Query 005058
Match_columns 716
No_of_seqs 331 out of 1004
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 14:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005058.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005058hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.7 1.6E-18 1.1E-22 140.7 6.9 59 462-520 3-61 (62)
2 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.7 1.9E-18 1.4E-22 143.9 7.0 62 462-523 2-63 (73)
3 d1k61a_ a.4.1.1 (A:) mat alpha 99.7 1.3E-17 9.7E-22 134.2 6.5 56 466-521 3-58 (60)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.5 1.4E-14 1E-18 119.7 7.0 60 460-521 6-65 (71)
5 d2craa1 a.4.1.1 (A:7-64) Homeo 99.5 3.9E-14 2.8E-18 113.5 7.0 58 461-521 1-58 (58)
6 d1bw5a_ a.4.1.1 (A:) Insulin g 99.4 5.6E-14 4.1E-18 114.9 7.1 61 460-523 2-62 (66)
7 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.4 5E-14 3.6E-18 112.2 6.6 57 462-521 1-57 (57)
8 d1le8a_ a.4.1.1 (A:) Mating ty 99.4 6.8E-14 4.9E-18 109.9 6.5 53 465-520 1-53 (53)
9 d1fjla_ a.4.1.1 (A:) Paired pr 99.4 8E-14 5.8E-18 113.6 7.0 58 462-522 3-60 (65)
10 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.4 8.4E-14 6.1E-18 111.0 6.6 57 462-521 1-57 (58)
11 d1au7a1 a.4.1.1 (A:103-160) Pi 99.4 1E-13 7.6E-18 110.6 6.9 56 463-521 1-56 (58)
12 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.4 9.7E-14 7.1E-18 115.9 6.7 57 463-522 5-61 (76)
13 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.4 8.4E-14 6.1E-18 114.2 5.9 58 461-521 1-58 (67)
14 d1p7ia_ a.4.1.1 (A:) Engrailed 99.4 1.3E-13 9.4E-18 108.2 6.6 53 463-518 1-53 (53)
15 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.4 8.9E-14 6.5E-18 114.2 5.8 59 461-522 8-66 (67)
16 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.4 3.7E-14 2.7E-18 113.7 3.1 57 462-521 2-58 (60)
17 d1pufa_ a.4.1.1 (A:) Homeobox 99.4 2.1E-13 1.5E-17 114.8 7.7 60 461-523 13-72 (77)
18 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.4 2.9E-13 2.1E-17 107.8 6.7 55 464-521 1-55 (57)
19 d1jgga_ a.4.1.1 (A:) Even-skip 99.4 2.9E-13 2.1E-17 107.6 6.5 56 463-521 1-56 (57)
20 d1ftta_ a.4.1.1 (A:) Thyroid t 99.4 2.8E-13 2.1E-17 111.4 6.5 58 462-522 3-60 (68)
21 d2cuea1 a.4.1.1 (A:7-74) Paire 99.4 3.4E-13 2.5E-17 110.8 6.9 61 461-524 1-61 (68)
22 d9anta_ a.4.1.1 (A:) Antennape 99.4 2.8E-13 2E-17 108.0 5.5 54 465-521 1-54 (56)
23 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.3 4.6E-13 3.3E-17 111.9 6.9 56 463-521 6-61 (76)
24 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.3 3.7E-13 2.7E-17 113.1 6.3 59 461-522 9-67 (77)
25 d1b72a_ a.4.1.1 (A:) Homeobox 99.3 3.7E-13 2.7E-17 115.8 5.0 60 460-522 26-85 (88)
26 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.3 1.5E-12 1.1E-16 108.4 6.5 58 462-521 2-59 (72)
27 d1s7ea1 a.4.1.1 (A:103-152) He 99.3 4.4E-13 3.2E-17 103.6 3.0 50 464-516 1-50 (50)
28 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.3 1.4E-12 1E-16 102.2 5.0 51 469-521 1-51 (52)
29 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.3 2.1E-12 1.5E-16 109.3 5.9 58 462-522 1-73 (82)
30 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.2 4E-12 2.9E-16 107.2 5.9 62 460-521 16-78 (80)
31 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.2 3.4E-12 2.5E-16 102.3 4.9 56 463-520 3-58 (59)
32 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.1 2.4E-11 1.8E-15 102.4 5.1 55 465-522 1-76 (78)
33 d1rp3a2 a.4.13.2 (A:164-234) S 69.1 0.97 7.1E-05 34.4 1.9 48 467-522 21-68 (71)
34 d1hlva1 a.4.1.7 (A:1-66) DNA-b 64.8 6.4 0.00046 31.0 6.0 47 464-516 4-50 (66)
35 d1or7a1 a.4.13.2 (A:120-187) S 59.7 1.9 0.00014 32.9 2.0 46 468-521 19-64 (68)
36 d1ijwc_ a.4.1.2 (C:) HIN recom 58.8 7.7 0.00056 28.5 5.2 41 465-513 3-43 (47)
37 d1bl0a1 a.4.1.8 (A:9-62) MarA 39.3 9.2 0.00067 27.5 2.8 40 471-514 3-42 (54)
38 d1iufa1 a.4.1.7 (A:-2-75) Ars- 35.2 29 0.0021 28.1 5.5 29 462-492 6-34 (78)
39 d1ku3a_ a.4.13.2 (A:) Sigma70 24.0 35 0.0025 25.8 3.9 50 467-520 8-57 (61)
40 d2jn6a1 a.4.1.19 (A:1-89) Unch 23.9 30 0.0022 27.2 3.7 44 465-514 3-46 (89)
41 d1b0na2 a.35.1.3 (A:1-68) SinR 21.5 25 0.0018 26.1 2.6 29 493-521 16-44 (68)
42 d1s7oa_ a.4.13.3 (A:) Hypothet 20.8 24 0.0017 29.5 2.5 46 468-521 17-62 (106)
43 d2a6ca1 a.35.1.13 (A:1-69) HTH 20.2 35 0.0026 25.5 3.2 32 493-524 21-52 (69)
No 1
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=1.6e-18 Score=140.74 Aligned_cols=59 Identities=46% Similarity=0.838 Sum_probs=55.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
+|+|..||++++.+|+.||.+|..||||+.+||.+||++|||+.+||.|||+|+|+|+.
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence 45556699999999999999999999999999999999999999999999999999975
