Query 005060
Match_columns 716
No_of_seqs 352 out of 861
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.2E-28 4.2E-33 230.0 12.6 115 141-255 6-122 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.8E-17 9.7E-22 156.4 9.8 99 144-252 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 5.1E-14 1.7E-18 126.0 8.7 94 146-250 8-101 (104)
4 1wmh_B Partitioning defective- 95.6 0.047 1.6E-06 47.9 8.5 70 619-696 8-83 (86)
5 1vd2_A Protein kinase C, IOTA 94.4 0.093 3.2E-06 46.3 7.0 58 618-682 7-64 (89)
6 1na6_A Ecorii, restriction end 93.2 0.12 4E-06 56.5 6.7 93 145-238 17-123 (404)
7 1q1o_A Cell division control p 91.6 0.51 1.7E-05 42.4 7.6 73 618-691 6-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 89.2 0.6 2.1E-05 42.1 6.0 60 618-682 6-80 (102)
9 2ktr_A Sequestosome-1; autopha 88.4 0.82 2.8E-05 42.2 6.4 59 617-682 20-95 (117)
10 1oey_A P67-PHOX, neutrophil cy 87.4 1.6 5.4E-05 38.0 7.3 69 620-697 8-79 (83)
11 1pqs_A Cell division control p 79.2 2.6 8.8E-05 36.1 5.1 59 632-691 5-64 (77)
12 2bkf_A Zinc-finger protein NBR 79.1 5.1 0.00017 35.2 7.0 63 620-692 9-74 (87)
13 1wj6_A KIAA0049 protein, RSGI 77.5 5.7 0.0002 35.8 7.0 60 620-689 17-76 (101)
14 1oey_J P40-PHOX, neutrophil cy 66.0 6.7 0.00023 35.5 4.7 53 634-696 28-80 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 56.6 57 0.0019 30.9 9.7 100 227-342 3-110 (158)
16 3p8d_A Medulloblastoma antigen 45.3 24 0.00082 29.5 4.4 55 309-382 3-57 (67)
17 2k8i_A SLYD, peptidyl-prolyl C 43.9 1.4E+02 0.0046 28.6 10.2 102 227-342 3-114 (171)
18 2kfw_A FKBP-type peptidyl-prol 41.5 45 0.0015 32.8 6.5 102 227-342 3-114 (196)
19 1e8p_A Endoglucanase, dockerin 38.3 8.9 0.00031 30.0 0.7 15 665-679 19-33 (46)
20 2jng_A Cullin-7, CUL-7; P53 bi 36.8 29 0.001 31.4 3.9 71 301-385 10-80 (105)
21 2kr7_A FKBP-type peptidyl-prol 34.1 2.7E+02 0.0091 25.8 10.3 105 224-342 4-119 (151)
22 4dt4_A FKBP-type 16 kDa peptid 33.5 1.6E+02 0.0054 28.3 8.8 105 226-342 24-138 (169)
23 3qii_A PHD finger protein 20; 30.8 51 0.0018 28.8 4.3 54 310-382 19-72 (85)
24 3o27_A Putative uncharacterize 28.2 39 0.0013 28.4 2.9 34 219-252 31-65 (68)
25 1mhn_A SurviVal motor neuron p 25.1 78 0.0027 24.9 4.2 29 311-342 2-30 (59)
26 3m7a_A Uncharacterized protein 22.2 97 0.0033 29.1 4.9 47 186-235 83-140 (140)
27 2e63_A KIAA1787 protein; struc 21.4 57 0.0019 31.5 3.2 23 225-247 116-138 (170)
28 2equ_A PHD finger protein 20-l 21.3 84 0.0029 26.5 3.8 40 310-363 7-46 (74)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.2e-28 Score=230.01 Aligned_cols=115 Identities=31% Similarity=0.472 Sum_probs=104.7
Q ss_pred CCCCceeeEEEEeccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccccch
Q 005060 141 PPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSV 220 (716)
Q Consensus 141 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~~LTtGWs~ 220 (716)
..++..++|+|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 45667789999999999999999999999999999999987666789999999999999999999999999999999999
Q ss_pred heecCCCCCCCEEEEEEcCC--CcEEEEEEEeccccC
Q 005060 221 FVTSKKLVAGDVCIFLRGGD--GELRVGVRRAMKLQN 255 (716)
Q Consensus 221 FV~~K~L~aGD~VvF~R~~~--G~l~vGIRRa~~~~~ 255 (716)
||++|+|++||+|+|++.++ +.|+|++||+.+...
