHHHHHHHHH
Q 005057 512 KAKLQEEIANEKEKIK 527 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~ 527 (716)
...|..|++..+++|.
T Consensus 1094 lenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1094 LENLRNEIEKLNDKIK 1109 (1424)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7778888888888854
No 360
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.35 E-value=2.3e+02 Score=34.24 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005057 516 QEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQ 560 (716)
Q Consensus 516 qeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~ 560 (716)
+.++.+++.+|+...++........+-+-+.|.++......+...
T Consensus 138 ~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 138 KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777766666666666666665555544443
No 361
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.99 E-value=47 Score=38.76 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 005057 444 EMENALRKAS 453 (716)
Q Consensus 444 elE~el~k~~ 453 (716)
+++.+|..+.
T Consensus 75 ~l~~~l~~l~ 84 (525)
T TIGR02231 75 ELRKQIRELE 84 (525)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 362
>PRK10698 phage shock protein PspA; Provisional
Probab=71.68 E-value=1.3e+02 Score=31.32 Aligned_cols=95 Identities=9% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR-----EKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~er-----ekk~~k~l~~~Ekq~~~LqeEl 519 (716)
++.-+.....++......+-..+.....+..+++.....+.+-+..-.-+... .+.-+.+....+.++..|+.++
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455555555555555555555555555444444442 3333344444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005057 520 ANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 520 ~~~k~KI~~le~el~qakq~ 539 (716)
...+..+.++...+.+++..
T Consensus 109 ~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 109 TLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444
No 363
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=71.62 E-value=1.6e+02 Score=32.22 Aligned_cols=18 Identities=6% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 516 QEEIANEKEKIKELQQCL 533 (716)
Q Consensus 516 qeEl~~~k~KI~~le~el 533 (716)
+.++++.+..+...+.++
T Consensus 151 ~~~~~~a~~~~~~a~~~l 168 (346)
T PRK10476 151 AQQVDQARTAQRDAEVSL 168 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 364
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=71.46 E-value=2.5 Score=39.66 Aligned_cols=44 Identities=27% Similarity=0.574 Sum_probs=24.5
Q ss_pred ccccccccccc-----cceEEecCCCcccChhhHHHhcccCCCCCCCCCc
Q 005057 659 DRDCIICLKDE-----VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRV 703 (716)
Q Consensus 659 ~~~C~IC~~~~-----~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~ 703 (716)
...|.+|...+ ...+-..|.|. +|..|.........-.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 45899998754 23445667777 7888755422222224666654
No 365
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=70.73 E-value=1.8 Score=46.57 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=26.7
Q ss_pred CccccccccccccceEEecC-----CCcccChhhHHHhcccCCCCCCCCCccccceEEee
Q 005057 658 CDRDCIICLKDEVSIVFLPC-----AHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVF 712 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpC-----gH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~ 712 (716)
....|+||-..+.-.++..= .|. +|.-|...|...|. .||.|...-...+..|
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~-~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRI-KCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TT-S-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCC-CCcCCCCCCCcceeeE
Confidence 35799999998877766554 345 89999999977754 8999998766655554
No 366
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.65 E-value=77 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~el~q 535 (716)
..+..-+..|...+...+..+..++.++..
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 367
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.53 E-value=1.8e+02 Score=32.28 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 371 KDEIVVTMLHQIKDLERQVKERKE 394 (716)
Q Consensus 371 k~e~~~~l~~~~~~l~~~~~~~~~ 394 (716)
|-|.++.|...+..=+.+-...+-
T Consensus 7 K~eAL~IL~~eLe~cq~ErDqyKl 30 (319)
T PF09789_consen 7 KSEALLILSQELEKCQSERDQYKL 30 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665555544444444433
No 368
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=70.42 E-value=3.2 Score=40.00 Aligned_cols=49 Identities=20% Similarity=0.575 Sum_probs=33.9
Q ss_pred cccccccccccc---ceEEecCCCcc-----cChhhHHHhcccCCCCCCCCCccccceEEeec
Q 005057 659 DRDCIICLKDEV---SIVFLPCAHQV-----LCASCSDNYGKKGKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~~---~vvllpCgH~v-----fC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~ 713 (716)
..+|.||+++-. -+|.++|+-.. ||..|...|...+ =|=|+...|+-|+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~------~rDPfnR~I~y~F 82 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER------NRDPFNRNIKYWF 82 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc------cCCCcccceEEEE
Confidence 568999998643 47888898653 8999999983221 2345666666554
No 369
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=70.37 E-value=1.4e+02 Score=30.85 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=36.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 425 QRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 425 e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
.+...++...|...++-|.+||++-.+-..-.+..+--..=|+.+-.-|+.++|..
T Consensus 98 ~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~E 153 (192)
T PF09727_consen 98 RRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQE 153 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777788888888876655555555555555666666666655533
No 370
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=70.25 E-value=2.2e+02 Score=33.26 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHhHH---------------H-----HHHHHHhh---hhhHHHHHHHHHHHHHHH
Q 005057 393 KEWAHQKAMQAARKLSNDLTELKMLRMERE---------------E-----TQRLKKGK---QTLEDTTMKRLSEMENAL 449 (716)
Q Consensus 393 ~~wa~~k~~qaa~~L~~~~~Elk~LR~eke---------------e-----~e~lkkek---qeLEe~t~krLselE~el 449 (716)
..-++.++|.-+.--.+++.|=+.|+.+.+ + ++||+-|+ +.+|.-+-.||--||-++
T Consensus 527 g~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmElst~kDlekG~Aeki~~me~Ei 606 (790)
T PF07794_consen 527 GVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKMELSTSKDLEKGYAEKIGFMEMEI 606 (790)
T ss_pred chhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccceeecccccccchhhhhheeeccccchhhhhHhhhhhhhhhh
Confidence 455666777777777889999999886522 2 56776554 556777778999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 450 RKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 450 ~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
.-+...+.-+.+.+..||+...++..+.-
T Consensus 607 ~glq~DkQ~ar~qIh~Le~~Reelsk~V~ 635 (790)
T PF07794_consen 607 GGLQADKQTARNQIHRLEQRREELSKRVM 635 (790)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777888888877666655444
No 371
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.16 E-value=2.3e+02 Score=33.30 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=14.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhh
Q 005057 587 EIDFQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 587 E~E~qr~k~~l~~LekELe~Lk~ 609 (716)
|.|+..+...+..++.++.+.+.
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s 358 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKS 358 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666667666666655444
No 372
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.11 E-value=2.1e+02 Score=32.94 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005057 374 IVVTMLHQIKDLERQVK 390 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~ 390 (716)
....|-.|+.+++.+|.
T Consensus 162 ~~~fl~~ql~~~~~~L~ 178 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLE 178 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 373
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.09 E-value=1e+02 Score=31.58 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
|.+|+.+...+..+.+..+..+.++......+..+.+..+.+
T Consensus 140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443344444444444455544444444444444433
No 374
>PLN02939 transferase, transferring glycosyl groups
Probab=69.90 E-value=3.1e+02 Score=34.86 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRA-----------NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK 496 (716)
Q Consensus 442 LselE~el~k~~~qle~a-----------~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~e 496 (716)
..-+|.++.+++.++..- .....-|..||..|+..++.+|.+..+.+..-+.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (977)
T PLN02939 196 VEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFK 261 (977)
T ss_pred chhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344677777777766321 2234556778899999999998887776655444433
No 375
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=69.74 E-value=1.8 Score=46.60 Aligned_cols=48 Identities=31% Similarity=0.677 Sum_probs=33.7
Q ss_pred Cccccccccccccc---eEEecCCCcccChhhHHHhccc----------------------CCCCCCCCCcccc
Q 005057 658 CDRDCIICLKDEVS---IVFLPCAHQVLCASCSDNYGKK----------------------GKATCPCCRVPIE 706 (716)
Q Consensus 658 ~~~~C~IC~~~~~~---vvllpCgH~vfC~~C~~~~~~~----------------------r~~~CP~CR~~i~ 706 (716)
....|+||+-.+.+ .+.++|.|. |=+.|..+++.- -...||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 35789999876543 566899999 878886654310 1235999998874
No 376
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.71 E-value=1.9e+02 Score=32.24 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 005057 424 TQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK 503 (716)
Q Consensus 424 ~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k 503 (716)
...++..---|-...-.+|.|-.+-|++.+ ..+++-..+-..|+..-+.++-++-...-.+.+..-.-+..=.
