BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005066
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 358 bits (918), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 268/429 (62%), Gaps = 16/429 (3%)
Query: 214 QPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTML 273
+PS F DV G +EA +EL+E+V +L+DP +F R T+L
Sbjct: 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLL 65
Query: 274 ARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN 333
ARA+AGEA VPFF SGS+F E+FVGVGA RVRDLF+ AK +PCI+FIDEIDA+G R
Sbjct: 66 ARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125
Query: 334 PK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 390
+ TLNQLLVE+DGF EGIIV+AATN P+ LD AL+RPGRFD+ IVV
Sbjct: 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 391 PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVT 450
PD+ GR++I+E H A+DV+L IIA+ TPGF GADL NLVN +T
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKIT 245
Query: 451 MADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGM 510
M D E A D+++ G RKS +IS +++ A+HE GHA+V+ PVH+ +I+PRG
Sbjct: 246 MKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGY 305
Query: 511 -SLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLA 569
+LG LP++D+ +SR ++L +L +GGR AEE++FG +VTSGA++D+++AT++A
Sbjct: 306 KALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIA 363
Query: 570 RAMVTKYGMSKEVGVVTHNYDDN----GKSM------STETRLLIEKEVRNFLDRAYNNA 619
R MV + GMS+E+G + ++ GK + S E I++EV+ + Y A
Sbjct: 364 RNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERA 423
Query: 620 KTILTMHSK 628
K I+ + K
Sbjct: 424 KEIIRKYRK 432
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 358 bits (918), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 268/429 (62%), Gaps = 16/429 (3%)
Query: 214 QPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTML 273
+PS F DV G +EA +EL+E+V +L+DP +F R T+L
Sbjct: 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLL 65
Query: 274 ARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN 333
ARA+AGEA VPFF SGS+F E+FVGVGA RVRDLF+ AK +PCI+FIDEIDA+G R
Sbjct: 66 ARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125
Query: 334 PK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 390
+ TLNQLLVE+DGF EGIIV+AATN P+ LD AL+RPGRFD+ IVV
Sbjct: 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 391 PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVT 450
PD+ GR++I+E H A+DV+L IIA+ TPGF GADL NLVN +T
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKIT 245
Query: 451 MADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGM 510
M D E A D+++ G RKS +IS +++ A+HE GHA+V+ PVH+ +I+PRG
Sbjct: 246 MKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGY 305
Query: 511 -SLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLA 569
+LG LP++D+ +SR ++L +L +GGR AEE++FG +VTSGA++D+++AT++A
Sbjct: 306 KALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIA 363
Query: 570 RAMVTKYGMSKEVGVVTHNYDDN----GKSM------STETRLLIEKEVRNFLDRAYNNA 619
R MV + GMS+E+G + ++ GK + S E I++EV+ + Y A
Sbjct: 364 RNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERA 423
Query: 620 KTILTMHSK 628
K I+ + K
Sbjct: 424 KEIIRKYRK 432
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 191/414 (46%), Positives = 261/414 (63%), Gaps = 19/414 (4%)
Query: 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAG 282
F DV G +EAK+EL+EIV +L++P RF T LARA+AGEA
Sbjct: 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89
Query: 283 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-----KDQ 337
VPF + SGS+F EMFVGVGA RVRDLF AK+ +PCI+FIDEIDA+G R D+
Sbjct: 90 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE 149
Query: 338 QYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 397
+ + TLNQLLVE+DGF+++ I+V+AATN P+ LD AL+RPGRFDR I + PDV+GR
Sbjct: 150 R--EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 207
Query: 398 QIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEYA 457
QI+ H A+DVDL ++A+ TPGF GADL NL+N +TM DLE A
Sbjct: 208 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 267
Query: 458 KDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQ 517
D++MM +KS V+S R++TA+HE GHAL A + A VHK TIVPRG +LG +
Sbjct: 268 ADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFM-- 325
Query: 518 LPDK-DETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKY 576
