Query 005059
Match_columns 716
No_of_seqs 242 out of 406
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03097 FHY3 Protein FAR-RED 100.0 3.4E-47 7.4E-52 445.2 39.0 484 67-609 69-607 (846)
2 PF10551 MULE: MULE transposas 99.7 1.4E-17 3.1E-22 147.0 8.6 89 299-393 1-93 (93)
3 PF00872 Transposase_mut: Tran 99.2 1.3E-12 2.9E-17 144.5 1.2 244 180-487 98-351 (381)
4 COG3328 Transposase and inacti 97.9 6.9E-05 1.5E-09 82.7 11.8 176 294-486 147-329 (379)
5 PF03101 FAR1: FAR1 DNA-bindin 97.4 0.00029 6.2E-09 61.9 5.9 72 74-156 16-87 (91)
6 smart00575 ZnF_PMZ plant mutat 96.5 0.0016 3.4E-08 44.9 1.8 24 583-606 2-26 (28)
7 PF15299 ALS2CR8: Amyotrophic 96.3 0.056 1.2E-06 56.0 12.7 59 178-236 155-221 (225)
8 PF04434 SWIM: SWIM zinc finge 96.2 0.0044 9.5E-08 46.1 3.0 27 578-604 11-38 (40)
9 PF01610 DDE_Tnp_ISL3: Transpo 94.8 0.055 1.2E-06 56.3 6.3 91 295-394 1-94 (249)
10 PF13610 DDE_Tnp_IS240: DDE do 86.4 0.24 5.1E-06 47.3 0.3 78 294-380 3-81 (140)
11 PF00665 rve: Integrase core d 85.9 4.2 9.1E-05 36.6 8.3 75 293-372 7-82 (120)
12 PF08731 AFT: Transcription fa 85.7 2.4 5.2E-05 38.9 6.3 35 121-156 73-109 (111)
13 PF03050 DDE_Tnp_IS66: Transpo 83.4 1.5 3.2E-05 46.4 4.7 81 294-396 69-154 (271)
14 PF06782 UPF0236: Uncharacteri 82.2 1E+02 0.0022 35.5 22.9 115 360-490 261-382 (470)
15 PF04937 DUF659: Protein of un 73.7 33 0.00072 33.4 10.4 107 283-397 26-137 (153)
16 PRK14702 insertion element IS2 66.9 26 0.00056 37.1 8.7 76 293-369 88-164 (262)
17 COG4715 Uncharacterized conser 66.0 7.5 0.00016 44.9 4.6 45 559-606 51-96 (587)
18 COG4279 Uncharacterized conser 61.6 4.1 8.9E-05 42.4 1.4 23 582-606 125-147 (266)
19 PF03106 WRKY: WRKY DNA -bindi 58.0 38 0.00082 27.7 6.1 29 127-156 30-58 (60)
20 PRK09409 IS2 transposase TnpB; 56.8 49 0.0011 35.8 8.7 75 293-369 127-203 (301)
21 COG3464 Transposase and inacti 56.7 80 0.0017 35.7 10.7 54 329-390 184-238 (402)
22 COG3316 Transposase and inacti 51.6 57 0.0012 33.6 7.6 92 294-395 72-173 (215)
23 PF13936 HTH_38: Helix-turn-he 46.6 11 0.00024 28.5 1.3 26 179-204 3-28 (44)
24 PHA02517 putative transposase 44.3 52 0.0011 34.7 6.4 71 294-370 112-182 (277)
25 COG5431 Uncharacterized metal- 31.5 21 0.00045 32.4 0.7 21 581-601 49-75 (117)
26 PF02796 HTH_7: Helix-turn-hel 30.6 81 0.0018 23.8 3.8 25 180-204 5-29 (45)
27 KOG3223 Uncharacterized conser 29.6 38 0.00083 34.0 2.3 27 611-637 186-212 (221)
28 KOG0053 Cystathionine beta-lya 28.6 4.6E+02 0.0099 29.8 10.7 104 224-332 129-239 (409)
29 TIGR03147 cyt_nit_nrfF cytochr 28.3 63 0.0014 30.5 3.4 32 181-215 58-89 (126)
30 PF08259 Periviscerokin: Periv 27.3 23 0.00051 19.1 0.2 8 40-47 4-11 (11)
31 PRK10144 formate-dependent nit 24.1 84 0.0018 29.7 3.4 32 181-215 58-89 (126)
32 PF03918 CcmH: Cytochrome C bi 22.7 72 0.0016 30.9 2.8 32 181-215 58-89 (148)
No 1
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=100.00 E-value=3.4e-47 Score=445.15 Aligned_cols=484 Identities=14% Similarity=0.196 Sum_probs=342.1
Q ss_pred cccccCCCCCCccccccceeEEEEEEeeeCCCcc------CCCCccccccc---cccc---------------------c
Q 005059 67 ERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENY------GEGGGVLPSRK---YRLN---------------------T 116 (716)
Q Consensus 67 ~~~~~~~~g~~~~~~~d~~l~~~~Y~Cs~g~~~y------~~~g~~~psr~---~~~~---------------------~ 116 (716)
...-.|-+||.|++.++++-||+.|+..-|+..= .+.++..-+++ .+.| +
T Consensus 69 ~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~ 148 (846)
T PLN03097 69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPE 148 (846)
T ss_pred CCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcc
Confidence 3445799999999999999999988888887641 01000000000 0000 0
Q ss_pred CcCCCCCCCccCceeEEEEEEeecCCcEEEEEEecccCCCCCCCccCCCCCcCcCCCCCCcCCCCCHHHHHHHHHHHHcC
Q 005059 117 RNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLG 196 (716)
Q Consensus 117 ~~r~~R~~~k~gC~c~f~Vk~~~~~~~~~v~i~~~~~H~~~~~~~~H~p~~~~a~g~~~~~~~~Is~e~r~~I~~ll~~G 196 (716)
..+.+|..+++||+|++.|++. .++.|.|.-+. .+|+|. ..+ +. .++...+
T Consensus 149 ~~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv-~eHNH~-------L~p-----~~-----~~~~~~r---------- 199 (846)
T PLN03097 149 NGTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFV-KEHNHE-------LLP-----AQ-----AVSEQTR---------- 199 (846)