T Consensus 62 e~qlk~aa~~llq~kirk~~e~~eglr~i~-------es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 62 EKQLKTAAGQLLQTKIRKITEKDEGLRKIR-------ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE-QKAKELLLAQVEEERRSKEGAEAGNKRKLEAL 582 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe-e~~keea~~~~e~er~erE~aE~~~k~k~e~~ 582 (716)
-+..++++.+.|+-++.+..+...+.+++-+++.....+..+..+.. .+.......+.+..++....+-
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~---------- 204 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIG---------- 204 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH----------
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 005057 583 RLKIEIDFQRHKDDLQRLEQEFSRL 607 (716)
Q Consensus 583 ~~KaE~E~qr~k~~l~~LekELe~L 607 (716)
++...+++|-.|+..+
T Consensus 205 ---------~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 205 ---------KLESKVQDLMYEIRNL 220 (401)
T ss_pred ---------HHHHHHHHHHHHHHHH
No 377
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=69.70 E-value=2.6 Score=33.63 Aligned_cols=46 Identities=24% Similarity=0.701 Sum_probs=26.4
Q ss_pred ccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceE
Q 005057 661 DCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRI 709 (716)
Q Consensus 661 ~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i 709 (716)
-|..|.=..+. ++.|...-+|-.|...+... ...||+|..++...+
T Consensus 4 nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SS--EEE-SS-EEEHHHHHHT-SS-SSEETTTTEE----S
T ss_pred cChhhhhcCCC--eeeecchhHHHHHHHHHhcc-ccCCCcccCcCcccc
Confidence 47888866555 45687665999999998776 668999999887654
No 378
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.65 E-value=3.3 Score=46.27 Aligned_cols=54 Identities=20% Similarity=0.408 Sum_probs=39.0
Q ss_pred cccccccccc---ccceEEecCCCcccChhhHHHhcccCC--CCCCCCCccc--cceEEeec
Q 005057 659 DRDCIICLKD---EVSIVFLPCAHQVLCASCSDNYGKKGK--ATCPCCRVPI--EQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~---~~~vvllpCgH~vfC~~C~~~~~~~r~--~~CP~CR~~i--~~~i~i~~ 713 (716)
-..|+|=.+. ..-.+-+.|||+ .|..-+..+...+. -+||.|-... ....+|||
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred eeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 3578886642 233456789999 99999999988876 6899998654 34455554
No 379
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.30 E-value=68 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=18.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
||.++..++..++.+...+...+.++..|+.+.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd 36 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERD 36 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555554
No 380
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=69.09 E-value=1.5e+02 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=14.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.++|-+++.--.+++.+++...
T Consensus 132 i~ky~e~~~~~~~~l~N~k~~k 153 (251)
T COG5415 132 IQKYSEELNAKYQELNNLKTEK 153 (251)
T ss_pred HHHhccchhHHHHHHhhHHHHh
Confidence 4556666677777787777654
No 381
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.96 E-value=1.5e+02 Score=36.72 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=6.8
Q ss_pred hcCchhhhhhcc
Q 005057 194 SDLHVGRASSIE 205 (716)
Q Consensus 194 ad~dl~~A~~~~ 205 (716)
+.+|+..|.+..
T Consensus 268 ~~lD~l~a~a~~ 279 (771)
T TIGR01069 268 DFLDSLQARARY 279 (771)
T ss_pred HHHHHHHHHHHH
Confidence 566666665433
No 382
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=68.95 E-value=1.7e+02 Score=32.27 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=5.7
Q ss_pred cccccccccc
Q 005057 659 DRDCIICLKD 668 (716)
Q Consensus 659 ~~~C~IC~~~ 668 (716)
...|.+=..-
T Consensus 325 gK~C~l~ikL 334 (387)
T COG3064 325 GKTCRLRIKL 334 (387)
T ss_pred CceeEEEEEE
Confidence 4577765443
No 383
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.57 E-value=52 Score=38.07 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el 533 (716)
+.+..+|..|++|-+.++.........+..+.+-++. .+.++...|+.++...+..|.+++.++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~------~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ------ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444333333333333333322 222233344444444444444444443
No 384
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.54 E-value=1.6e+02 Score=31.04 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=7.7
Q ss_pred HHhhhhHHHHHHHHH
Q 005057 589 DFQRHKDDLQRLEQE 603 (716)
Q Consensus 589 E~qr~k~~l~~LekE 603 (716)
|...+++++..++++
T Consensus 89 ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 89 EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555554
No 385
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.47 E-value=1.7e+02 Score=31.10 Aligned_cols=167 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
+.++-.++......+......+..++.+...|..+++.++.++.........+...-...+.+.+.++..+..+...+..
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-----HHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhH
Q 005057 522 EKEKIKELQQ-----CLARIQQDQKETESKWRQE-QKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKD 595 (716)
Q Consensus 522 ~k~KI~~le~-----el~qakq~~~~~e~~~kqe-e~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~ 595 (716)
.-.++..+-. .-..+...+++++.-.++. ...-......++.|..+.+.+-...+..+......-+.=...+++
T Consensus 106 l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~ 185 (264)
T PF06008_consen 106 LIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRD 185 (264)
T ss_pred HHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 005057 596 DLQRLEQEFSRLK 608 (716)
Q Consensus 596 ~l~~LekELe~Lk 608 (716)
.|....-.|..++
T Consensus 186 ~L~~~~~kL~Dl~ 198 (264)
T PF06008_consen 186 DLNDYNAKLQDLR 198 (264)
T ss_pred HHHHHHHHHHHHH
No 386
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.96 E-value=1.9e+02 Score=31.68 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHH
Q 005057 377 TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRL 442 (716)
Q Consensus 377 ~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krL 442 (716)
.+=....+|++-||---+---+.|-|-...|..-.+|..+|..+-+....-+..+..=.++++.||
T Consensus 35 i~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRL 100 (305)
T PF14915_consen 35 ILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRL 100 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334455679999999999999999999999999999999999877664444444444345565555
No 387
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=67.83 E-value=1.3e+02 Score=29.72 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 005057 412 TELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTC 491 (716)
Q Consensus 412 ~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~ 491 (716)
..+.+.++.-+++++-+-+..+-..+..-|+.+-...|...+..++ .-..=.+.+.+.+|..++..++++.-..++|
T Consensus 31 sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE---~l~dP~RkEv~~vRkkID~vNreLkpl~~~c 107 (159)
T PF04949_consen 31 SALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE---VLADPMRKEVEMVRKKIDSVNRELKPLGQSC 107 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 005057 492 LEVAKREKKCLKRLLAWEKQKAKLQEEIANE-----KEKIKELQQ 531 (716)
Q Consensus 492 ~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~-----k~KI~~le~ 531 (716)
++.-+--+..+..+..-.+++..|-..|.++ +.+++.|++
T Consensus 108 qKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEE 152 (159)
T PF04949_consen 108 QKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEE 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.45 E-value=96 Score=31.61 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
.+.++..+++++..|+.++..
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666665553
No 389
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.42 E-value=2.7e+02 Score=33.11 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKE-----LQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGA 571 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~-----le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~a 571 (716)
.++++..+++++......|.+ .+..+..+...++++-+....|-.++.............++.+
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~ 318 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHA 318 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555566666666655555433 3344445555555555555555444444333333333333333
No 390
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.36 E-value=1.1e+02 Score=28.49 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 495 AKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 495 ~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.++.....+.....+.++..|..++...+..+..++..+.+.+..
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566777778888888888888888877766554
No 391
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=67.33 E-value=1.8e+02 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQ 530 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le 530 (716)
.+...++.+...++.+++.+.++..++
T Consensus 44 ~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 70 (250)
T PRK14474 44 RWQDAEQRQQEAGQEAERYRQKQQSLE 70 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 392
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=67.19 E-value=2.7e+02 Score=33.02 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005057 422 EETQRLKKGKQTLEDTTMKRLSEMENAL 449 (716)
Q Consensus 422 ee~e~lkkekqeLEe~t~krLselE~el 449 (716)
.+..++.+...++-+....++-+|-+.+
T Consensus 164 ~e~~~l~~~~~e~~~~~~~r~~e~Q~qv 191 (591)
T KOG2412|consen 164 AENIRLVEKLSETRKEVKRRLLEEQNQV 191 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333444444555444
No 393
>PHA03096 p28-like protein; Provisional
Probab=67.17 E-value=2.8 Score=45.38 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=29.4
Q ss_pred cccccccccc--------ceEEecCCCcccChhhHHHhcccC--CCCCCCCCc
Q 005057 661 DCIICLKDEV--------SIVFLPCAHQVLCASCSDNYGKKG--KATCPCCRV 703 (716)
Q Consensus 661 ~C~IC~~~~~--------~vvllpCgH~vfC~~C~~~~~~~r--~~~CP~CR~ 703 (716)
.|.||++... .-++-.|.|. ||..|+..|...+ ...||.||.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 7999998532 2345579999 9999999876542 345666654
No 394
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.12 E-value=2.6e+02 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 005057 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL 502 (716)
Q Consensus 443 selE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~ 502 (716)
.+++.++..+..++.........++.++++++..++..+..+.+..+.+.+..++-+...
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555556666777777777777666666666655555554444433
No 395
>PRK11519 tyrosine kinase; Provisional
Probab=66.37 E-value=3.1e+02 Score=33.51 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 005057 386 ERQVKERKEWAHQKAMQAARKLSNDLTEL 414 (716)
Q Consensus 386 ~~~~~~~~~wa~~k~~qaa~~L~~~~~El 414 (716)
+.=++...+..++..-++..-|.+++.++
T Consensus 251 ~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l 279 (719)
T PRK11519 251 RNYLEQNIERKSEEASKSLAFLAQQLPEV 279 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666555443
No 396
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.23 E-value=2.9e+02 Score=33.05 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 510 KQKAKLQEEIANEKE--------KIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 510 kq~~~LqeEl~~~k~--------KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
+++..+|.+..+.+. ++..|+++|.++....+-+.-++++.
T Consensus 437 ~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~ 485 (852)
T KOG4787|consen 437 TELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKL 485 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Confidence 444555555555443 35667777777776666665555544
No 397
>PRK11281 hypothetical protein; Provisional
Probab=65.21 E-value=4.1e+02 Score=34.45 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHH
Q 005057 397 HQKAMQAARKLSNDLTELKMLR 418 (716)
Q Consensus 397 ~~k~~qaa~~L~~~~~Elk~LR 418 (716)
.+++-+|.+++..-..++..++
T Consensus 86 ~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 86 KQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 4444555555554444544444
No 398
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.19 E-value=3.6e+02 Score=33.86 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=9.0
Q ss_pred cHHHHHHHHHhhHHHHHH
Q 005057 159 DLRQLEEYSLAGMVCLLQ 176 (716)
Q Consensus 159 ~l~~i~~rSL~gLVafL~ 176 (716)
.+.....++..+++.+|.
