Query 005057
Match_columns 716
No_of_seqs 331 out of 1391
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.2 3.7E-12 1.3E-16 106.3 4.8 54 658-716 14-67 (68)
2 2vje_B MDM4 protein; proto-onc 99.2 7.6E-12 2.6E-16 102.7 4.0 55 659-714 7-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.2 9.7E-12 3.3E-16 102.4 4.1 55 659-714 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.1 2.5E-11 8.4E-16 104.1 4.8 52 659-715 18-69 (79)
5 4ic3_A E3 ubiquitin-protein li 99.0 8.3E-11 2.8E-15 99.3 3.6 51 659-714 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.0 1.5E-10 5E-15 97.8 3.0 51 659-714 25-75 (75)
7 4ayc_A E3 ubiquitin-protein li 98.9 6.7E-09 2.3E-13 97.5 12.0 48 660-709 54-101 (138)
8 2ysl_A Tripartite motif-contai 98.7 1.2E-08 4E-13 84.8 4.8 50 657-707 18-69 (73)
9 1chc_A Equine herpes virus-1 r 98.7 9.8E-09 3.3E-13 84.2 4.1 54 659-714 5-59 (68)
10 2djb_A Polycomb group ring fin 98.7 8.5E-09 2.9E-13 85.9 3.8 55 658-714 14-69 (72)
11 3t6p_A Baculoviral IAP repeat- 98.7 6E-09 2.1E-13 112.4 3.1 51 659-714 295-345 (345)
12 2ecn_A Ring finger protein 141 98.7 5.2E-09 1.8E-13 86.5 1.8 54 658-714 14-67 (70)
13 2d8t_A Dactylidin, ring finger 98.7 1.2E-08 4.1E-13 84.8 3.8 48 658-707 14-61 (71)
14 2xeu_A Ring finger protein 4; 98.6 1.1E-08 3.6E-13 82.5 3.1 53 659-713 3-64 (64)
15 2csy_A Zinc finger protein 183 98.6 1.6E-08 5.5E-13 86.0 4.2 48 658-707 14-61 (81)
16 2ecy_A TNF receptor-associated 98.6 1.4E-08 4.7E-13 83.1 3.6 49 658-707 14-62 (66)
17 1t1h_A Gspef-atpub14, armadill 98.6 2.6E-08 8.8E-13 84.0 4.3 49 658-707 7-55 (78)
18 3ng2_A RNF4, snurf, ring finge 98.6 1.2E-08 4.1E-13 84.2 2.1 52 659-712 10-70 (71)
19 3fl2_A E3 ubiquitin-protein li 98.6 2.1E-08 7E-13 92.3 3.9 48 659-707 52-99 (124)
20 2ea6_A Ring finger protein 4; 98.6 1.7E-08 6E-13 82.4 2.6 48 658-707 14-68 (69)
21 2ecm_A Ring finger and CHY zin 98.6 2.9E-08 1E-12 77.8 3.6 47 659-707 5-55 (55)
22 2egp_A Tripartite motif-contai 98.6 2.1E-08 7.2E-13 84.4 2.6 50 657-707 10-65 (79)
23 2ecw_A Tripartite motif-contai 98.5 4.4E-08 1.5E-12 83.0 4.2 49 658-707 18-71 (85)
24 2ct2_A Tripartite motif protei 98.5 3.9E-08 1.3E-12 84.3 3.8 50 657-707 13-68 (88)
25 2kiz_A E3 ubiquitin-protein li 98.5 4.2E-08 1.4E-12 80.7 3.8 50 658-709 13-65 (69)
26 1iym_A EL5; ring-H2 finger, ub 98.5 5.6E-08 1.9E-12 76.3 4.3 46 659-706 5-54 (55)
27 2ep4_A Ring finger protein 24; 98.5 2.7E-08 9.1E-13 83.0 2.4 56 658-715 14-72 (74)
28 2yur_A Retinoblastoma-binding 98.5 3.2E-08 1.1E-12 83.0 2.7 49 658-707 14-64 (74)
29 3lrq_A E3 ubiquitin-protein li 98.5 3.9E-08 1.3E-12 87.4 3.2 48 659-707 22-70 (100)
30 3ztg_A E3 ubiquitin-protein li 98.5 4.6E-08 1.6E-12 85.0 3.6 49 657-706 11-61 (92)
31 1g25_A CDK-activating kinase a 98.5 4.3E-08 1.5E-12 79.9 3.1 48 659-707 3-55 (65)
32 2l0b_A E3 ubiquitin-protein li 98.5 4.6E-08 1.6E-12 85.5 3.4 49 657-707 38-89 (91)
33 2ecv_A Tripartite motif-contai 98.5 5.3E-08 1.8E-12 82.6 3.6 49 658-707 18-71 (85)
34 1e4u_A Transcriptional repress 98.5 6.1E-08 2.1E-12 82.9 3.7 55 658-713 10-68 (78)
35 1z6u_A NP95-like ring finger p 98.5 6.4E-08 2.2E-12 92.5 3.9 49 659-708 78-126 (150)
36 2ysj_A Tripartite motif-contai 98.5 7.9E-08 2.7E-12 77.7 3.7 44 657-701 18-63 (63)
37 2y1n_A E3 ubiquitin-protein li 98.5 7.8E-08 2.7E-12 104.9 4.8 54 659-713 332-385 (389)
38 3l11_A E3 ubiquitin-protein li 98.5 4.8E-08 1.6E-12 88.5 2.4 48 659-707 15-62 (115)
39 2ecj_A Tripartite motif-contai 98.4 1.4E-07 4.9E-12 74.5 3.9 43 658-701 14-58 (58)
40 2ckl_B Ubiquitin ligase protei 98.4 1.2E-07 4E-12 91.4 4.0 48 659-707 54-102 (165)
41 1x4j_A Ring finger protein 38; 98.4 9.1E-08 3.1E-12 80.2 2.7 48 658-707 22-72 (75)
42 1bor_A Transcription factor PM 98.4 5.4E-08 1.8E-12 77.6 1.3 45 658-707 5-49 (56)
43 2ect_A Ring finger protein 126 98.4 1.4E-07 4.7E-12 79.5 3.7 49 658-708 14-65 (78)
44 2ckl_A Polycomb group ring fin 98.4 1.5E-07 5E-12 84.5 4.0 47 659-707 15-62 (108)
45 1jm7_A BRCA1, breast cancer ty 98.4 1.3E-07 4.4E-12 84.8 3.5 48 659-707 21-70 (112)
46 2y43_A E3 ubiquitin-protein li 98.4 1.6E-07 5.5E-12 82.8 3.8 47 659-707 22-69 (99)
47 2f42_A STIP1 homology and U-bo 98.3 8.1E-07 2.8E-11 87.4 8.4 51 656-707 103-153 (179)
48 3hct_A TNF receptor-associated 98.3 1.8E-07 6.3E-12 85.3 2.9 50 657-707 16-65 (118)
49 1v87_A Deltex protein 2; ring- 98.3 2.2E-07 7.5E-12 83.8 3.2 48 659-707 25-94 (114)
50 1rmd_A RAG1; V(D)J recombinati 98.3 2.7E-07 9.3E-12 83.7 3.4 48 659-707 23-70 (116)
51 2c2l_A CHIP, carboxy terminus 98.2 5E-07 1.7E-11 92.8 3.8 49 658-707 207-255 (281)
52 2kre_A Ubiquitin conjugation f 98.2 8.6E-07 2.9E-11 79.2 4.3 49 657-707 27-75 (100)
53 2kr4_A Ubiquitin conjugation f 98.2 8.2E-07 2.8E-11 76.8 3.7 49 657-707 12-60 (85)
54 1jm7_B BARD1, BRCA1-associated 98.2 4.7E-07 1.6E-11 82.5 2.3 44 659-706 22-66 (117)
55 1wgm_A Ubiquitin conjugation f 98.2 1E-06 3.5E-11 78.4 4.4 49 657-707 20-69 (98)
56 2ecl_A Ring-box protein 2; RNF 98.2 9.8E-07 3.3E-11 75.5 3.9 47 659-707 15-76 (81)
57 3knv_A TNF receptor-associated 98.2 3.4E-07 1.2E-11 86.6 1.0 48 657-705 29-76 (141)
58 4ap4_A E3 ubiquitin ligase RNF 98.1 7.6E-07 2.6E-11 81.4 3.0 47 659-707 7-60 (133)
59 4ap4_A E3 ubiquitin ligase RNF 98.0 1.8E-06 6.3E-11 78.8 3.2 53 658-712 71-132 (133)
60 3hcs_A TNF receptor-associated 98.0 2.5E-06 8.4E-11 82.4 2.9 50 657-707 16-65 (170)
61 3dpl_R Ring-box protein 1; ubi 97.9 4.6E-06 1.6E-10 75.3 4.0 46 659-706 37-100 (106)
62 2yu4_A E3 SUMO-protein ligase 97.8 8.9E-06 3.1E-10 71.5 3.5 46 658-704 6-59 (94)
63 2v71_A Nuclear distribution pr 97.8 0.0076 2.6E-07 59.5 23.7 133 457-611 52-184 (189)
64 3na7_A HP0958; flagellar bioge 97.7 0.0083 2.8E-07 61.8 24.6 42 440-481 32-73 (256)
65 4a0k_B E3 ubiquitin-protein li 97.7 6.2E-06 2.1E-10 75.8 0.2 46 659-706 48-111 (117)
66 1i84_S Smooth muscle myosin he 97.6 0.00012 4.1E-09 90.5 10.0 9 47-55 301-309 (1184)
67 2d8s_A Cellular modulator of i 97.6 2.7E-05 9.2E-10 66.8 3.0 54 659-713 15-76 (80)
68 1i84_S Smooth muscle myosin he 97.6 0.00015 5E-09 89.7 10.5 13 380-392 819-831 (1184)
69 3htk_C E3 SUMO-protein ligase 97.6 3E-05 1E-09 80.3 3.3 50 657-707 179-232 (267)
70 3vk6_A E3 ubiquitin-protein li 97.5 8.9E-05 3.1E-09 65.9 4.7 51 661-712 3-54 (101)
71 1wim_A KIAA0161 protein; ring 97.4 5.1E-05 1.8E-09 66.2 1.7 45 659-704 5-61 (94)
72 2dfs_A Myosin-5A; myosin-V, in 97.0 0.033 1.1E-06 68.3 21.6 21 524-544 1023-1043(1080)
73 2dfs_A Myosin-5A; myosin-V, in 97.0 0.02 6.8E-07 70.2 19.4 10 46-55 273-282 (1080)
74 3na7_A HP0958; flagellar bioge 96.9 0.15 5E-06 52.5 22.7 9 660-668 199-207 (256)
75 2bay_A PRE-mRNA splicing facto 96.8 0.0004 1.4E-08 56.4 2.1 52 659-712 3-57 (61)
76 2ocy_A RAB guanine nucleotide 96.6 0.32 1.1E-05 46.5 20.7 94 441-540 52-145 (154)
77 3o0z_A RHO-associated protein 96.4 0.62 2.1E-05 45.1 21.6 62 416-481 21-82 (168)
78 3vkg_A Dynein heavy chain, cyt 96.2 1.1 3.7E-05 60.6 28.9 46 423-469 1918-1963(3245)
79 3vkg_A Dynein heavy chain, cyt 96.1 1.2 3.9E-05 60.3 28.4 49 524-572 2014-2062(3245)
80 3o0z_A RHO-associated protein 95.9 1.3 4.4E-05 42.9 21.5 43 486-528 45-87 (168)
81 2efr_A General control protein 95.8 1.4 4.8E-05 42.1 24.3 88 445-546 26-113 (155)
82 3oja_B Anopheles plasmodium-re 95.6 0.079 2.7E-06 59.9 13.0 37 502-538 536-572 (597)
83 2efr_A General control protein 95.5 1.8 6.2E-05 41.4 21.9 134 381-546 1-141 (155)
84 2b9c_A Striated-muscle alpha t 95.5 0.43 1.5E-05 45.3 15.5 114 406-540 18-131 (147)
85 1vyx_A ORF K3, K3RING; zinc-bi 95.2 0.011 3.8E-07 47.7 3.1 50 658-707 5-59 (60)
86 2fxo_A Myosin heavy chain, car 95.1 2.1 7.2E-05 39.5 18.6 83 440-522 13-95 (129)
87 2ct0_A Non-SMC element 1 homol 95.0 0.027 9.1E-07 47.5 4.9 54 659-713 15-70 (74)
88 4gkw_A Spindle assembly abnorm 94.4 3.2 0.00011 38.4 17.5 117 369-492 7-143 (167)
89 3oja_B Anopheles plasmodium-re 94.4 0.68 2.3E-05 52.2 16.2 30 504-533 517-546 (597)
90 3u1c_A Tropomyosin alpha-1 cha 93.9 3 0.0001 36.9 16.0 46 495-540 22-67 (101)
91 2v71_A Nuclear distribution pr 93.7 5.8 0.0002 39.1 23.5 21 591-611 157-177 (189)
92 3u59_A Tropomyosin beta chain; 93.6 3.2 0.00011 36.6 15.7 48 493-540 20-67 (101)
93 3oja_A Leucine-rich immune mol 93.5 3.8 0.00013 45.1 19.8 73 385-457 326-398 (487)
94 3k1l_B Fancl; UBC, ring, RWD, 93.3 0.015 5.1E-07 62.4 -0.0 49 658-707 307-373 (381)
95 3i00_A HIP-I, huntingtin-inter 93.3 0.65 2.2E-05 42.7 10.8 85 366-492 8-92 (120)
96 1f5n_A Interferon-induced guan 92.7 17 0.00058 41.7 24.2 22 590-611 562-583 (592)
97 2i1j_A Moesin; FERM, coiled-co 92.7 0.17 5.7E-06 58.0 7.6 22 83-104 98-119 (575)
98 2e7s_A RAB guanine nucleotide 92.3 0.63 2.1E-05 43.5 9.3 92 442-539 41-132 (135)
99 2ocy_A RAB guanine nucleotide 90.9 11 0.00039 35.8 20.5 134 439-611 12-145 (154)
100 3tnu_B Keratin, type II cytosk 90.1 8.4 0.00029 35.3 14.7 94 429-539 4-97 (129)
101 2i1j_A Moesin; FERM, coiled-co 89.3 0.25 8.7E-06 56.5 4.6 86 440-532 342-427 (575)
102 3tnu_A Keratin, type I cytoske 88.8 8 0.00027 35.6 13.6 94 429-539 6-99 (131)
103 1ic2_A Tropomyosin alpha chain 87.9 3.9 0.00013 34.6 10.0 38 503-540 27-64 (81)
104 2eqb_B RAB guanine nucleotide 87.4 15 0.0005 32.5 14.4 39 442-480 21-59 (97)
105 2eqb_B RAB guanine nucleotide 86.6 15 0.00051 32.4 13.0 23 507-529 23-45 (97)
106 3a7p_A Autophagy protein 16; c 85.4 11 0.00039 35.7 12.5 37 514-550 100-136 (152)
107 1otr_A Protein CUE2; protein-p 85.1 0.73 2.5E-05 35.8 3.5 37 170-206 6-42 (49)
108 3bas_A Myosin heavy chain, str 85.1 12 0.00041 32.2 11.8 44 440-483 14-57 (89)
109 2v66_B Nuclear distribution pr 84.4 23 0.00079 31.9 15.1 97 375-478 5-101 (111)
110 2fxo_A Myosin heavy chain, car 84.0 25 0.00087 32.1 18.4 43 505-547 43-85 (129)
111 3ghg_A Fibrinogen alpha chain; 83.7 7.3 0.00025 43.7 12.0 102 369-485 53-155 (562)
112 3iox_A AGI/II, PA; alpha helix 82.6 25 0.00085 39.3 15.7 51 435-485 4-58 (497)
113 2ko5_A Ring finger protein Z; 82.1 0.54 1.8E-05 41.3 1.9 50 659-711 28-77 (99)
114 2cs3_A Protein C14ORF4, MY039 82.0 0.48 1.6E-05 40.4 1.5 34 659-693 15-52 (93)
115 2v66_B Nuclear distribution pr 81.8 29 0.001 31.3 17.1 74 462-545 4-77 (111)
116 1f5n_A Interferon-induced guan 81.7 21 0.00073 40.9 15.4 32 369-400 375-406 (592)
117 1deq_A Fibrinogen (alpha chain 81.5 45 0.0015 36.0 16.7 47 464-510 63-109 (390)
118 1deq_A Fibrinogen (alpha chain 81.4 20 0.00068 38.7 13.9 44 513-556 63-106 (390)
119 2jun_A Midline-1; B-BOX, TRIM, 81.2 0.58 2E-05 40.6 1.8 32 659-691 3-38 (101)
120 1m1j_B Fibrinogen beta chain; 81.0 48 0.0016 36.9 17.4 26 509-534 167-192 (464)
121 2v4h_A NF-kappa-B essential mo 80.4 19 0.00064 32.4 11.2 32 503-534 31-62 (110)
122 4h22_A Leucine-rich repeat fli 80.2 13 0.00043 33.2 9.9 79 440-525 2-80 (103)
123 3ghg_A Fibrinogen alpha chain; 79.8 18 0.00063 40.5 13.3 14 597-610 178-191 (562)
124 1ic2_A Tropomyosin alpha chain 79.5 27 0.00092 29.4 11.7 30 507-536 45-74 (81)
125 2e7s_A RAB guanine nucleotide 78.2 13 0.00045 34.6 10.0 33 506-538 42-74 (135)
126 3mq9_A Bone marrow stromal ant 78.1 42 0.0014 36.5 16.0 23 504-526 444-466 (471)
127 3hnw_A Uncharacterized protein 77.3 18 0.00061 33.8 10.8 16 514-529 114-129 (138)
128 3mq9_A Bone marrow stromal ant 76.2 69 0.0024 34.7 17.1 9 60-68 16-24 (471)
129 3mq7_A Bone marrow stromal ant 75.3 48 0.0016 30.1 12.6 38 439-476 70-107 (121)
130 2k48_A Nucleoprotein; viral pr 75.1 29 0.00099 30.9 10.7 26 514-539 79-104 (107)
131 1m1j_B Fibrinogen beta chain; 75.0 84 0.0029 35.0 17.1 58 515-572 98-155 (464)
132 3nw0_A Non-structural maintena 74.9 2.4 8.1E-05 43.2 4.4 49 659-708 180-230 (238)
133 2zet_C Melanophilin; complex, 73.7 2.1 7.1E-05 40.8 3.4 44 659-703 68-116 (153)
134 3q8t_A Beclin-1; autophagy, AT 73.2 47 0.0016 29.0 14.8 69 461-536 25-93 (96)
135 3tnu_A Keratin, type I cytoske 71.3 56 0.0019 29.9 12.5 12 390-401 9-20 (131)
136 3trt_A Vimentin; cytoskeleton, 71.0 39 0.0013 27.9 10.3 65 414-480 11-75 (77)
137 1joc_A EEA1, early endosomal a 70.8 13 0.00045 33.9 8.0 31 659-690 69-103 (125)
138 3k29_A Putative uncharacterize 69.9 81 0.0028 30.3 22.6 50 419-478 16-65 (169)
139 3q8t_A Beclin-1; autophagy, AT 69.7 56 0.0019 28.5 14.7 42 491-532 13-54 (96)
140 1weo_A Cellulose synthase, cat 68.7 4.8 0.00017 35.0 4.2 48 660-707 17-70 (93)
141 3i00_A HIP-I, huntingtin-inter 68.4 49 0.0017 30.1 11.2 26 460-485 14-39 (120)
142 2lw1_A ABC transporter ATP-bin 67.3 36 0.0012 29.1 9.6 48 504-551 30-83 (89)
143 3tnu_B Keratin, type II cytosk 67.1 74 0.0025 28.9 13.2 10 391-400 8-17 (129)
144 1x79_B RAB GTPase binding effe 67.0 72 0.0025 28.8 11.7 39 418-456 16-54 (112)
145 1gk4_A Vimentin; intermediate 66.6 52 0.0018 27.8 10.4 40 439-478 32-71 (84)
146 4h22_A Leucine-rich repeat fli 66.5 65 0.0022 28.7 11.0 19 460-478 8-26 (103)
147 1zbd_B Rabphilin-3A; G protein 66.4 10 0.00035 35.3 6.3 30 659-689 55-89 (134)
148 3ol1_A Vimentin; structural ge 65.7 77 0.0026 28.6 15.3 42 509-550 19-60 (119)
149 3k29_A Putative uncharacterize 65.7 98 0.0034 29.8 20.8 54 390-453 15-68 (169)
150 2b9c_A Striated-muscle alpha t 65.5 90 0.0031 29.3 15.4 70 467-543 51-120 (147)
151 3s4r_A Vimentin; alpha-helix, 64.1 72 0.0025 27.6 11.0 37 445-481 54-90 (93)
152 2ic6_A Nucleocapsid protein; h 63.3 68 0.0023 27.2 10.1 26 514-539 49-74 (78)
153 1m1j_A Fibrinogen alpha subuni 63.1 1.2E+02 0.0043 33.4 14.8 70 509-578 57-126 (491)
154 1x79_B RAB GTPase binding effe 62.4 90 0.0031 28.2 12.5 11 597-607 93-103 (112)
155 3hnw_A Uncharacterized protein 62.0 1E+02 0.0035 28.6 14.7 37 509-545 88-124 (138)
156 2jee_A YIIU; FTSZ, septum, coi 61.5 76 0.0026 27.0 11.6 12 442-453 8-19 (81)
157 3cvf_A Homer-3, homer protein 60.6 67 0.0023 27.3 9.7 49 491-539 8-56 (79)
158 2xus_A Breast cancer metastasi 59.8 24 0.00082 27.4 6.1 41 496-538 6-46 (49)
159 2ic9_A Nucleocapsid protein; h 59.5 67 0.0023 28.2 9.7 26 514-539 49-74 (96)
160 2b5u_A Colicin E3; high resolu 59.0 2.3E+02 0.0078 31.7 20.4 18 356-373 264-281 (551)
161 4gkw_A Spindle assembly abnorm 56.9 1.2E+02 0.0042 28.0 22.6 43 498-540 48-90 (167)
162 2di0_A Activating signal coint 56.0 13 0.00045 31.0 4.4 38 168-205 13-50 (71)
163 3iox_A AGI/II, PA; alpha helix 55.7 1.6E+02 0.0056 32.8 14.3 22 589-610 88-109 (497)
164 2fiy_A Protein FDHE homolog; F 53.1 3.9 0.00013 43.2 1.1 47 657-704 180-231 (309)
165 1vp7_A Exodeoxyribonuclease VI 52.5 47 0.0016 29.4 7.7 58 459-516 28-85 (100)
166 3s9g_A Protein hexim1; cyclin 49.5 1E+02 0.0036 27.1 9.2 41 440-480 44-84 (104)
167 4emc_A Monopolin complex subun 49.4 73 0.0025 31.2 9.2 26 453-478 12-37 (190)
168 1m1j_C Fibrinogen gamma chain; 49.1 1.4E+02 0.0047 32.7 12.5 17 437-453 35-51 (409)
169 3cvf_A Homer-3, homer protein 48.7 1.2E+02 0.0042 25.6 9.7 25 461-485 13-37 (79)
170 3ghg_B Fibrinogen beta chain; 48.0 3.2E+02 0.011 30.2 15.3 32 506-537 159-190 (461)
171 1x8y_A Lamin A/C; structural p 47.8 56 0.0019 27.8 7.4 39 440-478 35-73 (86)
172 1uii_A Geminin; human, DNA rep 47.5 94 0.0032 26.6 8.4 47 487-536 26-72 (83)
173 1ci6_A Transcription factor AT 47.4 56 0.0019 26.2 6.9 41 499-539 19-59 (63)
174 2v4h_A NF-kappa-B essential mo 47.3 1.6E+02 0.0054 26.5 12.4 18 590-607 92-109 (110)
175 3ghg_C Fibrinogen gamma chain; 46.6 2.5E+02 0.0087 30.6 14.0 18 436-453 34-51 (411)
176 2zuo_A MVP, major vault protei 45.2 4.6E+02 0.016 31.2 22.3 32 506-537 686-717 (861)
177 1l8d_A DNA double-strand break 44.9 1.5E+02 0.0053 25.6 13.8 20 461-480 24-43 (112)
178 4fi5_A Nucleoprotein; structur 44.8 1E+02 0.0036 27.7 8.7 27 514-540 66-92 (113)