T ss_pred cccccccccCCCCceEEEEEEc-CCCeEEEEEEe-cCCCCC-------CCC-----cc-----ccchhhh----------
Confidence 0112345678999999999984 46778887777 567653 211 01 1222222
Q ss_pred CChHHHHHHHHHHhhhhcCCCCcCCCCcHHHHHHHHHHhhhccccCCcchHHHHHHHHHhc--CCeeeEecCCCCCCCeE
Q 005059 197 IPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRN--KKSIFFYQDSSETDPFI 274 (716)
Q Consensus 197 i~~~~Il~~ire~~~k~~g~~~r~~llT~kDV~Ni~~~~~r~~~~l~~nD~~Sv~~wv~~~--~~~vffy~d~~d~~~f~ 274 (716)
.|+..+...+ ++ .... ..+..|.+|.....++ ..+..+|+..+..++.++ ++|.|||.-..|+++-+
T Consensus 200 ----~~~~~~~~~~---~~-~~~v-~~~~~d~~~~~~~~r~--~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l 268 (846)
T PLN03097 200 ----KMYAAMARQF---AE-YKNV-VGLKNDSKSSFDKGRN--LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRL 268 (846)
T ss_pred ----hhHHHHHhhh---hc-cccc-cccchhhcchhhHHHh--hhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCe
Confidence 2222111111 11 1111 2345677776555442 255678999999998888 48999998666655555
Q ss_pred E-EccCHH-HHHHHHHhCCceEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhccc
Q 005059 275 L-GIQTEW-QLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSI 352 (716)
Q Consensus 275 l-~iqt~~-q~~~l~~fg~~~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~ 352 (716)
. +|+.+. .+..+..||+ ||++|+||.||+|++||..++|+|+||+.+++|++|+.+|+.++|.|+|++|+..|+++
T Consensus 269 ~niFWaD~~sr~~Y~~FGD--vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk 346 (846)
T PLN03097 269 KNLFWVDAKSRHDYGNFSD--VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQ 346 (846)
T ss_pred eeEEeccHHHHHHHHhcCC--EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCC
Confidence 4 455555 4567888998 99999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCcceEEEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHH
Q 005059 353 EPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLE 431 (716)
Q Consensus 353 ~p~~~P~~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le 431 (716)
.|++|+||.|.|+.+||.+|||++ |.+|.|||+++..+++...+. ....+...|..+++...++++|+..|.
T Consensus 347 ----~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~---~~~~f~~~f~~cv~~s~t~eEFE~~W~ 419 (846)
T PLN03097 347 ----APKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK---QHENFMAKFEKCIYRSWTEEEFGKRWW 419 (846)
T ss_pred ----CCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh---hhhHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 699999999999999999999996 999999999988887754322 234567778888998888888888898
Q ss_pred HHHHHhhhhhHHHHHHHhhhhhhHHhHHHhh-hcCCCCCCCCCcHHHHhHHHHhhhhcCCCCc-hhhccHHHHHHHHh-h
Q 005059 432 VLIQDFVDQTAFIEYFKASWMPKLAMWLSTM-RALPLASQEASGAIEAYHVKLKTKLFDDSHL-GALQRVDWLVHKLT-T 508 (716)
Q Consensus 432 ~~~~~f~~~~~F~~Yf~~~Wl~~~~~Wa~~~-R~~~~~~~~TNn~iEs~h~~LK~~ll~~~~~-~~~~RvD~Lv~~L~-~ 508 (716)
+++++|.-... +|+...| ..+++||.+| +..+.+++.||++.||+|+.||.++-....+ .|..++|.++.... +
T Consensus 420 ~mi~ky~L~~n--~WL~~LY-~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ek 496 (846)
T PLN03097 420 KILDRFELKED--EWMQSLY-EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEE 496 (846)
T ss_pred HHHHhhccccc--HHHHHHH-HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Confidence 88888853211 4666677 5579999998 5577899999999999999999866555544 47888999888642 3
Q ss_pred hhhhchh-------------hh-ccc--ccchhHHhhHHHhhhccchhhhhccCCceeeecCCCcceEEEeeccCCceEE
Q 005059 509 ELHSSYW-------------LD-RYA--DESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTH 572 (716)
Q Consensus 509 ev~s~~~-------------l~-~~~--~~~~~~~~~r~e~~~~~s~~~a~~I~~~~v~i~~~n~~~~~V~Sq~~~~~~~ 572 (716)
|....|. +. +.+ -+..+|+.||+|...+.+....... ++.....|.|........+.
T Consensus 497 E~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~-------~dg~~~~y~V~~~~~~~~~~ 569 (846)
T PLN03097 497 EAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMES-------QDETSITFRVQDFEKNQDFT 569 (846)
T ss_pred HHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeec-------cCCceEEEEEEEecCCCcEE
Confidence 3332221 10 111 1467788999999865431111000 11122247777655555677
Q ss_pred EEecCCCceeeecccCC-CCCccchhhHHHhhhhcccC
Q 005059 573 LVWNPGSEFAFCDCAWS-MQGNICKHVVKVNMICANNE 609 (716)
Q Consensus 573 vv~n~~~~~~~C~C~~~-~~G~lCkHil~V~~~~~~~~ 609 (716)
|+||...+...|+|..| +.|+||+|+|+|+.+.....
