Query 005066
Match_columns 715
No_of_seqs 648 out of 3957
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 8E-129 2E-133 1045.5 46.0 589 67-656 118-736 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 2.7E-99 6E-104 850.8 41.1 479 177-656 95-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 8E-94 1.7E-98 817.5 43.6 442 216-660 303-754 (774)
4 CHL00176 ftsH cell division pr 100.0 1.4E-86 3E-91 766.7 49.9 478 177-656 127-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.5E-85 5.3E-90 762.7 50.6 439 218-656 146-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 2.9E-81 6.2E-86 711.3 50.5 434 218-653 49-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.5E-63 7.6E-68 519.6 24.5 298 154-465 87-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.9E-55 8.4E-60 527.2 27.7 308 249-581 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.2E-50 4.8E-55 449.3 23.1 245 218-462 428-675 (693)
10 KOG0727 26S proteasome regulat 100.0 3.7E-49 8E-54 395.8 21.3 306 152-463 89-398 (408)
11 KOG0726 26S proteasome regulat 100.0 1.2E-49 2.7E-54 405.8 16.2 321 139-465 97-430 (440)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-48 1E-52 424.6 23.8 245 219-463 506-771 (802)
13 KOG0651 26S proteasome regulat 100.0 2.9E-49 6.2E-54 407.0 11.7 354 99-462 6-374 (388)
14 KOG0729 26S proteasome regulat 100.0 7.4E-48 1.6E-52 388.8 18.8 262 207-468 153-425 (435)
15 KOG0728 26S proteasome regulat 100.0 1.5E-46 3.2E-51 376.7 21.4 246 219-464 142-391 (404)
16 KOG0652 26S proteasome regulat 100.0 1.8E-45 3.8E-50 370.7 19.8 245 218-462 165-413 (424)
17 PF01434 Peptidase_M41: Peptid 100.0 3.8E-45 8.2E-50 372.3 19.2 202 450-651 1-213 (213)
18 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-45 1E-49 401.0 21.2 227 218-444 184-414 (802)
19 PTZ00454 26S protease regulato 100.0 1.1E-43 2.4E-48 391.4 27.0 306 152-464 79-389 (398)
20 COG1223 Predicted ATPase (AAA+ 100.0 2E-43 4.2E-48 356.2 18.5 240 217-461 114-355 (368)
21 KOG0736 Peroxisome assembly fa 100.0 4.2E-42 9E-47 385.8 23.0 245 218-463 666-934 (953)
22 PTZ00361 26 proteosome regulat 100.0 1.6E-41 3.4E-46 377.0 26.8 305 153-464 118-427 (438)
23 KOG0738 AAA+-type ATPase [Post 100.0 4.1E-42 8.8E-47 362.7 20.7 243 218-463 206-471 (491)
24 PRK03992 proteasome-activating 100.0 2.7E-40 5.8E-45 365.1 26.0 250 218-467 125-378 (389)
25 COG0464 SpoVK ATPases of the A 100.0 3.3E-39 7.1E-44 367.1 24.5 245 218-462 236-484 (494)
26 KOG0735 AAA+-type ATPase [Post 100.0 6E-39 1.3E-43 357.4 21.5 228 217-444 660-888 (952)
27 KOG0737 AAA+-type ATPase [Post 100.0 9.7E-39 2.1E-43 337.5 20.0 225 218-444 86-314 (386)
28 TIGR01243 CDC48 AAA family ATP 100.0 2E-38 4.2E-43 376.1 25.0 245 219-463 448-712 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 4.9E-38 1.1E-42 353.7 25.0 241 218-463 222-465 (489)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-37 3.8E-42 340.1 25.6 244 218-461 116-363 (364)
31 KOG0739 AAA+-type ATPase [Post 100.0 2.3E-38 5E-43 324.3 12.7 223 218-443 127-352 (439)
32 TIGR03689 pup_AAA proteasome A 100.0 2.8E-35 6.1E-40 331.3 24.6 260 218-477 176-494 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 7E-33 1.5E-37 309.6 19.9 241 219-467 180-422 (693)
34 PLN00020 ribulose bisphosphate 100.0 4.4E-32 9.4E-37 289.8 22.7 260 220-492 111-394 (413)
35 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-32 8.5E-37 322.4 24.4 247 219-465 173-439 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 1.9E-32 4.1E-37 321.1 18.8 252 216-467 257-531 (1080)
37 KOG0741 AAA+-type ATPase [Post 100.0 1.6E-32 3.5E-37 298.2 14.3 247 217-463 212-492 (744)
38 KOG0740 AAA+-type ATPase [Post 100.0 1.7E-31 3.7E-36 291.4 15.1 243 218-463 147-406 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 3.4E-21 7.5E-26 204.8 20.5 222 224-454 23-271 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 7.2E-21 1.6E-25 199.7 20.8 212 222-443 4-240 (261)
41 KOG0742 AAA+-type ATPase [Post 99.9 6E-21 1.3E-25 203.3 20.0 228 219-457 350-608 (630)
42 PF00004 AAA: ATPase family as 99.9 1.2E-21 2.6E-26 181.8 12.1 130 260-390 1-132 (132)
43 TIGR02880 cbbX_cfxQ probable R 99.9 1.1E-20 2.4E-25 200.8 20.4 210 225-443 23-255 (284)
44 KOG0743 AAA+-type ATPase [Post 99.9 5.4E-21 1.2E-25 208.1 15.8 205 219-433 196-412 (457)
45 KOG0736 Peroxisome assembly fa 99.8 1.1E-18 2.3E-23 198.0 19.0 222 238-462 412-654 (953)
46 KOG0744 AAA+-type ATPase [Post 99.8 1.1E-18 2.3E-23 182.2 14.5 230 223-459 141-412 (423)
47 PF05496 RuvB_N: Holliday junc 99.8 4.8E-18 1.1E-22 172.1 18.1 190 219-437 19-225 (233)
48 PRK00080 ruvB Holliday junctio 99.8 7.9E-18 1.7E-22 182.4 20.6 214 219-461 20-250 (328)
49 TIGR00635 ruvB Holliday juncti 99.8 9E-18 2E-22 179.5 20.7 210 222-460 2-228 (305)
50 COG0464 SpoVK ATPases of the A 99.8 9.6E-18 2.1E-22 191.3 21.3 219 243-463 4-228 (494)
51 TIGR02639 ClpA ATP-dependent C 99.8 1.1E-17 2.3E-22 199.1 19.3 221 220-462 178-430 (731)
52 KOG0735 AAA+-type ATPase [Post 99.8 1.8E-17 4E-22 186.5 19.1 260 224-493 408-683 (952)
53 TIGR00763 lon ATP-dependent pr 99.8 1.9E-17 4E-22 198.1 19.8 165 224-405 320-506 (775)
54 PRK11034 clpA ATP-dependent Cl 99.7 4.6E-17 9.9E-22 192.5 20.1 221 221-463 183-435 (758)
55 COG2255 RuvB Holliday junction 99.7 3.1E-16 6.7E-21 161.9 19.5 216 219-463 21-253 (332)
56 TIGR02902 spore_lonB ATP-depen 99.7 3E-16 6.5E-21 180.2 17.5 212 218-460 59-331 (531)
57 TIGR02928 orc1/cdc6 family rep 99.7 2.6E-15 5.5E-20 164.4 23.8 223 220-461 11-274 (365)
58 PRK14962 DNA polymerase III su 99.7 1.1E-15 2.4E-20 172.7 21.0 203 219-459 9-240 (472)
59 COG2256 MGS1 ATPase related to 99.7 9.2E-16 2E-20 165.1 18.7 202 220-462 20-239 (436)
60 PRK12323 DNA polymerase III su 99.7 7.6E-16 1.6E-20 176.2 17.8 202 218-457 10-245 (700)
61 TIGR03345 VI_ClpV1 type VI sec 99.7 1.3E-15 2.9E-20 183.0 20.8 216 220-457 183-427 (852)
62 PRK07003 DNA polymerase III su 99.7 1.8E-15 3.9E-20 175.1 19.4 202 218-457 10-240 (830)
63 PRK04195 replication factor C 99.7 2.3E-15 5E-20 171.4 20.1 207 218-458 8-222 (482)
64 PRK14956 DNA polymerase III su 99.7 2.4E-15 5.3E-20 168.3 19.6 203 218-458 12-243 (484)
65 PRK14961 DNA polymerase III su 99.7 4.5E-15 9.7E-20 163.2 20.7 203 218-458 10-241 (363)
66 PRK13342 recombination factor 99.7 8.3E-15 1.8E-19 163.8 23.0 201 219-462 7-220 (413)
67 PRK00149 dnaA chromosomal repl 99.7 5E-15 1.1E-19 167.3 21.3 221 218-462 116-350 (450)
68 PRK14960 DNA polymerase III su 99.6 3.9E-15 8.5E-20 170.8 19.7 203 218-458 9-240 (702)
69 TIGR00362 DnaA chromosomal rep 99.6 9.9E-15 2.1E-19 162.7 21.9 220 218-462 104-338 (405)
70 PRK00411 cdc6 cell division co 99.6 1.5E-14 3.3E-19 160.0 22.9 224 220-461 26-282 (394)
71 PRK14958 DNA polymerase III su 99.6 4.2E-15 9.1E-20 169.6 18.7 203 218-458 10-241 (509)
72 PRK07764 DNA polymerase III su 99.6 2.8E-14 6E-19 170.2 26.0 204 218-458 9-243 (824)
73 PRK06645 DNA polymerase III su 99.6 8E-15 1.7E-19 166.6 20.3 212 218-458 15-253 (507)
74 PRK07994 DNA polymerase III su 99.6 9E-15 2E-19 169.6 20.1 203 218-458 10-241 (647)
75 PRK08691 DNA polymerase III su 99.6 8.9E-15 1.9E-19 169.2 19.6 204 218-459 10-242 (709)
76 PRK14088 dnaA chromosomal repl 99.6 1.5E-14 3.3E-19 162.7 20.5 223 218-463 99-334 (440)
77 PRK14949 DNA polymerase III su 99.6 1.4E-14 3E-19 170.7 20.3 209 218-458 10-241 (944)
78 PRK10865 protein disaggregatio 99.6 4.7E-15 1E-19 178.7 15.9 166 220-407 174-357 (857)
79 PRK14964 DNA polymerase III su 99.6 1.7E-14 3.8E-19 162.8 19.3 203 218-458 7-238 (491)
80 PRK05563 DNA polymerase III su 99.6 2.7E-14 5.9E-19 164.9 20.5 203 218-458 10-241 (559)
81 CHL00095 clpC Clp protease ATP 99.6 1.6E-14 3.6E-19 173.9 19.1 201 221-443 176-403 (821)
82 PRK14951 DNA polymerase III su 99.6 2.8E-14 6E-19 165.2 20.0 203 218-458 10-246 (618)
83 PHA02544 44 clamp loader, smal 99.6 2.3E-14 5E-19 154.0 18.1 203 218-456 15-226 (316)
84 TIGR03346 chaperone_ClpB ATP-d 99.6 1.6E-14 3.4E-19 174.6 18.6 203 220-444 169-399 (852)
85 PRK12402 replication factor C 99.6 4.4E-14 9.6E-19 152.6 20.3 208 218-459 9-247 (337)
86 PRK14963 DNA polymerase III su 99.6 2.8E-14 6E-19 162.7 19.4 202 218-458 8-237 (504)
87 PTZ00112 origin recognition co 99.6 5.6E-14 1.2E-18 163.3 22.0 216 224-463 755-1008(1164)
88 TIGR03420 DnaA_homol_Hda DnaA 99.6 3.9E-14 8.5E-19 144.5 18.3 205 219-458 10-225 (226)
89 PLN03025 replication factor C 99.6 4.1E-14 8.9E-19 152.9 19.3 200 218-457 7-219 (319)
90 PRK14959 DNA polymerase III su 99.6 3.8E-14 8.2E-19 163.3 19.7 203 218-458 10-241 (624)
91 PRK14969 DNA polymerase III su 99.6 2.9E-14 6.3E-19 163.6 18.5 203 218-458 10-241 (527)
92 TIGR02397 dnaX_nterm DNA polym 99.6 5.5E-14 1.2E-18 153.2 19.4 203 219-459 9-240 (355)
93 PRK14957 DNA polymerase III su 99.6 7.6E-14 1.6E-18 159.7 19.8 204 218-459 10-242 (546)
94 PRK14952 DNA polymerase III su 99.6 7.8E-14 1.7E-18 160.8 19.5 203 218-457 7-240 (584)
95 PRK06893 DNA replication initi 99.6 2.1E-13 4.5E-18 140.8 19.8 210 218-458 10-227 (229)
96 PRK14965 DNA polymerase III su 99.6 1.1E-13 2.3E-18 160.6 19.5 202 218-457 10-240 (576)
97 PRK08903 DnaA regulatory inact 99.6 1.7E-13 3.6E-18 140.7 18.8 202 218-459 12-224 (227)
98 PRK13341 recombination factor 99.6 1.6E-13 3.4E-18 162.0 20.8 208 219-461 23-247 (725)
99 PRK14086 dnaA chromosomal repl 99.6 2.3E-13 5E-18 156.2 21.5 221 218-463 282-517 (617)
100 PRK05896 DNA polymerase III su 99.6 1.5E-13 3.2E-18 157.8 19.7 202 218-457 10-240 (605)
101 PRK07940 DNA polymerase III su 99.5 6.5E-14 1.4E-18 155.1 15.9 184 222-432 3-213 (394)
102 PRK12422 chromosomal replicati 99.5 2.9E-13 6.4E-18 152.3 21.2 226 218-463 105-345 (445)
103 PRK14970 DNA polymerase III su 99.5 2.2E-13 4.8E-18 149.9 19.6 210 218-459 11-231 (367)
104 KOG2004 Mitochondrial ATP-depe 99.5 8.8E-14 1.9E-18 157.5 16.4 167 224-406 411-598 (906)
105 PRK07133 DNA polymerase III su 99.5 2.3E-13 5E-18 158.9 20.1 209 218-458 12-240 (725)
106 TIGR02903 spore_lon_C ATP-depe 99.5 3.5E-13 7.5E-18 157.4 21.6 315 220-572 150-540 (615)
107 PRK05342 clpX ATP-dependent pr 99.5 2E-13 4.3E-18 152.0 18.5 175 226-402 73-323 (412)
108 PRK10787 DNA-binding ATP-depen 99.5 1.2E-13 2.5E-18 164.8 17.6 217 224-458 322-579 (784)
109 PRK06305 DNA polymerase III su 99.5 3.1E-13 6.6E-18 152.5 20.1 202 219-458 12-243 (451)
110 PRK14953 DNA polymerase III su 99.5 3E-13 6.6E-18 153.6 20.1 209 218-458 10-241 (486)
111 PRK09111 DNA polymerase III su 99.5 3E-13 6.5E-18 156.7 20.1 209 218-458 18-254 (598)
112 COG0466 Lon ATP-dependent Lon 99.5 1.3E-13 2.8E-18 157.1 16.3 164 224-404 323-508 (782)
113 TIGR02640 gas_vesic_GvpN gas v 99.5 3.8E-13 8.1E-18 141.6 18.7 188 258-463 22-259 (262)
114 PRK14955 DNA polymerase III su 99.5 2.9E-13 6.2E-18 150.6 18.6 213 218-458 10-254 (397)
115 PRK14087 dnaA chromosomal repl 99.5 6E-13 1.3E-17 150.1 21.2 191 257-461 141-348 (450)
116 TIGR00390 hslU ATP-dependent p 99.5 2.5E-13 5.4E-18 149.3 17.4 174 225-400 13-342 (441)
117 PRK06647 DNA polymerase III su 99.5 3.8E-13 8.2E-18 155.2 19.1 203 218-458 10-241 (563)
118 COG1474 CDC6 Cdc6-related prot 99.5 1.2E-12 2.6E-17 143.8 21.9 216 225-461 18-265 (366)
119 PRK08084 DNA replication initi 99.5 1.3E-12 2.8E-17 135.4 20.0 206 218-458 16-233 (235)
120 PRK08451 DNA polymerase III su 99.5 6.4E-13 1.4E-17 151.5 19.0 202 218-457 8-238 (535)
121 KOG2028 ATPase related to the 99.5 2.1E-13 4.6E-18 144.5 13.9 204 220-460 134-367 (554)
122 PRK13407 bchI magnesium chelat 99.5 1.7E-13 3.8E-18 148.4 13.1 217 220-462 4-307 (334)
123 KOG0989 Replication factor C, 99.5 7E-13 1.5E-17 138.6 16.6 184 218-436 30-230 (346)
124 PRK05201 hslU ATP-dependent pr 99.5 2E-13 4.3E-18 150.2 12.7 175 225-401 16-345 (443)
125 PRK08727 hypothetical protein; 99.5 2.9E-12 6.2E-17 132.7 20.3 207 218-459 13-229 (233)
126 PRK00440 rfc replication facto 99.5 1.2E-12 2.6E-17 140.3 18.1 202 218-459 11-224 (319)
127 PRK14950 DNA polymerase III su 99.5 1.7E-12 3.6E-17 151.2 19.8 204 218-459 10-243 (585)
128 CHL00081 chlI Mg-protoporyphyr 99.5 6.5E-13 1.4E-17 144.5 15.2 220 219-464 12-325 (350)
129 PF05673 DUF815: Protein of un 99.5 2E-12 4.3E-17 133.0 17.5 164 219-409 22-212 (249)
130 PRK14948 DNA polymerase III su 99.5 2.2E-12 4.8E-17 150.4 20.1 205 219-456 11-240 (620)
131 PRK14954 DNA polymerase III su 99.5 2.2E-12 4.8E-17 149.9 19.9 213 218-458 10-254 (620)
132 TIGR00382 clpX endopeptidase C 99.4 1.8E-12 4E-17 143.8 17.1 216 225-442 78-385 (413)
133 PRK05642 DNA replication initi 99.4 5.6E-12 1.2E-16 130.6 19.3 211 218-458 13-232 (234)
134 PRK11034 clpA ATP-dependent Cl 99.4 9.5E-13 2.1E-17 156.1 14.5 165 226-407 460-669 (758)
135 COG2812 DnaX DNA polymerase II 99.4 2.1E-12 4.5E-17 145.9 15.9 208 218-457 10-240 (515)
136 PF00308 Bac_DnaA: Bacterial d 99.4 2.8E-12 6.1E-17 131.6 15.6 200 218-441 2-216 (219)
137 TIGR02639 ClpA ATP-dependent C 99.4 3.2E-12 6.9E-17 152.5 18.2 162 225-406 455-664 (731)
138 PRK14971 DNA polymerase III su 99.4 1E-11 2.2E-16 144.8 20.8 202 219-458 12-243 (614)
139 TIGR02030 BchI-ChlI magnesium 99.4 2.8E-12 6.2E-17 139.3 14.5 218 222-464 2-312 (337)
140 COG0593 DnaA ATPase involved i 99.4 1.6E-11 3.5E-16 135.2 20.3 228 217-466 80-318 (408)
141 cd00009 AAA The AAA+ (ATPases 99.4 6.8E-12 1.5E-16 116.3 14.5 121 256-389 18-150 (151)
142 PRK06620 hypothetical protein; 99.4 1.3E-11 2.7E-16 126.4 17.4 194 218-458 10-213 (214)
143 TIGR02442 Cob-chelat-sub cobal 99.4 4.3E-12 9.3E-17 149.0 15.2 214 222-463 2-306 (633)
144 COG1224 TIP49 DNA helicase TIP 99.4 2.5E-11 5.4E-16 129.0 18.9 128 317-461 292-432 (450)
145 TIGR01650 PD_CobS cobaltochela 99.4 2.7E-12 5.8E-17 137.9 10.9 138 257-405 64-234 (327)
146 TIGR00368 Mg chelatase-related 99.3 3.3E-11 7.2E-16 137.3 15.6 209 221-459 189-497 (499)
147 COG0542 clpA ATP-binding subun 99.3 1.4E-10 3E-15 135.9 20.0 215 220-456 166-408 (786)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 6.8E-11 1.5E-15 142.7 17.8 164 224-407 566-783 (852)
149 PRK09112 DNA polymerase III su 99.3 1E-10 2.3E-15 128.0 17.6 189 218-435 17-242 (351)
150 PRK13531 regulatory ATPase Rav 99.3 1.5E-10 3.2E-15 129.9 18.1 213 225-465 21-287 (498)
151 PF01078 Mg_chelatase: Magnesi 99.2 7.8E-12 1.7E-16 126.1 6.6 119 222-368 1-158 (206)
152 KOG1969 DNA replication checkp 99.2 1.8E-10 4E-15 131.4 18.2 212 217-445 264-519 (877)
153 PRK09087 hypothetical protein; 99.2 1E-10 2.2E-15 120.6 14.9 171 259-461 46-222 (226)
154 PRK10865 protein disaggregatio 99.2 1.7E-10 3.8E-15 139.5 19.0 168 223-407 567-782 (857)
155 COG3829 RocR Transcriptional r 99.2 1.7E-11 3.6E-16 137.1 9.4 209 218-455 239-491 (560)
156 PRK15424 propionate catabolism 99.2 4.9E-11 1.1E-15 136.8 13.3 209 220-455 215-479 (538)
157 PRK07471 DNA polymerase III su 99.2 1.8E-10 4E-15 126.7 17.2 160 218-404 13-213 (365)
158 TIGR03346 chaperone_ClpB ATP-d 99.2 1.3E-10 2.9E-15 140.8 17.5 199 224-438 565-822 (852)
159 CHL00095 clpC Clp protease ATP 99.2 1.9E-10 4E-15 139.1 18.6 167 224-407 509-735 (821)
160 COG1219 ClpX ATP-dependent pro 99.2 2.5E-11 5.3E-16 127.4 9.5 96 259-354 99-203 (408)
161 COG0714 MoxR-like ATPases [Gen 99.2 1E-10 2.2E-15 127.1 14.4 132 258-402 44-200 (329)
162 PHA02244 ATPase-like protein 99.2 2.9E-10 6.3E-15 123.7 17.3 130 258-400 120-269 (383)
163 COG0606 Predicted ATPase with 99.2 1.6E-11 3.4E-16 135.6 6.9 210 220-459 175-483 (490)
164 PRK05564 DNA polymerase III su 99.2 2.3E-10 4.9E-15 123.5 15.4 153 222-405 2-166 (313)
165 TIGR02329 propionate_PrpR prop 99.2 1.1E-10 2.4E-15 133.8 13.5 212 220-456 208-465 (526)
166 smart00382 AAA ATPases associa 99.2 5E-11 1.1E-15 109.2 8.6 126 257-391 2-147 (148)
167 smart00350 MCM minichromosome 99.2 2.1E-10 4.5E-15 131.7 14.9 219 225-461 204-504 (509)
168 TIGR00764 lon_rel lon-related 99.2 3.5E-10 7.6E-15 132.1 16.9 101 359-461 268-391 (608)
169 COG0542 clpA ATP-binding subun 99.2 1.5E-10 3.3E-15 135.6 13.0 164 224-407 491-708 (786)
170 TIGR02031 BchD-ChlD magnesium 99.2 2.8E-10 6.2E-15 132.5 15.2 190 259-463 18-260 (589)
171 PRK05022 anaerobic nitric oxid 99.2 2.2E-10 4.8E-15 131.6 14.0 194 222-442 185-421 (509)
172 COG2607 Predicted ATPase (AAA+ 99.2 1.4E-09 3E-14 110.7 17.9 164 219-409 55-244 (287)
173 PRK11331 5-methylcytosine-spec 99.2 3.5E-10 7.5E-15 126.0 14.2 141 223-390 174-357 (459)
174 PRK11608 pspF phage shock prot 99.1 3.2E-10 7E-15 123.2 13.3 193 222-441 4-240 (326)
175 TIGR00678 holB DNA polymerase 99.1 7.5E-10 1.6E-14 110.5 14.9 129 254-403 11-167 (188)
176 COG2204 AtoC Response regulato 99.1 5E-10 1.1E-14 125.2 14.8 206 220-455 137-385 (464)
177 TIGR03015 pepcterm_ATPase puta 99.1 2.8E-09 6.2E-14 111.6 19.7 189 259-461 45-266 (269)
178 TIGR00602 rad24 checkpoint pro 99.1 8.1E-10 1.7E-14 128.7 17.0 253 218-493 78-390 (637)
179 TIGR01817 nifA Nif-specific re 99.1 2.1E-10 4.6E-15 132.5 12.1 207 219-455 191-439 (534)
180 TIGR02974 phageshock_pspF psp 99.1 5.9E-10 1.3E-14 121.3 14.9 189 226-441 1-233 (329)
181 PRK09862 putative ATP-dependen 99.1 5.3E-10 1.1E-14 127.2 15.0 209 221-459 188-490 (506)
182 COG3604 FhlA Transcriptional r 99.1 3.8E-10 8.3E-15 124.9 12.8 200 218-441 217-456 (550)
183 PF07728 AAA_5: AAA domain (dy 99.1 1.2E-10 2.6E-15 110.1 7.4 113 259-382 1-139 (139)
184 COG0470 HolB ATPase involved i 99.1 2.2E-09 4.8E-14 115.1 17.3 149 225-401 2-178 (325)
185 PRK07399 DNA polymerase III su 99.1 9.2E-10 2E-14 118.9 14.4 183 222-435 2-223 (314)
186 COG1220 HslU ATP-dependent pro 99.1 4.1E-10 9E-15 119.1 11.3 134 317-462 251-404 (444)
187 PRK15429 formate hydrogenlyase 99.1 1.2E-09 2.6E-14 129.9 15.3 197 220-441 372-609 (686)
188 PRK11388 DNA-binding transcrip 99.1 1.4E-09 3E-14 128.4 15.6 209 220-458 321-568 (638)
189 PRK10820 DNA-binding transcrip 99.1 9.5E-10 2.1E-14 126.6 13.7 208 219-454 199-447 (520)
190 KOG1942 DNA helicase, TBP-inte 99.1 5E-09 1.1E-13 109.0 17.3 129 316-461 296-438 (456)
191 PTZ00111 DNA replication licen 99.1 2.1E-08 4.5E-13 119.5 24.9 352 259-657 494-897 (915)
192 COG1221 PspF Transcriptional r 99.0 7.2E-10 1.6E-14 122.0 10.8 198 219-443 73-311 (403)
193 PF05621 TniB: Bacterial TniB 99.0 1.2E-08 2.7E-13 108.2 19.4 215 225-457 35-285 (302)
194 PF07724 AAA_2: AAA domain (Cd 99.0 9.5E-10 2.1E-14 108.8 9.2 111 259-371 5-132 (171)
195 PF06068 TIP49: TIP49 C-termin 99.0 5.4E-09 1.2E-13 113.1 14.9 65 222-293 22-88 (398)
196 KOG0991 Replication factor C, 99.0 4.7E-09 1E-13 106.4 13.3 205 218-459 21-235 (333)
197 PRK08058 DNA polymerase III su 99.0 2.8E-09 6.2E-14 115.9 12.3 149 222-402 3-180 (329)
198 PRK04132 replication factor C 99.0 8.4E-09 1.8E-13 123.2 16.4 170 260-457 567-750 (846)
199 COG1239 ChlI Mg-chelatase subu 99.0 6.2E-09 1.3E-13 114.0 13.9 216 220-464 13-325 (423)
200 KOG0741 AAA+-type ATPase [Post 99.0 9.6E-09 2.1E-13 113.9 15.3 155 238-401 525-683 (744)
201 PRK05707 DNA polymerase III su 99.0 7E-09 1.5E-13 112.7 14.0 132 254-404 19-178 (328)
202 TIGR02915 PEP_resp_reg putativ 98.9 4.6E-09 9.9E-14 118.4 11.8 203 222-454 137-382 (445)
203 PRK08116 hypothetical protein; 98.9 6.1E-09 1.3E-13 110.2 10.2 163 220-402 81-258 (268)
204 PF00158 Sigma54_activat: Sigm 98.9 5.4E-09 1.2E-13 103.1 8.8 119 226-368 1-143 (168)
205 PRK10923 glnG nitrogen regulat 98.9 1.4E-08 3.1E-13 115.2 13.3 203 222-457 136-384 (469)
206 KOG1514 Origin recognition com 98.9 5.5E-08 1.2E-12 111.4 17.7 195 259-463 424-657 (767)
207 smart00763 AAA_PrkA PrkA AAA d 98.9 1.8E-08 4E-13 109.7 13.2 81 222-309 48-141 (361)
208 PRK12377 putative replication 98.9 2.2E-08 4.8E-13 104.7 13.1 101 257-369 101-206 (248)
209 KOG0745 Putative ATP-dependent 98.8 1E-08 2.3E-13 111.5 10.0 95 259-353 228-331 (564)
210 PF13177 DNA_pol3_delta2: DNA 98.8 2.8E-08 6.1E-13 97.4 11.5 133 228-390 1-160 (162)
211 PRK06964 DNA polymerase III su 98.8 2.7E-08 5.8E-13 108.6 11.8 135 253-403 17-203 (342)
212 PRK07952 DNA replication prote 98.8 4.6E-08 9.9E-13 102.1 12.7 132 219-369 67-205 (244)
213 KOG2227 Pre-initiation complex 98.8 1.7E-07 3.7E-12 103.4 17.5 203 224-445 150-383 (529)
214 PRK11361 acetoacetate metaboli 98.8 5.3E-08 1.2E-12 110.0 14.0 205 222-456 141-388 (457)
215 PF07726 AAA_3: ATPase family 98.8 4.5E-09 9.7E-14 98.4 3.3 109 259-382 1-129 (131)
216 KOG2680 DNA helicase TIP49, TB 98.8 3.3E-07 7.2E-12 96.0 17.3 92 369-463 339-431 (454)
217 PRK13765 ATP-dependent proteas 98.8 6.4E-08 1.4E-12 113.3 13.5 100 359-460 277-399 (637)
218 PRK08769 DNA polymerase III su 98.7 1.7E-07 3.7E-12 101.4 14.2 134 253-402 22-183 (319)
219 PRK08939 primosomal protein Dn 98.7 5.9E-08 1.3E-12 104.6 10.4 133 220-369 123-261 (306)
220 PF12775 AAA_7: P-loop contain 98.7 7.3E-08 1.6E-12 102.2 10.8 168 219-408 5-197 (272)
221 PRK08181 transposase; Validate 98.7 1E-07 2.2E-12 100.9 11.6 100 257-369 106-209 (269)
222 PRK06871 DNA polymerase III su 98.7 2E-07 4.4E-12 101.0 14.2 131 253-403 20-178 (325)
223 TIGR01818 ntrC nitrogen regula 98.7 1.2E-07 2.7E-12 107.3 12.4 212 223-458 133-381 (463)
224 PRK13406 bchD magnesium chelat 98.7 8.1E-08 1.8E-12 111.5 10.8 189 258-463 26-252 (584)
225 PF14532 Sigma54_activ_2: Sigm 98.7 2.8E-08 6E-13 94.4 5.5 105 227-367 1-108 (138)
226 PRK15115 response regulator Gl 98.7 2.4E-07 5.2E-12 104.4 14.0 177 258-457 158-380 (444)
227 PRK07993 DNA polymerase III su 98.6 4.9E-07 1.1E-11 98.6 15.7 131 253-402 20-178 (334)
228 PRK06526 transposase; Provisio 98.6 9.3E-08 2E-12 100.4 9.3 101 256-369 97-201 (254)
229 KOG0990 Replication factor C, 98.6 3.7E-07 8E-12 96.7 12.8 212 218-465 35-276 (360)
230 PRK06090 DNA polymerase III su 98.6 5.9E-07 1.3E-11 97.2 14.2 131 253-402 21-178 (319)
231 PF01637 Arch_ATPase: Archaeal 98.6 5.2E-07 1.1E-11 91.2 11.9 164 257-430 20-231 (234)
232 PRK10365 transcriptional regul 98.5 5.6E-07 1.2E-11 101.1 13.2 199 225-456 140-384 (441)
233 PRK06835 DNA replication prote 98.5 4.9E-07 1.1E-11 98.3 12.0 100 258-369 184-289 (329)
234 PF03215 Rad17: Rad17 cell cyc 98.5 1.4E-06 3.1E-11 100.0 16.1 205 218-442 13-269 (519)
235 COG1241 MCM2 Predicted ATPase 98.5 7.4E-07 1.6E-11 104.1 13.2 314 258-657 320-667 (682)
236 PRK08699 DNA polymerase III su 98.5 6.7E-07 1.5E-11 97.2 11.9 133 254-402 18-183 (325)
237 PF13173 AAA_14: AAA domain 98.5 8.5E-07 1.8E-11 83.2 10.7 118 258-395 3-126 (128)
238 PRK06921 hypothetical protein; 98.5 1.7E-06 3.6E-11 91.7 14.1 69 256-327 116-188 (266)
239 COG1484 DnaC DNA replication p 98.5 8.6E-07 1.9E-11 93.2 11.8 71 256-328 104-179 (254)
240 PF01695 IstB_IS21: IstB-like 98.5 2E-07 4.4E-12 92.8 6.2 101 256-369 46-150 (178)
241 KOG1051 Chaperone HSP104 and r 98.5 1E-06 2.2E-11 105.2 12.9 128 224-369 562-711 (898)
242 PRK09183 transposase/IS protei 98.5 5.2E-07 1.1E-11 95.1 9.0 71 257-328 102-176 (259)
243 TIGR02237 recomb_radB DNA repa 98.4 2.1E-06 4.6E-11 86.9 11.5 116 252-367 5-148 (209)
244 KOG1970 Checkpoint RAD17-RFC c 98.3 1.8E-05 3.9E-10 89.2 16.9 172 258-441 111-320 (634)
245 KOG0478 DNA replication licens 98.3 0.0001 2.2E-09 84.8 23.2 135 258-405 463-627 (804)
246 PF03969 AFG1_ATPase: AFG1-lik 98.3 2.4E-06 5.2E-11 94.2 9.7 141 254-418 59-207 (362)
247 PF05729 NACHT: NACHT domain 98.3 9.2E-06 2E-10 77.8 12.1 140 259-406 2-165 (166)
248 PF13401 AAA_22: AAA domain; P 98.3 4.3E-06 9.3E-11 77.6 9.2 73 257-329 4-100 (131)
249 PF00493 MCM: MCM2/3/5 family 98.2 5.6E-07 1.2E-11 98.2 3.5 187 258-461 58-326 (331)
250 cd01120 RecA-like_NTPases RecA 98.2 7E-06 1.5E-10 78.1 10.7 108 260-371 2-139 (165)
251 COG3283 TyrR Transcriptional r 98.2 5.2E-06 1.1E-10 89.1 10.2 209 219-455 199-443 (511)
252 KOG2035 Replication factor C, 98.2 2.8E-05 6.1E-10 81.3 15.1 178 219-424 8-220 (351)
253 KOG0480 DNA replication licens 98.2 3.8E-06 8.1E-11 95.6 8.3 221 223-461 344-643 (764)
254 COG3267 ExeA Type II secretory 98.2 5.3E-05 1.1E-09 78.6 15.8 183 260-455 54-267 (269)
255 COG3284 AcoR Transcriptional a 98.2 3E-06 6.5E-11 97.0 6.9 183 259-455 338-551 (606)
256 PRK05917 DNA polymerase III su 98.1 1.9E-05 4.1E-10 84.3 11.1 123 253-391 15-154 (290)
257 cd01124 KaiC KaiC is a circadi 98.1 4.2E-05 9.1E-10 75.5 12.4 102 260-369 2-140 (187)
258 PF12774 AAA_6: Hydrolytic ATP 98.1 3.4E-05 7.5E-10 80.0 12.1 126 257-400 32-176 (231)
259 COG1485 Predicted ATPase [Gene 98.0 1.1E-05 2.3E-10 87.1 8.0 165 228-417 29-209 (367)
260 KOG0482 DNA replication licens 98.0 1.4E-05 3.1E-10 88.8 8.9 230 225-463 343-640 (721)
261 PRK07276 DNA polymerase III su 98.0 6.2E-05 1.3E-09 80.6 12.4 130 253-401 20-172 (290)
262 PLN03210 Resistant to P. syrin 97.9 4E-05 8.6E-10 96.6 12.0 158 219-406 179-366 (1153)
263 PRK09361 radB DNA repair and r 97.9 7E-05 1.5E-09 76.8 11.1 110 257-367 23-160 (225)
264 KOG1051 Chaperone HSP104 and r 97.9 0.00017 3.6E-09 86.7 15.2 175 258-442 209-411 (898)
265 PF00931 NB-ARC: NB-ARC domain 97.9 9.3E-05 2E-09 78.1 11.4 171 235-433 4-202 (287)
266 KOG0477 DNA replication licens 97.9 5E-05 1.1E-09 86.4 9.5 194 259-462 484-758 (854)
267 TIGR02688 conserved hypothetic 97.9 0.00032 6.8E-09 78.2 15.6 61 257-329 209-273 (449)
268 PF00910 RNA_helicase: RNA hel 97.9 3.7E-05 8E-10 70.1 7.0 23 260-282 1-23 (107)
269 PRK07132 DNA polymerase III su 97.8 0.0002 4.4E-09 77.1 12.8 126 254-402 15-160 (299)
270 TIGR01618 phage_P_loop phage n 97.8 6.5E-05 1.4E-09 77.4 8.5 73 256-330 11-95 (220)
271 PRK11823 DNA repair protein Ra 97.8 9.6E-05 2.1E-09 83.9 10.6 74 258-331 81-171 (446)
272 KOG2383 Predicted ATPase [Gene 97.8 0.00018 3.9E-09 78.7 12.0 178 232-438 89-297 (467)
273 PRK05818 DNA polymerase III su 97.8 0.00013 2.8E-09 76.6 10.7 121 255-391 5-147 (261)
274 cd01121 Sms Sms (bacterial rad 97.8 0.0001 2.2E-09 81.8 10.4 74 258-331 83-173 (372)
275 PHA00729 NTP-binding motif con 97.7 8.3E-05 1.8E-09 76.7 7.8 25 259-283 19-43 (226)
276 KOG1968 Replication factor C, 97.7 4.8E-05 1E-09 91.7 6.9 203 220-440 316-535 (871)
277 COG5271 MDN1 AAA ATPase contai 97.7 6.6E-05 1.4E-09 92.1 7.7 136 256-406 1542-1705(4600)
278 cd01394 radB RadB. The archaea 97.7 0.00029 6.4E-09 71.8 11.4 115 253-368 13-157 (218)
279 PRK08533 flagellar accessory p 97.7 0.00034 7.3E-09 72.6 11.8 73 257-329 24-130 (230)
280 TIGR02012 tigrfam_recA protein 97.7 0.00021 4.6E-09 77.5 10.2 109 259-367 57-190 (321)
281 cd00983 recA RecA is a bacter 97.6 0.00029 6.3E-09 76.5 10.7 114 254-367 50-190 (325)
282 PRK06067 flagellar accessory p 97.6 0.00052 1.1E-08 70.9 12.0 39 254-292 22-63 (234)
283 COG1618 Predicted nucleotide k 97.6 0.00028 6.1E-09 68.7 8.8 26 256-281 4-29 (179)
284 PF13207 AAA_17: AAA domain; P 97.6 5.9E-05 1.3E-09 69.2 4.0 30 260-289 2-31 (121)
285 cd01393 recA_like RecA is a b 97.6 0.00045 9.7E-09 70.6 10.6 113 255-367 17-167 (226)
286 KOG2228 Origin recognition com 97.6 0.00063 1.4E-08 73.1 11.7 160 225-404 25-219 (408)
287 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00036 7.7E-09 71.8 9.5 112 256-367 18-168 (235)
288 PF13191 AAA_16: AAA ATPase do 97.5 0.00021 4.5E-09 70.1 7.3 59 226-293 2-63 (185)
289 PRK08118 topology modulation p 97.5 0.00016 3.5E-09 71.2 6.5 33 259-291 3-35 (167)
290 PF07693 KAP_NTPase: KAP famil 97.5 0.0035 7.7E-08 67.5 16.6 81 315-407 171-266 (325)
291 PRK14722 flhF flagellar biosyn 97.5 0.00045 9.8E-09 76.5 9.6 110 255-376 135-266 (374)
292 cd03283 ABC_MutS-like MutS-lik 97.5 0.00075 1.6E-08 68.5 10.4 104 258-372 26-151 (199)
293 PRK00131 aroK shikimate kinase 97.5 0.00014 3E-09 70.8 4.8 34 256-289 3-36 (175)
294 KOG0481 DNA replication licens 97.4 0.00068 1.5E-08 76.0 10.6 127 259-390 366-513 (729)
295 PRK07261 topology modulation p 97.4 0.00026 5.7E-09 70.0 6.8 35 259-293 2-36 (171)
296 KOG2170 ATPase of the AAA+ sup 97.4 0.0052 1.1E-07 65.4 16.5 96 225-329 83-191 (344)
297 PRK15455 PrkA family serine pr 97.4 0.00023 5E-09 81.8 6.8 63 222-290 74-137 (644)
298 TIGR00416 sms DNA repair prote 97.4 0.00073 1.6E-08 77.0 10.8 73 258-330 95-184 (454)
299 COG1373 Predicted ATPase (AAA+ 97.4 0.0012 2.6E-08 74.0 12.0 124 259-399 39-162 (398)
300 TIGR02858 spore_III_AA stage I 97.4 0.00037 8E-09 74.0 7.5 95 258-370 112-230 (270)
301 KOG2543 Origin recognition com 97.4 0.003 6.4E-08 69.1 14.3 162 224-405 6-194 (438)
302 PRK05973 replicative DNA helic 97.4 0.0034 7.3E-08 65.5 14.3 35 258-292 65-102 (237)
303 PF05707 Zot: Zonular occluden 97.4 0.00018 3.8E-09 72.5 4.6 121 260-389 3-144 (193)
304 COG1116 TauB ABC-type nitrate/ 97.4 0.00015 3.4E-09 75.1 4.2 23 259-281 31-53 (248)
305 PF13671 AAA_33: AAA domain; P 97.4 0.00052 1.1E-08 64.7 7.3 34 260-295 2-35 (143)
306 PHA02624 large T antigen; Prov 97.3 0.00041 8.8E-09 80.2 7.7 40 254-293 428-467 (647)
307 PRK05800 cobU adenosylcobinami 97.3 0.0017 3.8E-08 64.3 11.0 90 259-352 3-113 (170)
308 PF06309 Torsin: Torsin; Inte 97.3 0.0014 3E-08 61.7 9.6 52 224-281 25-77 (127)
309 cd00984 DnaB_C DnaB helicase C 97.3 0.0017 3.8E-08 67.0 11.2 39 253-291 9-51 (242)
310 PF06745 KaiC: KaiC; InterPro 97.3 0.0022 4.7E-08 65.9 11.7 107 254-367 16-159 (226)
311 cd00046 DEXDc DEAD-like helica 97.3 0.0021 4.5E-08 58.5 10.4 24 258-281 1-24 (144)
312 PF13604 AAA_30: AAA domain; P 97.3 0.00068 1.5E-08 68.6 7.7 97 259-368 20-132 (196)
313 PRK09354 recA recombinase A; P 97.3 0.0013 2.8E-08 72.1 10.3 113 254-366 55-194 (349)
314 PF14516 AAA_35: AAA-like doma 97.3 0.016 3.6E-07 63.3 18.7 159 257-424 31-231 (331)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0018 3.9E-08 67.3 10.5 39 254-292 18-59 (237)
316 PRK10536 hypothetical protein; 97.2 0.0016 3.5E-08 68.5 9.9 46 221-280 52-97 (262)
317 cd01131 PilT Pilus retraction 97.2 0.0012 2.6E-08 66.8 8.6 67 260-326 4-84 (198)
318 PRK13947 shikimate kinase; Pro 97.2 0.00034 7.4E-09 68.3 4.5 31 259-289 3-33 (171)
319 PHA02774 E1; Provisional 97.2 0.00099 2.1E-08 76.8 8.8 33 258-290 435-468 (613)
320 cd01122 GP4d_helicase GP4d_hel 97.2 0.0024 5.2E-08 67.3 11.2 39 253-291 26-68 (271)
321 COG3854 SpoIIIAA ncharacterize 97.2 0.002 4.4E-08 66.1 10.0 69 259-327 139-229 (308)
322 PTZ00202 tuzin; Provisional 97.2 0.014 3E-07 65.7 17.0 181 221-434 259-457 (550)
323 PRK12723 flagellar biosynthesi 97.2 0.0019 4.1E-08 72.0 10.5 138 226-376 144-306 (388)
324 PRK04296 thymidine kinase; Pro 97.2 0.0011 2.4E-08 66.7 7.9 70 259-328 4-90 (190)
325 PRK14974 cell division protein 97.2 0.0028 6E-08 69.4 11.6 73 256-328 139-234 (336)
326 PRK06762 hypothetical protein; 97.2 0.0012 2.7E-08 64.2 8.0 39 257-295 2-40 (166)
327 PRK13948 shikimate kinase; Pro 97.2 0.0015 3.3E-08 65.4 8.6 35 255-289 8-42 (182)
328 COG0563 Adk Adenylate kinase a 97.2 0.0011 2.4E-08 66.1 7.6 33 259-293 2-34 (178)
329 COG4650 RtcR Sigma54-dependent 97.2 0.00041 8.9E-09 73.0 4.6 79 252-330 203-296 (531)
330 PF00437 T2SE: Type II/IV secr 97.1 0.00079 1.7E-08 71.1 6.8 98 219-326 99-207 (270)
331 PRK03839 putative kinase; Prov 97.1 0.00038 8.2E-09 68.9 4.1 31 259-289 2-32 (180)
332 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0059 1.3E-07 62.6 12.8 105 257-367 16-152 (224)
333 cd01128 rho_factor Transcripti 97.1 0.0045 9.7E-08 65.1 12.0 26 258-283 17-42 (249)
334 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0035 7.6E-08 64.3 11.0 23 257-279 29-51 (213)
335 PRK00625 shikimate kinase; Pro 97.1 0.0005 1.1E-08 68.3 4.4 31 259-289 2-32 (173)
336 TIGR02238 recomb_DMC1 meiotic 97.1 0.0032 7E-08 68.3 11.0 109 258-366 97-243 (313)
337 cd00464 SK Shikimate kinase (S 97.1 0.00052 1.1E-08 65.5 4.3 31 259-289 1-31 (154)
338 PRK04301 radA DNA repair and r 97.1 0.0028 6E-08 68.8 10.3 113 255-367 100-251 (317)
339 PRK13946 shikimate kinase; Pro 97.1 0.0014 3E-08 65.4 7.4 35 256-290 9-43 (184)
340 PLN03187 meiotic recombination 97.1 0.0034 7.3E-08 69.0 10.9 108 259-366 128-273 (344)
341 PRK00771 signal recognition pa 97.1 0.0046 1E-07 70.0 12.2 39 255-293 93-134 (437)
342 COG0703 AroK Shikimate kinase 97.1 0.0016 3.5E-08 64.4 7.5 32 258-289 3-34 (172)
343 PRK09376 rho transcription ter 97.1 0.0035 7.5E-08 69.6 10.8 23 260-282 172-194 (416)
344 TIGR02236 recomb_radA DNA repa 97.0 0.0042 9.2E-08 67.1 11.3 112 256-367 94-245 (310)
345 PF05272 VirE: Virulence-assoc 97.0 0.002 4.3E-08 65.5 8.0 124 233-389 34-168 (198)
346 cd00544 CobU Adenosylcobinamid 97.0 0.0053 1.1E-07 60.8 10.8 71 260-332 2-89 (169)
347 cd02020 CMPK Cytidine monophos 97.0 0.0022 4.7E-08 60.5 7.8 30 260-289 2-31 (147)
348 PRK13949 shikimate kinase; Pro 97.0 0.00064 1.4E-08 67.1 4.2 31 259-289 3-33 (169)
349 COG4088 Predicted nucleotide k 97.0 0.0034 7.5E-08 63.5 9.2 22 260-281 4-25 (261)
350 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.005 1.1E-07 65.0 11.0 35 257-291 36-73 (259)
351 PTZ00035 Rad51 protein; Provis 97.0 0.0054 1.2E-07 67.3 11.5 108 258-365 119-264 (337)
352 COG4619 ABC-type uncharacteriz 97.0 0.0043 9.4E-08 61.1 9.5 27 255-281 27-53 (223)
353 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0007 1.5E-08 66.9 4.2 34 260-295 2-35 (183)
354 KOG3347 Predicted nucleotide k 97.0 0.00064 1.4E-08 65.4 3.6 31 259-289 9-39 (176)
355 cd00227 CPT Chloramphenicol (C 97.0 0.0008 1.7E-08 66.5 4.5 37 258-294 3-39 (175)
356 PRK14532 adenylate kinase; Pro 97.0 0.00074 1.6E-08 67.2 4.2 36 259-296 2-37 (188)
357 cd03216 ABC_Carb_Monos_I This 97.0 0.0022 4.9E-08 62.7 7.5 108 254-372 23-145 (163)
358 PLN02200 adenylate kinase fami 96.9 0.0011 2.3E-08 69.1 5.4 42 253-296 39-80 (234)
359 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0053 1.1E-07 64.2 10.6 35 260-294 2-39 (249)
360 TIGR02655 circ_KaiC circadian 96.9 0.0044 9.5E-08 71.3 10.6 78 252-329 256-366 (484)
361 PRK06217 hypothetical protein; 96.9 0.0009 2E-08 66.6 4.3 31 259-289 3-33 (183)
362 PRK14531 adenylate kinase; Pro 96.9 0.0011 2.4E-08 66.1 4.7 35 258-294 3-37 (183)
363 TIGR01420 pilT_fam pilus retra 96.9 0.0022 4.9E-08 70.4 7.6 68 259-326 124-205 (343)
364 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0086 1.9E-07 61.5 11.5 38 253-290 16-56 (229)
365 PF09848 DUF2075: Uncharacteri 96.9 0.0039 8.4E-08 68.7 9.5 23 259-281 3-25 (352)
366 PRK04328 hypothetical protein; 96.9 0.013 2.9E-07 61.4 13.0 36 256-291 22-60 (249)
367 PRK04841 transcriptional regul 96.9 0.024 5.1E-07 69.7 17.2 150 258-425 33-218 (903)
368 cd01428 ADK Adenylate kinase ( 96.8 0.001 2.2E-08 66.1 4.1 34 260-295 2-35 (194)
369 cd01130 VirB11-like_ATPase Typ 96.8 0.00099 2.1E-08 66.6 4.1 70 257-326 25-110 (186)
370 PF00448 SRP54: SRP54-type pro 96.8 0.0025 5.3E-08 64.6 6.9 108 257-373 1-131 (196)
371 cd03243 ABC_MutS_homologs The 96.8 0.0057 1.2E-07 61.9 9.5 22 258-279 30-51 (202)
372 cd02027 APSK Adenosine 5'-phos 96.8 0.0041 8.8E-08 60.1 8.1 35 260-294 2-39 (149)
373 PRK11889 flhF flagellar biosyn 96.8 0.009 2E-07 66.5 11.6 94 230-327 217-331 (436)
374 cd02021 GntK Gluconate kinase 96.8 0.0011 2.4E-08 63.4 3.9 33 260-294 2-34 (150)
375 PRK12724 flagellar biosynthesi 96.8 0.021 4.6E-07 64.1 14.5 36 257-292 223-262 (432)
376 PRK13695 putative NTPase; Prov 96.8 0.0096 2.1E-07 58.6 10.6 23 259-281 2-24 (174)
377 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0029 6.2E-08 61.2 6.8 106 256-373 24-144 (157)
378 PRK09519 recA DNA recombinatio 96.8 0.0064 1.4E-07 73.0 10.8 109 258-366 61-194 (790)
379 PTZ00088 adenylate kinase 1; P 96.8 0.0016 3.4E-08 67.7 5.0 33 257-289 6-38 (229)
380 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0018 4E-08 64.5 5.4 104 257-371 25-134 (177)
381 smart00534 MUTSac ATPase domai 96.8 0.0097 2.1E-07 59.5 10.6 19 260-278 2-20 (185)
382 PRK14530 adenylate kinase; Pro 96.8 0.0014 2.9E-08 67.1 4.5 30 259-288 5-34 (215)
383 PF01745 IPT: Isopentenyl tran 96.8 0.0022 4.9E-08 65.3 5.8 137 259-409 3-144 (233)
384 TIGR01313 therm_gnt_kin carboh 96.7 0.0012 2.6E-08 64.1 3.7 32 260-293 1-32 (163)
385 PRK05057 aroK shikimate kinase 96.7 0.0016 3.6E-08 64.4 4.6 34 257-290 4-37 (172)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0071 1.5E-07 58.0 8.9 102 255-372 24-130 (144)
387 COG2874 FlaH Predicted ATPases 96.7 0.012 2.6E-07 60.0 10.7 125 245-378 14-176 (235)
388 PRK03731 aroL shikimate kinase 96.7 0.0017 3.7E-08 63.5 4.6 32 258-289 3-34 (171)
389 PRK08154 anaerobic benzoate ca 96.7 0.0044 9.4E-08 67.2 8.1 36 254-289 130-165 (309)
390 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0078 1.7E-07 65.5 10.1 112 255-366 94-243 (316)
391 PRK06547 hypothetical protein; 96.7 0.0018 3.9E-08 64.3 4.6 36 254-289 12-47 (172)
392 COG5245 DYN1 Dynein, heavy cha 96.7 0.0078 1.7E-07 74.5 10.6 189 256-454 1493-1728(3164)
393 PLN03186 DNA repair protein RA 96.7 0.0073 1.6E-07 66.4 9.7 110 258-367 124-271 (342)
394 TIGR02782 TrbB_P P-type conjug 96.7 0.0021 4.6E-08 69.3 5.5 70 257-326 132-214 (299)
395 PF10236 DAP3: Mitochondrial r 96.7 0.045 9.9E-07 59.4 15.7 95 316-410 156-283 (309)
396 PRK13900 type IV secretion sys 96.7 0.0022 4.8E-08 70.2 5.5 71 256-326 159-245 (332)
397 PF13481 AAA_25: AAA domain; P 96.7 0.0066 1.4E-07 60.3 8.4 72 260-331 35-156 (193)
398 PRK12339 2-phosphoglycerate ki 96.7 0.011 2.5E-07 59.9 10.2 29 257-285 3-31 (197)
399 cd03115 SRP The signal recogni 96.7 0.015 3.2E-07 57.1 10.8 34 260-293 3-39 (173)
400 COG5271 MDN1 AAA ATPase contai 96.7 0.0055 1.2E-07 76.3 8.9 134 259-404 890-1047(4600)
401 PRK10416 signal recognition pa 96.6 0.032 6.9E-07 60.8 14.2 63 230-292 86-152 (318)
402 PRK08233 hypothetical protein; 96.6 0.0051 1.1E-07 60.4 7.3 33 258-290 4-37 (182)
403 PRK13764 ATPase; Provisional 96.6 0.0029 6.4E-08 74.0 6.4 69 257-326 257-334 (602)
404 PRK14528 adenylate kinase; Pro 96.6 0.002 4.4E-08 64.5 4.4 30 259-288 3-32 (186)
405 PF04665 Pox_A32: Poxvirus A32 96.6 0.015 3.2E-07 60.9 10.8 133 255-403 11-169 (241)
406 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0051 1.1E-07 60.6 7.1 105 257-372 26-158 (173)
407 PRK06696 uridine kinase; Valid 96.6 0.0047 1E-07 63.5 7.1 40 255-294 20-62 (223)
408 cd01125 repA Hexameric Replica 96.6 0.022 4.7E-07 59.2 12.1 21 260-280 4-24 (239)
409 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.016 3.5E-07 58.5 10.8 21 258-278 29-49 (200)
410 COG1102 Cmk Cytidylate kinase 96.6 0.0019 4.1E-08 63.0 3.7 28 260-287 3-30 (179)
411 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0051 1.1E-07 67.2 7.4 82 223-311 59-143 (358)
412 TIGR00064 ftsY signal recognit 96.6 0.021 4.5E-07 60.9 11.9 39 254-292 69-110 (272)
413 TIGR03499 FlhF flagellar biosy 96.6 0.0085 1.8E-07 64.1 9.0 38 256-293 193-235 (282)
414 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.015 3.3E-07 59.2 10.4 22 258-279 30-51 (204)
415 PRK13851 type IV secretion sys 96.6 0.0021 4.6E-08 70.6 4.4 73 254-326 159-246 (344)
416 cd03247 ABCC_cytochrome_bd The 96.6 0.0099 2.1E-07 58.8 8.8 107 254-372 25-160 (178)
417 COG4178 ABC-type uncharacteriz 96.5 0.0083 1.8E-07 69.9 9.2 106 253-370 415-575 (604)
418 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0024 5.1E-08 63.1 4.3 30 259-288 5-34 (188)
419 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0065 1.4E-07 64.4 7.8 92 221-326 57-159 (264)
420 TIGR02788 VirB11 P-type DNA tr 96.5 0.0031 6.7E-08 68.3 5.4 73 254-326 141-228 (308)
421 PRK02496 adk adenylate kinase; 96.5 0.0022 4.8E-08 63.6 4.0 30 259-288 3-32 (184)
422 TIGR02655 circ_KaiC circadian 96.5 0.023 4.9E-07 65.5 12.7 38 255-292 19-60 (484)
423 PRK14527 adenylate kinase; Pro 96.5 0.0023 5.1E-08 64.0 4.1 34 255-288 4-37 (191)
424 PRK04040 adenylate kinase; Pro 96.5 0.0026 5.6E-08 64.0 4.4 30 257-286 2-33 (188)
425 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0065 1.4E-07 66.4 7.8 39 257-295 162-200 (325)
426 PRK10867 signal recognition pa 96.5 0.028 6E-07 63.7 13.0 74 254-327 97-194 (433)
427 TIGR01351 adk adenylate kinase 96.5 0.0023 5.1E-08 65.1 4.0 29 260-288 2-30 (210)
428 smart00487 DEXDc DEAD-like hel 96.5 0.017 3.6E-07 55.9 9.9 33 258-290 25-62 (201)
429 cd02019 NK Nucleoside/nucleoti 96.5 0.0076 1.7E-07 50.4 6.3 30 260-289 2-32 (69)
430 PF13245 AAA_19: Part of AAA d 96.5 0.0044 9.6E-08 53.2 5.0 32 259-290 12-50 (76)
431 cd03238 ABC_UvrA The excision 96.5 0.012 2.5E-07 58.7 8.7 25 256-280 20-44 (176)
432 cd03223 ABCD_peroxisomal_ALDP 96.5 0.013 2.7E-07 57.5 8.7 103 254-370 24-149 (166)
433 cd03246 ABCC_Protease_Secretio 96.5 0.0087 1.9E-07 58.9 7.6 105 257-372 28-159 (173)
434 COG2805 PilT Tfp pilus assembl 96.4 0.016 3.4E-07 61.9 9.8 72 256-327 123-209 (353)
435 cd03228 ABCC_MRP_Like The MRP 96.4 0.0055 1.2E-07 60.2 6.2 106 255-372 26-158 (171)
436 PF12780 AAA_8: P-loop contain 96.4 0.019 4.2E-07 61.0 10.6 90 225-326 9-99 (268)
437 PHA02530 pseT polynucleotide k 96.4 0.0078 1.7E-07 64.4 7.8 38 257-295 2-39 (300)
438 cd03227 ABC_Class2 ABC-type Cl 96.4 0.018 3.8E-07 56.3 9.6 23 257-279 21-43 (162)
439 PRK00279 adk adenylate kinase; 96.4 0.0029 6.3E-08 64.6 4.3 29 260-288 3-31 (215)
440 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0087 1.9E-07 60.4 7.7 43 254-296 12-55 (199)
441 PRK05541 adenylylsulfate kinas 96.4 0.0074 1.6E-07 59.4 7.0 40 255-294 5-47 (176)
442 PRK13808 adenylate kinase; Pro 96.4 0.0091 2E-07 65.2 8.1 34 259-294 2-35 (333)
443 cd03214 ABC_Iron-Siderophores_ 96.4 0.0096 2.1E-07 59.0 7.7 27 255-281 23-49 (180)
444 PRK13833 conjugal transfer pro 96.4 0.0055 1.2E-07 66.7 6.4 70 257-326 144-225 (323)
445 TIGR02525 plasmid_TraJ plasmid 96.4 0.0074 1.6E-07 67.1 7.3 68 259-326 151-235 (372)
446 TIGR01448 recD_rel helicase, p 96.4 0.019 4.1E-07 69.2 11.3 100 259-372 340-458 (720)
447 PRK00889 adenylylsulfate kinas 96.4 0.015 3.3E-07 57.2 8.7 38 257-294 4-44 (175)
448 TIGR01425 SRP54_euk signal rec 96.4 0.031 6.7E-07 63.1 12.1 72 255-326 98-192 (429)
449 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.1E-08 58.1 3.3 22 260-281 1-22 (129)
450 PRK06581 DNA polymerase III su 96.3 0.027 5.9E-07 58.7 10.7 140 255-410 13-167 (263)
451 PRK01184 hypothetical protein; 96.3 0.0034 7.4E-08 62.2 4.0 29 259-288 3-31 (184)
452 COG1936 Predicted nucleotide k 96.3 0.0029 6.4E-08 62.4 3.4 30 259-289 2-31 (180)
453 PRK09302 circadian clock prote 96.3 0.04 8.7E-07 63.7 13.3 111 254-370 28-178 (509)
454 TIGR00767 rho transcription te 96.3 0.011 2.3E-07 66.0 8.1 24 259-282 170-193 (415)
455 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.023 5E-07 58.8 10.1 105 257-372 31-157 (222)
456 COG2804 PulE Type II secretory 96.3 0.0099 2.2E-07 67.5 7.9 94 219-326 233-337 (500)
457 PLN02199 shikimate kinase 96.3 0.0076 1.6E-07 64.6 6.6 32 258-289 103-134 (303)
458 PLN02674 adenylate kinase 96.3 0.0051 1.1E-07 64.5 5.0 39 255-295 29-67 (244)
459 PHA00012 I assembly protein 96.3 0.012 2.6E-07 63.6 7.8 111 260-377 4-136 (361)
460 PRK04182 cytidylate kinase; Pr 96.2 0.0042 9.1E-08 60.7 4.0 29 259-287 2-30 (180)
461 TIGR00152 dephospho-CoA kinase 96.2 0.031 6.6E-07 55.8 10.3 35 260-296 2-36 (188)
462 PF00406 ADK: Adenylate kinase 96.2 0.0034 7.3E-08 60.3 3.3 34 262-297 1-34 (151)
463 cd03229 ABC_Class3 This class 96.2 0.012 2.6E-07 58.2 7.2 25 257-281 26-50 (178)
464 PF08423 Rad51: Rad51; InterP 96.2 0.015 3.2E-07 61.4 8.2 106 262-367 43-186 (256)
465 TIGR02533 type_II_gspE general 96.2 0.012 2.6E-07 67.6 8.1 93 220-326 218-321 (486)
466 PRK09302 circadian clock prote 96.2 0.028 6.2E-07 65.0 11.2 75 256-330 272-377 (509)
467 COG1066 Sms Predicted ATP-depe 96.2 0.031 6.6E-07 62.1 10.7 74 259-332 95-184 (456)
468 TIGR00959 ffh signal recogniti 96.2 0.052 1.1E-06 61.5 13.0 73 255-327 97-193 (428)
469 PF05970 PIF1: PIF1-like helic 96.2 0.024 5.3E-07 62.8 10.1 44 230-282 4-47 (364)
470 PRK08099 bifunctional DNA-bind 96.2 0.011 2.3E-07 66.5 7.2 36 255-290 217-252 (399)
471 COG1120 FepC ABC-type cobalami 96.2 0.022 4.7E-07 60.1 9.0 24 258-281 29-52 (258)
472 PF13479 AAA_24: AAA domain 96.2 0.0081 1.8E-07 61.5 5.7 68 257-328 3-80 (213)
473 PRK13894 conjugal transfer ATP 96.1 0.0085 1.8E-07 65.3 6.0 70 257-326 148-229 (319)
474 PF02562 PhoH: PhoH-like prote 96.1 0.0067 1.5E-07 61.9 4.8 23 259-281 21-43 (205)
475 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0053 1.2E-07 59.6 4.0 29 260-288 3-31 (171)
476 cd03213 ABCG_EPDR ABCG transpo 96.1 0.017 3.7E-07 58.1 7.7 28 254-281 32-59 (194)
477 PF13521 AAA_28: AAA domain; P 96.1 0.0042 9.1E-08 60.4 3.1 30 260-290 2-31 (163)
478 PRK05703 flhF flagellar biosyn 96.1 0.035 7.6E-07 62.9 10.8 37 257-293 221-262 (424)
479 PF08433 KTI12: Chromatin asso 96.0 0.018 3.9E-07 61.3 7.9 69 260-328 4-82 (270)
480 COG0468 RecA RecA/RadA recombi 96.0 0.054 1.2E-06 57.9 11.3 116 252-367 53-194 (279)
481 COG1855 ATPase (PilT family) [ 96.0 0.0065 1.4E-07 67.6 4.4 45 220-281 243-287 (604)
482 PRK12727 flagellar biosynthesi 96.0 0.053 1.1E-06 62.6 11.8 26 256-281 349-374 (559)
483 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.0 0.012 2.7E-07 59.3 6.1 33 259-291 40-79 (205)
484 PRK14526 adenylate kinase; Pro 96.0 0.0068 1.5E-07 62.2 4.2 34 259-294 2-35 (211)
485 cd03215 ABC_Carb_Monos_II This 96.0 0.019 4E-07 57.1 7.1 26 256-281 25-50 (182)
486 PRK12608 transcription termina 95.9 0.022 4.7E-07 63.1 8.1 23 259-281 135-157 (380)
487 PF00488 MutS_V: MutS domain V 95.9 0.09 2E-06 54.8 12.3 104 257-371 43-168 (235)
488 COG4608 AppF ABC-type oligopep 95.9 0.024 5.3E-07 59.8 8.0 28 255-282 37-64 (268)
489 COG2274 SunT ABC-type bacterio 95.9 0.014 3.1E-07 69.8 7.2 28 254-281 494-523 (709)
490 TIGR01613 primase_Cterm phage/ 95.9 0.026 5.7E-07 60.9 8.6 85 229-326 54-138 (304)
491 PLN02459 probable adenylate ki 95.9 0.0091 2E-07 63.1 4.8 35 258-294 30-64 (261)
492 PF13086 AAA_11: AAA domain; P 95.9 0.0062 1.3E-07 61.4 3.4 22 260-281 20-41 (236)
493 TIGR00150 HI0065_YjeE ATPase, 95.9 0.02 4.2E-07 54.6 6.4 28 257-284 22-49 (133)
494 PRK10263 DNA translocase FtsK; 95.9 0.045 9.8E-07 68.3 11.1 74 318-401 1142-1217(1355)
495 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.019 4.1E-07 63.5 7.2 68 259-326 136-222 (358)
496 COG2884 FtsE Predicted ATPase 95.8 0.032 7E-07 56.1 7.8 30 252-281 21-52 (223)
497 PF01583 APS_kinase: Adenylyls 95.8 0.0098 2.1E-07 58.2 4.1 39 257-295 2-43 (156)
498 COG4586 ABC-type uncharacteriz 95.8 0.02 4.4E-07 60.4 6.6 32 250-281 41-74 (325)
499 KOG3928 Mitochondrial ribosome 95.8 0.22 4.7E-06 55.4 14.7 49 385-434 405-457 (461)
500 PRK10078 ribose 1,5-bisphospho 95.7 0.0099 2.1E-07 59.3 4.1 30 258-287 3-32 (186)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-129 Score=1045.52 Aligned_cols=589 Identities=59% Similarity=0.896 Sum_probs=525.8
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHhhcCCC-----ccCcHHHHHHHHHHHHHhccc--chHHHHHHHhhhcccccchhhhc
Q 005066 67 ASEVAHLRELYRR-NDPEAVIRLFESQPS-----LHSNQSALSEYVKALVKVDRL--DDSELLKTLQKGIANSARDEESI 138 (715)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 138 (715)
.++.+||+..+.+ +.+..++.+|+.++. .++.++++..|.+++...+-. ..............+..+...+.