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~ 122 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCc
Confidence 99999999999999999864 569999999986553
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.70 E-value=2.8e-17 Score=156.42 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=86.5
Q ss_pred CceeeEEEEeccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccccchhee
Q 005060 144 LNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVT 223 (716)
Q Consensus 144 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~~LTtGWs~FV~ 223 (716)
+..++|.|+||+||+.++..|.||+++++.|||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 355799999999999887789999999999999653 45777887 6999999999974 6899999999999
Q ss_pred cCCCCCCCEEEEEEcCCC--cEEEEEEEecc
Q 005060 224 SKKLVAGDVCIFLRGGDG--ELRVGVRRAMK 252 (716)
Q Consensus 224 ~K~L~aGD~VvF~R~~~G--~l~vGIRRa~~ 252 (716)
+++|++||.|+|...++. .+.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998765 58999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.49 E-value=5.1e-14 Score=126.03 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=81.6
Q ss_pred eeeEEEEeccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccccchheecC
Q 005060 146 VCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSK 225 (716)
Q Consensus 146 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~~LTtGWs~FV~~K 225 (716)
.+.|.|+|+++|.. .++.||+++++.+.+.+ ...+.++|..|++|.+++.+++ ++++|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCcc--ceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 36899999999943 48999999998865533 2468889999999999999874 5689999999999999
Q ss_pred CCCCCCEEEEEEcCCCcEEEEEEEe
Q 005060 226 KLVAGDVCIFLRGGDGELRVGVRRA 250 (716)
Q Consensus 226 ~L~aGD~VvF~R~~~G~l~vGIRRa 250 (716)
+|++||.|+|....+..+.|-|-|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999998764
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.57 E-value=0.047 Score=47.93 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=52.3
Q ss_pred eEEEEEcCceeeeeecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccCCChHHH---Hhcce---
Q 005060 619 CTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDF---QCAVR--- 692 (716)
Q Consensus 619 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD~PW~~F---~~~vk--- 692 (716)
-||.+-+++--==++|-+...+|++|+..|+++|.+.+ -.+.|.|+|.+||++-+-++ ++| +.++|
T Consensus 8 ~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~------~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~plL 79 (86)
T 1wmh_B 8 EVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG------LDVLLGYTDAHGDLLPLTND--DSLHRALASGPPPL 79 (86)
T ss_dssp EEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT------CCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSCE
T ss_pred EEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC------CCEEEEEECCCCCEeeecCH--HHHHHHHHhCCCcE
Confidence 36888887632225666778899999999999998633 34899999999999998766 555 44555
Q ss_pred eeEE
Q 005060 693 RMFI 696 (716)
Q Consensus 693 ri~I 696 (716)
||+|
T Consensus 80 Rl~I 83 (86)
T 1wmh_B 80 RLLV 83 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5555
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.37 E-value=0.093 Score=46.26 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=45.0
Q ss_pred ceEEEEEcCceeeeeecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccCC
Q 005060 618 SCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDN 682 (716)
Q Consensus 618 ~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD~ 682 (716)
.-||++-+|.-+-=.|+. --+|++|+++|.++|.+. ....+++.|.|.|||+.-+-.+
T Consensus 7 vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp EEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSH
T ss_pred EEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCH
Confidence 458999999744334444 569999999999999974 2345799999999998776554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.22 E-value=0.12 Score=56.46 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=65.9