T Consensus 570 V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~ 607 (846)
T PLN03097 570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSA 607 (846)
T ss_pred EEEecCCCeEEeeccCeecCccchhhHHHHHhhcCccc
Confidence 77999999999999988 99999999999999886544
No 2
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=99.72 E-value=1.4e-17 Score=147.04 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=81.6
Q ss_pred ccccccccCCceEE---EEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhhHHH
Q 005059 299 STFGIKRLKYPLCT---LLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIRE 375 (716)
Q Consensus 299 sT~~tN~~~~pL~t---l~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nAI~~ 375 (716)
+||+||+| .||++ +++.|+.|+++|+||+++++|+.+++.|+|+.+++.+.. . |.+||+|.+.++++||++
T Consensus 1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~----~-p~~ii~D~~~~~~~Ai~~ 74 (93)
T PF10551_consen 1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ----K-PKVIISDFDKALINAIKE 74 (93)
T ss_pred Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc----C-ceeeeccccHHHHHHHHH
Confidence 69999999 77775 999999999999999999999999999999988877653 4 999999999999999999
Q ss_pred hcCCC-cccchHHHHHHHH
Q 005059 376 IFCCP-LLFSLWRVRRSWL 393 (716)
Q Consensus 376 VFp~~-~LLC~wHV~qaw~ 393 (716)
+||+. +++|.||+.|+|+
T Consensus 75 vfP~~~~~~C~~H~~~n~k 93 (93)
T PF10551_consen 75 VFPDARHQLCLFHILRNIK 93 (93)
T ss_pred HCCCceEehhHHHHHHhhC
Confidence 99996 9999999999763
No 3
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=99.25 E-value=1.3e-12 Score=144.52 Aligned_cols=244 Identities=16% Similarity=0.250 Sum_probs=170.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhcCCCCcCCCCcHHHHHHHHHHhhhccccCCcchHHHHHHHHHhcCC
Q 005059 180 YICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKK 259 (716)
Q Consensus 180 ~Is~e~r~~I~~ll~~Gi~~~~Il~~ire~~~k~~g~~~r~~llT~kDV~Ni~~~~~r~~~~l~~nD~~Sv~~wv~~~~~ 259 (716)
+.+++.-+.|.+|-..|+|..+|-..+ +..+|+. -+...-|.++...+. ..+..|-.+-
T Consensus 98 r~~~~l~~~i~~ly~~G~Str~i~~~l----~~l~g~~----~~S~s~vSri~~~~~-----------~~~~~w~~R~-- 156 (381)
T PF00872_consen 98 RREDSLEELIISLYLKGVSTRDIEEAL----EELYGEV----AVSKSTVSRITKQLD-----------EEVEAWRNRP-- 156 (381)
T ss_pred hhhhhhhhhhhhhhccccccccccchh----hhhhccc----ccCchhhhhhhhhhh-----------hhHHHHhhhc--
Confidence 356788889999999999998885433 2224421 145555666554333 2334443321
Q ss_pred eeeEecCCCCCCCeEEEccCHHHHHHHHHhCCceEEEEeccccccc-----cCCceEEEEEEcCCCCeEEEEEEEecCCC
Q 005059 260 SIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKR-----LKYPLCTLLVFDSRQHALPVAWVVTRSSA 334 (716)
Q Consensus 260 ~vffy~d~~d~~~f~l~iqt~~q~~~l~~fg~~~vi~~DsT~~tN~-----~~~pL~tl~v~d~~g~g~Pva~~i~~~et 334 (716)
+++.+ | . +|++|+||-.-+ -+-.+++++|+|..|+-.++|+.+...|+
T Consensus 157 --------L~~~~----------------y-~--~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es 209 (381)
T PF00872_consen 157 --------LESEP----------------Y-P--YLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRES 209 (381)
T ss_pred --------ccccc----------------c-c--ceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCc
Confidence 11111 1 1 689999986433 34689999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005059 335 KPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRL 413 (716)
Q Consensus 335 ~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L 413 (716)
...+..+|..|.++= . -.|..|++|.......||+++||.. ++.|.+|..++..+++. ...+.++...|
T Consensus 210 ~~~W~~~l~~L~~RG--l---~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~-----~k~~~~v~~~L 279 (381)
T PF00872_consen 210 AASWREFLQDLKERG--L---KDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVP-----KKDRKEVKADL 279 (381)
T ss_pred cCEeeecchhhhhcc--c---cccceeeccccccccccccccccchhhhhheechhhhhccccc-----cccchhhhhhc
Confidence 998877777665431 1 2488999999999999999999985 99999999985544442 23456677778
Q ss_pred HHHHhhhcCCCCcHHHHHHHHHHhhh-hhHHHHHHHhhhhhhHHhHHHhhhcCCC---CCCCCCcHHHHhHHHHhhhh
Q 005059 414 GNILYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKASWMPKLAMWLSTMRALPL---ASQEASGAIEAYHVKLKTKL 487 (716)
Q Consensus 414 ~~lv~~~~~~~~~~~~le~~~~~f~~-~~~F~~Yf~~~Wl~~~~~Wa~~~R~~~~---~~~~TNn~iEs~h~~LK~~l 487 (716)
+.+.+.. +.++....+++|.+.|.+ .|.++++++..|... |+ ++. +|- ..+.|||.+|++|+.||+..
T Consensus 280 k~I~~a~-~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~---~t-f~~-fP~~~~~~i~TTN~iEsln~~irrr~ 351 (381)
T PF00872_consen 280 KAIYQAP-DKEEAREALEEFAEKWEKKYPKAAKSLEENWDEL---LT-FLD-FPPEHRRSIRTTNAIESLNKEIRRRT 351 (381)
T ss_pred ccccccc-ccchhhhhhhhcccccccccchhhhhhhhccccc---cc-eee-ecchhccccchhhhccccccchhhhc
Confidence 7765544 345566778888887766 688999999888533 22 111 222 25689999999999999853
No 4
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=97.92 E-value=6.9e-05 Score=82.65 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=117.2
Q ss_pred EEEEeccccccc--cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhh
Q 005059 294 LIAADSTFGIKR--LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID 371 (716)
Q Consensus 294 vi~~DsT~~tN~--~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~n 371 (716)
.+++|++|---+ -+-.++..+|++..|..-.+++.+...|+ .-...||..|..+--. ....+++|.-...-+
T Consensus 147 ~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~-----~v~l~v~Dg~~gl~~ 220 (379)
T COG3328 147 YVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLS-----DVLLVVVDGLKGLPE 220 (379)
T ss_pred EEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcccc-----ceeEEecchhhhhHH
Confidence 799999997655 44589999999999999999999999999 5555566665543211 244567799999999
Q ss_pred hHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHhhh-hhHHHHHHHh
Q 005059 372 PIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKA 449 (716)
Q Consensus 372 AI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le~~~~~f~~-~~~F~~Yf~~ 449 (716)
||.++||.. +..|..|..+ |+..+. ..+.+.++...+..+..+. +..+....+.++.+.|.. .+.......+
T Consensus 221 aI~~v~p~a~~Q~C~vH~~R----nll~~v-~~k~~d~i~~~~~~I~~a~-~~e~~~~~~~~~~~~w~~~yP~i~~~~~~ 294 (379)
T COG3328 221 AISAVFPQAAVQRCIVHLVR----NLLDKV-PRKDQDAVLSDLRSIYIAP-DAEEALLALLAFSELWGKRYPAILKSWRN 294 (379)
T ss_pred HHHHhccHhhhhhhhhHHHh----hhhhhh-hhhhhHHHHhhhhhhhccC-CcHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 999999985 9999999998 443332 2244555666565543333 223334456666665543 3454454444
Q ss_pred hhhhhHHhHHHhhhcCCCC---CCCCCcHHHHhHHHHhhh
Q 005059 450 SWMPKLAMWLSTMRALPLA---SQEASGAIEAYHVKLKTK 486 (716)
Q Consensus 450 ~Wl~~~~~Wa~~~R~~~~~---~~~TNn~iEs~h~~LK~~ 486 (716)
.|.. .|. |-.+|-. .+.|||.+|+.|+.++..