T Consensus 118 ~s~~~~~k~al~~~e~s~~~~~~~~~~~~~~~~l~a~s~~~~~~~~q~~~~~g~~~~~~~~~~~~~~~~~a~~l~~~l~~ 197 (752)
T KOG0734|consen 118 DSAQSFYKNALQNLEWSLRVVSSFELQGAHVRALPASSSALLPFYIQALQRRGFKTLKSREGVGRRTRSTAERLNESLAN 197 (752)
T ss_pred HHHHHHHHHHHhhceeeeeeecccccCcchhhccccCChhhHHHHHHHHHhcccchhhhhhhhcccccccHHHHhHHHhc
Confidence 5588999999988 788888989986532 256778999999999765432 11111000111111111110000
Q ss_pred ccccccc---ccCCcc----c------cCccCCCCCCeEEEecc-----CcchhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005066 139 GGISAFK---NVGKPT----K------DGVLGTASAPIHMVAAE-----GGHFKEQLWRTIRTIALGFLLISGVGALIED 200 (715)
Q Consensus 139 ~~~~~~~---~~~~~~----~------~~~~~~~~~p~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (715)
+. ..+. .++... . ..+..+.+.|+|++..+ ...+...+|++++..++.|+++.|+..++++
T Consensus 198 ~~-~~~~~~~~~~~ps~~e~~~~~~g~~n~~es~k~p~~~~~~e~~~s~~~~~~~~~~k~i~~~i~~~~~~~G~~~~~~~ 276 (752)
T KOG0734|consen 198 SP-SSLKGDLQVGAPSLVELLDKLEGTKNIPESHKDPFHVGFVEGFLSNRTTKAGRLVKTIRTTIVGYLLLLGIYALLEN 276 (752)
T ss_pred Cc-hhcCCCccCCCchhHHHhhhhhccCCcchhccCceeeeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 1111 111110 1 12334778999997764 4556678999999888899999999999988
Q ss_pred hccc----cccCCccccCCCCCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHH
Q 005066 201 RGIS----KGLGLHEEVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 201 ~~~~----~~~~~~~~~~~~~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAra 276 (715)
.+.. ...++.++++|....+++|+||.|+|++|++|+|+|+||+||++|.++|+++||||||+||||||||+||||
T Consensus 277 ~~l~~i~~~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARA 356 (752)
T KOG0734|consen 277 TGLSGIFRSTTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARA 356 (752)
T ss_pred cccccccccccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHH
Confidence 7542 335677889998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005066 277 IAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 356 (715)
Q Consensus 277 lA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~ 356 (715)
+|+|+++|||+.++++|.++|+|++++++|++|..|+.++||||||||||++|++|.+.+..|.++++||||.+||||.+
T Consensus 357 vAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 357 VAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred hhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 005066 357 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNI 436 (715)
Q Consensus 357 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~ 436 (715)
+.+||||++||+|+.||++|.||||||++|.+|.||..+|.+||+.|+.++....++|+..||+.|+||+|+||+|++|+
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEE
Q 005066 437 AALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVA 516 (715)
Q Consensus 437 A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~ 516 (715)
|++.|+.+++..|+|.|+++|.|+++||++|++..++++.++++||||+||||||+++.++.|+||+||+|||.+||+|.
T Consensus 517 AAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~ 596 (752)
T KOG0734|consen 517 AALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTS 596 (752)
T ss_pred HHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccHHHHHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCCCCCC
Q 005066 517 QLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSM 596 (715)
Q Consensus 517 ~~p~~~~~~~tr~~l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~~~~~ 596 (715)
++|++|++.+||.||+++++||||||+||||+||.+.+||||+|||++||++|++||++||||+++|++++...+++.++
T Consensus 597 ~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~ 676 (752)
T KOG0734|consen 597 QLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSL 676 (752)
T ss_pred ecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhh
Q 005066 597 STETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 597 s~~~~~~id~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~ 656 (715)
+++++..||.||+++|+++|+||+.||+.|.++|++||++||+||||+++||+++|.+..
T Consensus 677 ~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~ 736 (752)
T KOG0734|consen 677 SPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736 (752)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999998763
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-99 Score=850.76 Aligned_cols=479 Identities=54% Similarity=0.844 Sum_probs=440.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccc-----ccCCcc---ccCCCCCCCCCCccCCCcHHHHHHHHHHHHHhcCchh
Q 005066 177 LWRTIRTIALGFLLISGVGALIEDRGISK-----GLGLHE---EVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKR 248 (715)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~ 248 (715)
+|-.+....++++++.++++++..+.... .+++.+ .........++|.|+.|+|++|++|.|+|+||++|.+
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~k 174 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKK 174 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchh
Confidence 44444444556666666555554321111 122211 1112224679999999999999999999999999999
Q ss_pred HhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhh
Q 005066 249 FTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 249 ~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l 328 (715)
|..+|++.|+|+||+||||||||+|||++|+++++||+.+|+|+|+++|+|.++.++|++|.+|++++||||||||||++
T Consensus 175 y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005066 329 GGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 329 ~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
+.+|.. ..+.+..+++|+||.+||||..+.+|+||++||+|+.||+||+||||||++|.++.||..+|.+|++.|++
T Consensus 255 Gr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 255 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred ccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 998853 46788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccccccccccchhhhhhhhHHHh
Q 005066 406 KVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEG 485 (715)
Q Consensus 406 ~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEa 485 (715)
+.....++|+..+|+.|+||+|+|+.|++|+|++.|+++++..|++.||.+|.+++++|+++++.++++++++.+||||+
T Consensus 335 ~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEa 414 (596)
T COG0465 335 NKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEA 414 (596)
T ss_pred cCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHHH
Q 005066 486 GHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQA 565 (715)
Q Consensus 486 GhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~A 565 (715)
|||++++++++++++||+||+|||+++|||+++|++|++++|+.+++++|+++||||+|||++||. ++|||+++||++|
T Consensus 415 ghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~a 493 (596)
T COG0465 415 GHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKA 493 (596)
T ss_pred HHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHhCCCCcccceecccCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 005066 566 TKLARAMVTKYGMSKEVGVVTHNYDDN--------GKSMSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALANAL 637 (715)
Q Consensus 566 T~lA~~mV~~~Gms~~~G~~~~~~~~~--------~~~~s~~~~~~id~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~L 637 (715)
|++|+.||++|||++++|++.|..... .+.+|+++...||.||+++++++|+++++||.+|++.++.+++.|
T Consensus 494 t~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~L 573 (596)
T COG0465 494 TDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEML 573 (596)
T ss_pred HHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999875432 235899999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHhhh
Q 005066 638 LEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 638 le~etL~~~ei~~il~~~~ 656 (715)
+++|||++++|.+|+....
T Consensus 574 le~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 574 LEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHhhccCHHHHHHHHhccc
Confidence 9999999999999998643
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-94 Score=817.45 Aligned_cols=442 Identities=52% Similarity=0.821 Sum_probs=422.6
Q ss_pred CCCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 216 SLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 216 ~~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
..+.+++|+||.|+|++|++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC----CCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 296 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN----PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~----~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
+++|.++.+++++|..|+.++||||||||||+++.+|. ...+.+..+++||||.+||||....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999884 25677889999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccC
Q 005066 372 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVT 450 (715)
Q Consensus 372 LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It 450 (715)
||++|+||||||++|.+++||..+|.+|++.|+++.... +++|+..+|..|+||+|+||.|+||+|++.|++++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999988774 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHH
Q 005066 451 MADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQ 530 (715)
Q Consensus 451 ~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~ 530 (715)
..||.+|+++++.|.+.++..++.++++.+||||||||+++|++++.+|+.||||+| |+++||+++.|.++ +.+|++|
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 77999999999877 9999999
Q ss_pred HHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCC-----CCCCCHHHHHHHH
Q 005066 531 MLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-----GKSMSTETRLLIE 605 (715)
Q Consensus 531 l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~-----~~~~s~~~~~~id 605 (715)
|+++|+|+||||||||++|| +++||||++||++||++|+.||++|||++++|++++..... .+++|..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 68999999999999999999999999999999999854332 2578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhh
Q 005066 606 KEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVNSQQQ 660 (715)
Q Consensus 606 ~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~~~~~ 660 (715)
.||+++++.||++|.++|++|++.|+.||+.||++|+|+++|+.+++.......+
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999988776554
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.4e-86 Score=766.69 Aligned_cols=478 Identities=46% Similarity=0.742 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-----cccc-cCCc---cccCCCCCCCCCCccCCCcHHHHHHHHHHHHHhcCch
Q 005066 177 LWRTIRTIALGFLLISGVGALIEDRG-----ISKG-LGLH---EEVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPK 247 (715)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~ 247 (715)
+|..+..++++++++.++++++.... ..+. +.+. ..........++|+||+|++++|+++.+++.++++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~ 206 (638)
T CHL00176 127 IVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPE 206 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHH
Confidence 44444455566777777666543321 0111 1111 1222333567899999999999999999999999999
Q ss_pred hHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchh
Q 005066 248 RFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDA 327 (715)
Q Consensus 248 ~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~ 327 (715)
.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.++|.+...++.+|..++...||||||||||.
T Consensus 207 ~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 328 IGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 328 l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
++.++.. ..+.+..+++++||.++|++..+.+++||++||+++.||++++||||||++|.|++|+.++|.+||+.|+
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHH
Confidence 9876643 3456678899999999999998899999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccccccccccchhhhhhhhHHH
Q 005066 405 SKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHE 484 (715)
Q Consensus 405 ~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hE 484 (715)
++.....++++..++..+.||+|+||.++|++|++.|++++...|+++||+.|++++++|.++++ ..++++++++||||
T Consensus 367 ~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hE 445 (638)
T CHL00176 367 RNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHE 445 (638)
T ss_pred hhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHh
Confidence 98777778899999999999999999999999999999999999999999999999999988764 56788999999999
Q ss_pred hhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHH
Q 005066 485 GGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQ 564 (715)
Q Consensus 485 aGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~ 564 (715)
+||||+++++++.++|+||||+|||+++|||++.|+++.+.+||.+|+++|++||||||||+++||+.++|+|+++||++
T Consensus 446 aGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~ 525 (638)
T CHL00176 446 VGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQ 525 (638)
T ss_pred hhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHhCCCCcccceecccCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHH
Q 005066 565 ATKLARAMVTKYGMSKEVGVVTHNYDDN-----------GKSMSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHAL 633 (715)
Q Consensus 565 AT~lA~~mV~~~Gms~~~G~~~~~~~~~-----------~~~~s~~~~~~id~ev~~ll~~a~~ra~~iL~~~r~~L~~l 633 (715)
||++|+.||++||||+ +|++.+..... ...+|+++...||.||+++|++||++|++||++|++.|++|
T Consensus 526 AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~l 604 (638)
T CHL00176 526 VTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLL 604 (638)
T ss_pred HHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999994 99998753322 13579999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhh
Q 005066 634 ANALLEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 634 A~~Lle~etL~~~ei~~il~~~~ 656 (715)
|++||++|||+++||++|++.+.
T Consensus 605 a~~Lle~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 605 VELLLQKETIDGDEFREIVNSYT 627 (638)
T ss_pred HHHHHHhCccCHHHHHHHHhhcC
Confidence 99999999999999999998653
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.5e-85 Score=762.73 Aligned_cols=439 Identities=55% Similarity=0.885 Sum_probs=416.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
....+|+|+.|.+.+++++.+++.+++++..|..++...|+|+||+||||||||++++++++++++||+.++++++.+.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
++.+...++.+|..++...||||||||||.++.++.. +...+..+++++||.+||++..+.+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 9999999999999999999999999999999987754 3455677899999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++||||||++|.|++||.++|.+||+.|+++.....++|+..+++.|.||||+||.++|++|+..|+++++..|++.||
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~ 385 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 385 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHH
Q 005066 455 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLAR 534 (715)
Q Consensus 455 ~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~ 534 (715)
+.|++++.+|.++++..+++++++.+||||+||||++++++...+++||||+|||.++|||++.|+++.+.+||.+|+++
T Consensus 386 ~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~~~ 465 (644)
T PRK10733 386 EKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQ 465 (644)
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHHHH
Confidence 99999999999888778899999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCC----------CCCCCHHHHHHH
Q 005066 535 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN----------GKSMSTETRLLI 604 (715)
Q Consensus 535 i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~----------~~~~s~~~~~~i 604 (715)
|+|+|||||||+++||++++||||++||++||+||+.||++||||+++|++.|...+. .+.+|+++...|
T Consensus 466 i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~i 545 (644)
T PRK10733 466 ISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARII 545 (644)
T ss_pred HHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHH
Confidence 9999999999999999888999999999999999999999999999999998753221 246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhh
Q 005066 605 EKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 605 d~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~ 656 (715)
|+||+++|++||++|++||++|++.|++||++|+++|||+++||++|+....
T Consensus 546 d~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 546 DQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.9e-81 Score=711.26 Aligned_cols=434 Identities=57% Similarity=0.896 Sum_probs=410.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++++|+||+|++++|+++++++.++++++.|..+|...|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
.|.+...++.+|..++...||||||||||.++.++.. ....+..+++++||.+||++....+++||+|||+|+.||+
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 9999999999999999999999999999999987754 2345677899999999999998899999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++||||||++|+|++|+.++|.+||+.++++.....++++..++..+.|||++||.++|++|+..|.+++...|+.+||
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l 288 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDI 288 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 99999999999999999999999999999988777778899999999999999999999999999999999899999999
Q ss_pred HHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHH
Q 005066 455 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLAR 534 (715)
Q Consensus 455 ~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~ 534 (715)
..|++++..|.+++...+++++++++|+||+||||+++++++..+++++||.|||.++||+++.|.++....|+.+++++
T Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~ 368 (495)
T TIGR01241 289 EEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQ 368 (495)
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHH
Confidence 99999999998887777899999999999999999999998889999999999999999999999888889999999999
Q ss_pred HHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCC----------CCCCCCHHHHHHH
Q 005066 535 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDD----------NGKSMSTETRLLI 604 (715)
Q Consensus 535 i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~----------~~~~~s~~~~~~i 604 (715)
|+|||||||||+++||+ +|+|+++||++||++|+.||.+|||++++|++.+.... ..+.+|+.++..+
T Consensus 369 i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~i 446 (495)
T TIGR01241 369 IAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREI 446 (495)
T ss_pred HHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHH
Confidence 99999999999999994 89999999999999999999999999999999886432 1246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005066 605 EKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLA 653 (715)
Q Consensus 605 d~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~ 653 (715)
|.||+++|+++|++|++||++||+.|++||++|+++|+|+++||++|+.
T Consensus 447 d~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 447 DEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999973
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-63 Score=519.64 Aligned_cols=298 Identities=42% Similarity=0.639 Sum_probs=269.1
Q ss_pred CccCCCCCCeEEEeccCcchhHHHHHHHHHH-HHHHHHHHhhhhhhhhhccccccCCccccCCC-------CCCCCCCcc
Q 005066 154 GVLGTASAPIHMVAAEGGHFKEQLWRTIRTI-ALGFLLISGVGALIEDRGISKGLGLHEEVQPS-------LESNTKFSD 225 (715)
Q Consensus 154 ~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~d 225 (715)
++++++.+|.|||.+.+......+..+++.. -...+.+.. -++.+.+|. ..|+++|+|
T Consensus 87 ~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~--------------vLp~~~Dp~V~~M~v~e~PdvtY~d 152 (406)
T COG1222 87 AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVR--------------VLPPEVDPRVSVMEVEEKPDVTYED 152 (406)
T ss_pred EEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeee--------------eCCCccCchhheeeeccCCCCChhh
Confidence 7899999999999998876666655554421 111111111 123333332 247899999
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH
Q 005066 226 VKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 304 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~ 304 (715)
|+|+++++++|+|.|+. |++|+.|..+|+++|+|||||||||||||+||||+|++.+..|+.+.+|+|+.+|+|++++.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGR 381 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgR 381 (715)
+|++|..|+.++||||||||||+++++|.. +++.+.++++.+||++||||...++|.||+|||+++.|||||+||||
T Consensus 233 VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR 312 (406)
T COG1222 233 VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGR 312 (406)
T ss_pred HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCc
Confidence 999999999999999999999999998854 45678999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 382 FDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 382 Fd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
|||.|+||+||.++|.+||+.|.+++....++|++.|++.|+|+|||||.++|.+|.++|.|+.+..|+++||.+|++++
T Consensus 313 ~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 313 FDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred ccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 005066 462 MMGS 465 (715)
Q Consensus 462 ~~g~ 465 (715)
+...
T Consensus 393 ~~~~ 396 (406)
T COG1222 393 VKKK 396 (406)
T ss_pred Hhcc
Confidence 8754
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.9e-55 Score=527.19 Aligned_cols=308 Identities=22% Similarity=0.251 Sum_probs=267.5
Q ss_pred HhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH-------------------------------
Q 005066 249 FTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF------------------------------- 297 (715)
Q Consensus 249 ~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~------------------------------- 297 (715)
+.++|..+|+||||+||||||||+||||+|+++++||+.+++++|.+.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4678999999999999999999999999999999999999999988543
Q ss_pred ----------h--hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---cCCCEEE
Q 005066 298 ----------V--GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---QNEGIIV 362 (715)
Q Consensus 298 ----------v--g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---~~~~ViV 362 (715)
+ +++..+++.+|+.|++.+||||||||||+++.+. ....++++|+.+|+++. ...+|+|
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cceehHHHHHHHhccccccCCCCCEEE
Confidence 1 2233458999999999999999999999998652 12235899999999864 4568999
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh--hhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM--SKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAAL 439 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l--~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~ 439 (715)
|||||+|+.|||||+||||||++|+|+.|+..+|.+++...+ ++..... .+|+..+|+.|+|||||||.++|++|++
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988643 3443333 3689999999999999999999999999
Q ss_pred HHHHcCCCccCHHHHHHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeC------CCccc
Q 005066 440 KAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPR------GMSLG 513 (715)
Q Consensus 440 ~A~~~~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~pr------g~~lG 513 (715)
.|+++++..|+.++|+.|++++++|.+.+.. +..++ .+++||+||||++..+.+..||++|||+|+ |.++|
T Consensus 1856 iAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl 1932 (2281)
T CHL00206 1856 ISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYL 1932 (2281)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccce
Confidence 9999999999999999999999999876532 33333 369999999999999999999999999632 55789
Q ss_pred eEEecCCCccccccHHHHHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCc
Q 005066 514 MVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKE 581 (715)
Q Consensus 514 ~~~~~p~~~~~~~tr~~l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~ 581 (715)
|++++|.+ +++++.+++.+|.+||||||||+++|+... .+..||+.|||.+.
T Consensus 1933 ~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1933 YKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred eEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 99999876 899999999999999999999999998632 57889999999887
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-50 Score=449.26 Aligned_cols=245 Identities=43% Similarity=0.731 Sum_probs=236.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
-++++|+||+|++++|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++||++|++++.+|+.+.+.++.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
|+|++++.++++|++|+..+|||||+||||++...|++.......+++++||++|||+....+|+|||+||+|+.||+||
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~AL 587 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPAL 587 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHH
Confidence 99999999999999999999999999999999999987666778999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--CCccCHHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG--AKAVTMADL 454 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~--~~~It~edl 454 (715)
+||||||+.|+||+||.+.|.+||+.++++....+++|+..||..|+||||+||.++|++|+..|.++. ...|+.+||
T Consensus 588 lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf 667 (693)
T KOG0730|consen 588 LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHF 667 (693)
T ss_pred cCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999885 568999999
Q ss_pred HHHHHHHh
Q 005066 455 EYAKDKIM 462 (715)
Q Consensus 455 ~~A~~~i~ 462 (715)
++|+..+.
T Consensus 668 ~~al~~~r 675 (693)
T KOG0730|consen 668 EEALKAVR 675 (693)
T ss_pred HHHHHhhc
Confidence 99998663
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-49 Score=395.75 Aligned_cols=306 Identities=35% Similarity=0.523 Sum_probs=266.9
Q ss_pred ccCccCCCCCCeEEEeccCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCccccCCCCCCCCCCccCCCcHH
Q 005066 152 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVDE 231 (715)
Q Consensus 152 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~d~ 231 (715)
..+|+|+..+..|||-.-+.... ++++.-.++.+.-..-..+..+....+.+. .-+.|...|++++.||+|+|-
T Consensus 89 nt~ivgsttgsny~vrilstidr-ellkps~svalhrhsnalvdvlppeadssi-----~ml~~~ekpdvsy~diggld~ 162 (408)
T KOG0727|consen 89 NTAIVGSTTGSNYYVRILSTIDR-ELLKPSASVALHRHSNALVDVLPPEADSSI-----SMLGPDEKPDVSYADIGGLDV 162 (408)
T ss_pred cCceeecccCCceEEeehhhhhH-HHcCCccchhhhhcccceeeccCCcccccc-----cccCCCCCCCccccccccchh
Confidence 35899999999999988776444 444333344332222222222222211111 123344568899999999999
Q ss_pred HHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHH
Q 005066 232 AKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFS 310 (715)
Q Consensus 232 ~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~ 310 (715)
+|++++|.++. |.+.+.|++.|+++|+|||||||||||||+||+++|+.....|+.+.+|+|..+|.|++.+.+|++|+
T Consensus 163 qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfr 242 (408)
T KOG0727|consen 163 QKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFR 242 (408)
T ss_pred hHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccc
Q 005066 311 AAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIV 387 (715)
Q Consensus 311 ~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~ 387 (715)
.|+.++|+||||||||++..+|.. +.+.+.++++.+||++||||.+..+|.||++||+.+.|||+|+||||+|+.|+
T Consensus 243 lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkie 322 (408)
T KOG0727|consen 243 LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 322 (408)
T ss_pred HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCcccccccc
Confidence 999999999999999999988854 45677899999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 388 VPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
||+||..+++-+|..+..++.+.+++|++.+..+.+..||+||..+|++|.+.|.++++-.|...||++|....+.
T Consensus 323 fplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 323 FPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred CCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987653
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-49 Score=405.84 Aligned_cols=321 Identities=33% Similarity=0.517 Sum_probs=275.5
Q ss_pred cccccccccCCcc---------ccCccCCCCCCeEEEeccCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCC
Q 005066 139 GGISAFKNVGKPT---------KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGL 209 (715)
Q Consensus 139 ~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (715)
..+..++...+.+ ..+|+.++.+|.|||.+-++..+..+-.+|.. ++..-..+.+|.+.++.+. +
T Consensus 97 ~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsv-ll~~k~~avvGvL~d~~dp-----m 170 (440)
T KOG0726|consen 97 SKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSV-LLNHKVHAVVGVLQDDTDP-----M 170 (440)
T ss_pred hHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCee-eeccccceEEEEeccCCCc-----c
Confidence 3455566544432 35789999999999999887555544444432 2222223334444333211 1
Q ss_pred ccccCCCCCCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 210 HEEVQPSLESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 210 ~~~~~~~~~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..-++....|.-+|+||+|++.++++++|.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+
T Consensus 171 v~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv 250 (440)
T KOG0726|consen 171 VSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV 250 (440)
T ss_pred ceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence 111112224677999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC---CCchHHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 289 SGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN---PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 289 s~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~---~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
.++++..+|.|.+.+.+|++|+-|..++|+|+||||||+++.+|- ++...+.++++.+||+++|||...+.|.||++
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 999999999999999999999999999999999999999999884 34567899999999999999999999999999
Q ss_pred cCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 366 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 366 TN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
||+.+.|||+|.||||+|+.|+||.||...+..||..|..++.+..+++++.+....+.+||+||..+|.+|.++|.|+.
T Consensus 331 Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 331 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHhccc
Q 005066 446 AKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 446 ~~~It~edl~~A~~~i~~g~ 465 (715)
+..|+++||.+|.++++...
T Consensus 411 Rm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 411 RMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HhhccHHHHHHHHHHHHHhc
Confidence 99999999999999988643
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-48 Score=424.57 Aligned_cols=245 Identities=41% Similarity=0.657 Sum_probs=232.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
|+++|+||+|+++++.+|...|.+ +++|+.|+.+|...|.|||||||||||||+||||+|+|.+.+|+.+.+.++.++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 789999999999999999988877 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 377 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl 377 (715)
+|++++.+|.+|..|+..+|||||+||||+|.++|+........+++|+||++|||.....+|.||++||+||.+|||++
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiL 665 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAIL 665 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhc
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHhh--hhccCCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHcC--------
Q 005066 378 RPGRFDRHIVVPNPDVEGRRQIMESHMS--KVLKADDVDLMIIARGTP--GFSGADLANLVNIAALKAAMDG-------- 445 (715)
Q Consensus 378 RpgRFd~~I~v~~Pd~~eR~~ILk~~l~--~~~~~~dvdl~~la~~t~--G~sgadI~~lv~~A~~~A~~~~-------- 445 (715)
||||||+.++|++|+.++|.+||+.+.+ +..+..|||++.|++.+. ||||+||..||++|.+.|.++.
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~ 745 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE 745 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999999999 677889999999999876 9999999999999999998741
Q ss_pred --------CCccCHHHHHHHHHHHhc
Q 005066 446 --------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 --------~~~It~edl~~A~~~i~~ 463 (715)
...+++.||++|+.++.+
T Consensus 746 ~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 746 DDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred cccceeeeeeeecHHHHHHHHHhcCC
Confidence 114778899999998855
No 13
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-49 Score=407.04 Aligned_cols=354 Identities=33% Similarity=0.508 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhhcccccc-hhhhccccccccccCCcc---------ccCccCCCCCCeEEEec
Q 005066 99 QSALSEYVKALVKVDRLDDSELLKTLQKGIANSAR-DEESIGGISAFKNVGKPT---------KDGVLGTASAPIHMVAA 168 (715)
Q Consensus 99 ~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~~ 168 (715)
..++..|.+.|..++..+. .++..+.......+ +.++++++++++++|+.+ ...|++.+++|.|+|.|
T Consensus 6 ~~al~~~r~~L~~~~~~~~--~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~ 83 (388)
T KOG0651|consen 6 NKALAEYRKPLLSHRSISS--ALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGC 83 (388)
T ss_pred HHHHHHhhhhhhhccchhh--HHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEc
Confidence 4678999999999998876 56666655554333 578888999999999964 34799999999999999
Q ss_pred cCcchhHHHHHHHHHHH-HHHHHHHhhhhhhhhhccccccCCccccCCCCCCCCCCccCCCcHHHHHHHHHHHHH-hcCc
Q 005066 169 EGGHFKEQLWRTIRTIA-LGFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVDEAKQELEEIVHY-LRDP 246 (715)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~ 246 (715)
.....+.++..+.+..+ ++.+.++..- -....+ .-+.......+++|+++.|.-++..++++.++. |.+|
T Consensus 84 ~~~~D~~~i~~G~rv~ldittltIm~~l--prevd~------vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np 155 (388)
T KOG0651|consen 84 RRSVDKEKIARGTRVVLDITTLTIMRGL--PREVDL------VYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNP 155 (388)
T ss_pred ccccchhhhccCceeeeeeeeeehhccc--chHHHH------HHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCc
Confidence 98888888888887533 5555544310 000000 001111224578999999999999999999998 9999
Q ss_pred hhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 247 KRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 247 ~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
+.|.++|+++|+|++||||||||||++|+++|..+|++|+.++.+.+.++|.|++++.+|+.|..|+.+.||||||||||
T Consensus 156 ~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiD 235 (388)
T KOG0651|consen 156 ELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEID 235 (388)
T ss_pred hhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHH
Q 005066 327 AIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 327 ~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 403 (715)
++++++.. ..+...+++|.+|+.+|++|.....|.+|+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|
T Consensus 236 AigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 236 AIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred hhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 99998754 345778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 404 MSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 404 l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
...+.....+|.+.+.+..+||+|+|+++.|++|.++|.++.+..+-++|+..++.++-
T Consensus 316 ~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 316 VQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred cccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999988764
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-48 Score=388.80 Aligned_cols=262 Identities=40% Similarity=0.658 Sum_probs=247.9
Q ss_pred cCCccccCCCC-------CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHH
Q 005066 207 LGLHEEVQPSL-------ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 207 ~~~~~~~~~~~-------~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA 278 (715)
..++..++|++ .++++++||+|+.++++.|+|+++. |.+|++|-.+|+.+|+|||||||||||||++|+|+|
T Consensus 153 lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 153 LPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred ccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 44566666654 4789999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccc
Q 005066 279 GEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 279 ~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
+..+..|+.+-+|+++.+|+|++++.+|++|+.|+...-||||+||||++++.|.. ++..+.++++.+|+++||||.
T Consensus 233 nrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd 312 (435)
T KOG0729|consen 233 NRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 312 (435)
T ss_pred cccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999998854 456789999999999999999
Q ss_pred cCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHH
Q 005066 356 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 435 (715)
Q Consensus 356 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~ 435 (715)
..+++.|+++||+|+.|||+|+||||+|+.++|.+||.++|..||+.|.+.+....++-++.||+.++..+|++|+.+|.
T Consensus 313 prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 313 PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhcccccc
Q 005066 436 IAALKAAMDGAKAVTMADLEYAKDKIMMGSERK 468 (715)
Q Consensus 436 ~A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~ 468 (715)
+|.++|.+..++..|..||-+|+++++.|-.+-
T Consensus 393 eagmfairarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 393 EAGMFAIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999886553
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=376.69 Aligned_cols=246 Identities=41% Similarity=0.657 Sum_probs=237.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
|+.+++-|+|.|.++++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+++|....+.|+.++++++..+|
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 677899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
+|++.+.+|++|-.|+.++|+|||+||||.++..|.. +++.+.++++.+||+++|||....++.||++||+.+.|||
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~ 301 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP 301 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence 9999999999999999999999999999999988754 3567899999999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+|+||||+|+.|+||+|+.+.|.+||+.|.++..+...+|+..+|....|.||+++..+|.+|.++|.++.+-.||++||
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedf 381 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 381 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 005066 455 EYAKDKIMMG 464 (715)
Q Consensus 455 ~~A~~~i~~g 464 (715)
+-|+.+++.-
T Consensus 382 emav~kvm~k 391 (404)
T KOG0728|consen 382 EMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-45 Score=370.68 Aligned_cols=245 Identities=40% Similarity=0.647 Sum_probs=235.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.|+-+++||+|++.++++|-|.+-. +.++++|..+|+++|+|+|+|||||||||++||+.|...+..|+.+.+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 4677899999999999999888777 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|.+++.+|+.|..|+..+|+||||||+|++|.+|..+ +..+.++++.+||++||||..+..|.||++||+.+.||
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 999999999999999999999999999999999998653 45778999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
|+|+|+||+|+.|+||.|+.+.|.+|++.|.+++....|++++.+++.|++|+|++...+|-+|.+.|.+++...|+.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005066 454 LEYAKDKIM 462 (715)
Q Consensus 454 l~~A~~~i~ 462 (715)
|.+++..+.
T Consensus 405 fmegI~eVq 413 (424)
T KOG0652|consen 405 FMEGILEVQ 413 (424)
T ss_pred HHHHHHHHH
Confidence 999887664
No 17
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=3.8e-45 Score=372.28 Aligned_cols=202 Identities=49% Similarity=0.740 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHH
Q 005066 450 TMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRK 529 (715)
Q Consensus 450 t~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~ 529 (715)
|++||++|+++++.|.+++...+++++++++||||||||||++++++..+|++|||+|||.++||+.+.|.++.+..||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 68999999999999999877788999999999999999999999998899999999999999999999999888889999
Q ss_pred HHHHHHHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCC-----------CCCCCH
Q 005066 530 QMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-----------GKSMST 598 (715)
Q Consensus 530 ~l~~~i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~-----------~~~~s~ 598 (715)
+|+++|+|||||||||+++||.+++|+|+++||++||+||+.||.+||||+++|++++...++ ..++|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999888999999999999999999999999999999998765433 136899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 005066 599 ETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKAL 651 (715)
Q Consensus 599 ~~~~~id~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~i 651 (715)
+++..++.||+++|+++|++|++||++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999986
No 18
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=400.96 Aligned_cols=227 Identities=44% Similarity=0.696 Sum_probs=217.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
+++++|+||+|.|....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+++|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC----CCEEEEeecCCCCccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN----EGIIVIAATNFPESLD 373 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~----~~ViVIaaTN~p~~LD 373 (715)
.|++++++|++|+.|+..+|||+||||||+++++|.....+-.++++.+||+.||++... .+|+||+|||+||.||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999998876666778999999999988654 6799999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
|+|+|+||||+.|.+..|+...|.+||+..+++..+..++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=391.43 Aligned_cols=306 Identities=33% Similarity=0.491 Sum_probs=257.0
Q ss_pred ccCccCCCCCCeEEEeccCcchhHHHHHHHHHHH-HHHHHHHhhhhhhhhhccccccCCccccCCCCCCCCCCccCCCcH
Q 005066 152 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIA-LGFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVD 230 (715)
Q Consensus 152 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~d 230 (715)
+.+|+++..+|.++|.+.+......+..+.+..+ .....+. ..+.... . .....+.....++++|+||+|++
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~----~-~~~~~~~~~~~p~v~~~digGl~ 151 (398)
T PTZ00454 79 NYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVV--DILPPEA----D-SSIQLLQMSEKPDVTYSDIGGLD 151 (398)
T ss_pred CEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHH--Hhccccc----c-chhhhhcccCCCCCCHHHcCCHH
Confidence 3478899999999998766544444333322110 0000000 0000000 0 00011112235789999999999
Q ss_pred HHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHH
Q 005066 231 EAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLF 309 (715)
Q Consensus 231 ~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF 309 (715)
.+|++|++.+.+ +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++...|+|.+...++++|
T Consensus 152 ~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf 231 (398)
T PTZ00454 152 IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVF 231 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHH
Confidence 999999999986 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccccc
Q 005066 310 SAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHI 386 (715)
Q Consensus 310 ~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I 386 (715)
..++..+||||||||||.++.++.. +......+++.+|+..++++....+++||++||+++.|||+++||||||++|
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 311 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEE
Confidence 9999999999999999999877632 2334577889999999999988889999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005066 387 VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 387 ~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g 464 (715)
+|++|+.++|.+||+.++.+.....++|+..++..|.||||+||.++|++|++.|.++++..|+++||..|++++..+
T Consensus 312 ~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 312 EFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999988888899999999999999999999999999999999999999999999999998654
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2e-43 Score=356.17 Aligned_cols=240 Identities=42% Similarity=0.629 Sum_probs=224.4
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 217 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 217 ~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
..++++|+||+|++++|+..+-+++||+||++|..+ .|++||||||||||||++|+++|+++++||+.+.+.++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 346899999999999999999999999999988654 57899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK-DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~a 375 (715)
++|.++++++++|..|++.+|||+||||+|+++-.|.-. .......++|.||++|||+..+.+|+.|++||+|+.||++
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 999999999999999999999999999999998665432 2344677899999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHcCCCccCHHHH
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLA-NLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~-~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++ ||...|+|.+|+.++|.+|++.++++..+.-+.++..++..|.|+||+||. .++..|...|..+++..|+.+||
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 998 999999999999999999999999999988889999999999999999996 78999999999999999999999
Q ss_pred HHHHHHH
Q 005066 455 EYAKDKI 461 (715)
Q Consensus 455 ~~A~~~i 461 (715)
++|+.+.
T Consensus 349 e~al~k~ 355 (368)
T COG1223 349 EKALKKE 355 (368)
T ss_pred HHHHHhh
Confidence 9999973
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-42 Score=385.79 Aligned_cols=245 Identities=38% Similarity=0.654 Sum_probs=224.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
-|+++|+||+|.+++|.++.+-|.. |++|+.|.. |.+...|||||||||||||++|||+|.++...|+.+.+.++.++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 3789999999999999999999998 999998875 77778899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccc--cCCCEEEEeecCCCCcc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFK--QNEGIIVIAATNFPESL 372 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~Ld~~~--~~~~ViVIaaTN~p~~L 372 (715)
|+|+++.++|++|++||..+|||||+||+|.+.++|...+ ..-+++++.|||.+||++. ...+|+||+|||+||.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999886543 3578999999999999998 46789999999999999
Q ss_pred cccccCCCCcccccccCCC-CHHHHHHHHHHHhhhhccCCcccHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHcC-----
Q 005066 373 DKALVRPGRFDRHIVVPNP-DVEGRRQIMESHMSKVLKADDVDLMIIARGT-PGFSGADLANLVNIAALKAAMDG----- 445 (715)
Q Consensus 373 D~aLlRpgRFd~~I~v~~P-d~~eR~~ILk~~l~~~~~~~dvdl~~la~~t-~G~sgadI~~lv~~A~~~A~~~~----- 445 (715)
||+|+||||||+-+++.++ |.+.+..||+...++..++++||+..||+.+ +.|||||+-.||..|.+.|.++.
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie 904 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIE 904 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999665 5677889999999999999999999999886 47999999999999999998651
Q ss_pred ------------CCccCHHHHHHHHHHHhc
Q 005066 446 ------------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 ------------~~~It~edl~~A~~~i~~ 463 (715)
.-.|+++||-++.++..+
T Consensus 905 ~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 905 SGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred hccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 125899999999998765
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=377.01 Aligned_cols=305 Identities=38% Similarity=0.567 Sum_probs=256.7
Q ss_pred cCccCCCCCCeEEEeccCcchhHHHHHHHHHHHHH-HHHHHhhhhhhhhhccccccCCccccCCCCCCCCCCccCCCcHH
Q 005066 153 DGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALG-FLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVDE 231 (715)
Q Consensus 153 ~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~d~ 231 (715)
..|+.+..+|.|+|.+.+......+-.+....+.. ...+ ++.+....+ .+...+.....+.++|+||+|+++
T Consensus 118 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~--~~~~~~~~d-----~~~~~~~~~~~p~~~~~DIgGl~~ 190 (438)
T PTZ00361 118 HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSV--VGILLDEVD-----PLVSVMKVDKAPLESYADIGGLEQ 190 (438)
T ss_pred eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCce--EecCccccc-----hhhhhcccccCCCCCHHHhcCHHH
Confidence 47888999999999887765444444333211100 0000 001000000 000111122246789999999999
Q ss_pred HHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHH
Q 005066 232 AKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFS 310 (715)
Q Consensus 232 ~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~ 310 (715)
++++|++.+++ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...|.|.+...++.+|.
T Consensus 191 qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~ 270 (438)
T PTZ00361 191 QIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFR 270 (438)
T ss_pred HHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHH
Confidence 99999999987 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccc
Q 005066 311 AAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIV 387 (715)
Q Consensus 311 ~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~ 387 (715)
.|+...||||||||||.++.++.. +......+++.+||..++++....++.||++||+++.||++++||||||++|+
T Consensus 271 ~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~ 350 (438)
T PTZ00361 271 VAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIE 350 (438)
T ss_pred HHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEE
Confidence 999999999999999999977643 23455678889999999999888899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005066 388 VPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g 464 (715)
|++||.++|.+||+.++.+.....++|+..++..+.||||+||.++|++|++.|.++++..|+.+||..|+++++..
T Consensus 351 ~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 351 FPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999998653
No 23
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=362.66 Aligned_cols=243 Identities=38% Similarity=0.587 Sum_probs=222.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||.|++++|+-|+|.|-. +.-|+.|+. ..++-||||++||||||||+||||+|.|++..||.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 5789999999999999999999887 888987763 34556899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccC-CC---EEEEeecCCCCc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQN-EG---IIVIAATNFPES 371 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~Ld~~~~~-~~---ViVIaaTN~p~~ 371 (715)
|-|++++.+|-+|+.|+.++|++|||||||+|+.+|.. .+++...++.++||.+|||.... ++ |+|+++||.|+.
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 99999999999999999999999999999999998865 56788899999999999997543 23 899999999999
Q ss_pred ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------
Q 005066 372 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------ 445 (715)
Q Consensus 372 LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------ 445 (715)
||+||+| ||...|+||+||.++|..+++..++.....++++++.|+..++||||+||.++|++|.+++.|+.
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998741
Q ss_pred -----------CCccCHHHHHHHHHHHhc
Q 005066 446 -----------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 -----------~~~It~edl~~A~~~i~~ 463 (715)
...|+++||+.|+.++-+
T Consensus 443 ~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 443 REIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 235889999999988754
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.7e-40 Score=365.08 Aligned_cols=250 Identities=46% Similarity=0.705 Sum_probs=234.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|.++++++|++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4688999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|.|.+...++.+|..++...||||||||+|.++.++... ......+++.+++.+++++....+++||+|||+++.+|
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 999999999999999999999999999999998776432 23456788899999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
++++||||||+.|+||+|+.++|.+||+.++++.....++++..++..|.||+|+||.++|++|++.|.+++...|+.+|
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d 364 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMED 364 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q 005066 454 LEYAKDKIMMGSER 467 (715)
Q Consensus 454 l~~A~~~i~~g~~~ 467 (715)
|..|++++..+...
T Consensus 365 ~~~A~~~~~~~~~~ 378 (389)
T PRK03992 365 FLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHhccccc
Confidence 99999999775544
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=367.10 Aligned_cols=245 Identities=47% Similarity=0.751 Sum_probs=232.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.+.++|+|++|.+++|+++++.+++ ++.++.|...+..+|+|+|||||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 5789999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
|+|++++.++.+|..|+..+||||||||+|++...|.........+++++||.+|++.....+|+||++||+|+.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987776666899999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhc--cCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-CCccCHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL--KADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-AKAVTMAD 453 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~--~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-~~~It~ed 453 (715)
+||||||+.|+||+||.++|.+||+.|++... ...++|+..+++.|.||+|+||.++|++|.+.+.++. ...|+++|
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~ 475 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDD 475 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHH
Confidence 99999999999999999999999999998543 3578999999999999999999999999999999988 78899999
Q ss_pred HHHHHHHHh
Q 005066 454 LEYAKDKIM 462 (715)
Q Consensus 454 l~~A~~~i~ 462 (715)
|..|+.++.
T Consensus 476 ~~~a~~~~~ 484 (494)
T COG0464 476 FLDALKKIK 484 (494)
T ss_pred HHHHHHhcC
Confidence 999998843
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-39 Score=357.38 Aligned_cols=228 Identities=39% Similarity=0.671 Sum_probs=218.7
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 217 LESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 217 ~~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
.....+|+||+|+.++|+.|++++++ -+.|..|...+.+.+.|||||||||||||+||.++|..++..|+.+.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34568999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccc
Q 005066 296 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~a 375 (715)
+|+|.++..+|++|..|+..+|||||+||+|.+.++|+.....-..+++|+||++|||.+.-.+|.|+|+|.+|+.||||
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPA 819 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHh
Confidence 99999999999999999999999999999999999998777777899999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
|+||||+|+.++-|.|+..+|.+|++...+......++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888999999999999999999999999999998888653
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-39 Score=337.48 Aligned_cols=225 Identities=42% Similarity=0.665 Sum_probs=212.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg-~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
+..++|+||+|++++|+.|++.|-. ++.|+.|..-+ ..+|+||||+||||||||++|+++|.++|.+|+.++.+.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 5688999999999999999999998 99999996322 357899999999999999999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC--EEEEeecCCCCccc
Q 005066 296 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG--IIVIAATNFPESLD 373 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~--ViVIaaTN~p~~LD 373 (715)
++.|+..+.++.+|..|.+.+||||||||+|.+.+.|.+.+++.+...-++++...||+..+++ |+|+||||+|..||
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD 245 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD 245 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHH
Confidence 9999999999999999999999999999999999999888999999999999999999988776 99999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
.|++| |+.+.++|+.|+..+|.+||+.++++....+++|+..+|..|.||||.||.++|+.|+....++
T Consensus 246 eAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 246 EAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred HHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999999999887653
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-38 Score=376.09 Aligned_cols=245 Identities=44% Similarity=0.727 Sum_probs=228.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
++++|+||+|++++|++|++.+.+ +++++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 578999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK-DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
+|.++..++.+|..|+...||||||||||.+++.+... ......+.+++||.+||++....+++||+|||+|+.||+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 99999999999999999999999999999999877643 23446788999999999998889999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-----------
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG----------- 445 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~----------- 445 (715)
+||||||++|+||+||.++|.+||+.+.++.....++|+..+|..|.||||+||.++|++|++.|.++.
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Confidence 999999999999999999999999999998888889999999999999999999999999999988742
Q ss_pred -------CCccCHHHHHHHHHHHhc
Q 005066 446 -------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 -------~~~It~edl~~A~~~i~~ 463 (715)
...|+++||..|+.++.+
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCC
Confidence 126999999999987643
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.9e-38 Score=353.71 Aligned_cols=241 Identities=28% Similarity=0.424 Sum_probs=215.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++.+|+||+|++.+|++|++....+ +..+...|...|+|+||+||||||||++|+++|++++.||+.++++.+..+|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999999765543 2345667999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC-CCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN-PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~-~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
+|.++.+++.+|..++..+||||||||||.++..+. ..+.....++++.|+..|+. ...+|+||+|||+++.||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 999999999999999999999999999999987543 33455677889999998884 457899999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccC--CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA--DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~--~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+|+||||+.|+|+.|+.++|.+||+.|+++.... .+.|+..++..|.||||+||+++|++|...|..++ +.++.+||
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl 456 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDI 456 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHH
Confidence 9999999999999999999999999999886432 47889999999999999999999999999998766 67899999
Q ss_pred HHHHHHHhc
Q 005066 455 EYAKDKIMM 463 (715)
Q Consensus 455 ~~A~~~i~~ 463 (715)
..|+.++.+
T Consensus 457 ~~a~~~~~P 465 (489)
T CHL00195 457 LLALKQFIP 465 (489)
T ss_pred HHHHHhcCC
Confidence 999998875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.7e-37 Score=340.12 Aligned_cols=244 Identities=48% Similarity=0.731 Sum_probs=228.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|.++++++|++.+.+ +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 4788999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|.|.+...++.+|..++...|+||||||+|.++.++... ........+.+++.+++++...+++.||+|||+++.+|
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 999999999999999999999999999999998765432 23456778899999999988888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
++++||||||+.|+|+.|+.++|.+||+.++.+.....++++..++..+.||+|+||.++|++|+..|.++++..|+.+|
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d 355 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDD 355 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 99999999999999999999999999999998887777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005066 454 LEYAKDKI 461 (715)
Q Consensus 454 l~~A~~~i 461 (715)
|..|++++
T Consensus 356 ~~~a~~~~ 363 (364)
T TIGR01242 356 FIKAVEKV 363 (364)
T ss_pred HHHHHHHh
Confidence 99999876
No 31
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-38 Score=324.33 Aligned_cols=223 Identities=38% Similarity=0.660 Sum_probs=204.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.|+++|+||.|++.+|+.|+|.|-. ++-|..|.. +.++-+||||||||||||+.||+|+|.+++..||.++.|+++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 4789999999999999999998887 888887763 33455899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEeecCCCCccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~-~~~~ViVIaaTN~p~~LD~a 375 (715)
|.|++++.++.+|+.|+.+.|+||||||||.+++.|..+..+...++..+||.+|.|.- .+++|+|+++||-|+.||.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874 45689999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
++| ||++.|+||+|+...|..+++.|+..... ..+-|+..|++.|+||||+||.-+|+.|.+.-.|
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 999 99999999999999999999999987633 3466899999999999999999999988776655
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.8e-35 Score=331.28 Aligned_cols=260 Identities=30% Similarity=0.484 Sum_probs=216.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC----------eE
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP----------FF 286 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~----------fi 286 (715)
.++++|+||+|++++++++++.+.. +.+|+.|...|..+|+|+|||||||||||++|+++|++++.+ |+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 4689999999999999999999887 899999999999999999999999999999999999998654 66
Q ss_pred EeeccchhhhHhhhhHHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhccccCCCEE
Q 005066 287 SCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGFKQNEGII 361 (715)
Q Consensus 287 ~is~s~~~~~~vg~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~Ld~~~~~~~Vi 361 (715)
.++++++..+|+|+++..++.+|..++.. .||||||||+|.++.+|.... .+....++++||.+||++...++++
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 77888889999999999999999998763 699999999999998775432 3344677899999999998888999
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC----------CcccHHHH-------------
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA----------DDVDLMII------------- 418 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~----------~dvdl~~l------------- 418 (715)
||+|||+++.|||+++||||||++|+|++|+.++|.+||+.++.+.... ...++..+
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~ 415 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSE 415 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999998753111 01111111
Q ss_pred ----------------HhcCCCCCHHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHHhccccccccccchhhh
Q 005066 419 ----------------ARGTPGFSGADLANLVNIAALKAAMD----GAKAVTMADLEYAKDKIMMGSERKSAVISDESR 477 (715)
Q Consensus 419 ----------------a~~t~G~sgadI~~lv~~A~~~A~~~----~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~ 477 (715)
...++.+||++|.++|..|...|..+ +...|+++|+..|+..-....+..+....+++-
T Consensus 416 ~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w 494 (512)
T TIGR03689 416 ENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDW 494 (512)
T ss_pred ccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 12256789999999999999888765 456899999999998876655444444444433
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-33 Score=309.60 Aligned_cols=241 Identities=41% Similarity=0.590 Sum_probs=226.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
+++. .+++|+..+...+++++.+ +.++..|...|.++|+|+|+|||||||||++++++|++.++.++.+++.++..+|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 298 VGVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
.|++++.+|..|+.+.+++ |+||||||||.+++++..... ...++..+|+..||+.....+++||++||+|+.||+++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhh
Confidence 9999999999999999999 999999999999998865554 56788999999999999899999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
+| ||||+.+.|..|+..+|.+|++.+.+++...+++|+..++..+.||.|+||..+|++|.+.+.++ ++++|..
T Consensus 338 RR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~ 411 (693)
T KOG0730|consen 338 RR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQE 411 (693)
T ss_pred hc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHH
Confidence 99 99999999999999999999999999998888899999999999999999999999999999887 8899999
Q ss_pred HHHHHhccccc
Q 005066 457 AKDKIMMGSER 467 (715)
Q Consensus 457 A~~~i~~g~~~ 467 (715)
|...+.+...|
T Consensus 412 A~~~i~psa~R 422 (693)
T KOG0730|consen 412 ALMGIRPSALR 422 (693)
T ss_pred HHhcCCchhhh
Confidence 98877665544
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.4e-32 Score=289.81 Aligned_cols=260 Identities=19% Similarity=0.225 Sum_probs=196.0
Q ss_pred CCCCccC-CCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 220 NTKFSDV-KGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 220 ~~~f~dv-~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
..+|+++ .|+--.+..+..++-. -++. ...+|.++|++++||||||||||++|+++|+++|++|+.++++++.++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 4567787 6666666666554432 2221 1236789999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHH-HHHHHHhhcc------------ccCCC
Q 005066 298 VGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTL-NQLLVELDGF------------KQNEG 359 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l-~~LL~~Ld~~------------~~~~~ 359 (715)
+|++++.+|++|..|+. .+||||||||||++++++.........+.+ .+||+.+|+. ....+
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999999999999975 469999999999999988644333334444 6888888753 34567
Q ss_pred EEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCC----CCHHHHHHHHH
Q 005066 360 IIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPG----FSGADLANLVN 435 (715)
Q Consensus 360 ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G----~sgadI~~lv~ 435 (715)
|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..++| |+|+--..+..
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999864 5899999999999999987554 5788889998887 45665566666
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHh
Q 005066 436 IAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAV 492 (715)
Q Consensus 436 ~A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~ 492 (715)
++...-..+ +. ++..-.+++... +....+.......-..-|+||.++..
T Consensus 346 ~~v~~~i~~----~g---~~~~~~~l~~~~-~~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 346 DEVRKWIAE----VG---VENLGKKLVNSK-KGPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHH----hh---HHHHHHHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 554433221 11 222223333332 23344555556667788999999763
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.9e-32 Score=322.41 Aligned_cols=247 Identities=44% Similarity=0.671 Sum_probs=226.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
++++|+||+|.+++++.+++++.+ +++|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 678999999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 377 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl 377 (715)
.|.....++.+|..+....|+||||||||.+..++..........++++|+..|+++.....++||++||+++.||++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 99999999999999999999999999999999887654444456788999999999988889999999999999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------------
Q 005066 378 RPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------------ 445 (715)
Q Consensus 378 RpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------------ 445 (715)
|+|||++.+.++.|+.++|.+||+.+.+......++++..++..+.||+++||..+|++|+..+.++.
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999988877788899999999999999999999999998876541
Q ss_pred -------CCccCHHHHHHHHHHHhccc
Q 005066 446 -------AKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 446 -------~~~It~edl~~A~~~i~~g~ 465 (715)
...++.+||..|+..+.+..
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccchhcccccccHHHHHHHHhhccccc
Confidence 12578899999988776543
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=321.14 Aligned_cols=252 Identities=38% Similarity=0.593 Sum_probs=226.7
Q ss_pred CCCCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 216 SLESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 216 ~~~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.....+.|++|+|.+.++..|+|+|-+ |..|+.|..+++.+|+||||+||||||||+.|+++|..+ .+.|+.-.
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 345689999999999999999999998 999999999999999999999999999999999999988 57788889
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
+.+..++|+|+.++.++.+|+.|++..|+|||+||||-+.+.|.....+....++..||..|||....+.|+||+|||+|
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999999887776677778889999999999999999999999999
Q ss_pred CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC--
Q 005066 370 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA-- 446 (715)
Q Consensus 370 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~-- 446 (715)
+.+||+|+||||||+.++||+|+.+.|.+|+..|-.+..... ..-+..||..|.||.|+||+.+|.+|++.+.++.-
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 999999999999999999999999999999999988764222 22356799999999999999999999999987531
Q ss_pred --------------CccCHHHHHHHHHHHhccccc
Q 005066 447 --------------KAVTMADLEYAKDKIMMGSER 467 (715)
Q Consensus 447 --------------~~It~edl~~A~~~i~~g~~~ 467 (715)
..|...||-.|..++.+...+
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 247777888888887776555
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-32 Score=298.22 Aligned_cols=247 Identities=34% Similarity=0.494 Sum_probs=212.0
Q ss_pred CCCCCCCcc--CCCcHHHHHHH-H-HHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-CCeEEeecc
Q 005066 217 LESNTKFSD--VKGVDEAKQEL-E-EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-VPFFSCSGS 291 (715)
Q Consensus 217 ~~~~~~f~d--v~G~d~~k~eL-~-eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-~~fi~is~s 291 (715)
..|+-.|++ |+|+|.--..+ + .+...+-.|+...++|++.-||+|||||||||||++||.|..-++ .+--.+++.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 356778888 46777544443 2 333447788889999999999999999999999999999999986 455678999
Q ss_pred chhhhHhhhhHHHHHHHHHHHHh--------CCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEE
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKK--------RSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGII 361 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~--------~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~Vi 361 (715)
++.++|+|+++.++|.+|..|.. ..-.||++||||+++.+|.+. +..-...++||||.-|||..+-++|+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 99999999999999999998842 223699999999999988653 23456789999999999999999999
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh----ccCCcccHHHHHhcCCCCCHHHHHHHHHHH
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV----LKADDVDLMIIARGTPGFSGADLANLVNIA 437 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----~~~~dvdl~~la~~t~G~sgadI~~lv~~A 437 (715)
||+.||+.|.+|+||+|||||..++++.+||+.+|.+||+.|.+++ .+..|+|+..||.+|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 456799999999999999999999999999
Q ss_pred HHHHHHcC---------------CCccCHHHHHHHHHHHhc
Q 005066 438 ALKAAMDG---------------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 438 ~~~A~~~~---------------~~~It~edl~~A~~~i~~ 463 (715)
...|..+. .-.|+++||..|++.+.+
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 88887541 236899999999997755
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=291.41 Aligned_cols=243 Identities=36% Similarity=0.588 Sum_probs=213.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
..++.|+|+.|++.+|+.+.+.+-+ +..|..|..+- .+++|+||.||||||||+|+++||.|.+..|+.++++.+.++
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3568999999999999999999998 66688876542 356899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEeecCCCCcccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDK 374 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~--~~~ViVIaaTN~p~~LD~ 374 (715)
|+|++++.++.+|.-|+..+|+|+||||+|.++.+|.+..++...+...++|.++++... .+.|+||+|||+|+.+|.
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~De 305 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDE 305 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHH
Confidence 999999999999999999999999999999999999888888888889999999887644 457999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhh-ccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc---------
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-LKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD--------- 444 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~--------- 444 (715)
+++| ||.+.++||+||.+.|..+|+..+.+. ....+.|+..|++.|+|||+.||.++|.+|++-=.+.
T Consensus 306 a~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~ 383 (428)
T KOG0740|consen 306 AARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF 383 (428)
T ss_pred HHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh
Confidence 9999 999999999999999999999999877 2334568899999999999999999999997643322
Q ss_pred ----CCCccCHHHHHHHHHHHhc
Q 005066 445 ----GAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 445 ----~~~~It~edl~~A~~~i~~ 463 (715)
..+.|+..||+.++..+-+
T Consensus 384 ~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 384 IDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred cchhccCCCCcchHHHHHHhhcc
Confidence 2345667777777776644
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3.4e-21 Score=204.83 Aligned_cols=222 Identities=22% Similarity=0.322 Sum_probs=164.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC---eEEEEcCCCCChHHHHHHHHHHh-------CCCeEEeeccch
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK---GVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEF 293 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk---gvLL~GPPGTGKT~LAralA~el-------~~~fi~is~s~~ 293 (715)
++++|++++|+++++++.++..++.+...|...|. ++||+||||||||++|+++|..+ ..+|+.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 48999999999999999887767777777876553 48999999999999999999976 247999999999
Q ss_pred hhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC---
Q 005066 294 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--- 370 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~--- 370 (715)
...|+|..+..++.+|+.+. ++||||||+|.+...+.. .......+..|+..|+.. ..+++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 99999988888888888763 469999999999654322 223456677788878753 35678888876432
Q ss_pred --cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--CCccc---HHHHHhc--CCCCC-HHHHHHHHHHHHHH
Q 005066 371 --SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--ADDVD---LMIIARG--TPGFS-GADLANLVNIAALK 440 (715)
Q Consensus 371 --~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~--~~dvd---l~~la~~--t~G~s-gadI~~lv~~A~~~ 440 (715)
.++|+|.+ ||+.+|.|++|+.+++.+|++.++++... .++.. ...+.+. .+.|. ++++++++..|...
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 23588988 99999999999999999999999976532 22111 1112221 23444 89999999988766
Q ss_pred HHHc----CCCccCHHHH
Q 005066 441 AAMD----GAKAVTMADL 454 (715)
Q Consensus 441 A~~~----~~~~It~edl 454 (715)
-+.+ +...++.+|+
T Consensus 254 ~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 254 QANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHcCCCCCCCHHHH
Confidence 5432 3334555554
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=7.2e-21 Score=199.73 Aligned_cols=212 Identities=21% Similarity=0.293 Sum_probs=157.0
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCC---CeEEEEcCCCCChHHHHHHHHHHh-------CCCeEEeecc
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLP---KGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGS 291 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~p---kgvLL~GPPGTGKT~LAralA~el-------~~~fi~is~s 291 (715)
.+++++|++++|+.+++++.+..........|.+.+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999999988655454455666543 468999999999999999999875 3478999999
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC-
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 370 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~- 370 (715)
++...|+|.....++++|..+. ++||||||+|.+... .........++.|+..|+.. ...+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999999999998764 479999999999632 11223455678888888754 34566666554322
Q ss_pred ----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHh---------cCCCCCHHHHHHHHHH
Q 005066 371 ----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIAR---------GTPGFSGADLANLVNI 436 (715)
Q Consensus 371 ----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~---------~t~G~sgadI~~lv~~ 436 (715)
.++|+|.+ ||+..|.||.++.+++.+|++.++......-+.+ +..++. ....-+++.++|++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 36788887 9998999999999999999999997643221111 222211 1223468889999998
Q ss_pred HHHHHHH
Q 005066 437 AALKAAM 443 (715)
Q Consensus 437 A~~~A~~ 443 (715)
|....+.
T Consensus 234 a~~~~~~ 240 (261)
T TIGR02881 234 AIRRQAV 240 (261)
T ss_pred HHHHHHH
Confidence 8766653
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6e-21 Score=203.26 Aligned_cols=228 Identities=29% Similarity=0.424 Sum_probs=174.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+-.|++|+-...++..++++..--.|.+. ...+-++||||||||||||++|+-||...|..+-.+.+.+..-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 345599999999999999988876555443 33445689999999999999999999999999999988886432 2
Q ss_pred hhhHHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 299 GVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
..+...+.++|+.+++.. .-+|||||.|+++-+|+. ...+.....||.||-.-. .+...++++.+||+|..||.++
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHH
Confidence 345678999999997654 468999999999887764 345666778898885432 3556799999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-----------------------cc----HHHHHhcCCCCCHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-----------------------VD----LMIIARGTPGFSGAD 429 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-----------------------vd----l~~la~~t~G~sgad 429 (715)
.. |||..|+||+|..++|..||..|++++...++ .| +...|+.|.||||++
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 86 99999999999999999999999987642110 11 345688999999999
Q ss_pred HHHHHHHHHHHHHHcCC--CccCHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGA--KAVTMADLEYA 457 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~--~~It~edl~~A 457 (715)
|..|+ |...|.--++ ..++...|++.
T Consensus 581 iakLv--a~vQAavYgsedcvLd~~lf~e~ 608 (630)
T KOG0742|consen 581 IAKLV--ASVQAAVYGSEDCVLDEALFDER 608 (630)
T ss_pred HHHHH--HHHHHHHhcccchhhHHHHHHHH
Confidence 99987 3444443332 23444444433
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.2e-21 Score=181.76 Aligned_cols=130 Identities=47% Similarity=0.774 Sum_probs=117.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCCCchH
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNPKDQQ 338 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~ 338 (715)
|||+||||||||++++.+|+.++.+++.++++++.+.+.+.....++.+|..++... ||||||||+|.+..+.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999998887 9999999999998776445556
Q ss_pred HHHHHHHHHHHHhhccccC-CCEEEEeecCCCCcccccccCCCCcccccccCC
Q 005066 339 YMKMTLNQLLVELDGFKQN-EGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 390 (715)
Q Consensus 339 ~~~~~l~~LL~~Ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 390 (715)
.....++.|+..++..... .+++||++||.++.+++.++| +||+..|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 6778889999999987665 569999999999999999998 89999999874
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.1e-20 Score=200.82 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=162.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCC---CCeEEEEcCCCCChHHHHHHHHHHhC-------CCeEEeeccchh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKL---PKGVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGSEFE 294 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~---pkgvLL~GPPGTGKT~LAralA~el~-------~~fi~is~s~~~ 294 (715)
+++|++++|+.+++++.++..++.+.+.|... ..++||+||||||||++|+++|..+. .+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999998772 379999999998
Q ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC--Cc-
Q 005066 295 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP--ES- 371 (715)
Q Consensus 295 ~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p--~~- 371 (715)
..+.|.....++.+|+.+. +++|||||+|.+...+.. .......++.|+..|+. ...+++||++++.. +.
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHH
Confidence 8888988888888888763 479999999998644322 22345566777877774 34677888887643 22
Q ss_pred --ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhc-------CCCCCHHHHHHHHHHHHHHH
Q 005066 372 --LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARG-------TPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 372 --LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~-------t~G~sgadI~~lv~~A~~~A 441 (715)
++|+|.+ ||+..|.||+++.+++..|+++++++....-+.+ ...+..+ ..--++++++|++..+....
T Consensus 176 ~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 176 FESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 4789998 9999999999999999999999998753221111 2223322 22246899999999887766
Q ss_pred HH
Q 005066 442 AM 443 (715)
Q Consensus 442 ~~ 443 (715)
+.