+P + D SRK++L ++ V + GR AEE++F ++VT+GA +D +QAT+LAR M+T++
Sbjct: 326 MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELARRMITEW 383
Query: 577 GMSKEVGVVTHNYDDNG-------KSMSTETRLLIEKEVRNFLDRAYNNAKTIL 623
GM E G V + ++ + S ET I++ VR ++ Y K +L
Sbjct: 384 GMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALL 437
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 191/414 (46%), Positives = 261/414 (63%), Gaps = 19/414 (4%)
Query: 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAG 282
F DV G +EAK+EL+EIV +L++P RF T LARA+AGEA
Sbjct: 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98
Query: 283 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-----KDQ 337
VPF + SGS+F EMFVGVGA RVRDLF AK+ +PCI+FIDEIDA+G R D+
Sbjct: 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE 158
Query: 338 QYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 397
+ + TLNQLLVE+DGF+++ I+V+AATN P+ LD AL+RPGRFDR I + PDV+GR
Sbjct: 159 R--EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216
Query: 398 QIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEYA 457
QI+ H A+DVDL ++A+ TPGF GADL NL+N +TM DLE A
Sbjct: 217 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
Query: 458 KDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQ 517
D++MM +KS V+S R++TA+HE GHAL A + A VHK TIVPRG +LG +
Sbjct: 277 ADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFM-- 334
Query: 518 LPDK-DETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKY 576
+P + D SRK++L ++ V + GR AEE++F ++VT+GA +D +QAT+LAR M+T++
Sbjct: 335 MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELARRMITEW 392
Query: 577 GMSKEVGVVTHNYDDNG-------KSMSTETRLLIEKEVRNFLDRAYNNAKTIL 623
GM E G V + ++ + S ET I++ VR ++ Y K +L
Sbjct: 393 GMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALL 446
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 169/250 (67%), Gaps = 3/250 (1%)
Query: 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAG 279
T F+DV G DEAK+E+ E+V YLR+P RF + T+LA+AIAG
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 280 EAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---D 336
EA VPFF+ SGS+F EMFVGVGA RVRD+F AKK +PCIIFIDEIDA+G R
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 337 QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 396
+ TLNQ+LVE+DGF+ NEGIIVIAATN P+ LD AL+RPGRFDR +VV PDV GR
Sbjct: 128 HDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187
Query: 397 RQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEY 456
QI++ HM +V A D+D IIARGTPGFSGADLANLVN V+M + E
Sbjct: 188 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 247
Query: 457 AKDKIMMGSE 466
AKDKIMMG E
Sbjct: 248 AKDKIMMGLE 257
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 162/258 (62%), Gaps = 9/258 (3%)
Query: 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAI 277
+ N +F D+ G +EAK+E+ EIV +L+ P+R+ T+LA+A+
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 278 AGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR----- 332
AGEA VPFFS GS F EMFVG+GA RVRDLF AKK++P IIFIDEIDAIG SR
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 333 -NPKDQQYMKMTLNQLLVELDGF-KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 390
+ D++ + TLNQLL E+DGF +N +IV+AATN PE LD AL+RPGRFDR ++V
Sbjct: 125 VSGNDER--EQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 391 PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVT 450
PD GR +I++ H+ V A+DV+L +A+ T G +GADLAN++N V
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 451 MADLEYAKDKIMMGSERK 468
L+ A ++ + G E+K
Sbjct: 243 QQHLKEAVERGIAGLEKK 260
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 205 bits (521), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAG 282
F DV G +EAK+EL+EIV +L++P RF T LARA+AGEA
Sbjct: 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98
Query: 283 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG---GSRNPKDQQY 339
VPF + SGS+F EMFVGVGA RVRDLF AK+ +PCI+FIDEIDA+G GS
Sbjct: 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE 158
Query: 340 MKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399
+ TLNQLLVE+DGF+++ I+V+AATN P+ LD AL+RPGRFDR I + PDV+GR QI
Sbjct: 159 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
Query: 400 MESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEYA 457
+ H A+DVDL ++A+ TPGF GADL NL+N +TM DLE A