T Consensus 156 glte~tv~~~~q~~~~L~ 173 (913)
T KOG0244|consen 156 GLTEKTVRMKLQLLSRLE 173 (913)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 344444555555555554
No 399
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.16 E-value=83 Score=31.05 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 005057 438 TMKRLSEMENALRKASGQV 456 (716)
Q Consensus 438 t~krLselE~el~k~~~ql 456 (716)
+...+.+|+.++..++.++
T Consensus 70 s~eel~~ld~ei~~L~~el 88 (169)
T PF07106_consen 70 SPEELAELDAEIKELREEL 88 (169)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 3345666666666666444
No 400
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=65.05 E-value=54 Score=34.90 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~q 535 (716)
-+.+.++|++ .+++.||..+..+|..++++-+.
T Consensus 245 naY~~~ieke-~q~raeL~acEEkl~kmeE~Qa~ 277 (311)
T PF04642_consen 245 NAYLAAIEKE-NQARAELNACEEKLKKMEEEQAE 277 (311)
T ss_pred chHHHHHhhH-HHHHHHHHHHHHHHhcccHHHHH
Confidence 3444555554 45778888888888888777443
No 401
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.93 E-value=2.9e+02 Score=32.60 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHhHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH-------------------------
Q 005057 403 AARKLSNDLTELKMLRMEREE-TQRLKKGKQTLEDTTMKRLSEMENALRKASGQV------------------------- 456 (716)
Q Consensus 403 aa~~L~~~~~Elk~LR~ekee-~e~lkkekqeLEe~t~krLselE~el~k~~~ql------------------------- 456 (716)
.++.+..-...+..|++|+|. .=...-.+-.|| .--+|+.++++++.+.....
T Consensus 307 L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLE-KEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e 385 (518)
T PF10212_consen 307 LAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLE-KENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQSVDE 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccchhhhhhhccccccccccccccccc
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 457 -----------------------DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (716)
Q Consensus 457 -----------------------e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~ 513 (716)
.+.+.-..--+.++.+|-.++..+.-++.-...-|+ ...+++...|+++.
T Consensus 386 ~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~-------aL~~rL~~aE~ek~ 458 (518)
T PF10212_consen 386 PLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECR-------ALQKRLESAEKEKE 458 (518)
T ss_pred ccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAG 574 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~ 574 (716)
.+.+++..+.++|..+++++.-++.- --.|.....|.....-+...++.++++++
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr~N------YE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTRRN------YEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.88 E-value=2.6e+02 Score=31.99 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=3.2
Q ss_pred HHHHhhc
Q 005057 128 NSLAYLN 134 (716)
Q Consensus 128 Nti~~~~ 134 (716)
|+.-|++
T Consensus 30 nv~eyLk 36 (395)
T PF10267_consen 30 NVAEYLK 36 (395)
T ss_pred hHHHHHH
Confidence 4444553
No 403
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.83 E-value=3.7e+02 Score=33.82 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cHHHHHHHHHh
Q 005057 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSN--DLTELKMLRME 420 (716)
Q Consensus 374 ~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~--~~~Elk~LR~e 420 (716)
....|....++--.+..+.++-......|+.++|.. +..+++.|+.-
T Consensus 1038 q~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~ 1086 (1189)
T KOG1265|consen 1038 QTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKES 1086 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455556666666666777766653 33444444433
No 404
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.68 E-value=3.4e+02 Score=33.28 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhcHHHH
Q 005057 393 KEWAHQKAMQAARKLSNDLTEL 414 (716)
Q Consensus 393 ~~wa~~k~~qaa~~L~~~~~El 414 (716)
-+..++...++..-|.+++.++
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l 279 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEV 279 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555444433
No 405
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=64.02 E-value=2.3e+02 Score=31.13 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH---HHHHHHHHHH--------HHHHHHHHH
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT---CLEVAKREKK--------CLKRLLAWE 509 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~---~~e~~erekk--------~~k~l~~~E 509 (716)
.|..|-.+...+...++.......+|++++.-.+..+.++-.....+.++ .+-+..+++- .--++..+.
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 34444445555555566666667777887777777777666555555543 1111222222 111233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.....|-++|.++..|+..|+-++..++-+
T Consensus 144 d~ne~LsQqLskaesK~nsLe~elh~trda 173 (305)
T PF14915_consen 144 DNNEILSQQLSKAESKFNSLEIELHHTRDA 173 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666667777766666666665544
No 406
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.98 E-value=2.5 Score=50.67 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=36.6
Q ss_pred cccccccccccc----eEEec---CCCcccChhhHHHhccc-----CCCCCCCCCccccceEEeecc
Q 005057 660 RDCIICLKDEVS----IVFLP---CAHQVLCASCSDNYGKK-----GKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 660 ~~C~IC~~~~~~----vvllp---CgH~vfC~~C~~~~~~~-----r~~~CP~CR~~i~~~i~i~~a 714 (716)
..|.+|...+.+ .-+.| |+|. +|..|+..+..+ ....|++|..-|..+.++-.+
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT 162 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT 162 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc
Confidence 345555544433 33445 9999 999999997654 345789999888777665443
No 407
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.71 E-value=89 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=15.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (716)
Q Consensus 446 E~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea 479 (716)
+.++++....++.++..+..+..+.+.+..|++.
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3333333334444444444444444444444443
No 408
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=63.25 E-value=3.6 Score=38.52 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 511 QKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 511 q~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
++..|..++..++.++..++.++.+.
T Consensus 33 ~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 33 ELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33344444444444444444444433
No 409
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=62.96 E-value=1.9e+02 Score=29.95 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005057 488 VTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK-----EKIKELQQCLARIQQDQKETESKWRQ 549 (716)
Q Consensus 488 ~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k-----~KI~~le~el~qakq~~~~~e~~~kq 549 (716)
..+++.+...-.+.....+..+..+.+.+..+++.+ .|+.+++.++..+..+..+...++..
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~ 174 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEE 174 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666555542 35666666666655554444443333
No 410
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.92 E-value=3.6e+02 Score=33.02 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=31.3
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhH
Q 005057 372 DEIVVTML-HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMER 421 (716)
Q Consensus 372 ~e~~~~l~-~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ek 421 (716)
++++..-+ .++.+=..+...=.+|-++.+-.+..+|..--..|...|.++
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33443333 334444444455578888888888888887777777777654
No 411
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.79 E-value=38 Score=27.97 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
|+.++|+++.++. ..+.-++.++..++.+.+.++......-..|+
T Consensus 1 Ri~elEn~~~~~~-------~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 1 RIDELENELPRIE-------SSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999988877 34566777777777777766655444443333
No 412
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.73 E-value=65 Score=32.47 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTT 490 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~ 490 (716)
..+..+-.+...++...++.+.++....+.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~ 147 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEA 147 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555556666666666666555544433
No 413
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.40 E-value=2.1e+02 Score=30.20 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 404 ARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 404 a~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
+++|+-++.|++.|.+.-.+++..++..-+|-+..-.+.+-+|.++.-++
T Consensus 50 ar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q 99 (246)
T KOG4657|consen 50 ARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQ 99 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666555555544444444444444455555554444
No 414
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=62.04 E-value=4.1e+02 Score=33.43 Aligned_cols=8 Identities=50% Similarity=0.613 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 005057 412 TELKMLRM 419 (716)
Q Consensus 412 ~Elk~LR~ 419 (716)
-||+.||.
T Consensus 953 KeL~~LrK 960 (1189)
T KOG1265|consen 953 KELRDLRK 960 (1189)
T ss_pred HHHHHHHH
Confidence 34444544
No 415
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.37 E-value=3.6e+02 Score=32.50 Aligned_cols=239 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcHHHHHH--------HHHhHHHHHHHHHhhhhhH
Q 005057 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQ------KAMQAARKLSNDLTELKM--------LRMEREETQRLKKGKQTLE 435 (716)
Q Consensus 370 ~k~e~~~~l~~~~~~l~~~~~~~~~wa~~------k~~qaa~~L~~~~~Elk~--------LR~ekee~e~lkkekqeLE 435 (716)
.++.....+..++.+|+.++++-..=... .+-.....+..++.+++. +-.++++.+.-+++.+.--
T Consensus 199 ~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~ 278 (650)
T TIGR03185 199 KKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAAR 278 (650)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH----------HHHHHhhhHHHH-----HHHHHHHHHHH------------------HHHHHHHHH----
Q 005057 436 DTTMKRLSEME----------NALRKASGQVDR-----ANAAVRRLETE------------------NAEIRAEME---- 478 (716)
Q Consensus 436 e~t~krLselE----------~el~k~~~qle~-----a~~~~~~Le~e------------------~a~lr~e~E---- 478 (716)
...++.+.++- .-+..+..|++. ....+..+-.+ ...+...+.
T Consensus 279 ~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~ 358 (650)
T TIGR03185 279 KANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDK 358 (650)
T ss_pred HHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcc
Q ss_pred --------HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHH
Q 005057 479 --------ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL--QQCLARIQQDQKETESKWR 548 (716)
Q Consensus 479 --------a~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l--e~el~qakq~~~~~e~~~k 548 (716)
.+.....+....-.-..........++..+-+++..++.++.....+|... .+.+.++....+++..+..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 359 PATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred cccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 005057 549 QEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 549 qee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~k 610 (716)
+.....+....+++..+.+++.++...++ ...........++......++..-++.++..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (650)
T TIGR03185 439 RSEAEIEELLRQLETLKEAIEALRKTLDE--KTKQKINAFELERAITIADKAKKTLKEFREK 498 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
No 416
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.34 E-value=4.5e+02 Score=33.60 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=7.0
Q ss_pred ccccccccc
Q 005057 659 DRDCIICLK 667 (716)
Q Consensus 659 ~~~C~IC~~ 667 (716)
...|++|-.