T Consensus 254 ~~ 255 (284)
T TIGR02880 254 AN 255 (284)
T ss_pred HH
Confidence 54
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.4e-21 Score=208.05 Aligned_cols=205 Identities=26% Similarity=0.372 Sum_probs=161.2
Q ss_pred CCCCCccCCCcHHHHHHHH-HHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELE-EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~-eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
-+.+|+.|+=..+.|++|. ++.+|++..+-|.+.|....+|.|||||||||||+++-|+|+.++..++.++.++....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 4589999999999999885 56677999999999999999999999999999999999999999999999887765432
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--C---chH--HHHHHHHHHHHHhhccccCC--CEEEEeecCC
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--K---DQQ--YMKMTLNQLLVELDGFKQNE--GIIVIAATNF 368 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~--~---~~~--~~~~~l~~LL~~Ld~~~~~~--~ViVIaaTN~ 368 (715)
.. ++.+...... .+||+|.+||.-+.-+.. . ..+ ...-++..||+.+||+-... ..|||.|||+
T Consensus 275 ----~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ----SD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ----HH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 23 6777666543 479999999987542211 1 111 23357889999999986655 6899999999
Q ss_pred CCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCC--CCCHHHHHHH
Q 005066 369 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTP--GFSGADLANL 433 (715)
Q Consensus 369 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~--G~sgadI~~l 433 (715)
++.|||||+||||+|.+|+++..+..+-..+++.++.-.. +..-+..|.+... -.|+||+...
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999999999999999986422 1112333333322 2689998743
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-18 Score=197.97 Aligned_cols=222 Identities=29% Similarity=0.407 Sum_probs=179.9
Q ss_pred HHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCC
Q 005066 238 EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSP 317 (715)
Q Consensus 238 eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P 317 (715)
+++..+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.++.....+..+.+....|..|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 34444433322223344455579999999999999999999999999999999999998888889999999999999999
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHH
Q 005066 318 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 396 (715)
Q Consensus 318 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~-~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR 396 (715)
+|||+-++|.++...+.+..-.....++.++. +|.+. ...+++||++|+..+.|++.+.+ -|-..|.++.|+.++|
T Consensus 492 avifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQR 568 (953)
T ss_pred eEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHH
Confidence 99999999999876665555555666666665 44444 56789999999999999999987 5666899999999999
Q ss_pred HHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH---HcC-----------------CCccCHHHHHH
Q 005066 397 RQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAA---MDG-----------------AKAVTMADLEY 456 (715)
Q Consensus 397 ~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~---~~~-----------------~~~It~edl~~ 456 (715)
.+||+.++.......++.+..++.+|.||+.+|+..++..+-..+. .+. ...++++||.+
T Consensus 569 l~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~k 648 (953)
T KOG0736|consen 569 LEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDK 648 (953)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHH
Confidence 9999999999988899999999999999999999988766522221 111 25789999999
Q ss_pred HHHHHh
Q 005066 457 AKDKIM 462 (715)
Q Consensus 457 A~~~i~ 462 (715)
|++++-
T Consensus 649 als~~~ 654 (953)
T KOG0736|consen 649 ALSRLQ 654 (953)
T ss_pred HHHHHH
Confidence 998653
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-18 Score=182.15 Aligned_cols=230 Identities=23% Similarity=0.342 Sum_probs=172.3
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCC-----CCCeEEEEcCCCCChHHHHHHHHHHhC---------CCeEEe
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK-----LPKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFSC 288 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~-----~pkgvLL~GPPGTGKT~LAralA~el~---------~~fi~i 288 (715)
|+.++=-.++|++|...+-- .-+|.+.+.. ..+-+||+||||||||+|+|++|..+. ..++.+
T Consensus 141 WEsLiyds~lK~~ll~Ya~s---~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAAS---ALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred HHHHhhcccHHHHHHHHHHH---HHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 55666667788887765543 1123333322 235599999999999999999999883 467999
Q ss_pred eccchhhhHhhhhHHHHHHHHHHHHh---CCC--eEEEEcCchhhcCCCCC----CchHHHHHHHHHHHHHhhccccCCC
Q 005066 289 SGSEFEEMFVGVGARRVRDLFSAAKK---RSP--CIIFIDEIDAIGGSRNP----KDQQYMKMTLNQLLVELDGFKQNEG 359 (715)
Q Consensus 289 s~s~~~~~~vg~~~~~vr~lF~~A~~---~~P--~ILfIDEID~l~~~r~~----~~~~~~~~~l~~LL~~Ld~~~~~~~ 359 (715)
++..+.++|.+++.+.+..+|++... ... ..++|||+++++..|.. .......+++|.+|++||.+...++
T Consensus 218 nshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N 297 (423)
T KOG0744|consen 218 NSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN 297 (423)
T ss_pred ehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999998753 222 35668999999876632 2344567899999999999999999
Q ss_pred EEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-------------cccH-----HHHHh-
Q 005066 360 IIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-------------DVDL-----MIIAR- 420 (715)
Q Consensus 360 ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-------------dvdl-----~~la~- 420 (715)
|++++|+|-.+.||.|+.. |-|-+.++.+|+...+.+|++.++....... .+.+ ..+..
T Consensus 298 vliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~ 375 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIEL 375 (423)
T ss_pred EEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHH
Confidence 9999999999999999997 9999999999999999999999987542211 1111 11222
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 421 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 421 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
.+.|+||+-|+.|=-.|. |..-..-.|+.++|-.|+-
T Consensus 376 ~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 376 STVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred hhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHH
Confidence 258999999997754332 3233345788888876643
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=4.8e-18 Score=172.10 Aligned_cols=190 Identities=27% Similarity=0.317 Sum_probs=124.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|+|++|+++++..++-+++..+. ......++|||||||+|||+||+.||++++.+|..+++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 356899999999999999877775332 1233458999999999999999999999999999999865432
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc----------------CCCEEE
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ----------------NEGIIV 362 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~----------------~~~ViV 362 (715)
...+..++.... ...||||||||.+. ......|+..|+.+.- -.++.+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 122333333332 35799999999883 2233445555654421 135899
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-cHHHHHhcCCCCCHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIA 437 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-dl~~la~~t~G~sgadI~~lv~~A 437 (715)
|+||++...|.+.|+. ||.....+..++.++..+|++.........-+- ....||+++.| +++-..++++.+
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999999999999987 999778999999999999999887654332222 25568888886 777777777654
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=7.9e-18 Score=182.38 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=158.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|+|++|+++.++.|..++...+. ....+.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 356899999999999999988765332 1345678999999999999999999999999988877664422
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 362 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViV 362 (715)
...+..++... ..++||||||||.+... ....+.. .|+.+. ...++.+
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------~~e~l~~---~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------VEEILYP---AMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchH--------HHHHHHH---HHHhcceeeeeccCccccceeecCCCceE
Confidence 12233444333 35689999999988421 1222222 222221 1134788
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|++||++..++++|.+ ||...+.+++|+.+++.+|++..+......-+ -.+..|+..+.| +++.+.++++.+...+
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFA 230 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 9999999999999987 99888999999999999999998876533222 225678888876 5688889998888777
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 005066 442 AMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 442 ~~~~~~~It~edl~~A~~~i 461 (715)
..++...|+.+++..+++.+
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 231 QVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 77667789999999998764
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=9e-18 Score=179.50 Aligned_cols=210 Identities=22% Similarity=0.274 Sum_probs=152.6
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVG 301 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~ 301 (715)
+|+|++|++++++.|..++...+. ....+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 699999999999999887764322 1234568999999999999999999999999887776543321
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEEEee
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIVIAA 365 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViVIaa 365 (715)
...+...+... ..+.+|||||+|.+... .... |+..|+.+. ...++++|++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------VEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------HHHH---hhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11222222222 34679999999988521 1112 222222211 1234889999
Q ss_pred cCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 366 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 366 TN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
||++..+++++.+ ||...+.+++|+.+++.+|++..+......- +-.+..|++.+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999887 9988889999999999999998887543221 2235568888777 5578888998887777666
Q ss_pred CCCccCHHHHHHHHHH
Q 005066 445 GAKAVTMADLEYAKDK 460 (715)
Q Consensus 445 ~~~~It~edl~~A~~~ 460 (715)
+...|+.+++..+++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6678999999999877
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9.6e-18 Score=191.33 Aligned_cols=219 Identities=45% Similarity=0.662 Sum_probs=199.0
Q ss_pred hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEE
Q 005066 243 LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFI 322 (715)
Q Consensus 243 L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfI 322 (715)
+..++.|..++..+|++++++||||||||+++++++.+ +..++.+++.....++.|......+.+|..++...|+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788999999999999999999999999999999 77778889999999999999999999999999999999999
Q ss_pred cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHH
Q 005066 323 DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 323 DEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~ 402 (715)
||+|.+.+.+..........++.+++..++++.... +++++.||.+..+|+++.+|+||++.+.++.|+...+.+|+..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 999999988877555567788899999999988444 9999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------CCccCHHHHHHHHHHHhc
Q 005066 403 HMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 403 ~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------~~~It~edl~~A~~~i~~ 463 (715)
+........+.+...++..+.|++++++..++..+...+.++. ...++.+++.++++++..
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9988877778899999999999999999999999998888774 346899999999998765
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=1.1e-17 Score=199.07 Aligned_cols=221 Identities=24% Similarity=0.329 Sum_probs=161.5
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+-++++++|.++..+.+.+++. .....++||+||||||||++|+++|..+ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3468899999988776554432 2234589999999999999999999987 77799999
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch-HHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~-~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
++.+. .+|.|+.+.+++.+|+.++...|+||||||||.|.+.+...+. .... +-|...| .++.+.+|++|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~---~~L~~~l----~~g~i~~IgaT 318 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS---NLLKPAL----SSGKLRCIGST 318 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH---HHHHHHH----hCCCeEEEEec
Confidence 88887 4688999999999999998888999999999999876532221 1122 2233333 24679999999
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-----CcccHHHHHhcCCCCC-----HHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-----DDVDLMIIARGTPGFS-----GADLA 431 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-----~dvdl~~la~~t~G~s-----gadI~ 431 (715)
|..+ .+|++|.| ||. .|.|+.|+.+++.+||+......... .+-.+..++..+..|- +.---
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 9743 47999999 997 79999999999999999877654221 1223444555544443 33445
Q ss_pred HHHHHHHHHHHHc----CCCccCHHHHHHHHHHHh
Q 005066 432 NLVNIAALKAAMD----GAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 432 ~lv~~A~~~A~~~----~~~~It~edl~~A~~~i~ 462 (715)
.++++|+...... ....|+.+|+..++.++.
T Consensus 396 ~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 396 DVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 6777776544332 235699999999999864
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-17 Score=186.52 Aligned_cols=260 Identities=25% Similarity=0.296 Sum_probs=189.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC----CCeEEeeccchhhhHhh
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFEEMFVG 299 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~----~~fi~is~s~~~~~~vg 299 (715)
.|++-...+|++..+ +...| +..+.+|||+||+|||||.|+++++.++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666666666554 22222 33455899999999999999999999984 56778899998877666
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCC-CCCc-hHHHHHHHHHHHHHh-hcc-ccCCCEEEEeecCCCCccccc
Q 005066 300 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR-NPKD-QQYMKMTLNQLLVEL-DGF-KQNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 300 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r-~~~~-~~~~~~~l~~LL~~L-d~~-~~~~~ViVIaaTN~p~~LD~a 375 (715)
...+.++.+|..+.+++|+||++|++|.|.+.. ..+. .......++.+++++ ..| ..+..+.+|++.+....|+|.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 777888999999999999999999999998722 2221 122223333333322 222 334557999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc----CCCccC
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMD----GAKAVT 450 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~----~~~~It 450 (715)
|..|++|+.++.+|.|+..+|.+||++.+++..... .-|++.++..|+||...|+..++.+|...|..+ +.+.+|
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kllt 637 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLT 637 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccch
Confidence 999999999999999999999999999998775321 224555999999999999999999998888732 234789
Q ss_pred HHHHHHHHHHHhcccccccccc-ch--hhhhhhhHHHhhhHHHHhh
Q 005066 451 MADLEYAKDKIMMGSERKSAVI-SD--ESRKLTAFHEGGHALVAVH 493 (715)
Q Consensus 451 ~edl~~A~~~i~~g~~~~~~~~-s~--~~~~~~A~hEaGhAlva~~ 493 (715)
.++|.++++...+..-|.-... +. .--.+-.+||+-.++...+
T Consensus 638 ke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred HHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH
Confidence 9999999998766443321100 01 1123456788888876644
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=1.9e-17 Score=198.10 Aligned_cols=165 Identities=28% Similarity=0.389 Sum_probs=124.4
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh---------
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE--------- 294 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~--------- 294 (715)
+|+.|++++|+.+.+.+..... .+...+.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKL------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHh------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 3589999999999887664211 1111233799999999999999999999999999999876542
Q ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-----cc--------cCCCEE
Q 005066 295 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-----FK--------QNEGII 361 (715)
Q Consensus 295 ~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~-----~~--------~~~~Vi 361 (715)
..|+|.....+.+.|..+....| ||||||||.+....+.. . .+.|+..||. |. ..++++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~----~---~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD----P---ASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC----H---HHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 23666667778888888766655 88999999997543221 1 2334443331 21 125789
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
+|+|||.++.++++|++ ||+ .|+|+.|+.+++.+|++.++.
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred EEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999998 996 789999999999999998873
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=4.6e-17 Score=192.51 Aligned_cols=221 Identities=24% Similarity=0.330 Sum_probs=162.5
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEeec
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 290 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is~ 290 (715)
-+++.++|.++..+.+.+++.. ..+.++||+||||||||++|++++..+ +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3577899999886666655442 234578999999999999999999875 445555555
Q ss_pred cchh--hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 291 SEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 291 s~~~--~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
+.+. ..|.|..+.+++.+|..++...++||||||||.|.+.+.. ..+.....++..++ ..+.+.||++||
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-------~~g~i~vIgATt 323 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-------SSGKIRVIGSTT 323 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-------hCCCeEEEecCC
Confidence 5554 3578888999999999998888999999999999876642 22333333333333 357799999999
Q ss_pred CCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHH-----HHhc-----CCCCCHHHHHH
Q 005066 368 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMI-----IARG-----TPGFSGADLAN 432 (715)
Q Consensus 368 ~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~-----la~~-----t~G~sgadI~~ 432 (715)
.++ .+|++|.| ||+ .|.|+.|+.+++.+||+.+..++....++++.. ++.. +..+-+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 875 47999999 996 799999999999999999887766555555432 2221 33445667888
Q ss_pred HHHHHHHHHHH----cCCCccCHHHHHHHHHHHhc
Q 005066 433 LVNIAALKAAM----DGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 433 lv~~A~~~A~~----~~~~~It~edl~~A~~~i~~ 463 (715)
++++|+..... .....|+.+|+...+.+...
T Consensus 401 lldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 401 VIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 99998865422 23456899999999888654
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=3.1e-16 Score=161.94 Aligned_cols=216 Identities=23% Similarity=0.292 Sum_probs=164.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|+|.+|++++|+.|+-++.--+. ......++||+||||.|||+||..+|+++|+++-..++..+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--
Confidence 467899999999999999987775332 24456699999999999999999999999999999988776432
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 362 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViV 362 (715)
..+-.++... ...+|||||||+++.+. ...++.. .|+.|. .-.++.+
T Consensus 92 ----gDlaaiLt~L--e~~DVLFIDEIHrl~~~--------vEE~LYp---aMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 ----GDLAAILTNL--EEGDVLFIDEIHRLSPA--------VEEVLYP---AMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ----hhHHHHHhcC--CcCCeEEEehhhhcChh--------HHHHhhh---hhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2233333333 23479999999998532 2333333 344331 1246899
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-dl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|++|.+...|...|+. ||.....+..++.++..+|++.........-+- ....||+++.| +++=-.+|+++..-+|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999988886 999999999999999999999988655433222 24568888876 7777778999888899
Q ss_pred HHcCCCccCHHHHHHHHHHHhc
Q 005066 442 AMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 442 ~~~~~~~It~edl~~A~~~i~~ 463 (715)
.-.+...|+.+-..+|+.....
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCc
Confidence 8888899999888888876643
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=3e-16 Score=180.21 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=147.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEE
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFS 287 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~ 287 (715)
..+.+|+|++|+++..+.++..+. ...+.++||+||||||||++|+++...+ +.+|+.
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 356789999999999888874321 2345689999999999999999998753 468999
Q ss_pred eeccch--h-----hhHhhhhHH----------------HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005066 288 CSGSEF--E-----EMFVGVGAR----------------RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 344 (715)
Q Consensus 288 is~s~~--~-----~~~vg~~~~----------------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l 344 (715)
++|+.. . +...+.... .....+. ....++|||||||.+. ...+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHHH
Confidence 998642 1 111111000 0001121 2335799999999883 2234
Q ss_pred HHHHHHhhcc---------c-----------------cCCC-EEEEeecCCCCcccccccCCCCcccccccCCCCHHHHH
Q 005066 345 NQLLVELDGF---------K-----------------QNEG-IIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 397 (715)
Q Consensus 345 ~~LL~~Ld~~---------~-----------------~~~~-ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 397 (715)
+.|+..|+.. . ...+ .+|++|||.|+.|++++++ |+. .|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 4455444321 0 0112 4555667789999999997 875 7889999999999
Q ss_pred HHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005066 398 QIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 460 (715)
Q Consensus 398 ~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 460 (715)
+|++..+++.... ++-.+..|+.++. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999999876432 2223455666653 79999999999999998888889999999999753
No 57
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=2.6e-15 Score=164.39 Aligned_cols=223 Identities=25% Similarity=0.317 Sum_probs=151.5
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC---------CCeEEeec
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFSCSG 290 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~---------~~fi~is~ 290 (715)
+...++++|.++..+.|...+.... ....|.+++|+||||||||++++++++.+. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~--------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPIL--------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3444689999998888877665421 123456899999999999999999998752 57888888
Q ss_pred cchhhh----------Hh--hh--------hHHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 291 SEFEEM----------FV--GV--------GARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 291 s~~~~~----------~v--g~--------~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
....+. .. +. .......++.... ...+.||+|||+|.+.+.. ...+..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhc
Confidence 654321 10 10 0122344555443 3457899999999996221 124555554
Q ss_pred Hhhcc-ccCCCEEEEeecCCCC---cccccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhccCCccc---HH---HH
Q 005066 350 ELDGF-KQNEGIIVIAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LM---II 418 (715)
Q Consensus 350 ~Ld~~-~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd---l~---~l 418 (715)
..+.. ..+.++.+|+++|.++ .+++.+.+ ||. ..|.|++++.++..+|++.+++.......++ +. .+
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 42211 2236789999999886 47777766 674 5789999999999999999986322111122 22 23
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
+..+.| ..+.+.++|+.|...|..++...|+.+|+..|++.+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 444444 455666789999999988888899999999998876
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=172.70 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=141.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC---------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--------------- 283 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~--------------- 283 (715)
.+.+|+||+|++.+++.|+..+. ..+.|.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 46789999999999888877654 2346778999999999999999999999865
Q ss_pred ---------CeEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 284 ---------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 284 ---------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
.++.++++. ..+...+|.+...+.. ....||||||+|.+. ...++.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHH
Confidence 244444431 1123445555555432 234799999999883 3345677777
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgad 429 (715)
++. ..+.+++|++|+.+..+++++.+ |+. .+.|.+|+.++...+++..+..... -.+-.+..|+..+.| +.++
T Consensus 141 LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~ 214 (472)
T PRK14962 141 LEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRD 214 (472)
T ss_pred HHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHH
Confidence 764 34567777777778899999987 774 7899999999999999988865432 222335667776654 4445
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
+.+.+..+... .+ ..|+.+++..++.
T Consensus 215 aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 215 ALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 55555443322 22 3499999998764
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.68 E-value=9.2e-16 Score=165.08 Aligned_cols=202 Identities=28% Similarity=0.380 Sum_probs=137.5
Q ss_pred CCCCccCCCcHHHHHH---HHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~e---L~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
+.+|+|++|++....+ |+.+++ .....+++||||||||||+||+.||+..+.+|..+|+..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc----
Confidence 5689999999987644 333332 222347999999999999999999999999999999754
Q ss_pred HhhhhHHHHHHHHHHHHhCC----CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec--CCCC
Q 005066 297 FVGVGARRVRDLFSAAKKRS----PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT--NFPE 370 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT--N~p~ 370 (715)
.+.+.++.+|+.++... ..|||||||+.+-. .....||-.++ ++.|++|++| |+.-
T Consensus 84 ---~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK-----------~QQD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 84 ---SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK-----------AQQDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ---ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh-----------hhhhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 35577899999985432 48999999998832 11233444433 4667888766 3445
Q ss_pred cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh--ccC------CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 371 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV--LKA------DDVDLMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 371 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--~~~------~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
.|.++|++ |. +++++.+.+.++..++++.-+... ... .+-.+..|+..+.| |.+.++|..-+.+.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~ 218 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAAL 218 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHH
Confidence 79999998 65 478999999999999999854322 111 12224556766665 77766654433332
Q ss_pred Hc-CCCccCHHHHHHHHHHHh
Q 005066 443 MD-GAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 443 ~~-~~~~It~edl~~A~~~i~ 462 (715)
.. ....++.++++..+.+..
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhh
Confidence 22 112445788887776543
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.6e-16 Score=176.25 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=147.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|++.+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4567899999999999999887762 4566789999999999999999999999761
Q ss_pred ----------------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005066 285 ----------------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 344 (715)
Q Consensus 285 ----------------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l 344 (715)
++.++.++ ..+...+|++.+.+. .....|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 22222211 123455666666543 2345799999999883 3457
Q ss_pred HHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCC
Q 005066 345 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTP 423 (715)
Q Consensus 345 ~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~ 423 (715)
|.||..|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+.++.+.....+ ..+..|++...
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889988884 45678889999999999999987 77 58899999999999999888865433222 22566777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 424 GFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 424 G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
| +.++..+++.++... +...|+.+++...
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 5 778888888766542 3345777776654
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1.3e-15 Score=183.00 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=150.9
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+-++++++|+++. ++.++..|.. +...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 183 ~~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 3468999999986 4444443322 123379999999999999999999986 24577777
Q ss_pred ccchhh--hHhhhhHHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFEE--MFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~~--~~vg~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+.+.. .|.|+.+.+++.+|+.++. ..++||||||||.+.+.+......... +-|+..+ ..+.+.+|+||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~---n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA---NLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH---HHhhHHh----hCCCeEEEEec
Confidence 777653 5788999999999999865 468999999999998765433222221 2222222 35779999999
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-----cccHHHHHhcCCCCC-----HHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-----DVDLMIIARGTPGFS-----GADLA 431 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-----dvdl~~la~~t~G~s-----gadI~ 431 (715)
+..+ .+|++|.| ||. .|.|+.|+.+++..||+.+.+...... +..+..++..+.+|- +.---
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 9654 48999999 996 899999999999999877665543222 333555666665553 44555
Q ss_pred HHHHHHHHHHHHc-CCCccCHHHHHHH
Q 005066 432 NLVNIAALKAAMD-GAKAVTMADLEYA 457 (715)
Q Consensus 432 ~lv~~A~~~A~~~-~~~~It~edl~~A 457 (715)
.|+.+|+.....+ ....+..+++...
T Consensus 401 dlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 7888887766543 3344455555443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.8e-15 Score=175.08 Aligned_cols=202 Identities=21% Similarity=0.278 Sum_probs=146.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. ..+++..+||+||+|||||++++++|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 456789999999999998887765 34567788999999999999999999998652
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.++.++ ..+...++++++.+.. ....|+||||+|.|. ....|.||.
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHH
Confidence 22222211 1233456666666532 234799999999883 345688888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ...++++|.+||.++.|.+.+++ |+ .+|.|..++.++..++|+..+++.... .+-.+..|++...| +.+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 45688999999999999999987 77 488999999999999999988765332 23335667888776 567
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
+..+++.++..+ +...|+.+++...
T Consensus 216 dALsLLdQAia~----~~~~It~~~V~~~ 240 (830)
T PRK07003 216 DALSLTDQAIAY----SANEVTETAVSGM 240 (830)
T ss_pred HHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 777777766543 2345776666543
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.66 E-value=2.3e-15 Score=171.36 Aligned_cols=207 Identities=26% Similarity=0.304 Sum_probs=145.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
..+.+|+||+|++++++.|++++..+.+ +.+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4567899999999999999998875432 3447899999999999999999999999999999999876432
Q ss_pred hhhhHHHHHHHHHHHHh------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 298 VGVGARRVRDLFSAAKK------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
..++.+...+.. ..+.||+|||+|.+..+. + ...++.|+..++ ..+..+|+++|.+..
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---d----~~~~~aL~~~l~----~~~~~iIli~n~~~~ 142 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---D----RGGARAILELIK----KAKQPIILTANDPYD 142 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---c----hhHHHHHHHHHH----cCCCCEEEeccCccc
Confidence 122222222211 246799999999986421 1 122344444444 233456667888887
Q ss_pred ccc-cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005066 372 LDK-ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 449 (715)
Q Consensus 372 LD~-aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 449 (715)
+++ .|.+ |+ ..|.|++|+.+++..+++.++...... .+-.+..|+..+. +|++.+++.....+ .+...|
T Consensus 143 ~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a--~~~~~i 213 (482)
T PRK04195 143 PSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA--EGYGKL 213 (482)
T ss_pred cchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh--cCCCCC
Confidence 776 5554 44 579999999999999999988654332 2233666777664 48888888766533 455678
Q ss_pred CHHHHHHHH
Q 005066 450 TMADLEYAK 458 (715)
Q Consensus 450 t~edl~~A~ 458 (715)
+.+++....
T Consensus 214 t~~~v~~~~ 222 (482)
T PRK04195 214 TLEDVKTLG 222 (482)
T ss_pred cHHHHHHhh
Confidence 888887553
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=168.28 Aligned_cols=203 Identities=21% Similarity=0.270 Sum_probs=146.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+...|+..+. ..+.+..+||+||||||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 456789999999999998887665 23456679999999999999999999998763
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
|+.+++.. ..+...+|++.+.+. .....|+||||+|.+. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 22222211 122345565555443 2345799999999883 346788888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ...++++|.+|+.++.|.+.+++ |+. ++.|.+++.++..+.++..+.+.... .+-.+..|++...| +.+
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8874 45788999999999999999987 774 68899999998888888888754332 23346678887776 677
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.-+++.++... ....|+.+++...+
T Consensus 218 dAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 218 DMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 777777765533 22368888887654
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.5e-15 Score=163.20 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=144.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+.+.+.
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 346789999999999998887665 23567789999999999999999999998642
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.++++. ......++.+.+.+.. ....|+||||+|.+. ....+.||.
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk 141 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLK 141 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHH
Confidence 12222111 0223445666655432 234699999999873 234567787
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sga 428 (715)
.++. ....+.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++..++++..+++... -++..+..++..+.| +.+
T Consensus 142 ~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7774 34566777777888888888876 77 47899999999999999998876532 222335567777765 677
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+... +...|+.+++.+++
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 777777765433 45789999888765
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=8.3e-15 Score=163.76 Aligned_cols=201 Identities=28% Similarity=0.386 Sum_probs=141.0
Q ss_pred CCCCCccCCCcHHHHHH---HHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~e---L~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
.+.+|+|++|++++... |..++.. ..+.++||+||||||||++|+++++..+.+|+.+++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 35689999999998666 6655531 1234799999999999999999999999999999886432
Q ss_pred hHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC--CC
Q 005066 296 MFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN--FP 369 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN--~p 369 (715)
...++.+++.+. .....||||||+|.+. ....+.|+..++. ..+++|++|+ ..
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~~ 132 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENPS 132 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCChh
Confidence 234555555553 2356899999999873 1223445555542 4566676653 34
Q ss_pred CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc----CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 370 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK----ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 370 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~----~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
..+++++++ |+ ..+.|++|+.++...+++..+..... ..+-.+..+++.+.| +.+.+.+++..+...
T Consensus 133 ~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~----- 203 (413)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG----- 203 (413)
T ss_pred hhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----
Confidence 578899998 87 57899999999999999988765311 112224567777644 566666666655433
Q ss_pred CCccCHHHHHHHHHHHh
Q 005066 446 AKAVTMADLEYAKDKIM 462 (715)
Q Consensus 446 ~~~It~edl~~A~~~i~ 462 (715)
...|+.+++..++....
T Consensus 204 ~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 VDSITLELLEEALQKRA 220 (413)
T ss_pred cCCCCHHHHHHHHhhhh
Confidence 46799999999887653
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=5e-15 Score=167.27 Aligned_cols=221 Identities=21% Similarity=0.333 Sum_probs=147.6
Q ss_pred CCCCCCccCC-CcHH--HHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 218 ESNTKFSDVK-GVDE--AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 218 ~~~~~f~dv~-G~d~--~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.++.+|++.+ |... +...++++.+ +| .....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~---~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE---NP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh---Cc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4567899954 5332 3333443332 22 1233569999999999999999999988 56789999
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
+.+|...+..........-|... -..+.+|+|||+|.+.++. ... ..|+..++.+...+..+||+++..|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~------~~~---~~l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKE------RTQ---EEFFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCH------HHH---HHHHHHHHHHHHCCCcEEEECCCCH
Confidence 99887765544322222223322 1246799999999885432 111 2233333332233445666666666
Q ss_pred Cc---ccccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 370 ES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 370 ~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
.. +++.|.+ ||.. .+.+.+||.++|.+|++..+...... ++-.++.|+....| +.++|..+++.....+..
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 54 6788876 8864 68999999999999999999764322 22235667877764 789999999888777766
Q ss_pred cCCCccCHHHHHHHHHHHh
Q 005066 444 DGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 444 ~~~~~It~edl~~A~~~i~ 462 (715)
.+ ..||.+.+++++..+.
T Consensus 333 ~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 333 TG-KPITLELAKEALKDLL 350 (450)
T ss_pred hC-CCCCHHHHHHHHHHhh
Confidence 55 5699999999998764
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.9e-15 Score=170.81 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=147.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
+.+.+|+||+|++.+++.|+..+. ..+.+..+||+||||+|||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 356789999999999999987765 3456778999999999999999999999875
Q ss_pred ----------CeEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 284 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 284 ----------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
.++.+++++- .+...+|++...+. .....|+||||+|.+. ....+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 2333333211 12345666665542 2345799999999883 235677888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ...++.+|.+|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+++.... .+..+..|++.+.| +.+
T Consensus 141 tLEE--PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEE--PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhc--CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7774 34667778888888888888875 774 78999999999999999988765432 23336667877765 777
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+... +...|+.+++...+
T Consensus 215 dALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 215 DALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 777777766532 45679988887653
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.64 E-value=9.9e-15 Score=162.67 Aligned_cols=220 Identities=22% Similarity=0.337 Sum_probs=145.5
Q ss_pred CCCCCCcc-CCCcHHH--HHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 218 ESNTKFSD-VKGVDEA--KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 218 ~~~~~f~d-v~G~d~~--k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.++.+|++ ++|.+.. ...++++. .++ .....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~---~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVA---ENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHH---hCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46778999 5565432 22233322 222 2234579999999999999999999987 67899999
Q ss_pred ccchhhhHhhhhHH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 290 GSEFEEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 290 ~s~~~~~~vg~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
+.+|...+...... .+..+....+ .+.+|+|||+|.+.++. .... .|+..++.....+..+||+++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~------~~~~---~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE------RTQE---EFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH------HHHH---HHHHHHHHHHHCCCCEEEecCCC
Confidence 98887665433211 1222222222 35799999999886432 1122 22333332223344566666666
Q ss_pred CCc---ccccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 369 PES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 369 p~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
|.. +++.+.+ ||.. .+.|++||.++|..|++..++..... ++-.+..|+.... -+.++|..+++.....|.
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 654 5677776 8864 68999999999999999999765332 2223566787765 478999999998877776
Q ss_pred HcCCCccCHHHHHHHHHHHh
Q 005066 443 MDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 443 ~~~~~~It~edl~~A~~~i~ 462 (715)
..+ +.||.+.+++++...+
T Consensus 320 ~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 320 LTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HhC-CCCCHHHHHHHHHHhc
Confidence 544 6699999999887654
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.5e-14 Score=160.01 Aligned_cols=224 Identities=22% Similarity=0.227 Sum_probs=151.2
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccchh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFE 294 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~~ 294 (715)
....+.++|.++..++|...+.... ....|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~--------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPAL--------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHh--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 3345779999988888777664311 12345579999999999999999999887 5789999986543
Q ss_pred hh----------Hhh-------hh-HHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005066 295 EM----------FVG-------VG-ARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 295 ~~----------~vg-------~~-~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
+. +.+ .. ...+..+++.... ..+.||+|||+|.+.... ....+..|+..++...
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC
Confidence 21 111 01 1122333333332 456899999999986211 1234666666555443
Q ss_pred cCCCEEEEeecCCCC---cccccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhccC---CcccHHHHHhcCCCC--C
Q 005066 356 QNEGIIVIAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKA---DDVDLMIIARGTPGF--S 426 (715)
Q Consensus 356 ~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~~~---~dvdl~~la~~t~G~--s 426 (715)
..++.+|+++|.++ .+++.+.+ ||. ..|.|++++.++..+|++.+++..... .+-.+..+++.+.+. .
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 23788888888764 46666655 553 468999999999999999998643211 122245566655332 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 427 GADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
.+.+-++|..|+..|..++...|+.+|+..|++.+
T Consensus 248 ~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34555888999989988888999999999999877
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.2e-15 Score=169.60 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=147.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 4567899999999999999887752 4566689999999999999999999999653
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.+++++ ..+...+|++.+.+.. ....|+||||+|.+. ....|.||.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHH
Confidence 33443321 1233456666665432 234699999999883 334678888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+++++|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.... .+..+..|++...| +.+
T Consensus 142 ~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8875 44667788888888888888876 76 477899999999888888888765332 22335667777754 788
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+..+ +...|+.+++...+
T Consensus 216 ~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 216 DALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 888888776533 34678888887653
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=2.8e-14 Score=170.19 Aligned_cols=204 Identities=22% Similarity=0.220 Sum_probs=142.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
..+.+|+||+|++.+++.|+..+. ..+.+..+||+||+|||||++|+.||+.+.+.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 356789999999999998887765 24566679999999999999999999999652
Q ss_pred -------------eEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005066 285 -------------FFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 347 (715)
Q Consensus 285 -------------fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 347 (715)
|+.++.... .+...+|++-+.+ ......|+||||+|.|. ....|.|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaL 140 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNAL 140 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHH
Confidence 222222110 1223444443332 23445799999999983 3457888
Q ss_pred HHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCC
Q 005066 348 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFS 426 (715)
Q Consensus 348 L~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~s 426 (715)
|..|+. ...++++|++|+.++.|.+.|++ |+ .+|.|..++.++..++|+..+++....- +..+..|++...| +
T Consensus 141 LK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888874 44677888888888888888876 66 4789999999999999988886654322 2234556666654 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 427 GADLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
.+++.++++..+. ..+...|+.+++...+
T Consensus 215 lR~Al~eLEKLia---~~~~~~IT~e~V~all 243 (824)
T PRK07764 215 VRDSLSVLDQLLA---GAGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHHh---hcCCCCCCHHHHHHHh
Confidence 7777777776442 2235668888887543
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=8e-15 Score=166.61 Aligned_cols=212 Identities=23% Similarity=0.283 Sum_probs=152.0
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE----------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---------- 287 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~---------- 287 (715)
..+.+|+|++|++.+.+.|+..+. ..+.|.++||+||||||||++|+++|+.+++.-..
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456789999999999988886554 24567799999999999999999999999653110
Q ss_pred -e-eccchhhh----------HhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh
Q 005066 288 -C-SGSEFEEM----------FVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL 351 (715)
Q Consensus 288 -i-s~s~~~~~----------~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~L 351 (715)
+ +|..+.+. -...+...++++++.+.. ....|+||||+|.+. ...++.|+..|
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~naLLk~L 152 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFNALLKTL 152 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHHHHHHHH
Confidence 0 11111110 011234567777777643 234699999999873 34567788777
Q ss_pred hccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCCCCCHHHH
Q 005066 352 DGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADL 430 (715)
Q Consensus 352 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~G~sgadI 430 (715)
+. ....+++|.+|+.++.+++.+.+ |+ ..+.|.+++.++...+++..+++....-+ -.+..|+..+.| +.+++
T Consensus 153 Ee--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~a 226 (507)
T PRK06645 153 EE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDA 226 (507)
T ss_pred hh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 73 45677888888888899998887 66 46889999999999999999976543222 335668887765 88888
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 431 ANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 431 ~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
.++++.+..++..+ ...||.+++...+
T Consensus 227 l~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 227 VSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 88888887665322 2468888887654
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=9e-15 Score=169.58 Aligned_cols=203 Identities=24% Similarity=0.329 Sum_probs=147.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. ..+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 356789999999999998887666 24566678999999999999999999998763
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
|+.+++++ ..+...+|++.+.+. .....|+||||+|.+. ....|.||.
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHH
Confidence 22232221 012344565555443 2345699999999883 456788999
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+++++|.+|+.++.|.+.+++ |+ ..+.|.+++.++....|+..+...... .+..+..|+..+.| +.+
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 55678888888889999988887 76 588999999999999999888654332 22335667777765 677
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+..+++.++... +...|+.+++...+
T Consensus 216 ~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 216 DALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 877888766432 34568888887654
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=8.9e-15 Score=169.20 Aligned_cols=204 Identities=22% Similarity=0.323 Sum_probs=148.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF------------ 285 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f------------ 285 (715)
+.+.+|+||+|++.+++.|+..+. ..+++.++||+||+|+|||++|+++|+.++++-
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 456789999999999999988766 245677899999999999999999999986531
Q ss_pred ------------EEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 286 ------------FSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 286 ------------i~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
+.++.+ ...+...+++++..+.. ....||||||+|.+. ...++.||.
T Consensus 79 Cr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 111111 12234567777765432 334799999999772 235678888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+.+.+|.+||.+..+.+.+++ |+ ..+.|+.++.++...+|+..+++.... .+-.+..|++...| +.+
T Consensus 142 tLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 8874 34667888888888888888875 77 478889999999999999988765432 22236667777754 788
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
++.+++..+..+ +...|+.+++...+.
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 888888776654 345688888776643
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=1.5e-14 Score=162.69 Aligned_cols=223 Identities=16% Similarity=0.254 Sum_probs=144.9
Q ss_pred CCCCCCccCC-CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeecc
Q 005066 218 ESNTKFSDVK-GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGS 291 (715)
Q Consensus 218 ~~~~~f~dv~-G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s 291 (715)
.+..+|++.+ |.... .....+.....++. . ..+++||||||+|||+|++++++++ +..++++++.
T Consensus 99 ~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~-------~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGNS-FAYHAALEVAKNPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCchH-HHHHHHHHHHhCcC-------C-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 5678999977 54332 22222323222321 1 3469999999999999999999986 4678899998
Q ss_pred chhhhHhhhhH-HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 292 EFEEMFVGVGA-RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 292 ~~~~~~vg~~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
+|...+..... ..+. -|.......+.+|+|||++.+.++. ..+ .+|+..++.+......+||++.+.|.
T Consensus 170 ~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~------~~q---~elf~~~n~l~~~~k~iIitsd~~p~ 239 (440)
T PRK14088 170 KFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKT------GVQ---TELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_pred HHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcH------HHH---HHHHHHHHHHHHcCCeEEEECCCCHH
Confidence 88776543221 1222 2333223457899999999885431 111 12222222222334556666666666
Q ss_pred c---ccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 371 S---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 371 ~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
. +++.+.+ ||. ..+.+.+||.+.|..|++..+...... ++--+..|+....| +.++|..+++.....+...
T Consensus 240 ~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~ 316 (440)
T PRK14088 240 KLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_pred HHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh
Confidence 5 4566776 774 456899999999999999998753222 22225667877764 7899999888776666655
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 005066 445 GAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 445 ~~~~It~edl~~A~~~i~~ 463 (715)
+ ..||.+...+++..++.
T Consensus 317 ~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 317 G-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred C-CCCCHHHHHHHHHHHhc
Confidence 5 67999999999887643
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.4e-14 Score=170.67 Aligned_cols=209 Identities=20% Similarity=0.259 Sum_probs=144.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe-------EEe-e
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------FSC-S 289 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f-------i~i-s 289 (715)
+.+.+|+||+|++.+++.|+..+. ..++|..+||+||||||||++|+++|+.+++.- ..+ +
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 356789999999999999887665 235676789999999999999999999997641 111 0
Q ss_pred ccchhhh-------Hh---hhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005066 290 GSEFEEM-------FV---GVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 290 ~s~~~~~-------~v---g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
|-.+.+. +- ..+...+|++...+. .....|+||||+|.| ....++.||..|+.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtLEE-- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTLEE-- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHHhc--
Confidence 1011000 00 012334555555443 233469999999988 24567889988884
Q ss_pred cCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHH
Q 005066 356 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLV 434 (715)
Q Consensus 356 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv 434 (715)
...++++|++|+.+..|.+.+++ |+ .++.|.+++.++..+.|++.+...... .+-.+..|+..+.| +.+++.+++
T Consensus 146 PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLL 221 (944)
T PRK14949 146 PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLT 221 (944)
T ss_pred cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 45677777788888888888887 76 478999999999999999888764222 22235667777765 678888888
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHH
Q 005066 435 NIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 435 ~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
.++... +...++.+++...+
T Consensus 222 dQala~----~~~~It~~~V~~ll 241 (944)
T PRK14949 222 DQAIAF----GGGQVMLTQVQTML 241 (944)
T ss_pred HHHHHh----cCCcccHHHHHHHh
Confidence 776632 33467777666543
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=4.7e-15 Score=178.73 Aligned_cols=166 Identities=23% Similarity=0.372 Sum_probs=127.0
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+-++++|+|.++..+.+.+++. . ....+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh---c---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4578999999986444444332 2 123479999999999999999999988 78899998
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+.+. .+|.|..+.+++.+|..+.. ..++||||||+|.+.+.+...+.......+... -..+.+.+|++|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~-------l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA-------LARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch-------hhcCCCeEEEcC
Confidence 88766 45888899999999998643 568999999999998765433322222222222 245789999999
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
+..+ .+|++|.| ||+ .|.++.|+.+++..||+.....+
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9887 38999999 997 68899999999999998877654
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.7e-14 Score=162.83 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=150.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
+.+.+|+||+|++.+++.|+..+. ..+.|.++||+||||+|||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 356789999999999988886654 3567889999999999999999999997643
Q ss_pred ----------CeEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 284 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 284 ----------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+|.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHH
Confidence 234444432 1234557777666532 234699999999883 345788888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+.+++|.+|+.++.+.+.+++ |+. .+.|.+++.++..+.++..+++.... ++-.+..|++.+.| +.+
T Consensus 139 ~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45677888888888889888887 774 68999999999999999888765432 23346667877764 788
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+..+. ...|+.+++...+
T Consensus 213 ~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 213 NALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 8888888776543 2478999887653
No 80
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.7e-14 Score=164.90 Aligned_cols=203 Identities=24% Similarity=0.309 Sum_probs=148.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.++++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 4567899999999999999887662 3456689999999999999999999988542
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.++++. +.+...++++...+.. ....|+||||+|.+. ...+|.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 23333221 2344567777776542 334799999999883 345788888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ...++++|.+|+.++.+.+.+++ |+. .+.|++|+.++...+++..+++.... .+-.+..++....| +.+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 45677777778888999999886 774 67899999999999999988765432 22335567777765 778
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+..+. ...|+.+|+...+
T Consensus 216 ~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 216 DALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 8888887765542 3568888876653
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=1.6e-14 Score=173.90 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=146.1
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEeec
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 290 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is~ 290 (715)
-+|++|+|.++..+.+.+++. .+.++++||+||||||||++|+.+|..+ +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458899999988777776543 2345589999999999999999999987 478999998
Q ss_pred cchh--hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 291 SEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 291 s~~~--~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+.+...+.......+.. .+ ..+.+.+|++|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp---~l----~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP---AL----ARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH---HH----hCCCcEEEEeCCH
Confidence 8776 4588889999999999998888999999999999876543322222222222 22 3567899999997
Q ss_pred CC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc----c-CCcccHHHHHhcCCCCC-----HHHHHHH
Q 005066 369 PE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL----K-ADDVDLMIIARGTPGFS-----GADLANL 433 (715)
Q Consensus 369 p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~----~-~~dvdl~~la~~t~G~s-----gadI~~l 433 (715)
.+ ..|++|.+ ||. .|.++.|+.++...|++....... . -.+-.+..++..+.+|. |.-.-.+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 65 47899998 997 579999999999999887654321 1 12222445555555543 4444577
Q ss_pred HHHHHHHHHH
Q 005066 434 VNIAALKAAM 443 (715)
Q Consensus 434 v~~A~~~A~~ 443 (715)
+.+|+.....
T Consensus 394 ld~a~a~~~~ 403 (821)
T CHL00095 394 LDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHh
Confidence 7777765544
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.8e-14 Score=165.19 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=146.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. ..+.|..+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 456789999999999998888766 24556788999999999999999999998651
Q ss_pred ----------------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005066 285 ----------------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 344 (715)
Q Consensus 285 ----------------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l 344 (715)
++.++.++ ..+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~ 141 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAF 141 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHH
Confidence 22222211 1233456777666532 223699999999883 3347
Q ss_pred HHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCC
Q 005066 345 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTP 423 (715)
Q Consensus 345 ~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~ 423 (715)
|.||..|+. ....+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.|+..+.+....- +-.+..|++.+.
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888774 45677778788888888888876 76 4789999999999999998887654332 223566787776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 424 GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 424 G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
| +.+++.+++.++... +...|+.+++...+
T Consensus 217 G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 217 G-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 5 777777777665544 34578888887654
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=2.3e-14 Score=154.04 Aligned_cols=203 Identities=21% Similarity=0.296 Sum_probs=133.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
..+.+|+|++|++++++.++.++. .+..|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~-- 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR-- 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--
Confidence 567899999999999998888765 2445667788999999999999999999999999999887 21
Q ss_pred hhhhHHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 298 VGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
+......+........ ...+.||||||+|.+.. ......+..+ ++. ...++.+|.+||.++.+++++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~---le~--~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSF---MEA--YSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHH---HHh--cCCCceEEEEcCChhhchHHH
Confidence 1111112222111111 13568999999998731 1122233333 443 235678888999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhc---cCC--ccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL---KAD--DVD---LMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 448 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~---~~~--dvd---l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 448 (715)
.+ ||. .+.++.|+.+++.++++.++.... ... .++ +..++....| |++.+++.....+. ...
T Consensus 149 ~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~~~~---~~~ 218 (316)
T PHA02544 149 RS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQRYAS---TGK 218 (316)
T ss_pred Hh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHc---cCC
Confidence 87 885 789999999999988876654321 111 222 3445554433 55666554443332 245
Q ss_pred cCHHHHHH
Q 005066 449 VTMADLEY 456 (715)
Q Consensus 449 It~edl~~ 456 (715)
++.+++..
T Consensus 219 i~~~~l~~ 226 (316)
T PHA02544 219 IDAGILSE 226 (316)
T ss_pred CCHHHHHH
Confidence 66666543
No 84
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.6e-14 Score=174.64 Aligned_cols=203 Identities=22% Similarity=0.327 Sum_probs=146.1
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+-+++.++|.++..+.+.+++. . +...+++|+||||||||++++++|..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3468899999986444444332 1 223478999999999999999999986 67888888
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+.+. ..|.|..+.+++.+|..+.. ..|+||||||||.|.+.+...+.. ...+-|... -..+.+.+|++|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~~~Lk~~----l~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM---DAGNMLKPA----LARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh---HHHHHhchh----hhcCceEEEEeC
Confidence 77765 45888889999999999865 458999999999998654332221 122222222 245679999999
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-----cHHHHHhcCCCCC-----HHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-----DLMIIARGTPGFS-----GADLA 431 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-----dl~~la~~t~G~s-----gadI~ 431 (715)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++.....+ .+...+..+.+|- |.---
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 9774 47999999 996 68999999999999999887766444333 2444455544443 44555
Q ss_pred HHHHHHHHHHHHc
Q 005066 432 NLVNIAALKAAMD 444 (715)
Q Consensus 432 ~lv~~A~~~A~~~ 444 (715)
.|+++|+..+...
T Consensus 387 dlld~a~a~~~~~ 399 (852)
T TIGR03346 387 DLIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHHhh
Confidence 7888888766543
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=4.4e-14 Score=152.58 Aligned_cols=208 Identities=22% Similarity=0.226 Sum_probs=133.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-----CCeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-----~~fi~is~s~ 292 (715)
..+.+|++++|.+++++.|..++.. .. +.++||+||||||||++|+++++++. .+++.+++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~-----------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS-----------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC-----------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3467899999999999988876641 11 22699999999999999999999883 4578888877
Q ss_pred hhhhH-------------hhh-------hHHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005066 293 FEEMF-------------VGV-------GARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 347 (715)
Q Consensus 293 ~~~~~-------------vg~-------~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 347 (715)
+.... .+. ....++.+...... ..+.+|||||+|.+.. .. .+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~---~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DA---QQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HH---HHHH
Confidence 64221 011 11223333322222 2346999999998731 12 2334
Q ss_pred HHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCC
Q 005066 348 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFS 426 (715)
Q Consensus 348 L~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~s 426 (715)
...++... ....+|.+++.+..+.+.|.+ |+ ..+.+++|+.++...+++..+++.... .+..+..|+..+.
T Consensus 146 ~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~--- 217 (337)
T PRK12402 146 RRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG--- 217 (337)
T ss_pred HHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---
Confidence 44444332 233455556566667777776 65 478999999999999999988765332 2334566777664
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 427 GADLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
+|++.+++.....+. +...||.+|+.+++.
T Consensus 218 -gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 -GDLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred -CCHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 356666655544432 234799999887643
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.8e-14 Score=162.66 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=142.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
..+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3567899999999999999887762 3456678999999999999999999988531
Q ss_pred ----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 285 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 285 ----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
++.+++++ ..+...++++...+.. ..+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 33333321 1123445665444432 346799999999762 3457778888
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgad 429 (715)
++. ....+++|.+||.++.+.+.+.+ |+. .+.|++|+.++....++.++++.... .+-.+..|+..+.| +.++
T Consensus 140 LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 774 34567777788888899998887 764 78999999999999999998765432 22235567777654 5555
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.++++.+.. . ...|+.+++...+
T Consensus 214 aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 214 AESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 5566655432 1 3478998887764
No 87
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=5.6e-14 Score=163.26 Aligned_cols=216 Identities=19% Similarity=0.214 Sum_probs=143.6
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHHh----------CCCeEEeeccc
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSE 292 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkg-vLL~GPPGTGKT~LAralA~el----------~~~fi~is~s~ 292 (715)
+.|+|.++..++|..++..... + ..|.+ ++|+|+||||||++++.+..++ .+.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6789999888888877764211 1 22434 5699999999999999998776 25678999965
Q ss_pred hhhhH---h-------------h-hhHHHHHHHHHHHH--hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 005066 293 FEEMF---V-------------G-VGARRVRDLFSAAK--KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG 353 (715)
Q Consensus 293 ~~~~~---v-------------g-~~~~~vr~lF~~A~--~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~ 353 (715)
+...+ . | .....+..+|.... ....+||+|||||.|..+ .+.+|..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh-
Confidence 43321 0 1 11234556666542 234579999999999643 1345666666543
Q ss_pred cccCCCEEEEeecCC---CCcccccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhc-cCCcccHHHHHhcCCCCCHH
Q 005066 354 FKQNEGIIVIAATNF---PESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVL-KADDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 354 ~~~~~~ViVIaaTN~---p~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~~-~~~dvdl~~la~~t~G~sga 428 (715)
.....++||+++|. ++.|++.+.+ ||.. .|.|++++.+++.+||+..+.... .-.+-.+..+|+... ...+
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SG 973 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSG 973 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCC
Confidence 23467999999985 4567788876 6653 488999999999999999987531 111222445555333 2234
Q ss_pred HHH---HHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 429 DLA---NLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 429 dI~---~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
|++ ++|+.|+.. ++...|+.+|+.+|..++..
T Consensus 974 DARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 974 DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 666 555555543 34568999999999987643
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=3.9e-14 Score=144.52 Aligned_cols=205 Identities=18% Similarity=0.228 Sum_probs=133.4
Q ss_pred CCCCCccCC--CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccch
Q 005066 219 SNTKFSDVK--GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~--G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~ 293 (715)
.+.+|++++ +.+.+.+.+++++. ...+.+++|+||||||||++|++++..+ +.++++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456788886 34556666665433 2345689999999999999999999877 578999999887
Q ss_pred hhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 294 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
.... ..++.... .+.+|+|||+|.+... ......+..++..+. ..+..+|+.++..+..++
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~------~~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ------PEWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCC------hHHHHHHHHHHHHHH---HcCCeEEEECCCChHHCC
Confidence 6432 23333222 2459999999988432 111223333433322 223344444444444332
Q ss_pred ---ccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 374 ---KALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 374 ---~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
+.|.+ || ...|.+|+|+.+++..+++.++.+.... .+--+..|+.. .+-+.+++.++++.+...+...+ .
T Consensus 139 ~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~ 214 (226)
T TIGR03420 139 LRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-R 214 (226)
T ss_pred cccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-C
Confidence 56665 55 4678999999999999999887644322 22225567775 55689999999998876655544 5
Q ss_pred ccCHHHHHHHH
Q 005066 448 AVTMADLEYAK 458 (715)
Q Consensus 448 ~It~edl~~A~ 458 (715)
.|+.+.+.+.+
T Consensus 215 ~i~~~~~~~~~ 225 (226)
T TIGR03420 215 KITIPFVKEVL 225 (226)
T ss_pred CCCHHHHHHHh
Confidence 78888777654
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=4.1e-14 Score=152.92 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=133.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-----CCeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-----~~fi~is~s~ 292 (715)
..+.+|+||+|++++.+.|+.++.. ...| ++||+||||||||++|+++|+++. ..++.++.++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 3567899999999999888876542 2233 699999999999999999999983 2466667665
Q ss_pred hhhhHhhhhHHHHHHHHHHH-H------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 293 FEEMFVGVGARRVRDLFSAA-K------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A-~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
... ...+++..... . ...+.|++|||+|.+.. ...+.|+..++.+. ....+|.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~~--~~t~~il~ 135 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIYS--NTTRFALA 135 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhccc--CCceEEEE
Confidence 322 12233332221 1 12357999999998831 22345555555432 34456678
Q ss_pred cCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 366 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 366 TN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
||.++.+.++|.+ |+ ..+.|++|+.++...+++..+++.... .+..+..++....| |++.+++.-...+ .
T Consensus 136 ~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~--~ 206 (319)
T PLN03025 136 CNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQATH--S 206 (319)
T ss_pred eCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHH--h
Confidence 8888888888887 76 478999999999999999888764332 23335666666544 6666655443222 2
Q ss_pred CCCccCHHHHHHH
Q 005066 445 GAKAVTMADLEYA 457 (715)
Q Consensus 445 ~~~~It~edl~~A 457 (715)
+...|+.+++...
T Consensus 207 ~~~~i~~~~v~~~ 219 (319)
T PLN03025 207 GFGFVNQENVFKV 219 (319)
T ss_pred cCCCCCHHHHHHH
Confidence 3456888877643
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.8e-14 Score=163.26 Aligned_cols=203 Identities=21% Similarity=0.276 Sum_probs=141.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 3567899999999999999887652 3456689999999999999999999999653
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.++++. ..+...++.+.+.+ ......||||||+|.+. ...++.|+.
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHH
Confidence 33333221 01123334333222 12345799999999883 334678888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ....+++|++||.++.+.+.+++ |+. +|.|++++.++...+|+..+.+.... .+-.+..|+..+.| +.+
T Consensus 142 ~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR 215 (624)
T PRK14959 142 TLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVR 215 (624)
T ss_pred Hhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8774 34578888888888888888876 774 78999999999999998887654332 22235567776654 455
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+. ..+...|+.+++..++
T Consensus 216 ~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 216 DSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 5555555432 2355689999998776
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.9e-14 Score=163.57 Aligned_cols=203 Identities=20% Similarity=0.264 Sum_probs=146.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3467899999999999988877652 4456678999999999999999999998652
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.++++. ..+...+|++...+.. ....|+||||+|.+. ....|.||.
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK 141 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLK 141 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHH
Confidence 11121110 1234556777766532 234699999999883 345688888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....++..+++.... .+..+..|+..+. -+.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 8875 45677788888888888877776 76 588999999999999888888654332 2223556777765 4677
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+..+ +...|+.+++...+
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888776544 45678888887654
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.58 E-value=5.5e-14 Score=153.21 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=143.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 284 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------------- 284 (715)
.+.+|+|++|++++++.|.+.+. .+..|..+||+||||+|||++|+++++.+..+
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46789999999999999887665 24566789999999999999999999987532
Q ss_pred ----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 285 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 285 ----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
++.+++.. ..+...++.++..+.. ....||+|||+|.+. ....+.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~~ 140 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLKT 140 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHHH
Confidence 22232221 1123456777776543 233699999999873 2346777777
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgad 429 (715)
++. ....+++|.+||.++.+.+.+.+ |+. .+++++|+.++..++++.++++.... ++-.+..++..+.| +.+.
T Consensus 141 le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~ 214 (355)
T TIGR02397 141 LEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRD 214 (355)
T ss_pred HhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHH
Confidence 764 34567777788888888888887 774 78999999999999999998765432 22234556766654 6666
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
+.+.++.+.... ...|+.+|+++++.
T Consensus 215 a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 215 ALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 666666655442 24599999987653
No 93
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.6e-14 Score=159.69 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=142.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
+.+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+.+|+.+.+
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3467899999999999888876652 345667999999999999999999998864
Q ss_pred ----------CeEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 284 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 284 ----------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
.++.+++.. ..+...++.+.+.+. .....|+||||+|.+. ....+.||.
T Consensus 79 C~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHH
Confidence 122222211 112234555555443 2345799999999873 345678888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+.+++|.+|+.+..+.+.+++ |. ..++|.+++.++....++..+++.... .+-.+..|+..+. -+.+
T Consensus 142 ~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR 215 (546)
T PRK14957 142 TLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLR 215 (546)
T ss_pred HHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 8874 44667777777778888877776 77 588999999999998888888764332 2233556777664 4667
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
++.+++..+.... + ..|+.++++.++.
T Consensus 216 ~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 216 DALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 7777777665432 2 5688888887543
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.8e-14 Score=160.85 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=143.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. .++.|..+||+||+|||||++|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 356789999999999999887765 24567678999999999999999999988642
Q ss_pred -------------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005066 285 -------------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 347 (715)
Q Consensus 285 -------------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 347 (715)
++.++++.. .+...++++.+.+. .....|++|||+|.+. ....|.|
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NAL 138 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNAL 138 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHH
Confidence 222222111 12344555544432 2334699999999883 3367888
Q ss_pred HHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCC
Q 005066 348 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFS 426 (715)
Q Consensus 348 L~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~s 426 (715)
|..|+. ...++++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++.++++....- +..+..|+.... -+
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gd 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GS 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 888884 45678888888888999999887 65 4789999999999999988887654322 223445666554 46
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 427 GADLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
.+++.++++..... .+...|+.+++...
T Consensus 213 lR~aln~Ldql~~~---~~~~~It~~~v~~l 240 (584)
T PRK14952 213 PRDTLSVLDQLLAG---AADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHHhc---cCCCCcCHHHHHHH
Confidence 77777888765443 23456888777655
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=2.1e-13 Score=140.77 Aligned_cols=210 Identities=10% Similarity=0.126 Sum_probs=129.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
.+..+|++++|.++.. .+..+... +. ......++||||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~------~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKN------FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHH------hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4577999999766432 12212111 11 1112358999999999999999999986 3455555543221
Q ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC-EEEEeecCCCCccc
Q 005066 295 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG-IIVIAATNFPESLD 373 (715)
Q Consensus 295 ~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~-ViVIaaTN~p~~LD 373 (715)
.. ...+++.. ....+|+|||++.+.+.. .....+..+++.+ ...++ ++|++++..|..++
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~------~~~~~l~~l~n~~---~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGNE------EWELAIFDLFNRI---KEQGKTLLLISADCSPHALS 140 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCCh------HHHHHHHHHHHHH---HHcCCcEEEEeCCCChHHcc
Confidence 11 11223232 245799999999885432 2223344444433 23343 44556666676654
Q ss_pred ---ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005066 374 ---KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 449 (715)
Q Consensus 374 ---~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 449 (715)
+.|.+..++...+.+++||.++|.+|++.++...... ++--+..|++...| +.+.+.++++.....+. ...+.|
T Consensus 141 ~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~~~~i 218 (229)
T PRK06893 141 IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL-QAQRKL 218 (229)
T ss_pred ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH-hcCCCC
Confidence 7888745556788999999999999999888654332 22235567777764 67888888876543333 333579
Q ss_pred CHHHHHHHH
Q 005066 450 TMADLEYAK 458 (715)
Q Consensus 450 t~edl~~A~ 458 (715)
|...+++++
T Consensus 219 t~~~v~~~L 227 (229)
T PRK06893 219 TIPFVKEIL 227 (229)
T ss_pred CHHHHHHHh
Confidence 988888765
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=160.62 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=146.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
+.+.+|+||+|++.+++.|+..+. .++.|..+||+||+|+|||++|+++|+.+++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 456789999999999999987765 24567789999999999999999999998642
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.+++.+ ..+...++++...+.. ....|++|||+|.+. ....|.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHH
Confidence 22332221 1233456776666532 223699999999883 345688888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+++++|.+||.++.|.+.+++ |+. .+.|..++.++....+...+++.... .+-.+..|++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45678888888889999999887 764 78999999999988888888765332 23335567777765 667
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
++.+++..+..+. + ..|+.+|+...
T Consensus 216 ~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 216 DSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7777776655443 2 35888888754
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.55 E-value=1.7e-13 Score=140.67 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=130.1
Q ss_pred CCCCCCccCC--CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 218 ESNTKFSDVK--GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~--G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
..+.+|++++ +...+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3467899977 33455555555433 22345689999999999999999999876 77889998877
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC-CC-
Q 005066 293 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF-PE- 370 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~-p~- 370 (715)
+.... . ......+|+|||+|.+.. .....+..++. ........++|.+++. |.
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~--------~~~~~L~~~~~---~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDD--------AQQIALFNLFN---RVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCc--------hHHHHHHHHHH---HHHHcCCcEEEEeCCCCHHh
Confidence 64321 1 122456999999998732 12223333333 3333444434444443 32
Q ss_pred -cccccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005066 371 -SLDKALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 446 (715)
Q Consensus 371 -~LD~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 446 (715)
.+.+.|.+ || ...+.+++|+.+++..+++.+.......- +--+..|+...+ -+.+++.++++.-...|... .
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~~-~ 211 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLEQ-K 211 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh-C
Confidence 24455664 66 46889999999999999988765433222 223556777544 58899999998755545444 4
Q ss_pred CccCHHHHHHHHH
Q 005066 447 KAVTMADLEYAKD 459 (715)
Q Consensus 447 ~~It~edl~~A~~ 459 (715)
+.||...+++++.
T Consensus 212 ~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 RPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHh
Confidence 7899998888764
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.55 E-value=1.6e-13 Score=162.02 Aligned_cols=208 Identities=24% Similarity=0.265 Sum_probs=135.5
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|+|++|++.+......+...+.. .. ..++||+||||||||++|+++++..+.+|+.+++....
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---- 89 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA--------DR-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---- 89 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc--------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh----
Confidence 457899999999987543333222221 12 23799999999999999999999999999998875321
Q ss_pred hhhHHHHHHHHHHHH-----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC--CCCc
Q 005066 299 GVGARRVRDLFSAAK-----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN--FPES 371 (715)
Q Consensus 299 g~~~~~vr~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN--~p~~ 371 (715)
...++..+..+. .....+|||||+|.+.. ...+.|+..++ ...+++|++|+ ....
T Consensus 90 ---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE----~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 90 ---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE----NGTITLIGATTENPYFE 151 (725)
T ss_pred ---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc----CceEEEEEecCCChHhh
Confidence 122333333331 13457999999998731 12334554443 24567776654 3346
Q ss_pred ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc-------c-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 372 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL-------K-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 372 LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~-------~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
+++++++ |. ..+.|++++.+++..|++..+.... . -.+-.+..|+....| +.+++.++++.+...+..
T Consensus 152 l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~ 227 (725)
T PRK13341 152 VNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPP 227 (725)
T ss_pred hhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccc
Confidence 8889987 64 4689999999999999999887321 1 112225567777654 567777777766543322
Q ss_pred cC--CCccCHHHHHHHHHHH
Q 005066 444 DG--AKAVTMADLEYAKDKI 461 (715)
Q Consensus 444 ~~--~~~It~edl~~A~~~i 461 (715)
.+ ...|+.+++++++.+.
T Consensus 228 ~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 228 DEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred CCCCceeccHHHHHHHHHHh
Confidence 22 2248888888887663
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.3e-13 Score=156.23 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=144.7
Q ss_pred CCCCCCccCC-CcHH--HHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 218 ESNTKFSDVK-GVDE--AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 218 ~~~~~f~dv~-G~d~--~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.+..+|++++ |..+ +...+..+++ ++ ....+.++|||++|+|||+|++++++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~-------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---AP-------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Cc-------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4678899976 4332 2223333332 21 1122359999999999999999999987 56889999
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC-
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF- 368 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~- 368 (715)
+.+|.+.+...........|..- -..+++|+||||+.+.++. .....+..+++.+ ...++.+|| ++|.