Sbjct: 219 LRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAG 282
F DV G +EAK+EL+EIV +L++P RF T LARA+AGEA
Sbjct: 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74
Query: 283 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG---GSRNPKDQQY 339
VPF + SGS+F EMFVGVGA RVRDLF AK+ +PCI+FIDEIDA+G GS
Sbjct: 75 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE 134
Query: 340 MKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399
+ TLNQLLVE+DGF+++ I+V+AATN P+ LD AL+RPGRFDR I + PDV+GR QI
Sbjct: 135 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194
Query: 400 MESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEYA 457
+ H A+DVDL ++A+ TPGF GADL NL+N +TM DLE A
Sbjct: 195 LRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 154/261 (59%), Gaps = 14/261 (5%)
Query: 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAG 282
F DV G+ EAK E+ E V YL+ P+RF + T+LA+A+A EA
Sbjct: 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64
Query: 283 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR--------NP 334
VPF + +G+EF E+ G+GA RVR LF A+ R+PCI++IDEIDA+G R N
Sbjct: 65 VPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNT 124
Query: 335 KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVE 394
+++Q TLNQLLVE+DG + +IV+A+TN + LD AL+RPGR DRH+ + P ++
Sbjct: 125 EEEQ----TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 395 GRRQIMESHMS--KVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMA 452
RR+I E H+ K+ ++ +A TPGFSGAD+AN+ N V
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 453 DLEYAKDKIMMGSERKSAVIS 473
+ EYA ++++ G+ +KS ++S
Sbjct: 241 NFEYAVERVLAGTAKKSKILS 261
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAI 277
N ++ D+ G+++ QE+ E+V L+ P+ F + T+LA+A+
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 278 AGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK-- 335
A E F GSE + F+G GA V+D+F AK+++P IIFIDEIDAI R
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 336 -DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVE 394
+ ++ TL QLL E+DGF + +I ATN P+ LD A++RPGRFDR I VP PD +
Sbjct: 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191
Query: 395 GRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADL 454
GR +I++ H K+ A+DV+L IA+ T G GA+L + VTM D
Sbjct: 192 GRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDF 251
Query: 455 EYAKDKIM 462
A +KIM
Sbjct: 252 RKAVEKIM 259
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 4/216 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G+++ K+EL+E+V Y + P +F + T+LA+AIA E
Sbjct: 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
F S G E M+ G VR++F A++ +PC++F DE+D+I +R
Sbjct: 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 595
Query: 342 M---TLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
+NQ+L E+DG + + +I ATN P+ +D A++RPGR D+ I +P PD + R
Sbjct: 596 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 399 IMESHMSKVLKADDVDLMIIARGTPGFSGADLANLV 434
I+++++ K A DVDL +A+ T GFSGADL +
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 4/216 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G+++ K+EL+E+V Y + P +F + T+LA+AIA E
Sbjct: 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
F S G E M+ G VR++F A++ +PC++F DE+D+I +R
Sbjct: 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 595
Query: 342 M---TLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
+NQ+L E+DG + + +I ATN P+ +D A++RPGR D+ I +P PD + R
Sbjct: 596 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 399 IMESHMSKVLKADDVDLMIIARGTPGFSGADLANLV 434
I+++++ K A DVDL +A+ T GFSGADL +
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ DV G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 119/217 (54%), Gaps = 4/217 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G+++ K+EL+E+V Y + P +F + T+LA+AIA E
Sbjct: 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
F S G E M+ G VR++F A++ +PC++F DE+D+I +R
Sbjct: 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133
Query: 342 M---TLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
+NQ+L E+DG + + +I ATN P+ +D A++RPGR D+ I +P PD + R
Sbjct: 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193
Query: 399 IMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
I+++++ K A DVDL +A+ T GFSGADL +