No 2
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=1.9e-18 Score=143.87 Aligned_cols=62 Identities=37% Similarity=0.720 Sum_probs=58.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
+|+|+.|+++++.+|+.||.+|..||||+.++|.+||.+|||+++||++||+|+|+|.|+..
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~ 63 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccc
Confidence 56777899999999999999999999999999999999999999999999999999998755
No 3
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.68 E-value=1.3e-17 Score=134.22 Aligned_cols=56 Identities=27% Similarity=0.492 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
++|+++++++|+.||.+|..||||++++|.+||++|||+++||.+||+|+|+|.|+
T Consensus 3 ~Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhcccccc
Confidence 45999999999999999999999999999999999999999999999999999864
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.4e-14 Score=119.70 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|+.|+++++.+|+.||.+. +|||+.+++..||+++||++.||.+||+|+|+|.|+
T Consensus 6 ~~~r~R~~~t~~Q~~~Le~~F~~~--~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk 65 (71)
T d1wi3a_ 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhcc
Confidence 456777889999999999999753 799999999999999999999999999999999876
No 5
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=3.9e-14 Score=113.51 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
++|+|..|+++++.+|+..|.. +|||+.+++.+||..+||++.||.+||+|+|.|.||
T Consensus 1 Grr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 1 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 3567777999999999999999 799999999999999999999999999999999875
No 6
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.44 E-value=5.6e-14 Score=114.94 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=56.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005058 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.++|+|..|+++++.+|+.+|.. +|||+.+++..||.++||++.||.+||+|+|.|.|+..
T Consensus 2 k~kR~Rt~~t~~Q~~~Le~~F~~---n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~ 62 (66)
T d1bw5a_ 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCcCcCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHH
Confidence 35677778999999999999998 79999999999999999999999999999999998743
No 7
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.44 E-value=5e-14 Score=112.17 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
|++|+.|+++++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|.|.||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~---n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 466778999999999999998 799999999999999999999999999999999865
No 8
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.43 E-value=6.8e-14 Score=109.90 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=50.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005058 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
|..|+++++.+|+.+|.. +|||+.+++..||+.+||++.||.+||+|+|.|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 456999999999999998 79999999999999999999999999999999975
No 9
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.43 E-value=8e-14 Score=113.61 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=53.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+|+|..|+++++.+|+.+|.+ +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~ 60 (65)
T d1fjla_ 3 RRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60 (65)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhc
Confidence 455666999999999999999 7999999999999999999999999999999998763
No 10
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.42 E-value=8.4e-14 Score=110.98 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+|+|..|+++++.+|+.-|.+ +|||+.+++.+||..+||+++||.+||+|+|.|.||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 466777999999999999999 799999999999999999999999999999999875
No 11
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.42 E-value=1e-13 Score=110.64 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=52.8
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
|+|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr 56 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHh
Confidence 45667999999999999998 799999999999999999999999999999999876
No 12
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.41 E-value=9.7e-14 Score=115.92 Aligned_cols=57 Identities=19% Similarity=0.433 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+++++++++++.+|+.||.. +|||+.+++..||..|||++.||.+||+|+|+|.|+.