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke------~tqeeLF~l~N~l---~e~gk~III-TSd~~ 420 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE------STQEEFFHTFNTL---HNANKQIVL-SSDRP 420 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH------HHHHHHHHHHHHH---HhcCCCEEE-ecCCC
Confidence 99988776554333223334432 2346899999999886432 1122223333322 233344444 5554
Q ss_pred CC---cccccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 369 PE---SLDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 369 p~---~LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
|. .+++.|.+ ||.. .+.|..||.+.|.+||+.++....+.-+-+ +..|+.... -+.++|..+++.....+.
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFAS 497 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 33 46788887 8865 458899999999999999987654332222 455777665 378999988887766666
Q ss_pred HcCCCccCHHHHHHHHHHHhc
Q 005066 443 MDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 443 ~~~~~~It~edl~~A~~~i~~ 463 (715)
..+ +.|+.+.++.++..++.
T Consensus 498 ~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 498 LNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred hhC-CCCCHHHHHHHHHHhhc
Confidence 544 67999999998877654
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=157.77 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=142.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
..+.+|+||+|++.+++.|...+. ..+.|.++||+||||+|||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 356789999999999988887654 3456778999999999999999999998853
Q ss_pred ----------CeEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 284 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 284 ----------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
.++.++++. ..+...+|.+...+.. ....|++|||+|.+. ....+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 122222211 1233456666665533 223699999999873 224577888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sga 428 (715)
.|+. +...+++|.+|+.++.|.+.+++ |+. .+.|++|+.++....++..+.+... -++-.+..++..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 7774 45577888888889999999887 775 7899999999999999988865432 122235566777654 666
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
++.++++..... .+ ..|+.+++...
T Consensus 216 ~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 216 DGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 666776654333 23 23888888765
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=6.5e-14 Score=155.11 Aligned_cols=184 Identities=22% Similarity=0.327 Sum_probs=127.9
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe----------------
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF---------------- 285 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f---------------- 285 (715)
.|++|+|++.+++.|++.+..-++ .+...+.+.|.++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999885332 23445667888999999999999999999999875431
Q ss_pred -------EEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005066 286 -------FSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 286 -------i~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~ 354 (715)
..+.... ...+...+|++++.+.. ....|+||||+|.+. ....|.||..|+.
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe- 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE- 143 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc-
Confidence 1111110 11233557888887753 234699999999983 2345778888875
Q ss_pred ccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHH
Q 005066 355 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLAN 432 (715)
Q Consensus 355 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~ 432 (715)
+..++++|.+|+.++.|.|.+++ |+ ..+.|++|+.++..++|.... .. .......++..+.|..+..+.-
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 33445555555558999999997 77 489999999999887776322 11 1223456777887766655443
No 102
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.9e-13 Score=152.28 Aligned_cols=226 Identities=19% Similarity=0.264 Sum_probs=142.4
Q ss_pred CCCCCCccCC-CcHHH--HHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 218 ESNTKFSDVK-GVDEA--KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 218 ~~~~~f~dv~-G~d~~--k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
.++.+|++.+ |.... ...++++.. ++. ...+...++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---ccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4677899976 54433 233333322 111 0112233579999999999999999999976 6889999988
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC-
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 370 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~- 370 (715)
+|...+.......-...|.... ..+++|+|||++.+.++. ..++....++|.+. ..+..+|+++++.|.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~-------~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLH-------TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHH-------HCCCcEEEecCCCHHH
Confidence 8776544332211122344332 356799999999885432 12233333344333 223445555555554
Q ss_pred --cccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHHHHH---HHH
Q 005066 371 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAAL---KAA 442 (715)
Q Consensus 371 --~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~A~~---~A~ 442 (715)
.+++.|.+ ||. ..+.+++|+.++|..||+..+......-+-+ +..|+.... -+.++|.+.++..+. .+.
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS-SNVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH
Confidence 46788887 886 5778899999999999999987653322222 344666655 367788877776643 222
Q ss_pred HcCCCccCHHHHHHHHHHHhc
Q 005066 443 MDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 443 ~~~~~~It~edl~~A~~~i~~ 463 (715)
.. ...|+.+++++++..++.
T Consensus 326 ~~-~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 326 LS-HQLLYVDDIKALLHDVLE 345 (445)
T ss_pred hh-CCCCCHHHHHHHHHHhhh
Confidence 22 357999999999987653
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.2e-13 Score=149.85 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=139.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch----
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF---- 293 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~---- 293 (715)
..+.+|+||+|++.+++.+...+. .+..|.++|||||||+|||++|+++++.+..+.....+..+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 356789999999999888887665 24567799999999999999999999988653211111100
Q ss_pred --hhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 294 --EEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 294 --~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.+.....+...++.+++.+.. ..+.||||||+|.+. ...++.|+..++. .....++|.+|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~~~~Il~~~ 146 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAHAIFILATT 146 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCceEEEEEeC
Confidence 000011223566777776542 235799999999773 2235667766664 334556666777
Q ss_pred CCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005066 368 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 446 (715)
Q Consensus 368 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 446 (715)
.+..+.+++.+ |+. .+.+++|+.++...++...+.+.... ++-.+..++..+.| +.+.+.+.++....++ +.
T Consensus 147 ~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~ 219 (367)
T PRK14970 147 EKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GK 219 (367)
T ss_pred CcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CC
Confidence 78888888876 663 68999999999999998888765432 23345567766543 5555556665544433 33
Q ss_pred CccCHHHHHHHHH
Q 005066 447 KAVTMADLEYAKD 459 (715)
Q Consensus 447 ~~It~edl~~A~~ 459 (715)
. |+.++++..+.
T Consensus 220 ~-it~~~v~~~~~ 231 (367)
T PRK14970 220 N-ITRQAVTENLN 231 (367)
T ss_pred C-CCHHHHHHHhC
Confidence 3 88888776643
No 104
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.8e-14 Score=157.53 Aligned_cols=167 Identities=27% Similarity=0.440 Sum_probs=129.4
Q ss_pred ccCCCcHHHHHHHHHHHHH--hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh------
Q 005066 224 SDVKGVDEAKQELEEIVHY--LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE------ 295 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~--L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~------ 295 (715)
+|=.|++++|+.+.|++.- |+. ....+-+.|+||||+|||+++++||+.+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 5678999999999988764 332 223456889999999999999999999999999998765433
Q ss_pred ---hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH------Hhhcc----ccCCCEEE
Q 005066 296 ---MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV------ELDGF----KQNEGIIV 362 (715)
Q Consensus 296 ---~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~------~Ld~~----~~~~~ViV 362 (715)
-|+|....++-+..+...-..| +++|||||.++. ...++. ...+.+||. .+|.| -.-+.|++
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDP---asALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDP---ASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCCh---HHHHHHhcChhhccchhhhccccccchhheEE
Confidence 2889999999999999887777 788999999983 222222 222333331 12222 12357999
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 406 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 406 (715)
|||.|..+.|+++|+- |+. .|+++-+..++..+|.+.||-.
T Consensus 558 icTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred EEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999996 886 8999999999999999999843
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.3e-13 Score=158.88 Aligned_cols=209 Identities=23% Similarity=0.301 Sum_probs=146.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE---eeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---CSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~---is~s~~~ 294 (715)
..+.+|+||+|++.+++.|+..+. ..+.+..+||+||+|+|||++|+++|..+.++-.. -.|....
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 356789999999999999888776 24567789999999999999999999988653110 0111110
Q ss_pred h-------hH-----hhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 005066 295 E-------MF-----VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE 358 (715)
Q Consensus 295 ~-------~~-----vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~ 358 (715)
. .+ ...+...+|.+.+.+.. ....|++|||+|.+. ....+.||..|+. +..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEE--PP~ 147 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEE--PPK 147 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhc--CCC
Confidence 0 00 01234557777776643 344799999999883 2357888888884 456
Q ss_pred CEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHH
Q 005066 359 GIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIA 437 (715)
Q Consensus 359 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A 437 (715)
.+++|.+|+.++.|.+.+++ |+. .+.|.+|+.++...+|+..+.+..... +..+..++..+.| +.+++.+++..+
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77888888889999999887 775 789999999999999988876653322 2225567777654 567777777665
Q ss_pred HHHHHHcCCCccCHHHHHHHH
Q 005066 438 ALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 438 ~~~A~~~~~~~It~edl~~A~ 458 (715)
..+. ...|+.+++...+
T Consensus 224 ~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 224 SIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHhc----cCCCCHHHHHHHH
Confidence 4432 2348888887653
No 106
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.54 E-value=3.5e-13 Score=157.39 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=172.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++++|++.+.+.+...+. ...|.+++|+||||||||++|+++.+.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 5689999999998776654331 1235579999999999999999998765 46899999
Q ss_pred ccchhh-------hHhhhhHH----HHHHHHHH----------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHH
Q 005066 290 GSEFEE-------MFVGVGAR----RVRDLFSA----------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLL 348 (715)
Q Consensus 290 ~s~~~~-------~~vg~~~~----~vr~lF~~----------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL 348 (715)
|..+.. .+.+.... ..+..+.. .......+|||||++.+. ...+..+..++
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~~~Q~~Ll~~L 289 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------PLLQNKLLKVL 289 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------HHHHHHHHHHH
Confidence 876521 11111100 01111110 012235699999999773 11222222222
Q ss_pred HHhh------cc---------------c--cCCCEEEEe-ecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 349 VELD------GF---------------K--QNEGIIVIA-ATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 349 ~~Ld------~~---------------~--~~~~ViVIa-aTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
..-. .+ . ....+++|+ +|+.++.++++|++ ||. .+.+++++.+++..|++.++
T Consensus 290 e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 290 EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHH
Confidence 2100 00 0 112355555 55678889999887 887 67899999999999999998
Q ss_pred hhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHHHhccccccccccchh
Q 005066 405 SKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD--------GAKAVTMADLEYAKDKIMMGSERKSAVISDE 475 (715)
Q Consensus 405 ~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~--------~~~~It~edl~~A~~~i~~g~~~~~~~~s~~ 475 (715)
.+.... .+--+..|+..+. .++...+++..+...+..+ +...|+.+|+++++..-... +.+
T Consensus 367 ~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~~--------~~~ 436 (615)
T TIGR02903 367 EKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISRLS--------PYE 436 (615)
T ss_pred HHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCcCc--------cch
Confidence 764321 1222445666553 4555556665554443211 23378999999887532110 111
Q ss_pred hhhhhhHHHhhhHHHHhhhCCCCcceeEEEe--eCC-CccceEEecCCCccccccHHHHHHHHHHHhcHHHHHHHHcCCC
Q 005066 476 SRKLTAFHEGGHALVAVHTDGALPVHKATIV--PRG-MSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGEN 552 (715)
Q Consensus 476 ~~~~~A~hEaGhAlva~~~~~~~~v~kvti~--prg-~~lG~~~~~p~~~~~~~tr~~l~~~i~v~LgGraAEel~fG~~ 552 (715)
..+..--.+.||+....+......+..|.+. ++| .+.|.+. +|+ .....+|+.+.+-+.++ +..-.+-|...
T Consensus 437 ~~~~~~~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~vg-l~~-~~~~e~kerv~~A~~~l---~~~~g~~~~~~ 511 (615)
T TIGR02903 437 KRKASPTYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTVR-FND-TAGSMAKDSVFNAASVI---RKITGKDLSNY 511 (615)
T ss_pred hhhccCCCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceEe-eCC-cchHHHHHHHHHHHHHH---HHhCCCCCCCe
Confidence 1112222344555533333322333333332 333 2334432 333 22344566655555433 11112223322
Q ss_pred Cc---------cCCchHHHHHHHHHHHHH
Q 005066 553 EV---------TSGASSDLQQATKLARAM 572 (715)
Q Consensus 553 ~v---------tsGas~DL~~AT~lA~~m 572 (715)
.+ -.|.+-||.-|..++..+
T Consensus 512 di~vnl~~~~~k~gpsadLaia~ailSa~ 540 (615)
T TIGR02903 512 DIHVNVIGGGRIDGPSAGAAITLCMISAI 540 (615)
T ss_pred eEEEEcCCCCCCCCchHHHHHHHHHHHhc
Confidence 22 246789999888877664
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=2e-13 Score=151.96 Aligned_cols=175 Identities=27% Similarity=0.358 Sum_probs=114.9
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhHhh--hCCC-CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hHhhh
Q 005066 226 VKGVDEAKQELEEIVHY-LRDPKRFTR--LGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVGV 300 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~-L~~~~~~~~--lg~~-~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~vg~ 300 (715)
|+|++++|+.|...+.. ++....... -... ...++||+||||||||++|+++|..++.||+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999766532 111100000 0111 2357999999999999999999999999999999998764 47776
Q ss_pred hHHH-HHHHHHHH----HhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccc-----------cCCCEE
Q 005066 301 GARR-VRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFK-----------QNEGII 361 (715)
Q Consensus 301 ~~~~-vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~-----------~~~~Vi 361 (715)
.... +..++..+ ....++||||||||.+..++... .+-....+++.||..|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5433 44444432 34567999999999997653211 01111245667777776521 112356
Q ss_pred EEeecCCCC----------------------------------------------------cccccccCCCCcccccccC
Q 005066 362 VIAATNFPE----------------------------------------------------SLDKALVRPGRFDRHIVVP 389 (715)
Q Consensus 362 VIaaTN~p~----------------------------------------------------~LD~aLlRpgRFd~~I~v~ 389 (715)
+|.|+|-.. .+.|.|+ ||+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 666666410 0223333 5999999999
Q ss_pred CCCHHHHHHHHHH
Q 005066 390 NPDVEGRRQIMES 402 (715)
Q Consensus 390 ~Pd~~eR~~ILk~ 402 (715)
+.+.++..+|+..
T Consensus 311 ~L~~~~L~~Il~~ 323 (412)
T PRK05342 311 ELDEEALVRILTE 323 (412)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999974
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.2e-13 Score=164.83 Aligned_cols=217 Identities=20% Similarity=0.301 Sum_probs=143.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh--------
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-------- 295 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-------- 295 (715)
.|..|++++|+.+.+++...+.. +......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 45899999999998877753321 1112336999999999999999999999999999998765432
Q ss_pred -hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-----cc--------cCCCEE
Q 005066 296 -MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-----FK--------QNEGII 361 (715)
Q Consensus 296 -~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~-----~~--------~~~~Vi 361 (715)
.|.|.....+...+..+....| ||||||||.+....... ....|+..+|. |. .-++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceE
Confidence 2555555566666666544444 89999999997542211 12344444442 11 237899
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-c-----cCCcc--c---HHHHH-hcCCCCCHHH
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-L-----KADDV--D---LMIIA-RGTPGFSGAD 429 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-~-----~~~dv--d---l~~la-~~t~G~sgad 429 (715)
+|+|+|.. .|+++|+. ||. .|.++.++.++..+|++.|+... . ....+ + +..|+ .++..+-.+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999987 49999997 996 78999999999999999999521 1 11112 1 23343 3344444566
Q ss_pred HHHHHHHHHHHHH----HcCC---CccCHHHHHHHH
Q 005066 430 LANLVNIAALKAA----MDGA---KAVTMADLEYAK 458 (715)
Q Consensus 430 I~~lv~~A~~~A~----~~~~---~~It~edl~~A~ 458 (715)
|+.+++..+.... ..+. -.|+.+++.+-+
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 6655554443333 2221 257777776554
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.1e-13 Score=152.52 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=138.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 284 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------------- 284 (715)
.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 467899999999999988877652 4567789999999999999999999988542
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.+++... .+...++.+-+.. ......|+||||+|.+. ....+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHH
Confidence 222322111 1123344333222 12456799999999883 234677888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+. ..+.+++|.+||.+..|.+.+.+ |+. .++|+.++.++...+++..+++.... .+..+..|+..+.| +.+
T Consensus 144 ~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr 217 (451)
T PRK06305 144 TLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLR 217 (451)
T ss_pred Hhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8875 34577777788888888888887 774 78999999999999888887754322 22335667777654 445
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.++++.... ..+ ..|+.+++..++
T Consensus 218 ~a~~~Lekl~~---~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 218 DAESLYDYVVG---LFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHH---hcc-CCcCHHHHHHHH
Confidence 55555544332 223 458988887665
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3e-13 Score=153.64 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=141.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-------CeEEe-e
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFSC-S 289 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------~fi~i-s 289 (715)
+.+.+|+|++|++.+.+.|+..+.. ...+..+||+||||+|||++|+.+|..+++ |+-.+ +
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 3567899999999999988877652 345667899999999999999999998864 11111 1
Q ss_pred ccchhh-----hH-----hhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005066 290 GSEFEE-----MF-----VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 290 ~s~~~~-----~~-----vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+. ....+.|+..++.
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~LEe-- 145 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKTLEE-- 145 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHHHhc--
Confidence 111100 00 01223445555555432 345799999999873 2345777777774
Q ss_pred cCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHH
Q 005066 356 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLV 434 (715)
Q Consensus 356 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv 434 (715)
....+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++.+++.....- +..+..|+..+.| +.+++.+++
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~L 221 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLL 221 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34456666677778888888876 664 689999999999999999887654332 2235567776654 667777777
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHH
Q 005066 435 NIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 435 ~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.+... +...||.+++..++
T Consensus 222 dkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 222 DQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHh----cCCCcCHHHHHHHh
Confidence 766543 34568888887754
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3e-13 Score=156.72 Aligned_cols=209 Identities=21% Similarity=0.237 Sum_probs=147.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee--------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS-------- 289 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is-------- 289 (715)
..+.+|+||+|++.+++.|...+. .++.|.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 356789999999999999888665 2567789999999999999999999999865421111
Q ss_pred -----ccchh--------hhH--hhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 290 -----GSEFE--------EMF--VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 290 -----~s~~~--------~~~--vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
|..+. +.. ...+...+|++.+.++. ....|++|||+|.+. ....|.||..
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKt 155 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKT 155 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHH
Confidence 11111 000 01234567777776643 234799999999883 2346788888
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~G~sgad 429 (715)
|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++...+++..+++....-+ -.+..|+..+.| +.++
T Consensus 156 LEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 774 44567777777878888888876 76 47899999999999999988876543222 235556777654 7888
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.++++.+... +...|+.+++...+
T Consensus 230 al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 230 GLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 88888776544 23579999988654
No 112
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-13 Score=157.07 Aligned_cols=164 Identities=24% Similarity=0.386 Sum_probs=126.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh--------
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-------- 295 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-------- 295 (715)
.|=.|++++|+.+.|.+.-.+.. +.....-++|+||||+|||+|+++||+.++..|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 46789999999998877652221 1111125889999999999999999999999999998765433
Q ss_pred -hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh---------cc----ccCCCEE
Q 005066 296 -MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD---------GF----KQNEGII 361 (715)
Q Consensus 296 -~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld---------~~----~~~~~Vi 361 (715)
-|+|....++-+-..+|....| +++|||||.++.+-..... ..||..|| .+ -.-++|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhheE
Confidence 3889999999999999988877 7889999999764322211 12233232 11 1235799
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
+|+|.|..+.++.+|+- |+. +|+++-++.++..+|.+.||
T Consensus 469 FiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 99999999999999996 886 89999999999999999998
No 113
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=3.8e-13 Score=141.63 Aligned_cols=188 Identities=24% Similarity=0.230 Sum_probs=117.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh--hHhhh----hHHHHHH--------------------HHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE--MFVGV----GARRVRD--------------------LFSA 311 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~--~~vg~----~~~~vr~--------------------lF~~ 311 (715)
..+||+||||||||++|+++|..+|.||+.++|+.-.. ..+|. ....+.. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998864221 12221 1111111 1111
Q ss_pred HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------------ccCCCEEEEeecCCCC-----cc
Q 005066 312 AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--------------KQNEGIIVIAATNFPE-----SL 372 (715)
Q Consensus 312 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--------------~~~~~ViVIaaTN~p~-----~L 372 (715)
|.. .+.+|+|||||.+. ... .+.|+..|+.- ....++.||+|+|... .+
T Consensus 102 A~~-~g~~lllDEi~r~~--------~~~---q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK--------PET---NNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH-cCCEEEEcchhhCC--------HHH---HHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 222 34699999999762 223 34444444321 1224678999999763 56
Q ss_pred cccccCCCCcccccccCCCCHHHHHHHHHHHhhhh--ccCCcccHHHHHh-c--CCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 373 DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV--LKADDVDLMIIAR-G--TPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 373 D~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--~~~~dvdl~~la~-~--t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
+++|++ || ..+.++.|+.++..+|++.+..-. ....-+++..-.+ . ....+ ++.++.-+...+....+.
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~~~~~ 243 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQDIPV 243 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHcCCCC
Confidence 888987 88 478999999999999999875210 0000111111111 1 11222 555555555555556678
Q ss_pred ccCHHHHHHHHHHHhc
Q 005066 448 AVTMADLEYAKDKIMM 463 (715)
Q Consensus 448 ~It~edl~~A~~~i~~ 463 (715)
.++.+||.+.+..++.
T Consensus 244 ~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 244 DVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCcHHHHHHHHHHhc
Confidence 8999999988877654
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=150.65 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=140.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeE----------E
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFF----------S 287 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi----------~ 287 (715)
..+.+|++|+|++.+++.|+..++ .++.|..+||+||||+|||++|+++|+.+.+.-. .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 346789999999999998887665 3466778999999999999999999999966310 0
Q ss_pred eeccc------hhh-------hHhh---hhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005066 288 CSGSE------FEE-------MFVG---VGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 347 (715)
Q Consensus 288 is~s~------~~~-------~~vg---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 347 (715)
-.|.. +.. .+.+ .+...++++.+.+.. ....|+||||+|.+. ....+.|
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~~~~L 147 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAAFNAF 147 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHHHHHH
Confidence 01110 000 0011 123455665555421 233699999999883 2345667
Q ss_pred HHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCC
Q 005066 348 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFS 426 (715)
Q Consensus 348 L~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~s 426 (715)
+..++. ..+..++|.+|+.+..+-+.+.+ |.. .++|++++.++....++..++.... -.+-.+..|+..+.| +
T Consensus 148 Lk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~ 221 (397)
T PRK14955 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-S 221 (397)
T ss_pred HHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 777763 34456666666777778788776 664 7899999999988888888765432 122234556666654 6
Q ss_pred HHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 005066 427 GADLANLVNIAALKAAM-DGAKAVTMADLEYAK 458 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~-~~~~~It~edl~~A~ 458 (715)
.+.+.+.++.+..++.. .....|+.+++...+
T Consensus 222 lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 222 MRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 66777777766555432 234689998887765
No 115
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=6e-13 Score=150.10 Aligned_cols=191 Identities=15% Similarity=0.213 Sum_probs=128.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccchhhhHhhhhHH---HHHHHHHHHHhCCCeEEEEcCchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEMFVGVGAR---RVRDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~~~~~vg~~~~---~vr~lF~~A~~~~P~ILfIDEID~l 328 (715)
.++++|||++|+|||+|++++++++ +..++++++.+|...+...... .+...... -..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999965 5788899999888776543222 12222222 234679999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc---ccccccCCCCccc--ccccCCCCHHHHHHHHHHH
Q 005066 329 GGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 329 ~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~ 403 (715)
.++. .....+..+++.+ ...++.+||.+...|.. +++.|.+ ||.. .+.+.+|+.++|.+||+.+
T Consensus 219 ~~k~------~~~e~lf~l~N~~---~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 219 SYKE------KTNEIFFTIFNNF---IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred cCCH------HHHHHHHHHHHHH---HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHH
Confidence 5321 2222333333332 23334444444444443 5677776 8864 5578999999999999999
Q ss_pred hhhhcc---CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-CCccCHHHHHHHHHHH
Q 005066 404 MSKVLK---ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-AKAVTMADLEYAKDKI 461 (715)
Q Consensus 404 l~~~~~---~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-~~~It~edl~~A~~~i 461 (715)
++.... -++--+..|+....| +.+.|.++|+.....+.... ...|+.+.+++++..+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 976432 112224567777765 88999999998876665543 3689999999998765
No 116
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=2.5e-13 Score=149.29 Aligned_cols=174 Identities=31% Similarity=0.437 Sum_probs=124.2
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhHhhh-CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hHhh-h
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRFTRL-GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVG-V 300 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~~~l-g~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~vg-~ 300 (715)
-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999766553 2221111111 1235789999999999999999999999999999999988764 5666 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 005066 301 GARRVRDLFSAA-------------------------------------------------------------------- 312 (715)
Q Consensus 301 ~~~~vr~lF~~A-------------------------------------------------------------------- 312 (715)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 455555555544
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q 005066 313 -----------------------------------------------------------------------KKRSPCIIF 321 (715)
Q Consensus 313 -----------------------------------------------------------------------~~~~P~ILf 321 (715)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred EcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEeecC----CCCcccccccCCCCccccccc
Q 005066 322 IDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFDRHIVV 388 (715)
Q Consensus 322 IDEID~l~~~r~~~~-~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~v 388 (715)
|||||.+..+..+.. +-....+...||..++|- -..++|++|++-- .|+.|=|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999987653222 222345667888888773 2346788887754 3455556666 699999999
Q ss_pred CCCCHHHHHHHH
Q 005066 389 PNPDVEGRRQIM 400 (715)
Q Consensus 389 ~~Pd~~eR~~IL 400 (715)
..++.++..+||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999999988
No 117
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.8e-13 Score=155.16 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=144.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------- 284 (715)
..+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+.+.+.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 356789999999999999887765 24567789999999999999999999998652
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.+++.. ..+...++++...+. .....|++|||+|.+. ...++.||.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 12222111 012344555554432 2345799999999883 345778888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.++. +...+++|.+|+.++.|.+++.+ |+. .+.|.+++.++..++++..+.+.... .+-.+..|+....| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8774 55678888888888889888887 775 68999999999999998887654332 22335557777655 778
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++..+..++ ...|+.+++...+
T Consensus 216 ~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8888887665442 2468888887664
No 118
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.2e-12 Score=143.79 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=154.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-----eEEeeccchhhhHh-
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-----FFSCSGSEFEEMFV- 298 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-----fi~is~s~~~~~~v- 298 (715)
.+.+.++..+.+..++.. .+.+..|.++++|||||||||.+++.+++++.-+ ++++||-...+.|.
T Consensus 18 ~l~~Re~ei~~l~~~l~~--------~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAP--------ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHH--------HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 499999998888876553 2234556679999999999999999999998443 89999977654421
Q ss_pred --------------hhh-HHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEE
Q 005066 299 --------------GVG-ARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIV 362 (715)
Q Consensus 299 --------------g~~-~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViV 362 (715)
|.. ......+++... ....-||+|||+|.|..+.. .++..|+...+.. ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 111 122233333333 24567999999999976542 6778888766654 567899
Q ss_pred EeecCCCC---cccccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhccCCccc---HHHHH---hcCCCCCHHHHHH
Q 005066 363 IAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIA---RGTPGFSGADLAN 432 (715)
Q Consensus 363 IaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd---l~~la---~~t~G~sgadI~~ 432 (715)
|+.+|..+ .+|+.+.+ +|. ..|.||+++.++...|++..++.......++ +..++ ....| ..+---.
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aid 236 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAID 236 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHH
Confidence 99999764 57888876 432 3589999999999999999997654433332 22222 33333 3333348
Q ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 433 LVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 433 lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
+|+.|+..|.+++...++.+|+..|.+.+
T Consensus 237 ilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 237 ILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 99999999999999999999999995544
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=1.3e-12 Score=135.43 Aligned_cols=206 Identities=14% Similarity=0.145 Sum_probs=127.8
Q ss_pred CCCCCCccCC-C-cHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccc
Q 005066 218 ESNTKFSDVK-G-VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~-G-~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~ 292 (715)
.++.+|++.+ | ...+...++.+.. . ..+..++|+||||||||+|++++++++. ..+.+++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4567899877 4 4445555554432 1 1224799999999999999999998763 4455555544
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC-EEEEeecCCCCc
Q 005066 293 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG-IIVIAATNFPES 371 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~-ViVIaaTN~p~~ 371 (715)
+... ..++++.... ..+|+|||++.+.++ ......+..++..+ ...++ .+++.+++.|..
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~------~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD------ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQ 144 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC------HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHH
Confidence 3221 1122222222 258999999988532 12222333333332 22333 355555566655
Q ss_pred ---ccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 372 ---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 372 ---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
+.|.|.+ |+. .++.+.+|+.+++.++++.+....... ++--+..|++...| +.+.+.++++... .+....
T Consensus 145 l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~l~~ 220 (235)
T PRK08084 145 LNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD-RASITA 220 (235)
T ss_pred cCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH-HHHHhc
Confidence 5688887 875 578999999999999999866543222 22225567777764 7888888888753 333333
Q ss_pred CCccCHHHHHHHH
Q 005066 446 AKAVTMADLEYAK 458 (715)
Q Consensus 446 ~~~It~edl~~A~ 458 (715)
.+.||.+.+++++
T Consensus 221 ~~~it~~~~k~~l 233 (235)
T PRK08084 221 QRKLTIPFVKEIL 233 (235)
T ss_pred CCCCCHHHHHHHH
Confidence 4569988888765
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.4e-13 Score=151.50 Aligned_cols=202 Identities=22% Similarity=0.268 Sum_probs=144.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
..+.+|+||+|++.+++.|+..+. .++.|..+|||||||+|||++|+++|+.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 356789999999999999987765 2456778899999999999999999998742
Q ss_pred ----------CeEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 284 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 284 ----------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
.++.+++++ ..+...++++...... ....|++|||+|.+. ...++.||.
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 122222211 0123456666655322 223699999999883 345778888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sga 428 (715)
.|+.. ...+.+|.+|+.+..|.+.+++ |. .+++|.+++.++....++..+++.... .+-.+..|+....| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88854 4567777777888899999987 75 488999999999999888888765332 22345667777665 778
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
++.+++..+...+ ...||.+++...
T Consensus 214 ~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 214 DTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8888887776554 346787777654
No 121
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.50 E-value=2.1e-13 Score=144.52 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=131.6
Q ss_pred CCCCccCCCcHHHHHH---HHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC---eEEeeccch
Q 005066 220 NTKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEF 293 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~e---L~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~---fi~is~s~~ 293 (715)
+.+++|.+|++++..+ |+.+++. ...| .++|+||||||||+||+.|+....-+ |+.++...-
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq-----------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ-----------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc-----------CCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 3578999999876544 3333332 1222 69999999999999999999988766 777776442
Q ss_pred hhhHhhhhHHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec--
Q 005066 294 EEMFVGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT-- 366 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT-- 366 (715)
+...+|++|+.++. ....|||||||+.+-.. ....||-. ..++.|++|++|
T Consensus 202 -------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-----------QQD~fLP~----VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 202 -------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-----------QQDTFLPH----VENGDITLIGATTE 259 (554)
T ss_pred -------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-----------hhhcccce----eccCceEEEecccC
Confidence 34568888988864 34589999999987321 11223322 235678888776
Q ss_pred CCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh--------ccCC-c--cc---HHHHHhcCCCCCHHHHHH
Q 005066 367 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV--------LKAD-D--VD---LMIIARGTPGFSGADLAN 432 (715)
Q Consensus 367 N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--------~~~~-d--vd---l~~la~~t~G~sgadI~~ 432 (715)
|..-.|..+|++ |. +++.+...+.+....||.+-..-. .+.. . ++ ++.++..++|-..+.|..
T Consensus 260 NPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 260 NPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred CCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 333468889987 65 467888889999999998854311 0111 1 21 455777787754444433
Q ss_pred HHHHHHHHHHHcC---CCccCHHHHHHHHHH
Q 005066 433 LVNIAALKAAMDG---AKAVTMADLEYAKDK 460 (715)
Q Consensus 433 lv~~A~~~A~~~~---~~~It~edl~~A~~~ 460 (715)
|--.+-+...+.+ +..++.+|+++++.+
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 2222223333444 347889999888764
No 122
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=1.7e-13 Score=148.43 Aligned_cols=217 Identities=24% Similarity=0.331 Sum_probs=132.8
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-------CCCe--EEeec
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPF--FSCSG 290 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------~~~f--i~is~ 290 (715)
+..|++|+|++++++.|.-.+- ++ | ..++||+|+||||||++|+++++.+ +.++ ..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 5679999999999888773211 11 1 1379999999999999999999988 3322 11110
Q ss_pred c-ch---------------hhhHhhhhHHHHHH-------------HHHH--HHhCCCeEEEEcCchhhcCCCCCCchHH
Q 005066 291 S-EF---------------EEMFVGVGARRVRD-------------LFSA--AKKRSPCIIFIDEIDAIGGSRNPKDQQY 339 (715)
Q Consensus 291 s-~~---------------~~~~vg~~~~~vr~-------------lF~~--A~~~~P~ILfIDEID~l~~~r~~~~~~~ 339 (715)
. ++ .....+.+...+-. .|.. .......+||||||+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~---------- 141 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE---------- 141 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC----------
Confidence 0 00 00000000000000 0110 001223599999999873
Q ss_pred HHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC-cccccccCCCCcccccccCCCCH-HHHHHHHHHHhhh
Q 005066 340 MKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSK 406 (715)
Q Consensus 340 ~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk~~l~~ 406 (715)
..++..|+..|+.- .....+++|+++|..+ .++++|+. ||...+.+++|.. ++|.+|++.....
T Consensus 142 -~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~ 218 (334)
T PRK13407 142 -DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAY 218 (334)
T ss_pred -HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcc
Confidence 23444555555321 1245689999999755 58888887 9999999988766 8999999875421
Q ss_pred hc----c------C---------------Ccc--c------HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005066 407 VL----K------A---------------DDV--D------LMIIARGTP-GFSGADLANLVNIAALKAAMDGAKAVTMA 452 (715)
Q Consensus 407 ~~----~------~---------------~dv--d------l~~la~~t~-G~sgadI~~lv~~A~~~A~~~~~~~It~e 452 (715)
.. . . ..| + +..++..+. .-..++|. +++.|...|+.+|++.|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~ 297 (334)
T PRK13407 219 DADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRS 297 (334)
T ss_pred cccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHH
Confidence 00 0 0 001 0 112232222 12345665 99999999999999999999
Q ss_pred HHHHHHHHHh
Q 005066 453 DLEYAKDKIM 462 (715)
Q Consensus 453 dl~~A~~~i~ 462 (715)
|+..+..-++
T Consensus 298 Di~~~~~~vl 307 (334)
T PRK13407 298 HLRSVATMAL 307 (334)
T ss_pred HHHHHHHHhh
Confidence 9988775554
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=7e-13 Score=138.60 Aligned_cols=184 Identities=24% Similarity=0.292 Sum_probs=126.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------eEEeecc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------FFSCSGS 291 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~------fi~is~s 291 (715)
..+.+|+|+.|++.+.+.|+..+.. ..-.++|||||||||||+.|+++|+++..+ +...+.|
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 3577899999999999999876553 112279999999999999999999999762 3334555
Q ss_pred chhhhHhhhhHHHHHHHHHHHHh---------CCC-eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKK---------RSP-CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 361 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~---------~~P-~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~Vi 361 (715)
+....-+ ...++. -|.+... ..| -|++|||.|.+. ....+.|.+.|+.+. ..+.
T Consensus 98 derGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~s--~~tr 161 (346)
T KOG0989|consen 98 DERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDFS--RTTR 161 (346)
T ss_pred ccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhccc--cceE
Confidence 4433211 111111 1222211 122 699999999883 455677888888644 4567
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHH
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNI 436 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~ 436 (715)
+|..||+++.|...+.+ |.. .+.|++.+.+.....|+.+..+....-+.| +..|+..+.| ||+..+..
T Consensus 162 FiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait~ 230 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAITT 230 (346)
T ss_pred EEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHH
Confidence 78889999999988887 775 678888777777888888887665543333 5567776655 77765543
No 124
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=2e-13 Score=150.17 Aligned_cols=175 Identities=29% Similarity=0.408 Sum_probs=125.6
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhHhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hHhh-h
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVG-V 300 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg-~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~vg-~ 300 (715)
.|+|++++|+.+...+.. ++.......+. ...|+++||+||||||||++|++||..++.||+.++++.|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999876642 22111000111 123689999999999999999999999999999999998886 5777 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 005066 301 GARRVRDLFSAAK------------------------------------------------------------------- 313 (715)
Q Consensus 301 ~~~~vr~lF~~A~------------------------------------------------------------------- 313 (715)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4556666665551
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 005066 314 -----------------------------------------------------------------------KRSPCIIFI 322 (715)
Q Consensus 314 -----------------------------------------------------------------------~~~P~ILfI 322 (715)
...-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEeecC----CCCcccccccCCCCcccccccC
Q 005066 323 DEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFDRHIVVP 389 (715)
Q Consensus 323 DEID~l~~~r~~~~-~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~v~ 389 (715)
||||.|..+..... +-....+...||..++|- -..++|++|++-- .|+.|-|.|. |||..++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999987643222 222345667788888772 2346788887654 3555667776 6999999999
Q ss_pred CCCHHHHHHHHH
Q 005066 390 NPDVEGRRQIME 401 (715)
Q Consensus 390 ~Pd~~eR~~ILk 401 (715)
.++.++..+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999983
No 125
>PRK08727 hypothetical protein; Validated
Probab=99.47 E-value=2.9e-12 Score=132.67 Aligned_cols=207 Identities=20% Similarity=0.242 Sum_probs=126.7
Q ss_pred CCCCCCccCCCcH-HHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccch
Q 005066 218 ESNTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 293 (715)
Q Consensus 218 ~~~~~f~dv~G~d-~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~ 293 (715)
.+..+|++.++.+ +....+..+. . ......++|+||+|||||+|+++++.++ +...++++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~---------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---A---------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---h---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 4567899976544 3333222211 1 1223469999999999999999997765 566677775554
Q ss_pred hhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc-
Q 005066 294 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL- 372 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L- 372 (715)
... +.+.++... ...+|+|||+|.+..+. .....+..++..+ ...+.-+|+.+.+.|..+
T Consensus 81 ~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 81 AGR--------LRDALEALE--GRSLVALDGLESIAGQR------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLA 141 (233)
T ss_pred hhh--------HHHHHHHHh--cCCEEEEeCcccccCCh------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhh
Confidence 322 233444332 34699999999885432 1222333444332 222333444444466654
Q ss_pred --cccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 373 --DKALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 373 --D~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
++.|.+ || ...+.+++|+.+++.+|++.++...... ++-.+..|+..+.| +.+.+.++++.....+...+ +
T Consensus 142 ~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~ 217 (233)
T PRK08727 142 LVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-R 217 (233)
T ss_pred hhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-C
Confidence 688887 86 4567999999999999999877643222 22235567777664 45555566765544344444 5
Q ss_pred ccCHHHHHHHHH
Q 005066 448 AVTMADLEYAKD 459 (715)
Q Consensus 448 ~It~edl~~A~~ 459 (715)
.||...+++.+.
T Consensus 218 ~it~~~~~~~l~ 229 (233)
T PRK08727 218 RVTVPFLRRVLE 229 (233)
T ss_pred CCCHHHHHHHHh
Confidence 789888887764
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=1.2e-12 Score=140.30 Aligned_cols=202 Identities=22% Similarity=0.247 Sum_probs=129.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-----CCeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-----~~fi~is~s~ 292 (715)
..+.+|+|++|.+++++.|+..+.. ...| ++||+||||||||++++++++++. .+++.+++++
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKE-----------KNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhC-----------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 4567999999999999888876641 1122 589999999999999999999873 3455555443
Q ss_pred hhhhHhhhhHHHHHHHHHH-HHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 293 FEEMFVGVGARRVRDLFSA-AKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~-A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
... ...++..+.. +.. ..+.+|+|||+|.+.. ...+.|+..++.... ...+|.++
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~lIl~~ 139 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQ--NTRFILSC 139 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCC--CCeEEEEe
Confidence 211 1112222221 111 2356999999998731 112345555554333 34556667
Q ss_pred CCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 367 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 367 N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
|.+..+.+.+.+ |+. .++|++|+.++...+++.++++.... .+-.+..++..+.| +.+.+.+.++.+ +..
T Consensus 140 ~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~---~~~-- 210 (319)
T PRK00440 140 NYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA---AAT-- 210 (319)
T ss_pred CCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH---HHc--
Confidence 777777777776 665 58999999999999999998765332 22345667776544 344444444332 222
Q ss_pred CCccCHHHHHHHHH
Q 005066 446 AKAVTMADLEYAKD 459 (715)
Q Consensus 446 ~~~It~edl~~A~~ 459 (715)
...||.+++..++.
T Consensus 211 ~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 GKEVTEEAVYKITG 224 (319)
T ss_pred CCCCCHHHHHHHhC
Confidence 36799999987753
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=151.21 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF------------ 285 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f------------ 285 (715)
..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3567899999999999998877652 34566789999999999999999999886422
Q ss_pred -------------EEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHH
Q 005066 286 -------------FSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLL 348 (715)
Q Consensus 286 -------------i~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL 348 (715)
+.++.+. ..+...++++.+.+.. ....||||||+|.+. ...++.||
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 1111110 1122345555444322 234699999999883 24567788
Q ss_pred HHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCH
Q 005066 349 VELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSG 427 (715)
Q Consensus 349 ~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sg 427 (715)
..|+.. ...+++|.+++.++.+.+.+.+ |+. .+.|+.++..+...+++..+.+.... .+-.+..|+..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777753 3456777777777778787776 664 68899999999999888887654332 22235567777655 67
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 428 ADLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 428 adI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
+++.+.++....+ +...|+.+++...+.
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 7777777654332 345799998877653
No 128
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=6.5e-13 Score=144.46 Aligned_cols=220 Identities=24% Similarity=0.260 Sum_probs=139.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-------CCeEEeecc
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGS 291 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-------~~fi~is~s 291 (715)
+...|++|+|++++|..|.-.+. +| ...|+||.||+|||||++||+++..+. .||. ....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 34579999999999988874322 22 124899999999999999999987762 3443 1000
Q ss_pred -------chhhh-------------------HhhhhHHHH------HHHHHHHH---------hCCCeEEEEcCchhhcC
Q 005066 292 -------EFEEM-------------------FVGVGARRV------RDLFSAAK---------KRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 292 -------~~~~~-------------------~vg~~~~~v------r~lF~~A~---------~~~P~ILfIDEID~l~~ 330 (715)
.+... -.+....++ ...|.... ....++||||||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 00000 011111111 11111111 1224699999999884
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc---------c--ccCCCEEEEeecCCCC-cccccccCCCCcccccccCCCC-HHHHH
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDG---------F--KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPD-VEGRR 397 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd-~~eR~ 397 (715)
..+...|+..|+. . .....+++|++.|..+ .+.++|+. ||..++.+..|+ .+.+.
T Consensus 158 ----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 ----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2233444444432 1 1235688899888665 58888887 999999999887 69999
Q ss_pred HHHHHHhhhh--cc-----------------------CCccc--------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 398 QIMESHMSKV--LK-----------------------ADDVD--------LMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 398 ~ILk~~l~~~--~~-----------------------~~dvd--------l~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
+|++...... .. ...|. +..++..+.--|.+--..+++.|...|+.+
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 9998753210 00 00111 122333333335666667888899999999
Q ss_pred CCCccCHHHHHHHHHHHhcc
Q 005066 445 GAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 445 ~~~~It~edl~~A~~~i~~g 464 (715)
|++.|+.+|+..+..-++..
T Consensus 306 GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 306 GRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=2e-12 Score=133.00 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=119.4
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
.++.+++|+|++.+|+.|.+-... | +.+.+..++||+|++|||||+++|++..++ |..++.+...++..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~------F--l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQ------F--LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH------H--HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 468999999999999998764432 2 235678899999999999999999999877 78889888777643
Q ss_pred hHhhhhHHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEeecCCCCcc
Q 005066 296 MFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPESL 372 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~~~~~ViVIaaTN~p~~L 372 (715)
+..+++..+. ..+-|||+|++. + . ..+.. ...|-..|||- ..+.+|+|.+|+|+-+.+
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs-F-e---~~d~~-----yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS-F-E---EGDTE-----YKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC-C-C---CCcHH-----HHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 3455555543 345799999874 2 1 11222 23334445553 346789999999977654
Q ss_pred ccccc----------C-----------CCCcccccccCCCCHHHHHHHHHHHhhhhcc
Q 005066 373 DKALV----------R-----------PGRFDRHIVVPNPDVEGRRQIMESHMSKVLK 409 (715)
Q Consensus 373 D~aLl----------R-----------pgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~ 409 (715)
++.+. . ..||...|.|.+||.++-.+|+++++++...
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~ 212 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGL 212 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 43221 1 2499999999999999999999999976544
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.2e-12 Score=150.35 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=138.1
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE----eecc---
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS----CSGS--- 291 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~----is~s--- 291 (715)
.+.+|++|+|++.+++.|+..+.. .+.+.++||+||||+|||++|+++|+.+++.... -.|.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 457899999999999999887763 2345689999999999999999999998763110 0111
Q ss_pred -----------chh--hhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005066 292 -----------EFE--EMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 292 -----------~~~--~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~ 354 (715)
++. +.....+...+|++...+.. ....|+||||+|.+. ....+.||..|+.
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~LEe- 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLKTLEE- 147 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHHHHhc-
Confidence 000 01112345677888877643 234699999999883 3456888888884
Q ss_pred ccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHH
Q 005066 355 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANL 433 (715)
Q Consensus 355 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~l 433 (715)
....+++|++|+.++.+-+.+++ |+. .+.|+.++.++....++..+.+.... .+..+..++..+.| +.+++.++
T Consensus 148 -Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~l 222 (620)
T PRK14948 148 -PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESL 222 (620)
T ss_pred -CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45667888888888888888876 764 67888998888888777777654222 12235567777655 44566666
Q ss_pred HHHHHHHHHHcCCCccCHHHHHH
Q 005066 434 VNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 434 v~~A~~~A~~~~~~~It~edl~~ 456 (715)
++...+. . ..|+.+++..
T Consensus 223 LeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 223 LDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHhc---c--CCCCHHHHHH
Confidence 6543322 1 2466666543
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.2e-12 Score=149.88 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=140.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE----------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---------- 287 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~---------- 287 (715)
..+.+|+||+|++.+++.|+..+. ..+.|.++||+||||+|||++|+++|+.+.+.--.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356789999999999999887655 35677789999999999999999999999762100
Q ss_pred eecc------chhh-------hHhh---hhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005066 288 CSGS------EFEE-------MFVG---VGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 347 (715)
Q Consensus 288 is~s------~~~~-------~~vg---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 347 (715)
-.|. .+.. .+.+ .+...++++.+.+. .....|++|||+|.+. ....+.|
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~naL 147 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNAF 147 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHHH
Confidence 0111 0100 0011 12345666555542 2334699999999883 2346778
Q ss_pred HHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCC
Q 005066 348 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFS 426 (715)
Q Consensus 348 L~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~s 426 (715)
+..|+. ..+.+++|.+|+.++.|.+.+.+ |. ..++|..++.++....++..+++... -.+..+..|+..+.| +
T Consensus 148 LK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-d 221 (620)
T PRK14954 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-S 221 (620)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 887774 33456666666777888888876 65 37899999999988888887765432 223335567777654 5
Q ss_pred HHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 005066 427 GADLANLVNIAALKAAM-DGAKAVTMADLEYAK 458 (715)
Q Consensus 427 gadI~~lv~~A~~~A~~-~~~~~It~edl~~A~ 458 (715)
.+++.+.++....++.. .....|+.+++.+.+
T Consensus 222 lr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 222 MRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 56666666554444421 224678888887765
No 132
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=1.8e-12 Score=143.82 Aligned_cols=216 Identities=27% Similarity=0.334 Sum_probs=131.9
Q ss_pred cCCCcHHHHHHHHHHHHH----hcCc-hhHhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hH
Q 005066 225 DVKGVDEAKQELEEIVHY----LRDP-KRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MF 297 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~----L~~~-~~~~~lg~~-~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~ 297 (715)
-|+|++++++.+...+.. ++.. ......+.. .+.++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999766631 2110 000000111 1357999999999999999999999999999999888753 47
Q ss_pred hhhh-HHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------cCC
Q 005066 298 VGVG-ARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK-----------QNE 358 (715)
Q Consensus 298 vg~~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~Ld~~~-----------~~~ 358 (715)
+|.. ...+..++..+ ....++||||||||.+..++.... ......+.+.||..|+|.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 33344444322 235678999999999976532211 1111235566666666532 123
Q ss_pred CEEEEeecCCCC--------------------------------------------------cccccccCCCCccccccc
Q 005066 359 GIIVIAATNFPE--------------------------------------------------SLDKALVRPGRFDRHIVV 388 (715)
Q Consensus 359 ~ViVIaaTN~p~--------------------------------------------------~LD~aLlRpgRFd~~I~v 388 (715)
+.++|.|+|-.- .+.|.|+ ||+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 577888888510 0224444 499988999
Q ss_pred CCCCHHHHHHHHHHHh----hhh---ccCCccc-------HHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Q 005066 389 PNPDVEGRRQIMESHM----SKV---LKADDVD-------LMIIARG--TPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 389 ~~Pd~~eR~~ILk~~l----~~~---~~~~dvd-------l~~la~~--t~G~sgadI~~lv~~A~~~A~ 442 (715)
.+.+.+++.+|+...+ +.+ .....++ +..|++. ...+-.+.|+.+++....-..
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 9999999999987642 221 1111111 3345543 344555677776665554443
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=5.6e-12 Score=130.59 Aligned_cols=211 Identities=17% Similarity=0.169 Sum_probs=131.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
.++.+|++.+.... ....+.+..+.. ..+......++|+||+|||||+|++++++++ +..+++++..++.
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~-----~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCE-----ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhh-----ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 45678999873221 223333322111 0111234679999999999999999998765 6778888887765
Q ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc--
Q 005066 295 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL-- 372 (715)
Q Consensus 295 ~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L-- 372 (715)
... ..+.+..+. ..+|+|||++.+.++. .....+..++ +.+...+..+||+++..|..+
T Consensus 86 ~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~------~~~~~Lf~l~---n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 86 DRG--------PELLDNLEQ--YELVCLDDLDVIAGKA------DWEEALFHLF---NRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred hhh--------HHHHHhhhh--CCEEEEechhhhcCCh------HHHHHHHHHH---HHHHhcCCEEEEeCCCCHHHcCc
Confidence 431 122223322 2589999999885431 1122233333 333445566777777666543
Q ss_pred -cccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005066 373 -DKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 448 (715)
Q Consensus 373 -D~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 448 (715)
.|.|.+ ||. ..+.+.+|+.+++.+|++..+..... -++--+..|+.... -+.+.+.++++.-.. +.....+.
T Consensus 147 ~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~-~~l~~~~~ 222 (234)
T PRK05642 147 KLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQ-ASLQAQRK 222 (234)
T ss_pred cCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHH-HHHHcCCc
Confidence 577876 874 46678999999999999966654322 12222455777765 478888888876654 33334466
Q ss_pred cCHHHHHHHH
Q 005066 449 VTMADLEYAK 458 (715)
Q Consensus 449 It~edl~~A~ 458 (715)
||..-+++++
T Consensus 223 it~~~~~~~L 232 (234)
T PRK05642 223 LTIPFLKETL 232 (234)
T ss_pred CCHHHHHHHh
Confidence 8888777664
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=9.5e-13 Score=156.12 Aligned_cols=165 Identities=22% Similarity=0.307 Sum_probs=115.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-----hHhh
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-----MFVG 299 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk-gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-----~~vg 299 (715)
|+|++++++.|.+.+...+..- .....|. .+||+||||||||.+|+++|..++.+|+.++++++.+ .++|
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 7899999998888776532110 0012344 5999999999999999999999999999999998754 2333
Q ss_pred hhHHH-----HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCCEEEEee
Q 005066 300 VGARR-----VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEGIIVIAA 365 (715)
Q Consensus 300 ~~~~~-----vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~-------~~~~ViVIaa 365 (715)
..... -..+....+....+||||||||.+. ..+.+.|+..||.- . .-.+++||+|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 21111 1123333455666999999999873 33556666666531 1 1246889999
Q ss_pred cCCC-------------------------CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 366 TNFP-------------------------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 366 TN~p-------------------------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
||.- ..+.|.|+. |+|.+|.|++.+.++..+|+..++.+.
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9932 124466665 999999999999999999998887643
No 135
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.1e-12 Score=145.94 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=155.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------eEEe-e
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSC-S 289 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------fi~i-s 289 (715)
+.+.+|+||+|++.+...|++.+.. .+.+.+.||+||.|||||++||.+|+.+++. +..+ +
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4567899999999999999988774 3445589999999999999999999998654 2111 1
Q ss_pred c--------cchhhh--HhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005066 290 G--------SEFEEM--FVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 290 ~--------s~~~~~--~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
| .++.+. -...+...+|++.+.+. ...+-|.+|||+|.+ ....+|.||..++ .
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--E 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--c
Confidence 1 111111 11234566788777763 234579999999987 5678999999998 4
Q ss_pred cCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHH
Q 005066 356 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLV 434 (715)
Q Consensus 356 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv 434 (715)
+..+|++|.+|..++.+++.+++ |.. ++.|..-+.++....|+..+.+.....+.+ +..|++...| |.+|...++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 77899999999999999999987 663 667888899999999998887765544443 5667877776 789999999
Q ss_pred HHHHHHHHHcCCCccCHHHHHHH
Q 005066 435 NIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 435 ~~A~~~A~~~~~~~It~edl~~A 457 (715)
+++.... ...|+.+++...
T Consensus 222 Dq~i~~~----~~~It~~~v~~~ 240 (515)
T COG2812 222 DQAIAFG----EGEITLESVRDM 240 (515)
T ss_pred HHHHHcc----CCcccHHHHHHH
Confidence 9877654 256777666543
No 136
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.42 E-value=2.8e-12 Score=131.57 Aligned_cols=200 Identities=24% Similarity=0.323 Sum_probs=121.8
Q ss_pred CCCCCCccCC-Cc--HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 218 ESNTKFSDVK-GV--DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 218 ~~~~~f~dv~-G~--d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.++.+|++.+ |. ..+...++.+.+ ++ ...-..++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~---~~-------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAE---NP-------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHH---ST-------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHh---cC-------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3577899985 53 333333444333 22 1122358999999999999999999876 67799999
Q ss_pred ccchhhhHhhhhHH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 290 GSEFEEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 290 ~s~~~~~~vg~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
+.+|...+...... .+..+.+.. ....+|+||+++.+.++ . .+...|+..++.+...++.+||++...
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~------~---~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK------Q---RTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH------H---HHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc------h---HHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 99988776543322 222222222 24579999999998532 2 223444444444455666777777666
Q ss_pred CCc---ccccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 369 PES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 369 p~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|.. +++.|.+ ||.. .+.+.+||.+.|.+|++..+......-+-+ +..|+.... -+.++|..+++.-..++
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 665 4566766 7765 568899999999999999997654432223 344666654 47888888887655544
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=3.2e-12 Score=152.53 Aligned_cols=162 Identities=27% Similarity=0.360 Sum_probs=115.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCC---CCCCe-EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh----
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKG-VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM---- 296 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~---~~pkg-vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~---- 296 (715)
.|+|++++++.+.+.+... +.|. ..|.+ +||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHH
Confidence 4778888888777766542 2222 23454 8999999999999999999999999999999987552
Q ss_pred -Hhhhh-----HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCEE
Q 005066 297 -FVGVG-----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGII 361 (715)
Q Consensus 297 -~vg~~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~Vi 361 (715)
++|.. ......+....+....+||||||||.+. ..+.+.|+..||... .-.+++
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 22221 1122234445556667999999999772 234566666665421 124688
Q ss_pred EEeecCCCC-------------------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005066 362 VIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 406 (715)
Q Consensus 362 VIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 406 (715)
||+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 999998642 13455654 99999999999999999999999865
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1e-11 Score=144.80 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=139.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 284 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------------- 284 (715)
.+.+|+||+|++.+++.|...+. .+..|..+|||||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 46789999999999998887765 34567789999999999999999999988632
Q ss_pred -----------eEEeeccchhhhHhhhhHHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 285 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 285 -----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++.+++++ ..+...++.+...+... ..-|++|||+|.+. ....+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHH
Confidence 22222211 11234566666655322 23599999999883 245678888
Q ss_pred HhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCCCCCHH
Q 005066 350 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGA 428 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~G~sga 428 (715)
.|+. .....++|.+|+.+..|-+.+++ |.. .+.|.+++.++....++..+.+....-+ -.+..|+..+.| +.+
T Consensus 144 ~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr 217 (614)
T PRK14971 144 TLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMR 217 (614)
T ss_pred HHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8875 34566777777777888888887 764 7899999999999998888876543322 235667777643 556
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
++.+++.....++ +.. |+.+++...+
T Consensus 218 ~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 6656655544433 323 8877776554
No 139
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.40 E-value=2.8e-12 Score=139.29 Aligned_cols=218 Identities=24% Similarity=0.272 Sum_probs=135.2
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-------CCCeE--------
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFF-------- 286 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------~~~fi-------- 286 (715)
.|+.|+|++++|..|.-.+ -+|. ..+++|.|+||+|||++++++++.+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4899999999988775221 1221 2379999999999999999999877 33332
Q ss_pred E-eeccc----------------hhhhHhhhhHHHHHHHHH--H-------------HHhCCCeEEEEcCchhhcCCCCC
Q 005066 287 S-CSGSE----------------FEEMFVGVGARRVRDLFS--A-------------AKKRSPCIIFIDEIDAIGGSRNP 334 (715)
Q Consensus 287 ~-is~s~----------------~~~~~vg~~~~~vr~lF~--~-------------A~~~~P~ILfIDEID~l~~~r~~ 334 (715)
. .+|.. |.+.-.+..+..+-.-.. . .......+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~----- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE----- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC-----
Confidence 0 00100 011101111111111100 0 011234699999999873
Q ss_pred CchHHHHHHHHHHHHHhhc----c-------ccCCCEEEEeecCCCC-cccccccCCCCcccccccCCCCH-HHHHHHHH
Q 005066 335 KDQQYMKMTLNQLLVELDG----F-------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPDV-EGRRQIME 401 (715)
Q Consensus 335 ~~~~~~~~~l~~LL~~Ld~----~-------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk 401 (715)
..+...|+..|+. + .....+++|+++|..+ .++++|+. ||..++.++.|+. ++|.+|++
T Consensus 145 ------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 145 ------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred ------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHH
Confidence 2233444444432 1 1234688999988655 58889987 9999999988875 88999998
Q ss_pred HHhhhh----c----c-----------------CCccc--------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005066 402 SHMSKV----L----K-----------------ADDVD--------LMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 448 (715)
Q Consensus 402 ~~l~~~----~----~-----------------~~dvd--------l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 448 (715)
...... . . ..++. +..++..+..-|.+.-..+++.|..+|+.+|+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~ 296 (337)
T TIGR02030 217 RRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTE 296 (337)
T ss_pred hhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 743210 0 0 01111 2223444433355666688999999999999999
Q ss_pred cCHHHHHHHHHHHhcc
Q 005066 449 VTMADLEYAKDKIMMG 464 (715)
Q Consensus 449 It~edl~~A~~~i~~g 464 (715)
|+.+|+..+..-++..
T Consensus 297 V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 297 VTVDDIRRVAVLALRH 312 (337)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998877653
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.6e-11 Score=135.21 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=156.0
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeecc
Q 005066 217 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGS 291 (715)
Q Consensus 217 ~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s 291 (715)
..++.+|++++.-+.-.....-....-.+ .+..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~-------~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAEN-------PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhc-------cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 35788999975433322211111111112 22233469999999999999999999987 3468899999
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
.|...++......-.+-|+.-. +-.+++||+|+.+.++.. .+++.-.++|.|. ..++-+|+.+-..|..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~--~qeefFh~FN~l~-------~~~kqIvltsdr~P~~ 221 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER--TQEEFFHTFNALL-------ENGKQIVLTSDRPPKE 221 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh--HHHHHHHHHHHHH-------hcCCEEEEEcCCCchh
Confidence 9988877665554455566554 456999999999976532 2444555566554 3455666666666765
Q ss_pred ---ccccccCCCCcccc--cccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 372 ---LDKALVRPGRFDRH--IVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 372 ---LD~aLlRpgRFd~~--I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
+++.|.+ ||... +.+.+||.+.|..||+.........-+-+ ...++.... -+.++|..+++.....+...+
T Consensus 222 l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 222 LNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred hccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 4577877 88764 57899999999999999776543332222 444666654 478999999988888887766
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 005066 446 AKAVTMADLEYAKDKIMMGSE 466 (715)
Q Consensus 446 ~~~It~edl~~A~~~i~~g~~ 466 (715)
+ .||.+.+.+++..+....+
T Consensus 299 ~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 299 R-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred c-cCcHHHHHHHHHHhhcccc
Confidence 4 8999999999988766444
No 141
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=6.8e-12 Score=116.32 Aligned_cols=121 Identities=48% Similarity=0.685 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhhHHH---HHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGARR---VRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~~~~---vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
..++++|+||||||||++++.+++.+ +.+++.+++.++........... ....+.......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34589999999999999999999999 89999999987765433222211 1222333445678999999999762
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccc----CCCEEEEeecCCCC--cccccccCCCCcccccccC
Q 005066 330 GSRNPKDQQYMKMTLNQLLVELDGFKQ----NEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVP 389 (715)
Q Consensus 330 ~~r~~~~~~~~~~~l~~LL~~Ld~~~~----~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~ 389 (715)
... ...++..+..+.. ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 --------~~~---~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 --------RGA---QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred --------HHH---HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 111 2233333333222 46788999999877 67777765 898777765
No 142
>PRK06620 hypothetical protein; Validated
Probab=99.38 E-value=1.3e-11 Score=126.37 Aligned_cols=194 Identities=14% Similarity=0.198 Sum_probs=121.6
Q ss_pred CCCCCCccCCCcH---HHHHHHHHHHHHhcCchhHhhhCCCCC--CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 218 ESNTKFSDVKGVD---EAKQELEEIVHYLRDPKRFTRLGGKLP--KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d---~~k~eL~eiv~~L~~~~~~~~lg~~~p--kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
.++.+|++++--+ .+...++++.+ .+ + ..| +.++||||||||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3566899865433 34444444332 11 2 123 579999999999999999999988764322 111
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc-
Q 005066 293 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES- 371 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~- 371 (715)
.. ...+ ....+|+|||||.+- .. .+..+++ .+...++.+||+++..|..
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~~-------~~----~lf~l~N---~~~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENWQ-------EP----ALLHIFN---IINEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccch-------HH----HHHHHHH---HHHhcCCEEEEEcCCCcccc
Confidence 10 1111 123699999999441 11 2223332 2234566788888776664
Q ss_pred -ccccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 372 -LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 372 -LD~aLlRpgRFd~--~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
+ ++|++ |+.. .+.+.+||.+.+..+++.++...... ++--+..|+....| +.+.+.++++.....+.. ..+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~~ 202 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI-SKR 202 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-cCC
Confidence 5 67776 8864 57899999999999999888754222 22235567777754 778888888775433333 346
Q ss_pred ccCHHHHHHHH
Q 005066 448 AVTMADLEYAK 458 (715)
Q Consensus 448 ~It~edl~~A~ 458 (715)
.||...+++++
T Consensus 203 ~it~~~~~~~l 213 (214)
T PRK06620 203 KITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHh
Confidence 78988887764
No 143
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.37 E-value=4.3e-12 Score=148.98 Aligned_cols=214 Identities=25% Similarity=0.322 Sum_probs=138.4
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh--------------------
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------------------- 281 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------------------- 281 (715)
.|.+|+|++.++..|.-.. .+|. ..||||.|+||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999987775322 1221 1379999999999999999999887
Q ss_pred ---------------CCCeEEeeccchhhhHhhhh--HHHH--------HHHHHHHHhCCCeEEEEcCchhhcCCCCCCc
Q 005066 282 ---------------GVPFFSCSGSEFEEMFVGVG--ARRV--------RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 336 (715)
Q Consensus 282 ---------------~~~fi~is~s~~~~~~vg~~--~~~v--------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 336 (715)
..||+.+.++......+|.. ...+ ..++. ....+|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhCC-------
Confidence 35777776665444443321 0001 11111 1233699999999883
Q ss_pred hHHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC-cccccccCCCCcccccccCCCC-HHHHHHHHHHH
Q 005066 337 QQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPD-VEGRRQIMESH 403 (715)
Q Consensus 337 ~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd-~~eR~~ILk~~ 403 (715)
..+++.|+..|+.- .....+++|+++|..+ .|.++|+. ||+.+|.++.|. .+++.+|++..
T Consensus 140 ----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 33455566655421 1124689999999543 57788887 999889887664 67778887653
Q ss_pred hhhh-------------------------ccCCcc--c---HHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHcCCCccC
Q 005066 404 MSKV-------------------------LKADDV--D---LMIIARGT--PGF-SGADLANLVNIAALKAAMDGAKAVT 450 (715)
Q Consensus 404 l~~~-------------------------~~~~dv--d---l~~la~~t--~G~-sgadI~~lv~~A~~~A~~~~~~~It 450 (715)
+... .....+ + +..++..+ .|. +.+-...+++.|..+|+.+++..|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~ 293 (633)
T TIGR02442 214 LAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVT 293 (633)
T ss_pred HhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 3200 000111 1 12222221 233 3455557888899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 005066 451 MADLEYAKDKIMM 463 (715)
Q Consensus 451 ~edl~~A~~~i~~ 463 (715)
.+||..|+.-++.
T Consensus 294 ~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 294 AEDVREAAELVLP 306 (633)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887774
No 144
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37 E-value=2.5e-11 Score=129.04 Aligned_cols=128 Identities=26% Similarity=0.257 Sum_probs=86.0
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC------------CCcccccccCCCCccc
Q 005066 317 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF------------PESLDKALVRPGRFDR 384 (715)
Q Consensus 317 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~------------p~~LD~aLlRpgRFd~ 384 (715)
|.||||||++.|- -+.-..+|.- |+ ..---+||.+||+ |.-++..|+. |+ .