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 176/366 (48%), Gaps = 46/366 (12%)
Query: 93 PSLHSNQSALSEYVKALVKVDRLDDSELLKTLQKGIANSARDEESI-----GGISAFKNV 147
P ++ AL+++ + L++ R DD LK ++ I RD E + I A +++
Sbjct: 48 PEQEAHNKALNQFKRKLLEHRRYDDQ--LKQRRQNI----RDLEKLYDKTENDIKALQSI 101
Query: 148 GK---------PTKDGVLGTASAPIHMVAAEGGHFKEQLWRTIR-TIALGFLLISGVGAL 197
G+ + ++ +S P ++V + +L + +R T+ + L I +
Sbjct: 102 GQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRI--- 158
Query: 198 IEDRGISKGLGLHEEVQPSLESNTKFSD-------VKGVDEAKQELEEIVHY-LRDPKRF 249
L E P + + T F + G+ E +EL E++ L++P+ F
Sbjct: 159 -----------LPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207
Query: 250 TRXXXXXXXXXXXXXXXXXXXTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLF 309
R T+LA+A+A G F S + ++G AR +R++F
Sbjct: 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF 267
Query: 310 SAAKKRSPCIIFIDEIDAIGGSR---NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366
+ AK+ PCIIF+DE+DAIGG R + ++ TL +LL ++DGF +I AT
Sbjct: 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327
Query: 367 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFS 426
N P++LD AL+RPGR DR + +P P+ GR +I + H +KV K + D + + GF+
Sbjct: 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387
Query: 427 GADLAN 432
GAD+ N
Sbjct: 388 GADIRN 393
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 4/244 (1%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+SD+ G++ QE++E V L P+ + T+LA+A+A +
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR---NPKDQQ 338
F GSE + ++G G R R +F A + +P I+FIDEIDAIG R N ++
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 339 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
++ T+ +LL +LDGF + VI ATN E+LD AL+RPGR DR I+ NPD+ +++
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 399 IMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMADLEYAK 458
I+ H SK+ ++DV+L + SGAD+ + VT D + AK
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAK 420
Query: 459 DKIM 462
+++M
Sbjct: 421 ERVM 424
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 4/212 (1%)
Query: 223 FSDVKGVDEAKQEL-EEIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+SDV G+D+ +EL E IV ++ +F T+LARA A +
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ---Q 338
F + + +M++G GA+ VRD F+ AK+++P IIFIDE+DAIG R ++ +
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 339 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
++ T+ +LL +LDGF ++ + V+AATN + LD AL+R GR DR I P P + R Q
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 399 IMESHMSKVLKADDVDLMIIARGTPGFSGADL 430
I++ H K+ DD++ +AR T F+GA L
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQL 391
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 131/275 (47%), Gaps = 11/275 (4%)
Query: 207 LGLHEEVQPSL-------ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXX 258
L L + PS+ + + +SDV G + ++L E+V L P+RF
Sbjct: 185 LPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK 244
Query: 259 XXXXXXXXXXXXTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPC 318
T+ ARA+A F GSE + +VG GAR VR+LF A+ + C
Sbjct: 245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKAC 304
Query: 319 IIFIDEIDAIGGSR---NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 375
IIF DEIDA+GG+R ++ T+ +L+ +LDGF I V+ ATN P +LD A
Sbjct: 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPA 364
Query: 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
L+RPGR DR + PD+EGR I H + + +I+R P +GA+L ++
Sbjct: 365 LLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424
Query: 436 IXXXXXXXXXXXXVTMADLEYAKDKIMMGSERKSA 470
T D A DK++ G ++ S+
Sbjct: 425 EAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 459
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ DV G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ G + +++E+V LR P F T++ARA+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FF +G E G +R F A+K +P IIFIDE+DAI R + +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 342 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401
++QLL +DG KQ +IV+AATN P S+D AL R GRFDR + + PD GR +I++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 402 SHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435
H + ADDVDL +A T G GADLA L +
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
Query: 271 TMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGG 330