T Consensus 501 ~~~cplcgs 509 (1042)
T TIGR00618 501 EEPCPLCGS 509 (1042)
T ss_pred CCCCCCCCC
Confidence 457999986
No 417
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=61.05 E-value=7.2 Score=34.25 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=22.0
Q ss_pred cccccccccccc----ceEEecCCCcc--cChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEV----SIVFLPCAHQV--LCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~----~vvllpCgH~v--fC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|.||-+... --+|+.|.... .|..|..--.+-+...||.|++++.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 457999987532 22455554433 5999988776767889999998775
No 418
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.87 E-value=2.4e+02 Score=30.35 Aligned_cols=6 Identities=0% Similarity=-0.290 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005057 599 RLEQEF 604 (716)
Q Consensus 599 ~LekEL 604 (716)
.++..+
T Consensus 197 ~a~~~l 202 (334)
T TIGR00998 197 TAWLAL 202 (334)
T ss_pred HHHHHh
Confidence 333333
No 419
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=60.86 E-value=36 Score=28.97 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 463 ~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
|.+...+...|=..||.-.+...++.+.|++..+.-+.+.+.+...|+++..+..
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777788888899999999999999999999999999999999998887754
No 420
>PRK11519 tyrosine kinase; Provisional
Probab=60.49 E-value=3.9e+02 Score=32.66 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHH
Q 005057 374 IVVTMLHQIKDLER-QVKERKEWAHQKAMQAARKLSNDLTELKMLRMERE 422 (716)
Q Consensus 374 ~~~~l~~~~~~l~~-~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~eke 422 (716)
++...+.+.-+... +...=.+|-.+.+-++..+|..--..|+..|.++.
T Consensus 249 l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 249 ITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333 34455689999998888888877777777776543
No 421
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=60.00 E-value=2.5e+02 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQA 403 (716)
Q Consensus 370 ~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qa 403 (716)
...+....|..++.+--..+....+++..+--+.
T Consensus 93 ~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ 126 (297)
T PF02841_consen 93 EDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQA 126 (297)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677777777777777777776655433
No 422
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=59.52 E-value=1.3e+02 Score=26.61 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT--TCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 454 ~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~--~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
..++..+..+.++...-..|...++....+..+... ...+.....+ ...++....+.+..+.+-+...+.++..+
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677777777777777777766655443332 1222333444 55555555555555555555555444443
No 423
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=59.34 E-value=27 Score=39.17 Aligned_cols=13 Identities=8% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 005057 377 TMLHQIKDLERQV 389 (716)
Q Consensus 377 ~l~~~~~~l~~~~ 389 (716)
.|+..+.++..+.
T Consensus 44 ~~~~~~E~~Kk~~ 56 (370)
T PF02994_consen 44 YLIMMLEDFKKDF 56 (370)
T ss_dssp -------------
T ss_pred HHHHHHHHhhhhh
Confidence 3455566665543
No 424
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=59.33 E-value=1.9e+02 Score=28.62 Aligned_cols=36 Identities=8% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+....+..+..|...|......++.|..++.+....
T Consensus 65 q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~ 100 (148)
T COG2882 65 QWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREI 100 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777777777777777776665544
No 425
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.25 E-value=60 Score=38.26 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e 493 (716)
.-.|.++|.+-+++..+++.-|.+++++.+.+..-+.|++++|.+.+..+.+++|
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3445556655555555555555555555555555555555555444444444443
No 426
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=59.14 E-value=11 Score=37.43 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=36.7
Q ss_pred CccccccccccccceEEecCCCcc----cChhhHHHhccc-CCCCCCCCCccccceEEeec
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQV----LCASCSDNYGKK-GKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~v----fC~~C~~~~~~~-r~~~CP~CR~~i~~~i~i~~ 713 (716)
....|-||++.... ...||.... .=.+|.+.|... +...|+.|+.++. +.+.+.
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~-i~~~~k 65 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN-IKKNYK 65 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE-EEEecC
Confidence 35789999987643 345776531 125799998866 4568999999884 334443
No 427
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.64 E-value=1.2e+02 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
+..||..+..+- .++..|+.++++|+.+-.
T Consensus 6 l~~LE~ki~~av-------eti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 6 LEQLEEKIQQAV-------ETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334555554444 334444444444444333
No 428
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=58.55 E-value=63 Score=26.00 Aligned_cols=51 Identities=27% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAK 514 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~ 514 (716)
.+.+.+...+-.+++.-.+...++.+.|++..+.-+.+.+.+...|.++..
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566667777777778888889999999999999998888888877664
No 429
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.33 E-value=3.1e+02 Score=30.84 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 489 ~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
.+..++..||+..-.++..+=.+-...+.++++.+.+..+....+.+..
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455666666666666665555555555555555555444444444333
No 430
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=58.30 E-value=2.3e+02 Score=29.22 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
.++.....++-+.+.+.++.+.
T Consensus 91 Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 91 ANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 431
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=58.30 E-value=4.6 Score=51.32 Aligned_cols=51 Identities=25% Similarity=0.677 Sum_probs=38.3
Q ss_pred CCccccccccccc---cceEEecCCCcccChhhHHHhccc---------CCCCCCCCCccccce
Q 005057 657 NCDRDCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKK---------GKATCPCCRVPIEQR 708 (716)
Q Consensus 657 ~~~~~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~---------r~~~CP~CR~~i~~~ 708 (716)
..+..|+||+.+. .-++-+.|+|. |=..|......+ +--.||+|..+|..+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3467899999764 33455889999 999998876554 234699999999764
No 432
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.62 E-value=85 Score=30.74 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKA 553 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~ 553 (716)
|..+.+..+..-.++....+++..|++|+.....-+....+.+.+++...+.....|+++.+.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444455566666667777777777776666666666666655555555555444
No 433
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=57.45 E-value=1.7e+02 Score=27.43 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 507 AWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 507 ~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
.+..-+..|...+...+..|..++.++.+.+.
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~ 96 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRE 96 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555444433
No 434
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.43 E-value=1.1e+02 Score=35.89 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 005057 445 MENALRKAS 453 (716)
Q Consensus 445 lE~el~k~~ 453 (716)
++.++.++.
T Consensus 83 l~~~~~~~~ 91 (525)
T TIGR02231 83 LEAELRDLE 91 (525)
T ss_pred HHHHHHHHH
Confidence 444443333
No 435
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.15 E-value=35 Score=33.05 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=18.3
Q ss_pred ccccccccc-cccceEEecCCCcccChhhHHHh
Q 005057 659 DRDCIICLK-DEVSIVFLPCAHQVLCASCSDNY 690 (716)
Q Consensus 659 ~~~C~IC~~-~~~~vvllpCgH~vfC~~C~~~~ 690 (716)
+..|-||.. .+.+ -|||. |+.|....
T Consensus 65 datC~IC~KTKFAD----G~GH~--C~YCq~r~ 91 (169)
T KOG3799|consen 65 DATCGICHKTKFAD----GCGHN--CSYCQTRF 91 (169)
T ss_pred Ccchhhhhhccccc----ccCcc--cchhhhhH
Confidence 568999985 3444 49998 77776543
No 436
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=56.95 E-value=3.1e+02 Score=30.37 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 005057 372 DEIVVTMLHQIKDLERQVKERK-----EWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEME 446 (716)
Q Consensus 372 ~e~~~~l~~~~~~l~~~~~~~~-----~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE 446 (716)
-++.-.|++|-.-|=|+|.++. -.|...|.-+..|+.+-...|.--|......+ + ++=.+-.+..++.+|
T Consensus 155 q~Iaqailkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfd-p----~~qaevq~~Lvs~Le 229 (372)
T COG3524 155 QKIAQAILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFD-P----KAQAEVQMSLVSKLE 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccC-h----hhhhHHHHHHHHHHH
Confidence 4588899999999999988764 24566666666666666666555554322211 0 011233556677777
Q ss_pred HHHHHhhhHHHHH
Q 005057 447 NALRKASGQVDRA 459 (716)
Q Consensus 447 ~el~k~~~qle~a 459 (716)
.+|-....|++..
T Consensus 230 ~eL~~iqaqL~tv 242 (372)
T COG3524 230 DELIVIQAQLDTV 242 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666433
No 437
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=56.77 E-value=3.6 Score=45.80 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=35.6
Q ss_pred ccccccccc----cccceEEecCCCcccChhhHHHhccc-CCCCCCCCCccc
Q 005057 659 DRDCIICLK----DEVSIVFLPCAHQVLCASCSDNYGKK-GKATCPCCRVPI 705 (716)
Q Consensus 659 ~~~C~IC~~----~~~~vvllpCgH~vfC~~C~~~~~~~-r~~~CP~CR~~i 705 (716)
...|-.|-+ ++.+.-.+||.|. |=..|...+..+ +.+.||.||.-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHH
Confidence 357999976 3455567899999 999999987755 568999999433
No 438
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.72 E-value=1.1e+02 Score=32.13 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 005057 466 LETENAEIRAEMEASK 481 (716)
Q Consensus 466 Le~e~a~lr~e~Ea~k 481 (716)
++.+++.+.++.+-++
T Consensus 149 ~~~~~~~~~~~~~kL~ 164 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLE 164 (216)
T ss_pred hhhhHHHHHhhHHHHH
Confidence 4444444444444333
No 439
>PRK12472 hypothetical protein; Provisional
Probab=56.64 E-value=1.9e+02 Score=33.73 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 512 KAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+..++..+......+...++.|+.++
T Consensus 227 l~~~e~~~~~a~~~l~~adk~l~~a~ 252 (508)
T PRK12472 227 LRKLERAKARADAELKRADKALAAAK 252 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444455554443
No 440
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=56.57 E-value=3.3e+02 Score=32.41 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=12.4
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHH
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQ 388 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~ 388 (716)
-+|.+|=+.|++..|- +..++..