Q ss_pred ceeeEEEEeccccCCCC----CceeeccccccccCCCCCC-CCCCCceEEEEE--eCCCCEEEEEEEEeC------CCCc
Q 005060 145 NVCSFSKKLTPSDTSTH----GGFSVPKRHADECLPPLDM-SKDPPLQELVAK--DLHGLEWRFRHIYRG------QPKR 211 (716)
Q Consensus 145 ~~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~prr 211 (716)
....|+|.|++.|++.. .+|.+|+..+..+||.|.. ...+|.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 35789999999999865 4899999778999999983 343566666554 443445599999997 3345
Q ss_pred eeeccccc-hheecCCCCCCCEEEEEEc
Q 005060 212 HLLTSGWS-VFVTSKKLVAGDVCIFLRG 238 (716)
Q Consensus 212 ~~LTtGWs-~FV~~K~L~aGD~VvF~R~ 238 (716)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 77862 22 2344466778998888743
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.64 E-value=0.51 Score=42.35 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=53.6
Q ss_pred ceEEEEEcCce----e--eeeecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccC-CChHHHHhc
Q 005060 618 SCTKVIKFGTA----L--GRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGD-NPWQDFQCA 690 (716)
Q Consensus 618 ~~vKV~meG~~----v--GR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 690 (716)
.-|||+-++.. + -|.|=+..--+|++|+.++.+=|.+.-. .+-....++-|+|.|||+..+++ +=|++-+.+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-SCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 46788877421 2 3777777888999999999999997511 11124568999999999987765 668877776
Q ss_pred c
Q 005060 691 V 691 (716)
Q Consensus 691 v 691 (716)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=89.23 E-value=0.6 Score=42.06 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=42.9
Q ss_pred ceEEEEEcCc----eeeeeecCCC-----------CCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccCC
Q 005060 618 SCTKVIKFGT----ALGRSVDLTR-----------FHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDN 682 (716)
Q Consensus 618 ~~vKV~meG~----~vGR~vDLs~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD~ 682 (716)
.-||++..|. .-=|.+=|.. ..+|++|...+.++|.- |. +.++.|.|.|.|||+.-+.++
T Consensus 6 ~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~--~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR--PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC--SSCEEEEEECTTCCEEEECSH
T ss_pred EEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---cC--CCcEEEEEECCCCCEEEecCH
Confidence 3479988752 2334444432 25899999999999962 11 235899999999999988776
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=88.39 E-value=0.82 Score=42.21 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=43.3
Q ss_pred cceEEEEEcC-----ceeeeeecCC-----------CCCChHHHHHHHHhhhc-cCCCcCCCCCCcEEEEecCCCCeEEc
Q 005060 617 RSCTKVIKFG-----TALGRSVDLT-----------RFHGYDELISELDQMFD-FNGSLIDGNSGFHIAYMDDEGDMMLV 679 (716)
Q Consensus 617 ~~~vKV~meG-----~~vGR~vDLs-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~~v~Y~D~eGD~mlv 679 (716)
..-||++..| ..| |.+=|. ...+|++|...+.++|. +.+ .++.|.|.|.|||+.-+
T Consensus 20 ~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~------~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 20 SLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP------GGFQAHYRAERGDLVAF 92 (117)
T ss_dssp CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS------SCEEEEEECTTCCEEEE
T ss_pred cEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC------CcEEEEEECCCCCEEEe
Confidence 3457999974 333 444333 24699999999999995 432 35899999999999888
Q ss_pred cCC
Q 005060 680 GDN 682 (716)
Q Consensus 680 GD~ 682 (716)
..+
T Consensus 93 SsD 95 (117)
T 2ktr_A 93 SSD 95 (117)
T ss_dssp CSH
T ss_pred cCH
Confidence 765
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.40 E-value=1.6 Score=38.01 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=56.5
Q ss_pred EEEEEcCceeeeeecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEec-CCCCeEEccCCChHHHHhcce--eeEE
Q 005060 620 TKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMD-DEGDMMLVGDNPWQDFQCAVR--RMFI 696 (716)
Q Consensus 620 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~I 696 (716)