T+LARA+A F SG+E + ++G G+R VR+LF A++ +P IIF+DEID+IG
Sbjct: 196 TLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255
Query: 331 SR---NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIV 387
+R + ++ T+ +LL +LDGF+ ++ I +I ATN + LD AL+RPGR DR I
Sbjct: 256 TRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315
Query: 388 VPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXX 447
P P V R +I+ H K+ ++L +A G SGAD+ +
Sbjct: 316 FPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI 375
Query: 448 XVTMADLEYAKDKIM 462
VT D E A K+M
Sbjct: 376 HVTQEDFELAVGKVM 390
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 6/221 (2%)
Query: 220 NTKFSDVKGVDEAKQELE-EIVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIA 278
N ++D+ +++ ++EL I+ +R+P +F T+LA+A+A
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 279 GEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ 338
E+G+ F S G E M+VG R VR +F AK +PC+IF DE+DA+ R+ ++
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 339 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 398
+NQLL E+DG + + + ++AATN P+ +D A++RPGR D+ + V P R
Sbjct: 126 ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185
Query: 399 IMESHMSKVLKAD---DVDLMIIARG--TPGFSGADLANLV 434
I+++ K DV+L IA ++GADL+ LV
Sbjct: 186 ILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 7/219 (3%)
Query: 220 NTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIA 278
N K+SDV G++ AK+ L+E ++ ++ P FT + LA+A+A
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVA 188
Query: 279 GEAG-VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 337
EA FFS S S+ ++G + V++LF A++ P IIFIDEID++ GSR+ +
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 248
Query: 338 QYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 396
+ + + LV++ G N+GI+V+ ATN P LD A+ R RF++ I +P P+ R
Sbjct: 249 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 306
Query: 397 RQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLV 434
+ H+ + + D + R T G+SGAD++ +V
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 7/244 (2%)
Query: 220 NTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIA 278
+ ++DV G+D KQE+ E V L + + TML +A+A
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 279 GEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR----NP 334
F +GSEF ++G G R VRD+F A++ +P IIFIDE+D+I R
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 335 KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN-PDV 393
D++ ++ L +LL ++DGF Q+ + VI ATN ++LD AL+RPGR DR I P+ D
Sbjct: 288 SDREVQRI-LIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
Query: 394 EGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVTMAD 453
RR I + SK+ A + DL + SGA +A ++ + +D
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 406
Query: 454 LEYA 457
LE A
Sbjct: 407 LEEA 410
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 7/219 (3%)
Query: 220 NTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIA 278
N K+SDV G++ AK+ L+E ++ ++ P FT + LA+A+A
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 279 GEAG-VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 337
EA FFS S S+ ++G + V++LF A++ P IIFIDEID++ GSR+ +
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 126
Query: 338 QYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 396
+ + + LV++ G N+GI+V+ ATN P LD A+ R RF++ I +P P+ R
Sbjct: 127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHAR 184
Query: 397 RQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLV 434
+ + H+ + + D + R T G+SGAD++ +V
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 8/160 (5%)
Query: 472 ISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQM 531
IS + ++ A HE GHAL+ + +D VHK +I+PRGM+LG+ QLP +D+ +K +
Sbjct: 11 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 70
Query: 532 LARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDD 591
++ V +GGR AEE+ FG++ +T+GA +DLQ+AT LA MV+ +GMS +VG +
Sbjct: 71 YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVA 130
Query: 592 N------GKSMSTETRLL--IEKEVRNFLDRAYNNAKTIL 623
N ++ T LL I++EV+ + Y AK I+
Sbjct: 131 NPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIV 170
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 216 SLESNTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLA 274
S + N K+ DV G++ AK+ L+E ++ ++ P F + + LA