T Consensus 237 cyis~DY~eei~~~l~--~d~~d~~ 259 (645)
T KOG0681|consen 237 CYISPDYREEIIKILE--MDYYDEN 259 (645)
T ss_pred ceeCcchHHHHHHHhh--hhhhhcc
Confidence 3566666666665554 4444433
No 441
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=56.42 E-value=3.1e+02 Score=30.20 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 005057 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE-QKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe-e~~keea~~~~e~er~erE~aE 572 (716)
...+++|+.. =|..+.+.-+++..++-..+..+-.| .+-++|++..+...++..+++.
T Consensus 173 r~~lkee~d~---S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLk 231 (302)
T PF07139_consen 173 RVVLKEEMDS---SIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELK 231 (302)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554443 34444445555555555555554444 6677777777766666666555
No 442
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=55.59 E-value=2.5e+02 Score=28.90 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005057 517 EEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 517 eEl~~~k~KI~~le~el~qakq~ 539 (716)
+...++...+.+.++.+++++..
T Consensus 93 ~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 93 ELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 443
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=55.55 E-value=4 Score=44.56 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=33.1
Q ss_pred CccccccccccccceEEecC----C--CcccChhhHHHhcccCCCCCCCCCcc
Q 005057 658 CDRDCIICLKDEVSIVFLPC----A--HQVLCASCSDNYGKKGKATCPCCRVP 704 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpC----g--H~vfC~~C~~~~~~~r~~~CP~CR~~ 704 (716)
....|+||-..+.-.++..- | |. .|.-|...|...| ..||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R-~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVR-VKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccC-ccCCCCCCC
Confidence 45699999998865444332 2 33 7999999987764 489999975
No 444
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=55.43 E-value=3e+02 Score=29.71 Aligned_cols=69 Identities=30% Similarity=0.467 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH-----HHhhhcHHHHHHHHHhHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHh
Q 005057 382 IKDLERQVKERKEWAHQKA-MQAA-----RKLSNDLTELKMLRMEREETQRLKKGKQT---LEDTTMKRLSEMENALRKA 452 (716)
Q Consensus 382 ~~~l~~~~~~~~~wa~~k~-~qaa-----~~L~~~~~Elk~LR~ekee~e~lkkekqe---LEe~t~krLselE~el~k~ 452 (716)
...-+-+|+-|+-|-+... .+|+ +-|+.++.-|+. ..++++.+.++ -|..-+-|++.-|.+....
T Consensus 75 ~~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~------se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~ 148 (330)
T KOG2991|consen 75 KVMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKE------SEEKLKQQQQEAARRENILVMRLATKEQEMQEC 148 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999987655 4543 344455444432 11222222211 1333445666666666555
Q ss_pred hhHH
Q 005057 453 SGQV 456 (716)
Q Consensus 453 ~~ql 456 (716)
..|+
T Consensus 149 ~sqi 152 (330)
T KOG2991|consen 149 TSQI 152 (330)
T ss_pred HHHH
Confidence 5444
No 445
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=55.18 E-value=2.2e+02 Score=28.21 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 497 REKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 497 rekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
|..+-...+...|+.....++.+++.+.++.+.+.+-.
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555544555555555555555444433
No 446
>PLN03188 kinesin-12 family protein; Provisional
Probab=55.09 E-value=6.1e+02 Score=33.22 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 005057 381 QIKDLERQVKERKE 394 (716)
Q Consensus 381 ~~~~l~~~~~~~~~ 394 (716)
+++.+|.+|..++.
T Consensus 968 e~~~~~~e~~~~~~ 981 (1320)
T PLN03188 968 ELKRVQDELEHYRN 981 (1320)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555554443
No 447
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.02 E-value=2.7e+02 Score=29.03 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005057 492 LEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQ 549 (716)
Q Consensus 492 ~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kq 549 (716)
.++..--.....++.++|+-...|..-.+..+.-|..+.+-=..++.+...+.++.++
T Consensus 72 ~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~ 129 (207)
T PF05010_consen 72 QKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKK 129 (207)
T ss_pred HHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333334445555555555555555555555444444433344444444443333
No 448
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.62 E-value=3.9e+02 Score=30.83 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=61.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 005057 426 RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRL 505 (716)
Q Consensus 426 ~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l 505 (716)
.-++.+.+--+.-..++.+|+.-++.++ .|-+.-.++=.......+..++..++....++...+....-..++
T Consensus 206 ~~k~~L~~~sd~Ll~kVdDLQD~VE~LR--kDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK----- 278 (424)
T PF03915_consen 206 SGKKKLSEESDRLLTKVDDLQDLVEDLR--KDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKK----- 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-----
Confidence 3334444434445577777887777777 455666777777888888888888877777776655544333332
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 506 LAWEKQKAKLQ---EEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 506 ~~~Ekq~~~Lq---eEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
.||.++...- +.+..+..-+..|++.+..+......+
T Consensus 279 -iWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lv 318 (424)
T PF03915_consen 279 -IWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALV 318 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655542 223334444555555555555544443
No 449
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=54.11 E-value=1e+02 Score=31.98 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 588 IDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 588 ~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.+.+++++++..|.+-..+||...
T Consensus 228 ieEkk~~eei~fLk~tN~qLKaQL 251 (259)
T KOG4001|consen 228 IEEKKMKEEIEFLKETNRQLKAQL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777766666543
No 450
>PHA02862 5L protein; Provisional
Probab=54.00 E-value=13 Score=36.30 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.9
Q ss_pred cccccccccccceEEecCCCccc----ChhhHHHhccc-CCCCCCCCCccccceEEee
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVL----CASCSDNYGKK-GKATCPCCRVPIEQRIRVF 712 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vf----C~~C~~~~~~~-r~~~CP~CR~~i~~~i~i~ 712 (716)
..|-||++...+. +.||....- =..|..+|... +...||.|+.++. +.+.|
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~-Ik~~y 58 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN-IKKTY 58 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE-EEEcc
Confidence 4799999875443 467765321 25799998865 4568999999875 34444
No 451
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=53.97 E-value=2.3e+02 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 500 KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 500 k~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~e 532 (716)
+....+...++.....++.+.+.+.++....++
T Consensus 54 ~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~e 86 (174)
T PRK07352 54 AILQALKEAEERLRQAAQALAEAQQKLAQAQQE 86 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 452
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.72 E-value=52 Score=30.64 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
.+|.+||..+..+..++..-...+.+|..+|+.|+.|-+.++..+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888889999999999998886665444
No 453
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=53.54 E-value=2.4e+02 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528 (716)
Q Consensus 498 ekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~ 528 (716)
.++....+...++.....++.+.+.+.++.+
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444434333333333333
No 454
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.50 E-value=54 Score=28.67 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.++.+...+...|=..|+.-.+.+.++.+.|++..+.-+.+.+++...|+++..+-
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l~ 60 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVIL 60 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888889999999999999999999999999999999999999987553
No 455
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.44 E-value=22 Score=35.70 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=1.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHhh
Q 005057 588 IDFQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 588 ~E~qr~k~~l~~LekELe~Lk~ 609 (716)
.+.||+||+++.|++|+ .++.
T Consensus 31 ~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 31 EEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HCH-------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHH
Confidence 46789999999999999 4443
No 456
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.16 E-value=1.5e+02 Score=29.20 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+..+..++..|++++...+..+..++.++..+...
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555556666666666666666666666655544
No 457
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=53.11 E-value=2.3e+02 Score=27.68 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQ 530 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le 530 (716)
+...++-.....+-+++.+.++...+
T Consensus 62 l~~Ae~~~~ea~~~~~e~e~~L~~A~ 87 (156)
T CHL00118 62 LTKASEILAKANELTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 458
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.42 E-value=3.6e+02 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
++..+-.+-..|+.+|.-.-.|-.+.+..+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~ 233 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLN 233 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555444444
No 459
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=52.42 E-value=50 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.+|.+...+..+|=.+|+.-.+.+.++.+.|++..+.-+.+.+++...|+++..|.
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l~ 62 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRLFT 62 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999999999999999999999999998888887663
No 460
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.32 E-value=3.4e+02 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKI 526 (716)
Q Consensus 498 ekk~~k~l~~~Ekq~~~LqeEl~~~k~KI 526 (716)
.+..+.+...+-+.-..-+++++.++.-+
T Consensus 132 a~~~~~R~~~L~~~g~vs~~~~~~a~~a~ 160 (352)
T COG1566 132 AQNELERRAELAQRGVVSREELDRARAAL 160 (352)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 33344444444443333355555555433
No 461
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=52.20 E-value=55 Score=28.86 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 460 NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 460 ~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
..+|.+...+..+|=..|+.-.+.+.++...|++..+.-+.+.+.+...|.++..|-.