T Consensus 295 ~~~~---~~~--F~~fp~~~r~~i~ttN~IE~~n~~ir~~ 329 (379)
T COG3328 295 ALEE---LLP--FFAFPSEIRKIIYTTNAIESLNKLIRRR 329 (379)
T ss_pred HHHH---hcc--cccCcHHHHhHhhcchHHHHHHHHHHHH
Confidence 4432 221 1113321 467999999999988864
No 5
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=97.41 E-value=0.00029 Score=61.91 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=49.1
Q ss_pred CCCCccccccceeEEEEEEeeeCCCccCCCCccccccccccccCcCCCCCCCccCceeEEEEEEeecCCcEEEEEEeccc
Q 005059 74 RGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRR 153 (716)
Q Consensus 74 ~g~~~~~~~d~~l~~~~Y~Cs~g~~~y~~~g~~~psr~~~~~~~~r~~R~~~k~gC~c~f~Vk~~~~~~~~~v~i~~~~~ 153 (716)
.+.+.+.+.++.+.+..|.|+++ |..++..+. ..+++..+++.++||+|+|.|+... ++.|.+..+. .+
T Consensus 16 ~~~s~~~~~~~~~~~~~~~C~r~-------G~~~~~~~~--~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~~~~-~~ 84 (91)
T PF03101_consen 16 KSSSRKSKKNGEIKRVTFVCSRG-------GKYKSKKKN--EEKRRRNRPSKKTGCKARINVKRRK-DGKWRVTSFV-LE 84 (91)
T ss_pred EeeeEeCCCCceEEEEEEEECCc-------ccccccccc--cccccccccccccCCCEEEEEEEcc-CCEEEEEECc-CC
Confidence 34555667889999999999963 333322211 1223446788899999999999865 7778877776 55
Q ss_pred CCC
Q 005059 154 HVN 156 (716)
Q Consensus 154 H~~ 156 (716)
|+|
T Consensus 85 HNH 87 (91)
T PF03101_consen 85 HNH 87 (91)
T ss_pred cCC
Confidence 754
No 6
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=96.50 E-value=0.0016 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=20.9
Q ss_pred eecccCC-CCCccchhhHHHhhhhc
Q 005059 583 FCDCAWS-MQGNICKHVVKVNMICA 606 (716)
Q Consensus 583 ~C~C~~~-~~G~lCkHil~V~~~~~ 606 (716)
+|+|..+ ..|+||+|+++|+...+
T Consensus 2 ~CsC~~~~~~gipC~H~i~v~~~~~ 26 (28)
T smart00575 2 TCSCRKFQLSGIPCRHALAAAIHIG 26 (28)
T ss_pred cccCCCcccCCccHHHHHHHHHHhC
Confidence 6999876 89999999999987654
No 7
>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Probab=96.28 E-value=0.056 Score=55.98 Aligned_cols=59 Identities=2% Similarity=0.006 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhhh--h-----cCCCCcCCCCcHHHHHHHHHHhh
Q 005059 178 IPYICNEIQQQTMSMIYLGIPE-ESVLEKHIEGIQR--Y-----CGSDAKVNSLASQYVQKLGMIIR 236 (716)
Q Consensus 178 ~~~Is~e~r~~I~~ll~~Gi~~-~~Il~~ire~~~k--~-----~g~~~r~~llT~kDV~Ni~~~~~ 236 (716)
...|.++..+.|.+|+..|++. .+|.+.++..+.. + ....+|...+|.+||+|......
T Consensus 155 ~q~~~~~v~~ki~eLv~~gv~~v~e~k~~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~ 221 (225)
T PF15299_consen 155 KQPLDPRVVEKIHELVAQGVTSVPEMKRHLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAK 221 (225)
T ss_pred cccCCHHHHHHHHHHHHcccccHHHHHHHHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHH
Confidence 4568999999999999999887 4554444333321 1 22346778899999999876554
No 8
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=96.22 E-value=0.0044 Score=46.09 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=22.8
Q ss_pred CCceeeecccCC-CCCccchhhHHHhhh
Q 005059 578 GSEFAFCDCAWS-MQGNICKHVVKVNMI 604 (716)
Q Consensus 578 ~~~~~~C~C~~~-~~G~lCkHil~V~~~ 604 (716)
+.....|+|+.+ ..|.+|+|+++|+..