Sbjct: 19 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLA 77
Query: 275 RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334
+A+A EA FFS S S+ ++G + V+ LF+ A++ P IIFIDE+DA+ G+R
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 137
Query: 335 KDQQYMKMTLNQLLVELDGF-KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393
+ + + +LLV+++G ++G++V+ ATN P LD A+ R RF+R I +P PD+
Sbjct: 138 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 195
Query: 394 EGRRQIMESHMSK---VLKADDVDLMIIARGTPGFSGADLANLV 434
R + E ++ VL + D + T G+SG+D+A +V
Sbjct: 196 AARTTMFEINVGDTPCVLTKE--DYRTLGAMTEGYSGSDIAVVV 237
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 216 SLESNTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLA 274
S + N K+ DV G++ AK+ L+E ++ ++ P F + + LA
Sbjct: 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLA 101
Query: 275 RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334
+A+A EA FFS S S+ ++G + V+ LF+ A++ P IIFID++DA+ G+R
Sbjct: 102 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161
Query: 335 KDQQYMKMTLNQLLVELDGF-KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393
+ + + +LLV+++G ++G++V+ ATN P LD A+ R RF+R I +P PD+
Sbjct: 162 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 219
Query: 394 EGRRQIMESHM---SKVLKADDVDLMIIARGTPGFSGADLANLV 434
R + E ++ VL + D + T G+SG+D+A +V
Sbjct: 220 AARTTMFEINVGDTPSVLTKE--DYRTLGAMTEGYSGSDIAVVV 261
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 216 SLESNTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLA 274
S + N K+ DV G++ AK+ L+E ++ ++ P F + + LA
Sbjct: 28 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLA 86
Query: 275 RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334
+A+A EA FFS S S+ ++G + V+ LF+ A++ P IIFID++DA+ G+R
Sbjct: 87 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 146
Query: 335 KDQQYMKMTLNQLLVELDGF-KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393
+ + + +LLV+++G ++G++V+ ATN P LD A+ R RF+R I +P PD+
Sbjct: 147 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 204
Query: 394 EGRRQIMESHMSK---VLKADDVDLMIIARGTPGFSGADLANLV 434
R + E ++ VL + D + T G+SG+D+A +V
Sbjct: 205 AARTTMFEINVGDTPCVLTKE--DYRTLGAMTEGYSGSDIAVVV 246
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 216 SLESNTKFSDVKGVDEAKQELEE-IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLA 274
S + N K+ DV G++ AK+ L+E ++ ++ P F + + LA
Sbjct: 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLA 68
Query: 275 RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334
+A+A EA FFS S S+ ++G + V+ LF+ A++ P IIFID++DA+ G+R
Sbjct: 69 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 128
Query: 335 KDQQYMKMTLNQLLVELDGF-KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393
+ + + +LLV+++G ++G++V+ ATN P LD A+ R RF+R I +P PD+
Sbjct: 129 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 186
Query: 394 EGRRQIMESHMSK---VLKADDVDLMIIARGTPGFSGADLANLV 434
R + E ++ VL + D + T G+SG+D+A +V
Sbjct: 187 AARTTMFEINVGDTPCVLTKE--DYRTLGAMTEGYSGSDIAVVV 228
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 116/218 (53%), Gaps = 9/218 (4%)
Query: 222 KFSDVKGVDEAKQELEEIV--HYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAG 279
KF D+ G D AKQ L+EIV LR P+ FT TMLA+A+A
Sbjct: 113 KFDDIAGQDLAKQALQEIVILPSLR-PELFT-GLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 280 EAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQY 339
E+ FF+ S + +VG G + VR LF+ A++ P IIFID++D++ R +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 340 MKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 397
+ + L+E DG + ++ ++V+ ATN P+ LD+A++R RF + + V P+ E R
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 398 QIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLV 434
++++ + K +L +AR T G+SG+DL L
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 11/218 (5%)
Query: 223 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARAIAGEA 281
+ D+ GV+ AK ++EIV + + P FT T++ + IA ++
Sbjct: 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFT-GLRGPPKGILLFGPPGTGKTLIGKCIASQS 141
Query: 282 GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK 341
G FFS S S +VG G + VR LF+ A+ + P +IFIDEID++ R + + +
Sbjct: 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR 201
Query: 342 MTLNQLLVELDG--FKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399