179 3ghg_B Fibrinogen beta chain; 44.0 1.9E+02 0.0064 32.1 12.5 96 512-610 90-185 (461)
180 3mq7_A Bone marrow stromal ant 43.8 1.9E+02 0.0064 26.3 14.4 27 511-537 72-98 (121)
181 3ajw_A Flagellar FLIJ protein; 42.4 1.9E+02 0.0065 26.0 16.9 24 512-535 76-99 (150)
182 4etp_A Kinesin-like protein KA 42.0 62 0.0021 35.1 8.4 27 508-534 8-34 (403)
183 1go4_E MAD1 (mitotic arrest de 41.5 90 0.0031 27.6 7.8 24 508-531 73-96 (100)
184 2b5u_A Colicin E3; high resolu 40.4 4.4E+02 0.015 29.6 16.7 33 413-445 322-354 (551)
185 2xv5_A Lamin-A/C; structural p 40.2 96 0.0033 25.9 7.4 43 437-479 9-51 (74)
186 3s4r_A Vimentin; alpha-helix, 39.7 1.8E+02 0.0063 25.0 11.8 21 461-481 23-43 (93)
187 1wgl_A TOLL-interacting protei 38.9 25 0.00084 28.1 3.4 38 170-207 11-48 (59)
188 2p2u_A HOST-nuclease inhibitor 38.7 1.2E+02 0.0041 29.0 9.0 57 554-610 18-74 (171)
189 3m9b_A Proteasome-associated A 38.6 23 0.00078 36.3 4.0 38 501-538 59-96 (251)
190 3swk_A Vimentin; cytoskeleton, 38.6 1.8E+02 0.0063 24.7 10.9 16 506-521 45-60 (86)
191 1d7m_A Cortexillin I; coiled-c 38.5 2E+02 0.0067 25.0 14.7 46 417-473 13-58 (101)
192 3jsv_C NF-kappa-B essential mo 38.5 2E+02 0.0069 25.1 9.9 31 504-534 10-40 (94)
193 1gk6_A Vimentin; intermediate 38.2 95 0.0033 24.6 6.8 40 439-478 6-45 (59)
194 1go4_E MAD1 (mitotic arrest de 38.0 1.3E+02 0.0043 26.7 8.1 46 439-484 32-91 (100)
195 3ibp_A Chromosome partition pr 37.6 1.5E+02 0.0053 30.9 10.0 13 597-609 92-104 (302)
196 1gmj_A ATPase inhibitor; coile 37.3 2E+02 0.0068 24.7 9.3 23 517-539 51-73 (84)
197 2w6b_A RHO guanine nucleotide 35.4 81 0.0028 24.9 5.7 19 521-539 14-32 (56)
198 3etw_A Adhesin A; antiparallel 35.3 2.6E+02 0.0088 25.4 14.0 27 471-497 30-56 (119)
199 1t2k_D Cyclic-AMP-dependent tr 34.8 1.6E+02 0.0056 23.1 7.8 39 501-539 20-58 (61)
200 2p22_C Protein SRN2; endosome, 33.9 3.4E+02 0.012 26.4 17.0 88 381-483 63-150 (192)
201 2wvr_A Geminin; DNA replicatio 32.8 1.5E+02 0.005 29.4 8.4 47 488-537 96-142 (209)
202 2dhy_A CUE domain-containing p 32.7 41 0.0014 27.6 3.9 39 167-205 17-55 (67)
203 3ol1_A Vimentin; structural ge 32.7 2.7E+02 0.0093 24.9 15.8 18 505-522 64-81 (119)
204 1fxk_A Prefoldin; archaeal pro 31.3 2.4E+02 0.0083 23.9 12.2 19 516-534 78-96 (107)
205 2wt7_A Proto-oncogene protein 31.2 2E+02 0.0068 22.9 7.8 41 499-539 19-59 (63)
206 3cl3_D NF-kappa-B essential mo 31.1 91 0.0031 28.7 6.2 38 503-540 62-99 (130)
207 3cve_A Homer protein homolog 1 30.9 2.3E+02 0.0079 23.5 10.8 38 502-539 13-50 (72)
208 1gmj_A ATPase inhibitor; coile 30.9 2.5E+02 0.0087 24.0 9.1 29 503-531 51-79 (84)
209 3okq_A BUD site selection prot 30.9 3.3E+02 0.011 25.4 14.2 94 438-539 26-122 (141)
210 4g3o_A E3 ubiquitin-protein li 30.1 61 0.0021 26.0 4.3 39 162-202 12-50 (58)
211 2dq0_A Seryl-tRNA synthetase; 29.8 4.1E+02 0.014 29.2 12.6 15 464-478 41-55 (455)
212 3l4q_C Phosphatidylinositol 3- 29.5 3.4E+02 0.012 26.1 10.3 31 436-466 13-43 (170)
213 3u06_A Protein claret segregat 29.3 1.2E+02 0.0041 33.0 8.1 22 514-535 7-28 (412)
214 1fxk_A Prefoldin; archaeal pro 29.0 2.7E+02 0.0092 23.7 11.4 18 505-522 81-98 (107)
215 1gd2_E Transcription factor PA 28.3 2.1E+02 0.0073 23.5 7.5 15 440-454 29-43 (70)
216 2p22_C Protein SRN2; endosome, 28.2 4.3E+02 0.015 25.7 11.8 16 354-369 26-41 (192)
217 1m1j_C Fibrinogen gamma chain; 28.0 6E+02 0.021 27.6 13.3 22 511-532 92-113 (409)
218 3m91_A Proteasome-associated A 27.9 1.9E+02 0.0063 22.5 6.6 39 440-478 9-47 (51)
219 1wlq_A Geminin; coiled-coil; 2 27.1 2.6E+02 0.0089 23.9 7.9 46 489-537 20-65 (83)
220 2yy0_A C-MYC-binding protein; 26.8 54 0.0018 25.6 3.4 28 512-539 21-48 (53)
221 2zqm_A Prefoldin beta subunit 26.5 3.1E+02 0.011 23.6 13.6 26 509-534 83-108 (117)
222 3lay_A Zinc resistance-associa 26.1 2.4E+02 0.0082 27.1 8.7 22 460-481 112-133 (175)
223 3nmd_A CGMP dependent protein 26.0 2.3E+02 0.0078 23.6 7.2 26 508-533 38-63 (72)
224 2ejs_A Autocrine motility fact 25.5 81 0.0028 25.2 4.3 34 168-202 13-46 (58)
225 4dzn_A Coiled-coil peptide CC- 25.1 1.5E+02 0.005 20.4 4.8 18 515-532 7-24 (33)
226 1jnm_A Proto-oncogene C-JUN; B 25.0 1.4E+02 0.0048 23.6 5.8 41 499-539 18-58 (62)
227 3cl3_D NF-kappa-B essential mo 24.7 2.1E+02 0.007 26.4 7.3 11 440-450 37-47 (130)
228 2no2_A HIP-I, huntingtin-inter 24.6 3.7E+02 0.012 23.8 14.8 21 461-481 22-42 (107)
229 3uux_B Mitochondrial division 24.3 5.3E+02 0.018 26.1 11.0 36 496-531 191-226 (242)
230 3ghg_C Fibrinogen gamma chain; 24.0 3.7E+02 0.013 29.3 10.7 38 497-534 32-69 (411)
231 1z60_A TFIIH basal transcripti 23.9 41 0.0014 26.9 2.3 41 660-702 16-59 (59)
232 2oto_A M protein; helical coil 23.5 4.4E+02 0.015 24.3 20.1 130 464-605 25-155 (155)
233 3m62_A Ubiquitin conjugation f 23.5 81 0.0028 38.2 5.7 53 654-707 886-938 (968)
234 2xnx_M M protein, M1-BC1; cell 23.2 2.8E+02 0.0094 26.1 8.1 23 513-535 69-91 (146)
235 1ik9_A DNA repair protein XRCC 23.2 5.5E+02 0.019 25.3 13.2 24 516-539 181-205 (213)
236 1hjb_A Ccaat/enhancer binding 22.7 3.6E+02 0.012 23.0 8.4 29 511-539 44-72 (87)
237 3vem_A Helicase protein MOM1; 22.7 4.3E+02 0.015 23.9 10.2 36 412-453 39-74 (115)
238 3swk_A Vimentin; cytoskeleton, 22.6 3.5E+02 0.012 22.9 11.2 42 441-482 43-84 (86)
239 2wt7_B Transcription factor MA 22.6 3.8E+02 0.013 23.2 10.9 63 469-539 22-84 (90)
240 1wle_A Seryl-tRNA synthetase; 22.4 5.5E+02 0.019 28.6 12.0 103 413-522 42-149 (501)
241 1ify_A HHR23A, UV excision rep 22.2 82 0.0028 23.8 3.7 39 87-128 7-45 (49)
242 4i0x_B ESAT-6-like protein MAB 22.2 3.6E+02 0.012 22.8 8.4 52 509-560 24-78 (103)
243 3efg_A Protein SLYX homolog; x 22.0 1.9E+02 0.0067 24.1 6.3 44 440-483 14-57 (78)
244 3q0x_A Centriole protein; cent 21.7 2.7E+02 0.0093 28.0 8.4 46 440-485 178-223 (228)
245 2ekf_A Ancient ubiquitous prot 21.6 94 0.0032 25.1 4.0 34 169-203 14-47 (61)
246 1wt6_A Myotonin-protein kinase 21.4 3.8E+02 0.013 22.8 8.6 57 430-486 14-70 (81)
247 3i2d_A E3 SUMO-protein ligase 21.3 54 0.0019 35.4 3.3 47 659-706 249-299 (371)
248 2dgc_A Protein (GCN4); basic d 21.1 1.4E+02 0.005 23.9 5.1 33 501-533 28-60 (63)
249 2xnx_M M protein, M1-BC1; cell 20.6 1.9E+02 0.0065 27.2 6.4 26 450-475 69-94 (146)
250 2zuo_A MVP, major vault protei 20.6 1.1E+03 0.039 28.0 20.7 14 436-449 700-713 (861)
251 4etp_A Kinesin-like protein KA 20.2 2.5E+02 0.0086 30.3 8.4 42 511-552 4-45 (403)
252 3mov_A Lamin-B1; LMNB1, B-type 20.2 4.2E+02 0.014 22.9 9.1 58 422-479 26-83 (95)
253 4emc_A Monopolin complex subun 20.0 3.9E+02 0.013 26.2 8.7 30 510-539 27-56 (190)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.7e-12 Score=106.29 Aligned_cols=54 Identities=35% Similarity=0.907 Sum_probs=49.8
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeeccCC
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGASS 716 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a~~ 716 (716)
....|+||++.+.+++|+||||.+||..|+..+ ..||+||.+|..++++|.+.|
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhceEEeecCCC
Confidence 467899999999999999999999999999964 789999999999999998765
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.19 E-value=7.6e-12 Score=102.67 Aligned_cols=55 Identities=31% Similarity=0.582 Sum_probs=49.7
Q ss_pred ccccccccccccceEEe--cCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFL--PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll--pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|+||++.+++++++ ||||.+||..|+..+... ...||+||.+|..++++|.+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence 56899999999998888 999999999999998765 46899999999999999975
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=9.7e-12 Score=102.35 Aligned_cols=55 Identities=24% Similarity=0.600 Sum_probs=50.2
Q ss_pred ccccccccccccceEEe--cCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFL--PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll--pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|+||++++++++++ ||||.+||..|+..+... ...||+||.+|..++++|++
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence 45899999999999998 999999999999998765 46899999999999999975
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.14 E-value=2.5e-11 Score=104.14 Aligned_cols=52 Identities=33% Similarity=0.869 Sum_probs=47.9
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeeccC
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGAS 715 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a~ 715 (716)
...|+||++.+.+++++||||.+||..|+..+ ..||+||.+|..++++|.+.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeCc
Confidence 34899999999999999999999999999876 58999999999999999864
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=8.3e-11 Score=99.28 Aligned_cols=51 Identities=31% Similarity=0.884 Sum_probs=47.0
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|.||++.+.+++++||||.+||..|+..+ ..||+||.+|..++++|.+
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEeeC
Confidence 45899999999999999999999999999887 6899999999999999974
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=97.84 Aligned_cols=51 Identities=33% Similarity=0.916 Sum_probs=46.5
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|+||++.+.+++++||||.+||..|+... ..||+||.+|..++++|.+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCcEEEecC
Confidence 34799999999999999999999999999764 7899999999999999974
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.92 E-value=6.7e-09 Score=97.54 Aligned_cols=48 Identities=38% Similarity=0.851 Sum_probs=43.2
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceE
Q 005057 660 RDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRI 709 (716)
Q Consensus 660 ~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i 709 (716)
..|+||++.+.+++++||||. ||..|+..|... ...||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 479999999999999999998 999999999876 578999999997654
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.2e-08 Score=84.77 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=43.4
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhccc--CCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK--GKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~--r~~~CP~CR~~i~~ 707 (716)
.....|+||++...+.+++||||. ||..|+..|... +...||+||.+|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 346789999999999999999999 999999999862 45689999999864
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.68 E-value=9.8e-09 Score=84.19 Aligned_cols=54 Identities=33% Similarity=0.858 Sum_probs=46.5
Q ss_pred ccccccccccccc-eEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVS-IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~-vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|+||++...+ ++++||||. ||..|+..|... ...||.||.++...+..+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 59 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQ-NPTCPLCKVPVESVVHTIES 59 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHH-SCSTTTTCCCCCCEECCCCS
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhC-cCcCcCCChhhHhhhhcccc
Confidence 5689999999888 588999999 999999998876 46899999999987766543
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=8.5e-09 Score=85.91 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=45.9
Q ss_pred CccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 658 CDRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
....|.||++.+.+.+.+ +|||. ||..|+..|... ...||+||.+|.....+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 356899999999988776 99999 999999999876 57899999999765544443
No 11
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.67 E-value=6e-09 Score=112.41 Aligned_cols=51 Identities=41% Similarity=1.028 Sum_probs=46.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
...|+||++.+.+++++||||.+||..|+..+ ..||+||.+|..++++|.+
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeEEeecC
Confidence 46899999999999999999999999999876 6899999999999999964
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=5.2e-09 Score=86.46 Aligned_cols=54 Identities=30% Similarity=0.873 Sum_probs=46.9
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeecc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGA 714 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a 714 (716)
....|.||++.+.+ +++||+|. ||..|+..|... ...||+||.+|.....+|..
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDR-HRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCC-CSSCHHHHHCTTCCCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHC-cCcCCCcCCcccCCCccccC
Confidence 35689999999988 88999999 999999998874 67999999999887776653
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=84.75 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.8
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|.||++...+.+++||+|. ||..|+..|... ...||+||.+|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 35689999999999999999999 999999998776 4789999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=82.49 Aligned_cols=53 Identities=30% Similarity=0.644 Sum_probs=44.3
Q ss_pred ccccccccccccce-------EEecCCCcccChhhHHHhcccCCCCCCCCCcccc--ceEEeec
Q 005057 659 DRDCIICLKDEVSI-------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE--QRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~~~v-------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~--~~i~i~~ 713 (716)
...|.||++...+. ++++|||. ||..|+..|... ...||.||.++. .+.++|.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 45899999987664 78999999 999999999876 569999999987 4566663
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.6e-08 Score=86.03 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=43.1
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|+||++.+.+.+++||||. ||..|+..|... ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHC-CCcCCCcCccccc
Confidence 45689999999999999999999 999999999876 5689999999864
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=83.11 Aligned_cols=49 Identities=22% Similarity=0.454 Sum_probs=43.3
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|+||++...+.+.++|||. ||..|+..|...+...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35789999999999988999999 99999999986556789999999864
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.60 E-value=2.6e-08 Score=83.97 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=44.5
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|+||++.+.+.++++|||. ||..|+..|...+...||.||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 46789999999999999999999 99999999998767899999999864
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.59 E-value=1.2e-08 Score=84.16 Aligned_cols=52 Identities=31% Similarity=0.703 Sum_probs=43.3
Q ss_pred ccccccccccccce-------EEecCCCcccChhhHHHhcccCCCCCCCCCccccc--eEEee
Q 005057 659 DRDCIICLKDEVSI-------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ--RIRVF 712 (716)
Q Consensus 659 ~~~C~IC~~~~~~v-------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~--~i~i~ 712 (716)
...|.||++...+. ++++|||. ||..|+..|... ...||+||.++.. +.++|
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 56899999987665 88999999 999999999876 4699999999863 34444
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.59 E-value=2.1e-08 Score=92.27 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=43.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||++.+.+.+++||||. ||..|+..|...+...||.||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3589999999999999999999 99999999987656699999999975
