BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005059
         (716 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y758|CP52M_DEBHN Cytochrome P450 52A13 OS=Debaryomyces hansenii GN=CYP52A13 PE=2
           SV=1
          Length = 519

 Score = 36.2 bits (82), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 4   VESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGE------CSN 57
           V SL D  + DPP EDF         F TA+ +  +    Y ++  FI+        C  
Sbjct: 206 VYSLKDAAINDPPTEDFDGRSSFANSFNTAQTY--LGTRAYLQMFYFIVNNSDFRKCCKQ 263

Query: 58  VECPTRFHIERGRKRSRGSLKEYKDDEYL 86
           V   TRF++++G   +   L++  ++ Y+
Sbjct: 264 VHDFTRFYVQKGLDMTPEELEKKSENGYV 292


>sp|A2QCV4|NCB5R_ASPNC NADH-cytochrome b5 reductase 1 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=cbr1 PE=3 SV=1
          Length = 305

 Score = 34.7 bits (78), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 593 NICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHN----M 648
           N+C+H+    MI A   G  P   +Q ++ ++ N      +D+ ++DL  A  +     M
Sbjct: 163 NMCRHI---GMI-AGGTGITPM--YQIIKAIIRNRPRNGGNDTTQVDLIFANVNPDDILM 216

Query: 649 LDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSS 696
            D+++QL +      I  V+NN P  W    G  +  +    L  PSS
Sbjct: 217 KDELEQLAKEDDGFRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPSS 264


>sp|A4SSY1|RPOA_AERS4 DNA-directed RNA polymerase subunit alpha OS=Aeromonas salmonicida
           (strain A449) GN=rpoA PE=3 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 2   DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTA-------EHHDEVALIPYARVDSFIIGE 54
           DI+E L +++      E    + L+ TK GT         H DEV ++    V   + G 
Sbjct: 77  DILEILLNLKGIAVKLEGKDEVTLSLTKSGTGPVTAGDITHGDEVEIVNPEHVICHLTG- 135

Query: 55  CSNVECPTRFHIERGRKRSRGSLKEYKDDE 84
            +N E   R  ++RGR     S + + DDE
Sbjct: 136 -ANAEISMRLKVQRGRGYVPASARVHNDDE 164


>sp|A0KF45|RPOA_AERHH DNA-directed RNA polymerase subunit alpha OS=Aeromonas hydrophila
           subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpoA
           PE=3 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 2   DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTA-------EHHDEVALIPYARVDSFIIGE 54
           DI+E L +++      E    + L+ TK GT         H DEV ++    V   + G 
Sbjct: 77  DILEILLNLKGIAVKLEGKDEVTLSLTKSGTGPVTAGDITHGDEVEIVNPEHVICHLTG- 135

Query: 55  CSNVECPTRFHIERGRKRSRGSLKEYKDDE 84
            +N E   R  ++RGR     S + + DDE
Sbjct: 136 -ANAEISMRLKVQRGRGYVPASARVHNDDE 164


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,631,203
Number of Sequences: 539616
Number of extensions: 10862717
Number of successful extensions: 23245
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23243
Number of HSP's gapped (non-prelim): 7
length of query: 716
length of database: 191,569,459
effective HSP length: 125
effective length of query: 591
effective length of database: 124,117,459
effective search space: 73353418269
effective search space used: 73353418269
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)