||||-+ .--+|....=-+|.+|.+.|.+=+.+.++-. ++-|.| .+|.+++.+|.=++.-..-|+ ||++
T Consensus 8 VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~~------~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 8 LKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEHT------KLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGGC------CEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCccee------EEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 577766 5778888888999999999999998865432 788999 688888999999999888855 6776
Q ss_pred e
Q 005060 697 C 697 (716)
Q Consensus 697 ~ 697 (716)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=79.24 E-value=2.6 Score=36.12 Aligned_cols=59 Identities=17% Similarity=0.381 Sum_probs=43.2
Q ss_pred eecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccC-CChHHHHhcc
Q 005060 632 SVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGD-NPWQDFQCAV 691 (716)
Q Consensus 632 ~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~v 691 (716)
.|=...--+|++|+.++.+=|.+. ...+.....++-|+|.|||+...++ +=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 344455568999999999999964 1111135678999999999977665 6788877765
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.09 E-value=5.1 Score=35.24 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=46.5
Q ss_pred EEEEEcCceeeee--ecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccC-CChHHHHhcce
Q 005060 620 TKVIKFGTALGRS--VDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGD-NPWQDFQCAVR 692 (716)
Q Consensus 620 vKV~meG~~vGR~--vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~vk 692 (716)
.||.-.|.. |+ |.-..--++++|...+..+|++.. ++|.|.|.|||-.-|-- .=++|=+++++
T Consensus 9 lkV~f~ge~--~rf~vs~~~~~tweel~~mvk~~f~L~~--------~~ikY~DEenD~v~i~Sq~E~eEAlkva~ 74 (87)
T 2bkf_A 9 LNVTFKNEI--QSFLVSDPENTTWADIEAMVKVSFDLNT--------IQIKYLDEENEEVSINSQGEYEEALKMAV 74 (87)
T ss_dssp EEEEETTEE--EEEEESCGGGCCHHHHHHHHHHHHTCSS--------EEEEEECTTSCEEEECSHHHHHHHHHHHH
T ss_pred EEEEEcCCe--eEEEeccCCCCCHHHHHHHHHHHcCCCc--------eEEEEEcCCCCEEEEecHHHHHHHHHHhc
Confidence 599999974 55 533447799999999999999853 59999999999887643 33444444443
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=77.49 E-value=5.7 Score=35.79 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=45.5
Q ss_pred EEEEEcCceeeeeecCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccCCChHHHHh
Q 005060 620 TKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQC 689 (716)
Q Consensus 620 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~ 689 (716)
.||.-.|...==-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|= -+.+|-+
T Consensus 17 lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~--------~~IkY~DEenD~V~i~--Sq~E~eE 76 (101)
T 1wj6_A 17 LNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT--------IQIKYLDEENEEVSIN--SQGEYEE 76 (101)
T ss_dssp EEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS--------BCCEEECTTSCEECCC--SHHHHHH
T ss_pred EEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc--------eEEEEecCCCCEEEEe--cHHHHHH
Confidence 6999999853223644447799999999999999863 5899999999998873 3455533
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=66.01 E-value=6.7 Score=35.55 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=40.3
Q ss_pred cCCCCCChHHHHHHHHhhhccCCCcCCCCCCcEEEEecCCCCeEEccCCChHHHHhcceeeEE
Q 005060 634 DLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFI 696 (716)
Q Consensus 634 DLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkri~I 696 (716)
||+.--.|++|+....+-|.-+. -.+-|+|.|||+.-+=|+ ++--=|+++-++
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D--------IaLNYrD~eGDLIrildd--eDv~lmi~~sr~ 80 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED--------IALNYRDAEGDLVRLLSD--EDVALMVRQARG 80 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS--------EEEEEECTTSCEEECCSH--HHHHHHHHHCCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc--------eeeeeecCCCCEEEEcch--HHHHHHHHHhhc
Confidence 78888999999999999998432 478899999999877665 444444444433