T Consensus 292 pGVLFIDEvHmLD--------IE~FsFlnrA---lE---se~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHMLD--------IECFSFLNRA---LE---SELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhhh--------HHHHHHHHHH---hh---cccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 6788888887661 1111222222 22 1222367777873 4556666664 55 3
Q ss_pred ccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
+|...+++.++.++|++..+...... .+-.++.|+....--|-+=-.+|+.-|...|.++++..|..+|++.|.+-.
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 67888999999999999998754332 233356677665555555556888889999999999999999999997644
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.36 E-value=2.7e-12 Score=137.93 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh--HhhhhHHH----------HHHHHHHHHhCCCeEEEEcC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGARR----------VRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~--~vg~~~~~----------vr~lF~~A~~~~P~ILfIDE 324 (715)
.++|||.||||||||++++.+|..++.|++.++++..... ++|...-. ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4589999999999999999999999999999998776554 44432111 112233343 3468999999
Q ss_pred chhhcCCCCCCchHHHHHHHHHHHHH-----h----hccccCCCEEEEeecCCCC------------cccccccCCCCcc
Q 005066 325 IDAIGGSRNPKDQQYMKMTLNQLLVE-----L----DGFKQNEGIIVIAATNFPE------------SLDKALVRPGRFD 383 (715)
Q Consensus 325 ID~l~~~r~~~~~~~~~~~l~~LL~~-----L----d~~~~~~~ViVIaaTN~p~------------~LD~aLlRpgRFd 383 (715)
||..- ......++.+|.. + ..+...+.+.||+|+|..+ .|+++++. ||-
T Consensus 143 in~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~ 212 (327)
T TIGR01650 143 YDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWS 212 (327)
T ss_pred hhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--hee
Confidence 99762 2234455556542 1 1123445799999999865 36788886 998
Q ss_pred cccccCCCCHHHHHHHHHHHhh
Q 005066 384 RHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 384 ~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
.++.++.|+.++-.+|+.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhcc
Confidence 7789999999999999987654
No 146
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=3.3e-11 Score=137.27 Aligned_cols=209 Identities=26% Similarity=0.331 Sum_probs=131.0
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-------------------
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------------------- 281 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el------------------- 281 (715)
..|+||.|++.+++.+.-.+ ....+++|.||||||||++++.+++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47999999999877665322 123479999999999999999998633
Q ss_pred ---------CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005066 282 ---------GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 352 (715)
Q Consensus 282 ---------~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld 352 (715)
..||...+++......+|.+...-...+..| ..++|||||++.+. ..++..|+..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 2355555444433333343321122233333 34699999999773 233344444443
Q ss_pred ccc-----------cCCCEEEEeecCCC------C-----------------cccccccCCCCcccccccCCCCHHHH--
Q 005066 353 GFK-----------QNEGIIVIAATNFP------E-----------------SLDKALVRPGRFDRHIVVPNPDVEGR-- 396 (715)
Q Consensus 353 ~~~-----------~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRFd~~I~v~~Pd~~eR-- 396 (715)
... ...++.+|+++|.. + .|...|+. |||.++.++.++.++.
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhc
Confidence 211 13478999999953 1 36666665 9999999987655432
Q ss_pred -----------HHHHHHH------hhhh---ccCCccc----------------HHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005066 397 -----------RQIMESH------MSKV---LKADDVD----------------LMIIARGTPGFSGADLANLVNIAALK 440 (715)
Q Consensus 397 -----------~~ILk~~------l~~~---~~~~dvd----------------l~~la~~t~G~sgadI~~lv~~A~~~ 440 (715)
.++.+.+ ++.. .....+. +..-+....++|.+....+++-|..+
T Consensus 399 ~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 399 TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTI 478 (499)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 2222221 1110 0111111 11112223468999999999999999
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 005066 441 AAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 441 A~~~~~~~It~edl~~A~~ 459 (715)
|..++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999974
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.4e-10 Score=135.92 Aligned_cols=215 Identities=24% Similarity=0.335 Sum_probs=149.2
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
.-+++-|+|.|+.++.+.+++.. +..++-+|+|+||+|||.++.-+|... +..++.++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45678899999776666655442 223478999999999999999999877 55677777
Q ss_pred ccchhh--hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch-HHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFEE--MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~~--~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~-~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+.+.. +|-|+.+.+++.+.+..+...+.||||||||.+.+.....+. ......+...| ..+.+.+|++|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------ARGeL~~IGAT 306 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------ARGELRCIGAT 306 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------hcCCeEEEEec
Confidence 777754 589999999999999999888999999999999877654332 22222333332 24668889888
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-----HHHHHhc-----CCCCCHHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIARG-----TPGFSGADLA 431 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-----l~~la~~-----t~G~sgadI~ 431 (715)
+.-+ .-|+||-| ||. .|.+..|+.++-..||+..-.++.....|. +...+.+ +.-+-|.---
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7443 35899999 996 889999999999999998877765444432 2222222 2223333334
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 432 NLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 432 ~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
.++.+|+.....+.......+.++.
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~ 408 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELER 408 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHH
Confidence 6777777666544323334344433
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=6.8e-11 Score=142.74 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=111.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh---
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkg-vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~--- 296 (715)
+.|+|++++.+.+.+.+...+..- .....|.| +||+||||+|||.+|+++|..+ +..|+.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL----EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 468999999888877765421100 01134665 7999999999999999999998 468899999887543
Q ss_pred ---------HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCC
Q 005066 297 ---------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNE 358 (715)
Q Consensus 297 ---------~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~ 358 (715)
|+|.... ..+....+.+..+||+|||||..- ..+.+-|+..+|.-. .-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------PDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------HHHHHHHHHHhhcceeecCCCcEEecc
Confidence 2222111 123344566777999999998652 233455555554321 124
Q ss_pred CEEEEeecCCCC-----------------------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 359 GIIVIAATNFPE-----------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 359 ~ViVIaaTN~p~-----------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
+.+||+|||... .+.|+|+. |++ +|.|.+.+.++..+|++..+...
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 689999999421 13355555 887 88999999999999999888653
No 149
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1e-10 Score=127.97 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=123.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-------CeEEe-e
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFSC-S 289 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------~fi~i-s 289 (715)
..+..|++|+|++++++.|...+. .++.|..+||+||+|+|||++|+.+|+.+.+ |.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 356789999999999999997765 3567888999999999999999999998854 11100 1
Q ss_pred ---ccc-----------hh---hhH--------hhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHH
Q 005066 290 ---GSE-----------FE---EMF--------VGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYM 340 (715)
Q Consensus 290 ---~s~-----------~~---~~~--------vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~ 340 (715)
|.. +. ..+ ...+...+|.+-+... .....|++|||+|.+.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 110 00 000 0111234444443332 2345799999999882
Q ss_pred HHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHh
Q 005066 341 KMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIAR 420 (715)
Q Consensus 341 ~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~ 420 (715)
....|.||..|+. ...+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++|+....... ..+-.+..++.
T Consensus 155 ~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 3456778888875 34455666667788888888876 87 5899999999999999987432211 11112445555
Q ss_pred cCCCCCHHHHHHHHH
Q 005066 421 GTPGFSGADLANLVN 435 (715)
Q Consensus 421 ~t~G~sgadI~~lv~ 435 (715)
.+.| +++...++++
T Consensus 229 ~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 229 RSKG-SVRKALLLLN 242 (351)
T ss_pred HcCC-CHHHHHHHHh
Confidence 5544 4554445544
No 150
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.26 E-value=1.5e-10 Score=129.94 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=128.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccc-hhhhHhhhh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSE-FEEMFVGVG 301 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~-~~~~~vg~~ 301 (715)
.|+|.+++++.+...+. ...+|||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 47888887666554321 2237999999999999999999997743 555554431 122222311
Q ss_pred -HHHH--HHHHHHHHhC---CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-c-c------cCCCEEEEeecC
Q 005066 302 -ARRV--RDLFSAAKKR---SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-F-K------QNEGIIVIAATN 367 (715)
Q Consensus 302 -~~~v--r~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~-~-~------~~~~ViVIaaTN 367 (715)
.... ..-|...... ...+||+|||+.+. ..+.+.||..|.. . . .-+..++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0111 1223221111 22499999998652 3456667766632 1 1 112245556667
Q ss_pred CCCc---ccccccCCCCcccccccCCCC-HHHHHHHHHHHhhh----hccC---------------Cccc--------HH
Q 005066 368 FPES---LDKALVRPGRFDRHIVVPNPD-VEGRRQIMESHMSK----VLKA---------------DDVD--------LM 416 (715)
Q Consensus 368 ~p~~---LD~aLlRpgRFd~~I~v~~Pd-~~eR~~ILk~~l~~----~~~~---------------~dvd--------l~ 416 (715)
.... ..+++.- ||-..+.+|+|+ .++..+|+...... .... ..+. +.
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~ 233 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIF 233 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHH
Confidence 4322 3347775 998889999997 45667788654221 0000 0011 11
Q ss_pred HHHh---cC---CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccc
Q 005066 417 IIAR---GT---PGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 417 ~la~---~t---~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~ 465 (715)
.|.. .+ ...|++-...+++-|...|...|+..|+.+|+. .+..+++..
T Consensus 234 ~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 234 QLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 2332 12 337889999999999999999999999999999 666666643
No 151
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=7.8e-12 Score=126.08 Aligned_cols=119 Identities=35% Similarity=0.508 Sum_probs=69.6
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh--------------------
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------------------- 281 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------------------- 281 (715)
.|+||+|++.+|+.|.-... |. .++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------GG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------CC-----EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------CC---CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 38999999999999985433 33 489999999999999999999865
Q ss_pred --------CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 005066 282 --------GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG 353 (715)
Q Consensus 282 --------~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~ 353 (715)
..||.....+.-....+|.+....-..+..| ...||||||+..+ ...++..|..-|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef-----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEF-----------DRSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhc-----------CHHHHHHHHHHHHC
Confidence 1233333332222222332221111122222 2369999999866 45667777777653
Q ss_pred c-----------ccCCCEEEEeecCC
Q 005066 354 F-----------KQNEGIIVIAATNF 368 (715)
Q Consensus 354 ~-----------~~~~~ViVIaaTN~ 368 (715)
- ....++++|+|+|.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 1 22346899999993
No 152
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=1.8e-10 Score=131.44 Aligned_cols=212 Identities=21% Similarity=0.217 Sum_probs=134.2
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHh----hh-------------------CCCCCCeEEEEcCCCCChHHH
Q 005066 217 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFT----RL-------------------GGKLPKGVLLVGPPGTGKTML 273 (715)
Q Consensus 217 ~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~----~l-------------------g~~~pkgvLL~GPPGTGKT~L 273 (715)
.+.+..|.|+.|-+.+-+.+..++..+. +-.|. ++ +....|-+||+||||-|||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD-~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWD-PCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhc-HHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 3567889999999998887776665432 11121 11 111224588999999999999
Q ss_pred HHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 274 ARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 274 AralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
|+.+|+.+|+.++.|++|+-... .....++-.+...- ....|.+|+|||||--. .....++..++.
T Consensus 343 AHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------~~~Vdvilslv~ 412 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------RAAVDVILSLVK 412 (877)
T ss_pred HHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------HHHHHHHHHHHH
Confidence 99999999999999999985432 11112222222111 13678899999999321 223344444443
Q ss_pred Hh----hcccc---------C---CCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc
Q 005066 350 EL----DGFKQ---------N---EGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV 413 (715)
Q Consensus 350 ~L----d~~~~---------~---~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv 413 (715)
.- .|-.. . =...||+.||... -|+|+----|-.+|.|++|......+-|+..+.+.....+.
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 11 11100 0 0146888888654 36663211477789999999988888888777665443222
Q ss_pred -cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 414 -DLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 414 -dl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
.+..|+..+. .||++++|.-...+.+..
T Consensus 491 ~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 491 KALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 2445555554 599999999988887643
No 153
>PRK09087 hypothetical protein; Validated
Probab=99.24 E-value=1e-10 Score=120.62 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=111.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ 338 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 338 (715)
.++|+||+|+|||+|+++++...+.. +++..++...+. ..... .+|+|||+|.+. ..+.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~-----~~~~ 104 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGG-----FDET 104 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCC-----CCHH
Confidence 49999999999999999999887655 344334433222 11111 388899999762 1222
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEeecCCCCc---ccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-Cc
Q 005066 339 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPES---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DD 412 (715)
Q Consensus 339 ~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~d 412 (715)
..-.++|.+ ...+..+||+++..|.. ..+.|++ ||. ..+++.+|+.++|.+|++.+++..... ++
T Consensus 105 ~lf~l~n~~-------~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 105 GLFHLINSV-------RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred HHHHHHHHH-------HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 222333332 33455677777665653 3577776 775 577999999999999999999765332 22
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 413 VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 413 vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
--+..|++...| +.+.+..+++.....+...+ +.||...+++++..+
T Consensus 176 ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 176 HVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 235567777663 56666666666555555544 668999998888754
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.7e-10 Score=139.51 Aligned_cols=168 Identities=24% Similarity=0.318 Sum_probs=112.0
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH-
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF- 297 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk-gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~- 297 (715)
++.|+|++.+.+.+.+.+...+..- .....|. .+||+||||||||++|++|+..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL----SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc----cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 4679999999999888776532100 0011233 58999999999999999999987 5689999998875431
Q ss_pred ----hhhh-----HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCC
Q 005066 298 ----VGVG-----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEG 359 (715)
Q Consensus 298 ----vg~~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~-------~~~~ 359 (715)
+|.. ...-..+....+....+||||||++.+. ..+.+.|+..++.- . ...+
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------PDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------HHHHHHHHHHHhhCceecCCceEEeecc
Confidence 1111 0111112223344445899999999762 22345555555421 1 1235
Q ss_pred EEEEeecCCCC-------------------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 360 IIVIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 360 ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
.+||+|||... .+.|+|+. |+|.++.|.+++.+...+|++.++...
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 67899999631 13456665 999999999999999999999988663
No 155
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-11 Score=137.05 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=133.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
....+|+||+|.++...++.+.+.. ..+.+..|||.|.+||||.++|++|-+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3467899999999998887776664 23445689999999999999999997755 7899999999876
Q ss_pred hhHhh-hhHHH------------HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc----
Q 005066 295 EMFVG-VGARR------------VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK---- 355 (715)
Q Consensus 295 ~~~vg-~~~~~------------vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~---- 355 (715)
+.... +-... -..+|+.|. .+.||||||..+. ..+ ...||..|.. |.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgemp--------l~L---QaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMP--------LPL---QAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCC--------HHH---HHHHHHHHhhceEEecCC
Confidence 65321 11112 334444442 3589999998773 223 3444444432 11
Q ss_pred ---cCCCEEEEeecCCCC--c-----ccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc----C-Cccc--
Q 005066 356 ---QNEGIIVIAATNFPE--S-----LDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVD-- 414 (715)
Q Consensus 356 ---~~~~ViVIaaTN~p~--~-----LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~----~-~dvd-- 414 (715)
..-.|-||+|||+.- . +-..|.- |+. ++.+..|..++|.+ +..+++.+... . ..+.
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 123599999999641 1 2222222 443 66777888888765 44445543211 1 1122
Q ss_pred -HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 415 -LMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 415 -l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
+..|.++-.--+.++|+|++..+...+. ....|+.+|+.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 3445555554578999999998877443 33457777776
No 156
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=4.9e-11 Score=136.79 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=129.1
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH-----------hCCCeEEe
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE-----------AGVPFFSC 288 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e-----------l~~~fi~i 288 (715)
..+|++++|.+...+.+++.+..+.. .+..|||+|++||||+++|++|-.. .+.||+.+
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35799999999998888887764322 2347999999999999999999876 46899999
Q ss_pred eccchhhhHh-----hh------hH--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-
Q 005066 289 SGSEFEEMFV-----GV------GA--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF- 354 (715)
Q Consensus 289 s~s~~~~~~v-----g~------~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~- 354 (715)
+|+.+.+... |. ++ ..-..+|+.| ..+.||||||+.+. ......|+..++.-
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP-----------LPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC-----------HHHHHHHHhhhhcCe
Confidence 9998754321 10 00 0112344444 24699999999884 22234444444321
Q ss_pred -c-------cCCCEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc--CCcc
Q 005066 355 -K-------QNEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK--ADDV 413 (715)
Q Consensus 355 -~-------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~~~--~~dv 413 (715)
. ..-++.||++||..- . .+...|+|.. .+.+..|...+|.+ ++++++++... ...+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 122468898887541 1 1112233321 45677788777754 56666654211 1112
Q ss_pred cH----------HHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 414 DL----------MIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 414 dl----------~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
+- ..|..+..--+.++|+|++++++..+.......|+.+++.
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 11 3455555556789999999998876543333567777764
No 157
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.8e-10 Score=126.69 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=114.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe-------E----
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------F---- 286 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f-------i---- 286 (715)
..+.+|++|+|++.+++.|.+.+. .++.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 457789999999999999987766 356788999999999999999999999873210 0
Q ss_pred --E-e-ecc-----------chh-------hhH----hhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCc
Q 005066 287 --S-C-SGS-----------EFE-------EMF----VGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKD 336 (715)
Q Consensus 287 --~-i-s~s-----------~~~-------~~~----vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~ 336 (715)
. . .|. ++. ++- .......+|++-..+. ...+-|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0 0 010 000 000 0012344565555442 3567899999999872
Q ss_pred hHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 337 QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 337 ~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
....|.||..++. ...+.++|.+|+.++.+.+.+++ |+. .|.|++|+.++..+++....
T Consensus 155 ----~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ----ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ----HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc
Confidence 3456788888874 44567788889989888888876 774 88999999999999888764
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=1.3e-10 Score=140.81 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=126.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM---- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~---- 296 (715)
..|+|++++.+.+.+.+...+..- ....++...+||+||||||||++|++||..+ +.+|+.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 569999999998888776532100 0001223358999999999999999999987 578999999887543
Q ss_pred -HhhhhH-----HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCCEE
Q 005066 297 -FVGVGA-----RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEGII 361 (715)
Q Consensus 297 -~vg~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~-------~~~~Vi 361 (715)
.+|... .....+....+....+|||||||+.+- ..+.+.|+..|+.- . .-.+.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------HHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 112111 011233344455556899999999762 33445555555421 1 124678
Q ss_pred EEeecCCCCc-------------------------ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-------
Q 005066 362 VIAATNFPES-------------------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK------- 409 (715)
Q Consensus 362 VIaaTN~p~~-------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~------- 409 (715)
||+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+.....
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999997321 2345554 99999999999999999999988764211
Q ss_pred CCccc---HHHHHhcC--CCCCHHHHHHHHHHHH
Q 005066 410 ADDVD---LMIIARGT--PGFSGADLANLVNIAA 438 (715)
Q Consensus 410 ~~dvd---l~~la~~t--~G~sgadI~~lv~~A~ 438 (715)
.-.++ +..|+... +.+..+.|+++++...
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 11122 33355442 2455677777766544
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=1.9e-10 Score=139.07 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=114.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh---
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkg-vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~--- 296 (715)
+.|+|++++++.+...+...+..- .....|.+ +||+||||||||++|++||..+ +.+++.++.+++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL----KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc----cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 458999999988887776421100 01123444 7999999999999999999988 478999998887542
Q ss_pred --HhhhhH-----HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCE
Q 005066 297 --FVGVGA-----RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGI 360 (715)
Q Consensus 297 --~vg~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~V 360 (715)
+.|... .....+....+.+..+||+|||+|.+. ..+.+.|+..|+.-. ...+.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC-----------HHHHHHHHHHhccCceecCCCcEEecCce
Confidence 222111 112345555666666999999999772 335566666666321 12578
Q ss_pred EEEeecCCCCc-------------------------------------ccccccCCCCcccccccCCCCHHHHHHHHHHH
Q 005066 361 IVIAATNFPES-------------------------------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 361 iVIaaTN~p~~-------------------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 403 (715)
++|+|||.... +.|.|+. |+|.+|.|.+.+.++..+|++..
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 99999995321 1234454 89989999999999999999888
Q ss_pred hhhh
Q 005066 404 MSKV 407 (715)
Q Consensus 404 l~~~ 407 (715)
+.+.
T Consensus 732 l~~l 735 (821)
T CHL00095 732 LKNL 735 (821)
T ss_pred HHHH
Confidence 8653
No 160
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.5e-11 Score=127.44 Aligned_cols=96 Identities=33% Similarity=0.542 Sum_probs=71.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-HhhhhHHHH-HHHHHHH----HhCCCeEEEEcCchhhcCCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----KKRSPCIIFIDEIDAIGGSR 332 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~-~vg~~~~~v-r~lF~~A----~~~~P~ILfIDEID~l~~~r 332 (715)
+|||.||.|||||+||+.+|+.+++||-..++..+.+. |+|+...++ ..+...| .+...+||||||||.+..+.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 69999999999999999999999999999999999875 999876544 4444443 23345799999999998765
Q ss_pred C-CCc--hHHHHHHHHHHHHHhhcc
Q 005066 333 N-PKD--QQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 333 ~-~~~--~~~~~~~l~~LL~~Ld~~ 354 (715)
. ++. +-.-..+...||..++|-
T Consensus 179 eN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCcccccCchHHHHHHHHHHcCc
Confidence 2 221 111234556777777763
No 161
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.23 E-value=1e-10 Score=127.05 Aligned_cols=132 Identities=34% Similarity=0.420 Sum_probs=87.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHH---HHHHH-hCCC------eEEEEcCchh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDL---FSAAK-KRSP------CIIFIDEIDA 327 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~l---F~~A~-~~~P------~ILfIDEID~ 327 (715)
+++||.||||||||++|+.+|..++.+|+.+.|.......-..+....... ...-+ ...| +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 379999999999999999999999999999999865443111111111111 10000 0111 4999999996
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhc----------cccCCCEEEEeecC-----CCCcccccccCCCCcccccccCCCC
Q 005066 328 IGGSRNPKDQQYMKMTLNQLLVELDG----------FKQNEGIIVIAATN-----FPESLDKALVRPGRFDRHIVVPNPD 392 (715)
Q Consensus 328 l~~~r~~~~~~~~~~~l~~LL~~Ld~----------~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRFd~~I~v~~Pd 392 (715)
.. ..+.+.|+..|+. +.-...++||+|+| ....|++++++ ||...+.++.|+
T Consensus 124 a~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~ 190 (329)
T COG0714 124 AP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPD 190 (329)
T ss_pred CC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCC
Confidence 63 2334445544443 34457789999999 44568899998 998889999995
Q ss_pred HHHHHHHHHH
Q 005066 393 VEGRRQIMES 402 (715)
Q Consensus 393 ~~eR~~ILk~ 402 (715)
.++-..++..
T Consensus 191 ~~~e~~~i~~ 200 (329)
T COG0714 191 SEEEERIILA 200 (329)
T ss_pred chHHHHHHHH
Confidence 5444443333
No 162
>PHA02244 ATPase-like protein
Probab=99.22 E-value=2.9e-10 Score=123.69 Aligned_cols=130 Identities=26% Similarity=0.284 Sum_probs=82.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhh---hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVG---VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg---~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~ 334 (715)
.+|||+||||||||++|+++|..++.||+.++...-.....| ....-...-|-.+. ..+++|||||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~----- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASI----- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCC-----
Confidence 479999999999999999999999999999984311000111 00010111222222 345799999999763
Q ss_pred CchHHHHHHHHHHHHH-----hh-ccccCCCEEEEeecCCC-----------CcccccccCCCCcccccccCCCCHHHHH
Q 005066 335 KDQQYMKMTLNQLLVE-----LD-GFKQNEGIIVIAATNFP-----------ESLDKALVRPGRFDRHIVVPNPDVEGRR 397 (715)
Q Consensus 335 ~~~~~~~~~l~~LL~~-----Ld-~~~~~~~ViVIaaTN~p-----------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 397 (715)
......++.++.. .+ .+....++.+|+|+|.+ ..|+++++. ||- .|+++.|+. ...
T Consensus 194 ---p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~-~E~ 266 (383)
T PHA02244 194 ---PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK-IEH 266 (383)
T ss_pred ---HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH-HHH
Confidence 2233344444421 11 12234678999999973 467899987 995 789999983 333
Q ss_pred HHH
Q 005066 398 QIM 400 (715)
Q Consensus 398 ~IL 400 (715)
.|.
T Consensus 267 ~i~ 269 (383)
T PHA02244 267 LIS 269 (383)
T ss_pred HHh
Confidence 444
No 163
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-11 Score=135.64 Aligned_cols=210 Identities=27% Similarity=0.367 Sum_probs=128.1
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-----------------
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----------------- 282 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~----------------- 282 (715)
...|.||+|++.+|+.|..... |+ .|+||+||||||||++|+.+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------Gg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------GG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------cC---CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4589999999999999985433 44 3899999999999999999976441
Q ss_pred ------------CCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 283 ------------VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 283 ------------~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
.||.....+.-....+|.+...--.-. .....+||||||+-.+ ..++|+.|-+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeI---sLAH~GVLFLDElpef-----------~~~iLe~LR~P 306 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEI---SLAHNGVLFLDELPEF-----------KRSILEALREP 306 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCce---eeecCCEEEeeccchh-----------hHHHHHHHhCc
Confidence 122222211111122222200000000 1122369999999755 45677777766
Q ss_pred hhcc-----------ccCCCEEEEeecCCCC-----------------------cccccccCCCCcccccccCCCCHHHH
Q 005066 351 LDGF-----------KQNEGIIVIAATNFPE-----------------------SLDKALVRPGRFDRHIVVPNPDVEGR 396 (715)
Q Consensus 351 Ld~~-----------~~~~~ViVIaaTN~p~-----------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR 396 (715)
|+.- ....++.+|++||..- .|...|+. |||..++++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 6531 1233588899999432 23344444 9999999988774333
Q ss_pred --------------HHHHHHHhhh----hcc--CC----------------cccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005066 397 --------------RQIMESHMSK----VLK--AD----------------DVDLMIIARGTPGFSGADLANLVNIAALK 440 (715)
Q Consensus 397 --------------~~ILk~~l~~----~~~--~~----------------dvdl~~la~~t~G~sgadI~~lv~~A~~~ 440 (715)
..+++.+-.. ... +. +.++...+-..-++|.+....+++-|..+
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 1222221110 000 11 11222233344568888888999999999
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 005066 441 AAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 441 A~~~~~~~It~edl~~A~~ 459 (715)
|..++...|...|+.+|+.
T Consensus 465 ADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 465 ADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hcccCcchhhHHHHHHHHh
Confidence 9888988999999988875
No 164
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.3e-10 Score=123.52 Aligned_cols=153 Identities=15% Similarity=0.281 Sum_probs=110.6
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------eEEeeccch
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP--------FFSCSGSEF 293 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~--------fi~is~s~~ 293 (715)
+|+||+|++.+++.|...+. .++.|..+||+||+|+|||++|+++|..+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 69999999999999887664 35677789999999999999999999987332 2222211
Q ss_pred hhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 294 EEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
... ..+...++++...+. .....|++||++|.+. ....|.||..|+. +.+++++|.+|+.+
T Consensus 69 ~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe--pp~~t~~il~~~~~ 133 (313)
T PRK05564 69 NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE--PPKGVFIILLCENL 133 (313)
T ss_pred cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCCh
Confidence 000 112344666665442 2344699999999872 3456788888884 55677777777888
Q ss_pred CcccccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005066 370 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 370 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
+.+.|.+++ |. .++.|++|+.++....++..+.
T Consensus 134 ~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 134 EQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred HhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc
Confidence 999899887 66 3889999999998887766543
No 165
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.20 E-value=1.1e-10 Score=133.84 Aligned_cols=212 Identities=23% Similarity=0.276 Sum_probs=129.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~ 296 (715)
..+|++++|.++..+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 46799999999998888877765322 23489999999999999999998654 679999999887543
Q ss_pred Hh-----hhh------H--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc------
Q 005066 297 FV-----GVG------A--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK------ 355 (715)
Q Consensus 297 ~v-----g~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~------ 355 (715)
.. |.. + ..-..+|+.+ ..+.||||||+.+. ... ...|+..++. +.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp--------~~~---Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP--------LPL---QTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC--------HHH---HHHHHHHHhcCcEEecCCCc
Confidence 21 100 0 0112344443 24699999999884 222 3344444432 11
Q ss_pred -cCCCEEEEeecCCCC--cccccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhhccCC--ccc---HHH---
Q 005066 356 -QNEGIIVIAATNFPE--SLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKVLKAD--DVD---LMI--- 417 (715)
Q Consensus 356 -~~~~ViVIaaTN~p~--~LD~aLlRpg---RFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~~~--dvd---l~~--- 417 (715)
..-++.||++||..- .+....+|+. |+. .+.+..|+..+|.+ ++.+++.+..... .++ +..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 112467888887542 1222222211 332 45667777777654 5566665432111 122 222
Q ss_pred ----HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 418 ----IARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 418 ----la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
|..+..--+-++|++++.+++..+.......|+.+|+..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 555665567789999999887765322335788887654
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=5e-11 Score=109.15 Aligned_cols=126 Identities=37% Similarity=0.483 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCC---eEEeeccchhhhH--------------hhhhHHHHHHHHHHHHhCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEFEEMF--------------VGVGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~---fi~is~s~~~~~~--------------vg~~~~~vr~lF~~A~~~~P~I 319 (715)
+..++|+||||||||++++.++..+..+ ++.++++...... ........+.++..++...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 8888887654321 1234566778888888877899
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHH--HHHhhccccCCCEEEEeecCC-CCcccccccCCCCcccccccCCC
Q 005066 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQL--LVELDGFKQNEGIIVIAATNF-PESLDKALVRPGRFDRHIVVPNP 391 (715)
Q Consensus 320 LfIDEID~l~~~r~~~~~~~~~~~l~~L--L~~Ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRFd~~I~v~~P 391 (715)
|||||++.+..... ....... ...........+..+|+++|. ....+..+.+ |++.++.++.+
T Consensus 82 iiiDei~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ-------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH-------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998854221 0000000 001111233466788888886 2333334443 88877777654
No 167
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.18 E-value=2.1e-10 Score=131.74 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=131.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhC--CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe----eccchhhhHh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLG--GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC----SGSEFEEMFV 298 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg--~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i----s~s~~~~~~v 298 (715)
+|.|.+.+|..+.-.+ +........-| ..-..+|||+|+||||||++|++++.......+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5788888876664222 11110000001 12223799999999999999999999875432221 2222211000
Q ss_pred hh---hHHHH-HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEE
Q 005066 299 GV---GARRV-RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVI 363 (715)
Q Consensus 299 g~---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVI 363 (715)
.. +...+ ...+. ....++++|||+|.+. ......|+..|+.- ..+..+.||
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 00 00000 00111 1234699999999873 12233344444321 123568999
Q ss_pred eecCCCC-------------cccccccCCCCccccccc-CCCCHHHHHHHHHHHhhhhc---------------------
Q 005066 364 AATNFPE-------------SLDKALVRPGRFDRHIVV-PNPDVEGRRQIMESHMSKVL--------------------- 408 (715)
Q Consensus 364 aaTN~p~-------------~LD~aLlRpgRFd~~I~v-~~Pd~~eR~~ILk~~l~~~~--------------------- 408 (715)
+|+|..+ .|++++++ |||..+.+ +.|+.+...+|+++.+....
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRK 425 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHH
Confidence 9999653 48899998 99986644 88999999998887543210
Q ss_pred --------cCCccc---HHHH------Hhc---------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 409 --------KADDVD---LMII------ARG---------TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 409 --------~~~dvd---l~~l------a~~---------t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
..+.++ ...| .+. ..+.|++.+..+++-|..+|..+.+..|+.+|+..|++-+
T Consensus 426 yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 426 YIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 000111 0001 111 2356889999999999999999999999999999998754
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.18 E-value=3.5e-10 Score=132.06 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=66.9
Q ss_pred CEEEEeecCCC--CcccccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhh---hhccCCcccH---HHHH---hc
Q 005066 359 GIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMS---KVLKADDVDL---MIIA---RG 421 (715)
Q Consensus 359 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~~ILk~~l~---~~~~~~dvdl---~~la---~~ 421 (715)
++.||+++|.. ..+||.|+. ||+ ..+.|+. | +.+.+.++++...+ +....+.++- ..|. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999965 568999987 898 5555532 3 45566555554433 2211223332 2222 11
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 422 ------TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 422 ------t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
.-..+.++|.+++++|...|..+++..|+.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 1124579999999999888888888999999999997754
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-10 Score=135.57 Aligned_cols=164 Identities=26% Similarity=0.363 Sum_probs=115.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCC---CCC-eEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccchhhh
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK---LPK-GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEM 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~---~pk-gvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~~~~ 296 (715)
.-|+|++++...+...|.. .+.|.. .|. .+||.||+|+|||-||++||..+. ..++.++.|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrr-------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR-------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3489999998888877764 222322 233 578899999999999999999996 89999999999875
Q ss_pred H-----hhhhHHHH-----HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------C
Q 005066 297 F-----VGVGARRV-----RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------N 357 (715)
Q Consensus 297 ~-----vg~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~---------~ 357 (715)
+ +|.....+ ..+-+..+.+..|||++|||+.- ...++|-||+.||.-.- -
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 2 22222211 23344456666799999999865 35577888888874221 1
Q ss_pred CCEEEEeecCCCC----------------------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 358 EGIIVIAATNFPE----------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 358 ~~ViVIaaTN~p~----------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
.+.+||+|||--. ...|.|+. |+|.+|.|.+.+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 3589999999321 12344454 888888888888888888888777643
No 170
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.17 E-value=2.8e-10 Score=132.49 Aligned_cols=190 Identities=24% Similarity=0.289 Sum_probs=124.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccchhhhHhhhhHHHHHHHHHH---------HHhCCCeEEEEcCchh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVGARRVRDLFSA---------AKKRSPCIIFIDEIDA 327 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~~~~~vg~~~~~vr~lF~~---------A~~~~P~ILfIDEID~ 327 (715)
||||.|+||||||++|++++..++ .||+.+..+...+..+|.. .+...+.. .......+||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 799999999999999999999875 4798888644444333321 11110100 0012236999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC---cccccccCCCCcccccccC-CCC
Q 005066 328 IGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE---SLDKALVRPGRFDRHIVVP-NPD 392 (715)
Q Consensus 328 l~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~v~-~Pd 392 (715)
+. ..+.+.|+..|+.- .....+.||+++|..+ .|.++|+. ||+.+|.+. .|+
T Consensus 96 l~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 LD-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred CC-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 83 33445555555421 1124689999999775 68888887 999888764 567
Q ss_pred HHHHHHHHHHHhhhhc-------------------cCCcc-----cHHHHHhc--CCCCC-HHHHHHHHHHHHHHHHHcC
Q 005066 393 VEGRRQIMESHMSKVL-------------------KADDV-----DLMIIARG--TPGFS-GADLANLVNIAALKAAMDG 445 (715)
Q Consensus 393 ~~eR~~ILk~~l~~~~-------------------~~~dv-----dl~~la~~--t~G~s-gadI~~lv~~A~~~A~~~~ 445 (715)
.++|.+|++.++.... ....| .+..|+.. ..|.+ .+.-..+++.|...|+.++
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 8889999987652110 00111 11122221 12333 3444577888999999999
Q ss_pred CCccCHHHHHHHHHHHhc
Q 005066 446 AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 ~~~It~edl~~A~~~i~~ 463 (715)
+..|+.+|+..|+.-++.
T Consensus 243 r~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 243 RTEVTEEDLKLAVELVLL 260 (589)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999887763
No 171
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.16 E-value=2.2e-10 Score=131.56 Aligned_cols=194 Identities=22% Similarity=0.238 Sum_probs=122.6
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v 298 (715)
.+.+++|.+...+.+.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67899999999888888777533 234589999999999999999998864 67999999998754321
Q ss_pred -----hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc-------cC
Q 005066 299 -----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK-------QN 357 (715)
Q Consensus 299 -----g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~-------~~ 357 (715)
|... ......|..+ ..+.|||||||.+. ......|+..++. +. ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 1100 0011234333 35689999999884 2223344444432 11 12
Q ss_pred CCEEEEeecCCCC-------cccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc-----CCccc---HHHH
Q 005066 358 EGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVD---LMII 418 (715)
Q Consensus 358 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~-----~~dvd---l~~l 418 (715)
.++.||++||..- .+.+.|.. |+. .+.|..|+..+|.+ ++++++++... ...++ +..|
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3578899988642 12222322 332 45667777777654 55556554321 11233 4456
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
..+..--+.++|+++++.|+..+.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 666666688999999999888764
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.16 E-value=1.4e-09 Score=110.73 Aligned_cols=164 Identities=22% Similarity=0.334 Sum_probs=118.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
.++.+++|+|+|.+|+.|.+-- ++|. .+.+-++|||+|..|||||+|+||+-++. +..++.|+..++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT------~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNT------EQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHH------HHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 4589999999999999887533 3332 35667799999999999999999998887 67899998887654
Q ss_pred hHhhhhHHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEeecCCCCcc
Q 005066 296 MFVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPESL 372 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~~~~~ViVIaaTN~p~~L 372 (715)
+-.+++..+.. ..-|||+|++- + +.+ +.. ...|-..|||- ....+|+|.+|+|+-..|
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~g-d~~---yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLS-F-----EEG-DDA---YKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCC-C-----CCC-chH---HHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 34455555443 35799999983 1 111 112 23333445553 235689999999987765
Q ss_pred cccc--------------------cCCCCcccccccCCCCHHHHHHHHHHHhhhhcc
Q 005066 373 DKAL--------------------VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK 409 (715)
Q Consensus 373 D~aL--------------------lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~ 409 (715)
+..+ --+.||...+.|++++.++-..|+.++++....
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC
Confidence 5222 113599999999999999999999999987644
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=3.5e-10 Score=126.03 Aligned_cols=141 Identities=26% Similarity=0.395 Sum_probs=86.6
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------eEEeecc----
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSCSGS---- 291 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------fi~is~s---- 291 (715)
++++.+.++..+.+. ..+. ..++++|+||||||||++|+.+|..+... ++.++.+
T Consensus 174 l~d~~i~e~~le~l~---~~L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETIL---KRLT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHH---HHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 566666665544443 3222 24589999999999999999999988431 2333222
Q ss_pred chhhhH--hhhhH----HHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh------------
Q 005066 292 EFEEMF--VGVGA----RRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL------------ 351 (715)
Q Consensus 292 ~~~~~~--vg~~~----~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~L------------ 351 (715)
++...+ .+.+- ..+.++...|+. ..|++|||||||.... .+++.+++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhcccccccccccee
Confidence 222222 11111 123344456654 3579999999986532 12222222222
Q ss_pred --------hccccCCCEEEEeecCCCC----cccccccCCCCcccccccCC
Q 005066 352 --------DGFKQNEGIIVIAATNFPE----SLDKALVRPGRFDRHIVVPN 390 (715)
Q Consensus 352 --------d~~~~~~~ViVIaaTN~p~----~LD~aLlRpgRFd~~I~v~~ 390 (715)
+.|....++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355667899999999887 79999999 995 455643
No 174
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=3.2e-10 Score=123.15 Aligned_cols=193 Identities=21% Similarity=0.267 Sum_probs=118.2
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v 298 (715)
.|++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++-... +.||+.++|..+.+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 47889999998888877776532 234479999999999999999997654 57999999998743211
Q ss_pred -----hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------C
Q 005066 299 -----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------N 357 (715)
Q Consensus 299 -----g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~ 357 (715)
|... ......|.. ...+.|||||||.+. ...+ ..|+..++. +.. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~--------~~~Q---~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP--------MLVQ---EKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC--------HHHH---HHHHHHHhcCcEEeCCCCceee
Confidence 1100 001123333 235699999999884 2233 333333332 111 1
Q ss_pred CCEEEEeecCCC-------CcccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhc----cC--Cccc---HHH
Q 005066 358 EGIIVIAATNFP-------ESLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVL----KA--DDVD---LMI 417 (715)
Q Consensus 358 ~~ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~----~~--~dvd---l~~ 417 (715)
.++.||++|+.. ..+.+.|.. ||. .+.|..|+..+|.+ ++++++.... .. ..++ +..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 257888888753 123344443 553 34566677766644 5666654331 11 1233 344
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 418 IARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 418 la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|..+..--+.++|+++++.+...+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhc
Confidence 556665557788888888876643
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=7.5e-10 Score=110.49 Aligned_cols=129 Identities=22% Similarity=0.333 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------------------------eEEeeccchhhhHhhhhHHHHHHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDLF 309 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------------------fi~is~s~~~~~~vg~~~~~vr~lF 309 (715)
.+.|..+||+||||+|||++|+.++..+... +..+.... . ..+...++.+.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHH
Confidence 4667789999999999999999999987432 12221110 0 11234566666
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccc
Q 005066 310 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 385 (715)
Q Consensus 310 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 385 (715)
+.+.. ....|++|||+|.+. ....+.|+..|+. .....++|.+||.+..+.+++.+ |+. .
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~-~ 149 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ-V 149 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE-E
Confidence 65533 345799999999883 2345678877775 33456666677778899999987 764 8
Q ss_pred cccCCCCHHHHHHHHHHH
Q 005066 386 IVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 386 I~v~~Pd~~eR~~ILk~~ 403 (715)
+.+++|+.++..++++.+
T Consensus 150 ~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 999999999998888776
No 176
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.14 E-value=5e-10 Score=125.22 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=131.6
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~ 296 (715)
...+.+++|...+.+++++.+..+...+ -.|||+|++||||.++|++|-... +.||+.+||..+...
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 3468899999999999999888765443 379999999999999999997755 679999999887654
Q ss_pred Hhhh-----h-------HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc------
Q 005066 297 FVGV-----G-------ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------ 356 (715)
Q Consensus 297 ~vg~-----~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~------ 356 (715)
.+.. . ..+-...|+.| ..+.||||||..+. ......||..|.. |..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCcc
Confidence 3211 0 01112234443 34699999998773 2334455555542 211
Q ss_pred -CCCEEEEeecCCC--Ccc-----cccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc-----CCcccHHHHH
Q 005066 357 -NEGIIVIAATNFP--ESL-----DKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVDLMIIA 419 (715)
Q Consensus 357 -~~~ViVIaaTN~p--~~L-----D~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~-----~~dvdl~~la 419 (715)
.-+|-||++||.. +.+ -+.|.. |+. ++.+..|...+|.+ ++++++++... ...++-..+.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 2258899999964 112 222222 443 67888899888876 66666655322 2334444444
Q ss_pred h---cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 420 R---GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 420 ~---~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
. +..--+.++|+|++..++..+ ....|+.+|+.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 3 333335566667776665544 45667776664
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=2.8e-09 Score=111.64 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=115.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCC-CeE--Ee-ec----cchhhh---Hhhhh------HH---HHHHHH-HHHHhCCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGV-PFF--SC-SG----SEFEEM---FVGVG------AR---RVRDLF-SAAKKRSP 317 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~-~fi--~i-s~----s~~~~~---~vg~~------~~---~vr~lF-~~A~~~~P 317 (715)
.++|+||+|+|||++++.+++.+.. .+. .+ ++ .++... ..|.. .. .+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 222 11 11 111111 11111 01 122212 22335667
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC---ccc----ccccCCCCcccccccCC
Q 005066 318 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE---SLD----KALVRPGRFDRHIVVPN 390 (715)
Q Consensus 318 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~---~LD----~aLlRpgRFd~~I~v~~ 390 (715)
.+|+|||+|.+.. .....+..|..... .....+.|+.+ ..++ .+. ..+.+ |+...+++++
T Consensus 125 ~vliiDe~~~l~~--------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTP--------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCH--------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 8999999997731 11222222221111 11222333332 2232 221 12333 6777889999
Q ss_pred CCHHHHHHHHHHHhhhhccC-----CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 391 PDVEGRRQIMESHMSKVLKA-----DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 391 Pd~~eR~~ILk~~l~~~~~~-----~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
.+.++..+++...+...... .+-.+..|.+.+.|. ++.|..+|+.+...|..++.+.|+.++++.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 99999999999988654221 122356688888886 56699999999999999999999999999998764
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=8.1e-10 Score=128.68 Aligned_cols=253 Identities=12% Similarity=0.131 Sum_probs=141.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE-eec---cch
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS-CSG---SEF 293 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~-is~---s~~ 293 (715)
..+.+++||+|+++..++++.++..... +....+.++|+||||||||++++.+|++++..++. .+. ...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 4577899999999998888877664221 22333459999999999999999999999866533 111 100
Q ss_pred hhhH------------hhhhHHHHHHHHHHHHh----------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH-H
Q 005066 294 EEMF------------VGVGARRVRDLFSAAKK----------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV-E 350 (715)
Q Consensus 294 ~~~~------------vg~~~~~vr~lF~~A~~----------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~-~ 350 (715)
...| .......++.++..+.. ....|||||||+.+... ....+..+|. .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRWK 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHHH
Confidence 0000 01123344455554431 24579999999987532 1123444444 2
Q ss_pred hhccccCCCEEEEeecC-CCC--------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--CCc-
Q 005066 351 LDGFKQNEGIIVIAATN-FPE--------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--ADD- 412 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~--~~d- 412 (715)
.. ....+.+|++++ .+. .|.++++...|.. +|.|++.+.....+.|+..+..... ..+
T Consensus 223 ~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 223 YV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred hh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 21 223344444333 121 1335666423443 7899999999988888888765311 111
Q ss_pred -----ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------cCCCccCHHHHHHHHHHHhccccccc---cccchhhh
Q 005066 413 -----VDLMIIARGTPGFSGADLANLVNIAALKAAM-------DGAKAVTMADLEYAKDKIMMGSERKS---AVISDESR 477 (715)
Q Consensus 413 -----vdl~~la~~t~G~sgadI~~lv~~A~~~A~~-------~~~~~It~edl~~A~~~i~~g~~~~~---~~~s~~~~ 477 (715)
-.+..|+... .+||+.+++.-...+.+ .+...++..|+..+..+...-..... ..++..+.
T Consensus 299 ~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~ 374 (637)
T TIGR00602 299 KVPKKTSVELLCQGC----SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDV 374 (637)
T ss_pred ccCCHHHHHHHHHhC----CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccc
Confidence 2345566644 45999888755444332 23345666666665443311000000 01122233
Q ss_pred hhhhHHHhhhHHHHhh
Q 005066 478 KLTAFHEGGHALVAVH 493 (715)
Q Consensus 478 ~~~A~hEaGhAlva~~ 493 (715)
-...+|-.|..|-.-+
T Consensus 375 sl~lfhalgkily~Kr 390 (637)
T TIGR00602 375 SLFLFRALGKILYCKR 390 (637)
T ss_pred hhHHHHHhChhhcccc
Confidence 4566777777765443
No 179
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.14 E-value=2.1e-10 Score=132.50 Aligned_cols=207 Identities=20% Similarity=0.264 Sum_probs=126.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346899999999998888877765432 24479999999999999999998875 67999999988754
Q ss_pred hHhhh-----hH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-----
Q 005066 296 MFVGV-----GA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ----- 356 (715)
Q Consensus 296 ~~vg~-----~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~----- 356 (715)
..... .. ......|.. ...++|||||||.+. ......|+..++. +..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCc
Confidence 32110 00 000111222 235799999999884 1223444444432 111
Q ss_pred --CCCEEEEeecCCCC-------cccccccCCCCcccccccCCCCHHHH----HHHHHHHhhhhcc----CCccc---HH
Q 005066 357 --NEGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGR----RQIMESHMSKVLK----ADDVD---LM 416 (715)
Q Consensus 357 --~~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR----~~ILk~~l~~~~~----~~dvd---l~ 416 (715)
..++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..|+++++.+... ...++ +.
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 12478888887541 12222222 332 344555555544 4566777654321 12233 34
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 417 IIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 417 ~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
.|..+...-+.++|+++++.|...+ ....|+.+|+.
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 4666665567889999998877654 34678888864
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.13 E-value=5.9e-10 Score=121.26 Aligned_cols=189 Identities=21% Similarity=0.275 Sum_probs=112.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh----
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV---- 298 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v---- 298 (715)
|+|.+...+.+.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777777776666532 234479999999999999999997654 57999999987644321
Q ss_pred -hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc-------cCCCEE
Q 005066 299 -GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK-------QNEGII 361 (715)
Q Consensus 299 -g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~-------~~~~Vi 361 (715)
|... .....+|..+ ..++|||||||.+. ... ...|+..++. +. ...++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~--------~~~---Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATAS--------LLV---QEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCC--------HHH---HHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0011223333 35799999999883 222 3344444432 11 124578
Q ss_pred EEeecCCCC-------cccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhc----cC--Cccc---HHHHHhc
Q 005066 362 VIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVL----KA--DDVD---LMIIARG 421 (715)
Q Consensus 362 VIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~----~~--~dvd---l~~la~~ 421 (715)
||++||..- .+.+.|.. ||. .+.|..|...+|.+ ++++++.... .. ..++ +..|..+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 899987531 23344443 553 34566666666644 5556554321 11 1233 3445666
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005066 422 TPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 422 t~G~sgadI~~lv~~A~~~A 441 (715)
..--+.++|++++..++..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 65557788888888776654
No 181
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.13 E-value=5.3e-10 Score=127.19 Aligned_cols=209 Identities=28% Similarity=0.314 Sum_probs=127.4
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC------------------
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG------------------ 282 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~------------------ 282 (715)
..|.++.|+..+++.+.- ......+++|+||||+|||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478899998877665431 122234799999999999999999987552
Q ss_pred ----------CCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005066 283 ----------VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 352 (715)
Q Consensus 283 ----------~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld 352 (715)
.||.....+.-....+|.+...-...+..|. ..+|||||++.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHH
Confidence 1222221111111223333222233444443 3599999998762 234445554443
Q ss_pred cc-----------ccCCCEEEEeecCCCC---------------------cccccccCCCCcccccccCCCCHHH-----
Q 005066 353 GF-----------KQNEGIIVIAATNFPE---------------------SLDKALVRPGRFDRHIVVPNPDVEG----- 395 (715)
Q Consensus 353 ~~-----------~~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRFd~~I~v~~Pd~~e----- 395 (715)
.- ....++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 21 1235689999999653 35567775 999999999885321
Q ss_pred -----HHHHHHHHh-------hh-hccCCccc----------------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005066 396 -----RRQIMESHM-------SK-VLKADDVD----------------LMIIARGTPGFSGADLANLVNIAALKAAMDGA 446 (715)
Q Consensus 396 -----R~~ILk~~l-------~~-~~~~~dvd----------------l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 446 (715)
...|-+... .. ......+. +..-+....|+|.+....+++-|..+|..+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 111221111 00 00011111 00112234578999999999999999999999
Q ss_pred CccCHHHHHHHHH
Q 005066 447 KAVTMADLEYAKD 459 (715)
Q Consensus 447 ~~It~edl~~A~~ 459 (715)
+.|+.+|+.+|+.
T Consensus 478 ~~V~~~hv~eAl~ 490 (506)
T PRK09862 478 DIITRQHLQEAVS 490 (506)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999976
No 182
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.12 E-value=3.8e-10 Score=124.87 Aligned_cols=200 Identities=23% Similarity=0.275 Sum_probs=130.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
+....+..|+|.+.+...+.+.|+..... +..|||.|.+||||..+||+|-... +.||+.+||+.+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 34678899999999999999888864433 3389999999999999999997755 7899999999887
Q ss_pred hhHhh-hhHHHHHHHHHHHHh--------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------
Q 005066 295 EMFVG-VGARRVRDLFSAAKK--------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------- 356 (715)
Q Consensus 295 ~~~vg-~~~~~vr~lF~~A~~--------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~------- 356 (715)
+.... +-....+..|.-|.. ...+.||+|||..+.- .....||..|.. |..
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-----------~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-----------HHHHHHHHHHhhcceeecCCCcee
Confidence 65332 222334445544422 1246999999987732 222334444321 111
Q ss_pred CCCEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhccCC-----cc---cHHH
Q 005066 357 NEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLKAD-----DV---DLMI 417 (715)
Q Consensus 357 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~~~~~-----dv---dl~~ 417 (715)
.-.|-||++||+- |..... -|+|-- ++.+..|...+|.+ +.++++++..... .+ .++.
T Consensus 356 kVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 1248999999963 222222 233321 45666788887754 4455555432211 12 2445
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 418 IARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 418 la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|..+..--+.++|+|+++.|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 666655557899999999999988
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=1.2e-10 Score=110.13 Aligned_cols=113 Identities=34% Similarity=0.384 Sum_probs=69.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh--HhhhhHHH------HHHHHHHHHhCCCeEEEEcCchhhcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGARR------VRDLFSAAKKRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~--~vg~~~~~------vr~lF~~A~~~~P~ILfIDEID~l~~ 330 (715)
+|||+||||||||++|+.+|+.++.+++.++++...+. +.|.-.-. ....+..+. ..++|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999988765432 22211000 000000000 156899999999762
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc-------cc-cCC------CEEEEeecCCCC----cccccccCCCCc
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDG-------FK-QNE------GIIVIAATNFPE----SLDKALVRPGRF 382 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~-------~~-~~~------~ViVIaaTN~p~----~LD~aLlRpgRF 382 (715)
......++.++..-.- .. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 -------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2333334444432100 01 111 489999999988 89999998 77
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.2e-09 Score=115.10 Aligned_cols=149 Identities=26% Similarity=0.322 Sum_probs=102.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC----------------------
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---------------------- 282 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~---------------------- 282 (715)
+++|.+++...+...+.. ..+.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 567777776666655442 224555799999999999999999999986
Q ss_pred --CCeEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005066 283 --VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 356 (715)
Q Consensus 283 --~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~ 356 (715)
-.++.++.++....- .....++++-..... ...-|++|||+|.+. ....|.++..++. +
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----------~~A~nallk~lEe--p 136 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLEE--P 136 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhcc--C
Confidence 356777766644321 223445554444322 335799999999883 3567888888774 5
Q ss_pred CCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHH
Q 005066 357 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401 (715)
Q Consensus 357 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 401 (715)
..+..+|.+||.++.+-+.+.+ |.. .+.|++|+........+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 6678888899999988888876 663 67777755554444333
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=9.2e-10 Score=118.92 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=122.9
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-----------------
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP----------------- 284 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~----------------- 284 (715)
.|++|+|++++++.|...+. .++.|..+||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999998776 35667799999999999999999999987321
Q ss_pred -eEEeeccc------hhhhH---hh--------hhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHH
Q 005066 285 -FFSCSGSE------FEEMF---VG--------VGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKM 342 (715)
Q Consensus 285 -fi~is~s~------~~~~~---vg--------~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~ 342 (715)
++.+.... ....+ .| .....+|++.+.+. .....|++||++|.+. ..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~ 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EA 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HH
Confidence 11111100 00000 00 11235566655543 2345799999999882 34
Q ss_pred HHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcC
Q 005066 343 TLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGT 422 (715)
Q Consensus 343 ~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t 422 (715)
..|.||..|+... +.++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|+....... .+.+...++...
T Consensus 140 aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a 211 (314)
T PRK07399 140 AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALA 211 (314)
T ss_pred HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHc
Confidence 5688888888643 44566777788999999987 76 4889999999999998887643211 122245666666
Q ss_pred CCCCHHHHHHHHH
Q 005066 423 PGFSGADLANLVN 435 (715)
Q Consensus 423 ~G~sgadI~~lv~ 435 (715)
.| +++...++++
T Consensus 212 ~G-s~~~al~~l~ 223 (314)
T PRK07399 212 QG-SPGAAIANIE 223 (314)
T ss_pred CC-CHHHHHHHHH
Confidence 55 4555444443
No 186
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.1e-10 Score=119.10 Aligned_cols=134 Identities=22% Similarity=0.335 Sum_probs=82.5
Q ss_pred CeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEeecC----CCCcccccccCCCCcc
Q 005066 317 PCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFD 383 (715)
Q Consensus 317 P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd 383 (715)
-+|+||||||.+..+...+. .-....+...||-.++|. ...+++++|++-- .|+.|=|.|. |||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 35999999999987664332 233445566677666653 3456789998753 5667777776 6999
Q ss_pred cccccCCCCHHHHHHHHHHHh----hh---hccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 384 RHIVVPNPDVEGRRQIMESHM----SK---VLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 384 ~~I~v~~Pd~~eR~~ILk~~l----~~---~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
-.+++...+.++-..||..-- +. .....++++ -|+-..|..+..-|.. ..+....|...-++.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l--------~FtddaI~~iAeiA~~--vN~~~ENIGARRLhT 398 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVEL--------EFTDDAIKRIAEIAYQ--VNEKTENIGARRLHT 398 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeE--------EecHHHHHHHHHHHHH--hcccccchhHHHHHH
Confidence 999999999999888874221 11 111222222 2555566655543321 123334566666666
Q ss_pred HHHHHh
Q 005066 457 AKDKIM 462 (715)
Q Consensus 457 A~~~i~ 462 (715)
.+++++
T Consensus 399 vlErlL 404 (444)
T COG1220 399 VLERLL 404 (444)
T ss_pred HHHHHH
Confidence 666554
No 187
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.08 E-value=1.2e-09 Score=129.93 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=121.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~ 296 (715)
+.+|++++|.+...+.+.+.+..+.. .+..|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46799999999998888877765332 23479999999999999999998754 679999999876432
Q ss_pred H-----hhhh-------HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc------
Q 005066 297 F-----VGVG-------ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------ 356 (715)
Q Consensus 297 ~-----vg~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~------ 356 (715)
. .|.. .......|..+ ..++||||||+.+. ......|+..++. +..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 1 1110 01112234333 34799999999883 2223344444432 111
Q ss_pred -CCCEEEEeecCCCC--cccccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhhcc----C-Cccc---HHHH
Q 005066 357 -NEGIIVIAATNFPE--SLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVD---LMII 418 (715)
Q Consensus 357 -~~~ViVIaaTN~p~--~LD~aLlRpg---RFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~----~-~dvd---l~~l 418 (715)
..++.+|++|+..- .+....+++. |+. .+.|..|+..+|.+ ++++++.+... . ..++ +..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 24578899987642 1222112211 232 45677788777765 55666554321 1 1122 4456
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A 441 (715)
..+..--+.++|+++++.|...+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 66665567899999998887654
No 188
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.08 E-value=1.4e-09 Score=128.38 Aligned_cols=209 Identities=20% Similarity=0.289 Sum_probs=126.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~ 296 (715)
..+|++++|.+...+++.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999998777776665432 223469999999999999999998765 579999999887532
Q ss_pred -----Hhhhh--H--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------CC
Q 005066 297 -----FVGVG--A--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------NE 358 (715)
Q Consensus 297 -----~vg~~--~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~~ 358 (715)
+.|.. . ......|.. ...++||||||+.+. ...+ ..|+..++. +.. .-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~--------~~~Q---~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLS--------PELQ---SALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCC--------HHHH---HHHHHHHhcCcEEeCCCCceEEe
Confidence 11110 0 000112222 235799999999884 2233 334443332 111 11
Q ss_pred CEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhc----cCCccc---HHHHHh
Q 005066 359 GIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVL----KADDVD---LMIIAR 420 (715)
Q Consensus 359 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~~----~~~dvd---l~~la~ 420 (715)
++.||++||..- . .+...|+|.. .+.|..|...+|.+ ++++++.+.. ....++ +..|..
T Consensus 457 ~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 577899888542 1 1122233321 45667777777743 5566665431 111233 445666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 421 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 421 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+...-+.++|+++++.+...+ ....|+.+|+...+
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 665567889999998877653 34578888875443
No 189
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.07 E-value=9.5e-10 Score=126.64 Aligned_cols=208 Identities=21% Similarity=0.276 Sum_probs=122.4
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++-... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999887777665553221 23469999999999999999986544 57999999998754
Q ss_pred hHh-----hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------
Q 005066 296 MFV-----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ------- 356 (715)
Q Consensus 296 ~~v-----g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~------- 356 (715)
... |... .....+|+.+ ..+.|||||||.+. ...+..+..++..- .|..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~-~~~~~g~~~~~ 336 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS--------PRMQAKLLRFLNDG-TFRRVGEDHEV 336 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC--------HHHHHHHHHHHhcC-CcccCCCCcce
Confidence 321 1100 0112334443 34689999999884 22333333333321 1211
Q ss_pred CCCEEEEeecCCCC-c------ccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhc----c-CCccc---HHH
Q 005066 357 NEGIIVIAATNFPE-S------LDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVL----K-ADDVD---LMI 417 (715)
Q Consensus 357 ~~~ViVIaaTN~p~-~------LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~----~-~~dvd---l~~ 417 (715)
..++.||++|+.+- . +.+.|.. |+. .+.+..|...+|.+ ++++++.... . ...++ +..
T Consensus 337 ~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~ 413 (520)
T PRK10820 337 HVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 413 (520)
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23467888887542 1 2233333 443 35666777766653 4445554321 1 11233 334
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 418 IARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 418 la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
|..+...-+.++|++++..|...+ ....|+.+|+
T Consensus 414 L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 414 LTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 455544446678888887776543 3456777775
No 190
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.07 E-value=5e-09 Score=109.00 Aligned_cols=129 Identities=24% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC-------------CCcccccccCCCCc
Q 005066 316 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF-------------PESLDKALVRPGRF 382 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~-------------p~~LD~aLlRpgRF 382 (715)
-|.||||||++.+- ...+.-|-..++ .+-.-+||.+||+ |..+++.|+. |+
T Consensus 296 vPGVLFIDEVhMLD-----------iEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-----------IECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL 359 (456)
T ss_pred cCcceEeeehhhhh-----------hHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he
Confidence 46778888877651 122222333333 2223466666773 3445666654 55
Q ss_pred ccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 383 DRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 383 d~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
.+|..-+++.++.++|++...+...+.- +-.+..++.....-|-+-.-+|+.-|.+.|...+++.|..+|++++.+-.
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 2556667888899999999886543322 22355566654444555555777778888989999999999999876543
No 191
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.07 E-value=2.1e-08 Score=119.48 Aligned_cols=352 Identities=13% Similarity=0.087 Sum_probs=170.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC-------CCeEEeeccchhhhHhh--hhHHHH-HHHHHHHHhCCCeEEEEcCchhh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGSEFEEMFVG--VGARRV-RDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~-------~~fi~is~s~~~~~~vg--~~~~~v-r~lF~~A~~~~P~ILfIDEID~l 328 (715)
+|||+|+||||||.+|++++.... .++..+.+..+.. +.+ .+...+ ...+ .....+++||||+|.+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaL---vlAdgGtL~IDEidkm 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAV---VLANGGVCCIDELDKC 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcE---EEcCCCeEEecchhhC
Confidence 699999999999999999998653 3444444433221 000 000000 0011 1123469999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC-------------cccccccCCCCccc
Q 005066 329 GGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDR 384 (715)
Q Consensus 329 ~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~ 384 (715)
. ...+ ..|+..|+.- .-+..+.|||++|+.. .|+++|++ |||.
T Consensus 570 s--------~~~Q---~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDL 636 (915)
T PTZ00111 570 H--------NESR---LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDL 636 (915)
T ss_pred C--------HHHH---HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcE
Confidence 3 1222 3344444321 1235789999999752 36788887 9998
Q ss_pred cc-ccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 385 HI-VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 385 ~I-~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
.+ .++.|+.+.=..|.++.++........+-. ....++........-.+. ......-..++.+.|.+ .+.
T Consensus 637 If~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~lLrk----YI~ 707 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG---NDEDTYDRSNTMHVEDES--LRSEKDYNKNDLDMLRM----YIK 707 (915)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhccccccccc---ccccchhccccccccccc--cccccccCCCCHHHHHH----HHH
Confidence 76 447888777666666655432110000000 000000000000000000 00000011233333322 111
Q ss_pred ccc-ccccccchhhhhhhhHHHhhhHHHHhhhC-CCCcce---eEEEee----CCCccceEEecCCCccccccHHHHHHH
Q 005066 464 GSE-RKSAVISDESRKLTAFHEGGHALVAVHTD-GALPVH---KATIVP----RGMSLGMVAQLPDKDETSISRKQMLAR 534 (715)
Q Consensus 464 g~~-~~~~~~s~~~~~~~A~hEaGhAlva~~~~-~~~~v~---kvti~p----rg~~lG~~~~~p~~~~~~~tr~~l~~~ 534 (715)
-.. ...+.++++ |...|+.+|.. ...... -..... .+.+++|.. .......+|-.+|++.
T Consensus 708 YAR~~~~P~Ls~e---------A~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~iT~RqLEsL 776 (915)
T PTZ00111 708 FSKLHCFPKLSDE---------AKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQS--SGTRMIYVSSRMISSI 776 (915)
T ss_pred HHhccCCCCCCHH---------HHHHHHHHHHHHhhhhcccccccccccccccccccccccc--ccCCcccccHHHHHHH
Confidence 111 112344544 33333333332 000000 000000 001111211 0112346788899999
Q ss_pred HHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005066 535 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDR 614 (715)
Q Consensus 535 i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~ 614 (715)
|..+ .|--++-|.+ .|+ ..|.+.|.+|-.....+.++.+..|.+..+....|.+.+ .+..+ ..+.+++.+
T Consensus 777 IRLs---EA~AK~rLs~-~Vt---~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~--~r~~~-~~~~~~i~~ 846 (915)
T PTZ00111 777 IRIS---VSLARMRLST-VVT---PADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTN--KMQQL-NQMYEQVLS 846 (915)
T ss_pred HHHH---HHHhhhcCcC-ccc---HHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHH--HHHHH-HHHHHHHHH
Confidence 9886 6666888875 466 799999999999999999999888998876554444322 22221 122222222
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHH--------HhcCCCHHHHHHHHHhhhh
Q 005066 615 AYNNAKTILTMHSKELHALANALL--------EHETLSGSQIKALLAQVNS 657 (715)
Q Consensus 615 a~~ra~~iL~~~r~~L~~lA~~Ll--------e~etL~~~ei~~il~~~~~ 657 (715)
........-......++.|.+.+. +++-++.++++++|.....