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.7e-08 Score=82.44 Aligned_cols=48 Identities=33% Similarity=0.724 Sum_probs=41.4
Q ss_pred Cccccccccccccce-------EEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSI-------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~v-------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|.||++...+. ++++|||. ||..|+..|... ...||+||.+|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 356899999987665 88999998 999999999876 5689999999864
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.57 E-value=2.9e-08 Score=77.80 Aligned_cols=47 Identities=36% Similarity=0.767 Sum_probs=40.8
Q ss_pred ccccccccccccc----eEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVS----IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~----vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|.||++...+ ++++||+|. ||..|+..|.... ..||+||.+|.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~-~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEG-YRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHT-CCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcC-CcCCCCCCcCCC
Confidence 4689999998755 889999998 9999999998874 789999998853
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.55 E-value=2.1e-08 Score=84.38 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=43.1
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccC------CCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKG------KATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r------~~~CP~CR~~i~~ 707 (716)
.....|+||++.+.+.+++||||. ||..|+..|.... ...||.||.++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 346789999999999999999999 9999999987652 5689999999864
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=4.4e-08 Score=83.01 Aligned_cols=49 Identities=35% Similarity=0.697 Sum_probs=42.9
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhccc-----CCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK-----GKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~-----r~~~CP~CR~~i~~ 707 (716)
....|.||++.+.+.+++||+|. ||..|+..|... +...||.||.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35689999999999999999999 999999998765 25689999999864
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.9e-08 Score=84.31 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=42.5
Q ss_pred CCccccccccccccc----eEEecCCCcccChhhHHHhcccC--CCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVS----IVFLPCAHQVLCASCSDNYGKKG--KATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~----vvllpCgH~vfC~~C~~~~~~~r--~~~CP~CR~~i~~ 707 (716)
.....|.||++.+.+ .++++|||. ||..|+..|.... ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345789999999888 889999999 9999999998763 4689999998743
No 25
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.53 E-value=4.2e-08 Score=80.72 Aligned_cols=50 Identities=34% Similarity=0.750 Sum_probs=41.7
Q ss_pred Cccccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceE
Q 005057 658 CDRDCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRI 709 (716)
Q Consensus 658 ~~~~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i 709 (716)
....|.||++.. ..++++||+|. ||..|+..|... ...||+||.+|....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 456899998765 45788999999 999999999877 458999999987643
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.53 E-value=5.6e-08 Score=76.31 Aligned_cols=46 Identities=35% Similarity=0.848 Sum_probs=39.6
Q ss_pred ccccccccccccc---eEEec-CCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVS---IVFLP-CAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~---vvllp-CgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|.||++...+ ++.+| |+|. ||..|+..|... ...||+||.+|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5689999998766 67777 9999 999999999876 578999999874
No 27
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.7e-08 Score=83.03 Aligned_cols=56 Identities=27% Similarity=0.618 Sum_probs=45.7
Q ss_pred Cccccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeeccC
Q 005057 658 CDRDCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFGAS 715 (716)
Q Consensus 658 ~~~~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~a~ 715 (716)
....|.||++.. ..++++||+|. ||..|+..|... ...||+||.+|.....+-.++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~s 72 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEV-RKVCPLCNMPVLQLAQLSGPS 72 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHH-CSBCTTTCCBCSSCCSCCCSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHc-CCcCCCcCcccccccccCCCC
Confidence 356899999875 34556799999 999999999877 458999999998877766554
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.51 E-value=3.2e-08 Score=83.03 Aligned_cols=49 Identities=24% Similarity=0.563 Sum_probs=42.4
Q ss_pred CccccccccccccceEEec-CCCcccChhhHHHhcccC-CCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLP-CAHQVLCASCSDNYGKKG-KATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllp-CgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~~ 707 (716)
....|.||++.+.+.+.+| |||. ||..|+..|.... ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3568999999999999999 9999 9999999998752 3689999998643
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.51 E-value=3.9e-08 Score=87.41 Aligned_cols=48 Identities=27% Similarity=0.684 Sum_probs=42.9
Q ss_pred ccccccccccccceEE-ecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVF-LPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvl-lpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||++.+.+.++ ++|||. ||..|+..|+......||.||.+|..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4589999999999999 999999 99999999988754689999999853
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.51 E-value=4.6e-08 Score=84.96 Aligned_cols=49 Identities=24% Similarity=0.553 Sum_probs=42.5
Q ss_pred CCccccccccccccceEEec-CCCcccChhhHHHhccc-CCCCCCCCCcccc
Q 005057 657 NCDRDCIICLKDEVSIVFLP-CAHQVLCASCSDNYGKK-GKATCPCCRVPIE 706 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllp-CgH~vfC~~C~~~~~~~-r~~~CP~CR~~i~ 706 (716)
.....|+||++.+.+.+++| |||. ||..|+..|+.. +...||.||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34679999999999999999 9999 999999998754 3468999999973
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=4.3e-08 Score=79.91 Aligned_cols=48 Identities=31% Similarity=0.716 Sum_probs=39.3
Q ss_pred ccccccccc-cccce----EEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLK-DEVSI----VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~-~~~~v----vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
+..|+||++ ...+. ++++|||. ||..|+..+...+...||.||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 458999999 44443 57899999 99999999976656789999999854
No 32
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.50 E-value=4.6e-08 Score=85.46 Aligned_cols=49 Identities=31% Similarity=0.638 Sum_probs=42.0
Q ss_pred CCccccccccccccc---eEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVS---IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~---vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|.||++.+.. ++.+||+|. ||..|+..|... ...||+||.+|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999987766 788999999 999999999876 5699999998865
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.3e-08 Score=82.56 Aligned_cols=49 Identities=33% Similarity=0.787 Sum_probs=42.6
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhccc-----CCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK-----GKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~-----r~~~CP~CR~~i~~ 707 (716)
....|.||++...+.+++||||. ||..|+..|... +...||.||.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45789999999999999999999 999999998754 35789999998864
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.49 E-value=6.1e-08 Score=82.91 Aligned_cols=55 Identities=27% Similarity=0.685 Sum_probs=44.1
Q ss_pred Cccccccccccc--cceEEec--CCCcccChhhHHHhcccCCCCCCCCCccccceEEeec
Q 005057 658 CDRDCIICLKDE--VSIVFLP--CAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 658 ~~~~C~IC~~~~--~~vvllp--CgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~ 713 (716)
....|+||++.. .+.+++| |||. ||..|+..++......||.||.++.....+|.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 456899999976 4566776 9999 99999999876556789999999987654443
No 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.47 E-value=6.4e-08 Score=92.54 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=43.9
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
...|+||++.+.+.+++||||. ||..|+..|...+...||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4589999999999999999999 999999999887556899999998754
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.9e-08 Score=77.75 Aligned_cols=44 Identities=32% Similarity=0.720 Sum_probs=38.7
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhccc--CCCCCCCC
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK--GKATCPCC 701 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~--r~~~CP~C 701 (716)
.....|+||++.+.+.+++||||. ||..|+..|... +...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 346789999999999999999999 999999999864 45689998
No 37
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=7.8e-08 Score=104.87 Aligned_cols=54 Identities=26% Similarity=0.667 Sum_probs=47.5
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEeec
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~~ 713 (716)
...|+||++...+++++||||. ||..|+..|...+...||+||.++.....++.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 3589999999999999999999 99999999887446799999999988766654
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.45 E-value=4.8e-08 Score=88.53 Aligned_cols=48 Identities=35% Similarity=0.774 Sum_probs=43.1
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|.||++...+.+.++|||. ||..|+..|...+...||.||.++..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4589999999999999999999 99999999987766799999999864
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.4e-07 Score=74.51 Aligned_cols=43 Identities=26% Similarity=0.788 Sum_probs=37.8
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhccc--CCCCCCCC
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKK--GKATCPCC 701 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~--r~~~CP~C 701 (716)
....|.||++...+.++++|||. ||..|+..|... +...||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 35689999999999999999999 999999999643 46789998
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.41 E-value=1.2e-07 Score=91.43 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=42.8
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||++.+.+.+.+ ||||. ||..|+..|+..+...||.||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999998887 99999 99999999988767789999999853
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=9.1e-08 Score=80.17 Aligned_cols=48 Identities=35% Similarity=0.768 Sum_probs=40.1
Q ss_pred Cccccccccccccc---eEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVS---IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~---vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|.||++.... ++.+||+|. ||..|+..|... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 35689999986544 478899999 999999999876 4689999998864
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=5.4e-08 Score=77.55 Aligned_cols=45 Identities=29% Similarity=0.699 Sum_probs=39.3
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|.||++.+.+.+++||||. ||..|+..+ ...||+||.++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccC----CCCCCcCCcEeec
Confidence 45789999999999999999999 999998773 4689999998863
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.40 E-value=1.4e-07 Score=79.47 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=40.6
Q ss_pred Cccccccccccc---cceEEecCCCcccChhhHHHhcccCCCCCCCCCccccce
Q 005057 658 CDRDCIICLKDE---VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQR 708 (716)
Q Consensus 658 ~~~~C~IC~~~~---~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~ 708 (716)
....|.||++.+ ..++++||+|. ||..|+..|... ...||+||.+|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 356899998765 44567899999 999999999876 46899999998764
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.39 E-value=1.5e-07 Score=84.49 Aligned_cols=47 Identities=23% Similarity=0.659 Sum_probs=42.4
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||++.+.+.+.+ +|||. ||..|+..|... ...||.||.++..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHh-CCcCcCCCccccc
Confidence 56899999999999987 99999 999999999876 4789999999875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=1.3e-07 Score=84.76 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=41.6
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccC--CCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKG--KATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r--~~~CP~CR~~i~~ 707 (716)
...|+||++...+.+++||||. ||..|+..|.... ...||.||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3589999999999999999999 9999999998752 2489999998864
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.38 E-value=1.6e-07 Score=82.80 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=41.8
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|.||++...+.+++ +|||. ||..|+..|... ...||.||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 45899999999998887 89999 999999999876 4689999998864
No 47
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=8.1e-07 Score=87.45 Aligned_cols=51 Identities=12% Similarity=-0.054 Sum_probs=44.7
Q ss_pred cCCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 656 TNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 656 ~~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
......|+||++-+.+.|++||||. ||..|+..|+..+...||+|+.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456899999999999999999999 99999999987643479999999864
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.32 E-value=1.8e-07 Score=85.32 Aligned_cols=50 Identities=24% Similarity=0.535 Sum_probs=44.0
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|+||++...+.+.++|||. ||..|+..|.......||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345689999999999999999999 99999999987655599999999865
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.31 E-value=2.2e-07 Score=83.83 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=38.6
Q ss_pred ccccccccccccc------------------eEEecCCCcccChhhHHHhcc----cCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVS------------------IVFLPCAHQVLCASCSDNYGK----KGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~------------------vvllpCgH~vfC~~C~~~~~~----~r~~~CP~CR~~i~~ 707 (716)
+..|.||++.... +.+++|+|. ||..|+..|.. .....||+||..|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3589999987643 337899999 99999999984 235689999998864
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.30 E-value=2.7e-07 Score=83.67 Aligned_cols=48 Identities=29% Similarity=0.501 Sum_probs=43.2
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|+||++.+.+.+.++|||. ||..|+..|.......||.||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4589999999999999999999 99999999987656789999999864
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.22 E-value=5e-07 Score=92.76 Aligned_cols=49 Identities=12% Similarity=-0.037 Sum_probs=43.7