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=56.64 E-value=57 Score=30.87 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCCCEEEEE-Ec-CCCcEEEEEEEeccccCCCCcccccccccccchhHHHHHHHhcCCeEEEEEecCC------CCCce
Q 005060 227 LVAGDVCIFL-RG-GDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWT------RPAEF 298 (716)
Q Consensus 227 L~aGD~VvF~-R~-~~G~l~vGIRRa~~~~~~~p~sv~s~~s~~~gvla~a~~a~~tg~~F~V~Y~Pr~------s~~EF 298 (716)
.+.||.|.+. .. .+|+.+-.-+ .... +....+-.| +++|......|..++|.--|-. .-.-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~-------~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL-------HGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE-------TTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE-------ECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 22 5776654433 1111 111112122 4566667778888888876632 23457
Q ss_pred EEehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 299 LVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 299 vV~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
.|+++.+... ..|.+||+|.+.-+ + .+...|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~~~--~--G~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQDM--E--GNPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEEET--T--TEEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEECC--C--CCEEEEEEEEECC
Confidence 8888888643 58999999986543 3 2567899999976
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=45.35 E-value=24 Score=29.49 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=39.6
Q ss_pred hccCCccccEEEEEecCCcccccceeEEEEeeecCCCCCCCCCcccceeeecccCCCCCCCCCccCCCccccCC
Q 005060 309 AEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIE 382 (716)
Q Consensus 309 ~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~~~RVSPWeIEpv~ 382 (716)
|-..|++|+++-.++ + | .++|-++|.+|... ....|..++. ..+.|..=+|.|++
T Consensus 3 ~~~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG-----~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDG-----VVQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTS-----CEEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCC-----ceEEEeHHHcccCC
Confidence 456899999999999 2 2 58999999999972 4588999987 34455544544443
No 17
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=43.88 E-value=1.4e+02 Score=28.65 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCCCCEEEE-EEc--CCCcEEEEEEEeccccCCCCcccc-cccccccchhHHHHHHHhcCCeEEEEEecCCC------CC
Q 005060 227 LVAGDVCIF-LRG--GDGELRVGVRRAMKLQNNASTSVI-SSLSMQHGILAGAFHAISTGTRFTVYYHPWTR------PA 296 (716)
Q Consensus 227 L~aGD~VvF-~R~--~~G~l~vGIRRa~~~~~~~p~sv~-s~~s~~~gvla~a~~a~~tg~~F~V~Y~Pr~s------~~ 296 (716)
.+.||.|.+ |.. .+|+.+-.-+. ..|.... ....+-.| +.+|......|..++|..-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS------SSCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC------CcCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 567899887 332 57776544321 0222221 11222223 56677777788888888766432 23
Q ss_pred ceEEehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 297 EFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 297 EFvV~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
-+.|+++.+... ..+.+||+|.+. +++- . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV--DELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS--SCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc--cCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 468888888642 479999999854 3332 3 6899999876
No 18
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=41.47 E-value=45 Score=32.83 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCCCCEEEEE-E--cCCCcEEEEEEEeccccCCCCccccc-ccccccchhHHHHHHHhcCCeEEEEEecCC------CCC
Q 005060 227 LVAGDVCIFL-R--GGDGELRVGVRRAMKLQNNASTSVIS-SLSMQHGILAGAFHAISTGTRFTVYYHPWT------RPA 296 (716)
Q Consensus 227 L~aGD~VvF~-R--~~~G~l~vGIRRa~~~~~~~p~sv~s-~~s~~~gvla~a~~a~~tg~~F~V~Y~Pr~------s~~ 296 (716)