T Consensus 9 ~~sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~ 66 (80)
T PRK00977 9 PLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLD 66 (80)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888889999999999999999999999999999999999999988887643
No 462
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=52.10 E-value=62 Score=28.28 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 462 ~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
.+.+...+..+|=.+||.-.+.+.++.+.|++..+.-+.+.+.+...|+++..|-.
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~ 60 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLK 60 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888889999999999999999999999999999999999888877654
No 463
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.87 E-value=4.7e+02 Score=30.91 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAA 404 (716)
Q Consensus 372 ~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa 404 (716)
+||-+....+---|...|+-.-- |-+++|-+.
T Consensus 181 eEmS~r~l~reakl~~~lqk~f~-alEk~mka~ 212 (531)
T PF15450_consen 181 EEMSLRFLKREAKLCSFLQKSFL-ALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45555555555555555544433 555555443
No 464
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.78 E-value=2.8e+02 Score=30.75 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 499 KKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 499 kk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
..-+.++..-+.++..++.+|...+-.+.+..++..++
T Consensus 4 ~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~l 41 (344)
T PF12777_consen 4 ENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEEL 41 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888887777777766666655443
No 465
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=51.61 E-value=2.6e+02 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~e 532 (716)
..+...++.....++.+++.+.++.+.+++
T Consensus 56 ~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~e 85 (173)
T PRK13453 56 RDIDDAEQAKLNAQKLEEENKQKLKETQEE 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443333344333444444443333
No 466
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.55 E-value=5.3e+02 Score=31.47 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQV-DRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 439 ~krLselE~el~k~~~ql-e~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
.+.+.++|.++...-..+ +.++....+|..+++.++++...+
T Consensus 38 d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l 80 (660)
T KOG4302|consen 38 DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDL 80 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777666554433 566666666666666666666654
No 467
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=51.52 E-value=62 Score=28.25 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 462 ~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
+|.+...+...|=.++|.-.+.+.++.+.|++..+.-+.+..++...|.++..+-.
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~~l~~ 62 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVT 62 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888889999999999999999999999999999999999988876543
No 468
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=51.47 E-value=2.6e+02 Score=27.79 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEK 525 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~K 525 (716)
++.......++..++..
T Consensus 52 ~~R~~~I~~~l~~Ae~~ 68 (167)
T PRK08475 52 KSRINKISKRLEEIQEK 68 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 469
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=51.38 E-value=64 Score=28.29 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lqe 517 (716)
..|.+...+...|=.++|.-.+.+.++...|++..+.-+.+.+.+...|.++..+-+
T Consensus 6 ~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~ 62 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIK 62 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888899999999999999999999999999999999988888876644
No 470
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.28 E-value=1.3e+02 Score=31.99 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAE 476 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e 476 (716)
+++.++..+..+++....-+.+||..+..+...
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444555555555555443
No 471
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=50.92 E-value=1e+02 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 005057 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKML 417 (716)
Q Consensus 369 d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~L 417 (716)
++||++|.. +.+++++ ..+.+-|+.+..+.+..|.+...++..+
T Consensus 151 ~ekd~~i~~---~~~~~e~--d~rnq~l~~~i~~l~~~l~~~~~~~~~~ 194 (264)
T PF07246_consen 151 EEKDQLIKE---KTQEREN--DRRNQILSHEISNLTNELSNLRNDIDKF 194 (264)
T ss_pred HHHHHHHHH---Hhhchhh--hhHHHHHHHHHHHhhhhHHHhhchhhhh
Confidence 666666665 5555655 6666666666666666666555553333
No 472
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.85 E-value=2.7e+02 Score=27.91 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWR 548 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~k 548 (716)
....++.+...|+.++.+.+.++..|++++..+.+....++...+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777666544444433
No 473
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=50.68 E-value=6.1e+02 Score=31.91 Aligned_cols=195 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 005057 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (716)
Q Consensus 411 ~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~ 490 (716)
..++.-|--.-....++..+|+. .++.+..+|.+...+-++...++........+....-.+.=.-...-++....
T Consensus 539 ~de~~~l~~dl~~~~r~rq~~~~----~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d 614 (984)
T COG4717 539 TDELPELAVDLLVQSRIRQHWQQ----LRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLD 614 (984)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK--------------------IKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~K--------------------I~~le~el~qakq~~~~~e~~~kqe 550 (716)
+-.+.+--++..+....++.|+++|.++......+ +..|....+..+...+--....++-
T Consensus 615 ~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~ 694 (984)
T COG4717 615 ILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIER 694 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 005057 551 QKAKE-LLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKA 609 (716)
Q Consensus 551 e~~ke-ea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~ 609 (716)
.+... ++.+..+.-++++..+-.......+...+.+..+.+.+++...+++.-..++..
T Consensus 695 t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~ 754 (984)
T COG4717 695 TKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEG 754 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 474
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=50.24 E-value=4.5e+02 Score=30.26 Aligned_cols=137 Identities=14% Similarity=0.172 Sum_probs=68.1
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 005057 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLS 443 (716)
Q Consensus 364 ~~v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLs 443 (716)
--+|++.-..|...+-+|.-.|+++|++ ||-.+-| -.+.++.-+ -++.+|...++.-+
T Consensus 186 g~ls~~~e~rl~~~~kkq~l~le~~l~e--Ey~rkm~-aL~~~c~lE-------------------~r~k~e~~~qre~a 243 (429)
T PF12297_consen 186 GHLSPQVEKRLSSVFKKQFLGLEKRLQE--EYDRKMV-ALTAECNLE-------------------TRKKMEAQHQREMA 243 (429)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHhhHH-------------------HHHHHHHHHHHHHH
Confidence 3456667778999999999999999995 3332222 222222211 11112333333344
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEA---SKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (716)
Q Consensus 444 elE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea---~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~ 520 (716)
+||.+...++.--++....+..|.+..-.++++--. .-...+..+++.+++....+..+..+..-+-+-+..+-|++
T Consensus 244 ~~~eaeel~k~~~e~~a~e~~~LL~~lH~leqe~L~~~L~l~qEE~~aKa~Rqla~~~R~eLh~if~~qi~~ai~~GeL~ 323 (429)
T PF12297_consen 244 EMEEAEELLKHASERSAAECSSLLRKLHGLEQEHLRRSLLLQQEEDFAKARRQLAVFRRVELHEIFFEQIKSAIFKGELK 323 (429)
T ss_pred HHHHHHHHHhCccHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444433333333444443333322222111 11233455566666666666666665555555555555554
Q ss_pred HH
Q 005057 521 NE 522 (716)
Q Consensus 521 ~~ 522 (716)
..
T Consensus 324 ~e 325 (429)
T PF12297_consen 324 PE 325 (429)
T ss_pred HH
Confidence 43
No 475
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=49.95 E-value=7.3e+02 Score=32.62 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 371 KDEIVVTMLHQIKDLERQVKERKE 394 (716)
Q Consensus 371 k~e~~~~l~~~~~~l~~~~~~~~~ 394 (716)
..+.+..|+.-+..++.-+++...
T Consensus 776 ~~~~~~~l~~~~~~~e~~~~d~~~ 799 (1294)
T KOG0962|consen 776 AEESAETLQTDVTVLERFLKDLKL 799 (1294)
T ss_pred hHHhHHHHhhhhHHHHHHHHHHHH
Confidence 344566666666666666666554
No 476
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=49.88 E-value=62 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIK 527 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~ 527 (716)
.++...|.|+..|+.-|..-++.|.
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~ 191 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQ 191 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555555544433333
No 477
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=49.57 E-value=6.6e+02 Score=31.96 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHH
Q 005057 413 ELKMLRMEREETQRLKKGKQTLEDT 437 (716)
Q Consensus 413 Elk~LR~ekee~e~lkkekqeLEe~ 437 (716)
.|.-|-.-.-+...+++-+..|.-+
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444455555566666555533
No 478
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=49.45 E-value=5.3e+02 Score=30.85 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.4
Q ss_pred hHhHHHhhhh
Q 005057 288 KRNVAMFAAG 297 (716)
Q Consensus 288 ~~~~~~~~~~ 297 (716)
..-+.+++.|
T Consensus 267 gnvI~aLa~g 276 (607)
T KOG0240|consen 267 GNVINALAEG 276 (607)
T ss_pred HHHHHHHhcC
Confidence 3334444444
No 479
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.35 E-value=7 Score=44.04 Aligned_cols=38 Identities=29% Similarity=0.740 Sum_probs=0.0
Q ss_pred cccccc----ccccceEEecCCCcccChhhHHHhcc-----cCCCCCC
Q 005057 661 DCIICL----KDEVSIVFLPCAHQVLCASCSDNYGK-----KGKATCP 699 (716)
Q Consensus 661 ~C~IC~----~~~~~vvllpCgH~vfC~~C~~~~~~-----~r~~~CP 699 (716)
.|.||+ ..........|+|. ||..|...+.. .....||
T Consensus 148 ~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~iev~~~~~~~~~C~ 194 (384)
T KOG1812|consen 148 ECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHIEVKLLSGTVIRCP 194 (384)
T ss_pred cCccCccccccHhhhHHHhcccch-hhhHHhHHHhhhhhccCCCccCC
No 480
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.27 E-value=1.1e+02 Score=25.49 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e 493 (716)
+|.+|.+.+..+..+++.-...+..+..+....+.|-..++..+.-...+|++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
No 481
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.07 E-value=3.1e+02 Score=28.03 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005057 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (716)
Q Consensus 407 L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e 486 (716)
+.+.....+...++.+-..-+.....+.+.....-+.+.-.++.+.+ ..++.+...-+.++.........