T Consensus 11 ~~~~~~CsC~~~~~~~~~CkHi~av~~~ 38 (40)
T PF04434_consen 11 SIEQASCSCPYFQFRGGPCKHIVAVLLA 38 (40)
T ss_pred cccccEeeCCCccccCCcchhHHHHHHh
Confidence 456789999987 699999999999764
No 9
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=94.80 E-value=0.055 Score=56.27 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=64.1
Q ss_pred EEEeccccccccCCceEEEEEEcCC-CCeEEEEEEEecCCChhhHHHHHHHHH-HHhcccCCCcceEEEEEcCchhhhhh
Q 005059 295 IAADSTFGIKRLKYPLCTLLVFDSR-QHALPVAWVVTRSSAKPDVTKWMKSLL-DRARSIEPGWKISGFLIDDAAAEIDP 372 (716)
Q Consensus 295 i~~DsT~~tN~~~~pL~tl~v~d~~-g~g~Pva~~i~~~et~e~~~~~L~~l~-~~~~~~~p~~~P~~fmtD~d~A~~nA 372 (716)
|+||=+.....+.. |..++.|.. ..+-++ .++.+-+.+++..||..++ ... .-.+++|.+|...+...|
T Consensus 1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~il--~i~~~r~~~~l~~~~~~~~~~~~-----~~~v~~V~~Dm~~~y~~~ 71 (249)
T PF01610_consen 1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRIL--DILPGRDKETLKDFFRSLYPEEE-----RKNVKVVSMDMSPPYRSA 71 (249)
T ss_pred CeEeeeeeecCCcc--eeEEEEECccCCceEE--EEcCCccHHHHHHHHHHhCcccc-----ccceEEEEcCCCcccccc
Confidence 35666655554443 555566652 223333 3778888898888876552 111 126889999999999999
Q ss_pred HHHhcCCC-cccchHHHHHHHHH
Q 005059 373 IREIFCCP-LLFSLWRVRRSWLR 394 (716)
Q Consensus 373 I~~VFp~~-~LLC~wHV~qaw~k 394 (716)
+++.||+. +.+-.|||.|...+
T Consensus 72 ~~~~~P~A~iv~DrFHvvk~~~~ 94 (249)
T PF01610_consen 72 IREYFPNAQIVADRFHVVKLANR 94 (249)
T ss_pred ccccccccccccccchhhhhhhh
Confidence 99999996 89999999986544
No 10
>PF13610 DDE_Tnp_IS240: DDE domain
Probab=86.38 E-value=0.24 Score=47.29 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=59.8
Q ss_pred EEEEecccc-ccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhh
Q 005059 294 LIAADSTFG-IKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (716)
Q Consensus 294 vi~~DsT~~-tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nA 372 (716)
.+++|-||= .+.- --|..-++|..|. .+.+.++..-+...-..||..++.... -.|..|+||+..+...|
T Consensus 3 ~w~~DEt~iki~G~--~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~-----~~p~~ivtDk~~aY~~A 73 (140)
T PF13610_consen 3 SWHVDETYIKIKGK--WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR-----GEPRVIVTDKLPAYPAA 73 (140)
T ss_pred EEEEeeEEEEECCE--EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec-----cccceeecccCCccchh
Confidence 689999994 3433 3445567898888 688888888888876667665554432 26999999999999999
Q ss_pred HHHhcCCC
Q 005059 373 IREIFCCP 380 (716)
Q Consensus 373 I~~VFp~~ 380 (716)
+++.++..
T Consensus 74 ~~~l~~~~ 81 (140)
T PF13610_consen 74 IKELNPEG 81 (140)
T ss_pred hhhccccc
Confidence 99999863
No 11
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=85.89 E-value=4.2 Score=36.59 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=53.3
Q ss_pred eEEEEeccccc-cccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhh
Q 005059 293 SLIAADSTFGI-KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID 371 (716)
Q Consensus 293 ~vi~~DsT~~t-N~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~n 371 (716)
..+++|.++-. ...+-..+.++++|.+ .++.+++.+.+.++.+.+..+|...+...+. ..|+.+.+|...+..+
T Consensus 7 ~~~~~D~~~~~~~~~~~~~~~~~~iD~~-S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~p~~i~tD~g~~f~~ 81 (120)
T PF00665_consen 7 ERWQIDFTPMPIPDKGGRVYLLVFIDDY-SRFIYAFPVSSKETAEAALRALKRAIEKRGG----RPPRVIRTDNGSEFTS 81 (120)
T ss_dssp TEEEEEEEEETGGCTT-CEEEEEEEETT-TTEEEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHHS
T ss_pred CEEEEeeEEEecCCCCccEEEEEEEECC-CCcEEEEEeeccccccccccccccccccccc----ccceeccccccccccc
Confidence 37999999433 2233378888999986 5566788888888888887777766665542 1299999999988775
Q ss_pred h
Q 005059 372 P 372 (716)
Q Consensus 372 A 372 (716)
.
T Consensus 82 ~ 82 (120)
T PF00665_consen 82 H 82 (120)
T ss_dssp H
T ss_pred c
Confidence 4
No 12
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=85.70 E-value=2.4 Score=38.86 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=25.5
Q ss_pred CCCCCccCceeEEEEEEeec--CCcEEEEEEecccCCC
Q 005059 121 ARPQSMRGCTCHFVVKRLYA--RPSLALLIYNDRRHVN 156 (716)
Q Consensus 121 ~R~~~k~gC~c~f~Vk~~~~--~~~~~v~i~~~~~H~~ 156 (716)
.+++.++.|.|+|+|+..+. ...|.+++.+ +.|+|
T Consensus 73 ~k~t~srk~~CPFriRA~yS~k~k~W~lvvvn-n~HnH 109 (111)
T PF08731_consen 73 KKRTKSRKNTCPFRIRANYSKKNKKWTLVVVN-NEHNH 109 (111)
T ss_pred CCcccccccCCCeEEEEEEEecCCeEEEEEec-CCcCC
Confidence 34556788999999998754 5677777777 55754
No 13
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition. This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=83.45 E-value=1.5 Score=46.40 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=48.3
Q ss_pred EEEEeccccc----cc-cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchh
Q 005059 294 LIAADSTFGI----KR-LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAA 368 (716)
Q Consensus 294 vi~~DsT~~t----N~-~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A 368 (716)
++++|-|.-. .+ -+.=+.++.. .. .+.|.+..+-..+.+..+|.. + ..++++|.-.+
T Consensus 69 ~~~~DET~~~vl~~~~g~~~~~Wv~~~--~~----~v~f~~~~sR~~~~~~~~L~~-----------~-~GilvsD~y~~ 130 (271)
T PF03050_consen 69 VVHADETGWRVLDKGKGKKGYLWVFVS--PE----VVLFFYAPSRSSKVIKEFLGD-----------F-SGILVSDGYSA 130 (271)
T ss_pred eeccCCceEEEeccccccceEEEeeec--cc----eeeeeecccccccchhhhhcc-----------c-ceeeecccccc
Confidence 7777777644 22 2222333322 22 566777776666665555422 1 24788888876
Q ss_pred hhhhHHHhcCCCcccchHHHHHHHHHHH
Q 005059 369 EIDPIREIFCCPLLFSLWRVRRSWLRNI 396 (716)
Q Consensus 369 ~~nAI~~VFp~~~LLC~wHV~qaw~k~l 396 (716)
... +. +..+.+|+-|+.+.+.+-.