T Consensus 5 s~~~r~T~eQ~~~Le~~F~~---n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~ 61 (76)
T d2ecca1 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 45567999999999999998 7999999999999999999999999999999998763
No 13
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.41 E-value=8.4e-14 Score=114.20 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
|+|+|..|+.+++.+|+..|.+ +|||+..++.+||..+||++.||.+||+|+|.|.|+
T Consensus 1 Prr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk 58 (67)
T d1zq3p1 1 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 58 (67)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhh
Confidence 4677778999999999999998 799999999999999999999999999999999876
No 14
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.41 E-value=1.3e-13 Score=108.19 Aligned_cols=53 Identities=26% Similarity=0.545 Sum_probs=50.4
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhh
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 518 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrR 518 (716)
|+|+.|+++++.+|+..|.. +|||+.+++.+||+.+||++.||.+||+|+|.|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 56778999999999999999 799999999999999999999999999999986
No 15
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.40 E-value=8.9e-14 Score=114.21 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=54.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.+|+|..|+++++.+|+.+|.. +|||+.+++.+||..+||++.||.+||+|+|.|.||.
T Consensus 8 ~rr~Rt~~t~~q~~~Le~~F~~---n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 8 RKRKRTSIENRVRWSLETMFLK---CPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp SSSCCSSCCHHHHHHHHHHHSS---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcC
Confidence 3455666999999999999987 8999999999999999999999999999999998873
No 16
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.40 E-value=3.7e-14 Score=113.73 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+|+|+.|+++++.+|+.+|.+ +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 58 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHh
Confidence 466777999999999999998 799999999999999999999999999999999876
No 17
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.40 E-value=2.1e-13 Score=114.75 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhh
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 523 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpm 523 (716)
.+|+|+.|+++++.+|+.+|.+ +|||+..++.+||..+||++.||.+||+|+|.|.|+..
T Consensus 13 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~ 72 (77)
T d1pufa_ 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHH
Confidence 4556667999999999999999 79999999999999999999999999999999998743
No 18
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=2.9e-13 Score=107.81 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=51.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+|+.|+++++.+|+.+|.. +|||+.+++..||.++||++.||.+||+|+|.|.|+
T Consensus 1 kRT~~~~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk 55 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHc
Confidence 3566999999999999998 799999999999999999999999999999999886
No 19
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.37 E-value=2.9e-13 Score=107.64 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
|+|..|+++++.+|+.-|.. +|||+..++.+||..+||++.||.+||+|+|.|.||
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhc
Confidence 56677999999999999999 799999999999999999999999999999999876
No 20
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.37 E-value=2.8e-13 Score=111.39 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=54.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
+|+|..|++.++.+|++.|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~ 60 (68)
T d1ftta_ 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhc
Confidence 456667999999999999999 7999999999999999999999999999999998764
No 21
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.36 E-value=3.4e-13 Score=110.83 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=56.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
++|+|+.|+++++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 1 grR~Rt~ft~~Ql~~Le~~F~~---n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~ 61 (68)
T d2cuea1 1 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61 (68)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhhh
Confidence 3677778999999999999999 799999999999999999999999999999999987543
No 22
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.35 E-value=2.8e-13 Score=108.02 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
|+.|+++++.+|+.+|.. +|||+..++.+||+.+||++.||.+||+|+|.|.||
T Consensus 1 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk 54 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54 (56)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhh
Confidence 356999999999999998 799999999999999999999999999999999876
No 23
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.35 E-value=4.6e-13 Score=111.89 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=51.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
++++.++++++.+|+.+|.. +|||+.++++.||+.+||++.||.+||+|+|+|.++
T Consensus 6 ~k~k~~T~~Q~~~Le~~F~~---~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~ 61 (76)
T d2ecba1 6 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHH
Confidence 34455799999999999999 799999999999999999999999999999988755
No 24
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.35 E-value=3.7e-13 Score=113.07 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=53.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 461 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 461 ~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
++|+|..|+++++.+|+..|.+ +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 67 (77)
T d1vnda_ 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp SCSSCCCCCTTHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHH
Confidence 3455556999999999999999 7999999999999999999999999999999998763
No 25
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=3.7e-13 Score=115.79 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 460 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.++|+|..|+.+++.+|+.+|.. +|||+.+++.+||..+||+..||.+||+|+|.|.|+.