Q ss_pred CccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
....|+||++-+.+.|++||||. ||..|+..|+..+...||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 46789999999999999999999 99999999987655569999999864
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.20 E-value=8.6e-07 Score=79.17 Aligned_cols=49 Identities=14% Similarity=-0.076 Sum_probs=44.2
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|+||++-+.+.|++||||. ||..|+..|+.. ...||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 446799999999999999999999 999999999875 6799999999864
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.18 E-value=8.2e-07 Score=76.83 Aligned_cols=49 Identities=14% Similarity=-0.090 Sum_probs=44.0
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|+||++-+.+.|+++|||. ||..|+..|+.. ...||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 346799999999999999999999 999999999875 5799999998864
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=4.7e-07 Score=82.48 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=39.9
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|+||++.+.+.+++ +|||. ||..|+..+.. ..||.||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc---CCCcCCCCcCc
Confidence 46899999999999998 99999 99999999865 58999999984
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.18 E-value=1e-06 Score=78.40 Aligned_cols=49 Identities=18% Similarity=-0.005 Sum_probs=44.0
Q ss_pred CCccccccccccccceEEecCC-CcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCA-HQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCg-H~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|+||++-+.+.|+++|| |. ||..|+..|+.. ...||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 3467999999999999999999 99 999999999876 5789999998864
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=9.8e-07 Score=75.47 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=37.0
Q ss_pred ccccccccccccc--------------eEE-ecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVS--------------IVF-LPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~--------------vvl-lpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|.||++...+ ++. .+|+|. |+..|+..|... ...||+||.++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHh-CCCCCCcCCCcch
Confidence 3468888876644 444 459999 999999999887 4699999998853
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.16 E-value=3.4e-07 Score=86.61 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=42.8
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPI 705 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i 705 (716)
.....|+||++...+.+.++|||. ||..|+..|+..+...||.||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 346799999999999999999999 999999999877556899999975
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.15 E-value=7.6e-07 Score=81.40 Aligned_cols=47 Identities=34% Similarity=0.754 Sum_probs=41.2
Q ss_pred ccccccccccccce-------EEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 659 DRDCIICLKDEVSI-------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 659 ~~~C~IC~~~~~~v-------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
...|.||++...+. ++++|||. ||..|+..|... ...||+||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 56899999988776 89999999 999999999876 4699999999864
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.04 E-value=1.8e-06 Score=78.82 Aligned_cols=53 Identities=30% Similarity=0.679 Sum_probs=44.2
Q ss_pred Cccccccccccccce-------EEecCCCcccChhhHHHhcccCCCCCCCCCcccc--ceEEee
Q 005057 658 CDRDCIICLKDEVSI-------VFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE--QRIRVF 712 (716)
Q Consensus 658 ~~~~C~IC~~~~~~v-------vllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~--~~i~i~ 712 (716)
....|.||++...+. +.++|||. ||..|+..|... ...||+||.++. .++++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 467899999977664 88999999 999999999877 569999999986 356665
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.97 E-value=2.5e-06 Score=82.42 Aligned_cols=50 Identities=24% Similarity=0.535 Sum_probs=44.0
Q ss_pred CCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.....|+||++...+.+.++|||. ||..|+..+...+...||.||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 346799999999999999999999 99999999987645699999999865
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.94 E-value=4.6e-06 Score=75.31 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=38.5
Q ss_pred ccccccccccccc------------------eEEecCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVS------------------IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~------------------vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|.||++.+.. +++++|+|. |+..|+..|+.. ...||+||.++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4579999886542 467899999 999999999877 578999999874
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=8.9e-06 Score=71.45 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=39.8
Q ss_pred CccccccccccccceEEec-CCCcccChhhHHHhcccC-----CCCCCC--CCcc
Q 005057 658 CDRDCIICLKDEVSIVFLP-CAHQVLCASCSDNYGKKG-----KATCPC--CRVP 704 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllp-CgH~vfC~~C~~~~~~~r-----~~~CP~--CR~~ 704 (716)
....|+||++-+.+.|++| |||. ||..|+..|+... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999999999996 9999 9999999998752 358999 9855
No 63
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.76 E-value=0.0076 Score=59.51 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 457 e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
+.++...+.|..++..++.+.+.+|.+...+.. ........+++++..|+......+.+|..+++..-.+
T Consensus 52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~----------e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA----------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334455677777777777777777655433221 1223455566666666666666666666666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 005057 537 QQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 537 kq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~k~ 611 (716)
....+.........+..-..++.+......+.++ +.....+.||++++++.|+.|+.-+..+.
T Consensus 122 Er~~R~~~~SleD~e~kln~aiEr~alLE~El~E------------Ke~l~~~~QRLkdE~rDLk~El~v~~~~~ 184 (189)
T 2v71_A 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDE------------KESLLVSVQRLKDEARDLRQELAVRERQQ 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHCCC---------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555555555555444444444433222233321 11234567889999999999988766543
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.72 E-value=0.0083 Score=61.79 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
..|.+++.++..+..+++.....+..++.+...++.+.+..+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666555555555555555555555555555333
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.68 E-value=6.2e-06 Score=75.85 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=0.4
Q ss_pred ccccccccccccc------------------eEEecCCCcccChhhHHHhcccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVS------------------IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~------------------vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~ 706 (716)
...|.||++...+ +++++|+|. |+..|+..|... ...||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4589999987653 334699999 999999999887 568999999864
No 66
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.60 E-value=0.00012 Score=90.50 Aligned_cols=9 Identities=22% Similarity=-0.012 Sum_probs=3.9
Q ss_pred cccCCCCCC
Q 005057 47 SYHLGLNDP 55 (716)
Q Consensus 47 ~~~~~~~~~ 55 (716)
+-.|+|.+|
T Consensus 301 ~~~l~l~~~ 309 (1184)
T 1i84_S 301 RNDLLLEGF 309 (1184)
T ss_dssp HHHTTCCCT
T ss_pred HHHcCCCCh
Confidence 334445444
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=66.82 Aligned_cols=54 Identities=22% Similarity=0.505 Sum_probs=42.3
Q ss_pred ccccccccccc--cceEEecCC-----CcccChhhHHHhcccC-CCCCCCCCccccceEEeec
Q 005057 659 DRDCIICLKDE--VSIVFLPCA-----HQVLCASCSDNYGKKG-KATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~--~~vvllpCg-----H~vfC~~C~~~~~~~r-~~~CP~CR~~i~~~i~i~~ 713 (716)
...|.||++.. .+.+++||. |. |...|+..|.... ...||+||..+....++.-
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 46899999754 456689996 99 9999999998763 3589999999876554433
No 68
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.58 E-value=0.00015 Score=89.73 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 005057 380 HQIKDLERQVKER 392 (716)
Q Consensus 380 ~~~~~l~~~~~~~ 392 (716)
.-+.-+|..+..|
T Consensus 819 ~a~~~iQ~~~r~~ 831 (1184)
T 1i84_S 819 ESIFCIQYNVRSF 831 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445544433
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.56 E-value=3e-05 Score=80.28 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=42.7
Q ss_pred CCccccccccccccceEEe-cCCCcccChhhHHHhccc-CCCCCCC--CCccccc
Q 005057 657 NCDRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKK-GKATCPC--CRVPIEQ 707 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~-r~~~CP~--CR~~i~~ 707 (716)
.....|+||++.+.+.|.. .|||. ||..|+..++.. +...||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999999999975 99999 999999999875 3458999 9997753
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.47 E-value=8.9e-05 Score=65.93 Aligned_cols=51 Identities=27% Similarity=0.535 Sum_probs=41.1
Q ss_pred ccccccccccc-eEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEee
Q 005057 661 DCIICLKDEVS-IVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRVF 712 (716)
Q Consensus 661 ~C~IC~~~~~~-vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i~ 712 (716)
.|.+|--.... .-++||.|. ||..|+..+.+++...||.|+.+|..+..+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 47777654433 347899997 9999999998877889999999999887654
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.35 E-value=5.1e-05 Score=66.23 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=34.9
Q ss_pred ccccccccccccceEE---ecCCCcccChhhHHHhccc----C---CCCCCC--CCcc
Q 005057 659 DRDCIICLKDEVSIVF---LPCAHQVLCASCSDNYGKK----G---KATCPC--CRVP 704 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvl---lpCgH~vfC~~C~~~~~~~----r---~~~CP~--CR~~ 704 (716)
...|.||++......+ .+|||. ||..|+..++.. + ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999987654332 379999 999999997753 2 247999 9988
No 72
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.00 E-value=0.033 Score=68.30 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 005057 524 EKIKELQQCLARIQQDQKETE 544 (716)
Q Consensus 524 ~KI~~le~el~qakq~~~~~e 544 (716)
.++.+|+++.+.+++..++++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444
No 73
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.96 E-value=0.02 Score=70.18 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=5.1
Q ss_pred ccccCCCCCC
Q 005057 46 LSYHLGLNDP 55 (716)
Q Consensus 46 ~~~~~~~~~~ 55 (716)
++-.|+|.+|
T Consensus 273 ~~~~l~L~~~ 282 (1080)
T 2dfs_A 273 EFKTLRLGNA 282 (1080)
T ss_dssp GGGGTCCCCT
T ss_pred HHHHccCCCH
Confidence 4444555554
No 74
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.91 E-value=0.15 Score=52.46 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=6.3
Q ss_pred ccccccccc
Q 005057 660 RDCIICLKD 668 (716)
Q Consensus 660 ~~C~IC~~~ 668 (716)
..|.-|+-.
T Consensus 199 ~~C~GC~~~ 207 (256)
T 3na7_A 199 QACGGCFIR 207 (256)
T ss_dssp TBCTTTCCB
T ss_pred CccCCCCee
Confidence 468888753
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.83 E-value=0.0004 Score=56.41 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=43.3
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccCCCCCCCCCccccc--eEEee
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ--RIRVF 712 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~--~i~i~ 712 (716)
...|+||.+-..+.|+. +|||. ||..|+..|+.. ..+||+++.++.. .+.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 35799999999999999 99999 999999999876 3579999998843 34444
No 76
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.62 E-value=0.32 Score=46.51 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~ 520 (716)
++...+.++.++...+......-...+.+...+..|+|.+- +..|.++-+--....+.....|+....|++++.
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT------asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT------ASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777888888888888443 445666655444445666778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 005057 521 NEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 521 ~~k~KI~~le~el~qakq~~ 540 (716)
+.+..|..++.++..++...
T Consensus 126 e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888763
No 77
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.45 E-value=0.62 Score=45.05 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 416 MLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 416 ~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
.||.|-|-..+++|...++ .+.++.+|..+..+..-+....+....|+.++..|..+++..+
T Consensus 21 kLk~EsE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 21 LLRTESDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555665555443 2334444444444444333334444555555555555555333
No 78
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.18 E-value=1.1 Score=60.56 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005057 423 ETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETE 469 (716)
Q Consensus 423 e~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e 469 (716)
+.+|+...+..|.++ ...+.+|..+|.....+++..+....+++.+
T Consensus 1918 ~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~ 1963 (3245)
T 3vkg_A 1918 EQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQ 1963 (3245)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665544 3445555555555555554444444444333
No 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.08 E-value=1.2 Score=60.28 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 524 EKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 524 ~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
+++.+++++++.++...++.+++.++.++..+++.++.+...+++++++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333333444433
No 80
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.95 E-value=1.3 Score=42.85 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528 (716)
Q Consensus 486 e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~ 528 (716)
..+..+.++.++-...-.....+|++++.||.++..++.--.+
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q 87 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666666544333
No 81
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.80 E-value=1.4 Score=42.14 Aligned_cols=88 Identities=10% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE 524 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~ 524 (716)
+|..|.++-..++.+..++..|+.+...+...+.. .+.+ +.+...+-...|.++..|...+.++..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~s-------eekasqrEd~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQ-------AEKYSQKEDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555656666665555544433332 2222 222333334455556666666666655
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 005057 525 KIKELQQCLARIQQDQKETESK 546 (716)
Q Consensus 525 KI~~le~el~qakq~~~~~e~~ 546 (716)
+....+..++.+....+.+++.