.+.||.|.+. . ..+|+.+-.-+. ..|...+- ...+-. -+++|......|..++|+.-|-. .-.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vip-G~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCH-HHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688998873 3 357765543321 12322221 122222 25566666778888888876532 234
Q ss_pred ceEEehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 297 EFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 297 EFvV~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
=+.|+++.+.. ...+.+||+|.+. +++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~~--~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEEE--ETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEEE--CCCC---cEEEEEEEEcC
Confidence 57888888753 2478999999754 4332 57889988876
No 19
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=38.26 E-value=8.9 Score=30.00 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.2
Q ss_pred cEEEEecCCCCeEEc
Q 005060 665 FHIAYMDDEGDMMLV 679 (716)
Q Consensus 665 ~~v~Y~D~eGD~mlv 679 (716)
-.|+|+|.+|+|=.-
T Consensus 19 c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 19 TKVEYTDASGQWGVQ 33 (46)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred ceEEEEcCCCccccC
Confidence 359999999999654
No 20
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=36.77 E-value=29 Score=31.40 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=49.0
Q ss_pred ehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeecCCCCCCCCCcccceeeecccCCCCCCCCCccCCCcccc
Q 005060 301 PFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEP 380 (716)
Q Consensus 301 ~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~~~RVSPWeIEp 380 (716)
+.+.|-.-+..+.+||||+||.=+-|+-+. -=.|++. ++. +-. | ..||.|... . +.-.|+-=.||.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~Gl--~-----~vQv~W~~~-G---~TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NGV--P-----PVQVFWEST-G---RTYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TTS--S-----EEEEEETTT-T---EEEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-CCC--c-----cceeeehhc-C---ceEEEEeehhhh
Confidence 477888999999999999999876665443 3468877 432 322 2 899999977 2 334555556777
Q ss_pred CCCCC
Q 005060 381 IERTH 385 (716)
Q Consensus 381 v~~~~ 385 (716)
+..+.
T Consensus 76 lg~~~ 80 (105)
T 2jng_A 76 LGFEE 80 (105)
T ss_dssp CCCCC
T ss_pred cCCcc
Confidence 76544
No 21
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=34.08 E-value=2.7e+02 Score=25.82 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=64.0
Q ss_pred cCCCCCCCEEEEE-Ec--C-CCcEEEEEEEeccccCCCCccccc-ccccccchhHHHHHHHhcCCeEEEEEecCC-----
Q 005060 224 SKKLVAGDVCIFL-RG--G-DGELRVGVRRAMKLQNNASTSVIS-SLSMQHGILAGAFHAISTGTRFTVYYHPWT----- 293 (716)
Q Consensus 224 ~K~L~aGD~VvF~-R~--~-~G~l~vGIRRa~~~~~~~p~sv~s-~~s~~~gvla~a~~a~~tg~~F~V~Y~Pr~----- 293 (716)
.+..+.||.|.+. .. . +|+.+-.-+. ..|....- ...+-.| +++|......|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3456789998874 32 4 7776543321 12222221 1122222 4666667778888888876532
Q ss_pred -CCCceEEehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 294 -RPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 294 -s~~EFvV~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
.-.-+.|+++.+ . ...+.+||+|.+.-+ + .....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~~~--~--G~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQTE--D--NQTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEEET--T--TEEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEECC--C--CCEEEEEEEEECC
Confidence 234577888888 2 357999999986543 3 2467899999976
No 22
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=33.46 E-value=1.6e+02 Score=28.28 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=65.1
Q ss_pred CCCCCCEEEEE-Ec--CCCcEEEEEEEeccccCCCCccccc-ccccccchhHHHHHHHhcCCeEEEEEecCCCCC-----
Q 005060 226 KLVAGDVCIFL-RG--GDGELRVGVRRAMKLQNNASTSVIS-SLSMQHGILAGAFHAISTGTRFTVYYHPWTRPA----- 296 (716)
Q Consensus 226 ~L~aGD~VvF~-R~--~~G~l~vGIRRa~~~~~~~p~sv~s-~~s~~~gvla~a~~a~~tg~~F~V~Y~Pr~s~~----- 296 (716)
..+.||.|.+. .. .+|+.+-.-+. .+.|....- ...+-. -+++|......|..++|..-|-..-.