T Consensus 131 Y~~-~~---~~~hq~C~AH~~R~~~~~~ 154 (271)
T PF03050_consen 131 YNK-LA---GITHQLCWAHLRRDFQDAA 154 (271)
T ss_pred ccc-cc---ccccccccccccccccccc
Confidence 555 22 5579999999998665433
No 14
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=82.18 E-value=1e+02 Score=35.54 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=65.4
Q ss_pred EEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHhh
Q 005059 360 GFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFV 438 (716)
Q Consensus 360 ~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le~~~~~f~ 438 (716)
++..|.+.=..++. +.||.. +.|..||+.|+..+.+.. ..+.+..+++.|.. - +...++..++.+...-.
T Consensus 261 iingDGa~WIk~~~-~~~~~~~~~LD~FHl~k~i~~~~~~---~~~~~~~~~~al~~----~-d~~~l~~~L~~~~~~~~ 331 (470)
T PF06782_consen 261 IINGDGASWIKEGA-EFFPKAEYFLDRFHLNKKIKQALSH---DPELKEKIRKALKK----G-DKKKLETVLDTAESCAK 331 (470)
T ss_pred EEeCCCcHHHHHHH-HhhcCceEEecHHHHHHHHHHHhhh---ChHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhhh
Confidence 34557776554444 488875 899999999988876632 23444445544432 1 11222333443332221
Q ss_pred h------hhHHHHHHHhhhhhhHHhHHHhhhcCCCCCCCCCcHHHHhHHHHhhhhcCC
Q 005059 439 D------QTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDD 490 (716)
Q Consensus 439 ~------~~~F~~Yf~~~Wl~~~~~Wa~~~R~~~~~~~~TNn~iEs~h~~LK~~ll~~ 490 (716)
+ -.++..|+.++|-. + ..|+.. .+.......|+.|+.|.+.+-.+
T Consensus 332 ~~~~~~~i~~~~~Yl~~n~~~-i----~~y~~~--~~~~g~g~ee~~~~~~s~RmK~r 382 (470)
T PF06782_consen 332 DEEERKKIRKLRKYLLNNWDG-I----KPYRER--EGLRGIGAEESVSHVLSYRMKSR 382 (470)
T ss_pred chHHHHHHHHHHHHHHHCHHH-h----hhhhhc--cCCCccchhhhhhhHHHHHhcCC
Confidence 1 24688999999953 2 234320 12334455899999998776544
No 15
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=73.67 E-value=33 Score=33.36 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=70.8
Q ss_pred HHHHHHhCCceEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEec-CCChhhHHHHHHHHHHHhcccCCCcceEEE
Q 005059 283 LQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTR-SSAKPDVTKWMKSLLDRARSIEPGWKISGF 361 (716)
Q Consensus 283 ~~~l~~fg~~~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~-~et~e~~~~~L~~l~~~~~~~~p~~~P~~f 361 (716)
++.+..+|- .|..|+= |+..+.+|+.+++.-..|..|.-..-.++ ..+.+.+...|....+.++.. ..-.|
T Consensus 26 k~~w~~~Gc--si~~DgW--td~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG~~----nVvqV 97 (153)
T PF04937_consen 26 KKSWKRTGC--SIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEVGEE----NVVQV 97 (153)
T ss_pred HHHHHhcCE--EEEEecC--cCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHhhhh----hhhHH
Confidence 445566675 5888885 55567789999998777665544433322 235555666666666666543 45568
Q ss_pred EEcCchhhhhhHHHhcCC-C---cccchHHHHHHHHHHHH
Q 005059 362 LIDDAAAEIDPIREIFCC-P---LLFSLWRVRRSWLRNIV 397 (716)
Q Consensus 362 mtD~d~A~~nAI~~VFp~-~---~LLC~wHV~qaw~k~l~ 397 (716)
+||.+..+..|.+-.... + ...|.-|...-..+.+.
T Consensus 98 VTDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~ 137 (153)
T PF04937_consen 98 VTDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIG 137 (153)
T ss_pred hccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHh
Confidence 999999999997665543 2 46799999976555553
No 16
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=66.88 E-value=26 Score=37.09 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=50.5
Q ss_pred eEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecC-CChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhh
Q 005059 293 SLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRS-SAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAE 369 (716)
Q Consensus 293 ~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~-et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~ 369 (716)
.+++.|-||-....+--+|..+|+|.+.+ ..|||.+..+ .+.+.+..+|...++...+......|..|-||.-...
T Consensus 88 ~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsqy 164 (262)
T PRK14702 88 QRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY 164 (262)
T ss_pred CEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCCCCCeEEEcCCCccc
Confidence 38999999865555656889999998865 5599999874 5666666666544433211111225677888887543
No 17
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=65.96 E-value=7.5 Score=44.89 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=28.8
Q ss_pred eEEEeeccCCceEEEE-ecCCCceeeecccCCCCCccchhhHHHhhhhc
Q 005059 559 FARVSSQKDSSLTHLV-WNPGSEFAFCDCAWSMQGNICKHVVKVNMICA 606 (716)
Q Consensus 559 ~~~V~Sq~~~~~~~vv-~n~~~~~~~C~C~~~~~G~lCkHil~V~~~~~ 606 (716)
.+.|..+.. +.+.| .+-+.-.++|+|+. -.+..|||+.+|...+-
T Consensus 51 ~A~V~Gs~~--y~v~vtL~~~~~ss~CTCP~-~~~gaCKH~VAvvl~~~ 96 (587)
T COG4715 51 RAVVEGSRR--YRVRVTLEGGALSSICTCPY-GGSGACKHVVAVVLEYL 96 (587)
T ss_pred EEEEeccce--eeEEEEeecCCcCceeeCCC-CCCcchHHHHHHHHHHh
Confidence 355554442 32222 22455569999997 55668999999977663
No 18
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=61.58 E-value=4.1 Score=42.40 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=18.3
Q ss_pred eeecccCCCCCccchhhHHHhhhhc
Q 005059 582 AFCDCAWSMQGNICKHVVKVNMICA 606 (716)
Q Consensus 582 ~~C~C~~~~~G~lCkHil~V~~~~~ 606 (716)
.-|+|+ ...++||||.+|.-+-.