T Consensus 92 RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444443
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.59 E-value=0.079 Score=59.94 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
.+.++.+++++..++..+++.+.++.++.++++.+++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 83
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.52 E-value=1.8 Score=41.40 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH----
Q 005057 381 QIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV---- 456 (716)
Q Consensus 381 ~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~ql---- 456 (716)
||..|+.||++=.+=|..|.-.+++ +..|+..- -+. -+....++.+||.+|.-+...+
T Consensus 1 r~~~lE~qlkeaae~ad~KyeEvaR-~E~dLEra------EER-----------ae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 1 RMKQLEDKVEELLSKNYHLENEVAR-LKKLLERA------EER-----------AELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHH------HHH-----------HHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4788999999988888888888887 33333211 111 1222344445555544333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 457 ---DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (716)
Q Consensus 457 ---e~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el 533 (716)
++++.+....+.++..|...++.+...+...++. ...+|+.+-+|..++...+.+...+.+++
T Consensus 63 ~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs--------------v~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 63 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--------------VTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555444444444433 33567777788888888888888888888
Q ss_pred HHHHHhhHHHHHH
Q 005057 534 ARIQQDQKETESK 546 (716)
Q Consensus 534 ~qakq~~~~~e~~ 546 (716)
.++-.....+...
T Consensus 129 d~tl~el~~~~~~ 141 (155)
T 2efr_A 129 KQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 8877776666544
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.46 E-value=0.43 Score=45.32 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 406 ~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
||..-+..|.-.....++.+|..+-+..-......||..||.+|..++...+-++.+|.+..+++..+..+++.+.-.+.
T Consensus 18 rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566667777888777766666666778999999999999999999999999999999999888885554444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 486 e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
..+ ..+..|.++|...-..+..++..-.++.+..
T Consensus 98 ~aE---------------------~k~~eLEeeL~~~~~nlKsLE~~eekas~rE 131 (147)
T 2b9c_A 98 LSE---------------------GKCAELEEELKTVTNNLKSLEDKVEELLSKN 131 (147)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 333 3333556666655556666655544444443
No 85
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.20 E-value=0.011 Score=47.67 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=37.7
Q ss_pred CccccccccccccceEEecCCCc----ccChhhHHHhccc-CCCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVSIVFLPCAHQ----VLCASCSDNYGKK-GKATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~vvllpCgH~----vfC~~C~~~~~~~-r~~~CP~CR~~i~~ 707 (716)
....|.||++...+..+.||.+. .|=..|+..|... +...||+|+.+|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35689999987666667997642 1557899999864 46799999998853
No 86
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.06 E-value=2.1 Score=39.48 Aligned_cols=83 Identities=13% Similarity=0.276 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
..+..++.++.++...+.+......+|+..+..+..++..+...+..-...+.++-++-....++...+|.++..+...+
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888888888888888888888888887776655554444455555554444444444444444444444
Q ss_pred HHH
Q 005057 520 ANE 522 (716)
Q Consensus 520 ~~~ 522 (716)
+..
T Consensus 93 eee 95 (129)
T 2fxo_A 93 EDE 95 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 87
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.95 E-value=0.027 Score=47.54 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=40.6
Q ss_pred ccccccccccccceE-EecCCCcccChhhHHHhcccC-CCCCCCCCccccceEEeec
Q 005057 659 DRDCIICLKDEVSIV-FLPCAHQVLCASCSDNYGKKG-KATCPCCRVPIEQRIRVFG 713 (716)
Q Consensus 659 ~~~C~IC~~~~~~vv-llpCgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~~~i~i~~ 713 (716)
...|.||++....-. -..|+|. |=..|+..|+.++ ...||.||.++..-+.-+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 468999998654322 2379999 9999999999774 2689999999876554433
No 88
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.37 E-value=3.2 Score=38.43 Aligned_cols=117 Identities=26% Similarity=0.366 Sum_probs=69.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHH-hhhhhH--
Q 005057 369 DQKDEIVVTMLHQIKDLERQVKERKEW----------AHQKAMQAARKLSNDLTELKMLRMEREETQRLKK-GKQTLE-- 435 (716)
Q Consensus 369 d~k~e~~~~l~~~~~~l~~~~~~~~~w----------a~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkk-ekqeLE-- 435 (716)
..||-||..|-.-+..|++++.+..+= -+.||-|.-.|=.--+-|+-.||++.+-++|--. .-+.|-
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 457788999999999999999887642 3456656555555555566666665554433211 111110
Q ss_pred -------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 436 -------DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 436 -------e~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
.-.+.+|.+||.-|.... .-|..|-.-+-.|++++|..++++.|--.+|.
T Consensus 87 ~~qQnQQSlDiRKLrELEADLKEKD-------sMVe~LT~TiG~LrKELEdEklK~~E~MdSFE 143 (167)
T 4gkw_A 87 SQQQNQQSLDMRKLGELEADLKEKD-------SMVESLTETIGILRKELENEKLKAAENMDSFE 143 (167)
T ss_dssp HHHHHHHHHHHHHTHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHhhhhHHHHHHHHhHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012345555555443322 44555666666777777777777777766666
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.36 E-value=0.68 Score=52.24 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el 533 (716)
+.+..+.+..++++++.+.+.++.+++++.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQEN 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhh
Confidence 333444444444444444333333333333
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.89 E-value=3 Score=36.94 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 495 AKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 495 ~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.++....-.++...|.....+..++..++.||..++.++..+....
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555556667777777777777777776655543
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.73 E-value=5.8 Score=39.09 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=4.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhh
Q 005057 591 QRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 591 qr~k~~l~~LekELe~Lk~k~ 611 (716)
+.++..+++|+.|+..|+...
T Consensus 157 e~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 157 ESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777776554
No 92
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.60 E-value=3.2 Score=36.63 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 493 EVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 493 e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.+.++....-.++...|.....+..++...+.||..++.++..+....
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555566666677777777777777777777655553
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.45 E-value=3.8 Score=45.11 Aligned_cols=73 Identities=10% Similarity=0.178 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Q 005057 385 LERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVD 457 (716)
Q Consensus 385 l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle 457 (716)
.+.+++.-..-.|.-+.....--.....++..++.++...++-+++.....+.-++...+++.++.....|.+
T Consensus 326 F~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 3444444444444444433333333333444444444433333333333334455666677777766666654
No 94
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.30 E-value=0.015 Score=62.44 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=36.2
Q ss_pred Cccccccccccccc---e-----EEecCCCcccChhhHHHhcccC----------CCCCCCCCccccc
Q 005057 658 CDRDCIICLKDEVS---I-----VFLPCAHQVLCASCSDNYGKKG----------KATCPCCRVPIEQ 707 (716)
Q Consensus 658 ~~~~C~IC~~~~~~---v-----vllpCgH~vfC~~C~~~~~~~r----------~~~CP~CR~~i~~ 707 (716)
...+|.||++...+ + --.+|+|. |-..|+..|...- ...||.||.+|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35689999986544 1 12479999 9999999987541 1369999998864
No 95
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.26 E-value=0.65 Score=42.66 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=50.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005057 366 ITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEM 445 (716)
Q Consensus 366 v~~d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLsel 445 (716)
+++|.||.+|-.|-..+..|..+|..-+-=|+.- ....+.+|.+|
T Consensus 8 ~~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~-----------------------------------v~ql~~~i~~L 52 (120)
T 3i00_A 8 VNKDEKDHLIERLYREISGLKAQLENMKTESQRV-----------------------------------VLQLKGHVSEL 52 (120)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
Confidence 4789999999999998888877765443333333 33334566666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 005057 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (716)
Q Consensus 446 E~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~ 492 (716)
|.+|...+. ..+++..++..|+.+++.+.....+...+..
T Consensus 53 e~eL~e~r~-------~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~ 92 (120)
T 3i00_A 53 EADLAEQQH-------LRQQAADDCEFLRAELDELRRQREDTEKAQR 92 (120)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 666655543 3566677777888888776655555544433
No 96
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.75 E-value=17 Score=41.67 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhhh
Q 005057 590 FQRHKDDLQRLEQEFSRLKASA 611 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~Lk~k~ 611 (716)
.+.++...+.|++||..|+...
T Consensus 562 ~~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 562 KEGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3458888999999999998764
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=92.74 E-value=0.17 Score=58.03 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhcCCChHH
Q 005057 83 NLEFLYNEAISKLVALGYDEDV 104 (716)
Q Consensus 83 ~I~~~Y~~Al~rLp~~~~~~~~ 104 (716)
.++-||.++..-+-.+.|+...
T Consensus 98 t~~LlYlQvk~dIl~G~l~c~~ 119 (575)
T 2i1j_A 98 TLKLFYLQVKNAILSDEIYCPP 119 (575)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCH
Confidence 4578899988887776666553
No 98
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.25 E-value=0.63 Score=43.52 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~ 521 (716)
++..+.++.++...+......-...|.+...+..|+|.+- +..|.++-+---...+.....|+....|++++.+
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT------asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT------ASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH------HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667776776666777777888888888887443 3445555544333445556777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005057 522 EKEKIKELQQCLARIQQD 539 (716)
Q Consensus 522 ~k~KI~~le~el~qakq~ 539 (716)
.+..|..++.+++.++..
T Consensus 115 ~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 115 KDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877654
No 99
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.87 E-value=11 Score=35.83 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeE 518 (716)
..+.+.||..|..++.+++.+...+..++.....++. +. .++..++.++.+|+.+
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l~---------------------~~~~~~~~e~~~L~~~ 66 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----LK---------------------RELSDRDDEVKRLRED 66 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----HH---------------------THHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------------------HHHhhhhHHHHHHHHH
Confidence 4667888888888887777666665555543322221 11 1123466666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHH
Q 005057 519 IANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQ 598 (716)
Q Consensus 519 l~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~ 598 (716)
+.+++.+-...+.+..++.+....+-+. .=++|...|..++.++..++..+..-... +.....-|.
T Consensus 67 l~~E~~~R~~aE~~~~~ie~ElEeLTas------LFeEAN~MVa~ar~~~~~~e~r~~~L~~q--------l~e~~~~l~ 132 (154)
T 2ocy_A 67 IAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNMVADARKEKYAIEILNKRLTEQ--------LREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 7766666555555555444443322222 22344455555555555555222111111 222234477
Q ss_pred HHHHHHHHHhhhh
Q 005057 599 RLEQEFSRLKASA 611 (716)
Q Consensus 599 ~LekELe~Lk~k~ 611 (716)
.++.++..||.-.
T Consensus 133 ~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 133 TLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887655
No 100
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.08 E-value=8.4 Score=35.33 Aligned_cols=94 Identities=14% Similarity=0.277 Sum_probs=33.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW 508 (716)
Q Consensus 429 kekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~ 508 (716)
+.++++|.-+..++.++-....+-...+..+...+.++.+.+..|+.+++.++..-...+.++.++-
T Consensus 4 knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e------------- 70 (129)
T 3tnu_B 4 RSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE------------- 70 (129)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 4566677777777777777666655555555555555555555666665554433333332222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+...++...+.+|..++.++.+++..
T Consensus 71 ----~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 71 ----QRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 123344555666777777777766655
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.33 E-value=0.25 Score=56.52 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
.||..||++..++...+.++..+.+.|+.+....+.+.+.+..++.+.+...+++.....+. ++++..|..++
T Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~-------~~e~~~l~~~~ 414 (575)
T 2i1j_A 342 DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME-------AAERQKLEDEI 414 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHH
Confidence 47777888888888777777777777777777777776666666655555444433332222 22333444444
Q ss_pred HHHHHHHHHHHHH
Q 005057 520 ANEKEKIKELQQC 532 (716)
Q Consensus 520 ~~~k~KI~~le~e 532 (716)
.+...++..+.++
T Consensus 415 ~~~~~~~~~~~~~ 427 (575)
T 2i1j_A 415 RAKQEEVSRIQQE 427 (575)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 102
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.78 E-value=8 Score=35.59 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=29.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW 508 (716)
Q Consensus 429 kekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~ 508 (716)
+.++++|.-+..++.++-....+-...+..+...+.++.+.+..|+.+++.++..-...+.++.++-
T Consensus 6 knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e------------- 72 (131)
T 3tnu_A 6 KNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK------------- 72 (131)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------
Confidence 4556677777777777776666655555444444555555555555555544332222222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+...++...+.+|..++.++.+++..
T Consensus 73 ----~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 73 ----GRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133345555666777777777776655
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.94 E-value=3.9 Score=34.63 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.++...++....+..++...+.||..++.++..+....
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666777777777777766665553
No 104
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.42 E-value=15 Score=32.47 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 442 LselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
+++.+.++.++...+......-...+.+...+..|+|.+
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666777777777777777744
No 105
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.57 E-value=15 Score=32.44 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005057 507 AWEKQKAKLQEEIANEKEKIKEL 529 (716)
Q Consensus 507 ~~Ekq~~~LqeEl~~~k~KI~~l 529 (716)
.++.++..|+.++.+++.+-...
T Consensus 23 ~~~~e~~~L~~~l~eE~~~R~~a 45 (97)
T 2eqb_B 23 DRDDEVKRLREDIAKENELRTKA 45 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.40 E-value=11 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
.++.|+...+-.+..+++.+..++...+.+..+|-+.
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555666443
No 107
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=85.08 E-value=0.73 Score=35.84 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=33.1
Q ss_pred hHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhccc
Q 005057 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEI 206 (716)
Q Consensus 170 gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~~~ 206 (716)
.=|.+|...||.++..++-++|..|+.|+-.|+.+-.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999999999999987643
No 108
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.06 E-value=12 Score=32.23 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
..+..++.++.++...+++......+|+..+..+..+...+...
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888888888888888888887777777655544
No 109
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.37 E-value=23 Score=31.95 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 005057 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASG 454 (716)
Q Consensus 375 ~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~ 454 (716)
+.+|......|..++-.|++-..+.--.+-...+.=..|+..||..++. +++.+.+||-.+. ++|.+-+-+..
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~---l~~~iReLEq~ND----DLER~~R~t~~ 77 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ---LHKYVRELEQAND----DLERAKRATIV 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhch----HHHHHHHHHHh
Confidence 4667777888888888888765554443333333444444444444443 3333444443332 23444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 455 QVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 455 qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
-++--..++-.+...++.|..|++
T Consensus 78 SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343444444555555555555554
No 110
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.02 E-value=25 Score=32.12 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKW 547 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~ 547 (716)
...+..++..|+.+|...+..+...+.....+.....+++.++
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554444433333333
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.74 E-value=7.3 Score=43.65 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH-HHHH
Q 005057 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLS-EMEN 447 (716)
Q Consensus 369 d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLs-elE~ 447 (716)
+-=|+.-++|-++|.+|.++|.+- .=.+.-+-|..+-+. +..+.-.++-+. .+++...++ +||+
T Consensus 53 glLdkqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~-------------E~Lr~rq~q~~d-NdNtynE~S~ELRR 117 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIM-------------EILRGDFSSANN-RDNTYNRVSEDLRS 117 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHH-------------HTTSSHHHHHHH-HHHHHHHTTHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHH-------------HHHHHHHHhhhc-cchhHHHHHHHHHH
Confidence 334555667778888888877665 333333333321111 111111111111 122334444 5555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 448 el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
.+..++..++..-..++.|+.-++.++.+|..+..-..