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~-----~~~P~~f~lG~g~vip-G~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRN-----NGKPALFRLGDASLSE-GLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHH-----HTSCEEEETTSSSSCH-HHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCC-----CCCCEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57789999883 33 67876543211 112322221 111222 35677777788989999877643322
Q ss_pred -ceEEehhhHHhhhccCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 297 -EFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 297 -EFvV~~~ky~~A~~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
=+.|+++.+... ..+.+||+|.+.- ++ ...+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~--~~~~~G~~~~~~~--~~--G~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA--GEPEIGAIMLFTA--MD--GSEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT--CCCCTTCEEEEEC--TT--SCEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc--CCCCCCcEEEEEC--CC--CCEEEEEEEEEcC
Confidence 267888888643 4688999998643 33 2468899999986
No 23
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.78 E-value=51 Score=28.79 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccCCccccEEEEEecCCcccccceeEEEEeeecCCCCCCCCCcccceeeecccCCCCCCCCCccCCCccccCC
Q 005060 310 EIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIE 382 (716)
Q Consensus 310 ~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~~~RVSPWeIEpv~ 382 (716)
...|.+|+++-.++ + | .++|-++|++|... ..+.|.++++ ..+.|.+=+|.|++
T Consensus 19 ~~~f~vGd~VlArW-~-D--~~yYPAkI~sV~~~----------~~YtV~F~DG-----~~etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDG-----VVQTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTS-----CEEEEEGGGEEECC
T ss_pred CcccccCCEEEEEe-C-C--CCEeeEEEEEECCC----------CeEEEEEeCC-----CeEEecHHHcccCC
Confidence 46899999999999 2 2 58999999999972 3589999987 33455555555543
No 24
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=28.18 E-value=39 Score=28.43 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=29.8
Q ss_pred chheecCCCCCCCEEEEEEc-CCCcEEEEEEEecc
Q 005060 219 SVFVTSKKLVAGDVCIFLRG-GDGELRVGVRRAMK 252 (716)
Q Consensus 219 s~FV~~K~L~aGD~VvF~R~-~~G~l~vGIRRa~~ 252 (716)
.+++++-+|+.||.+...-+ .+|++.+..+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 38999999999999999876 58889999999765
No 25
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=25.06 E-value=78 Score=24.93 Aligned_cols=29 Identities=7% Similarity=0.252 Sum_probs=24.2
Q ss_pred cCCccccEEEEEecCCcccccceeEEEEeeec
Q 005060 311 IDYSIGTRFRMVFEGEECADQRIAGTVVGTED 342 (716)
Q Consensus 311 ~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~ 342 (716)
..|.+|+.+...|.. | ..||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~-D--g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSE-D--GCIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTT-T--SCEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECC-C--CCEEEEEEEEEcC
Confidence 479999999999953 3 4799999999965
No 26
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=22.21 E-value=97 Score=29.07 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCEEEEEEEEe---------CCCCceee--ccccchheecCCCCCCCEEEE
Q 005060 186 LQELVAKDLHGLEWRFRHIYR---------GQPKRHLL--TSGWSVFVTSKKLVAGDVCIF 235 (716)
Q Consensus 186 ~q~L~~~D~~G~~W~Fr~~yr---------g~prr~~L--TtGWs~FV~~K~L~aGD~VvF 235 (716)
..++.+.|..|++=....--. ..+-+|+| ..||. .+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 467888888888766643211 11336888 67876 7889999999875
No 27
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=57 Score=31.45 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEEEcCCCcEEEEE
Q 005060 225 KKLVAGDVCIFLRGGDGELRVGV 247 (716)
Q Consensus 225 K~L~aGD~VvF~R~~~G~l~vGI 247 (716)
..|.+||.|-|++..+|+|.+.|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 45689999999999999999987
No 28
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.34 E-value=84 Score=26.48 Aligned_cols=40 Identities=8% Similarity=0.183 Sum_probs=32.3
Q ss_pred ccCCccccEEEEEecCCcccccceeEEEEeeecCCCCCCCCCcccceeeecccC
Q 005060 310 EIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDAT 363 (716)
Q Consensus 310 ~~~w~~GmRFkM~fE~ed~~~~~~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~ 363 (716)
...|.+|+++.-+|. | ..||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws--D--g~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--D--CRYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS--S--SSEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC--C--CCEEEEEEEEECC-------C---CEEEEEEecC
Confidence 468999999999996 3 5799999999965 1 3568888876
Done!