T Consensus 125 ~dCSCP--D~anPCKHi~AvyY~la 147 (266)
T COG4279 125 TDCSCP--DYANPCKHIAAVYYLLA 147 (266)
T ss_pred cccCCC--CcccchHHHHHHHHHHH
Confidence 568997 67889999999965543
No 19
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=57.97 E-value=38 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=21.7
Q ss_pred cCceeEEEEEEeecCCcEEEEEEecccCCC
Q 005059 127 RGCTCHFVVKRLYARPSLALLIYNDRRHVN 156 (716)
Q Consensus 127 ~gC~c~f~Vk~~~~~~~~~v~i~~~~~H~~ 156 (716)
.||+|+=.|.+...++.+.+++|. .+|+|
T Consensus 30 ~~C~akK~Vqr~~~d~~~~~vtY~-G~H~h 58 (60)
T PF03106_consen 30 PGCPAKKQVQRSADDPNIVIVTYE-GEHNH 58 (60)
T ss_dssp TTEEEEEEEEEETTCCCEEEEEEE-S--SS
T ss_pred cChhheeeEEEecCCCCEEEEEEe-eeeCC
Confidence 389999888887668888888888 56765
No 20
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=56.84 E-value=49 Score=35.76 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred eEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecC-CChhhHHHHHHHHHHHh-cccCCCcceEEEEEcCchhh
Q 005059 293 SLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRS-SAKPDVTKWMKSLLDRA-RSIEPGWKISGFLIDDAAAE 369 (716)
Q Consensus 293 ~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~-et~e~~~~~L~~l~~~~-~~~~p~~~P~~fmtD~d~A~ 369 (716)
.+++.|-||-...-+.-+|..+|+|.+.+ ..|||.+... .+.+....+|...+... +...| ..|..|-||.-...
T Consensus 127 ~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~~-~~~~iihSDrGsqy 203 (301)
T PRK09409 127 QRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLP-SSPVEWLTDNGSCY 203 (301)
T ss_pred CEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCCC-CCCcEEecCCCccc
Confidence 39999999965444555888889998865 5699999976 57776666665433332 21111 24557778876543
No 21
>COG3464 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=56.67 E-value=80 Score=35.70 Aligned_cols=54 Identities=11% Similarity=0.253 Sum_probs=41.7
Q ss_pred EecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhhHHHhcCCC-cccchHHHHH
Q 005059 329 VTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRR 390 (716)
Q Consensus 329 i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~q 390 (716)
|..+-+.+++..+| ++.+.. +.+.+.+|......+++++.||+. +.+=.||+.+
T Consensus 184 i~~~r~~~ti~~~l----~~~g~~----~v~~V~~D~~~~y~~~v~e~~pna~i~~d~fh~~~ 238 (402)
T COG3464 184 ILEGRSVRTLRRYL----RRGGSE----QVKSVSMDMFGPYASAVQELFPNALIIADRFHVVQ 238 (402)
T ss_pred ecCCccHHHHHHHH----HhCCCc----ceeEEEccccHHHHHHHHHhCCChheeeeeeeeee
Confidence 45566677666555 333321 688999999999999999999996 7888888876
No 22
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=51.65 E-value=57 Score=33.64 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=63.6
Q ss_pred EEEEecccc-ccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhh
Q 005059 294 LIAADSTFG-IKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (716)
Q Consensus 294 vi~~DsT~~-tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nA 372 (716)
.+.+|=||- .+.-..-|+-. +|.. |.++-+.+...-+......||..+++..+ .|.+|+||+......|
T Consensus 72 ~w~vDEt~ikv~gkw~ylyrA--id~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~~g------~p~v~vtDka~s~~~A 141 (215)
T COG3316 72 SWRVDETYIKVNGKWHYLYRA--IDAD--GLTLDVWLSKRRNALAAKAFLKKLLKKHG------EPRVFVTDKAPSYTAA 141 (215)
T ss_pred ceeeeeeEEeeccEeeehhhh--hccC--CCeEEEEEEcccCcHHHHHHHHHHHHhcC------CCceEEecCccchHHH
Confidence 799999995 34333344443 3443 67788888888777777777777666552 5899999999999999
Q ss_pred HHHhcCC----C-----cccchHHHHHHHHHH
Q 005059 373 IREIFCC----P-----LLFSLWRVRRSWLRN 395 (716)
Q Consensus 373 I~~VFp~----~-----~LLC~wHV~qaw~k~ 395 (716)
++++-+. + .+.-.||.--+|+++
T Consensus 142 ~~~l~~~~ehr~~~ylnN~iE~dh~~iKrr~~ 173 (215)
T COG3316 142 LRKLGSEVEHRTSKYLNNRIEQDHRPIKRRTR 173 (215)
T ss_pred HHhcCcchheecccccccchhhcchhHHHHhc
Confidence 9988772 1 244556655554443
No 23
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=46.57 E-value=11 Score=28.54 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHH
Q 005059 179 PYICNEIQQQTMSMIYLGIPEESVLE 204 (716)
Q Consensus 179 ~~Is~e~r~~I~~ll~~Gi~~~~Il~ 204 (716)
++||.++|..|..|...|.+..+|-.
T Consensus 3 ~~Lt~~eR~~I~~l~~~G~s~~~IA~ 28 (44)
T PF13936_consen 3 KHLTPEERNQIEALLEQGMSIREIAK 28 (44)
T ss_dssp ---------HHHHHHCS---HHHHHH
T ss_pred cchhhhHHHHHHHHHHcCCCHHHHHH
Confidence 45899999999999999999998854
No 24
>PHA02517 putative transposase OrfB; Reviewed
Probab=44.26 E-value=52 Score=34.65 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=46.5
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhh
Q 005059 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEI 370 (716)
Q Consensus 294 vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~ 370 (716)
+++.|-||-....+. .|...++|.+. ...+||.+....+.+.+..+|..++...+ .| .+-.|.||....+.