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444445556666666666666654443333
No 112
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.61 E-value=25 Score=39.26 Aligned_cols=51 Identities=27% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHH
Q 005057 435 EDTTMKRLSEMENALRKASGQVDRANAA----VRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 435 Ee~t~krLselE~el~k~~~qle~a~~~----~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
|..+..+|+....+|.|....-+.+... +.+..+++++|++|-++++..=.
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa 58 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNA 58 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445556666666665554433333333 34445566667777776664333
No 113
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.13 E-value=0.54 Score=41.35 Aligned_cols=50 Identities=22% Similarity=0.651 Sum_probs=39.9
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccceEEe
Q 005057 659 DRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQRIRV 711 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~~i~i 711 (716)
...|..|.-..++. +.|....+|-.|...+... ...||+|..++...+++
T Consensus 28 ~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCe--eeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 45899999877764 4576555999999998776 56899999998877765
No 114
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.99 E-value=0.48 Score=40.44 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=28.8
Q ss_pred ccccccccccccceEEecC----CCcccChhhHHHhccc
Q 005057 659 DRDCIICLKDEVSIVFLPC----AHQVLCASCSDNYGKK 693 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvllpC----gH~vfC~~C~~~~~~~ 693 (716)
...|++|.++--++-|+.| .|. ||+.|....++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccHHHHHh
Confidence 4689999999999888888 467 999999887654
No 115
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.80 E-value=29 Score=31.27 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005057 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (716)
Q Consensus 462 ~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~ 541 (716)
..+.|...+..|+.+.+.+|.+...+. +........+++++..|+......+.+|..+++..-.+..+.+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~----------~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQY----------AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 456677777777777776665443322 1223345556666666666666666666666666555554443
Q ss_pred HHHH
Q 005057 542 ETES 545 (716)
Q Consensus 542 ~~e~ 545 (716)
....
T Consensus 74 ~t~~ 77 (111)
T 2v66_B 74 ATIV 77 (111)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 3333
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=81.65 E-value=21 Score=40.87 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKA 400 (716)
Q Consensus 369 d~k~e~~~~l~~~~~~l~~~~~~~~~wa~~k~ 400 (716)
|...+.-..|..++.+.-.++....+=+..+.
T Consensus 375 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~ 406 (592)
T 1f5n_A 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDR 406 (592)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777766666665555555443
No 117
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.49 E-value=45 Score=36.02 Aligned_cols=47 Identities=6% Similarity=0.064 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEK 510 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ek 510 (716)
+.++..+..|+..++..+..-.++-..+..+.+.-++.++.....|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn 109 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDN 109 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchH
Confidence 44555555666666655555555555566566655555555444443
No 118
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.38 E-value=20 Score=38.74 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 005057 513 AKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKEL 556 (716)
Q Consensus 513 ~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~kee 556 (716)
..++..|++++..|..+.+....+.+..+.+...|++.++...+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~d 106 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANN 106 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455555555555555555555555555556666665444443
No 119
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=81.22 E-value=0.58 Score=40.62 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=26.0
Q ss_pred cccccccccc-ccceEE--ecCCCcccChhhHHH-hc
Q 005057 659 DRDCIICLKD-EVSIVF--LPCAHQVLCASCSDN-YG 691 (716)
Q Consensus 659 ~~~C~IC~~~-~~~vvl--lpCgH~vfC~~C~~~-~~ 691 (716)
+..|.||.+. +..++. ++|+|. ||..|+.. +.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHHhc
Confidence 4589999975 566666 899999 99999997 53
No 120
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.97 E-value=48 Score=36.90 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
..++..|+..++..+.||.+++..+.
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 121
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.40 E-value=19 Score=32.41 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
.++...|+.+..-+.++++.++.|.+.++.+.
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666555443
No 122
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.21 E-value=13 Score=33.20 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl 519 (716)
..|.++|+...++....+ .|-.+.+.+-=+.+.+|-...+++..+.++.+.-+.+...+...-.....|+.++
T Consensus 2 dsL~EvEEKyrKAMVsnA-------QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNA-------QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp ------CCTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH-------HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555443222 2222222333334445555555555555444433333333333333333344433
Q ss_pred HHHHHH
Q 005057 520 ANEKEK 525 (716)
Q Consensus 520 ~~~k~K 525 (716)
...+..
T Consensus 75 ~~lk~~ 80 (103)
T 4h22_A 75 AEVKEA 80 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 123
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.79 E-value=18 Score=40.54 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhh
Q 005057 597 LQRLEQEFSRLKAS 610 (716)
Q Consensus 597 l~~LekELe~Lk~k 610 (716)
...++|+|+++-..
T Consensus 178 Y~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 178 YEDQQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 33455556555443
No 124
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.53 E-value=27 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 507 AWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 507 ~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
++.+.+..++.+++....++...+..|..+
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666555555555555443
No 125
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.18 E-value=13 Score=34.64 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
..++.+...|+.++.+++.+-...+.+..++.+
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ 74 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNK 74 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655554444444443333
No 126
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.06 E-value=42 Score=36.50 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKI 526 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI 526 (716)
+++.+|.|+..|..+|..+...|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.35 E-value=18 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 005057 514 KLQEEIANEKEKIKEL 529 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~l 529 (716)
.|++++..++.++..+
T Consensus 114 ~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 128
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.23 E-value=69 Score=34.75 Aligned_cols=9 Identities=11% Similarity=0.088 Sum_probs=2.9
Q ss_pred CCCCCCCCC
Q 005057 60 NPNADDHGW 68 (716)
Q Consensus 60 ~~~~~~~~w 68 (716)
.....-.-|
T Consensus 16 ~~~~tltvW 24 (471)
T 3mq9_A 16 IEEGKLVIW 24 (471)
T ss_dssp --CCSEEEE
T ss_pred CCCceEEEE
Confidence 333333445
No 129
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.26 E-value=48 Score=30.08 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE 476 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e 476 (716)
.+++.+|+.+|..+..++..+...+.+|++++..+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 34577788888888877766667777776666655443
No 130
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=75.07 E-value=29 Score=30.90 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..+.++...+.||.+++++++.+...
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777888999999888876543
No 131
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.98 E-value=84 Score=34.96 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 515 LQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAE 572 (716)
Q Consensus 515 LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE 572 (716)
+...|.+++.+|.++......+++....+...|++.+....+....+..-..++|+..
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555554444444444433333343333
No 132
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=74.85 E-value=2.4 Score=43.15 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=36.6
Q ss_pred ccccccccccccceEEe-cCCCcccChhhHHHhcccC-CCCCCCCCccccce
Q 005057 659 DRDCIICLKDEVSIVFL-PCAHQVLCASCSDNYGKKG-KATCPCCRVPIEQR 708 (716)
Q Consensus 659 ~~~C~IC~~~~~~vvll-pCgH~vfC~~C~~~~~~~r-~~~CP~CR~~i~~~ 708 (716)
-..|.+|.+-...-..- .|+|. |=..|...+...+ ...||.|+.+...-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 56899999865433332 28888 8899999987653 46899999988654
No 133
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=73.69 E-value=2.1 Score=40.85 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=25.9
Q ss_pred ccccccccccc-----cceEEecCCCcccChhhHHHhcccCCCCCCCCCc
Q 005057 659 DRDCIICLKDE-----VSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRV 703 (716)
Q Consensus 659 ~~~C~IC~~~~-----~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~ 703 (716)
...|.+|...+ .-.+-..|.|. +|..|.........=.|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHH
Confidence 45899999864 33444567777 7888863222212234555553
No 134
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.18 E-value=47 Score=28.99 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
....+|+.+.+.+..+++.+..+. ...-..+.+.......+..+...++.++.....++..-+.++..+
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~-------~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEA-------ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444332 233334445555566666666667777666666666666555544
No 135
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.35 E-value=56 Score=29.86 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 005057 390 KERKEWAHQKAM 401 (716)
Q Consensus 390 ~~~~~wa~~k~~ 401 (716)
.+.-.|-+.|+-
T Consensus 9 ~eaE~~y~~K~e 20 (131)
T 3tnu_A 9 KDAEEWFFTKTE 20 (131)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344456666653
No 136
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=71.02 E-value=39 Score=27.85 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 414 lk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
|.-.|+++|++ ..+.++++|.-+..++.+|-....+-...+..+...+.+|.+.+..|+.+++.+
T Consensus 11 l~eiRaQYE~i--a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESV--AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666663 345677788888888887777766666555555555555555555555555543
No 137
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.80 E-value=13 Score=33.91 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=21.7
Q ss_pred ccccccccccccce----EEecCCCcccChhhHHHh
Q 005057 659 DRDCIICLKDEVSI----VFLPCAHQVLCASCSDNY 690 (716)
Q Consensus 659 ~~~C~IC~~~~~~v----vllpCgH~vfC~~C~~~~ 690 (716)
...|.+|...|.-. ---.||+. ||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v-fC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI-FCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE-ECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeE-EChHHhCCc
Confidence 35799999876421 12358998 999997653
No 138
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=69.86 E-value=81 Score=30.34 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 419 MEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 419 ~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
.-.+++++..++++.+-+....+|.++|.+..+.. ...+.+...|+.+|+
T Consensus 16 ~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~----------~h~~~k~~qlre~~d 65 (169)
T 3k29_A 16 DRVDRAEKVVKEKRRLLELEQEKLRERESERDKVK----------NHYMQKIRQLREQLD 65 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 33445555555555555555555555555543332 334444555555555
No 139
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.70 E-value=56 Score=28.47 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~e 532 (716)
++.+..-+...+..+..+|++...+..+|...+.....++++
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 344455566667777778888888877777777666655554
No 140
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.73 E-value=4.8 Score=35.00 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=35.8
Q ss_pred cccccccccccc----eEEecCCCcc--cChhhHHHhcccCCCCCCCCCccccc
Q 005057 660 RDCIICLKDEVS----IVFLPCAHQV--LCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 660 ~~C~IC~~~~~~----vvllpCgH~v--fC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
..|.||-+..-- -+|+.|..-. +|..|.+--...+...||.|.+.+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 489999986322 2466665543 69999998777778899999998863
No 141
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.44 E-value=49 Score=30.15 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 460 NAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 460 ~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
+..+..|.+++..++.+++.++.++.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888877665433
No 142
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.31 E-value=36 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANE------KEKIKELQQCLARIQQDQKETESKWRQEQ 551 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~------k~KI~~le~el~qakq~~~~~e~~~kqee 551 (716)
++..+|.++..|+.++..- -.++..+..+++++.+...++..+|-..+
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666542 35677788888888888888888886543
No 143
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.11 E-value=74 Score=28.88 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 005057 391 ERKEWAHQKA 400 (716)
Q Consensus 391 ~~~~wa~~k~ 400 (716)
+.-.|-+.|+
T Consensus 8 eaE~~y~~K~ 17 (129)
T 3tnu_B 8 EAESWYQTKY 17 (129)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344655555
No 144
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.96 E-value=72 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Q 005057 418 RMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV 456 (716)
Q Consensus 418 R~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~ql 456 (716)
+.-+++.+++..++++||+.-...-.+...++..+..++
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~ 54 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRA 54 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555553333344445555554333
No 145
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=66.56 E-value=52 Score=27.84 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
...|..+|.+|.+++...++....|+.|+.-+-.|+.|+.
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567777888888887777777777777776666666654
No 146
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.47 E-value=65 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005057 460 NAAVRRLETENAEIRAEME 478 (716)
Q Consensus 460 ~~~~~~Le~e~a~lr~e~E 478 (716)
..+|+++|..|+.|..+.-
T Consensus 8 EEKyrKAMVsnAQLDNEKs 26 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKT 26 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHH
Confidence 3578888888888877655
No 147
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.42 E-value=10 Score=35.27 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=18.6
Q ss_pred cccccccccccc-----ceEEecCCCcccChhhHHH
Q 005057 659 DRDCIICLKDEV-----SIVFLPCAHQVLCASCSDN 689 (716)
Q Consensus 659 ~~~C~IC~~~~~-----~vvllpCgH~vfC~~C~~~ 689 (716)
...|.+|...+. ..+-..|.|. +|..|...
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~~ 89 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGVE 89 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcc-cccccCCc
Confidence 458999998762 2233456666 66666543
No 148
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.72 E-value=77 Score=28.55 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQE 550 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqe 550 (716)
|.++..|+.+|......-..++-++..++...+.+-.++..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444443333333333333333333333333333
No 149
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=65.69 E-value=98 Score=29.76 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 390 KERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 390 ~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
+.+.|-|-+-|-+..+-|.++..+|+-+..+.++..+-+ +.++..|-..+.+.+
T Consensus 15 ~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~----------~~k~~qlre~~d~gt 68 (169)
T 3k29_A 15 KDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHY----------MQKIRQLREQLDDGT 68 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCC
Confidence 567788888888999889999999998888888754332 233555555555544
No 150
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.54 E-value=90 Score=29.29 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005057 467 ETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (716)
Q Consensus 467 e~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~ 543 (716)
+.....+..+++.++..+.+..+-|.++.. ++..+|..+.+..+-...+..++..|+.++..+-+..+.+
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~R-------Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVAR-------KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335556666666666666666666665443 3445555556666666666777777777777665554443
No 151
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.07 E-value=72 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 445 lE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
.|..|..++.+++.+.....+++.+...+..+.+..|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888887777776666677766666666666544
No 152
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=63.32 E-value=68 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..+.++...+.||.+++++++.....
T Consensus 49 ~R~~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 49 SRRAAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567778888999999988876543
No 153
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.11 E-value=1.2e+02 Score=33.44 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRK 578 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k 578 (716)
.+|-..+..-|++++..|..+++....+-+..+.+...|++.++...+.-..+.+.-.++|.-....+++
T Consensus 57 ~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666655555566666666676665555544444433333333333333333
No 154
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.39 E-value=90 Score=28.17 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 005057 597 LQRLEQEFSRL 607 (716)
Q Consensus 597 l~~LekELe~L 607 (716)
|.+|+++.+.|
T Consensus 93 L~rLQ~eNd~L 103 (112)
T 1x79_B 93 LVRLQKDNDSL 103 (112)
T ss_dssp -----------
T ss_pred HHHHHhhccch
Confidence 33344433333
No 155
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.02 E-value=1e+02 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETES 545 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~ 545 (716)
++++..|+.++...+.++..+.+++.+++.....++.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444444433333
No 156
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.46 E-value=76 Score=27.05 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhh
Q 005057 442 LSEMENALRKAS 453 (716)
Q Consensus 442 LselE~el~k~~ 453 (716)
+..||.+|..+-
T Consensus 8 leqLE~KIq~av 19 (81)
T 2jee_A 8 FEKLEAKVQQAI 19 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334454444433
No 157
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.60 E-value=67 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 491 ~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
|.++..+-+..-.+-..||.++..++..++..+.+-.+++.+|..+-+.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555566677777777777776666666666655444
No 158
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=59.76 E-value=24 Score=27.38 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 496 KREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 496 erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
.+...++..+..+|+|-+.|++++- +.+|.+++++++++++
T Consensus 6 rrr~e~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 6 RRRSECVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc
Confidence 4556778889999999999998774 5678899998887754
No 159
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=59.46 E-value=67 Score=28.19 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
..+.++...+.||.++.++++.+...