T Consensus 847 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~ 897 (915)
T PTZ00111 847 VLTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQ 897 (915)
T ss_pred HHHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHh
Confidence 211100000000122333333332 4567999999999987653
No 192
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=7.2e-10 Score=121.97 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=120.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH----hCCCeEEeeccchh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGSEFE 294 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e----l~~~fi~is~s~~~ 294 (715)
....|.+++|.+..-+++++.+..+ ......||++|++||||+++|+.|... .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567899999998877777766641 222347999999999999999999643 36799999999886
Q ss_pred hhHhhh------------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--c------
Q 005066 295 EMFVGV------------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--F------ 354 (715)
Q Consensus 295 ~~~vg~------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~------ 354 (715)
+..... ....-..+|+.| ..++||+|||..+.. .....|+..||. +
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 653221 112223444444 236999999998842 223445555543 1
Q ss_pred -ccCCCEEEEeecCCC--Ccccc--cccCCCCcccccccCCCCHHHHHH----HHHHHhhhh----ccCCccc----HHH
Q 005066 355 -KQNEGIIVIAATNFP--ESLDK--ALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKV----LKADDVD----LMI 417 (715)
Q Consensus 355 -~~~~~ViVIaaTN~p--~~LD~--aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~----~~~~dvd----l~~ 417 (715)
.....|.+|+|||.. +.+-. .|.+ -|+ .+.|..|+.++|.. +++++++.. .....++ +..
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTR-RLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhh-hhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 123468889888732 22222 3333 033 33555566665543 555555433 2221112 233
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 418 IARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 418 la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
+-.+..--+.++|.|++..++..+..
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 44444334789999999998887743
No 193
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.04 E-value=1.2e-08 Score=108.24 Aligned_cols=215 Identities=21% Similarity=0.276 Sum_probs=131.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc---
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE--- 292 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~--- 292 (715)
.-+|+..+++.|..+.+.+..|.. .-+.++||+|++|.|||++++.+.... .+|++.+....
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 468999999999888888887753 233479999999999999999998765 35777765421
Q ss_pred ---hhhhH---hh-------hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC-
Q 005066 293 ---FEEMF---VG-------VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE- 358 (715)
Q Consensus 293 ---~~~~~---vg-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~- 358 (715)
|.... .| .....-..+....+..++-+|+|||++.+.... .. .++.+..+|..| ...-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----~~-~qr~~Ln~LK~L---~NeL~ 180 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----YR-KQREFLNALKFL---GNELQ 180 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----HH-HHHHHHHHHHHH---hhccC
Confidence 11110 01 111222333455567788899999999975321 11 122222222222 2222
Q ss_pred -CEEEEeecCCCC--cccccccCCCCcccccccCCCCH-HHHHHHHHHHhhhhcc--CCccc---H-HHHHhcCCCCCHH
Q 005066 359 -GIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSKVLK--ADDVD---L-MIIARGTPGFSGA 428 (715)
Q Consensus 359 -~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk~~l~~~~~--~~dvd---l-~~la~~t~G~sga 428 (715)
.++.+|+-.-.. .-|+.+.+ ||+ .+.+|.-.. ++-..++..+-....+ .+.+. + ..|-..+.| +.+
T Consensus 181 ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~iG 256 (302)
T PF05621_consen 181 IPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LIG 256 (302)
T ss_pred CCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-chH
Confidence 344444432222 24677776 997 556665332 3344455555443322 22232 2 235556666 457
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 429 DLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 429 dI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
+|.++++.|+..|.+.|...||.++|...
T Consensus 257 ~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 257 ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 89999999999999999999999998753
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=9.5e-10 Score=108.76 Aligned_cols=111 Identities=31% Similarity=0.366 Sum_probs=76.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCC----CeEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchhhcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGV----PFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~----~fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~ 330 (715)
.+||+||+|+|||.+|+++|..+.. +++.++++++... +.....+..++..+ ......||||||||++..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 5899999999999999999999997 9999999998771 11111222222211 111123999999999976
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc---------ccCCCEEEEeecCCCCc
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDGF---------KQNEGIIVIAATNFPES 371 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~~---------~~~~~ViVIaaTN~p~~ 371 (715)
+.....+.....+.+.||..+++- -...++++|+|+|.-..
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 544444455567778888877642 12357999999997654
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.00 E-value=5.4e-09 Score=113.07 Aligned_cols=65 Identities=45% Similarity=0.676 Sum_probs=51.8
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccch
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEF 293 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~ 293 (715)
..+.++|+.++++.+--+++.++..+ --.+++||.||||||||.||-++|+++| +||+.++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 35789999999999998888876532 2356999999999999999999999996 89999998875
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.00 E-value=4.7e-09 Score=106.36 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=121.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-----CeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----PFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-----~fi~is~s~ 292 (715)
..+..+.||+|.++..+.|+-+... +..| +++|.||||||||+-+.++|+++=. -++.+++|+
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 4566799999999999988876552 3334 6999999999999999999998822 356777766
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhCCC----eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 293 FEEMFVGVGARRVRDLFSAAKKRSP----CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~~~~P----~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
-..- .. .+.--..|.+-+-.-| .||++||.|++.. +.++.+. +.|+-+.. ...+..++|.
T Consensus 89 eRGI--Dv-VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----gAQQAlR-------RtMEiyS~--ttRFalaCN~ 152 (333)
T KOG0991|consen 89 ERGI--DV-VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----GAQQALR-------RTMEIYSN--TTRFALACNQ 152 (333)
T ss_pred cccc--HH-HHHHHHHHHHhhccCCCCceeEEEeeccchhhh----HHHHHHH-------HHHHHHcc--cchhhhhhcc
Confidence 4321 11 1222344554433222 5999999998841 1122222 22332333 3345667787
Q ss_pred CCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 369 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 369 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
.+.+=+.+.+ |.- .+.+...+..+...-|....+..... .+..++.+.-...| |+++.+|. +.+...+-.
T Consensus 153 s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNn--LQst~~g~g 223 (333)
T KOG0991|consen 153 SEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNN--LQSTVNGFG 223 (333)
T ss_pred hhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHH--HHHHhcccc
Confidence 7776666654 443 33444444444433333333322221 22335556555555 88877775 345556667
Q ss_pred ccCHHHHHHHHH
Q 005066 448 AVTMADLEYAKD 459 (715)
Q Consensus 448 ~It~edl~~A~~ 459 (715)
.|+.+-+-+.++
T Consensus 224 ~Vn~enVfKv~d 235 (333)
T KOG0991|consen 224 LVNQENVFKVCD 235 (333)
T ss_pred ccchhhhhhccC
Confidence 788777766554
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=2.8e-09 Score=115.93 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=107.5
Q ss_pred CCccCCC-cHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC----------------
Q 005066 222 KFSDVKG-VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---------------- 284 (715)
Q Consensus 222 ~f~dv~G-~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~---------------- 284 (715)
.|+.|+| ++.+++.|+..+. .++.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 8889888887665 35678889999999999999999999987432
Q ss_pred --------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005066 285 --------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 352 (715)
Q Consensus 285 --------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld 352 (715)
+..+... .. ..+...++++.+.+. ....-|++|||+|.+. ....|.||..|+
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111110 00 112345666655443 2234699999999872 446788998888
Q ss_pred ccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHH
Q 005066 353 GFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 353 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~ 402 (715)
. +.+++++|.+|+.++.|.|.+++ |.. .++|++|+.++..++|+.
T Consensus 136 E--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 E--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred C--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 4 56677788888888899999987 763 789999999988777654
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=98.97 E-value=8.4e-09 Score=123.21 Aligned_cols=170 Identities=19% Similarity=0.174 Sum_probs=120.0
Q ss_pred EEEEc--CCCCChHHHHHHHHHHh-----CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhC------CCeEEEEcCch
Q 005066 260 VLLVG--PPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKR------SPCIIFIDEID 326 (715)
Q Consensus 260 vLL~G--PPGTGKT~LAralA~el-----~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~------~P~ILfIDEID 326 (715)
-+..| |++.|||++|+++|+++ +.+++.+|+++... ...++++...+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 56668 99999999999999998 56899999998532 23455555443322 23699999999
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005066 327 AIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 406 (715)
Q Consensus 327 ~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 406 (715)
.+. ....+.|+..|+. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++....|+..+++
T Consensus 641 ~Lt-----------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 641 ALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred cCC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 883 2346778887774 34678899999999999999987 76 48899999999999988888765
Q ss_pred hccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 407 VLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 407 ~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
.... ++-.+..++..+.| |++.+++.....+.. ...|+.+++...
T Consensus 705 Egi~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~--~~~It~~~V~~~ 750 (846)
T PRK04132 705 EGLELTEEGLQAILYIAEG----DMRRAINILQAAAAL--DDKITDENVFLV 750 (846)
T ss_pred cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 4322 23346678877776 444444433222222 245777776654
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=6.2e-09 Score=113.96 Aligned_cols=216 Identities=27% Similarity=0.380 Sum_probs=128.0
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-------CCCeEEe----
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSC---- 288 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------~~~fi~i---- 288 (715)
...|.-++|+|..|..|--- .-+|. -.|+||.|+.|||||+++|+|+.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46689999999998877521 11221 2379999999999999999999987 3322000
Q ss_pred --eccc-------------------hhhhHhhhhHHHHH------HH-------HH---HHHhCCCeEEEEcCchhhcCC
Q 005066 289 --SGSE-------------------FEEMFVGVGARRVR------DL-------FS---AAKKRSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 289 --s~s~-------------------~~~~~vg~~~~~vr------~l-------F~---~A~~~~P~ILfIDEID~l~~~ 331 (715)
.|.. |...-.|.++.++- .. |. .++ ..-.||+|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc---
Confidence 0000 11111122222211 11 11 111 22369999999977
Q ss_pred CCCCchHHHHHHHHHHHHHhh---------c--cccCCCEEEEeecCCCC-cccccccCCCCccccccc-CCCCHHHHHH
Q 005066 332 RNPKDQQYMKMTLNQLLVELD---------G--FKQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVV-PNPDVEGRRQ 398 (715)
Q Consensus 332 r~~~~~~~~~~~l~~LL~~Ld---------~--~~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v-~~Pd~~eR~~ 398 (715)
..++++.||..+. | +...-++++|+|+|.-+ .|-|.|+- ||...|.+ ++.+.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 2444555555443 2 22345699999999664 47788876 99999988 5567899999
Q ss_pred HHHHHhhhhccC--------------------------Cccc-----HHHHHhc-----CCCCCHHHHHHHHHHHHHHHH
Q 005066 399 IMESHMSKVLKA--------------------------DDVD-----LMIIARG-----TPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 399 ILk~~l~~~~~~--------------------------~dvd-----l~~la~~-----t~G~sgadI~~lv~~A~~~A~ 442 (715)
|++..+.-. .. +.+. ...++.. ..| .-+|| -+++.|..+|+
T Consensus 227 Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a~aa 303 (423)
T COG1239 227 IIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKALAA 303 (423)
T ss_pred HHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHHHHH
Confidence 988766421 10 0110 1111111 111 11232 35566667777
Q ss_pred HcCCCccCHHHHHHHHHHHhcc
Q 005066 443 MDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 443 ~~~~~~It~edl~~A~~~i~~g 464 (715)
..|+..|+.+|++.|....+..
T Consensus 304 ~~Gr~~v~~~Di~~a~~l~l~h 325 (423)
T COG1239 304 LRGRTEVEEEDIREAAELALLH 325 (423)
T ss_pred hcCceeeehhhHHHHHhhhhhh
Confidence 8888888888988887766443
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.6e-09 Score=113.93 Aligned_cols=155 Identities=27% Similarity=0.428 Sum_probs=109.0
Q ss_pred HHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe-eccchhhhHhhhhHHHHHHHHHHHHhCC
Q 005066 238 EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC-SGSEFEEMFVGVGARRVRDLFSAAKKRS 316 (715)
Q Consensus 238 eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i-s~s~~~~~~vg~~~~~vr~lF~~A~~~~ 316 (715)
-++..++++++ ..-..+||+||||+|||.||-.+|...+.||+.+ +..++...........++..|+.|++..
T Consensus 525 llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 525 LLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 34455555543 2234799999999999999999999999999977 4444443333333457899999999988
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC-CEEEEeecCCCCcccc-cccCCCCcccccccCCCCH-
Q 005066 317 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE-GIIVIAATNFPESLDK-ALVRPGRFDRHIVVPNPDV- 393 (715)
Q Consensus 317 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~-~ViVIaaTN~p~~LD~-aLlRpgRFd~~I~v~~Pd~- 393 (715)
-+||++|+|+.|.. -.+-+..+.+.++..|+..+....+.+ +.+|++||.+.+.|.. .++. .|+-.+.+|....
T Consensus 599 lsiivvDdiErLiD-~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 599 LSIIVVDDIERLLD-YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTG 675 (744)
T ss_pred ceEEEEcchhhhhc-ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCch
Confidence 89999999998863 223445667777888888777655444 5777788876655432 2333 6888888887665
Q ss_pred HHHHHHHH
Q 005066 394 EGRRQIME 401 (715)
Q Consensus 394 ~eR~~ILk 401 (715)
++..+++.
T Consensus 676 ~~~~~vl~ 683 (744)
T KOG0741|consen 676 EQLLEVLE 683 (744)
T ss_pred HHHHHHHH
Confidence 55555544
No 201
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=7e-09 Score=112.72 Aligned_cols=132 Identities=23% Similarity=0.361 Sum_probs=97.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------------------------eEEeeccchhhhHhhhhHHHHHHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDLF 309 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------------------fi~is~s~~~~~~vg~~~~~vr~lF 309 (715)
++.|..+||+||+|+|||++|+++|+.+.+. ++.+....- . ...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 6678899999999999999999999988542 222211100 0 012345677766
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccc
Q 005066 310 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 385 (715)
Q Consensus 310 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 385 (715)
+.+.. ...-|++||++|.+ .....|.||..|+. +.+++++|.+|+.++.|.|.+++ |.. .
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 65532 34569999999988 34567899998885 55788899999999999999997 875 6
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 005066 386 IVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 386 I~v~~Pd~~eR~~ILk~~l 404 (715)
+.|++|+.++..+.|....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 8999999998888877654
No 202
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.93 E-value=4.6e-09 Score=118.35 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=122.1
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v 298 (715)
.|.+++|.+...+.+.+.+..+.. ....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 566788888777777665543221 23479999999999999999998765 57999999998754322
Q ss_pred hhh------------HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------C
Q 005066 299 GVG------------ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------N 357 (715)
Q Consensus 299 g~~------------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~ 357 (715)
... .......|. ....++||||||+.+. ... ...|+..++. +.. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~--------~~~---q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLP--------LNL---QAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCC--------HHH---HHHHHHHHhhCeEEeCCCCceee
Confidence 110 000011121 2335799999999884 222 3334443332 111 1
Q ss_pred CCEEEEeecCCCC-------cccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc----C-Cccc---HHHH
Q 005066 358 EGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVD---LMII 418 (715)
Q Consensus 358 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~----~-~dvd---l~~l 418 (715)
.++.+|++|+..- .+.+.|.. |+. .+.|..|...+|.+ +++++++.... . ..++ +..|
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 2578888887541 22233322 343 45677777777765 55666554321 1 1233 4456
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
..+..--+.++|+++++.|+..+ ....|+.+|+
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 66665567889999998887654 3356776665
No 203
>PRK08116 hypothetical protein; Validated
Probab=98.89 E-value=6.1e-09 Score=110.22 Aligned_cols=163 Identities=21% Similarity=0.333 Sum_probs=89.2
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 296 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~ 296 (715)
..+|++..-.+.....+.....++.+. ... ...+.|++|+|+||||||+||.++++++ +.+++.++.+++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~---~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKF---EEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHH---Hhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 456777653343333333333333322 111 1234589999999999999999999986 789999998887665
Q ss_pred Hhhh----hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC-Cc
Q 005066 297 FVGV----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ES 371 (715)
Q Consensus 297 ~vg~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p-~~ 371 (715)
+... ......++++... ...+|+|||++.. ...++....+..++. ... ..+..+|.|||.+ +.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e------~~t~~~~~~l~~iin---~r~-~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE------RDTEWAREKVYNIID---SRY-RKGLPTIVTTNLSLEE 224 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCC------CCCHHHHHHHHHHHH---HHH-HCCCCEEEECCCCHHH
Confidence 3221 1112223333332 3469999999642 122334444444443 322 2344577777755 33
Q ss_pred ----ccccccCCCCc---ccccccCCCCHHHHHHHHHH
Q 005066 372 ----LDKALVRPGRF---DRHIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 372 ----LD~aLlRpgRF---d~~I~v~~Pd~~eR~~ILk~ 402 (715)
++..+.. |+ ...|.++-||. |.++.+.
T Consensus 225 L~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 225 LKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred HHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHHH
Confidence 3444443 43 12345555554 4444433
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.88 E-value=5.4e-09 Score=103.11 Aligned_cols=119 Identities=29% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH-----
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----- 297 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----- 297 (715)
|+|.++..+++.+.+..+. ..|..|||+|++||||+++|++|-+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5778877777776665432 334689999999999999999998865 5799999999875432
Q ss_pred hhhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------CCCEE
Q 005066 298 VGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------NEGII 361 (715)
Q Consensus 298 vg~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~~~Vi 361 (715)
.|... .....+|..|.. .+||||||+.+. ..+...|+..|+. |.. .-++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccce
Confidence 22110 112356666543 599999999883 2333444444432 211 23689
Q ss_pred EEeecCC
Q 005066 362 VIAATNF 368 (715)
Q Consensus 362 VIaaTN~ 368 (715)
||++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 9999985
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.87 E-value=1.4e-08 Score=115.24 Aligned_cols=203 Identities=22% Similarity=0.277 Sum_probs=125.1
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v 298 (715)
.|.+++|.+...+.+.+.+..+.. ....+||+|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899998887777666554222 23479999999999999999998876 57999999988744321
Q ss_pred hhhHHHHHHHHHH---------------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--cc-----
Q 005066 299 GVGARRVRDLFSA---------------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQ----- 356 (715)
Q Consensus 299 g~~~~~vr~lF~~---------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~~----- 356 (715)
. ..+|.. .....++.|||||||.+. ...+ ..|+..++.- ..
T Consensus 206 ~------~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~--------~~~q---~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 206 E------SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP--------LDVQ---TRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred H------HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------HHHH---HHHHHHHhcCcEEeCCCCC
Confidence 1 112211 012235689999999884 2223 3444444321 11
Q ss_pred --CCCEEEEeecCCCC-------cccccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhccC-----Ccc---cH
Q 005066 357 --NEGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLKA-----DDV---DL 415 (715)
Q Consensus 357 --~~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~~~~~-----~dv---dl 415 (715)
..++.||++|+..- .+.+.|.. ||. .+.+..|...+|.+ ++.++++..... ..+ .+
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 22468888887531 23344443 453 35566666665544 666666543111 112 24
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 416 MIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 416 ~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
..|..+..--+.++|+++++.+...+ ....|+.+|+...
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~ 384 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGE 384 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHh
Confidence 45666666667899999998877654 3457888887543
No 206
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.87 E-value=5.5e-08 Score=111.43 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=128.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh----------CCCeEEeeccchhhh---Hhh-------h------hHHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFEEM---FVG-------V------GARRVRDLFSAA 312 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el----------~~~fi~is~s~~~~~---~vg-------~------~~~~vr~lF~~A 312 (715)
.+.+.|-||||||.+++.+-.++ ..+++.+++-.+.+. |.. . +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999998866 467888888766443 221 1 112223333311
Q ss_pred -HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc-C-CCCcc-ccccc
Q 005066 313 -KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV-R-PGRFD-RHIVV 388 (715)
Q Consensus 313 -~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl-R-pgRFd-~~I~v 388 (715)
-...+|||+|||+|.|..+ .+.++..++.+-. .++.+++||+..|..+....-|. | ..|++ +.|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeeec
Confidence 2345799999999999754 3556677765533 34567888888876554322222 1 12554 36789
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHcCC-------CccCHHHHHHHHH
Q 005066 389 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSG--ADLANLVNIAALKAAMDGA-------KAVTMADLEYAKD 459 (715)
Q Consensus 389 ~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sg--adI~~lv~~A~~~A~~~~~-------~~It~edl~~A~~ 459 (715)
.+++..+..+|+...+.....-..--.+.+|+.-...|| +.--.+|+.|...|..+.. ..|++.|+.+|++
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~ 653 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAIN 653 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHH
Confidence 999999999999999987622222223334444433343 3334789999888876554 5688999999998
Q ss_pred HHhc
Q 005066 460 KIMM 463 (715)
Q Consensus 460 ~i~~ 463 (715)
.++.
T Consensus 654 em~~ 657 (767)
T KOG1514|consen 654 EMLA 657 (767)
T ss_pred HHhh
Confidence 8764
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.87 E-value=1.8e-08 Score=109.67 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=56.2
Q ss_pred CCc-cCCCcHHHHHHHHHHHHHhcCchhHhhhCC-CCCCeEEEEcCCCCChHHHHHHHHHHhCC-------CeEEeec--
Q 005066 222 KFS-DVKGVDEAKQELEEIVHYLRDPKRFTRLGG-KLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFSCSG-- 290 (715)
Q Consensus 222 ~f~-dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~-~~pkgvLL~GPPGTGKT~LAralA~el~~-------~fi~is~-- 290 (715)
-|+ |+.|+++++.++-+ +++... .|. ...+.++|+||||||||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 89999999665554 444332 122 23467899999999999999999999976 9999988
Q ss_pred --cchhhhHhhhhHHHHHHHH
Q 005066 291 --SEFEEMFVGVGARRVRDLF 309 (715)
Q Consensus 291 --s~~~~~~vg~~~~~vr~lF 309 (715)
+.+.+..++......|..|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 6555554444444444333
No 208
>PRK12377 putative replication protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=104.71 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhh--HHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG--ARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~--~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 331 (715)
..+++|+||||||||+||.++++++ +..++.++..++.......- ......+++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3589999999999999999999988 67788888887766432211 01122333333 456799999997652
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 332 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 332 r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
...+...++.+++.. +......+|.|||..
T Consensus 177 ----~s~~~~~~l~~ii~~----R~~~~~ptiitSNl~ 206 (248)
T PRK12377 177 ----ETKNEQVVLNQIIDR----RTASMRSVGMLTNLN 206 (248)
T ss_pred ----CCHHHHHHHHHHHHH----HHhcCCCEEEEcCCC
Confidence 223344555555543 223344567788865
No 209
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1e-08 Score=111.55 Aligned_cols=95 Identities=33% Similarity=0.552 Sum_probs=70.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-HhhhhHH-HHHHHHHHH----HhCCCeEEEEcCchhhcCCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGAR-RVRDLFSAA----KKRSPCIIFIDEIDAIGGSR 332 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~-~vg~~~~-~vr~lF~~A----~~~~P~ILfIDEID~l~~~r 332 (715)
+|||.||+|+|||+||+.||+-+++||..++|..+... |+|+..+ .+..++..| .+.+..|+||||+|.|..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 79999999999999999999999999999999998765 8887644 455666554 23456799999999998443
Q ss_pred CCCc---hHHHHHHHHHHHHHhhc
Q 005066 333 NPKD---QQYMKMTLNQLLVELDG 353 (715)
Q Consensus 333 ~~~~---~~~~~~~l~~LL~~Ld~ 353 (715)
.+-. +-.-+.+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 2211 11123445566666665
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.82 E-value=2.8e-08 Score=97.39 Aligned_cols=133 Identities=26% Similarity=0.387 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-----------------------
Q 005066 228 GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP----------------------- 284 (715)
Q Consensus 228 G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~----------------------- 284 (715)
|++++.+.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67788787877665 35678889999999999999999999987321
Q ss_pred eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE
Q 005066 285 FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI 360 (715)
Q Consensus 285 fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~V 360 (715)
++.++...... ......++.+...+. ....-|++|||+|.+ .....|.||..|+. +..++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe--pp~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE--PPENT 133 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS--TTTTE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC--CCCCE
Confidence 22222221100 113355666666543 234579999999988 45678999999984 56788
Q ss_pred EEEeecCCCCcccccccCCCCcccccccCC
Q 005066 361 IVIAATNFPESLDKALVRPGRFDRHIVVPN 390 (715)
Q Consensus 361 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 390 (715)
++|.+|+.++.|-|.+++ |.- .|.|++
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred EEEEEECChHHChHHHHh--hce-EEecCC
Confidence 999999999999999987 663 455544
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.7e-08 Score=108.56 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=98.2
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe-------------------------EEeeccchh-------------
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------------------------FSCSGSEFE------------- 294 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~f-------------------------i~is~s~~~------------- 294 (715)
..+.|.++||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 457888999999999999999999999884421 111110000
Q ss_pred ---hh------H-hhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE
Q 005066 295 ---EM------F-VGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI 360 (715)
Q Consensus 295 ---~~------~-vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~V 360 (715)
.. . ...+...+|++.+.+. ....-|++||++|.+ ....-|.||..|+ ++.+++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCc
Confidence 00 0 0122356666666543 223469999999988 3456789999998 577889
Q ss_pred EEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHH
Q 005066 361 IVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 361 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 403 (715)
++|.+|+.++.|.|.+++ |. ..|.|++|+.++..+.|...
T Consensus 164 ~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 999999999999999998 87 48899999999988887654
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.79 E-value=4.6e-08 Score=102.09 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=82.7
Q ss_pred CCCCCccCC-CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 219 SNTKFSDVK-GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 219 ~~~~f~dv~-G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
.+.+|++.. +.+..+..+..+..+..+.. ....+++|+|+||||||+|+.+++.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 356788765 34444444555444443211 112489999999999999999999988 7888899888887
Q ss_pred hhHhhhh---HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 295 EMFVGVG---ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 295 ~~~vg~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
..+.... ......++.... ...+|+|||++... ...+...++.+++.. +......+|.+||..
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~------~s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT------ESRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC------CCHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 6543221 112233444433 46799999998753 234445566666643 223345677788854
No 213
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1.7e-07 Score=103.43 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=131.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccchhhh--
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEM-- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~~~~-- 296 (715)
..++|.+.....+++++.. .+....+..+.+.|-||||||.+...+-..+ ....++++|.++.+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5688998888888876653 1234556689999999999999988775544 224478888764321
Q ss_pred -Hhh-----------hh-HHHHHHHHHH-HHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005066 297 -FVG-----------VG-ARRVRDLFSA-AKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 361 (715)
Q Consensus 297 -~vg-----------~~-~~~vr~lF~~-A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~Vi 361 (715)
|.+ .+ .......|.. .... .+-++++||+|.|+.+. +.++..|..+ .. ..+..++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~~vLy~lFew-p~-lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------QTVLYTLFEW-PK-LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------cceeeeehhc-cc-CCcceee
Confidence 111 11 1122233332 2222 36899999999997443 2233333322 21 2457899
Q ss_pred EEeecCCCCcccccccC----CCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc--cHHHHHhcCCCCCHHHHH---H
Q 005066 362 VIAATNFPESLDKALVR----PGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV--DLMIIARGTPGFSGADLA---N 432 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlR----pgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv--dl~~la~~t~G~sgadI~---~ 432 (715)
+|+..|..+.-|-.|.| .+--...+.|++++.++..+||+..+......... .+...|+...|.|| |++ .
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHH
Confidence 99999988765544432 12233467999999999999999999876544433 35667888887765 555 6
Q ss_pred HHHHHHHHHHHcC
Q 005066 433 LVNIAALKAAMDG 445 (715)
Q Consensus 433 lv~~A~~~A~~~~ 445 (715)
+|+.|..++..+.
T Consensus 371 v~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 371 VCRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 7787777776654
No 214
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.79 E-value=5.3e-08 Score=109.98 Aligned_cols=205 Identities=23% Similarity=0.311 Sum_probs=122.2
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v 298 (715)
.+.+++|.+.....+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 456788888776666554443322 23479999999999999999997764 68999999998754321
Q ss_pred -----hhhHH-------HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------C
Q 005066 299 -----GVGAR-------RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------N 357 (715)
Q Consensus 299 -----g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~ 357 (715)
|.... .....|.. ...++|||||||.+. ... ...|+..++. +.. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~--------~~~---q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMP--------LVL---QAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCC--------HHH---HHHHHHHHhcCcEEeCCCCceee
Confidence 10000 00111222 234699999999884 122 3444444432 111 1
Q ss_pred CCEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc----C-Cccc---HHHH
Q 005066 358 EGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVD---LMII 418 (715)
Q Consensus 358 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~~~----~-~dvd---l~~l 418 (715)
.++.||++||..-. .+.+.|+|.. .+.+..|+..+|.+ ++.+++.+... . ..++ +..|
T Consensus 277 ~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 34788999885421 2222333332 45677788777754 45555554321 1 1233 3456
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
..+...-+.++|+++++.|...+ ....|+.+|+..
T Consensus 354 ~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred HcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 66665567889999998877653 345788777753
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.75 E-value=4.5e-09 Score=98.44 Aligned_cols=109 Identities=30% Similarity=0.411 Sum_probs=57.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc-chh-hhHhhhhHHHHH-HHHHHHHhCC---CeEEEEcCchhhcCCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS-EFE-EMFVGVGARRVR-DLFSAAKKRS---PCIIFIDEIDAIGGSR 332 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s-~~~-~~~vg~~~~~vr-~lF~~A~~~~---P~ILfIDEID~l~~~r 332 (715)
+|||.|+||+|||++|+++|+.++..|..+.+. ++. +...|...-... ..|.. ... ..|+++|||+...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrap--- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAP--- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCC---
Confidence 589999999999999999999999999988764 332 222222100000 00000 011 1599999999763
Q ss_pred CCCchHHHHHHHHHHHHHhhc---------cccCCCEEEEeecCCCC-----cccccccCCCCc
Q 005066 333 NPKDQQYMKMTLNQLLVELDG---------FKQNEGIIVIAATNFPE-----SLDKALVRPGRF 382 (715)
Q Consensus 333 ~~~~~~~~~~~l~~LL~~Ld~---------~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRF 382 (715)
.++...||..|.. +.-...++||||.|+.+ .|+++++. ||
T Consensus 76 --------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 --------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3445555555532 33456799999999876 47777775 66
No 216
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=3.3e-07 Score=95.97 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005066 369 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 447 (715)
Q Consensus 369 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~d-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 447 (715)
|..++-.|+. |. .+|...+++.++..+||+..+......-+ ..++.|......-|-+--.+|+..|.+.+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3456666654 54 36677889999999999999875422211 12333444433334455568999999999999999
Q ss_pred ccCHHHHHHHHHHHhc
Q 005066 448 AVTMADLEYAKDKIMM 463 (715)
Q Consensus 448 ~It~edl~~A~~~i~~ 463 (715)
.+..+|++.+..-.+.
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999876543
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.75 E-value=6.4e-08 Score=113.25 Aligned_cols=100 Identities=27% Similarity=0.325 Sum_probs=63.5
Q ss_pred CEEEEeecCCC--CcccccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhhhhcc---CCcccHHH---HHh---c
Q 005066 359 GIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMSKVLK---ADDVDLMI---IAR---G 421 (715)
Q Consensus 359 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~~ILk~~l~~~~~---~~dvdl~~---la~---~ 421 (715)
++.||+++|+. ..+||.|.. ||. ..+.|.. + +.+.+..+++...+.... ...++-.. |.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889998875 457888877 774 3344432 2 345555666544432211 22333222 211 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005066 422 TPG------FSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 460 (715)
Q Consensus 422 t~G------~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 460 (715)
..| +.-++|.+++++|...|..++++.|+.+|+..|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 346899999999999999999999999999988754
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.7e-07 Score=101.43 Aligned_cols=134 Identities=20% Similarity=0.279 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC---------------------eEEe--eccchhhh-HhhhhHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---------------------FFSC--SGSEFEEM-FVGVGARRVRDL 308 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~---------------------fi~i--s~s~~~~~-~vg~~~~~vr~l 308 (715)
.++.|..+||+||+|+||+++|.++|..+-+. |+.+ ....-..+ ....+...+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 46778899999999999999999999877321 1111 00000000 001234566777
Q ss_pred HHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccc
Q 005066 309 FSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 384 (715)
Q Consensus 309 F~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 384 (715)
.+.+... .--|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.|.|.+++ |..
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq- 165 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ- 165 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-
Confidence 6655332 2369999999988 34567899998884 55677888888999999999987 874
Q ss_pred ccccCCCCHHHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~ 402 (715)
.+.|++|+.++..+.|..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 789999999887777654
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.70 E-value=5.9e-08 Score=104.61 Aligned_cols=133 Identities=24% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCCccCCCcH-HHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 220 NTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 220 ~~~f~dv~G~d-~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
..+|+++...+ +....+.....|+.+. .. ...++|++|+||||||||+|+.|+|+++ |.++..++..+|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35677665433 2323333334444332 11 2345799999999999999999999998 78888888887765
Q ss_pred hHhhh-hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHH-HHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 296 MFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMK-MTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 296 ~~vg~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~-~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
.+... ....+...++..+ ...+|+||||..-. ...+.. .++..++.. +...+..+|.|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~------~s~~~~~~ll~~Il~~----R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ------MSSWVRDEVLGVILQY----RMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc------ccHHHHHHHHHHHHHH----HHHCCCeEEEECCCC
Confidence 53221 1112334444433 45699999997542 222332 334444321 222456778899865
No 220
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.70 E-value=7.3e-08 Score=102.23 Aligned_cols=168 Identities=22% Similarity=0.299 Sum_probs=85.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-C--eEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-P--FFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-~--fi~is~s~~~~ 295 (715)
+++.|.++.-.-.--.....+++.+-. ..+.+||+||+|||||++++.+-..+.- . ...++++....
T Consensus 5 ~~~~~~~~~VpT~dt~r~~~ll~~l~~----------~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt 74 (272)
T PF12775_consen 5 PEMPFNEILVPTVDTVRYSYLLDLLLS----------NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT 74 (272)
T ss_dssp --------T---HHHHHHHHHHHHHHH----------CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH
T ss_pred cccccceEEeCcHHHHHHHHHHHHHHH----------cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC
Confidence 345566655443333344555554221 2348999999999999999998776642 2 22344433221
Q ss_pred hHhhhhHHHHHHHHHHH-----------HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--------
Q 005066 296 MFVGVGARRVRDLFSAA-----------KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------- 356 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A-----------~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~-------- 356 (715)
...++.+.+.. ...+.+|+||||++.-... ..+.......+.+++.. .|+..
T Consensus 75 ------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d--~ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~ 145 (272)
T PF12775_consen 75 ------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPD--KYGTQPPIELLRQLIDY-GGFYDRKKLEWKS 145 (272)
T ss_dssp ------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHC-SEEECTTTTEEEE
T ss_pred ------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCC--CCCCcCHHHHHHHHHHh-cCcccCCCcEEEE
Confidence 12222222111 1234489999999854321 11222223344444432 23222
Q ss_pred CCCEEEEeecCCCC---cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc
Q 005066 357 NEGIIVIAATNFPE---SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL 408 (715)
Q Consensus 357 ~~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~ 408 (715)
-.++.+|+++|.+. .+++.|+| .|. .+.++.|+.+....|+..++....
T Consensus 146 i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 146 IEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp ECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHHHHHT
T ss_pred EeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHHhhhc
Confidence 23688899988543 47777776 563 778999999999999888887543
No 221
>PRK08181 transposase; Validated
Probab=98.69 E-value=1e-07 Score=100.90 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh-hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR 332 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 332 (715)
..+++|+||||||||+|+.+++.++ |..+++++..++...+... ........+... ..+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 3589999999999999999999765 7788888888887764321 112233344443 34579999999876422
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 333 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 333 ~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
......+.+++...- .. + -+|.|||.+
T Consensus 183 -----~~~~~~Lf~lin~R~---~~-~-s~IiTSN~~ 209 (269)
T PRK08181 183 -----QAETSVLFELISARY---ER-R-SILITANQP 209 (269)
T ss_pred -----HHHHHHHHHHHHHHH---hC-C-CEEEEcCCC
Confidence 233445555554321 12 2 466777765
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2e-07 Score=101.02 Aligned_cols=131 Identities=15% Similarity=0.265 Sum_probs=96.2
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------------------------eEEeeccchhhhHhhhhHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDL 308 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------------------fi~is~s~~~~~~vg~~~~~vr~l 308 (715)
.++.|.++||+||+|+||+++|+++|+.+-+. |+.+...+ .+ ..+...+|++
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l 95 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREI 95 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHH
Confidence 35678899999999999999999999987331 11111100 00 1234566766
Q ss_pred HHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccc
Q 005066 309 FSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 384 (715)
Q Consensus 309 F~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 384 (715)
-+.+.. ...-|++||++|.+ .....|.||..|+. +..++++|.+|+.++.|.|.+++ |..
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 555432 33469999999988 34567899999984 67788999999999999999987 774
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMESH 403 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~~ 403 (715)
.+.|++|+.++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7899999999888777654
No 223
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.67 E-value=1.2e-07 Score=107.28 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=120.6
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhh
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVG 299 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg 299 (715)
+.+++|.++...++.+.+..+. ..+..+++.|++||||+++|+++.... +.||+.++|..+.+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4568888887776665554322 223479999999999999999998764 679999999887543221
Q ss_pred hhH-HHHHHHHH--------HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc------ccCCCEEEEe
Q 005066 300 VGA-RRVRDLFS--------AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF------KQNEGIIVIA 364 (715)
Q Consensus 300 ~~~-~~vr~lF~--------~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~------~~~~~ViVIa 364 (715)
... ...+..|. ......++.|||||||.+. ...+..+..++..-... ....++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 000 00000000 0112345799999999884 22333333333321100 0112567888
Q ss_pred ecCCCC-------cccccccCCCCcccccccCCCCHH----HHHHHHHHHhhhhccC-----Cccc---HHHHHhcCCCC
Q 005066 365 ATNFPE-------SLDKALVRPGRFDRHIVVPNPDVE----GRRQIMESHMSKVLKA-----DDVD---LMIIARGTPGF 425 (715)
Q Consensus 365 aTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~----eR~~ILk~~l~~~~~~-----~dvd---l~~la~~t~G~ 425 (715)
+|+..- .+.+.|.. |+. .+.+..|... +...++++++...... ..++ +..|..+..--
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 351 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG 351 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 887542 22223332 333 2344445444 4455666666543211 1233 34455555445
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 426 SGADLANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 426 sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.++|+++++.++..+ ....|+.+|+...+
T Consensus 352 NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 352 NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 6789999998887655 34678888886544
No 224
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.67 E-value=8.1e-08 Score=111.54 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=127.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccchhhhHhhhh--HHHH--------HHHHHHHHhCCCeEEEEcCc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVG--ARRV--------RDLFSAAKKRSPCIIFIDEI 325 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~~~~~vg~~--~~~v--------r~lF~~A~~~~P~ILfIDEI 325 (715)
.||||.|++|||||+++++++.-+. .||+.+..+.-.+..+|.. +..+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 4899999999999999999999985 5998887776666666643 1111 1222222 2369999999
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHhhc-----------cccCCCEEEEeecCCC---CcccccccCCCCcccccccCCC
Q 005066 326 DAIGGSRNPKDQQYMKMTLNQLLVELDG-----------FKQNEGIIVIAATNFP---ESLDKALVRPGRFDRHIVVPNP 391 (715)
Q Consensus 326 D~l~~~r~~~~~~~~~~~l~~LL~~Ld~-----------~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~v~~P 391 (715)
..+ ...++..|+..|+. +.....+++|++.|.. ..|.++++- ||+.+|.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 877 34567777777753 1223568888875533 347888886 99999999887
Q ss_pred CHHHHH-------HHHHHH--hhhhccCCcccHHHHHhc--CCCC-CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005066 392 DVEGRR-------QIMESH--MSKVLKADDVDLMIIARG--TPGF-SGADLANLVNIAALKAAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 392 d~~eR~-------~ILk~~--l~~~~~~~dvdl~~la~~--t~G~-sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 459 (715)
+..+.. +|.+.. +.+... ++-.+..++.. ..|. |.+--..+++-|..+|..+++..|+.+|+..|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765432 233222 221111 11112222221 2354 6777778999999999999999999999999988
Q ss_pred HHhc
Q 005066 460 KIMM 463 (715)
Q Consensus 460 ~i~~ 463 (715)
-++.
T Consensus 249 lvL~ 252 (584)
T PRK13406 249 LVLA 252 (584)
T ss_pred HHHH
Confidence 7764
No 225
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.66 E-value=2.8e-08 Score=94.44 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=66.0
Q ss_pred CCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccchhhhHhhhhHH
Q 005066 227 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEMFVGVGAR 303 (715)
Q Consensus 227 ~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~~~~~vg~~~~ 303 (715)
+|.....+++++-+..+.. ....|||+|+|||||+++|++|....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 3566666777766665432 233799999999999999999998774 477777776644
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 304 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 304 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.++++.+ .++.|||+|||.+. ......|+..++... ..++.+|+++.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS-----------PEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred --HHHHHHc---CCCEEEECChHHCC-----------HHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 3344443 56799999999883 222333444444322 34556666655
No 226
>PRK15115 response regulator GlrR; Provisional
Probab=98.65 E-value=2.4e-07 Score=104.44 Aligned_cols=177 Identities=23% Similarity=0.329 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhhHHHHHHHHHHH---------------HhCCCeE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGARRVRDLFSAA---------------KKRSPCI 319 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A---------------~~~~P~I 319 (715)
..++|+|++|||||++|+++.... +.||+.++|..+...... ..+|... .....++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE------SELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH------HHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 369999999999999999998765 589999999987543221 1122111 1223469
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCCEEEEeecCCCCcccccccCCCCccc------
Q 005066 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEGIIVIAATNFPESLDKALVRPGRFDR------ 384 (715)
Q Consensus 320 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~-------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~------ 384 (715)
|||||||.+. ... ...|+..++.- . ...++.+|++|+.. ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~--------~~~---q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 232 LFLDEIGDMP--------APL---QVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EEEEccccCC--------HHH---HHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 9999999884 122 23344433321 1 11257888888853 3333322 45522
Q ss_pred -ccccCCCCHHHHHH----HHHHHhhhhcc----C-Cccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Q 005066 385 -HIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVD---LMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTM 451 (715)
Q Consensus 385 -~I~v~~Pd~~eR~~----ILk~~l~~~~~----~-~dvd---l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ 451 (715)
.+.+..|...+|.+ ++++++..... . ..++ +..|..+...-+.++|+++++.|+..+ ....|+.
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~ 374 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISD 374 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccCh
Confidence 34667788887754 45666654311 1 1123 455677775667889999998876543 3457887
Q ss_pred HHHHHH
Q 005066 452 ADLEYA 457 (715)
Q Consensus 452 edl~~A 457 (715)
+++...
T Consensus 375 ~~l~~~ 380 (444)
T PRK15115 375 ALVEQA 380 (444)
T ss_pred hhhhhh
Confidence 777543
No 227
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=4.9e-07 Score=98.64 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=95.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------------------------eEEeeccchhhhHhhhhHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDL 308 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------------------fi~is~s~~~~~~vg~~~~~vr~l 308 (715)
.++.|..+||+||+|+||+++|.++|..+-+. |..+....- . ...+...+|++
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l 96 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREV 96 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHH
Confidence 46778899999999999999999999987321 111111000 0 01234556666
Q ss_pred HHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccc
Q 005066 309 FSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 384 (715)
Q Consensus 309 F~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 384 (715)
-+.+. ....-|++||+.|.+ ....-|.||..|+. +..++++|..|+.++.|.|.+++ |..
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 65543 234479999999988 34567999999984 67788999999999999999987 775
Q ss_pred ccccCCCCHHHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~ 402 (715)
.+.|++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 689999998887776654
No 228
>PRK06526 transposase; Provisional
Probab=98.63 E-value=9.3e-08 Score=100.44 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhh-HHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG-ARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 331 (715)
.+.+++|+||||||||+||.+|+.++ |..+..++..++.+...... .......+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 34589999999999999999998876 67777777777766542211 11222223222 3467999999987632
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 332 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 332 r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
.......+.+++.... .. + .+|.+||.+
T Consensus 174 -----~~~~~~~L~~li~~r~---~~-~-s~IitSn~~ 201 (254)
T PRK06526 174 -----EPEAANLFFQLVSSRY---ER-A-SLIVTSNKP 201 (254)
T ss_pred -----CHHHHHHHHHHHHHHH---hc-C-CEEEEcCCC
Confidence 1233345555554321 11 2 366788865
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.61 E-value=3.7e-07 Score=96.72 Aligned_cols=212 Identities=19% Similarity=0.191 Sum_probs=128.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe------EEeecc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF------FSCSGS 291 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f------i~is~s 291 (715)
..+..+.||++.+++...+.++.+ . ...| +.|+|||||||||....+.|..+-.|. ..++.|
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~----------~-~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSG----------M-PGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhcc----------C-CCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 456778999999988776665422 1 2334 899999999999999999999987651 112222
Q ss_pred chhhhHhhhh-HHHHHHHHHHHHh-------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEE
Q 005066 292 EFEEMFVGVG-ARRVRDLFSAAKK-------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI 363 (715)
Q Consensus 292 ~~~~~~vg~~-~~~vr~lF~~A~~-------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVI 363 (715)
+-. |.. .+.-...|..++. ..+..+++||.|++. ....|.|-+.++.+.. ++.++
T Consensus 103 d~r----gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------~~AQnALRRviek~t~--n~rF~ 165 (360)
T KOG0990|consen 103 DDR----GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------RDAQNALRRVIEKYTA--NTRFA 165 (360)
T ss_pred Ccc----CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------HHHHHHHHHHHHHhcc--ceEEE
Confidence 211 111 1112234444442 256799999999883 3345555555665544 44555
Q ss_pred eecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 364 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 364 aaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
..+|++..+.|++.. ||. .+.|.+.+......++.++.+.....-..+ ...+++. +-+|++..+|.-...+.
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRVALNYLQSILK 238 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHHHHHHHHHHHH
Confidence 677999999999986 775 456777777777778888876433222111 2233433 44577766655443333
Q ss_pred HcC---------------CCccCHHHHHHHHHHHhccc
Q 005066 443 MDG---------------AKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 443 ~~~---------------~~~It~edl~~A~~~i~~g~ 465 (715)
.-. ...+...|+++.++.++.+.
T Consensus 239 ~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~ 276 (360)
T KOG0990|consen 239 KVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGE 276 (360)
T ss_pred HhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCc
Confidence 211 12333447777777665544
No 230
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5.9e-07 Score=97.23 Aligned_cols=131 Identities=19% Similarity=0.267 Sum_probs=94.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-----------------------eEEeeccchhhhHhhhhHHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-----------------------FFSCSGSEFEEMFVGVGARRVRDLF 309 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~-----------------------fi~is~s~~~~~~vg~~~~~vr~lF 309 (715)
..+.|..+||+||.|+||+.+|+++|..+-+. |+.+.... ..+ ..+...+|++-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHH
Confidence 46778899999999999999999999977321 22221110 000 01234566655
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccc
Q 005066 310 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 385 (715)
Q Consensus 310 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 385 (715)
+.+.. ...-|++||++|.+ ....-|.||..|+. +..++++|..|+.++.|-|.+++ |.. .
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 161 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-Q 161 (319)
T ss_pred HHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-e
Confidence 54432 33479999999988 34567899999984 66788999999999999999987 774 7
Q ss_pred cccCCCCHHHHHHHHHH
Q 005066 386 IVVPNPDVEGRRQIMES 402 (715)
Q Consensus 386 I~v~~Pd~~eR~~ILk~ 402 (715)
+.|++|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999888777654
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.55 E-value=5.2e-07 Score=91.21 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC---CeEEeec-cchhh----hH-------------h-----------------
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV---PFFSCSG-SEFEE----MF-------------V----------------- 298 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~---~fi~is~-s~~~~----~~-------------v----------------- 298 (715)
...++|+||.|+|||+|++.+.....- ..+++.. ..... .+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 347999999999999999999998832 2222221 11100 00 0
Q ss_pred hhhHHHHHHHHHHHHhCC-CeEEEEcCchhhc-CCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc----
Q 005066 299 GVGARRVRDLFSAAKKRS-PCIIFIDEIDAIG-GSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL---- 372 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~-~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L---- 372 (715)
......+..++....... ..||+|||++.+. ... . ....+..|...++......++.+|.+.......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 012344556666655433 4899999999997 211 1 122333444444443334454444333322211
Q ss_pred --cccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--CCcccHHHHHhcCCCCCHHHH
Q 005066 373 --DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--ADDVDLMIIARGTPGFSGADL 430 (715)
Q Consensus 373 --D~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~--~~dvdl~~la~~t~G~sgadI 430 (715)
...+. +|+.. +.+++.+.++..++++..++.... .++.++..+...+.| .|+-|
T Consensus 174 ~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l 231 (234)
T PF01637_consen 174 DDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYL 231 (234)
T ss_dssp -TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHH
T ss_pred cccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHH
Confidence 12222 37776 999999999999999998766511 144556666666655 34444
No 232
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.55 E-value=5.6e-07 Score=101.13 Aligned_cols=199 Identities=22% Similarity=0.303 Sum_probs=116.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG 301 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~ 301 (715)
.++|.......+.+.+.++. .....++++|.+||||+++|+++.... +.||+.++|+.+.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~- 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES- 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH-
Confidence 46666666555544443322 223479999999999999999997654 5799999999775432211
Q ss_pred HHHHHHHHHH---------------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--cc-------C
Q 005066 302 ARRVRDLFSA---------------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQ-------N 357 (715)
Q Consensus 302 ~~~vr~lF~~---------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~~-------~ 357 (715)
.+|.. .....+++|||||||.+.. .....|+..++.- .. .
T Consensus 209 -----~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 209 -----ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred -----HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH-----------HHHHHHHHHHccCcEEeCCCCceee
Confidence 11110 1123467999999998842 1223444444321 11 1
Q ss_pred CCEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc---C--Cccc---HHHH
Q 005066 358 EGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK---A--DDVD---LMII 418 (715)
Q Consensus 358 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~~~---~--~dvd---l~~l 418 (715)
.++.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+ ++++++.+... . ..++ +..|
T Consensus 273 ~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (441)
T PRK10365 273 VDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 (441)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 2467787776532 12223345532 45667777776654 56666654311 0 1122 3455
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005066 419 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 456 (715)
Q Consensus 419 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 456 (715)
..+...-+.++|.++++.+...+ ....|+.+|+..
T Consensus 350 ~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 350 IHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred HhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 66654456788888888776543 345688777754
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=4.9e-07 Score=98.34 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhh---HHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG---ARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 331 (715)
.+++|+||||||||+|+.++|+++ |..+++++..++...+.... .......+.... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999987 78889999888876543211 111122233332 34799999997653
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 332 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 332 r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
...+....+..++... .. .+-.+|.|||.+
T Consensus 260 ----~t~~~~~~Lf~iin~R---~~-~~k~tIiTSNl~ 289 (329)
T PRK06835 260 ----ITEFSKSELFNLINKR---LL-RQKKMIISTNLS 289 (329)
T ss_pred ----CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCC
Confidence 2233344444444432 11 223466677753
No 234
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.54 E-value=1.4e-06 Score=100.02 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=114.0
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe-eccchh--
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC-SGSEFE-- 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i-s~s~~~-- 294 (715)
..+.+.+||+-...-.++++.+++... .+....+-+||+||||||||++++.||+++|..+..- +...+.
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 456788999988777677776665311 1233345688899999999999999999998776653 222210
Q ss_pred ----hhHhhhh---------HHHHHHH-HHHHHh-----------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 295 ----EMFVGVG---------ARRVRDL-FSAAKK-----------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 295 ----~~~vg~~---------~~~vr~l-F~~A~~-----------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
..|.+.. .....++ +..++. ..+.||+|||+-.++... .......+.+++.
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRFREALRQYLR 161 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHHHHHHHHHHH
Confidence 1111110 0111111 111111 246799999998664321 1233333333332
Q ss_pred HhhccccCCCEEEEee-cC------CC--------CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-------
Q 005066 350 ELDGFKQNEGIIVIAA-TN------FP--------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV------- 407 (715)
Q Consensus 350 ~Ld~~~~~~~ViVIaa-TN------~p--------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~------- 407 (715)
. .....+++|.+ +. .. ..+++.++...++. +|.|.+-...-..+.|+..+...
T Consensus 162 ~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 162 S----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred c----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 1 12116666666 11 11 13455555433443 67887777766666666665433
Q ss_pred ccCCc-cc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 408 LKADD-VD-LMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 408 ~~~~d-vd-l~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
...++ .+ ++.|+..+. +||+..++.-...+.
T Consensus 237 ~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11111 22 556776654 599999986666665
No 235
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.52 E-value=7.4e-07 Score=104.13 Aligned_cols=314 Identities=22% Similarity=0.280 Sum_probs=164.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEee-ccchhhhHhhhhHHHHHHHH-----HHH---HhCCCeEEEEcCchhh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS-GSEFEEMFVGVGARRVRDLF-----SAA---KKRSPCIIFIDEIDAI 328 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is-~s~~~~~~vg~~~~~vr~lF-----~~A---~~~~P~ILfIDEID~l 328 (715)
-+|||.|.||||||.|.+.+++-+...++..- ++.- +|.++..+++-+ -.+ -...++|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 36999999999999999999998865544331 1111 122222222211 011 1234579999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC-------------cccccccCCCCccc
Q 005066 329 GGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDR 384 (715)
Q Consensus 329 ~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~ 384 (715)
-. ...+.+...|+.. .-+...-|+||+|... .|++.|++ |||.
T Consensus 396 ~~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 NE-----------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred Ch-----------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 31 1122333333321 1123466888999664 37788998 9998
Q ss_pred cccc-CCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 385 HIVV-PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 385 ~I~v-~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
.+.+ ..||.+.-..|.++.+..+.....-+..... ...+....+ ..+++.-..+|.+
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~-~~~~~~~~~-~~~lrkYI~YAR~-------------------- 520 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLD-GVDEVEERD-FELLRKYISYARK-------------------- 520 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHhccccccccccc-cccccccCc-HHHHHHHHHHHhc--------------------
Confidence 7755 6687776666666666554221111110000 000000000 1122222222211
Q ss_pred cccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHHHHHHhcHHH
Q 005066 464 GSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRV 543 (715)
Q Consensus 464 g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~i~v~LgGra 543 (715)
.....++++.++. |..+|..- |..... . . ....+..|..||++-|..+ .|
T Consensus 521 ---~v~P~lt~ea~e~---------l~~~Yv~~-----------Rk~~~~-~-~--~~~~~piT~RqLEsiiRLa---eA 570 (682)
T COG1241 521 ---NVTPVLTEEAREE---------LEDYYVEM-----------RKKSAL-V-E--EKRTIPITARQLESIIRLA---EA 570 (682)
T ss_pred ---cCCcccCHHHHHH---------HHHHHHHh-----------hhcccc-c-c--ccCcccccHHHHHHHHHHH---HH
Confidence 1113455543333 23333210 111111 0 0 1122456888999999776 55
Q ss_pred HHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005066 544 AEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDRAYNNAKTIL 623 (715)
Q Consensus 544 AEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~ra~~iL 623 (715)
--++-+.+ -|+ ..|...|-++......+.++.+.-|-+..+....+...+... . ...+..++. ++.
T Consensus 571 ~Ak~rLS~-~V~---~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~~~~~--~-~~~~~~~i~-------e~~ 636 (682)
T COG1241 571 HAKMRLSD-VVE---EEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSKSKRD--K-IEKVLDIIK-------ELV 636 (682)
T ss_pred HHhhhccC-CCC---HHHHHHHHHHHHHHHHHhhcCccCCceehhhhccCCcchhhh--h-HHHHHHHHH-------HHh
Confidence 55666654 344 799999999999999999999888888665444433333221 1 112222222 122
Q ss_pred HHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhh
Q 005066 624 TMHSKELHALANALLEHETLSGSQIKALLAQVNS 657 (715)
Q Consensus 624 ~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~~ 657 (715)
+++.. .+.+..-+.+-++..++++++.....
T Consensus 637 ~~~~~---~~~~~~~~~~g~~~~~~e~~l~~l~~ 667 (682)
T COG1241 637 ERSED---PVEEIIEEAEGISEKEVEEALEKLKK 667 (682)
T ss_pred hcccc---hHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 22222 22222223337888999988876543
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=6.7e-07 Score=97.25 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC-------------------------CeEEeeccch---hhh-HhhhhHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------------------PFFSCSGSEF---EEM-FVGVGARR 304 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------------------~fi~is~s~~---~~~-~vg~~~~~ 304 (715)
.+.|..+||+||+|+|||++|+.+|+.+.+ .|+.++...- ..+ ....+...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 478889999999999999999999998742 1233322110 000 00123456
Q ss_pred HHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCC
Q 005066 305 VRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPG 380 (715)
Q Consensus 305 vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 380 (715)
+|++.+.+.. ...-|++||+++.+- ....+.|+..++... .++.+|.+|+.++.+.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 7777766643 334699999999882 344566777777543 456677788888888888886
Q ss_pred CcccccccCCCCHHHHHHHHHH
Q 005066 381 RFDRHIVVPNPDVEGRRQIMES 402 (715)
Q Consensus 381 RFd~~I~v~~Pd~~eR~~ILk~ 402 (715)
|. ..+.|++|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 66 4789999999988777754
No 237
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=8.5e-07 Score=83.18 Aligned_cols=118 Identities=23% Similarity=0.242 Sum_probs=71.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK 335 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 335 (715)
+.++|+||+|+|||++++.++..+. ..++++++.+.......... +.+.|.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999999886 78888888776543211111 2233333222356899999999772
Q ss_pred chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc----cccccCCCCcccccccCCCCHHH
Q 005066 336 DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL----DKALVRPGRFDRHIVVPNPDVEG 395 (715)
Q Consensus 336 ~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L----D~aLlRpgRFd~~I~v~~Pd~~e 395 (715)
.....+..+.. . ..++.||.|+.....+ ...+ +||.. .+++.+.+..|
T Consensus 75 ---~~~~~lk~l~d---~---~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ---DWEDALKFLVD---N---GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ---cHHHHHHHHHH---h---ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 23344444443 1 1233444444333222 2223 35775 67777777655
No 238
>PRK06921 hypothetical protein; Provisional
Probab=98.49 E-value=1.7e-06 Score=91.68 Aligned_cols=69 Identities=26% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDA 327 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~ 327 (715)
...+++|+||||||||+|+.++|+++ +..+++++..++...+... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999986 5677888876655432211 11122222222 3457999999953
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.49 E-value=8.6e-07 Score=93.20 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhhHH-HHHH-HHHHHHhCCCeEEEEcCchhh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGAR-RVRD-LFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~~~-~vr~-lF~~A~~~~P~ILfIDEID~l 328 (715)
.+.+++|+||||||||+||-|+++++ |.+++.++..++....-..... .... +.... ....+|+||||...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 45699999999999999999999987 7899999998887653321111 1111 11112 34469999999765
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.47 E-value=2e-07 Score=92.80 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh-hHHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 331 (715)
.+.|++|+||||||||+||.+++.++ |.++.+++.+++.+.+... ........+.... ...+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee--
Confidence 45699999999999999999999877 8899999998887764321 1112334444443 34699999996431
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 332 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 332 r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
...+....+.+++..- ..+ + .+|.|||..
T Consensus 122 ----~~~~~~~~l~~ii~~R---~~~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 ----LSEWEAELLFEIIDER---YER-K-PTIITSNLS 150 (178)
T ss_dssp ------HHHHHCTHHHHHHH---HHT---EEEEEESS-
T ss_pred ----ecccccccchhhhhHh---hcc-c-CeEeeCCCc
Confidence 2233334444554432 222 2 455688854
No 241
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=105.19 Aligned_cols=128 Identities=31% Similarity=0.393 Sum_probs=91.6
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCC-CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh---
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGG-KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~-~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~--- 296 (715)
+.|+|++++...+-+.|..-+.. ++- +++--+||.||.|+|||-||+++|..+ .-.|+.++.++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 35899999998888888753321 011 344569999999999999999999988 467899999976551
Q ss_pred ------HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------CCCEE
Q 005066 297 ------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------NEGII 361 (715)
Q Consensus 297 ------~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~---------~~~Vi 361 (715)
|+| ......+.+..+....+||+|||||.- ...+++.|+..+|..+- -.++|
T Consensus 637 igsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 637 IGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred cCCCccccc--chhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 222 233446666777777799999999954 33456666666665432 23699
Q ss_pred EEeecCCC
Q 005066 362 VIAATNFP 369 (715)
Q Consensus 362 VIaaTN~p 369 (715)
||+|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 99999954
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=98.45 E-value=5.2e-07 Score=95.09 Aligned_cols=71 Identities=27% Similarity=0.427 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh-hHHHHHHHHHHHHhCCCeEEEEcCchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~-~~~~vr~lF~~A~~~~P~ILfIDEID~l 328 (715)
..+++|+||||||||+|+.+++..+ |..+.++++.++...+... ....+...|... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4589999999999999999997764 7778888877776543221 112234445443 345689999999865
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.39 E-value=2.1e-06 Score=86.87 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=68.5
Q ss_pred hCCCCCCe--EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-Hhhh----------------------hHH
Q 005066 252 LGGKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FVGV----------------------GAR 303 (715)
Q Consensus 252 lg~~~pkg--vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-~vg~----------------------~~~ 303 (715)
+++-.|+| ++++||||+|||+++..++... +.+.++++...+... +... ...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 34444544 8899999999999999988654 667888887653211 1110 011
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 304 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 304 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.+..+...+....+++|+||-|..+.............+.+..++..|..+....++.+|.+..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 2333444455567899999999998642211121122223444444455554566777777654
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=1.8e-05 Score=89.17 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=89.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec-c------------chhhhHhhhhHHHHHHHHHHH------------
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG-S------------EFEEMFVGVGARRVRDLFSAA------------ 312 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~-s------------~~~~~~vg~~~~~vr~lF~~A------------ 312 (715)
+-+||+||+|||||+.++.|+.++|+.++.-+. - .+........-..+......+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 358899999999999999999999987765441 1 111101111111111111111
Q ss_pred HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCC------CCccccc
Q 005066 313 KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP------GRFDRHI 386 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRFd~~I 386 (715)
....+.+|+|||+-..+... ....+..+|..+-.....+-|++|.-++.++..++..+.+ .|++ +|
T Consensus 191 ~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~I 262 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NI 262 (634)
T ss_pred cccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eE
Confidence 11345699999997664321 2233344444333222233233333333333333332221 1443 56
Q ss_pred ccCCCCHHHHHHHHHHHhhhhcc--C-----CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 387 VVPNPDVEGRRQIMESHMSKVLK--A-----DDVDLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 387 ~v~~Pd~~eR~~ILk~~l~~~~~--~-----~dvdl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
.|.+-...-..+.|+.++..... . ....++.++... ++||+..++.-.+.+
T Consensus 263 sFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 263 SFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred eecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 77666666666666666543211 1 122244455444 569999999877775
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.30 E-value=0.0001 Score=84.84 Aligned_cols=135 Identities=27% Similarity=0.366 Sum_probs=77.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHH-----HHHHHHHHH---HhCCCeEEEEcCchhhc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR-----RVRDLFSAA---KKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~-----~vr~lF~~A---~~~~P~ILfIDEID~l~ 329 (715)
-+|||+|.||||||.+.+.+++-+..-.+ +++..- .-+|.++. .-+++.-+. -....+|-.|||+|++.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGs--SavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGS--SAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCcc--chhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 46999999999999999999987754332 222100 00111110 011111111 01234688899999983
Q ss_pred CCCCCCchHHHHHHHHHHHHH------hhcc--ccCCCEEEEeecCCCC-------------cccccccCCCCccccc-c
Q 005066 330 GSRNPKDQQYMKMTLNQLLVE------LDGF--KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDRHI-V 387 (715)
Q Consensus 330 ~~r~~~~~~~~~~~l~~LL~~------Ld~~--~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I-~ 387 (715)
.+ .+.+|.+.+.+ .-|+ .-+...-|||+.|... .|+|.|++ |||.++ -
T Consensus 540 dS--------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyll 609 (804)
T KOG0478|consen 540 DS--------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLL 609 (804)
T ss_pred HH--------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEE
Confidence 21 23333333322 1121 2234567899999443 47899998 999776 4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 005066 388 VPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~ 405 (715)
++.||...-+.|..+...
T Consensus 610 lD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 610 LDKPDERSDRRLADHIVA 627 (804)
T ss_pred ecCcchhHHHHHHHHHHH
Confidence 488888755556555544
No 246
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.29 E-value=2.4e-06 Score=94.16 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC-CeEEeeccchhhhHhhh------hHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-PFFSCSGSEFEEMFVGV------GARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~-~fi~is~s~~~~~~vg~------~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
...|+|++|+||+|+|||+|.-.+...+.. .-..+....|....-.. ...-+..+-+.. .....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457999999999999999999999988855 22233333333221110 011122222222 1223499999986
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC-CcccccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005066 327 AIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 327 ~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p-~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
.- +.. ...++..|+..+- ..++++|+|+|++ +.|-+ +.+.+....| -.++|+.++.
T Consensus 138 V~----Dia----DAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp------~I~~l~~~~~ 194 (362)
T PF03969_consen 138 VT----DIA----DAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLP------FIDLLKRRCD 194 (362)
T ss_pred cc----chh----HHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHH------HHHHHHhceE
Confidence 32 111 2334555555442 3789999999965 33322 2222222222 2557788887
Q ss_pred hhccCCcccHHHH
Q 005066 406 KVLKADDVDLMII 418 (715)
Q Consensus 406 ~~~~~~dvdl~~l 418 (715)
-+.++..+|+...