T Consensus 20 ~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r----------~~~E~E~~~~~~el~~~E~rl~~ 89 (201)
T PF12072_consen 20 VRKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLR----------QELERELKERRKELQRLEKRLQQ 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH
Q 005057 487 SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE--QKAKELLLAQVEEE 564 (716)
Q Consensus 487 ~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe--e~~keea~~~~e~e 564 (716)
.+..+. .....+..-+..+...+.+|...+..+.....++..+.+.+...-...-.. ++++..++..+ +
T Consensus 90 rE~~L~-------~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~l--e 160 (201)
T PF12072_consen 90 REEQLD-------RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKL--E 160 (201)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 005057 565 RRSKEGAEAGNKRKLEALRLKIEIDFQRH 593 (716)
Q Consensus 565 r~erE~aE~~~k~k~e~~~~KaE~E~qr~ 593 (716)
..-+.++-...+.-++..+..++...+..
T Consensus 161 ~e~~~e~a~~ir~~eeeak~~A~~~Ar~I 189 (201)
T PF12072_consen 161 EEARREAAALIRRIEEEAKEEADKKARRI 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=49.02 E-value=4.8e+02 Score=31.69 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005057 392 RKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENA 471 (716)
Q Consensus 392 ~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a 471 (716)
| |-||++-+..+.|...+..+..+-.|. ..+.++.++.....-.|+..+|.++..+. .....|+..+.
T Consensus 342 ~--~~~q~~~~~~~~l~~~~~~~~~~~~e~---~~~~~~~~~~~~~~~~~l~~le~~l~~~~-------~~~~~L~~~~~ 409 (656)
T PRK06975 342 Y--ALNRKVDRLDQELVQRQQANDAQTAEL---RVKTEQAQASVHQLDSQFAQLDGKLADAQ-------SAQQALEQQYQ 409 (656)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005057 472 EIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQ 551 (716)
Q Consensus 472 ~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee 551 (716)
.+....+ ++--.....+..+-.|+..|...+..+-.-+...++.|+++..-
T Consensus 410 ~l~~~r~-----------------dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P------------ 460 (656)
T PRK06975 410 DLSRNRD-----------------DWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSP------------ 460 (656)
T ss_pred HHhcChh-----------------hhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCc------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005057 552 KAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRL 607 (716)
Q Consensus 552 ~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~L 607 (716)
..-.+..........++.--..|...+--.|..|...++.|
T Consensus 461 ---------------~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 461 ---------------QAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred ---------------chHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhC
No 483
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.99 E-value=2.1e+02 Score=25.95 Aligned_cols=82 Identities=24% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRL--ETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~L--e~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.+.+.+.+.++..+-..+++.-=..... +++.+.|+.-+| ..||+++..|+
T Consensus 3 ~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe---------------------------~rwek~v~~L~ 55 (87)
T PF12709_consen 3 KKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYE---------------------------ARWEKKVDELE 55 (87)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005057 517 EEIANEKEKIKELQQCLARIQQDQKETESKW 547 (716)
Q Consensus 517 eEl~~~k~KI~~le~el~qakq~~~~~e~~~ 547 (716)
.++....+.+.+|..++.-.+....++..-|
T Consensus 56 ~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 56 NENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.91 E-value=2.9e+02 Score=27.67 Aligned_cols=95 Identities=8% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEA 573 (716)
Q Consensus 494 ~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~ 573 (716)
+.+|...-...+...++.+...++.+.+.+.++...+++-.++... -..++..+.....+..+.+.++...
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~---------A~~~ae~~~~~il~~A~~ea~~~~~ 123 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN---------GYSEIEREKENLINQAKEDLERLEN 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHH
Q 005057 574 GNKRKLEALRLKIEIDFQRHKDDL 597 (716)
Q Consensus 574 ~~k~k~e~~~~KaE~E~qr~k~~l 597 (716)
..+...+..+.++..+++..-.++
T Consensus 124 ~a~~~ie~Ek~~a~~~l~~ei~~l 147 (184)
T CHL00019 124 YKNETIRFEQQRAINQVRQQVFQL 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.77 E-value=2.2e+02 Score=31.76 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 005057 465 RLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE--------KEKIKELQQCLARI 536 (716)
Q Consensus 465 ~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~--------k~KI~~le~el~qa 536 (716)
+.++|-.+|..+.+.++-....-...+++..+....+.+.+..-.++...+.+.+..+ ...+.++++++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHH
Q 005057 537 QQDQKETES 545 (716)
Q Consensus 537 kq~~~~~e~ 545 (716)
+....++++
T Consensus 81 ~~~l~DmEa 89 (330)
T PF07851_consen 81 RCQLFDMEA 89 (330)
T ss_pred HhhHHHHHh
No 486
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.46 E-value=5.9e+02 Score=31.07 Aligned_cols=224 Identities=23% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhcHHHHHHHHHhHH----------HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 005057 381 QIKDLERQVKERK--EWAHQKAMQAARKLSNDLTELKMLRMERE----------ETQRLKKGKQTLEDTTMKRLSEMENA 448 (716)
Q Consensus 381 ~~~~l~~~~~~~~--~wa~~k~~qaa~~L~~~~~Elk~LR~eke----------e~e~lkkekqeLEe~t~krLselE~e 448 (716)
|-.+|..||-.++ --+|||-+++-.-=.+--.|-..+|+++| +.+++...-+..-|-..|-.++=|..
T Consensus 481 qe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~a~EkK 560 (948)
T KOG0577|consen 481 QESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAASAEEKK 560 (948)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 005057 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV----TTCLEVAKREKKCLKRLLA------WEKQKAKLQEE 518 (716)
Q Consensus 449 l~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~----~~~~e~~erekk~~k~l~~------~Ekq~~~LqeE 518 (716)
..+...-..+-+.+.. ++....+.+.-.|.+|.++.+.. +...+...+.|..+.+.++ +++|.+-+.-+
T Consensus 561 fqq~i~~qqkk~l~~~-~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaeeEa~ll~~qrqy~ele 639 (948)
T KOG0577|consen 561 FQQHILGQQKKELKAY-LEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEEEAGLLRRQRQYLELE 639 (948)
T ss_pred HHHHHHHhhHHHHHHH-HHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHhhhhHHH
Q 005057 519 IANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERR-SKEGAEAGNKRKLEALRLKIEIDFQRHKDDL 597 (716)
Q Consensus 519 l~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~-erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l 597 (716)
.-..++|+--...++.+---+ +.+-.+-.|-...-.-++++-+.-+. +..++.+..+-+.+.++++.++|+.--.+.-
T Consensus 640 ~r~ykRk~l~~rH~leqql~r-edlnkketQ~d~ehalLlrqhE~treLE~rql~~vq~~r~e~ir~QHqtEl~nQ~eYn 718 (948)
T KOG0577|consen 640 CRRYKRKMLLARHELEQQLLR-EDLNKKETQKDLEHALLLRQHEATRELEYRQLNAVQRMRAELIRLQHQTELGNQLEYN 718 (948)
T ss_pred HHHHHHHHHHHhhhhHHHHHH-HHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHH
Q 005057 598 QRLEQEFSR 606 (716)
Q Consensus 598 ~~LekELe~ 606 (716)
++-++||.+
T Consensus 719 kRre~ELrr 727 (948)
T KOG0577|consen 719 KRREQELRR 727 (948)
T ss_pred HHHHHHHHH
No 487
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=48.45 E-value=1.6e+02 Score=32.71 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 436 DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKL 515 (716)
Q Consensus 436 e~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~L 515 (716)
+....+++++|....++.--...-+|..--|+=+...|+-.++...-.+.++-+-|+ .+
T Consensus 115 e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~e---------------------ek 173 (405)
T KOG2010|consen 115 ELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENE---------------------EK 173 (405)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005057 516 QEEIANEKEKIKELQQCLARIQQDQKETESKWRQ 549 (716)
Q Consensus 516 qeEl~~~k~KI~~le~el~qakq~~~~~e~~~kq 549 (716)
..|++.+|.-+.-|+.+.+++++.++|...-+++
T Consensus 174 ~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 174 SKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.45 E-value=5.6e+02 Score=30.86 Aligned_cols=224 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhH---HHH
Q 005057 370 QKDEIVVTMLHQIKDLERQVKERKEWA--------HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLE---DTT 438 (716)
Q Consensus 370 ~k~e~~~~l~~~~~~l~~~~~~~~~wa--------~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLE---e~t 438 (716)
.++++-..+-.--.+++..-+...+++ ...+|..+..........+.-..-.+......+.+-... ...
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~ 342 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALP 342 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q ss_pred HHHHHHHHHHHHHhhh------------------HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHhHHHHHHHH--HHH
Q 005057 439 MKRLSEMENALRKASG------------------QVDRANAAVR-RLETENAEIRAEMEASKLSAAESVTTCLEV--AKR 497 (716)
Q Consensus 439 ~krLselE~el~k~~~------------------qle~a~~~~~-~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~--~er 497 (716)
-..+..++..+..... ++...-..+. ........+..+++.+..+..+..+.+..+ .+.
T Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~ 422 (650)
T TIGR03185 343 AEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQ 422 (650)
T ss_pred HHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKR 577 (716)
Q Consensus 498 ekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~ 577 (716)
-++..+++..+++++..++.++...++++..+.+++.+++.. ..+..............+....+-++.++.....