T Consensus 26 ~~kr~Rt~ft~~Ql~~Le~~F~~---n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~ 85 (88)
T d1b72a_ 26 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 85 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHh
Confidence 34566777999999999999998 7999999999999999999999999999999999874
No 26
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.29 E-value=1.5e-12 Score=108.44 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+|++..|+++++.+|+.-|... ++||+..++++||+.+||++.||.+||+|+|.|.++
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~~--n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk 59 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS--CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc--cccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999752 699999999999999999999999999999999865
No 27
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.29 E-value=4.4e-13 Score=103.63 Aligned_cols=50 Identities=34% Similarity=0.433 Sum_probs=47.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhh
Q 005058 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaR 516 (716)
||..|+++++.+|+.+|.. +|||+.+++..||+++||+.+||.+||+|+|
T Consensus 1 PRt~ft~~Q~~~Le~~F~~---n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTS---SCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 5778999999999999987 7999999999999999999999999999998
No 28
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.27 E-value=1.4e-12 Score=102.24 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 469 PERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 469 pk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
+.++..+|+.+|.++ +|||+.+++..||+++||+..||.+||+|+|.|.|+
T Consensus 1 T~~q~~iLE~~F~~~--~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 357899999999874 799999999999999999999999999999999875
No 29
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.26 E-value=2.1e-12 Score=109.34 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=53.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhhhhhchhhhhhhchh
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------LSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTG---------------LS~~QVsNWFiNaRrRlkKp 522 (716)
+|+|..|+++++.+|+.+|.+ +|||+..+|++||+.+| |+..+|.+||+|+|.|.|+.
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~---n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~ 73 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 73 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHh
Confidence 356677999999999999999 79999999999999885 99999999999999999874
No 30
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.22 E-value=4e-12 Score=107.22 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=54.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHcc-CCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 460 HPWRPQRGLPERSVSVLRAWLFEHF-LHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 460 ~~kRkrR~fpk~qv~iLr~Wf~eH~-~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
.++|+|..|+.+++..|+..|.+.. .+|||+.+++++||+++||++.||.+||+|+|.+.|+
T Consensus 16 ~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 3456666799999999999888654 4899999999999999999999999999999998764
No 31
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.22 E-value=3.4e-12 Score=102.33 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005058 463 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 463 RkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
|.+..+..++..+|+.+|..+ +|||+..++.+||+++||++.||.+||+|+|.+.|
T Consensus 3 k~~~~~k~~~~~iLE~~F~~~--~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 3 KDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCccccHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence 345568888889999999864 79999999999999999999999999999999975
No 32
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.10 E-value=2.4e-11 Score=102.40 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhchhhhhhhchh
Q 005058 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTG---------------------LS~~QVsNWFiNaRrRlkKp 522 (716)
|..|++.++.+|+++|.+ +|||+..+|+.||++++ ||+.+|.|||+|+|+|.|+.
T Consensus 1 R~~~tp~Ql~~Le~~F~~---n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~ 76 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76 (78)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence 356999999999999999 79999999999999994 89999999999999998864
No 33
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=69.15 E-value=0.97 Score=34.40 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchh
Q 005058 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 522 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKp 522 (716)
.||++.+.++.-.|++. -.-.++|+.+|+|+..|.+....+|+++++-
T Consensus 21 ~L~~~~r~v~~l~~~~~--------~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 21 KLPEREKLVIQLIFYEE--------LPAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp TSCHHHHHHHHHHHTSC--------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHh--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 48999999998888763 2567899999999999999999999998764
No 34
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.84 E-value=6.4 Score=31.04 Aligned_cols=47 Identities=28% Similarity=0.236 Sum_probs=33.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhh
Q 005058 464 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 516 (716)
Q Consensus 464 krR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaR 516 (716)
+|+.|+-+.+.-+-..+.+ +|-.+ +.++|+..|+.+..|++|..|+.