+ LV+LDG + I+V+ ATN P+ +D+A R R + + +P P+ R+QI
Sbjct: 202 RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQI 259
Query: 400 MESHMSK---VLKADDVDLMIIARGTPGFSGADLANLV 434
+ + MSK L ++++ I + + FSGAD+ L
Sbjct: 260 VINLMSKEQCCLSEEEIEQ--IVQQSDAFSGADMTQLC 295
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 219 SNTKFSDVKGVDEAKQELEE--IVHYLRDPKRFTRXXXXXXXXXXXXXXXXXXXTMLARA 276
+ +++D+ G D AKQ L+E I+ +R P+ FT T+LARA
Sbjct: 16 AKVEWTDIAGQDVAKQALQEMVILPSVR-PELFT-GLRAPAKGLLLFGPPGNGKTLLARA 73
Query: 277 IAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 336
+A E F + S + +VG G + VR LF+ A+ P IIFIDE+D++ R+ +
Sbjct: 74 VATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE 133
Query: 337 QQYMKMTLNQLLVELDGFKQN---EGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393
+ + + LVE DG N + I+V+AATN P+ LD+A +R RF + + V PD
Sbjct: 134 HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDE 191
Query: 394 EGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANL 433
+ R ++ + K D + L +A+ T G+SG+DL L
Sbjct: 192 QTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 391 PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVT 450
PD+EGR I H + + +I+R P +GA+L ++ T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 451 MADLEYAKDKIMMGSERKSAV 471
D A DK++ G ++ S+
Sbjct: 68 EKDFLKAVDKVISGYKKFSST 88
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 289 SGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQY----- 339
S E E G A+ +R + A +K + C +FI+++DA G R QY
Sbjct: 68 SAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA-GAGRMGGTTQYTVNNQ 126
Query: 340 ------MKMTLNQLLVELDGF---KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVP 389
M + N V+L G ++N + +I N +L L+R GR ++ P
Sbjct: 127 MVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 185
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 389 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXX 448
P P+ E R I++ H K ++L IA PG SGA++ +
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 449 VTMADLEYAKDKI 461
VT D E A K+
Sbjct: 61 VTQEDFEXAVAKV 73
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 391 PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIXXXXXXXXXXXXVT 450
P+ E R I++ H K+ ++L IA PG SGA++ + VT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 451 MADLEYAKDKIM 462
D E A K+M
Sbjct: 71 QEDFEMAVAKVM 82
>pdb|3VDU|A Chain A, Structure Of Recombination Mediator Protein Recrk21g
Mutant
Length = 212
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADL 430
VR G I+ NPD+EG M +++K+LK V + IA G P G DL
Sbjct: 145 VRDGSVKEVILATNPDIEGEATAM--YIAKLLKPFGVKVTRIAHGIP--VGGDL 194
>pdb|3VDP|A Chain A, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|B Chain B, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|C Chain C, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|D Chain D, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
Length = 212
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADL 430
VR G I+ NPD+EG M +++K+LK V + IA G P G DL
Sbjct: 145 VRDGSVKEVILATNPDIEGEATAM--YIAKLLKPFGVKVTRIAHGIP--VGGDL 194
>pdb|3VE5|D Chain D, Structure Of Recombination Mediator Protein Recr16-196
Deletion Mutant
pdb|3VE5|A Chain A, Structure Of Recombination Mediator Protein Recr16-196
Deletion Mutant
Length = 194
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADL 430
VR G I+ NPD+EG M +++K+LK V + IA G P G DL
Sbjct: 127 VRDGSVKEVILATNPDIEGEATAM--YIAKLLKPFGVKVTRIAHGIP--VGGDL 176
>pdb|4G2C|A Chain A, Dyp2 From Amycolatopsis Sp. Atcc 39116
pdb|4G2C|B Chain B, Dyp2 From Amycolatopsis Sp. Atcc 39116
Length = 493
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 492 VHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCM--GGRVAEELIF 549
++ GA+PV +T + + G A + D+ + +I + + RL V G AE F
Sbjct: 24 LYFQGAMPVDLSTTLSWKSATGEAATMLDELQPNILKAHVRDRLTVLFLGFGDAAEARTF 83
Query: 550 --GENEVTSGASSDLQ--QATKLARAMVTKYGMSKEVGVVTHNY 589
G + + A + LQ +A KL +A+ T Y VG+ H Y
Sbjct: 84 LNGLSGLMKSARTHLQEVEAHKLTKAVGTPY---LGVGLTAHGY 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,185,674
Number of Sequences: 62578
Number of extensions: 676285
Number of successful extensions: 1724
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1612
Number of HSP's gapped (non-prelim): 45
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)