T Consensus 112 ~w~~D~t~~~~~~g~-~yl~~iiD~~s-r~i~~~~~~~~~~~~~~~~~l~~a~~~~~--~~--~~~i~~sD~G~~y~ 182 (277)
T PHA02517 112 LWVADFTYVSTWQGW-VYVAFIIDVFA-RRIVGWRVSSSMDTDFVLDALEQALWARG--RP--GGLIHHSDKGSQYV 182 (277)
T ss_pred eEEeceeEEEeCCCC-EEEEEecccCC-CeeeecccCCCCChHHHHHHHHHHHHhcC--CC--cCcEeecccccccc
Confidence 899999985433343 57778888874 45588999888888876666655544322 11 12356788876543
No 25
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=31.53 E-value=21 Score=32.43 Aligned_cols=21 Identities=29% Similarity=0.812 Sum_probs=14.5
Q ss_pred eeeecccCC-----CCCc-cchhhHHH
Q 005059 581 FAFCDCAWS-----MQGN-ICKHVVKV 601 (716)
Q Consensus 581 ~~~C~C~~~-----~~G~-lCkHil~V 601 (716)
-.+|+|+.+ ..|. +|+|++.+
T Consensus 49 ~gfCSCp~~~~svvl~Gk~~C~Hi~gl 75 (117)
T COG5431 49 GGFCSCPDFLGSVVLKGKSPCAHIIGL 75 (117)
T ss_pred cCcccCHHHHhHhhhcCcccchhhhhe
Confidence 359999843 2343 59999865
No 26
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=30.56 E-value=81 Score=23.82 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHH
Q 005059 180 YICNEIQQQTMSMIYLGIPEESVLE 204 (716)
Q Consensus 180 ~Is~e~r~~I~~ll~~Gi~~~~Il~ 204 (716)
.+++++.+.|..|...|++..+|..
T Consensus 5 ~~~~~~~~~i~~l~~~G~si~~IA~ 29 (45)
T PF02796_consen 5 KLSKEQIEEIKELYAEGMSIAEIAK 29 (45)
T ss_dssp SSSHCCHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHH
Confidence 4788889999999999999988854
No 27
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=38 Score=33.98 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=25.1
Q ss_pred CCCCcchhhHHHHHHhhccCCCCCchh
Q 005059 611 YQPSMSFQSLREVLMNLWTKPMDDSVE 637 (716)
Q Consensus 611 ~~p~~~~~~~~~~~~~~~~~p~~~~~~ 637 (716)
--|++-+.||+|-|.-.|.+-||+||-
T Consensus 186 e~P~lrlsQ~Kqll~Kew~KsPDNP~N 212 (221)
T KOG3223|consen 186 ENPGLRLSQYKQLLKKEWQKSPDNPFN 212 (221)
T ss_pred cCCCccHHHHHHHHHHHHhhCCCChhh
Confidence 379999999999999999999999984
No 28
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.57 E-value=4.6e+02 Score=29.83 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHhhhccccCCcchHHHHHHHHHhcCCeeeEecCCCCCCCeEEEccCHHHHHHHHHhCCceEEEEeccccc
Q 005059 224 ASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGI 303 (716)
Q Consensus 224 T~kDV~Ni~~~~~r~~~~l~~nD~~Sv~~wv~~~~~~vffy~d~~d~~~f~l~iqt~~q~~~l~~fg~~~vi~~DsT~~t 303 (716)
|++-+.++..++...+...+.+|...+..-+++ +..++|.. +-.+|++-+.--+.-+++..++|- ++++|.||++
T Consensus 129 T~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~E--SPsNPll~v~DI~~l~~la~~~g~--~vvVDnTf~~ 203 (409)
T KOG0053|consen 129 TLRILRKFLPKFGGEGDFVDVDDLKKILKAIKE-NTKAVFLE--SPSNPLLKVPDIEKLARLAHKYGF--LVVVDNTFGS 203 (409)
T ss_pred HHHHHHHHHHHhCceeeeechhhHHHHHHhhcc-CceEEEEE--CCCCCccccccHHHHHHHHhhCCC--EEEEeCCcCc
Confidence 333344444433333333344444444444443 34566665 344577666556666777888887 8999999987
Q ss_pred --cccCCce-EEEEEEcC----CCCeEEEEEEEecC
Q 005059 304 --KRLKYPL-CTLLVFDS----RQHALPVAWVVTRS 332 (716)
Q Consensus 304 --N~~~~pL-~tl~v~d~----~g~g~Pva~~i~~~ 332 (716)
|..-+|| .-+++... .|++=.+|=.++.+
T Consensus 204 p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n 239 (409)
T KOG0053|consen 204 PYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLN 239 (409)
T ss_pred ccccChhhcCCCEEEEeeeeeecCCcceeeeEEecC
Confidence 5555666 33333322 24444555444443
No 29
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=28.27 E-value=63 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhcC
Q 005059 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCG 215 (716)
Q Consensus 181 Is~e~r~~I~~ll~~Gi~~~~Il~~ire~~~k~~g 215 (716)
|..++|.+|.+++..|-+.++|++.. +.+||.
T Consensus 58 iA~dmR~~Vr~~i~~G~Sd~eI~~~~---v~RYG~ 89 (126)
T TIGR03147 58 IAYDLRHEVYSMVNEGKSNQQIIDFM---TARFGD 89 (126)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH---HHhcCC
Confidence 78899999999999999999998765 345554
No 30
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=27.28 E-value=23 Score=19.12 Aligned_cols=8 Identities=63% Similarity=1.232 Sum_probs=6.5
Q ss_pred cccccccc
Q 005059 40 ALIPYARV 47 (716)
Q Consensus 40 ~~~~~~~~ 47 (716)
.||||-||
T Consensus 4 GlI~fpR~ 11 (11)
T PF08259_consen 4 GLIPFPRV 11 (11)
T ss_pred cccccCCC
Confidence 48999886
No 31
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=24.05 E-value=84 Score=29.71 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhcC
Q 005059 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCG 215 (716)
Q Consensus 181 Is~e~r~~I~~ll~~Gi~~~~Il~~ire~~~k~~g 215 (716)
|..+.|.+|.+++..|-+.++|++.+ +.+||.
T Consensus 58 iA~dmR~~Vr~~i~~G~sd~eI~~~~---v~RYG~ 89 (126)
T PRK10144 58 VAVSMRHQVYSMVAEGKSEVEIIGWM---TERYGD 89 (126)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH---HHhcCC
Confidence 77899999999999999999998765 345554
No 32
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=22.74 E-value=72 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhcC
Q 005059 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCG 215 (716)
Q Consensus 181 Is~e~r~~I~~ll~~Gi~~~~Il~~ire~~~k~~g 215 (716)
+..++|.+|.+++..|-+.++|++.. +.+||.
T Consensus 58 ~A~dmR~~I~~~l~~G~s~~eI~~~~---v~rYG~ 89 (148)
T PF03918_consen 58 IARDMRREIREMLAEGKSDEEIIDYF---VERYGE 89 (148)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHH---HHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH---HHhcCc
Confidence 67899999999999999999998765 345553
Done!