T Consensus 195 vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 195 VVELDGGVDYRRR 207 (362)
T ss_pred EEEecCCCchhhh
Confidence 7777788887653
No 247
>PF05729 NACHT: NACHT domain
Probab=98.27 E-value=9.2e-06 Score=77.84 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=75.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC--------CC-eEEeeccchhhh--------Hh----hhhHHHHHHHH-HHHHhCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG--------VP-FFSCSGSEFEEM--------FV----GVGARRVRDLF-SAAKKRS 316 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~--------~~-fi~is~s~~~~~--------~v----g~~~~~vr~lF-~~A~~~~ 316 (715)
-++|+|+||+|||++++.++..+. .+ ++.+++.++... ++ ......+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998761 12 233333332221 00 01111112212 2234456
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC--cccccccCCCCcccccccCCCCHH
Q 005066 317 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDVE 394 (715)
Q Consensus 317 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~~ 394 (715)
..+|+||-+|.+...............+.+++.. ....++.+|.++.... .+...+.. . ..+.+++.+.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHH
Confidence 7899999999986532221111222333334332 1233444444443222 22222222 1 45788999999
Q ss_pred HHHHHHHHHhhh
Q 005066 395 GRRQIMESHMSK 406 (715)
Q Consensus 395 eR~~ILk~~l~~ 406 (715)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
No 248
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=4.3e-06 Score=77.61 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh--------CCCeEEeeccchhh--hHh-------h-------hhHHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA--------GVPFFSCSGSEFEE--MFV-------G-------VGARRVRDLFSAA 312 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el--------~~~fi~is~s~~~~--~~v-------g-------~~~~~vr~lF~~A 312 (715)
.+.++++||||+|||++++.++..+ ..+++.+++..... .+. + ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3468999999999999999999987 78888887754431 111 0 1122223334444
Q ss_pred HhCCCeEEEEcCchhhc
Q 005066 313 KKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~ 329 (715)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44544699999999874
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.25 E-value=5.6e-07 Score=98.18 Aligned_cols=187 Identities=24% Similarity=0.270 Sum_probs=101.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc-----hhhhHh---hhhHHHH-HHHHHHHHhCCCeEEEEcCchhh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE-----FEEMFV---GVGARRV-RDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~-----~~~~~v---g~~~~~v-r~lF~~A~~~~P~ILfIDEID~l 328 (715)
-++||+|.||||||.|.+.++.-..... ++++.. +..... ..+.-.+ ...+-. ...+|++|||+|.+
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvl---ad~GiccIDe~dk~ 133 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVL---ADGGICCIDEFDKM 133 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HHHH---CTTSEEEECTTTT-
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCchhc---ccCceeeecccccc
Confidence 3799999999999999999876554333 333221 100000 0000000 011222 23469999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCC-------------cccccccCCCCccc
Q 005066 329 GGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDR 384 (715)
Q Consensus 329 ~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~ 384 (715)
-. .....|+..|+.- .-+...-|+|++|+.. .+++.|++ |||.
T Consensus 134 ~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDL 200 (331)
T PF00493_consen 134 KE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDL 200 (331)
T ss_dssp -C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SE
T ss_pred cc-----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCE
Confidence 31 1234455555431 1134578999999664 37788887 9998
Q ss_pred cccc-CCCCHHHHHHHHHHHhhhhccC------------Cccc------HHHHHh-------------------------
Q 005066 385 HIVV-PNPDVEGRRQIMESHMSKVLKA------------DDVD------LMIIAR------------------------- 420 (715)
Q Consensus 385 ~I~v-~~Pd~~eR~~ILk~~l~~~~~~------------~dvd------l~~la~------------------------- 420 (715)
.+.+ +.|+.+.-..|.++.+...... ..++ +-..++
T Consensus 201 if~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~ 280 (331)
T PF00493_consen 201 IFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKE 280 (331)
T ss_dssp EECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHC
T ss_pred EEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccc
Confidence 8765 7777666666666555432111 0111 011111
Q ss_pred -----cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 421 -----GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 421 -----~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
.....+.+.|+.+++-|..+|..+-+..|+.+|+..|++-+
T Consensus 281 ~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 281 SKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 11235667888999999999999999999999999998643
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=7e-06 Score=78.07 Aligned_cols=108 Identities=23% Similarity=0.279 Sum_probs=63.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh----------------------hh--hHHHHHHHHHHH
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV----------------------GV--GARRVRDLFSAA 312 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v----------------------g~--~~~~vr~lF~~A 312 (715)
++|+||||+|||+++..++..+ +.++++++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 56777776654322110 00 011112234445
Q ss_pred HhCCCeEEEEcCchhhcCCCC---CCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 313 KKRSPCIIFIDEIDAIGGSRN---PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~~~r~---~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
....|.+|+|||+..+..... ..........+..|+..+ ...++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 667889999999998864321 111223334444444333 3346677777665543
No 251
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.23 E-value=5.2e-06 Score=89.12 Aligned_cols=209 Identities=22% Similarity=0.311 Sum_probs=124.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
....|+.+++.....+.+.+-... +.-+. -.+||.|..||||-++||+.-... ..||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k------~AmlD----APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK------LAMLD----APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH------hhccC----CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 455688999988765555443322 22222 258999999999999999985544 68999999998865
Q ss_pred hHh-----hh--hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh-c-cccC-------CC
Q 005066 296 MFV-----GV--GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD-G-FKQN-------EG 359 (715)
Q Consensus 296 ~~v-----g~--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld-~-~~~~-------~~ 359 (715)
... |. +.+.-..+|+.|.. +.+|+|||..+. ..+ ...||..+. | |+.- -+
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS--------p~l---QaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS--------PRL---QAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC--------HHH---HHHHHHHhcCCceeecCCcceEEEE
Confidence 422 21 12344567777643 489999998763 223 344555443 2 2221 25
Q ss_pred EEEEeecCCC--CcccccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhh----c-cCCccc---HHHHHhcC
Q 005066 360 IIVIAATNFP--ESLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKV----L-KADDVD---LMIIARGT 422 (715)
Q Consensus 360 ViVIaaTN~p--~~LD~aLlRpg---RFd~~I~v~~Pd~~eR~~----ILk~~l~~~----~-~~~dvd---l~~la~~t 422 (715)
|-||++|..+ +.....-.|.+ |+. ++.+..|...+|.. +.+.++.+. . ..+..+ +..+.++.
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~ 413 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYA 413 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcC
Confidence 8999999754 22333333322 332 55667777777654 344444332 1 122233 33455555
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 423 PGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 423 ~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
.--+.+++.|.+-+|+... ....++.+||.
T Consensus 414 WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 414 WPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred CCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 5456788888877776554 33566666664
No 252
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=2.8e-05 Score=81.26 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=114.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-C--CCeEEe-------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-G--VPFFSC------- 288 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-~--~~fi~i------- 288 (715)
.+.+|+.+.+.++....|+.+.. ..+.| ++|+|||+|+||-|.+.++-+++ | ++=..+
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~-----------~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSS-----------TGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcc-----------cCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 45678889999988888886543 12223 79999999999999999999887 2 211111
Q ss_pred -----------eccchhhh---Hhhhh-HHHHHHHHHHHHhCC---------CeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005066 289 -----------SGSEFEEM---FVGVG-ARRVRDLFSAAKKRS---------PCIIFIDEIDAIGGSRNPKDQQYMKMTL 344 (715)
Q Consensus 289 -----------s~s~~~~~---~vg~~-~~~vr~lF~~A~~~~---------P~ILfIDEID~l~~~r~~~~~~~~~~~l 344 (715)
+.....+. -.|.. .-.+.++.+.....+ -.+++|-|.|.+. ....
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~dAQ 144 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------RDAQ 144 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------HHHH
Confidence 11111110 11111 123455555543222 2689999999884 3334
Q ss_pred HHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-HHHHHhcCC
Q 005066 345 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTP 423 (715)
Q Consensus 345 ~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-l~~la~~t~ 423 (715)
..|=+.|+.+. +++.+|..+|....+-+++++ |. ..|.+|.|+.++...++...+++....-..+ +..|++.+.
T Consensus 145 ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 145 HALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 45555666554 455667777888888888886 55 3679999999999999999998765543333 345666654
Q ss_pred C
Q 005066 424 G 424 (715)
Q Consensus 424 G 424 (715)
|
T Consensus 220 ~ 220 (351)
T KOG2035|consen 220 R 220 (351)
T ss_pred c
Confidence 4
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.18 E-value=3.8e-06 Score=95.61 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=124.8
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhC--CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhh
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLG--GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGV 300 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg--~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~ 300 (715)
|-.|.|.+.+|.-+.=. .+--..+...-| .+-.-+|+|+|.||||||-+.+++++-+....+.. +..-.. .|.
T Consensus 344 ~PsIyGhe~VK~GilL~--LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaSSa--AGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLS--LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKASSA--AGL 418 (764)
T ss_pred CccccchHHHHhhHHHH--HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Cccccc--ccc
Confidence 55688998888776421 111111111111 11223699999999999999999998776554432 211100 011
Q ss_pred hHHHHHH--HHH---HH---HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc---------c--ccCCCEE
Q 005066 301 GARRVRD--LFS---AA---KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG---------F--KQNEGII 361 (715)
Q Consensus 301 ~~~~vr~--lF~---~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~---------~--~~~~~Vi 361 (715)
++..+++ -++ +| .-...+|-.|||+|.+..+. + ..++..|+. . .-+...-
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d----q-------vAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD----Q-------VAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHh----H-------HHHHHHHHhheehheecceEEeecchhh
Confidence 1111110 000 00 01223588999999984322 1 122223321 1 1233467
Q ss_pred EEeecCCCC-------------cccccccCCCCccccc-ccCCCCHHHHHHHHHHHhhhhccC-----------------
Q 005066 362 VIAATNFPE-------------SLDKALVRPGRFDRHI-VVPNPDVEGRRQIMESHMSKVLKA----------------- 410 (715)
Q Consensus 362 VIaaTN~p~-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~~ILk~~l~~~~~~----------------- 410 (715)
||||+|+.. .+++++++ |||..+ -++.|++..-..|-++.+.....-
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 889999663 37788887 999765 458888876666665555422110
Q ss_pred ---------Cccc----------HHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 411 ---------DDVD----------LMII--------ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 411 ---------~dvd----------l~~l--------a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
+-+. +..+ .+.+.+.|.++|+.+++.+-.+|..+-++.||.+|+++|.+-+
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 0000 0001 1112356778999999888888888888889999998887744
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.17 E-value=5.3e-05 Score=78.64 Aligned_cols=183 Identities=21% Similarity=0.266 Sum_probs=114.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC---CeEEeeccch-----hhhHhhh------------hHHHHHHHHHHHHh-CCCe
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGV---PFFSCSGSEF-----EEMFVGV------------GARRVRDLFSAAKK-RSPC 318 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~---~fi~is~s~~-----~~~~vg~------------~~~~vr~lF~~A~~-~~P~ 318 (715)
+.++|+-|||||++.|++...++- ..++++...+ .+.++.+ .+..-+.+....++ ..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 668999999999999988877742 2334443332 2222211 11222334444333 4568
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCC------CCcccccccCCCC
Q 005066 319 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP------GRFDRHIVVPNPD 392 (715)
Q Consensus 319 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRFd~~I~v~~Pd 392 (715)
++++||.+.+... ....+.-|.+.-+++...-.++.|+=. .|.+.+++| -|++-.|++++.+
T Consensus 134 ~l~vdEah~L~~~--------~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 134 VLMVDEAHDLNDS--------ALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred EEeehhHhhhChh--------HHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEecCCcC
Confidence 9999999988421 112222222222333333456666643 234433322 1787668999999
Q ss_pred HHHHHHHHHHHhhhhccCCc----ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 393 VEGRRQIMESHMSKVLKADD----VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 393 ~~eR~~ILk~~l~~~~~~~d----vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
.++-...++++++......+ -.+..+...+.| .|+-|.++|..|...|...+.+.|+...++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99999999999986533322 234556667776 789999999999999999898888876654
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.15 E-value=3e-06 Score=97.04 Aligned_cols=183 Identities=27% Similarity=0.345 Sum_probs=104.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHH--hCCCeEEeeccchhhhHhhhh-HHHHHHHHHHHHh---------CCCeEEEEcCch
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE--AGVPFFSCSGSEFEEMFVGVG-ARRVRDLFSAAKK---------RSPCIIFIDEID 326 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e--l~~~fi~is~s~~~~~~vg~~-~~~vr~lF~~A~~---------~~P~ILfIDEID 326 (715)
.+||.|.|||||-.|+|++-.. ...||+.++|..+.+..++.- ...+...|.-|+. .....+|+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 6999999999999999999554 568999999987765432210 1111122222211 123699999998
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHH-----hhccccCCCEEEEeecCCCCcccccccCCCCcccc-------cccCCCCHH
Q 005066 327 AIGGSRNPKDQQYMKMTLNQLLVE-----LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH-------IVVPNPDVE 394 (715)
Q Consensus 327 ~l~~~r~~~~~~~~~~~l~~LL~~-----Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~-------I~v~~Pd~~ 394 (715)
.+. -.++..+...|.+ +.+-...-.|.||+||+++= ..|.+.|||-.- +.|.+|...
T Consensus 418 d~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr 486 (606)
T COG3284 418 DMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLR 486 (606)
T ss_pred hch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchh
Confidence 773 2234334444433 22223233588999998652 245666777543 355667777
Q ss_pred HHHH---HHHHHhhhhcc-CCcccH---HHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 395 GRRQ---IMESHMSKVLK-ADDVDL---MIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 395 eR~~---ILk~~l~~~~~-~~dvdl---~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
+|.+ .|.+++.+... .-.+|- ..|..+-.--+.++|.|++..++..+ +...|...|+.
T Consensus 487 ~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp 551 (606)
T COG3284 487 ERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLP 551 (606)
T ss_pred cccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCC
Confidence 7654 44444443322 122332 22333322236788888887766554 33344444443
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.9e-05 Score=84.32 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=83.5
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec--------cchhhhH-hh----hhHHHHHHHHHHHHh----C
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG--------SEFEEMF-VG----VGARRVRDLFSAAKK----R 315 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~--------s~~~~~~-vg----~~~~~vr~lF~~A~~----~ 315 (715)
.++.|..+||+||+|+||+.+|.++|..+-+.--.-+| .++..-+ .+ .+...+|++.+.+.. .
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 46778899999999999999999999987432100011 0110000 01 124456666555532 3
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCC
Q 005066 316 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 391 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~P 391 (715)
..-|++||++|.+ ....-|.||..|+. +.+++++|..|+.++.|.|.+++ |.. .+.|+++
T Consensus 95 ~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM-----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhc-----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 3469999999988 34567889998884 67788888888899999999887 664 5566554
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.07 E-value=4.2e-05 Score=75.50 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=59.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------hh-----------------------hH-----
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV-----------------------GA----- 302 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g~-----------------------~~----- 302 (715)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887654 67777776643222110 10 00
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 303 RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 303 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
..+..+...+....|.+|+|||+..+... +.......+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM----EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc----ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 01233344445678999999999987542 112223334445544432 245556555543
No 258
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.06 E-value=3.4e-05 Score=80.03 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 336 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 336 (715)
..|..++||+|||||.++|.+|..+|.+++.++|++-.+. ..+..+|.-+... .+.+.+||++.+-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 3478899999999999999999999999999999986542 4456666655432 5799999999873
Q ss_pred hHHHHHHHHHHHHH----hhc-----------cccCCCEEEEeecCCC----CcccccccCCCCcccccccCCCCHHHHH
Q 005066 337 QQYMKMTLNQLLVE----LDG-----------FKQNEGIIVIAATNFP----ESLDKALVRPGRFDRHIVVPNPDVEGRR 397 (715)
Q Consensus 337 ~~~~~~~l~~LL~~----Ld~-----------~~~~~~ViVIaaTN~p----~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 397 (715)
...-.++.+.+.. +.. +.-+.+.-++.|.|.. ..||+.|+. +-|-|.+-.||.....
T Consensus 98 -~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 98 -EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 1222222222222 211 1112334555666633 457777764 4468899999987766
Q ss_pred HHH
Q 005066 398 QIM 400 (715)
Q Consensus 398 ~IL 400 (715)
+++
T Consensus 174 ei~ 176 (231)
T PF12774_consen 174 EIL 176 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=87.12 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHHHHhcCchh----HhhhC---CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe-EEeeccchhhh---
Q 005066 228 GVDEAKQELEEIVHYLRDPKR----FTRLG---GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-FSCSGSEFEEM--- 296 (715)
Q Consensus 228 G~d~~k~eL~eiv~~L~~~~~----~~~lg---~~~pkgvLL~GPPGTGKT~LAralA~el~~~f-i~is~s~~~~~--- 296 (715)
-+..+.+.|..+.+.+..+.. +..+. ..+|+|+.|+|+-|.|||+|.-.....+..+- ..+....|.-.
T Consensus 29 aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~ 108 (367)
T COG1485 29 AQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQ 108 (367)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHH
Confidence 345556666666664332221 11222 34789999999999999999999998886543 33333333221
Q ss_pred ----HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC-Cc
Q 005066 297 ----FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ES 371 (715)
Q Consensus 297 ----~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p-~~ 371 (715)
..|.. .-+..+-... ...-.||+|||+..- +-....++..|+.+|- ..||++++|+|.+ +.
T Consensus 109 ~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF~Vt--------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 109 RLHTLQGQT-DPLPPIADEL-AAETRVLCFDEFEVT--------DIADAMILGRLLEALF----ARGVVLVATSNTAPDN 174 (367)
T ss_pred HHHHHcCCC-CccHHHHHHH-HhcCCEEEeeeeeec--------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHH
Confidence 11111 0011111111 122359999998521 1112345566666553 3589999999954 44
Q ss_pred ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHH
Q 005066 372 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMI 417 (715)
Q Consensus 372 LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~ 417 (715)
|-+ ++|.+.-.+| -.++++.++.-+..+...|+..
T Consensus 175 LY~-----dGlqR~~FLP------~I~li~~~~~v~~vD~~~DYR~ 209 (367)
T COG1485 175 LYK-----DGLQRERFLP------AIDLIKSHFEVVNVDGPVDYRL 209 (367)
T ss_pred hcc-----cchhHHhhHH------HHHHHHHheEEEEecCCccccc
Confidence 332 2333322222 2467888988887888878654
No 260
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.03 E-value=1.4e-05 Score=88.82 Aligned_cols=230 Identities=20% Similarity=0.226 Sum_probs=124.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCC--CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhH
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGG--KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGA 302 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~--~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~ 302 (715)
+|.|.+++|+.|.-++-- -+.+-..-|. +-.-+|+|.|.||..||-|.+++.+-+....+...-.+- -+|.++
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS---GVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS---GVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC---ccccch
Confidence 578999999888754432 1111111122 223469999999999999999999887666555422111 123333
Q ss_pred HHHHHHHHH-------H-HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEeecCCCC--
Q 005066 303 RRVRDLFSA-------A-KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPE-- 370 (715)
Q Consensus 303 ~~vr~lF~~-------A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--~~~~~ViVIaaTN~p~-- 370 (715)
..+++-... | --...+|-.|||+|.+........++-+.+....+-. -|+ .-+...-|+++.|...
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaK--AGI~TtLNAR~sILaAANPayGR 495 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAK--AGINTTLNARTSILAAANPAYGR 495 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhh--hccccchhhhHHhhhhcCccccc
Confidence 333221110 0 0112358889999998533222222222221111111 121 2234567888888442
Q ss_pred -----------cccccccCCCCccccccc-CCCCHHHHHHHHHHHh----hhhccC---CcccHHH------HHhcCC--
Q 005066 371 -----------SLDKALVRPGRFDRHIVV-PNPDVEGRRQIMESHM----SKVLKA---DDVDLMI------IARGTP-- 423 (715)
Q Consensus 371 -----------~LD~aLlRpgRFd~~I~v-~~Pd~~eR~~ILk~~l----~~~~~~---~dvdl~~------la~~t~-- 423 (715)
.|+.||++ |||..+-+ +.||.+.-..+.++.. ...... ..+|... +++...
T Consensus 496 Ynprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 496 YNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 48899998 99976654 6787766555555433 111111 1122111 122211
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 424 ---------------------------GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 424 ---------------------------G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
--|++-|-.+++.+...|..+-...|..+|+.+|++-+-+
T Consensus 574 vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 574 VPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 1245666667776666666666677777777777765544
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=6.2e-05 Score=80.57 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC-------eEEe-ec--------cchhhhH-hh--hhHHHHHHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSC-SG--------SEFEEMF-VG--VGARRVRDLFSAAK 313 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------fi~i-s~--------s~~~~~~-vg--~~~~~vr~lF~~A~ 313 (715)
..+.|..+||+|| +||+++|+++|..+-+. .-.+ +| .++..-. .| .....+|++...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3567889999996 68999999999877321 1000 01 1111000 01 23456777666553
Q ss_pred h----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccC
Q 005066 314 K----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVP 389 (715)
Q Consensus 314 ~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~ 389 (715)
. ....|++||++|.+. ...-|.||..|+. +..++++|..|+.++.|-|.+++ |.. +|.|+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~ 161 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHFP 161 (290)
T ss_pred hCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeCC
Confidence 2 234799999999883 4567899999884 56678888888889999999987 774 67776
Q ss_pred CCCHHHHHHHHH
Q 005066 390 NPDVEGRRQIME 401 (715)
Q Consensus 390 ~Pd~~eR~~ILk 401 (715)
. +.+...+++.
T Consensus 162 ~-~~~~~~~~L~ 172 (290)
T PRK07276 162 K-NEAYLIQLLE 172 (290)
T ss_pred C-cHHHHHHHHH
Confidence 5 5555555553
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=4e-05 Score=96.62 Aligned_cols=158 Identities=22% Similarity=0.276 Sum_probs=91.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe---EEeecc----
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF---FSCSGS---- 291 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f---i~is~s---- 291 (715)
+...|++++|.+...++|..++.. .....+-+-|+|++|+||||||+++++.+..+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999888888776542 223345688999999999999999998875443 111110
Q ss_pred ---chh-------hhHhhhhHHHHH-------------HHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHH
Q 005066 292 ---EFE-------EMFVGVGARRVR-------------DLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLL 348 (715)
Q Consensus 292 ---~~~-------~~~vg~~~~~vr-------------~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL 348 (715)
.+. ..........+. ......-...+.+|+||++|.. ..+..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~ 315 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALA 315 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHH
Confidence 000 000000000011 1111222356789999998742 1233333
Q ss_pred HHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005066 349 VELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 406 (715)
Q Consensus 349 ~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 406 (715)
...+.+ ..+-.||.||...+.+ +....++.+.++.|+.++-.+++..++-+
T Consensus 316 ~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 316 GQTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred hhCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 222222 2344566677654433 22246678899999999999999888743
No 263
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.91 E-value=7e-05 Score=76.81 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-H---hhh-------------------hHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-F---VGV-------------------GARRVRDLFS 310 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-~---vg~-------------------~~~~vr~lF~ 310 (715)
..-++|+||||+|||+++..++.+. +.+.+++++..+... + ... ....+..+..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 102 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEK 102 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHH
Confidence 3348999999999999999998755 778888887632211 1 000 0011122222
Q ss_pred HHHhCCCeEEEEcCchhhcCCC--CCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 311 AAKKRSPCIIFIDEIDAIGGSR--NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 311 ~A~~~~P~ILfIDEID~l~~~r--~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
... ..+.+|+||.+.++.... ...+.....+.+..++..|..+....++.||.+..
T Consensus 103 ~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 103 LAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 222 578999999999886432 11222222334444444444444456667766543
No 264
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00017 Score=86.71 Aligned_cols=175 Identities=23% Similarity=0.272 Sum_probs=112.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEeeccchh--hhHhhhhHHHHHHHHHHHH-hCCCeEEEEcC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFE--EMFVGVGARRVRDLFSAAK-KRSPCIIFIDE 324 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el----------~~~fi~is~s~~~--~~~vg~~~~~vr~lF~~A~-~~~P~ILfIDE 324 (715)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+.+++.+.+.+. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 688999999999999999999877 3445566655333 3477888899999999887 44668999999
Q ss_pred chhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC-----cccccccCCCCcccccccCCCCHHHHHHH
Q 005066 325 IDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQI 399 (715)
Q Consensus 325 ID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~I 399 (715)
++-+.+...... .....+ +|..+- ..+++-+|+||..-. .-||+|-| ||+ .+.++.|+.+.-..|
T Consensus 289 lh~lvg~g~~~~---~~d~~n-lLkp~L---~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~i 358 (898)
T KOG1051|consen 289 LHWLVGSGSNYG---AIDAAN-LLKPLL---ARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLI 358 (898)
T ss_pred eeeeecCCCcch---HHHHHH-hhHHHH---hcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhh
Confidence 999876654421 222222 222222 234488888776222 35799998 998 668889998876667
Q ss_pred HHHHhhhhccCCc--------ccHHHHH--hcCCCCCHHHHHHHHHHHHHHHH
Q 005066 400 MESHMSKVLKADD--------VDLMIIA--RGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 400 Lk~~l~~~~~~~d--------vdl~~la--~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
|...-.+...... +....+. ..+..+.+.-...++++|+....
T Consensus 359 L~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 359 LPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVK 411 (898)
T ss_pred hhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHh
Confidence 7665554211111 1111111 22344555556677777766554
No 265
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.87 E-value=9.3e-05 Score=78.14 Aligned_cols=171 Identities=22% Similarity=0.219 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH--hCCCe---EEeeccc------hhhhH---hhh
Q 005066 235 ELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE--AGVPF---FSCSGSE------FEEMF---VGV 300 (715)
Q Consensus 235 eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e--l~~~f---i~is~s~------~~~~~---vg~ 300 (715)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555666554421 33446899999999999999999987 43322 2222221 11110 111
Q ss_pred ----------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 301 ----------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 301 ----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
.......+. ..-...+++|+||+++... .+..+...+.. ...+..||.||....
T Consensus 77 ~~~~~~~~~~~~~~~~~l~-~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~~kilvTTR~~~ 140 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLR-ELLKDKRCLLVLDDVWDEE-------------DLEELREPLPS--FSSGSKILVTTRDRS 140 (287)
T ss_dssp C-STSSCCSSHHHHHHHHH-HHHCCTSEEEEEEEE-SHH-------------HH-------HC--HHSS-EEEEEESCGG
T ss_pred cccccccccccccccccch-hhhccccceeeeeeecccc-------------ccccccccccc--ccccccccccccccc
Confidence 112223333 3334458999999997541 12222222221 123456666776543
Q ss_pred cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc---cCC-cccHHHHHhcCCCCCHHHHHHH
Q 005066 371 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL---KAD-DVDLMIIARGTPGFSGADLANL 433 (715)
Q Consensus 371 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~---~~~-dvdl~~la~~t~G~sgadI~~l 433 (715)
... .+. .-+..+.++..+.++-.++|..+..... ... +-....|++.+.| .|--|.-+
T Consensus 141 v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 141 VAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp GGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 221 111 1145788999999999999999876543 111 1224568888765 45555443
No 266
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.87 E-value=5e-05 Score=86.40 Aligned_cols=194 Identities=22% Similarity=0.291 Sum_probs=102.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH-----HHHHHHHHH---hCCCeEEEEcCchhhcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR-----VRDLFSAAK---KRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~-----vr~lF~~A~---~~~P~ILfIDEID~l~~ 330 (715)
++||+|.||||||-+.|++++-....++...-..- -+|.++.. .+++--++- -...+|-+|||+|.+-.
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS---avGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS---AVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc---ccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 59999999999999999999988776665532110 11211111 111111110 11235888999999854
Q ss_pred CCCCCchHHHHHHHHH-----HHHHhhccccCCCEEEEeecCCCC-------------cccccccCCCCcccccccC---
Q 005066 331 SRNPKDQQYMKMTLNQ-----LLVELDGFKQNEGIIVIAATNFPE-------------SLDKALVRPGRFDRHIVVP--- 389 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~-----LL~~Ld~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I~v~--- 389 (715)
......++.+.+.-.. +.+.| +....||+|+|... .|-..+++ |||..-.+.
T Consensus 561 qDRtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~v 633 (854)
T KOG0477|consen 561 QDRTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTV 633 (854)
T ss_pred cccchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCCCCCccCCccchhhccccccchhh--hcceeeeeeccc
Confidence 3333333333321111 11111 24568899998631 24455555 888422221
Q ss_pred CCCHHHHHH--HHHHHhhhhc--------------------------------------cCCcccHHHHHhc--------
Q 005066 390 NPDVEGRRQ--IMESHMSKVL--------------------------------------KADDVDLMIIARG-------- 421 (715)
Q Consensus 390 ~Pd~~eR~~--ILk~~l~~~~--------------------------------------~~~dvdl~~la~~-------- 421 (715)
.|-.+++.. ++..|.+... ...+.|.+.+++.
T Consensus 634 d~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES 713 (854)
T KOG0477|consen 634 DPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKES 713 (854)
T ss_pred CchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhc
Confidence 133333322 3333332111 1122333322221
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 422 ----TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 422 ----t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
.-..+.+.|+.+++.+..+|...-+..|+.+|+..|+.-++
T Consensus 714 ~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~l 758 (854)
T KOG0477|consen 714 MATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVML 758 (854)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHH
Confidence 11125577788888777777777777888888888776543
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.86 E-value=0.00032 Score=78.25 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
..++++.||||||||+++.+++... | -.++.+.+... ... ..+.. -....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 4589999999999999999988762 3 22222222221 111 11111 2345799999998764
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.86 E-value=3.7e-05 Score=70.06 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~ 282 (715)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 269
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.0002 Score=77.09 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC-----------C--eEEee--ccchhhhHhhhhHHHHHHHHHHHHh----
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----------P--FFSCS--GSEFEEMFVGVGARRVRDLFSAAKK---- 314 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~-----------~--fi~is--~s~~~~~~vg~~~~~vr~lF~~A~~---- 314 (715)
.+.+...||+|+.|.||+.+++.++..+-+ | ++.++ +.. .....++++.+....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcc
Confidence 456668999999999999999999998722 2 22222 111 122455555554421
Q ss_pred -CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCH
Q 005066 315 -RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393 (715)
Q Consensus 315 -~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~ 393 (715)
...-|++||++|.+. ....|.||..|+. +++.+++|..|+.++.|-|.+.+ |.. +++|++|+.
T Consensus 88 ~~~~KvvII~~~e~m~-----------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 88 QSQKKILIIKNIEKTS-----------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred cCCceEEEEecccccC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 245799999998772 4456788888885 56677777777788888888876 663 789999998
Q ss_pred HHHHHHHHH
Q 005066 394 EGRRQIMES 402 (715)
Q Consensus 394 ~eR~~ILk~ 402 (715)
++..+.|..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887766654
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.80 E-value=6.5e-05 Score=77.37 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh-h--h---H----hhhhHHHHHHHHHHHH--hCCCeEEEEc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE-E--M---F----VGVGARRVRDLFSAAK--KRSPCIIFID 323 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~-~--~---~----vg~~~~~vr~lF~~A~--~~~P~ILfID 323 (715)
.|.-+||||+||+|||++|+.++.. ..++..+.+.-. . . . .......+.+.+.... ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3667999999999999999999632 223333332100 0 0 0 0001122333333322 2446899999
Q ss_pred CchhhcC
Q 005066 324 EIDAIGG 330 (715)
Q Consensus 324 EID~l~~ 330 (715)
.|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998753
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.80 E-value=9.6e-05 Score=83.92 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=53.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------hh--------hHHHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g~--------~~~~vr~lF~~A~~~~P~IL 320 (715)
.-+||+|+||+|||+|+..++... +.++++++..+..+... |. ....+..++...+...|.+|
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lV 160 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLV 160 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEE
Confidence 348899999999999999998766 67888888766443321 10 11234556666677789999
Q ss_pred EEcCchhhcCC
Q 005066 321 FIDEIDAIGGS 331 (715)
Q Consensus 321 fIDEID~l~~~ 331 (715)
+||+|..+...
T Consensus 161 VIDSIq~l~~~ 171 (446)
T PRK11823 161 VIDSIQTMYSP 171 (446)
T ss_pred EEechhhhccc
Confidence 99999988653
No 272
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.79 E-value=0.00018 Score=78.69 Aligned_cols=178 Identities=21% Similarity=0.221 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHh--cCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCe--EEeeccchhhhHhhhhHHHHHH
Q 005066 232 AKQELEEIVHYL--RDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF--FSCSGSEFEEMFVGVGARRVRD 307 (715)
Q Consensus 232 ~k~eL~eiv~~L--~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~f--i~is~s~~~~~~vg~~~~~vr~ 307 (715)
...+|+...+.. .++.... ...+|+|++|||.-|||||+|.-.+-..+.... -.+...+|... .-+++.+
T Consensus 89 ~i~~l~k~~~~~k~~~~~a~~--~~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~----VH~r~H~ 162 (467)
T KOG2383|consen 89 WIFELKKSFDDGKLDTPNASG--QPGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLS----VHKRMHE 162 (467)
T ss_pred HHHHHHHHHhccCCCCccccc--CCCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHH----HHHHHHH
Confidence 445555555542 2332221 156799999999999999999998875542200 01111222211 0111111
Q ss_pred HHHHH----------------------HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 308 LFSAA----------------------KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 308 lF~~A----------------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
+..+- -...-++|++||+..- +-....+|+.|...|- ..||++++|
T Consensus 163 ~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~ea~lLCFDEfQVT--------DVADAmiL~rLf~~Lf----~~GvVlvAT 230 (467)
T KOG2383|consen 163 LKQEQGAEKPGYAKSWEIDPLPVVADEIAEEAILLCFDEFQVT--------DVADAMILKRLFEHLF----KNGVVLVAT 230 (467)
T ss_pred HHHhccccCccccccccCCccHHHHHHHhhhceeeeechhhhh--------hHHHHHHHHHHHHHHH----hCCeEEEEe
Confidence 11110 0122379999998632 1112334555554442 359999999
Q ss_pred cCCC-CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCC---CCCH-HHHHHHHHHHH
Q 005066 366 TNFP-ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTP---GFSG-ADLANLVNIAA 438 (715)
Q Consensus 366 TN~p-~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~---G~sg-adI~~lv~~A~ 438 (715)
+|+. +.|-..=+. |...+| -..+|+.+++-+.+.+.+|+...+.... .|.+ .|...++++-.
T Consensus 231 SNR~P~dLYknGlQ-----R~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 231 SNRAPEDLYKNGLQ-----RENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred CCCChHHHhhcchh-----hhhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 9965 444433222 233332 2567888888888889999984433211 1233 37777766554
No 273
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00013 Score=76.62 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc--------------chhhhHh---hhhHHHHHHHHHHHH----
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS--------------EFEEMFV---GVGARRVRDLFSAAK---- 313 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s--------------~~~~~~v---g~~~~~vr~lF~~A~---- 313 (715)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|. ++.-.+. ..+...+|++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3567899999999999999999998773210000011 1100000 123345555554432
Q ss_pred h-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCC
Q 005066 314 K-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 391 (715)
Q Consensus 314 ~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~P 391 (715)
. ...-|++||++|.+ .....|.||..++. +..++++|..|+.++.+.|.+++ |.. .+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1 23479999999988 34567899999884 77788999999999999999987 764 4566665
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.0001 Score=81.79 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=52.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------hh--------hHHHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g~--------~~~~vr~lF~~A~~~~P~IL 320 (715)
.-+||+|+||+|||+|+..++... +.+++++++.+-.+... +. ....+..+++.+....|.+|
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lV 162 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEE
Confidence 348999999999999999998765 46788887754332211 10 11234556666677789999
Q ss_pred EEcCchhhcCC
Q 005066 321 FIDEIDAIGGS 331 (715)
Q Consensus 321 fIDEID~l~~~ 331 (715)
+||+|..+...
T Consensus 163 VIDSIq~l~~~ 173 (372)
T cd01121 163 IIDSIQTVYSS 173 (372)
T ss_pred EEcchHHhhcc
Confidence 99999998643
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=8.3e-05 Score=76.65 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=23.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~ 283 (715)
+++|+|+||||||+||.+|+..++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999998763
No 276
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.71 E-value=4.8e-05 Score=91.69 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=117.9
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchh--HhhhCCCCC-C-eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKR--FTRLGGKLP-K-GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~--~~~lg~~~p-k-gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
+....++.|....-..+.+.....++++. |...+.... + .+|++||||+|||+.+..+|.++|..++..+.++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 34446666665544445444444333321 211111111 1 3699999999999999999999999999999987665
Q ss_pred hHhhh-------hHHHHHHHHHH---HH-hCCC-eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEE
Q 005066 296 MFVGV-------GARRVRDLFSA---AK-KRSP-CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI 363 (715)
Q Consensus 296 ~~vg~-------~~~~vr~lF~~---A~-~~~P-~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVI 363 (715)
.+... +...+...|.. .. .... .||++||+|.+.. . +.. .-.-+.++.. ...+.||
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~---dRg-~v~~l~~l~~-------ks~~Piv 463 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E---DRG-GVSKLSSLCK-------KSSRPLV 463 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h---hhh-hHHHHHHHHH-------hccCCeE
Confidence 43211 11223333310 00 0122 3999999998864 1 111 1112333332 3456788
Q ss_pred eecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhh-hccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005066 364 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK-VLKADDVDLMIIARGTPGFSGADLANLVNIAALK 440 (715)
Q Consensus 364 aaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~-~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~ 440 (715)
+++|..+......+. |-+..++|+.|+...+..-+...+.. .....+-.++.+...+ ++||+++++.-...
T Consensus 464 ~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 464 CTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred EEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 888876654432222 44456899999999888766666543 2223334466666655 67999888766554
No 277
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.71 E-value=6.6e-05 Score=92.12 Aligned_cols=136 Identities=28% Similarity=0.377 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh--Hhh-----h--hHHHHH-HHHHHHHhCCCeEEEEcCc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVG-----V--GARRVR-DLFSAAKKRSPCIIFIDEI 325 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~--~vg-----~--~~~~vr-~lF~~A~~~~P~ILfIDEI 325 (715)
..+++||.|.||+|||+|..++|+..|-.++.++.|+-.+. .+| + ++-+-+ .-|-.|. ....-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RDGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hcCCEEEeehh
Confidence 34689999999999999999999999999999998864332 111 1 111111 1233332 23468899999
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHhh------------ccccCCCEEEEeecCCCC------cccccccCCCCcccccc
Q 005066 326 DAIGGSRNPKDQQYMKMTLNQLLVELD------------GFKQNEGIIVIAATNFPE------SLDKALVRPGRFDRHIV 387 (715)
Q Consensus 326 D~l~~~r~~~~~~~~~~~l~~LL~~Ld------------~~~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~~I~ 387 (715)
.-. .+.++..|-..|| .|.-.+++.|+||-|+-+ .|+..++. ||. +|.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 743 2333333333333 244567889999998654 58888887 996 778
Q ss_pred cCCCCHHHHHHHHHHHhhh
Q 005066 388 VPNPDVEGRRQIMESHMSK 406 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~~ 406 (715)
+...+.++...|.+.....
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 8888888888888776653
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.70 E-value=0.00029 Score=71.79 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCCCCCe--EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----Hhhh-------------------hHHH
Q 005066 253 GGKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVGV-------------------GARR 304 (715)
Q Consensus 253 g~~~pkg--vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~----~vg~-------------------~~~~ 304 (715)
++-.|+| ++++|+||+|||+++..+|.+. +.+.++++....... ..+. ....
T Consensus 13 ~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 13 GGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 3334444 8899999999999999998765 567777765421111 0000 0111
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
+..+..... ..+++|+||-+..+....... ........+..++..|..+....++.||.++..
T Consensus 93 ~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 93 IQETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 222322222 348899999999885321111 111222234444444444445567777776553
No 279
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.68 E-value=0.00034 Score=72.60 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh-------------------------------hH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-------------------------------GA 302 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~-------------------------------~~ 302 (715)
..-++++||||||||+++..++... |.+.++++..+-...+... ..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3459999999999999976554433 5677777654322111000 02
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 303 RRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 303 ~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
..+..+........|.+++|||+-.+.
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 233344445455678999999998764
No 280
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00021 Score=77.53 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-H---h------------hhhHHHHHHHHHHHHhCCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-F---V------------GVGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-~---v------------g~~~~~vr~lF~~A~~~~P~I 319 (715)
-++|+||||||||+|+-.++.+. |.++++++.....+. + . ...+..+..+....+...+.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 48899999999999988876655 677777776442221 0 0 111222333333345677899
Q ss_pred EEEcCchhhcCCCC-CC---c--hHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 320 IFIDEIDAIGGSRN-PK---D--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 320 LfIDEID~l~~~r~-~~---~--~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
|+||-+.++.+... .. + .....+.+.+++..|..+-...++.+|.+..
T Consensus 137 IVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999875311 10 1 1122234456666666665667777777643
No 281
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.63 E-value=0.00029 Score=76.54 Aligned_cols=114 Identities=24% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-Hh---h------------hhHHHHHHHHHHH
Q 005066 254 GKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FV---G------------VGARRVRDLFSAA 312 (715)
Q Consensus 254 ~~~pkg--vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-~v---g------------~~~~~vr~lF~~A 312 (715)
+-.|+| ++++||||||||+|+-.++.++ +.+.++++...-.+. +. | ..+..+..+-...
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 344544 7899999999999999987654 777888876432111 10 0 1112222222234
Q ss_pred HhCCCeEEEEcCchhhcCCC-CCC---ch--HHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 313 KKRSPCIIFIDEIDAIGGSR-NPK---DQ--QYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~~~r-~~~---~~--~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
+...+.+|+||-+-++.+.. ... +. ....+.+.+.|..|...-...++.+|.+..
T Consensus 130 ~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred hccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 56678999999999987531 111 11 112233455555555555556677776643
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.62 E-value=0.00052 Score=70.92 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
...+..++++|+||+|||+++..++.+. +.+.++++..+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 3334458999999999999999997653 67777776643
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00028 Score=68.68 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
.+.-++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999877
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=5.9e-05 Score=69.21 Aligned_cols=30 Identities=40% Similarity=0.868 Sum_probs=27.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
|+|.||||+||||+|+.||+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877665
No 285
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.57 E-value=0.00045 Score=70.63 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---C------CCeEEeeccch-hh-hHhh---------------------hhH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---G------VPFFSCSGSEF-EE-MFVG---------------------VGA 302 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~------~~fi~is~s~~-~~-~~vg---------------------~~~ 302 (715)
....-+.|+||||+|||+++..++... + ...++++...- .. .+.. ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 333458899999999999999998764 3 56677766532 11 1000 001
Q ss_pred HHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 303 RRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 303 ~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
..+...+... ....+.+|+||-|..+........ .....+.+.+++..|..+....++.||.++.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 1112222222 245778999999998864321111 2233455667777776666666777776653
No 286
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.56 E-value=0.00063 Score=73.15 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=93.9
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHH---HHHhCCCeEEeeccchhh--h--
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAI---AGEAGVPFFSCSGSEFEE--M-- 296 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAral---A~el~~~fi~is~s~~~~--~-- 296 (715)
.+.|..+..+.+.+++.. .-. .....|++.||.|+|||++.... +.+.|-.|+.+....+.. +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 467777777888887775 211 12347999999999999976554 336777887765443221 1
Q ss_pred -----------------HhhhhHHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005066 297 -----------------FVGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 297 -----------------~vg~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~ 354 (715)
..|.....+..+....+. ..+.|.++||||.+.+.. .+..+..|+..-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-------rQtllYnlfDisq-- 166 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-------RQTLLYNLFDISQ-- 166 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-------hhHHHHHHHHHHh--
Confidence 011112222233332222 123455568999886421 2333444443222
Q ss_pred ccCCCEEEEeecCCCCcc---cccccCCCCcccc-cccC-CCCHHHHHHHHHHHh
Q 005066 355 KQNEGIIVIAATNFPESL---DKALVRPGRFDRH-IVVP-NPDVEGRRQIMESHM 404 (715)
Q Consensus 355 ~~~~~ViVIaaTN~p~~L---D~aLlRpgRFd~~-I~v~-~Pd~~eR~~ILk~~l 404 (715)
....++.||+.|.+.+.+ .....+ ||... |.++ ..+..+-..|++..+
T Consensus 167 s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 235678999999888764 466665 99755 5554 345677777777766
No 287
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00036 Score=71.81 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch-hhh-Hh-------------------------h
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EEM-FV-------------------------G 299 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~-~~~-~v-------------------------g 299 (715)
...-+.|+||||+|||+++..++... +...++++..+- ... +. .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCHH
Confidence 33448899999999999999998553 256777776441 100 00 0
Q ss_pred hhHHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 300 VGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 300 ~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.....+..+-...... .+.+|+||-|..+........ .....+.+.+++..|..+....++.||.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0011112222223345 789999999998753211111 1334455666776666665666777776643
No 288
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.53 E-value=0.00021 Score=70.05 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC---eEEeeccch
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEF 293 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~---fi~is~s~~ 293 (715)
++|.++..++|...+. ......++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~---------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD---------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG---------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH---------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788877666665543 1123456789999999999999999998777433 777777666
No 289
>PRK08118 topology modulation protein; Reviewed
Probab=97.53 E-value=0.00016 Score=71.21 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=30.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s 291 (715)
-|+++||||+||||+|+.|+..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999888754
No 290
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.48 E-value=0.0035 Score=67.50 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=49.3
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCC---------C-----
Q 005066 315 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP---------G----- 380 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRp---------g----- 380 (715)
..+-||||||+|.+.+ +. +.+++..+..+-...++++|.+.+.. .|..++... |
T Consensus 171 ~~~iViiIDdLDR~~~-------~~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP-------EE----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred CceEEEEEcchhcCCc-------HH----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHH
Confidence 3567999999998832 22 33334333333444788888777632 222222110 0
Q ss_pred -CcccccccCCCCHHHHHHHHHHHhhhh
Q 005066 381 -RFDRHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 381 -RFd~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
-|+..+.+|+|+..+...++...+...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 356667889999999888888776543
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00045 Score=76.45 Aligned_cols=110 Identities=19% Similarity=0.318 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh----C-CCeEEeeccchhh----h------HhhhhH------HHHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA----G-VPFFSCSGSEFEE----M------FVGVGA------RRVRDLFSAAK 313 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el----~-~~fi~is~s~~~~----~------~vg~~~------~~vr~lF~~A~ 313 (715)
.....++|+||+|+||||++..||..+ | ..+..++...+.- . ..|... ..+...+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 334579999999999999999999864 3 2444454444310 0 111111 112222222
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEeecCCCCcccccc
Q 005066 314 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 314 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~-~~~ViVIaaTN~p~~LD~aL 376 (715)
.....+|+||...... ....+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 213 l~~~DlVLIDTaG~~~----------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ----------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred hcCCCEEEEcCCCCCc----------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 2345799999885321 12234444555544332 34578888888777766544
No 292
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.46 E-value=0.00075 Score=68.45 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=58.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh-----CCCe-------------EEeeccchh----hhHhhhhHHHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA-----GVPF-------------FSCSGSEFE----EMFVGVGARRVRDLFSAAKKR 315 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el-----~~~f-------------i~is~s~~~----~~~vg~~~~~vr~lF~~A~~~ 315 (715)
+.++|+||+|+|||+|.|.++... |.++ ..++..+-. ..+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 578999999999999999998643 4332 111111100 011 11124566677666545
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 316 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
.|.++++||.-.-. +..........++..+. . .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl------D~~~~~~l~~~ll~~l~---~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT------NSRERQAASAAVLKFLK---N-KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC------CHHHHHHHHHHHHHHHH---H-CCCEEEEEcCcHHHH
Confidence 78999999974211 11222223344454443 1 256777788776644
No 293
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.45 E-value=0.00014 Score=70.77 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.+..|+|+|+||||||++|+.||..++.+|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999988543
No 294
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.45 E-value=0.00068 Score=75.97 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=65.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHH-----HHHH--H-HhCCCeEEEEcCchhhcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRD-----LFSA--A-KKRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~-----lF~~--A-~~~~P~ILfIDEID~l~~ 330 (715)
+|||.|.|||.|+-|.|-+-.-..+-++. ++..- .-.|.++..+|+ .+-+ | --...+|++|||+|.+-.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKGS--SAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre 442 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKGS--SAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE 442 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEe-cCCCc--ccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc
Confidence 59999999999999999887655443332 21100 001111111111 0000 0 012346999999998843
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC-----------ccc--ccccCCCCcccccccCC
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE-----------SLD--KALVRPGRFDRHIVVPN 390 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~-----------~LD--~aLlRpgRFd~~I~v~~ 390 (715)
...-..++.+.+....+-..--.-.-+...-|+++.|.+- .+| +.+++ |||.++-+..
T Consensus 443 ~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD 513 (729)
T KOG0481|consen 443 DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD 513 (729)
T ss_pred hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence 2111223333332222221111112356677889998552 233 66676 9998776644
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00026 Score=69.96 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=30.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
-|+++|+||+||||||+.|+..++.|++..+.-.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 38899999999999999999999999887765443
No 296
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.44 E-value=0.0052 Score=65.43 Aligned_cols=96 Identities=25% Similarity=0.322 Sum_probs=60.2
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEe--eccch---
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSC--SGSEF--- 293 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~i--s~s~~--- 293 (715)
.|.|+.=+++.+-..+.. +.++. .+.|.-+-|+|+|||||.++++.||+.+ ..||+.. ....|
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 377888888777666554 55542 4456667799999999999999999977 2233211 11111
Q ss_pred --hhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 294 --EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 294 --~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
.+.|-.+-...+++ .+..++-+|+++||.|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 12222222233333 3456677899999999883
No 297
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.42 E-value=0.00023 Score=81.85 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=44.5
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeec
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSG 290 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~ 290 (715)
-|+|+.|++++++.+-+.+. ..- ..++. ..+-++|.||||+|||+||++|++.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~---~Aa--~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR---HAA--QGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH---HHH--HhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 48999999999777665542 111 11111 23468899999999999999999977 356666544
No 298
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.42 E-value=0.00073 Score=76.96 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=51.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------hh--------hHHHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g~--------~~~~vr~lF~~A~~~~P~IL 320 (715)
.-+||+|+||+|||+|+..++..+ +.+.+++++.+-..... +. ....+..+...+....|.+|
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~v 174 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQAC 174 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEE
Confidence 348899999999999999997765 46788888755433211 10 01123455556667789999
Q ss_pred EEcCchhhcC
Q 005066 321 FIDEIDAIGG 330 (715)
Q Consensus 321 fIDEID~l~~ 330 (715)
+||.|..+..
T Consensus 175 VIDSIq~l~~ 184 (454)
T TIGR00416 175 VIDSIQTLYS 184 (454)
T ss_pred EEecchhhcc
Confidence 9999998864
No 299
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.0012 Score=73.97 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=73.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ 338 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 338 (715)
-++|+||.++|||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999998888876556666665554332211 112222222222245799999999772
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHH
Q 005066 339 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399 (715)
Q Consensus 339 ~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~I 399 (715)
.....+..|. |.... .+++.+++...-....+-.-+||. ..+.+.|.+..+...+
T Consensus 108 ~W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 108 DWERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred hHHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 2445555554 22111 344444443222222222335785 4778888888888653
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.39 E-value=0.00037 Score=74.05 Aligned_cols=95 Identities=27% Similarity=0.405 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCC----------CeEEee-ccchhhhH-------hh------hhHHHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGV----------PFFSCS-GSEFEEMF-------VG------VGARRVRDLFSAAK 313 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~----------~fi~is-~s~~~~~~-------vg------~~~~~vr~lF~~A~ 313 (715)
++++|.||||+|||+|.+.+++.+.- ++..++ ..++...+ ++ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999998732 222221 11221111 01 11123445666777
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 314 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 314 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
...|.||++||+.. ...+..++..+. .+..+|++|+.++
T Consensus 192 ~~~P~villDE~~~-------------~e~~~~l~~~~~-----~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-------------EEDVEALLEALH-----AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCc-------------HHHHHHHHHHHh-----CCCEEEEEechhH
Confidence 78999999999631 122334444332 4677888887543
No 301
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.38 E-value=0.003 Score=69.10 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=92.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-------
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM------- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~------- 296 (715)
..+.+.+.+++.|..++-. .....|..+.|+|..|||||.+.+.+-+..+.+.+.++|-+....
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 3567778887777765431 123568889999999999999999999999999999988653221
Q ss_pred ------------HhhhhHHHH---HHHHHH---HHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 005066 297 ------------FVGVGARRV---RDLFSA---AKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN 357 (715)
Q Consensus 297 ------------~vg~~~~~v---r~lF~~---A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~ 357 (715)
.+......+ ..+|.+ +.. ...-.|++|.+|.+-. ...-.++.|+..-+ .-+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~e-l~~~ 147 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYE-LLNE 147 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHH-HhCC
Confidence 001111222 223333 112 2356888999999831 11222333332222 2222
Q ss_pred CCEEEEeecCCCCcccccccCCCCccc-ccccCCCCHHHHHHHHHHHhh
Q 005066 358 EGIIVIAATNFPESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 358 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
+.+.+|...-.++ +.-+.+-|-++- .++||.|+.++...|+..--.
T Consensus 148 ~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 148 PTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 3333333222111 111222234432 468999999999999876544
No 302
>PRK05973 replicative DNA helicase; Provisional
Probab=97.38 E-value=0.0034 Score=65.50 Aligned_cols=35 Identities=37% Similarity=0.321 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
.-+||.|+||+|||+++-.++.+. |.+.++++..+
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 358999999999999999887655 77777776543
No 303
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.37 E-value=0.00018 Score=72.52 Aligned_cols=121 Identities=23% Similarity=0.270 Sum_probs=56.2
Q ss_pred EEEEcCCCCChHHHHHHH-HHHh---CCCeEEeeccchhhh----HhhhhHH-------------HHHHHHHHHHhCCCe
Q 005066 260 VLLVGPPGTGKTMLARAI-AGEA---GVPFFSCSGSEFEEM----FVGVGAR-------------RVRDLFSAAKKRSPC 318 (715)
Q Consensus 260 vLL~GPPGTGKT~LAral-A~el---~~~fi~is~s~~~~~----~vg~~~~-------------~vr~lF~~A~~~~P~ 318 (715)
.+++|.||+|||+.|-.. .... |.+++. +...+.-. +.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 4333 666555 44322110 0000000 001111111111468
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccC
Q 005066 319 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVP 389 (715)
Q Consensus 319 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~ 389 (715)
+|+|||++.+.+.+...... .. ..+..+.. ....++-||.+|..+..||+.+++ ..+.++.+.
T Consensus 82 liviDEa~~~~~~r~~~~~~-~~----~~~~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-VP----EIIEFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHHHGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc-ch----HHHHHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEE
Confidence 99999999998877552211 11 22222322 234578888999999999998875 666555443
No 304
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00015 Score=75.14 Aligned_cols=23 Identities=48% Similarity=0.717 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-|-|.||+|||||||.+.+|+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.35 E-value=0.00052 Score=64.65 Aligned_cols=34 Identities=38% Similarity=0.703 Sum_probs=27.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
|+++||||+|||++|+.++..++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999999 44455554443
No 306
>PHA02624 large T antigen; Provisional
Probab=97.35 E-value=0.00041 Score=80.22 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
.+..+.+||+||||||||+++.+|++.++...+.+++..-
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ 467 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD 467 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc
Confidence 3334489999999999999999999999777777876553
No 307
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.33 E-value=0.0017 Score=64.26 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=54.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHH--------------------HHHHHHHHHHhCCCe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR--------------------RVRDLFSAAKKRSPC 318 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~--------------------~vr~lF~~A~~~~P~ 318 (715)
-+|+.||||+|||++|..++...+.+++++........ +... .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999999888877765442211 1111 122333221 23456
Q ss_pred EEEEcCchhhcCCCCCCch-HHHHHHHHHHHHHhh
Q 005066 319 IIFIDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELD 352 (715)
Q Consensus 319 ILfIDEID~l~~~r~~~~~-~~~~~~l~~LL~~Ld 352 (715)
+++||-+..+..+....+. ......+..++..+.
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~ 113 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ 113 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 8999999888543321111 223334455555554
No 308
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.33 E-value=0.0014 Score=61.68 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=40.5
Q ss_pred ccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 224 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..|.|++-+++.+...+.. +.++ ..+.|.-+.|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4689999988888776665 5443 23445567799999999999999999986
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.30 E-value=0.0017 Score=67.00 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
|..+..-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44445568999999999999999887654 7788887754
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.30 E-value=0.0022 Score=65.85 Aligned_cols=107 Identities=23% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhHh--------------h----------------
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV--------------G---------------- 299 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~v--------------g---------------- 299 (715)
...+..+|+.||||||||+++..++.+. |-+.++++..+-.+.+. .
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 3344459999999999999999876433 78888887643221110 0
Q ss_pred ---hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 300 ---VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 300 ---~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
........+.+..+...+.+++||-+..+.... +.......+..|...+. ..++.+|.+..
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011223333444455677899999999992221 12223344555555442 24445555544
No 311
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.29 E-value=0.0021 Score=58.48 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
++++++||+|+|||+++-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 378999999999999988887766
No 312
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.28 E-value=0.00068 Score=68.56 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=50.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----HhhhhHHHHHHHHHHHH---------hCCCeEEEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVGVGARRVRDLFSAAK---------KRSPCIIFI 322 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~----~vg~~~~~vr~lF~~A~---------~~~P~ILfI 322 (715)
.+++.||||||||++++.+...+ +..++.+..+.-... ..+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 58889999999999999987655 666666655432111 11111122222222111 123479999
Q ss_pred cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 323 DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 323 DEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
||...+. ...+..|+..... ...++++++-.+.
T Consensus 100 DEasmv~-----------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD-----------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B-----------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC-----------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998773 2234555544332 2346777776553
No 313
>PRK09354 recA recombinase A; Provisional
Probab=97.28 E-value=0.0013 Score=72.12 Aligned_cols=113 Identities=24% Similarity=0.285 Sum_probs=64.4
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-Hh---h------------hhHHHHHHHHHHH
Q 005066 254 GKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FV---G------------VGARRVRDLFSAA 312 (715)
Q Consensus 254 ~~~pkg--vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-~v---g------------~~~~~vr~lF~~A 312 (715)
+-.|+| ++|+||||||||+|+-.++.+. |...++++...-.+. +. | ..+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 445554 7899999999999999886554 777777776542211 10 0 1111222222234
Q ss_pred HhCCCeEEEEcCchhhcCCC-CC---Cc--hHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 313 KKRSPCIIFIDEIDAIGGSR-NP---KD--QQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~~~r-~~---~~--~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
+...+.+|+||-+-++.+.. .. .+ .....+.+.+.|..|..+-...++.+|.+.
T Consensus 135 ~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred hcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 55678999999999987521 11 11 111223344444444444455667777663
No 314
>PF14516 AAA_35: AAA-like domain
Probab=97.26 E-value=0.016 Score=63.33 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-------Hhhh------------------------hH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------FVGV------------------------GA 302 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-------~vg~------------------------~~ 302 (715)
+.-+.+.||..+|||++...+.+.+ |...+.+++..+... +... ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3468999999999999999987666 778888877654221 1100 01
Q ss_pred HHHHHHHHHH---HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc----CCCE-EEEeecCCCCcccc
Q 005066 303 RRVRDLFSAA---KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ----NEGI-IVIAATNFPESLDK 374 (715)
Q Consensus 303 ~~vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~----~~~V-iVIaaTN~p~~LD~ 374 (715)
......|+.. ....|-||+|||||.+.... ..... +-.+|+.+-.-.. ...+ ++++-+..+.....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~d-F~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADD-FFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHH-HHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 1222333321 22568999999999997421 11111 2222222211111 1122 23332222222211
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCC
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPG 424 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G 424 (715)
.-.+|--+...|.++..+.++...+++.|-... . .-.+..|-..+.|
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~-~~~~~~l~~~tgG 231 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--S-QEQLEQLMDWTGG 231 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhccC--C-HHHHHHHHHHHCC
Confidence 113443444567788889999888887764321 1 1126666666666
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.24 E-value=0.0018 Score=67.31 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHH---hCCCeEEeeccc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSE 292 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~e---l~~~fi~is~s~ 292 (715)
......+|++||||||||+++..++.+ .|.+.++++..+
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 334445999999999999999877654 367777776544
No 316
>PRK10536 hypothetical protein; Provisional
Probab=97.23 E-value=0.0016 Score=68.48 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
..|.-|.+.......+...+. + ..-++++||+|||||+||.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---S-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---c-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344556666655555544332 2 126899999999999999999885
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.0012 Score=66.77 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=41.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCC----eEEeec-cchhh---------hHhhhhHHHHHHHHHHHHhCCCeEEEEcCc
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVP----FFSCSG-SEFEE---------MFVGVGARRVRDLFSAAKKRSPCIIFIDEI 325 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~----fi~is~-s~~~~---------~~vg~~~~~vr~lF~~A~~~~P~ILfIDEI 325 (715)
+++.||+|+|||++++++++.+..+ ++.+.. .++.. .-++.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 7899999999999999998887422 222211 11110 001212223445555666678999999998
Q ss_pred h
Q 005066 326 D 326 (715)
Q Consensus 326 D 326 (715)
-
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 3
No 318
>PRK13947 shikimate kinase; Provisional
Probab=97.21 E-value=0.00034 Score=68.30 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=28.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+|+|.|+||+|||++++.||..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997665
No 319
>PHA02774 E1; Provisional
Probab=97.21 E-value=0.00099 Score=76.82 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEE-eec
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS-CSG 290 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~-is~ 290 (715)
++++|+||||||||++|-+|++.++...+. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999999655543 553
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.21 E-value=0.0024 Score=67.26 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
|.....-++|.||||+|||+++..++..+ +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444468999999999999999887664 6677777653
No 321
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.002 Score=66.12 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=46.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC--------CCeEEeecc-chhhhHhh-------------hhHHHHHHHHHHHHhCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG--------VPFFSCSGS-EFEEMFVG-------------VGARRVRDLFSAAKKRS 316 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~--------~~fi~is~s-~~~~~~vg-------------~~~~~vr~lF~~A~~~~ 316 (715)
+.||.||||+|||++.|-+|+-+. ..+..++-+ ++..-..| ...-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 689999999999999999998762 223344332 22211111 12233445666778899
Q ss_pred CeEEEEcCchh
Q 005066 317 PCIIFIDEIDA 327 (715)
Q Consensus 317 P~ILfIDEID~ 327 (715)
|.|+++|||..
T Consensus 219 PEViIvDEIGt 229 (308)
T COG3854 219 PEVIIVDEIGT 229 (308)
T ss_pred CcEEEEecccc
Confidence 99999999964
No 322
>PTZ00202 tuzin; Provisional
Probab=97.19 E-value=0.014 Score=65.66 Aligned_cols=181 Identities=18% Similarity=0.226 Sum_probs=100.0
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH---
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF--- 297 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~--- 297 (715)
....+++|.+....+|.+++.. .....|+-++|+||+|+|||++++.+...++.+.+.++.....+.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~---------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRR---------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhc---------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHH
Confidence 3457899999998888887763 2233456789999999999999999999999887777766432211
Q ss_pred ---hhh--------hHHHHHHHHHHHHh--CCCeEEEE--cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEE
Q 005066 298 ---VGV--------GARRVRDLFSAAKK--RSPCIIFI--DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIV 362 (715)
Q Consensus 298 ---vg~--------~~~~vr~lF~~A~~--~~P~ILfI--DEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViV 362 (715)
.|. ....+.+.+..+.. ....||+| -|=+. ..++-|+.+..--. ..-.++++
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~------------l~rvyne~v~la~d-rr~ch~v~ 396 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSS------------LQRVYNEVVALACD-RRLCHVVI 396 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCc------------HHHHHHHHHHHHcc-chhheeee
Confidence 111 11222222222222 22223333 33222 34444554432211 11122322
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLV 434 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv 434 (715)
=. ..+.|..+-..--|+| ...||+.+.++-.+..++.+... |+..+.. +.|-+..|+..|+
T Consensus 397 ev---pleslt~~~~~lprld-f~~vp~fsr~qaf~y~~h~~dal------~l~~fve-~vgtns~d~del~ 457 (550)
T PTZ00202 397 EV---PLESLTIANTLLPRLD-FYLVPNFSRSQAFAYTQHAIDAL------SLEHFVD-VVGTNSNDLDELL 457 (550)
T ss_pred ee---hHhhcchhcccCccce-eEecCCCCHHHHHHHHhhccchH------HhhHHHH-hhcCCcccHHHHH
Confidence 22 1233332222212787 45789999988888777776543 2222222 2356667777665
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0019 Score=72.05 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-------CCCeEEeeccchhhh-
Q 005066 226 VKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEFEEM- 296 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-------~~~fi~is~s~~~~~- 296 (715)
+...+.+++.+.+.+.. +..+..+ .....|+.++|+||+|+||||++..+|..+ +..+..+++..+...