T Consensus 49 ~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 49 SRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667778888999999998877654
No 160
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.99 E-value=2.3e+02 Score=31.74 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=11.4
Q ss_pred CCCccccCcCCCCChhhH
Q 005057 356 DLNIDENLETITDDQKDE 373 (716)
Q Consensus 356 ~~~~d~~~~~v~~d~k~e 373 (716)
+-+..+...|.|++-.-|
T Consensus 264 g~nthDAII~FPe~Sg~e 281 (551)
T 2b5u_A 264 GGNTRDAVIRFPKDSGHN 281 (551)
T ss_dssp TTTEEEEEEECCGGGCCC
T ss_pred cCCccceEEECCCCCCCC
Confidence 334455558888866666
No 161
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.89 E-value=1.2e+02 Score=28.00 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 498 ekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
-....++-....+++.+|+.|+...++++...+..+......+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQ 90 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ 90 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHH
Confidence 3344566677888899999999998888888887777554443
No 162
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=55.99 E-value=13 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.3
Q ss_pred HhhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhcc
Q 005057 168 LAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (716)
Q Consensus 168 L~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~~ 205 (716)
+..+|..++..||+|..+-+..||..-+-|+..++..-
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 55899999999999999999999999999999887644
No 163
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.72 E-value=1.6e+02 Score=32.84 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHhhhhHHHHHHHHHHHHHhhh
Q 005057 589 DFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 589 E~qr~k~~l~~LekELe~Lk~k 610 (716)
++..|.+++.+..+++..|+..
T Consensus 88 kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 88 KLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666677777777776653
No 164
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=53.13 E-value=3.9 Score=43.22 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=35.5
Q ss_pred CCccccccccccccceEEec----CCC-cccChhhHHHhcccCCCCCCCCCcc
Q 005057 657 NCDRDCIICLKDEVSIVFLP----CAH-QVLCASCSDNYGKKGKATCPCCRVP 704 (716)
Q Consensus 657 ~~~~~C~IC~~~~~~vvllp----CgH-~vfC~~C~~~~~~~r~~~CP~CR~~ 704 (716)
.....|+||-..+.-.++.. =|+ ..+|.-|...|...| ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-cCCcCCCCC
Confidence 34679999999887766642 343 238999999987764 489999986
No 165
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=52.54 E-value=47 Score=29.43 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 459 ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (716)
Q Consensus 459 a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~Lq 516 (716)
.+..|.+...+...|=.++|.-.+.+.++.+.|++-.+.-+.|.+.|...|.++..|.
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888888999999999999999999999999999999999999999999988873
No 166
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.47 E-value=1e+02 Score=27.11 Aligned_cols=41 Identities=37% Similarity=0.362 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~ 480 (716)
++++.||.+-.+++.+-......+++|+.+...|+.+-..+
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666544444556666666666555554433
No 167
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.37 E-value=73 Score=31.23 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 453 SGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 453 ~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
..|++.++.-+..|..+|..|..+++
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888888888887777766
No 168
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.13 E-value=1.4e+02 Score=32.70 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005057 437 TTMKRLSEMENALRKAS 453 (716)
Q Consensus 437 ~t~krLselE~el~k~~ 453 (716)
...+.|.+||+.|.++.
T Consensus 35 ~V~~~l~~LE~~l~els 51 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQAT 51 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH
Confidence 34456666766664433
No 169
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.68 E-value=1.2e+02 Score=25.61 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 461 AAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
.+++.++.+|..|+.....++..+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4555556666655555554444433
No 170
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=47.99 E-value=3.2e+02 Score=30.24 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
...+..+..|+.-+....+||.+|+..+.+..
T Consensus 159 ~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 159 SNIPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667777778877777777777777665443
No 171
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.78 E-value=56 Score=27.82 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
..|..+|.+|.+++...++....|+.|+.-+..|+.|+.
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555666666665555555555555555555544443
No 172
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.50 E-value=94 Score=26.60 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 487 SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (716)
Q Consensus 487 ~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qa 536 (716)
++..|+.++++-++.+.... .+-..|+++++..+..|..+.+++.++
T Consensus 26 se~YWk~lAE~RR~AL~eaL---~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 26 SSQYWKEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444443211 122234444444444444444444433
No 173
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.35 E-value=56 Score=26.22 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 499 KKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 499 kk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.+.......++.+...|..+-..++.+|..|+.++..+++.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888877765
No 174
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.27 E-value=1.6e+02 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=10.2
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 005057 590 FQRHKDDLQRLEQEFSRL 607 (716)
Q Consensus 590 ~qr~k~~l~~LekELe~L 607 (716)
.+.+.+++..|+.++++|
T Consensus 92 Ke~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 92 KEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344556666666665543
No 175
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.63 E-value=2.5e+02 Score=30.63 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005057 436 DTTMKRLSEMENALRKAS 453 (716)
Q Consensus 436 e~t~krLselE~el~k~~ 453 (716)
....+.|.+||..|..+.
T Consensus 34 ~~V~~~l~~L~~~l~~is 51 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVE 51 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 344566777777775544
No 176
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=45.23 E-value=4.6e+02 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
..+|.|+..=+.+-+.++.++-+++.+.+...
T Consensus 686 g~Lerqki~d~a~aE~~r~~Llel~a~s~ave 717 (861)
T 2zuo_A 686 GRLERQKILDQSEAEKARKELLELEAMSMAVE 717 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 44566655555555666666666666655433
No 177
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.94 E-value=1.5e+02 Score=25.63 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005057 461 AAVRRLETENAEIRAEMEAS 480 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~ 480 (716)
.....++.+...++..+..+
T Consensus 24 ~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 24 QRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555544
No 178
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=44.76 E-value=1e+02 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 514 KLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
..+.++...+.||.+++++++....+.
T Consensus 66 ~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 66 DREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677788889999999999877664
No 179
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.04 E-value=1.9e+02 Score=32.12 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 005057 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQ 591 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~q 591 (716)
.......|.+++..|.++...-..+.+....|...|+..++.+...-..+..-++.+|+..... .+.+....+..++
T Consensus 90 e~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~---~~~~~~~~~~~i~ 166 (461)
T 3ghg_B 90 ERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYI---DETVNSNIPTNLR 166 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHH---HHHHHTHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHH---HhhhhccchhHHH
Confidence 3344444444555555555555555555555555555554444433222222223333322221 1112222333444
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 005057 592 RHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 592 r~k~~l~~LekELe~Lk~k 610 (716)
-++..+..+.+.|++|+..
T Consensus 167 ~l~~~~~~~~~~i~~l~~~ 185 (461)
T 3ghg_B 167 VLRSILENLRSKIQKLESD 185 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 180
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.80 E-value=1.9e+02 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 511 QKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 511 q~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
++..|+.||..++++|.....++++++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 181
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=42.36 E-value=1.9e+02 Score=25.97 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 512 KAKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~q 535 (716)
+..|...|...+..|..++.++..
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~ 99 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDL 99 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.97 E-value=62 Score=35.13 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
++.++..|++++.+.+..|.+++.++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 183
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.47 E-value=90 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
.++.+..|++|++.++.+|..++.
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446667888888888888776654
No 184
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.42 E-value=4.4e+02 Score=29.56 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=19.4
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005057 413 ELKMLRMEREETQRLKKGKQTLEDTTMKRLSEM 445 (716)
Q Consensus 413 Elk~LR~ekee~e~lkkekqeLEe~t~krLsel 445 (716)
++...|+|.++++.....+++....|.+-+-+.
T Consensus 322 ~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~ 354 (551)
T 2b5u_A 322 NYERARAELNQANEDVARNQERQAKAVQVYNSR 354 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777666666444444444333
No 185
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.19 E-value=96 Score=25.86 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (716)
Q Consensus 437 ~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea 479 (716)
.....|..+|.+|..++...+.....|+.|+.-+-.|+.|+..
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999988888888888888877777777653
No 186
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.73 E-value=1.8e+02 Score=25.02 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005057 461 AAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k 481 (716)
.+|+-||++|..|..+.+.++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999988776554
No 187
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.86 E-value=25 Score=28.14 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=32.6
Q ss_pred hHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhcccC
Q 005057 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP 207 (716)
Q Consensus 170 gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~~~~ 207 (716)
.-+..|...||.++....-.-|..++.|+..||.+--.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56778999999999999888888999999999876544
No 188
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=38.71 E-value=1.2e+02 Score=29.00 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 005057 554 KELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKAS 610 (716)
Q Consensus 554 keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe~Lk~k 610 (716)
.+.+++.+-..+.++.++++........++.+...+...+++++..|+..|..+-..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777777777788888888888888999999999988877654
No 189
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.65 E-value=23 Score=36.32 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq 538 (716)
...++..++.+..+|.+++.+++++|..+++|+.++++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555556666677777777777777777666553
No 190
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.57 E-value=1.8e+02 Score=24.66 Aligned_cols=16 Identities=13% Similarity=0.217 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005057 506 LAWEKQKAKLQEEIAN 521 (716)
Q Consensus 506 ~~~Ekq~~~LqeEl~~ 521 (716)
+..|..+..|++.+..
T Consensus 45 ~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 45 EEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3444444444444443
No 191
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=38.54 E-value=2e+02 Score=24.98 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005057 417 LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (716)
Q Consensus 417 LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~l 473 (716)
|.-++---+.+.+++++|+ +.+..+++|.+.-+..++.++.++...
T Consensus 13 Le~EK~S~eeL~kQk~eL~-----------~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLN-----------SLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433445666666644 444444444444444555555544433
No 192
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.45 E-value=2e+02 Score=25.11 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 504 ~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
++...|+-+..-+.++.+.++.+.+.+..+.
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~E 40 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVME 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554433
No 193
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=38.22 E-value=95 Score=24.56 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 439 ~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
...|..+|.++.+++...++....|+.|+.-+..|+.|+.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4568889999999998888888888888887777777665
No 194
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.04 E-value=1.3e+02 Score=26.68 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhh--hHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005057 439 MKRLSEMENALRKAS--GQV------------DRANAAVRRLETENAEIRAEMEASKLSA 484 (716)
Q Consensus 439 ~krLselE~el~k~~--~ql------------e~a~~~~~~Le~e~a~lr~e~Ea~k~~a 484 (716)
++++..||.+|.+.. +.. .=+...++.++.+...|++|++.++...
T Consensus 32 r~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 32 EEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777632 222 2345566667778888888888776543
No 195
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=37.65 E-value=1.5e+02 Score=30.94 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhh
Q 005057 597 LQRLEQEFSRLKA 609 (716)
Q Consensus 597 l~~LekELe~Lk~ 609 (716)
-..|++++++|..
T Consensus 92 k~~Le~~ierLs~ 104 (302)
T 3ibp_A 92 KNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 3456667777655
No 196
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.30 E-value=2e+02 Score=24.67 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005057 517 EEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 517 eEl~~~k~KI~~le~el~qakq~ 539 (716)
++|...+..|..+++++...++.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 197
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.38 E-value=81 Score=24.89 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005057 521 NEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 521 ~~k~KI~~le~el~qakq~ 539 (716)
+++..+..++++..++++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 198
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.29 E-value=2.6e+02 Score=25.42 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 005057 471 AEIRAEMEASKLSAAESVTTCLEVAKR 497 (716)
Q Consensus 471 a~lr~e~Ea~k~~a~e~~~~~~e~~er 497 (716)
...++..|++...+.+....+.++.++
T Consensus 30 ~~eka~AE~A~~~La~~~~l~~~i~er 56 (119)
T 3etw_A 30 NEERAQADAARQALAQNEQVYNELSQR 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 199
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.78 E-value=1.6e+02 Score=23.07 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
.......+|.++..|..+-...+.+|..+..++.++++.
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777777777888888887776653
No 200
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=33.89 E-value=3.4e+02 Score=26.43 Aligned_cols=88 Identities=15% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005057 381 QIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRAN 460 (716)
Q Consensus 381 ~~~~l~~~~~~~~~wa~~k~~qaa~~L~~~~~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~ 460 (716)
.+++++.++..+. ..+..| +.-...|...+..++....+.+.|+...+++..+|-.++..--.+ +
T Consensus 63 ~~q~~~~~~e~l~--------s~ae~l---l~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp----~ 127 (192)
T 2p22_C 63 PLTDFAGKIHAFR--------DQFKQL---EENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGD----I 127 (192)
T ss_dssp CCHHHHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH----H
T ss_pred hHHHHHHHHHHHH--------HHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----H
Confidence 4556666665552 233333 223345666677777788888999999999999997777432222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 005057 461 AAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
.-+.+|....++.+.+-+.+-..
T Consensus 128 ~L~~~L~~a~~e~eeeS~~l~~~ 150 (192)
T 2p22_C 128 ALKKKLEQNTKKLDEESSQLETT 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655544433
No 201
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.80 E-value=1.5e+02 Score=29.39 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 488 VTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 488 ~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
+.+|+.++++-++.+.... .+-..|+++|+..+..|..+.+++.+++
T Consensus 96 e~YWk~lAE~RR~AL~eaL---eEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444443211 1223445555555555555555544444
No 202
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.71 E-value=41 Score=27.61 Aligned_cols=39 Identities=8% Similarity=-0.050 Sum_probs=33.0
Q ss_pred HHhhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhhcc
Q 005057 167 SLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (716)
Q Consensus 167 SL~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~~~ 205 (716)
.+...|..|...||.+......|-|..++.|+..|+..-
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345667789999999999999999999999999997543
No 203
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.66 E-value=2.7e+02 Score=24.89 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANE 522 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~ 522 (716)
.+..|..+..|++.+..+
T Consensus 64 r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHH
Confidence 344555555555555543
No 204
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.33 E-value=2.4e+02 Score=23.95 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005057 516 QEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 516 qeEl~~~k~KI~~le~el~ 534 (716)
..+++....++..++.++.
T Consensus 78 ~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 205
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.20 E-value=2e+02 Score=22.86 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 499 KKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 499 kk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
++....+..++.++..|..+-..++..|..|..++.+++..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777787777777766654
No 206
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.10 E-value=91 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~~ 540 (716)
.+.+++|..+..=+.-..+.|+|+++|+.--.++-+.-
T Consensus 62 lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeY 99 (130)
T 3cl3_D 62 MQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEY 99 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444445567778888877766665553
No 207
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.94 E-value=2.3e+02 Score=23.55 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 502 ~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
-.+-+.||.++..++..++..+.+-..++.+|..+-+.
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777777777776666666666555444
No 208
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.91 E-value=2.5e+02 Score=24.00 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 503 k~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
..+....+++..|+++|+..+.+|..+..
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555666666666666665543
No 209
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.90 E-value=3.3e+02 Score=25.40 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 005057 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKL-- 515 (716)
Q Consensus 438 t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~L-- 515 (716)
-..++.+|..-+.-++. |-+.-.++=..+....+..++..++.++..+...+. .++-.-+ ..||+++...
T Consensus 26 LvtkVDDLQD~VE~LRk--DV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~----~ekP~WK--KiWE~EL~~Vce 97 (141)
T 3okq_A 26 LLSKVDDLQDVIEIMRK--DVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID----TEKPHWK--KTWEAELDKVCE 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchhH--HHHHHHHHHHHH
Confidence 33455555555544442 333333444455666666777766666665555444 2332222 2477776654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 516 -QEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 516 -qeEl~~~k~KI~~le~el~qakq~ 539 (716)
|+.+.-+..-+.-|++.+..+.+.
T Consensus 98 EQqfl~~QedL~~DL~eDL~ka~et 122 (141)
T 3okq_A 98 EQQFLTLQEELILDLKEDLGKALET 122 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455555555544444
No 210
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=30.08 E-value=61 Score=25.96 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhh
Q 005057 162 QLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRAS 202 (716)
Q Consensus 162 ~i~~rSL~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~ 202 (716)
++.. -|..||--+++.||+++....+|=|... .++..-+
T Consensus 12 ~~~s-ql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~Ti 50 (58)
T 4g3o_A 12 YFQG-QLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITT 50 (58)
T ss_dssp HHHH-HHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHH
T ss_pred hhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHH
Confidence 3443 5778999999999999999999999876 5665543
No 211
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.84 E-value=4.1e+02 Score=29.18 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005057 464 RRLETENAEIRAEME 478 (716)
Q Consensus 464 ~~Le~e~a~lr~e~E 478 (716)
+++..+...|+++..