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT----LDEKTKQKINAFELERAITIADKAKKTLKEFREK 498 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 005057 578 KLEALRLKIEIDFQRHKDDL 597 (716)
Q Consensus 578 k~e~~~~KaE~E~qr~k~~l 597 (716)
.....+...+..+...-..+
T Consensus 499 l~~~~~~~le~~~~~~f~~l 518 (650)
T TIGR03185 499 LLERKLQQLEEEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 489
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.30 E-value=2.3e+02 Score=26.35 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
++|-.+|+.||++...+|.-..+-+.... .|.++|..-.+.|..+++++.-+.=++.++
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~---------------------~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL 59 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNA---------------------ELKEQLKEKEQALRKLEQENDSLTFRNQQL 59 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 005057 544 ESKWRQEQKAKE 555 (716)
Q Consensus 544 e~~~kqee~~ke 555 (716)
..+....+...+
T Consensus 60 ~kRV~~LQ~El~ 71 (102)
T PF10205_consen 60 TKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHH
No 490
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=48.26 E-value=66 Score=33.98 Aligned_cols=89 Identities=16% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
.++..+=++|..+- .+...+...+..-.++..+..+++ ...+.+..+.++.++.+ .+.++...|.++.+.+.||
T Consensus 105 ~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~----~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eI 178 (262)
T PF14257_consen 105 DKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLK----NLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEI 178 (262)
T ss_pred HHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQCLA 534 (716)
Q Consensus 520 ~~~k~KI~~le~el~ 534 (716)
+..+.++..|+.+..
T Consensus 179 e~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 179 EQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHhhc
No 491
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.19 E-value=4.9e+02 Score=30.07 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 435 EDTTMKRLSEMENALRKASGQVDRANAAVRRLET-----ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (716)
Q Consensus 435 Ee~t~krLselE~el~k~~~qle~a~~~~~~Le~-----e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~E 509 (716)
++...--+..|+.++.-+....+.-...+..|+. .+..+..+.+.++.+-.+....+++..+.+..+--.+...+
T Consensus 138 ~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 138 EECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLA 559 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~ 559 (716)
....++.++-...-++-...+.++-+..-..+.+++..+=-+...+.+.+
T Consensus 218 ~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 218 FKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
No 492
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=48.01 E-value=5.3e+02 Score=30.46 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHhhhcHHHHHHHHHh----HHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005057 405 RKLSNDLTELKMLRME----REETQRLKKGKQTLEDTTMKRL-------SEMENALRKASGQVDRANAAVRRLETENAEI 473 (716)
Q Consensus 405 ~~L~~~~~Elk~LR~e----kee~e~lkkekqeLEe~t~krL-------selE~el~k~~~qle~a~~~~~~Le~e~a~l 473 (716)
.+|-.-..|...||.+ +.|+-..-...+.+-.-..|++ .-+-++|...+.++.+.-...-+|+.++..+
T Consensus 166 ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 166 EKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 474 RAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 474 r~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
..+...+..+..++...+...++..+..-..+..+|.+-+..-+.+.++...|..+
T Consensus 246 qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 246 QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.76 E-value=3.9e+02 Score=31.96 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH--HHH
Q 005057 413 ELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAES--VTT 490 (716)
Q Consensus 413 Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~--~~~ 490 (716)
|+.-|=.|+.+.-.-|..+...-..--.++.+|--+-.=++++++.+.....+|+.++.+++.|+..+|.++... ...
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~ 381 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAK 381 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+.+--+.--...++|...|-+ +.--|-+..|.++-+|++.+.-+.
T Consensus 382 ~~e~ddiPmAqRkRFTRvEMa--RVLMeRNqYKErLMELqEavrWTE 426 (832)
T KOG2077|consen 382 DDEDDDIPMAQRKRFTRVEMA--RVLMERNQYKERLMELQEAVRWTE 426 (832)
T ss_pred ccccccccHHHHhhhHHHHHH--HHHHHHhHHHHHHHHHHHHHhHHH
No 494
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.60 E-value=6.4e+02 Score=31.25 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q 005057 422 EETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQV---------DRANAAVRRLETENAEIRAEMEASKLSAAESVT 489 (716)
Q Consensus 422 ee~e~lkkekqeLEe~---t~krLselE~el~k~~~ql---------e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~ 489 (716)
.+.+.|....|.++.. .+.+|..-..++.|+..|. +-+..-+..+.+.++++++++| ++.......
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE--~L~~t~~~~ 693 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLE--RLTHTQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHH--HhcCChhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 490 TCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKE 569 (716)
Q Consensus 490 ~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE 569 (716)
.+.+...-++....+ .|......+-..-..+..++..+.+..+++..-|+++....-.++-.+.--+...+
T Consensus 694 ~~~~~~l~aaQT~~~---------vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~ 764 (1104)
T COG4913 694 AIAKAALDAAQTRQK---------VLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPE 764 (1104)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005057 570 GAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEF 604 (716)
Q Consensus 570 ~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekEL 604 (716)
+.-......--+.++.-..-.....++|++|+.+|
T Consensus 765 ~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~I 799 (1104)
T COG4913 765 QHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEI 799 (1104)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
No 495
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=47.53 E-value=2.5e+02 Score=33.40 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 005057 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQ 591 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~q 591 (716)
+....++-..++..+...++.-++-++++.+--.+.+++....+...++++.+..++.+++.+.-++..+.-...-.|.+
T Consensus 594 ksqdRks~srekr~~~sfdk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErE 673 (940)
T KOG4661|consen 594 KSQDRKSRSREKRRERSFDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERE 673 (940)
T ss_pred hhhhhHHHHHHhhhhhhHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHH
Q 005057 592 RHKDDLQRLEQE 603 (716)
Q Consensus 592 r~k~~l~~LekE 603 (716)
++.-.--+.+.+
T Consensus 674 RLEreRM~ve~e 685 (940)
T KOG4661|consen 674 RLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHHHHh
No 496
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=47.52 E-value=5.1 Score=47.89 Aligned_cols=48 Identities=33% Similarity=0.696 Sum_probs=0.0
Q ss_pred cccccccccccceEEecCCCcccChhhHHH--hcccCCCCCCCCCccccce
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDN--YGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~--~~~~r~~~CP~CR~~i~~~ 708 (716)
.+|.||.......+.+.|.|. ||..|.-. .+......||+|+..+...
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred ccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhhh
No 497
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=47.52 E-value=4e+02 Score=28.88 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhH
Q 005057 375 VVTMLHQIKDLERQVKER-------------------KEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLE 435 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~-------------------~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLE 435 (716)
..-|+.|++-|+.++.-| ++|-+.=+.+.=--|+.-.+..+.|+...+..+....+.+.+-
T Consensus 54 l~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~ 133 (268)
T PF11802_consen 54 LSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLL 133 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005057 436 DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (716)
Q Consensus 436 e~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e 486 (716)
++--.|..+++++....+ ....++++.++...++...+.+-..+-+
T Consensus 134 ~sL~~r~~elk~~~~~~s-----e~rv~~el~~K~~~~k~~~e~Ll~~Lge 179 (268)
T PF11802_consen 134 ESLNKRHEELKNQVETFS-----ESRVFQELKTKIEKIKEYKEKLLSFLGE 179 (268)
T ss_pred HHHHHHHHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=47.38 E-value=7.7e+02 Score=32.09 Aligned_cols=225 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHH------------HH
Q 005057 383 KDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENA------------LR 450 (716)
Q Consensus 383 ~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~e------------l~ 450 (716)
.+++++|+.=++=-+-.-..+..-|..-+.=|...+..+++.+.+++.........+.--.+++.. +.
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~ 105 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTD 105 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 005057 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW--------EKQKAKLQEEIANE 522 (716)
Q Consensus 451 k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~--------Ekq~~~LqeEl~~~ 522 (716)
.+..++....+...++.+..+........+.......-...-++..+-...-.++.+- +-+...|+.|....
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l 185 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAAL 185 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005057 523 KEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQ 602 (716)
Q Consensus 523 k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~Lek 602 (716)
+.++..++.++....+.++-...+...........-.+++..+..+.+.....-+..-+...+...+....-..+.++-+
T Consensus 186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~ 265 (1109)
T PRK10929 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFK 265 (1109)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHH
Q ss_pred HHHHH
Q 005057 603 EFSRL 607 (716)
Q Consensus 603 ELe~L 607 (716)
...++
T Consensus 266 ~N~~L 270 (1109)
T PRK10929 266 INREL 270 (1109)
T ss_pred HHHHH
No 499
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.00 E-value=5.2e+02 Score=30.08 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 005057 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA-RIQQDQ 540 (716)
Q Consensus 462 ~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~-qakq~~ 540 (716)
.+++|++..+.-++.--..+.+.-|... ++....+.....++...+-.+-...++.-.+-+.+++ +..+..
T Consensus 96 ~vfel~r~qE~Trq~E~~~k~~~~eA~q--------a~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e 167 (630)
T KOG0742|consen 96 DVFELARMQEQTRQAEQQAKTKEYEAAQ--------AQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARKRYEDE 167 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhH
Q 005057 541 KETESKWRQE-QKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKD 595 (716)
Q Consensus 541 ~~~e~~~kqe-e~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~ 595 (716)
.+......+| -...|+-..+.|..+..-++-+...+++.+..+..+|.|--+.+.
T Consensus 168 ~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA 223 (630)
T KOG0742|consen 168 LEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKA 223 (630)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 500
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.97 E-value=2.7e+02 Score=27.13 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE 524 (716)
Q Consensus 448 el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~ 524 (716)
++..++..++.++.........+..+..++..+...+.+.+..=..+-..-......+..-|+++.+|..|-+..+.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Done!