T Consensus 4 kRk~LT~~eK~~ii~~~e~---g~k~s---q~eIA~~fGv~~STvs~IlKnK~ 50 (66)
T d1hlva1 4 KRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKR 50 (66)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHH
T ss_pred ccccCCHHHHHHHHHHHHc---CCcch---HHHHHHHhCCChhHHHHHHHHHH
Confidence 3456887775555555555 34322 56799999999999999999954
No 35
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=59.70 E-value=1.9 Score=32.86 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
||++.+.++.-++++. + .-.++|+..|++..-|.++...+|+++++
T Consensus 19 Lp~~~r~v~~l~~~~~----~----s~~eIA~~lgis~~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 19 LPEDLRMAITLRELDG----L----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 64 (68)
T ss_dssp SCHHHHHHHHHHHTTC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8999999999888873 2 24689999999999999999999999865
No 36
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=58.79 E-value=7.7 Score=28.50 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhch
Q 005058 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFI 513 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFi 513 (716)
++.|+++++...+..+.. .. .+.++|+..|+++.-|-.||.
T Consensus 3 ~~~lt~~q~~~a~~l~~~----G~----s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CCSSCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHSC
T ss_pred CCcCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHhhCC
Confidence 356999999999999976 33 388999999999999999984
No 37
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=39.26 E-value=9.2 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchh
Q 005058 471 RSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 514 (716)
Q Consensus 471 ~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiN 514 (716)
..+..+..|..+|+..|- .-.+||+..|+++..+..+|..
T Consensus 3 ~~i~~v~~yI~~~~~~~~----tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 3 ITIHSILDWIEDNLESPL----SLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHHHHTTTTSCC----CCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 356678899999877773 4567999999999999999964
No 38
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=35.23 E-value=29 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHH
Q 005058 462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDV 492 (716)
Q Consensus 462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~ 492 (716)
+.+|+.++-+++..||+|+.+. +|.|+-.
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~~~--~~~~sqk 34 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFFQL--QNRSGQQ 34 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS--SSCCCHH
T ss_pred ccccccCCHHHHHHHHHHHHhc--CCCccHH
Confidence 3445569999999999998663 7876643
No 39
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=24.01 E-value=35 Score=25.83 Aligned_cols=50 Identities=18% Similarity=0.016 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005058 467 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 520 (716)
Q Consensus 467 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk 520 (716)
.|+++.+.+|..+|--+-..|+ .-.++|+..|+|+..|..=-..+=+|++
T Consensus 8 ~L~~rer~Ii~~ryGl~~~~~~----tl~eIa~~lgiS~erVrqi~~~al~kLR 57 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLK 57 (61)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 4899999999999854322343 6788999999999999654444444443
No 40
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.86 E-value=30 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchh
Q 005058 465 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 514 (716)
Q Consensus 465 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiN 514 (716)
|+.|+++-+.-.-.-+.++- .+ ...++|+..|++...|.+|..-
T Consensus 3 rk~Ys~EfK~~aV~l~~~~~--g~----s~~~vA~~lGIs~~tl~~W~k~ 46 (89)
T d2jn6a1 3 TKTYSEEFKRDAVALYENSD--GA----SLQQIANDLGINRVTLKNWIIK 46 (89)
T ss_dssp CCCCCHHHHHHHHHHHTTGG--GS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC--CC----cHHHHHHHHCCCHHHHHHHHHH
Confidence 45688876554433332210 12 3567999999999999999543
No 41
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.54 E-value=25 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 493 DKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 493 EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
...+||+.+|+++..|+.|-.+.|....-
T Consensus 16 tq~~la~~~gis~~~i~~~E~g~~~~ps~ 44 (68)
T d1b0na2 16 SLSELAEKAGVAKSYLSSIERNLQTNPSI 44 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSCCCH
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCCCCCH
Confidence 35678888899999999998887654433
No 42
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=20.82 E-value=24 Score=29.53 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhch
Q 005058 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 521 (716)
Q Consensus 468 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkK 521 (716)
||++++.++.-+|++. + .-.++|..+|+|+.-|..=...+|.++++
T Consensus 17 Lp~~qR~v~~L~y~~~----l----s~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 17 LTDKQMNYIELYYADD----Y----SLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp SCHHHHHHHHHHHHTC----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8999999999988873 2 34689999999999999999999999865
No 43
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=20.23 E-value=35 Score=25.53 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCChhhhhhhchhhhhhhchhhH
Q 005058 493 DKHILARQTGLSRSQVSNWFINARVRLWKPMV 524 (716)
Q Consensus 493 EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmi 524 (716)
...+||+.+|+++..|+.|..++-.+..-..+
T Consensus 21 tq~elA~~~gv~~~~is~ie~g~~~~~s~~~L 52 (69)
T d2a6ca1 21 TQFKAAELLGVTQPRVSDLMRGKIDLFSLESL 52 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHH
T ss_pred CHHHHHHHHHcCHhHHHHHHcccccchhHHHH
Confidence 35689999999999999999876555544333
Done!