T Consensus 41 r~~~~~~~~l~~~~n 55 (455)
T 2dq0_A 41 RTKLKEINRLRHERN 55 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 212
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.46 E-value=3.4e+02 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005057 436 DTTMKRLSEMENALRKASGQVDRANAAVRRL 466 (716)
Q Consensus 436 e~t~krLselE~el~k~~~qle~a~~~~~~L 466 (716)
|....+|.++..+....+.+-|+--..|-++
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~ 43 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRT 43 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666667766666664433333333333
No 213
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.27 E-value=1.2e+02 Score=33.04 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005057 514 KLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 514 ~LqeEl~~~k~KI~~le~el~q 535 (716)
.|.+|+.+.++++..+++++.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~ 28 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQ 28 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 214
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.02 E-value=2.7e+02 Score=23.69 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 505 LLAWEKQKAKLQEEIANE 522 (716)
Q Consensus 505 l~~~Ekq~~~LqeEl~~~ 522 (716)
+..+++++..++.++.+.
T Consensus 81 i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 215
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.30 E-value=2.1e+02 Score=23.50 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhh
Q 005057 440 KRLSEMENALRKASG 454 (716)
Q Consensus 440 krLselE~el~k~~~ 454 (716)
..|.+||.++..+..
T Consensus 29 ~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 29 DHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666655543
No 216
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.17 E-value=4.3e+02 Score=25.74 Aligned_cols=16 Identities=6% Similarity=0.401 Sum_probs=9.9
Q ss_pred ccCCCccccCcCCCCC
Q 005057 354 MRDLNIDENLETITDD 369 (716)
Q Consensus 354 ~~~~~~d~~~~~v~~d 369 (716)
..++|+.+++.-.|-+
T Consensus 26 ~~~~~LP~~L~~LS~~ 41 (192)
T 2p22_C 26 SKNIPLPEGINLLSSK 41 (192)
T ss_dssp CCCCCCSSGGGSCTTH
T ss_pred ccCCCCCHHHHhCCHH
Confidence 4566777777555544
No 217
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.98 E-value=6e+02 Score=27.60 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005057 511 QKAKLQEEIANEKEKIKELQQC 532 (716)
Q Consensus 511 q~~~LqeEl~~~k~KI~~le~e 532 (716)
++.+|+.-+......|..|+..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~ 113 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDM 113 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHH
Confidence 3333333333333333333333
No 218
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.94 E-value=1.9e+02 Score=22.52 Aligned_cols=39 Identities=8% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~E 478 (716)
.++.++..++..+..+.++-.....+...++..|+.+++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444455555555555555554
No 219
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.12 E-value=2.6e+02 Score=23.87 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (716)
Q Consensus 489 ~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qak 537 (716)
..|+.++++-++.+.... .+-..|+++++..+..|..+.+++.+++
T Consensus 20 ~YWk~lAE~Rr~AL~eaL---~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEAL---KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp THHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444443221 1222344555555555555555544433
No 220
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.81 E-value=54 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 512 KAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 512 ~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+..|+.|.++.+.|+..+.+++++++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777766654
No 221
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.47 E-value=3.1e+02 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
++.+..|.+.+.....++..++..+.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 222
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.09 E-value=2.4e+02 Score=27.15 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005057 460 NAAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 460 ~~~~~~Le~e~a~lr~e~Ea~k 481 (716)
.+++++|..++..++.++....
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777776666433
No 223
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.00 E-value=2.3e+02 Score=23.60 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 508 WEKQKAKLQEEIANEKEKIKELQQCL 533 (716)
Q Consensus 508 ~Ekq~~~LqeEl~~~k~KI~~le~el 533 (716)
-+..+..|+.+|.+....|.+|+.++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 224
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=81 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.3
Q ss_pred HhhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhh
Q 005057 168 LAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRAS 202 (716)
Q Consensus 168 L~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~ 202 (716)
+..||--+++.||+++....+|=|.... ++..-+
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Ti 46 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITT 46 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHH
Confidence 4467778999999999999999998776 665543
No 225
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.08 E-value=1.5e+02 Score=20.41 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005057 515 LQEEIANEKEKIKELQQC 532 (716)
Q Consensus 515 LqeEl~~~k~KI~~le~e 532 (716)
|++|+...+..|..+.=+
T Consensus 7 lkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 226
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.03 E-value=1.4e+02 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 499 KKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 499 kk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
++.......+|.++..|..+-..++.+|..|..++.++++.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788888888888888888888887766544
No 227
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=24.71 E-value=2.1e+02 Score=26.40 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 005057 440 KRLSEMENALR 450 (716)
Q Consensus 440 krLselE~el~ 450 (716)
+++..++.++.
T Consensus 37 ~~~~~~~~Ele 47 (130)
T 3cl3_D 37 EQARQLESERE 47 (130)
T ss_dssp -----------
T ss_pred HHHHHhHHHHH
Confidence 44445555543
No 228
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.63 E-value=3.7e+02 Score=23.78 Aligned_cols=21 Identities=29% Similarity=0.329 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005057 461 AAVRRLETENAEIRAEMEASK 481 (716)
Q Consensus 461 ~~~~~Le~e~a~lr~e~Ea~k 481 (716)
..-..+++...+|..+++.++
T Consensus 22 q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 22 QAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 229
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.29 E-value=5.3e+02 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 496 KREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (716)
Q Consensus 496 erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~ 531 (716)
..-+..+.++..+|++-..|..+|...+.+|.-+++
T Consensus 191 ~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 191 QKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888888887777766554
No 230
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.98 E-value=3.7e+02 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 497 REKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (716)
Q Consensus 497 rekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~ 534 (716)
-++..-+.++.+|..+..+..--.++.+.|..++..+.
T Consensus 32 ye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 34444455555555555555555555555555555544
No 231
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.92 E-value=41 Score=26.93 Aligned_cols=41 Identities=22% Similarity=0.517 Sum_probs=28.7
Q ss_pred cccccccccccceEE---ecCCCcccChhhHHHhcccCCCCCCCCC
Q 005057 660 RDCIICLKDEVSIVF---LPCAHQVLCASCSDNYGKKGKATCPCCR 702 (716)
Q Consensus 660 ~~C~IC~~~~~~vvl---lpCgH~vfC~~C~~~~~~~r~~~CP~CR 702 (716)
..|-.|...+.+... -.|.+. ||.+|..-+ ......||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fi-He~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFV-HDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTT-TTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHH-HhhccCCcCCC
Confidence 469999887755442 357888 999996543 33356899983
No 232
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.50 E-value=4.4e+02 Score=24.33 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH
Q 005057 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL-QQCLARIQQDQKE 542 (716)
Q Consensus 464 ~~Le~e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~l-e~el~qakq~~~~ 542 (716)
..+..++..|+.+.+.++...........+...+.+.. +.....|+..+...+.....+ ++..+..+..
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~L-------e~~n~~L~~~lke~~~~~~~l~ek~~~e~~~l--- 94 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQAL-------EDQRKDLETKLKELQQDYDLAKESTSWDRQRL--- 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005057 543 TESKWRQEQKAKELLLAQVEEERRSKEGAEAGNKRKLEALRLKIEIDFQRHKDDLQRLEQEFS 605 (716)
Q Consensus 543 ~e~~~kqee~~keea~~~~e~er~erE~aE~~~k~k~e~~~~KaE~E~qr~k~~l~~LekELe 605 (716)
+.............+........+.+..+..............+.. .+..+.|..++.+++
T Consensus 95 -e~~L~e~~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A-s~~~~k~~~~e~~~~ 155 (155)
T 2oto_A 95 -EKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA-SQDYNRANVLEKELE 155 (155)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcC
No 233
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=23.50 E-value=81 Score=38.17 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=45.0
Q ss_pred cccCCccccccccccccceEEecCCCcccChhhHHHhcccCCCCCCCCCccccc
Q 005057 654 KETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNYGKKGKATCPCCRVPIEQ 707 (716)
Q Consensus 654 ~~~~~~~~C~IC~~~~~~vvllpCgH~vfC~~C~~~~~~~r~~~CP~CR~~i~~ 707 (716)
.+......|+|-.+-..+.|++|.||+.+=..++..|... ..+||+=|.++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 3445678999999999999999999755999999999876 5699999998864
No 234
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.25 E-value=2.8e+02 Score=26.09 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005057 513 AKLQEEIANEKEKIKELQQCLAR 535 (716)
Q Consensus 513 ~~LqeEl~~~k~KI~~le~el~q 535 (716)
..+..++...+..+.+++..++.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~ 91 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQ 91 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444444433
No 235
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.20 E-value=5.5e+02 Score=25.32 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHh
Q 005057 516 QEEIANEKEKIKELQQCL-ARIQQD 539 (716)
Q Consensus 516 qeEl~~~k~KI~~le~el-~qakq~ 539 (716)
-.=|++-|.||.++++.+ +++++.
T Consensus 181 ~~lLNeKK~KIR~lq~~Ll~~~~~~ 205 (213)
T 1ik9_A 181 ILVLNEKKTKIRSLHNKLLNAAQER 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344566677888888444 344444
No 236
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.70 E-value=3.6e+02 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 511 QKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 511 q~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
....|..|=..++.+|.+|..++..++..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555444
No 237
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.67 E-value=4.3e+02 Score=23.86 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 005057 412 TELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS 453 (716)
Q Consensus 412 ~Elk~LR~ekee~e~lkkekqeLEe~t~krLselE~el~k~~ 453 (716)
.||..||++.+..-..= |+..-.-.++.|.++.+++
T Consensus 39 ~ELeRLr~~~d~~~K~H------E~kklqLkse~e~E~ae~k 74 (115)
T 3vem_A 39 HELEKLRRESENSKKTF------EEKKSILKAELERKMAEVQ 74 (115)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 45566666666643332 2223334456666655444
No 238
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.63 E-value=3.5e+02 Score=22.86 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005057 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL 482 (716)
Q Consensus 441 rLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~ 482 (716)
.-..+|+.+..++..+|-+....-.|+.+...|..|+.-+|.
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335789999999999999999999999999999988876653
No 239
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.55 E-value=3.8e+02 Score=23.18 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 469 ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 469 e~a~lr~e~Ea~k~~a~e~~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
+...|+...-.+|-.. -++.|. ++.+.....+|.++..|+.+++..+..+..+.+++...++.
T Consensus 22 ev~~lKq~RRtlKNRg--yAq~CR------~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRG--YAQSCR------YKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444332 234444 45566677788888888888887777777777776665544
No 240
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.40 E-value=5.5e+02 Score=28.59 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----hH
Q 005057 413 ELKMLRMEREETQRLKKGKQT-LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA----ES 487 (716)
Q Consensus 413 Elk~LR~ekee~e~lkkekqe-LEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~----e~ 487 (716)
+++.+|..-+.+.+..+.+.. .......++.++..+...+. ..++.|+.+...+.+++-.++.... ..
T Consensus 42 D~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~-------~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~ 114 (501)
T 1wle_A 42 DMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLR-------EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQ 114 (501)
T ss_dssp CHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGG
T ss_pred CHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 488 VTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE 522 (716)
Q Consensus 488 ~~~~~e~~erekk~~k~l~~~Ekq~~~LqeEl~~~ 522 (716)
.....++.+..+....++..+|.+...+++++...
T Consensus 115 ~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 115 DPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 241
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.19 E-value=82 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.414 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhcCCChHHHHHhHhcCccccCCCchhhHHHHH
Q 005057 87 LYNEAISKLVALGYDEDVALKAILKNGHCYGGMDVLTNILHN 128 (716)
Q Consensus 87 ~Y~~Al~rLp~~~~~~~~a~~all~aG~CyG~lDPVSNII~N 128 (716)
.|.+.|.+|..+|++...+.+||..+ +|-.+...+.+.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~---~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRAS---YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTT---TSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 47889999999999999887888764 4555554444443
No 242
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.18 E-value=3.6e+02 Score=22.81 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005057 509 EKQKAKLQEEIANEKEKIKELQQC--LA-RIQQDQKETESKWRQEQKAKELLLAQ 560 (716)
Q Consensus 509 Ekq~~~LqeEl~~~k~KI~~le~e--l~-qakq~~~~~e~~~kqee~~keea~~~ 560 (716)
......++.+|...+..|..+... |. ++.....+...+|.+......+++..
T Consensus 24 ~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~ 78 (103)
T 4i0x_B 24 RGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQ 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457778888888888888888 76 56666667777777776555555444
No 243
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.00 E-value=1.9e+02 Score=24.14 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~ 483 (716)
.||.+||..+.=.-.-++.-|..+.+-..+++.|+.++..+..+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555444444555555555555555555555544433
No 244
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.74 E-value=2.7e+02 Score=27.98 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005057 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (716)
Q Consensus 440 krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~ 485 (716)
+++..++..|++++.+.+...+...+-++..+++|..++.+-++..
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 4566677777777777777777777777788888888876655443
No 245
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=94 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=26.8
Q ss_pred hhHHHHHHhhCCCCChhHHHHHHHHhcCchhhhhh
Q 005057 169 AGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASS 203 (716)
Q Consensus 169 ~gLVafL~~~~P~Ls~~dAm~~Ll~ad~dl~~A~~ 203 (716)
..||--+++.||+++....+|=|.... ++..-+.
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Tie 47 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTIT 47 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHH
Confidence 345667899999999999999997776 6655544
No 246
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.43 E-value=3.8e+02 Score=22.78 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005057 430 GKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (716)
Q Consensus 430 ekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea~k~~a~e 486 (716)
++|...++...--.-+-.+|.+.+...-......++.+.+|..|..+|+.++.+..+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 247
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=21.27 E-value=54 Score=35.42 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=32.0
Q ss_pred ccccccccccccceE-EecCCCcccChhhHHHh---cccCCCCCCCCCcccc
Q 005057 659 DRDCIICLKDEVSIV-FLPCAHQVLCASCSDNY---GKKGKATCPCCRVPIE 706 (716)
Q Consensus 659 ~~~C~IC~~~~~~vv-llpCgH~vfC~~C~~~~---~~~r~~~CP~CR~~i~ 706 (716)
...|++-+.+....+ ...|.|. -|++-..-+ ...+.-.||+|...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 468999888765544 5679998 677663222 1224568999998773
No 248
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.06 E-value=1.4e+02 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (716)
Q Consensus 501 ~~k~l~~~Ekq~~~LqeEl~~~k~KI~~le~el 533 (716)
+...+..+|.++..|..+-..+...|..|.+++
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555544
No 249
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.61 E-value=1.9e+02 Score=27.19 Aligned_cols=26 Identities=4% Similarity=0.056 Sum_probs=10.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005057 450 RKASGQVDRANAAVRRLETENAEIRA 475 (716)
Q Consensus 450 ~k~~~qle~a~~~~~~Le~e~a~lr~ 475 (716)
..++..++...+....++.+++.++.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~ 94 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSS 94 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 33333333333444444444443333
No 250
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.59 E-value=1.1e+03 Score=28.00 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 005057 436 DTTMKRLSEMENAL 449 (716)
Q Consensus 436 e~t~krLselE~el 449 (716)
|..|+.|.+++.+-
T Consensus 700 E~~r~~Llel~a~s 713 (861)
T 2zuo_A 700 EKARKELLELEAMS 713 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33566666666543
No 251
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.24 E-value=2.5e+02 Score=30.34 Aligned_cols=42 Identities=31% Similarity=0.335 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005057 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETESKWRQEQK 552 (716)
Q Consensus 511 q~~~LqeEl~~~k~KI~~le~el~qakq~~~~~e~~~kqee~ 552 (716)
++..+++++...++++..+++++++++...+++..+..+++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555444444444433
No 252
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.16 E-value=4.2e+02 Score=22.86 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005057 422 EETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (716)
Q Consensus 422 ee~e~lkkekqeLEe~t~krLselE~el~k~~~qle~a~~~~~~Le~e~a~lr~e~Ea 479 (716)
.....+......-.+.....|..+|.++..++.+.++....|+.|..-+-.|+.|+..
T Consensus 26 ~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 26 ERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 253
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.02 E-value=3.9e+02 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005057 510 KQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (716)
Q Consensus 510 kq~~~LqeEl~~~k~KI~~le~el~qakq~ 539 (716)
-|...|.++++...+.|..++++++.+++.
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555544433
Done!