T Consensus 144 ~~~~~~v~~~l~~~l~~~i~~~~~~--~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa 221 (388)
T PRK12723 144 LDDYDKVRDSVIIYIAKTIKCSGSI--IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA 221 (388)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH
Confidence 33445566665544432 3222111 112346789999999999999999998765 234444444433211
Q ss_pred ------Hh---h------hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC-CCE
Q 005066 297 ------FV---G------VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN-EGI 360 (715)
Q Consensus 297 ------~v---g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~-~~V 360 (715)
|. | .....+...+... ....+|+||+..... .+.. .+.++...++..... ..+
T Consensus 222 ~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~-----~~~~----~l~el~~~l~~~~~~~e~~ 290 (388)
T PRK12723 222 KKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSP-----KDFM----KLAEMKELLNACGRDAEFH 290 (388)
T ss_pred HHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCc-----cCHH----HHHHHHHHHHhcCCCCeEE
Confidence 10 1 1112233333332 345799999997542 1111 144444444433323 456
Q ss_pred EEEeecCCCCcccccc
Q 005066 361 IVIAATNFPESLDKAL 376 (715)
Q Consensus 361 iVIaaTN~p~~LD~aL 376 (715)
+|+.+|.....+...+
T Consensus 291 LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 291 LAVSSTTKTSDVKEIF 306 (388)
T ss_pred EEEcCCCCHHHHHHHH
Confidence 7777777666555433
No 324
>PRK04296 thymidine kinase; Provisional
Probab=97.18 E-value=0.0011 Score=66.70 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=41.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc----chhh---hHhhhh-----HHHHHHHHHHHH--hCCCeEEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS----EFEE---MFVGVG-----ARRVRDLFSAAK--KRSPCIIF 321 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s----~~~~---~~vg~~-----~~~vr~lF~~A~--~~~P~ILf 321 (715)
-+|++||||+|||+++..++..+ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888766 5555555331 1000 001110 112334444432 34568999
Q ss_pred EcCchhh
Q 005066 322 IDEIDAI 328 (715)
Q Consensus 322 IDEID~l 328 (715)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999755
No 325
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.0028 Score=69.43 Aligned_cols=73 Identities=27% Similarity=0.341 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-------Hh---h----------hhHHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------FV---G----------VGARRVRDLFSAA 312 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-------~v---g----------~~~~~vr~lF~~A 312 (715)
.|.-++|+||||+||||++..+|..+ +..+..+++..+... +. | .....+.+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888765 555655665533211 00 1 0112223334444
Q ss_pred HhCCCeEEEEcCchhh
Q 005066 313 KKRSPCIIFIDEIDAI 328 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l 328 (715)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455578999988654
No 326
>PRK06762 hypothetical protein; Provisional
Probab=97.17 E-value=0.0012 Score=64.20 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
|.-++|+|+||+|||++|+.++..++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 557899999999999999999999976677777665554
No 327
>PRK13948 shikimate kinase; Provisional
Probab=97.16 E-value=0.0015 Score=65.42 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+.|..|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35678999999999999999999999999998665
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0011 Score=66.14 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=26.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
.|+|.||||+||||+|+.|++.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 48999999999999999999994 4555554443
No 329
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.16 E-value=0.00041 Score=73.02 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=54.4
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHH------HhCCCeEEeeccchhhhH-hhhhHHHHHHHHHHH--------HhCC
Q 005066 252 LGGKLPKGVLLVGPPGTGKTMLARAIAG------EAGVPFFSCSGSEFEEMF-VGVGARRVRDLFSAA--------KKRS 316 (715)
Q Consensus 252 lg~~~pkgvLL~GPPGTGKT~LAralA~------el~~~fi~is~s~~~~~~-vg~~~~~vr~lF~~A--------~~~~ 316 (715)
..+.....+||.||.|.||++||+.|.. .+..+|+.++|..+.... ...-...++..|.-| +...
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 3444555699999999999999999854 457899999999875431 111112344444433 2234
Q ss_pred CeEEEEcCchhhcC
Q 005066 317 PCIIFIDEIDAIGG 330 (715)
Q Consensus 317 P~ILfIDEID~l~~ 330 (715)
..+||+|||..++.
T Consensus 283 ggmlfldeigelga 296 (531)
T COG4650 283 GGMLFLDEIGELGA 296 (531)
T ss_pred CceEehHhhhhcCc
Confidence 57999999998864
No 330
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.00079 Score=71.07 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=59.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC---eEEee-ccchh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCS-GSEFE 294 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~---fi~is-~s~~~ 294 (715)
...+++++.-.....+.+.+++... .....++|+.||+|+|||++++++...+.-. ++.+. ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4557888877666656666555532 1122379999999999999999999988433 33332 11111
Q ss_pred hh------Hhh-hhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 295 EM------FVG-VGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 295 ~~------~vg-~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
-. +.. .......+++..+....|.+|+|+||.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 00 001 133456677778888899999999996
No 331
>PRK03839 putative kinase; Provisional
Probab=97.15 E-value=0.00038 Score=68.89 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=28.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
-|+|.|+||+||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997654
No 332
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.13 E-value=0.0059 Score=62.60 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------h--------h-----------hHHHHHH-
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------G--------V-----------GARRVRD- 307 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g--------~-----------~~~~vr~- 307 (715)
..-+++.|+||+|||+++..++.+. |.+.++++..+-.+.+. | . ....+..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 95 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTSLNRI 95 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhhHHHH
Confidence 3458999999999999999887653 77777776644322111 0 0 0000111
Q ss_pred ---HHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 308 ---LFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 308 ---lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
+........+..++||-+..+-.- ..+.......+..++..+. . .++.++.+++
T Consensus 96 ~~~~~~~i~~~~~~~vVIDsls~l~~~--~~~~~~~r~~l~~l~~~lk---~-~~~tvll~s~ 152 (224)
T TIGR03880 96 KNELPILIKELGASRVVIDPISLLETL--FDDDAERRTELFRFYSSLR---E-TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHhCCCEEEEcChHHHhhh--cCCHHHHHHHHHHHHHHHH---h-CCCEEEEEEc
Confidence 122234456789999999877211 1222333445556666553 2 3445555554
No 333
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.0045 Score=65.13 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~ 283 (715)
.-++|.||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35999999999999999999998754
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.12 E-value=0.0035 Score=64.29 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~ 279 (715)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999984
No 335
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.0005 Score=68.32 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=29.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 336
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.10 E-value=0.0032 Score=68.34 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc-hh-hhHh------hh---------------h----
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FE-EMFV------GV---------------G---- 301 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~-~~-~~~v------g~---------------~---- 301 (715)
.-++|+||||+|||.|+..++-.. +...++++... |. +... +. .
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~ 176 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQ 176 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHH
Confidence 347899999999999998887432 45667776544 11 1000 00 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
...+..+-.......+.+|+||-|-++....... ......+.+.+++..|..+....++.||.+.
T Consensus 177 ~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 177 MELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0111222222334568899999999887532211 1222334466666666666566677766653
No 337
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.09 E-value=0.00052 Score=65.52 Aligned_cols=31 Identities=35% Similarity=0.693 Sum_probs=28.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+|+|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988554
No 338
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.07 E-value=0.0028 Score=68.82 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch-h-hhH------hhhh----------------
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-E-EMF------VGVG---------------- 301 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~-~-~~~------vg~~---------------- 301 (715)
....-++|+||||+|||+++-.++..+ +...++++...- . +.+ .|..
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCCH
Confidence 334458899999999999999998764 346777776541 1 000 0000
Q ss_pred ---HHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 302 ---ARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 302 ---~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
...+..+...... ..+.+|+||-|-++....... +.....+.+.+++..|..+....++.||.++.
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0011122222233 466899999999886432111 22223444566666665555566777777654
No 339
>PRK13946 shikimate kinase; Provisional
Probab=97.07 E-value=0.0014 Score=65.40 Aligned_cols=35 Identities=34% Similarity=0.588 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
.++.|+|.|+||+|||++++.||..+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35689999999999999999999999999987663
No 340
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.07 E-value=0.0034 Score=68.99 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=62.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc-hhhh-H------hhhh-------------------H
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEM-F------VGVG-------------------A 302 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~-~~~~-~------vg~~-------------------~ 302 (715)
-+.|+||||||||.|+..+|-.. +...++++... |... . .|.. .
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~ 207 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQY 207 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHH
Confidence 37799999999999999887433 24567776643 1110 0 0000 0
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 303 RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 303 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
..+..+-.......+.+|+||-|-.+....... ......+.+.+++..|..+....++.||.+.
T Consensus 208 ~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 208 NLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111222222334568899999999886542211 1223445566766666665555666666653
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.06 E-value=0.0046 Score=70.01 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccch
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 293 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~ 293 (715)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457789999999999999999998877 566666666544
No 342
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0016 Score=64.44 Aligned_cols=32 Identities=31% Similarity=0.635 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+.|+|+|++|+||||+.++||+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998775
No 343
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.0035 Score=69.62 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~ 282 (715)
.||+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998774
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.04 E-value=0.0042 Score=67.07 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc-hhhh-H------hhhhH----------------
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEM-F------VGVGA---------------- 302 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~-~~~~-~------vg~~~---------------- 302 (715)
...-++++||||+|||+++-.+|..+ +...++++... |... + .+...
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCCHH
Confidence 33447899999999999999998764 33677777655 2111 0 01000
Q ss_pred ---HHHHHHHHHHHhC--CCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 303 ---RRVRDLFSAAKKR--SPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 303 ---~~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
..+..+....... .+.+|+||-|-.+....... ......+.++.++..|..+....++.||.+..
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0112222333333 36799999998875432111 11223344556666565555566777776643
No 345
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.02 E-value=0.002 Score=65.45 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHH
Q 005066 233 KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA 312 (715)
Q Consensus 233 k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A 312 (715)
+..|...|....+| |.+....++|.|+-|+|||++.+.|+.+ ++.-+.....+ ...... .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------KDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------cHHHHH----H
Confidence 45555666554444 5555667889999999999999999666 22111111110 111111 1
Q ss_pred HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH-hhcccc---------CCCEEEEeecCCCCcc-cccccCCCC
Q 005066 313 KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE-LDGFKQ---------NEGIIVIAATNFPESL-DKALVRPGR 381 (715)
Q Consensus 313 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~-Ld~~~~---------~~~ViVIaaTN~p~~L-D~aLlRpgR 381 (715)
..+ -|+.|||++.+..+ + . ..+..++.. .+.++. ....++|||||..+-| |+.--| |
T Consensus 94 ~~~--~iveldEl~~~~k~----~---~-~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--R 161 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK----D---V-EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--R 161 (198)
T ss_pred HHh--HheeHHHHhhcchh----h---H-HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--E
Confidence 111 38999999987521 1 1 233344332 222221 2347889999998755 444445 7
Q ss_pred cccccccC
Q 005066 382 FDRHIVVP 389 (715)
Q Consensus 382 Fd~~I~v~ 389 (715)
|- .|.+.
T Consensus 162 f~-~v~v~ 168 (198)
T PF05272_consen 162 FW-PVEVS 168 (198)
T ss_pred EE-EEEEc
Confidence 73 44443
No 346
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.02 E-value=0.0053 Score=60.80 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=46.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-Hh----------------hhhHHHHHHHHHHHHhCCCeEEEE
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FV----------------GVGARRVRDLFSAAKKRSPCIIFI 322 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~-~v----------------g~~~~~vr~lF~~A~~~~P~ILfI 322 (715)
+|++|+||+|||++|..++...+.+.+++....-.+. +. .+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887878887765432211 00 01112333333222 24679999
Q ss_pred cCchhhcCCC
Q 005066 323 DEIDAIGGSR 332 (715)
Q Consensus 323 DEID~l~~~r 332 (715)
|-+..+..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998876543
No 347
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.02 E-value=0.0022 Score=60.51 Aligned_cols=30 Identities=30% Similarity=0.760 Sum_probs=28.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
|.+.|+||+|||++|+.|+..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 348
>PRK13949 shikimate kinase; Provisional
Probab=97.00 E-value=0.00064 Score=67.13 Aligned_cols=31 Identities=42% Similarity=0.688 Sum_probs=29.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|+|+|+||+|||++++.+|+.++.+|+.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999998876
No 349
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0034 Score=63.52 Aligned_cols=22 Identities=45% Similarity=0.824 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el 281 (715)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999988
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.99 E-value=0.005 Score=65.00 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
...+|++||||||||+++-.++... |-+.++++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3448999999999999999886643 6677777654
No 351
>PTZ00035 Rad51 protein; Provisional
Probab=96.98 E-value=0.0054 Score=67.31 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=61.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc-hhhhHh-------hh-------------------h
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEMFV-------GV-------------------G 301 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~-~~~~~v-------g~-------------------~ 301 (715)
.-+.|+||||+|||+|+..++... +...++++... |....+ +. .
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e~~ 198 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQ 198 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHHHH
Confidence 347799999999999999997543 33455666543 111000 00 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
...+..+........+.+|+||-|-+++..... .......+.+.+++..|..+....++.||.+
T Consensus 199 ~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 199 MQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 011112222223456789999999998654221 1222334556666666665555567777655
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.98 E-value=0.0043 Score=61.06 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-.++|+||+|||||+|.|++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 334459999999999999999999854
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.97 E-value=0.0007 Score=66.85 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=27.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
|+++||||+||||+++.||..++.+. ++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 68999999999999999999998654 55555543
No 354
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00064 Score=65.37 Aligned_cols=31 Identities=39% Similarity=0.764 Sum_probs=28.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+||++|-||||||+++..||...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999999988765
No 355
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.96 E-value=0.0008 Score=66.45 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
+-++|.|+||+|||++|+.++..++.+++.++...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4689999999999999999999999888877665554
No 356
>PRK14532 adenylate kinase; Provisional
Probab=96.96 E-value=0.00074 Score=67.22 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=29.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.|+|.||||+||||+++.||..+|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 5899999999999999999999987664 45455443
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.0022 Score=62.65 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchhh--------hHhh-----hhHHHHHHHHHHHHhCCCe
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEE--------MFVG-----VGARRVRDLFSAAKKRSPC 318 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~~--------~~vg-----~~~~~vr~lF~~A~~~~P~ 318 (715)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.++.. ..++ .+..+.+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 344456899999999999999999987521 112233222110 0010 1122344445556667899
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 319 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 319 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
++++||-..- .+......+.+++.++. . .+..+|.+|+.++.+
T Consensus 103 illlDEP~~~-------LD~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~~ 145 (163)
T cd03216 103 LLILDEPTAA-------LTPAEVERLFKVIRRLR---A-QGVAVIFISHRLDEV 145 (163)
T ss_pred EEEEECCCcC-------CCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHH
Confidence 9999997532 22334445555555542 2 245666677766543
No 358
>PLN02200 adenylate kinase family protein
Probab=96.94 E-value=0.0011 Score=69.07 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
+.+.|.-+++.||||+|||++++.||..+|.+ .++.+++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34556679999999999999999999999865 4666666543
No 359
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.94 E-value=0.0053 Score=64.15 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=28.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
|+|+|+||+|||++|+.++..+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 7899999999999999999987 5667777665443
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.91 E-value=0.0044 Score=71.27 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=54.0
Q ss_pred hCCCCCC--eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh--------------------------
Q 005066 252 LGGKLPK--GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-------------------------- 300 (715)
Q Consensus 252 lg~~~pk--gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~-------------------------- 300 (715)
+|+-.|+ .+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+...
T Consensus 256 lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 256 CGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred hcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccccc
Confidence 3444444 49999999999999999998765 6677888765543321110
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 301 --GARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 301 --~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
....+..+.+......|.+|+||-+..+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 02344555566667789999999999874
No 361
>PRK06217 hypothetical protein; Validated
Probab=96.90 E-value=0.0009 Score=66.61 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|+|.|+||+||||+++.|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987665
No 362
>PRK14531 adenylate kinase; Provisional
Probab=96.89 E-value=0.0011 Score=66.08 Aligned_cols=35 Identities=29% Similarity=0.597 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
+-|+++||||+|||++++.||..+|.+++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 369999999999999999999999977654 44443
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.89 E-value=0.0022 Score=70.41 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=43.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCC----CeEEee-ccchh---------hhHhhhhHHHHHHHHHHHHhCCCeEEEEcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGV----PFFSCS-GSEFE---------EMFVGVGARRVRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~----~fi~is-~s~~~---------~~~vg~~~~~vr~lF~~A~~~~P~ILfIDE 324 (715)
.+|++||+|+||||+.+++.+.+.- .++.+. ..++. ..-+|.........+..+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999987742 233221 11111 001122122345556666678999999999
Q ss_pred ch
Q 005066 325 ID 326 (715)
Q Consensus 325 ID 326 (715)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 94
No 364
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.89 E-value=0.0086 Score=61.50 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeec
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 290 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~ 290 (715)
|......++++||||+|||+++..++.+. +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33444569999999999999999876533 556666664
No 365
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.88 E-value=0.0039 Score=68.67 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 366
>PRK04328 hypothetical protein; Provisional
Probab=96.88 E-value=0.013 Score=61.42 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHH---hCCCeEEeecc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGS 291 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~e---l~~~fi~is~s 291 (715)
....+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3445899999999999999887654 26677777653
No 367
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.88 E-value=0.024 Score=69.68 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=79.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh---hH----hhh------h-----------------HHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE---MF----VGV------G-----------------ARRVRD 307 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~---~~----vg~------~-----------------~~~vr~ 307 (715)
+-++++||+|.|||+++...+...+ ++..++.....+ .| ... . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999888776 665555432110 01 000 0 011222
Q ss_pred HHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc-ccccCCCCcccc
Q 005066 308 LFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD-KALVRPGRFDRH 385 (715)
Q Consensus 308 lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD-~aLlRpgRFd~~ 385 (715)
++..... ..|.+|+|||++.+. .......+..|+..+ .+++.+|.++.....++ ..+... +..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---DQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---Ccc
Confidence 3333322 578999999999772 122334455555432 34444444554321221 111111 112
Q ss_pred cccC----CCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCC
Q 005066 386 IVVP----NPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGF 425 (715)
Q Consensus 386 I~v~----~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~ 425 (715)
+.+. ..+.++-.+++...+.... ..-+...|...|.|+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~~--~~~~~~~l~~~t~Gw 218 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSPI--EAAESSRLCDDVEGW 218 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCCC--CHHHHHHHHHHhCCh
Confidence 3344 5678888888876654321 223355667777764
No 368
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.85 E-value=0.001 Score=66.11 Aligned_cols=34 Identities=38% Similarity=0.738 Sum_probs=28.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
|+|+||||+|||++++.||..++++++. ..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999999877654 444443
No 369
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.85 E-value=0.00099 Score=66.60 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=44.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeecc-chhh---hH----------hhhhHHHHHHHHHHHHhCCCeEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGS-EFEE---MF----------VGVGARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s-~~~~---~~----------vg~~~~~vr~lF~~A~~~~P~IL 320 (715)
...++|.||+|+|||++++++++... ...+.+... ++.. .. .+.....+.+++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 45799999999999999999998763 122222110 1100 00 01112345666767777889999
Q ss_pred EEcCch
Q 005066 321 FIDEID 326 (715)
Q Consensus 321 fIDEID 326 (715)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999994
No 370
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.84 E-value=0.0025 Score=64.64 Aligned_cols=108 Identities=29% Similarity=0.439 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh-------hH---hh----------hhHHHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE-------MF---VG----------VGARRVRDLFSAAK 313 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~-------~~---vg----------~~~~~vr~lF~~A~ 313 (715)
|+-++|+||+|+||||.+-.+|..+ +..+-.+++..+.- .| .+ .....+++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6779999999999999888888766 44444444333211 01 11 11233445555665
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 314 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 314 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
...-.+||||-... ++.+.. ...-+..++..+ ....-++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr-----~~~d~~-~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR-----SPRDEE-LLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SS-----SSTHHH-HHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCc-----chhhHH-HHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 55557999887532 122222 222233444333 2333455555555555444
No 371
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.83 E-value=0.0057 Score=61.87 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~ 279 (715)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3599999999999999999984
No 372
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.83 E-value=0.0041 Score=60.06 Aligned_cols=35 Identities=31% Similarity=0.649 Sum_probs=29.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
++|+|+||+|||++++.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999998 6677777765554
No 373
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.009 Score=66.50 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh----hh---H-
Q 005066 230 DEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE----EM---F- 297 (715)
Q Consensus 230 d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~----~~---~- 297 (715)
+++++.+.+.+.. +..+.. ....|+-++|.||+|+||||++..||..+ +..+..+++..+. +. |
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~----~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENV----FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhccccc----cccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 5566666555443 332211 12336789999999999999999999876 4455555554332 11 1
Q ss_pred --------hhhhHHHHHHHHHHHHh-CCCeEEEEcCchh
Q 005066 298 --------VGVGARRVRDLFSAAKK-RSPCIIFIDEIDA 327 (715)
Q Consensus 298 --------vg~~~~~vr~lF~~A~~-~~P~ILfIDEID~ 327 (715)
+......+.+....++. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 01123344444544443 2357888886643
No 374
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.81 E-value=0.0011 Score=63.35 Aligned_cols=33 Identities=30% Similarity=0.791 Sum_probs=27.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
++|+|+||+|||++|+.++..++.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.021 Score=64.12 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSE 292 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~ 292 (715)
+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4568899999999999999999754 44455555544
No 376
>PRK13695 putative NTPase; Provisional
Probab=96.80 E-value=0.0096 Score=58.64 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.++|+|+||+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998775
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0029 Score=61.18 Aligned_cols=106 Identities=31% Similarity=0.380 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCC--eEEeeccchhh-------h---H---hhhhHHHHHHHHHHHHhCCCeEE
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEE-------M---F---VGVGARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~--fi~is~s~~~~-------~---~---vg~~~~~vr~lF~~A~~~~P~IL 320 (715)
....+.|.||+|+|||+|.+++++..... -+.+++..... . | ...+ ...+-.+..+-...|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEE
Confidence 34468999999999999999999876421 12333322111 0 0 1112 223333444555678999
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 321 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 321 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
++||...=. +......+..++..+- .. +..+|.+|+..+.+.
T Consensus 103 ilDEp~~~l-------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 103 LLDEPTSGL-------DPASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred EEeCCCcCC-------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 999986432 1223334444444432 22 346677777665543
No 378
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.79 E-value=0.0064 Score=73.00 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH---hCCCeEEeeccchhh-hH---hh------------hhHHHHHHHHHHHHhCCCe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSEFEE-MF---VG------------VGARRVRDLFSAAKKRSPC 318 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e---l~~~fi~is~s~~~~-~~---vg------------~~~~~vr~lF~~A~~~~P~ 318 (715)
.-++|+||||||||+|+..++.. .|...++++...-.. .+ .| ..+..+..+-...+...+.
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 34889999999999999776543 366777776544221 00 01 0111122222223456789
Q ss_pred EEEEcCchhhcCC-CCC---C-c-hHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 319 IIFIDEIDAIGGS-RNP---K-D-QQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 319 ILfIDEID~l~~~-r~~---~-~-~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
+|+||-|.++..+ .-. . . .....+.++++|..|..+-...++.+|.|.
T Consensus 141 LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 141 IVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred EEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999852 111 1 1 112233445666666666566777777764
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.78 E-value=0.0016 Score=67.68 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
|..|+|.||||+||||+|+.||..++++++.+.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 445999999999999999999999998776654
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.78 E-value=0.0018 Score=64.50 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=55.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccch---hhh-HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEF---EEM-FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~---~~~-~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 330 (715)
..-+.|.||.|+|||||.+.+++.... --+.+++..+ ... .... ..+-+-.+..+-...|.++++||--.-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts~L- 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSAYL- 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcccC-
Confidence 345889999999999999999986521 1122222111 000 0111 1233334445556789999999975322
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
+......+..++.++ ....+..||.+|+..+.
T Consensus 103 ------D~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 103 ------DIEQRLNAARAIRRL---SEEGKKTALVVEHDLAV 134 (177)
T ss_pred ------CHHHHHHHHHHHHHH---HHcCCCEEEEEECCHHH
Confidence 222333334444333 22232456666666544
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.78 E-value=0.0097 Score=59.46 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 005066 260 VLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA 278 (715)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 382
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=67.07 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=27.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|.||||+||||+++.||..++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999877654
No 383
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.76 E-value=0.0022 Score=65.33 Aligned_cols=137 Identities=24% Similarity=0.323 Sum_probs=65.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 337 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~-~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 337 (715)
-++|+||+|||||.+|-++|+..|.|++..+.-..... .+|.+ +.... ...+-.=+||||-..-- +.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~-----el~~~~RiyL~~r~l~~------G~ 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPS-----ELKGTRRIYLDDRPLSD------GI 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SG-----GGTT-EEEES----GGG-------S
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHH-----HHcccceeeeccccccC------CC
Confidence 37899999999999999999999999999987665443 23322 11111 11111237787654221 11
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEeecCCC-Ccc--cccccCCCCcccc-cccCCCCHHHHHHHHHHHhhhhcc
Q 005066 338 QYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ESL--DKALVRPGRFDRH-IVVPNPDVEGRRQIMESHMSKVLK 409 (715)
Q Consensus 338 ~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p-~~L--D~aLlRpgRFd~~-I~v~~Pd~~eR~~ILk~~l~~~~~ 409 (715)
-........|+..++.+....++|+=+-+... ..+ |+-..- .|..+ ..++.||.+.-..-.+...+++..
T Consensus 71 i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 71 INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp --HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 12333455666667777665555554544211 000 111111 33333 366889988877777777766644
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.74 E-value=0.0012 Score=64.10 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=26.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
++|.||||+|||++++.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999987665 44444
No 385
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.74 E-value=0.0016 Score=64.36 Aligned_cols=34 Identities=29% Similarity=0.695 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
++.|+|.||+|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999987764
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.73 E-value=0.0071 Score=57.97 Aligned_cols=102 Identities=23% Similarity=0.232 Sum_probs=56.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCC--eEEeecc---chhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGS---EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~--fi~is~s---~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
.....+.|.||+|+|||+|++.+++..... -+.++.. .+...+ ..+ .+-+-.+..+-...|.++++||-..-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G-~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGG-EKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHH-HHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 344468899999999999999999876210 1111111 000001 111 222333444556788999999975322
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 330 GSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 330 ~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
+......+.+++..+ +..+|.+|+.++.+
T Consensus 102 -------D~~~~~~l~~~l~~~-------~~til~~th~~~~~ 130 (144)
T cd03221 102 -------DLESIEALEEALKEY-------PGTVILVSHDRYFL 130 (144)
T ss_pred -------CHHHHHHHHHHHHHc-------CCEEEEEECCHHHH
Confidence 222333444555443 12566677765543
No 387
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.72 E-value=0.012 Score=60.02 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=74.6
Q ss_pred CchhHhhhCCCCCCe--EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----------------------
Q 005066 245 DPKRFTRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF---------------------- 297 (715)
Q Consensus 245 ~~~~~~~lg~~~pkg--vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~---------------------- 297 (715)
+-+.-.++|+-.|.| +|+.|+.|||||.|.+.++.-+ +....+++...-...|
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 344446778777766 8889999999999999998644 3333333321100000
Q ss_pred -----------hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 298 -----------VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 298 -----------vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.......+..+.+..+.....||+||-++.+.... ....+.+++..+..+...++++++ |
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l~d~gKvIil-T- 164 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKLSDLGKVIIL-T- 164 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cHHHHHHHHHHHHHHHhCCCEEEE-E-
Confidence 01122334444555555667899999999886322 223456666666666665655544 3
Q ss_pred CCCCcccccccC
Q 005066 367 NFPESLDKALVR 378 (715)
Q Consensus 367 N~p~~LD~aLlR 378 (715)
-+|+.+|++.+-
T Consensus 165 vhp~~l~e~~~~ 176 (235)
T COG2874 165 VHPSALDEDVLT 176 (235)
T ss_pred eChhhcCHHHHH
Confidence 357777777653
No 388
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.72 E-value=0.0017 Score=63.51 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
..++|+|+||+|||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999998654
No 389
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.72 E-value=0.0044 Score=67.18 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
..++..|+|+|+||+|||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345668999999999999999999999999999544
No 390
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.71 E-value=0.0078 Score=65.49 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC---------CCeEEeeccch-hhh-H------hhhh----------------
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFSCSGSEF-EEM-F------VGVG---------------- 301 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~---------~~fi~is~s~~-~~~-~------vg~~---------------- 301 (715)
....-+.++||||+|||+|+..++..+. ...++++.... ... . .+..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCCh
Confidence 3334588999999999999999886331 35577766541 110 0 0000
Q ss_pred ---HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 302 ---ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 302 ---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
...+..+........+.+|+||-|-+++...... ........+.+++..|..+....++.||.+.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 0112222222334568899999999886432211 1112334456676666666556677777654
No 391
>PRK06547 hypothetical protein; Provisional
Probab=96.71 E-value=0.0018 Score=64.30 Aligned_cols=36 Identities=36% Similarity=0.469 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
...+.-|++.|++|+|||++++.+++.++++++.++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 345667899999999999999999999998877553
No 392
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.70 E-value=0.0078 Score=74.51 Aligned_cols=189 Identities=20% Similarity=0.219 Sum_probs=102.6
Q ss_pred CCCeEEEEcCCCCChHHH-HHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHH---Hh-----------CCCeEE
Q 005066 256 LPKGVLLVGPPGTGKTML-ARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA---KK-----------RSPCII 320 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~L-AralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A---~~-----------~~P~IL 320 (715)
..++++++||||+|||+| .-++-.+.-..++.++.+.-.. +...++-+-+.. .. -.--||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 346899999999999995 5677778888888887664321 111222111111 00 012599
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc--------cCCCEEEEeecCCCCcccccccCCCCccc---ccccC
Q 005066 321 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK--------QNEGIIVIAATNFPESLDKALVRPGRFDR---HIVVP 389 (715)
Q Consensus 321 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~--------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~---~I~v~ 389 (715)
|.|||+ +...+.-.. +...-.+.+|+ +-.||- .-.++++.|++|.+...- ..--|.||-+ .|++.
T Consensus 1568 FcDeIn-Lp~~~~y~~-~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v~vf~~ 1643 (3164)
T COG5245 1568 FCDEIN-LPYGFEYYP-PTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRKPVFVFCC 1643 (3164)
T ss_pred EeeccC-CccccccCC-CceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcCceEEEec
Confidence 999998 432221111 10000111222 123332 235799999999876422 1111224443 35778
Q ss_pred CCCHHHHHHHHHHHhhhhccCC-------------cccHH--------HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005066 390 NPDVEGRRQIMESHMSKVLKAD-------------DVDLM--------IIARGTPGFSGADLANLVNIAALKAAMDGAKA 448 (715)
Q Consensus 390 ~Pd~~eR~~ILk~~l~~~~~~~-------------dvdl~--------~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 448 (715)
.|.......|.+.++.+..+-. .+.+- ......-||+|+||...++ +...++..+.+.
T Consensus 1644 ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr-~i~~yaeT~~~t 1722 (3164)
T COG5245 1644 YPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLR-AIFGYAETRIDT 1722 (3164)
T ss_pred CcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHH-HHHhHHhcCCCC
Confidence 9999999999988776542211 11111 0112235799999999887 444444434444
Q ss_pred cCHHHH
Q 005066 449 VTMADL 454 (715)
Q Consensus 449 It~edl 454 (715)
-...+|
T Consensus 1723 ~~~slI 1728 (3164)
T COG5245 1723 PDVSLI 1728 (3164)
T ss_pred CcHHHH
Confidence 444443
No 393
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.70 E-value=0.0073 Score=66.39 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=64.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccc-hh-----hhH--hhh----------------h---
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FE-----EMF--VGV----------------G--- 301 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~-~~-----~~~--vg~----------------~--- 301 (715)
.-++++|+||+|||.|+..+|-.. +.+.++++... |. +.. .+. .
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~~ 203 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQ 203 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHHHH
Confidence 347799999999999999887443 23577777654 11 100 000 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
...+..+........+.+|+||-|-++...... .........+.+++..|..+....++.||.+..
T Consensus 204 ~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 204 SELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 011222222234557899999999988653211 122233445777777777666667777776643
No 394
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.70 E-value=0.0021 Score=69.29 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC-----CCeEEeec-cchh-------hhHhhhhHHHHHHHHHHHHhCCCeEEEEc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSG-SEFE-------EMFVGVGARRVRDLFSAAKKRSPCIIFID 323 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~-----~~fi~is~-s~~~-------~~~vg~~~~~vr~lF~~A~~~~P~ILfID 323 (715)
.+++|++||+|+|||++++++.+.+. ..++.+.- .++. ............+++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 35899999999999999999998862 23333311 1111 00111122256677888888899999999
Q ss_pred Cch
Q 005066 324 EID 326 (715)
Q Consensus 324 EID 326 (715)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 994
No 395
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.69 E-value=0.045 Score=59.37 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCeEEEEcCchhhcCCCCCC------chHHHHHHHHHHHHHhhcc-ccCCCEEE--EeecCC---CC--cccccccCCC-
Q 005066 316 SPCIIFIDEIDAIGGSRNPK------DQQYMKMTLNQLLVELDGF-KQNEGIIV--IAATNF---PE--SLDKALVRPG- 380 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~~~------~~~~~~~~l~~LL~~Ld~~-~~~~~ViV--IaaTN~---p~--~LD~aLlRpg- 380 (715)
.|.++-||+++.+.....-. .....-.....|+..+.+- .-.++.+| +++|.. +. .++.+|....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 57888899999998753211 1122222333344332222 22344444 555542 22 3555554211
Q ss_pred -----Ccc-------------cccccCCCCHHHHHHHHHHHhhhhccC
Q 005066 381 -----RFD-------------RHIVVPNPDVEGRRQIMESHMSKVLKA 410 (715)
Q Consensus 381 -----RFd-------------~~I~v~~Pd~~eR~~ILk~~l~~~~~~ 410 (715)
-|. ..|.++..+.+|-..+++.+.......
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 121 156888999999999999998765443
No 396
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.68 E-value=0.0022 Score=70.20 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEe-eccchhh-----------hH--hhhhHHHHHHHHHHHHhCCCeE
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSC-SGSEFEE-----------MF--VGVGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~i-s~s~~~~-----------~~--vg~~~~~vr~lF~~A~~~~P~I 319 (715)
..+++|++|++|+|||++++++.....- .++.+ +..++.- .. .+...-...++++.+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3458999999999999999999988742 22222 1111110 00 0112234567888888899999
Q ss_pred EEEcCch
Q 005066 320 IFIDEID 326 (715)
Q Consensus 320 LfIDEID 326 (715)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999995
No 397
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.67 E-value=0.0066 Score=60.31 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=41.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHh-------------CCCeEEeeccchh----hhHh---h----------h---------
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA-------------GVPFFSCSGSEFE----EMFV---G----------V--------- 300 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el-------------~~~fi~is~s~~~----~~~v---g----------~--------- 300 (715)
++|+||||+|||+++-.++..+ +.++++++...-. ..+. . .
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 8899999999999999998755 2356666554321 1100 0 0
Q ss_pred ----------hHHHHHHHHHHHHh-CCCeEEEEcCchhhcCC
Q 005066 301 ----------GARRVRDLFSAAKK-RSPCIIFIDEIDAIGGS 331 (715)
Q Consensus 301 ----------~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~ 331 (715)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223445555555 57899999999999765
No 398
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.67 E-value=0.011 Score=59.89 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
|.-+++.|+||+|||++|+.++.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998765
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.66 E-value=0.015 Score=57.09 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=27.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccch
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 293 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~ 293 (715)
++++||||+|||+++..++..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6899999999999999998876 666777776543
No 400
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.66 E-value=0.0055 Score=76.34 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=91.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh--HhhhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~--~vg~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
.+||.||..+|||+....+|.+.|..|+.++-.+..+. |+|.-. .--..+.-.|... ..-|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccCc
Confidence 59999999999999999999999999999998776543 444211 1111223333222 3588899997442
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhc---------cccCCCEEEEeecCCCC------cccccccCCCCcccccccCCCCHH
Q 005066 330 GSRNPKDQQYMKMTLNQLLVELDG---------FKQNEGIIVIAATNFPE------SLDKALVRPGRFDRHIVVPNPDVE 394 (715)
Q Consensus 330 ~~r~~~~~~~~~~~l~~LL~~Ld~---------~~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~~I~v~~Pd~~ 394 (715)
...-..+|.||..-.. ..+.+++.++||-|+|- .|..|++. ||- .++|..-..+
T Consensus 969 --------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddiped 1037 (4600)
T COG5271 969 --------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDIPED 1037 (4600)
T ss_pred --------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccCcHH
Confidence 2244556666543211 13456788899999875 47788876 884 7788777788
Q ss_pred HHHHHHHHHh
Q 005066 395 GRRQIMESHM 404 (715)
Q Consensus 395 eR~~ILk~~l 404 (715)
+...||+..+
T Consensus 1038 Ele~ILh~rc 1047 (4600)
T COG5271 1038 ELEEILHGRC 1047 (4600)
T ss_pred HHHHHHhccC
Confidence 8888887655
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.65 E-value=0.032 Score=60.85 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 230 DEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 230 d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
+.+++.+.+.+.. +......-......|.-++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4455666644443 431111011122346678999999999999999999877 44555555543
No 402
>PRK08233 hypothetical protein; Provisional
Probab=96.64 E-value=0.0051 Score=60.37 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC-CCeEEeec
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG-VPFFSCSG 290 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~-~~fi~is~ 290 (715)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3577899999999999999999985 44554443
No 403
>PRK13764 ATPase; Provisional
Probab=96.63 E-value=0.0029 Score=73.98 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEe-eccch-----hhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSC-SGSEF-----EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~---~~fi~i-s~s~~-----~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
.+++|++||||+||||++++++..+. ..+..+ +..++ ...|... ..........+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 46899999999999999999998874 222222 11111 1111100 0011222223345679999999985
No 404
>PRK14528 adenylate kinase; Provisional
Probab=96.62 E-value=0.002 Score=64.46 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.+++.||||+|||++++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887654
No 405
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.62 E-value=0.015 Score=60.87 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCC--eEEeeccchhh---hH-----hh------hhHH---H----HHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEE---MF-----VG------VGAR---R----VRDLFSA 311 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~--fi~is~s~~~~---~~-----vg------~~~~---~----vr~lF~~ 311 (715)
..|-.+++.|++|||||++++.+...+... .+.+-+..... .| +. .... . +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345579999999999999999998776432 22221111111 11 00 0000 1 1111111
Q ss_pred HHh---CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccccccc
Q 005066 312 AKK---RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVV 388 (715)
Q Consensus 312 A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v 388 (715)
... ..+++|+||++.. + ......+.+++.. ...-++.+|..+...-.||+.++. -.+..+-+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~ 155 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIF 155 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEe
Confidence 111 2368999999732 1 1123345555542 234468888888888889988754 45555545
Q ss_pred CCCCHHHHHHHHHHH
Q 005066 389 PNPDVEGRRQIMESH 403 (715)
Q Consensus 389 ~~Pd~~eR~~ILk~~ 403 (715)
+ -+..++.-|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 4 3555555454444
No 406
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0051 Score=60.57 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=57.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchh---------------h--hHhh---------hhHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFE---------------E--MFVG---------VGARRVRDL 308 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~---------------~--~~vg---------~~~~~vr~l 308 (715)
...+.|.||+|+|||+|.+.+++.... --+.+++..+. + .+.+ .+-.+.+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 345889999999999999999986510 00111111000 0 0000 111223334
Q ss_pred HHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 309 FSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 309 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
+..+-...|.|+++||-..-. +......+.+++..+. .. +..+|.+|+.++.+
T Consensus 106 laral~~~p~illlDEPt~~L-------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGL-------DPESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCC-------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 555556789999999976432 2233444455554432 22 44566677665543
No 407
>PRK06696 uridine kinase; Validated
Probab=96.60 E-value=0.0047 Score=63.55 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
..|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 345678899999999999999999998 7788888777765
No 408
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.60 E-value=0.022 Score=59.16 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 005066 260 VLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~e 280 (715)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 409
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.60 E-value=0.016 Score=58.51 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA 278 (715)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0019 Score=63.04 Aligned_cols=28 Identities=39% Similarity=0.713 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
|-+.|||||||||+++-||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999975
No 411
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.59 E-value=0.0051 Score=67.24 Aligned_cols=82 Identities=26% Similarity=0.502 Sum_probs=55.1
Q ss_pred Cc-cCCCcHHHHHHHHHHHHHhcCchhHhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeeccchhhhHhh
Q 005066 223 FS-DVKGVDEAKQELEEIVHYLRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEEMFVG 299 (715)
Q Consensus 223 f~-dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~-~pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~s~~~~~~vg 299 (715)
|+ ++.|.++. |.++|++++...+ |.. ..+-++|.||+|+|||+|++.|.+-+ ..+++.+..+-..+.-..
T Consensus 59 f~~~~~G~~~~---i~~lV~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEET---IERLVNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHH---HHHHHHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 89999988 5556666655322 332 33468899999999999999998877 347776655555444344
Q ss_pred hhHHHHHHHHHH
Q 005066 300 VGARRVRDLFSA 311 (715)
Q Consensus 300 ~~~~~vr~lF~~ 311 (715)
.....+|..|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 445566666654
No 412
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.57 E-value=0.021 Score=60.91 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
...|+-++|+||||+|||+++..+|..+ |..+..+++..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3456778899999999999999998766 55565565543
No 413
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.57 E-value=0.0085 Score=64.10 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh----C-CCeEEeeccch
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA----G-VPFFSCSGSEF 293 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el----~-~~fi~is~s~~ 293 (715)
.++.++|+||+|+||||++..||..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998765 3 56666666553
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.56 E-value=0.015 Score=59.25 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~ 279 (715)
+-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.56 E-value=0.0021 Score=70.61 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=47.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEee-ccchhh-------h-H----hhhhHHHHHHHHHHHHhCCCe
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCS-GSEFEE-------M-F----VGVGARRVRDLFSAAKKRSPC 318 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is-~s~~~~-------~-~----vg~~~~~vr~lF~~A~~~~P~ 318 (715)
.+..+++|+.||+|+|||++++++...... .++.+. ..++.- . + .+...-...+++..+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 334568999999999999999999988742 222221 111100 0 0 011223456778888888999
Q ss_pred EEEEcCch
Q 005066 319 IIFIDEID 326 (715)
Q Consensus 319 ILfIDEID 326 (715)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999995
No 416
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.55 E-value=0.0099 Score=58.77 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchhh------h---H----------------hhh--hHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEE------M---F----------------VGV--GARR 304 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~~------~---~----------------vg~--~~~~ 304 (715)
......+.|.||+|+|||+|++.+++.... --+.+++..+.. . | ... +..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 334456899999999999999999987521 112223221110 0 0 000 0122
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
.+-.+..+-...|.++++||-..-. +......+.+++..+. . +..||.+|+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~L-------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGL-------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccC-------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 3333444556789999999975432 2234445555555542 2 34566677766544
No 417
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.54 E-value=0.0083 Score=69.86 Aligned_cols=106 Identities=27% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh-------CCC----eEEee------ccc-------------hhhhHh----
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVP----FFSCS------GSE-------------FEEMFV---- 298 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el-------~~~----fi~is------~s~-------------~~~~~v---- 298 (715)
..++...+|+.||+|||||+|.|+||+-. ..| .+.+. ... +.+..+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 34455569999999999999999999855 222 11111 001 111100
Q ss_pred ---h--h----------------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 005066 299 ---G--V----------------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN 357 (715)
Q Consensus 299 ---g--~----------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~ 357 (715)
| . +-++-|-.|...--++|.++||||.-.-. ++..+..+.+++.. .-
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL-------De~~e~~l~q~l~~-----~l 562 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL-------DEETEDRLYQLLKE-----EL 562 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc-------ChHHHHHHHHHHHh-----hC
Confidence 0 0 11233445656667899999999985432 34455556666643 23
Q ss_pred CCEEEEeecCCCC
Q 005066 358 EGIIVIAATNFPE 370 (715)
Q Consensus 358 ~~ViVIaaTN~p~ 370 (715)
.++.||..+.++.
T Consensus 563 p~~tvISV~Hr~t 575 (604)
T COG4178 563 PDATVISVGHRPT 575 (604)
T ss_pred CCCEEEEeccchh
Confidence 6678888877664
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.54 E-value=0.0024 Score=63.08 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=25.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-+++.||||+||||+++.++..+|.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999998665433
No 419
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.54 E-value=0.0065 Score=64.40 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHHhC---CCeEEee-ccchhh
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCS-GSEFEE 295 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk-gvLL~GPPGTGKT~LAralA~el~---~~fi~is-~s~~~~ 295 (715)
.+++++.-..+..+.|++++. .+. .+++.||+|+|||++++++...+. ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 457777666666666655443 122 489999999999999999987763 2344431 112110
Q ss_pred h-----Hhh-hhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 296 M-----FVG-VGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 296 ~-----~vg-~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
. .+. ............+....|.+|+|+|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0 000 111234556666677889999999995
No 420
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.54 E-value=0.0031 Score=68.30 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=47.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEee-ccchh--h-h----H-----hhhhHHHHHHHHHHHHhCCCe
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCS-GSEFE--E-M----F-----VGVGARRVRDLFSAAKKRSPC 318 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is-~s~~~--~-~----~-----vg~~~~~vr~lF~~A~~~~P~ 318 (715)
.....++++.||+|+|||++++++.+.+.- ..+.+. ..++. . . . .+...-.+.+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 444568999999999999999999987732 122221 11110 0 0 0 011123456677777788999
Q ss_pred EEEEcCch
Q 005066 319 IIFIDEID 326 (715)
Q Consensus 319 ILfIDEID 326 (715)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999995
No 421
>PRK02496 adk adenylate kinase; Provisional
Probab=96.53 E-value=0.0022 Score=63.62 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=26.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-+++.||||+|||++++.|+..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999876654
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.52 E-value=0.023 Score=65.47 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHH----hCCCeEEeeccc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGSE 292 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~e----l~~~fi~is~s~ 292 (715)
.....+|++||||||||+|+..++.+ .|-+.++++..+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 33456999999999999999988543 267888777653
No 423
>PRK14527 adenylate kinase; Provisional
Probab=96.52 E-value=0.0023 Score=64.05 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|+-++++||||+|||++|+.++..++.+.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3456799999999999999999999998765443
No 424
>PRK04040 adenylate kinase; Provisional
Probab=96.52 E-value=0.0026 Score=64.05 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh--CCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA--GVPFF 286 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el--~~~fi 286 (715)
|+-++++|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999999 55554
No 425
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.51 E-value=0.0065 Score=66.35 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
.+.+.|.|+||+|||+|++.|++..+.+++.-.+.++..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 347999999999999999999999999987766655443
No 426
>PRK10867 signal recognition particle protein; Provisional
Probab=96.51 E-value=0.028 Score=63.69 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhH----------hh----------hhHHHHHHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMF----------VG----------VGARRVRDLF 309 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~----------vg----------~~~~~vr~lF 309 (715)
...|.-++++||+|+||||++..+|..+ |..+..+++..+.... .+ ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457789999999999999887777654 6667777776443210 00 1123334455
Q ss_pred HHHHhCCCeEEEEcCchh
Q 005066 310 SAAKKRSPCIIFIDEIDA 327 (715)
Q Consensus 310 ~~A~~~~P~ILfIDEID~ 327 (715)
..++.....+|+||=...
T Consensus 177 ~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 566666677899887653
No 427
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.51 E-value=0.0023 Score=65.08 Aligned_cols=29 Identities=45% Similarity=0.844 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|++.||||+|||++|+.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776653
No 428
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.49 E-value=0.017 Score=55.91 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCChHH-HHHHHHHHhC----CCeEEeec
Q 005066 258 KGVLLVGPPGTGKTM-LARAIAGEAG----VPFFSCSG 290 (715)
Q Consensus 258 kgvLL~GPPGTGKT~-LAralA~el~----~~fi~is~ 290 (715)
+.+++.||+|||||+ ++..+...+. ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 589999999999999 5555555443 33555544
No 429
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.0076 Score=50.45 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHh-CCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA-GVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el-~~~fi~is 289 (715)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999986 34444444
No 430
>PF13245 AAA_19: Part of AAA domain
Probab=96.48 E-value=0.0044 Score=53.20 Aligned_cols=32 Identities=41% Similarity=0.525 Sum_probs=22.0
Q ss_pred eEEEEcCCCCChH-HHHHHHHHHh------CCCeEEeec
Q 005066 259 GVLLVGPPGTGKT-MLARAIAGEA------GVPFFSCSG 290 (715)
Q Consensus 259 gvLL~GPPGTGKT-~LAralA~el------~~~fi~is~ 290 (715)
-+++.|||||||| ++++.++..+ +..++.+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3566999999999 6666666655 445555543
No 431
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.47 E-value=0.012 Score=58.72 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
...-+.|.||.|+|||||.+++...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3345889999999999999999743
No 432
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.45 E-value=0.013 Score=57.54 Aligned_cols=103 Identities=31% Similarity=0.385 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCC-----------CeEEeecc------chhhhH----hh--hhHHHHHHHHH
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----------PFFSCSGS------EFEEMF----VG--VGARRVRDLFS 310 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~-----------~fi~is~s------~~~~~~----vg--~~~~~vr~lF~ 310 (715)
.....-+.|.||+|+|||+|++.+++.... .+.++... ...+.. .. .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 334446899999999999999999987621 01111100 011110 00 01123334444
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 311 AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 311 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
.+-...|.++++||-..-. +......+.+++..+ +..+|.+|++++
T Consensus 104 ral~~~p~~lllDEPt~~L-------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATSAL-------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCcccc-------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 5556789999999976432 222344445555443 245666776654
No 433
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.45 E-value=0.0087 Score=58.93 Aligned_cols=105 Identities=27% Similarity=0.378 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchh--------hh--Hh---------------hhhHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFE--------EM--FV---------------GVGARRVRDLF 309 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~--------~~--~v---------------g~~~~~vr~lF 309 (715)
..-+.|.||+|+|||+|.+.+++.... --+.+++.++. .. |+ -.+-.+-+-.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 345899999999999999999987521 01122221110 00 00 01112234445
Q ss_pred HHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 310 SAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 310 ~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
..+-...|.++++||--.-. +......+.+++..+. . .+..||.+|+..+.+
T Consensus 108 a~al~~~p~~lllDEPt~~L-------D~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~~ 159 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHL-------DVEGERALNQAIAALK---A-AGATRIVIAHRPETL 159 (173)
T ss_pred HHHHhcCCCEEEEECCcccc-------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH
Confidence 55556789999999975322 2233444555555442 2 245666677665543
No 434
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.45 E-value=0.016 Score=61.92 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=47.3
Q ss_pred CCCe-EEEEcCCCCChHHHHHHHHHHhCC----CeEEe---------eccchhh-hHhhhhHHHHHHHHHHHHhCCCeEE
Q 005066 256 LPKG-VLLVGPPGTGKTMLARAIAGEAGV----PFFSC---------SGSEFEE-MFVGVGARRVRDLFSAAKKRSPCII 320 (715)
Q Consensus 256 ~pkg-vLL~GPPGTGKT~LAralA~el~~----~fi~i---------s~s~~~~-~~vg~~~~~vr~lF~~A~~~~P~IL 320 (715)
.|+| ||.+||.|+||||..-++-...+. +.+.+ +-..+.. .-+|..-..+....+.|-...|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3556 777899999999999999888753 22322 2222222 1334444445555666667789999
Q ss_pred EEcCchh
Q 005066 321 FIDEIDA 327 (715)
Q Consensus 321 fIDEID~ 327 (715)
++-|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9999853
No 435
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0055 Score=60.23 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchhh------------------hHhh-------hhHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEE------------------MFVG-------VGARRVRD 307 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~~------------------~~vg-------~~~~~vr~ 307 (715)
....-+.|.||+|+|||+|.+.+++.... --+.+++..+.. .+.. .+-.+-+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl 105 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRI 105 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHH
Confidence 34446899999999999999999997621 012222211100 0000 00112222
Q ss_pred HHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 308 LFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 308 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
.+..+-...|.+|++||--.-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 106 ~la~al~~~p~llllDEP~~gL-------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 106 AIARALLRDPPILILDEATSAL-------DPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCC-------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 3444455789999999975322 2223444555555442 2 35677778776654
No 436
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.44 E-value=0.019 Score=61.04 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=60.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 304 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~ 304 (715)
+++-.+++.+.+-.+.+-|+.|. .++||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 57778888888888877776653 26999999999999999999999999999887654211 1223355
Q ss_pred HHHHHHHHH-hCCCeEEEEcCch
Q 005066 305 VRDLFSAAK-KRSPCIIFIDEID 326 (715)
Q Consensus 305 vr~lF~~A~-~~~P~ILfIDEID 326 (715)
++.++..|- +..|.+++|+|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 666666654 4568888887743
No 437
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0078 Score=64.35 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
++-++|.|+|||||||+|+.|+..+. .++.++...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHH
Confidence 34688999999999999999999983 344555555543
No 438
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.44 E-value=0.018 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~ 279 (715)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.44 E-value=0.0029 Score=64.60 Aligned_cols=29 Identities=45% Similarity=0.841 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|+++||||+|||++++.||..++++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999766653
No 440
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.43 E-value=0.0087 Score=60.40 Aligned_cols=43 Identities=30% Similarity=0.563 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeeccchhhh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEEM 296 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~s~~~~~ 296 (715)
...|.-+++.|+||+|||+++..+...+ +..++.++..+|...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3567889999999999999999999998 888899998887654
No 441
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0074 Score=59.43 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccchh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFE 294 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~~ 294 (715)
..|.-++|.|+||+|||++++.+++.+. ...+.++...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 3566799999999999999999999885 234555554443
No 442
>PRK13808 adenylate kinase; Provisional
Probab=96.42 E-value=0.0091 Score=65.21 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=27.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
-|+|+||||+|||++++.|+..++++.+.+ .++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~--gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST--GDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc--cHHH
Confidence 389999999999999999999998755544 4444
No 443
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.42 E-value=0.0096 Score=59.04 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
....-+.|.||+|+|||+|.+.+++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334468999999999999999999865
No 444
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.40 E-value=0.0055 Score=66.74 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee-ccchhhh------HhhhhHHHHHHHHHHHHhCCCeEEEEcC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS-GSEFEEM------FVGVGARRVRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is-~s~~~~~------~vg~~~~~vr~lF~~A~~~~P~ILfIDE 324 (715)
.+++|++|++|+|||++++++.... +..++.+- ..++.-. +.....-...+++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3589999999999999999999876 22333331 1121100 0011122456777777789999999999
Q ss_pred ch
Q 005066 325 ID 326 (715)
Q Consensus 325 ID 326 (715)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 94
No 445
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.37 E-value=0.0074 Score=67.05 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=44.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC-----CCeEEee-ccchh-----------hhHhhhhHHHHHHHHHHHHhCCCeEEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCS-GSEFE-----------EMFVGVGARRVRDLFSAAKKRSPCIIF 321 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~-----~~fi~is-~s~~~-----------~~~vg~~~~~vr~lF~~A~~~~P~ILf 321 (715)
.+|++||+|+||||+++++...+. ...+.+. ..++. ..-+|............+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988772 3344431 11111 011122222345566667778999999
Q ss_pred EcCch
Q 005066 322 IDEID 326 (715)
Q Consensus 322 IDEID 326 (715)
++|+.
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99995
No 446
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.37 E-value=0.019 Score=69.23 Aligned_cols=100 Identities=24% Similarity=0.343 Sum_probs=56.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---C--CCeEEeeccchh----hhHhhhhHHHHHHHHHHH----------HhCCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---G--VPFFSCSGSEFE----EMFVGVGARRVRDLFSAA----------KKRSPCI 319 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~--~~fi~is~s~~~----~~~vg~~~~~vr~lF~~A----------~~~~P~I 319 (715)
-++|+|+||||||++++++...+ + .+++.+..+.-. ....|..+..+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 68999999999999999996655 4 444443322111 111222233333333321 0123579
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 320 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
|+|||+..+. ...+..|+.. ......+++++-.+....+
T Consensus 420 lIvDEaSMvd-----------~~~~~~Ll~~---~~~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMMD-----------TWLALSLLAA---LPDHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccCC-----------HHHHHHHHHh---CCCCCEEEEECccccccCC
Confidence 9999998762 2234555543 3345568888866654433
No 447
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.015 Score=57.16 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
+.-+.|.|+||+|||++++.++..+ +..+..+++..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4468999999999999999999987 4456666665543
No 448
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.35 E-value=0.031 Score=63.14 Aligned_cols=72 Identities=21% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-------H--------hh-----hhHHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F--------VG-----VGARRVRDLFSA 311 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-------~--------vg-----~~~~~vr~lF~~ 311 (715)
..|.-++|+|++|+||||++..||..+ |..+..+++..+... + .. ......++.+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346679999999999999999999776 666666766543210 0 00 111223445556
Q ss_pred HHhCCCeEEEEcCch
Q 005066 312 AKKRSPCIIFIDEID 326 (715)
Q Consensus 312 A~~~~P~ILfIDEID 326 (715)
++.....+||||=..
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 655566789988664
No 449
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0028 Score=58.05 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el 281 (715)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 450
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.027 Score=58.70 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCC-CChHHHHHHHHHHhCCC---------eEEeeccchhhh-HhhhhHHHHHHHHHHHH----hCCCeE
Q 005066 255 KLPKGVLLVGPPG-TGKTMLARAIAGEAGVP---------FFSCSGSEFEEM-FVGVGARRVRDLFSAAK----KRSPCI 319 (715)
Q Consensus 255 ~~pkgvLL~GPPG-TGKT~LAralA~el~~~---------fi~is~s~~~~~-~vg~~~~~vr~lF~~A~----~~~P~I 319 (715)
+.....||.|..+ +||..++..++..+... +..+....-... --..+...+|++-+.+. ....-|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4455799999998 99999999888876331 222221110000 00123456666665543 234479
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHH
Q 005066 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399 (715)
Q Consensus 320 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~I 399 (715)
++||++|.+ ....-|.||..|+. +..++++|..|+.++.|.|.+++ |.. .+.++.|+...-.++
T Consensus 93 iII~~ae~m-----------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 93 AIIYSAELM-----------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNEL 156 (263)
T ss_pred EEEechHHh-----------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHHH
Confidence 999999988 34567899999884 66778888888889999999987 774 788999999888888
Q ss_pred HHHHhhhhccC
Q 005066 400 MESHMSKVLKA 410 (715)
Q Consensus 400 Lk~~l~~~~~~ 410 (715)
+...+......
T Consensus 157 ~~~~~~p~~~~ 167 (263)
T PRK06581 157 YSQFIQPIADN 167 (263)
T ss_pred HHHhccccccc
Confidence 77777655433
No 451
>PRK01184 hypothetical protein; Provisional
Probab=96.33 E-value=0.0034 Score=62.24 Aligned_cols=29 Identities=38% Similarity=0.641 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-|+|+||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888665
No 452
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0029 Score=62.38 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
-++++|.||||||++++.|+ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999887765
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.33 E-value=0.04 Score=63.74 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhHh------hh-----------------------
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV------GV----------------------- 300 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~v------g~----------------------- 300 (715)
.....-+||+|+||+|||+|+..++.+. |.+.++++..+-.+.+. |.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 3334459999999999999999876532 66777777654322110 00
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 301 -------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 301 -------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
....+..+-.......|..|+||-+..+...- .........+..++..+. ..++.+|.+++...
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~--d~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~~~ 178 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF--SNEAVVRRELRRLFAWLK----QKGVTAVITGERGD 178 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc--cCHHHHHHHHHHHHHHHH----hCCCEEEEEECCcc
Confidence 01112233334456678899999998864321 111212344555555443 23556666665443
No 454
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.33 E-value=0.011 Score=66.03 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~ 282 (715)
-++|+||||+|||+|++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 399999999999999999999864
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.023 Score=58.79 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH-Hh----CCCe--------------EEeeccchhhh---HhhhhHHHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAG-EA----GVPF--------------FSCSGSEFEEM---FVGVGARRVRDLFSAAKK 314 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~-el----~~~f--------------i~is~s~~~~~---~vg~~~~~vr~lF~~A~~ 314 (715)
..-++|.||.|+|||++.+.++. .. |.+. ..+...+-... +...--..+..+++.+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~-- 108 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNC-- 108 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhC--
Confidence 34689999999999999999987 22 2211 11111111110 1112224455555554
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 315 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
..+.+++|||+..=. ++.+ .......++..+. ...+..+|.+|.+.+..
T Consensus 109 ~~~sLvllDE~~~gT---~~~d---~~~i~~~il~~l~---~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 109 TSRSLVILDELGRGT---STHD---GIAIAYATLHYLL---EEKKCLVLFVTHYPSLG 157 (222)
T ss_pred CCCeEEEEccCCCCC---Chhh---HHHHHHHHHHHHH---hccCCeEEEEcccHHHH
Confidence 357899999985311 1111 1111223333332 22456777889877653
No 456
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.31 E-value=0.0099 Score=67.48 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=59.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHHhCCCeEE-eeccchhhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEAGVPFFS-CSGSEFEEM 296 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkg-vLL~GPPGTGKT~LAralA~el~~~fi~-is~s~~~~~ 296 (715)
...+|++++......+.+.+++. .|.| +|++||.|+|||++.-++..+++-+... ++..+=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45678888888777776666544 3556 6678999999999999999999665542 222221111
Q ss_pred -Hhhhh--------HHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 297 -FVGVG--------ARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 297 -~vg~~--------~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
..|.. .-.....++..-.+.|+||++.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 00100 0112233444556789999999995
No 457
>PLN02199 shikimate kinase
Probab=96.30 E-value=0.0076 Score=64.64 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
++|+|+|.+|+|||++++.+|+.+|++|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 48999999999999999999999999998765
No 458
>PLN02674 adenylate kinase
Probab=96.27 E-value=0.0051 Score=64.46 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
+.+..++|.||||+||||+++.||..++++.+ +..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 34567999999999999999999999986554 4455543
No 459
>PHA00012 I assembly protein
Probab=96.26 E-value=0.012 Score=63.62 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=63.0
Q ss_pred EEEEcCCCCChHHHHHH-HHHHh--CCCeEEeeccchhhhHh--hhhHH-----------HHHHHHHHHHh------CCC
Q 005066 260 VLLVGPPGTGKTMLARA-IAGEA--GVPFFSCSGSEFEEMFV--GVGAR-----------RVRDLFSAAKK------RSP 317 (715)
Q Consensus 260 vLL~GPPGTGKT~LAra-lA~el--~~~fi~is~s~~~~~~v--g~~~~-----------~vr~lF~~A~~------~~P 317 (715)
-+++|-||+|||+.|-. +...+ |. -+..|..-..+++. |..++ ..+++....+. ...
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr-~VaTNidL~le~~p~~g~~a~~~~~iripDkP~~~dl~~~G~~n~~ydep~g 82 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC-IVATNLNLRLHHLPQVGRFAKQPRVMRIPDKPTLEDLEAIGRGNLSYDESKN 82 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC-EEEeCCccchhhccccCccccCcceEeccCCCcHHHHHhhccccccCCCCCC
Confidence 57999999999986653 32222 33 34444433333331 11110 12233222221 234
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc
Q 005066 318 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 377 (715)
Q Consensus 318 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl 377 (715)
+|++|||.+.+++.|..+... .... .+.+.. ....++-+|.+|..|..+|+.++
T Consensus 83 sLlVlDEaq~~fp~R~~~sk~-p~~v-ie~l~~----hRh~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 83 GLLVLDECGTWFNSRSWNDKE-RQPV-IDWFLH----ARKLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred cEEEEECcccccCCCCcCcCC-cHHH-HHHHHH----hccCCceEEEEcCCHHHHhHHHH
Confidence 799999999999888765321 1111 222221 24567888889999999998774
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=96.25 E-value=0.0042 Score=60.75 Aligned_cols=29 Identities=41% Similarity=0.722 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
-|+|.|+||+|||++++.||..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 461
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.24 E-value=0.031 Score=55.82 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=27.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
|.|+|.+|+|||++++.++...+.+++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 679999999999999999998767765 44555444
No 462
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.24 E-value=0.0034 Score=60.33 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=27.2
Q ss_pred EEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 262 LVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 262 L~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
|.||||+|||++++.||.++|. ..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 6899999999999999999975 456666665543
No 463
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.012 Score=58.25 Aligned_cols=25 Identities=48% Similarity=0.729 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||+|+|||+|++.+++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 464
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.21 E-value=0.015 Score=61.43 Aligned_cols=106 Identities=22% Similarity=0.171 Sum_probs=62.8
Q ss_pred EEcCCCCChHHHHHHHHHHhC---------CCeEEeeccc-hhhh--------Hhhh------------------hHHHH
Q 005066 262 LVGPPGTGKTMLARAIAGEAG---------VPFFSCSGSE-FEEM--------FVGV------------------GARRV 305 (715)
Q Consensus 262 L~GPPGTGKT~LAralA~el~---------~~fi~is~s~-~~~~--------~vg~------------------~~~~v 305 (715)
|+||||+|||.|+-.+|-..- ...++++... |... +-.. -...+
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 899999999999999886553 3467776543 2111 1000 00111
Q ss_pred HHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 306 RDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 306 r~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
..+-.........+|+||-|-+++..... .+.......+..++..|..+....++.||.|..
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 12222223456689999999998753211 223445667777777777776667777776543
No 465
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.21 E-value=0.012 Score=67.64 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHHhC---CCeEEeec-cchh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEAG---VPFFSCSG-SEFE 294 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkg-vLL~GPPGTGKT~LAralA~el~---~~fi~is~-s~~~ 294 (715)
..+|+++.-.++..+.++.++. .|.| +|++||+|+|||++..++..++. ..++++.- -++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4577887767777666665543 2345 78999999999999998877764 33444321 1111
Q ss_pred hh-----Hhhh-hHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 295 EM-----FVGV-GARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 295 ~~-----~vg~-~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
-. .+.. .........+.+....|.||+|.|+-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 0000 01123344555567889999999995
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.21 E-value=0.028 Score=64.99 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------hh----------------------hHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV----------------------GARR 304 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g~----------------------~~~~ 304 (715)
....++++||||+|||+++..++.+. |.+.++++..+-.+.+. |. ....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 351 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDH 351 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHH
Confidence 33458899999999999999987654 67777776543222110 00 0112
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGG 330 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~ 330 (715)
+..+........+.+|+||-+..+..
T Consensus 352 ~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 352 LIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22333344556788999999998853
No 467
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.031 Score=62.05 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=56.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh--CCCeEEeeccchhhhHh------h--------hhHHHHHHHHHHHHhCCCeEEEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA--GVPFFSCSGSEFEEMFV------G--------VGARRVRDLFSAAKKRSPCIIFI 322 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el--~~~fi~is~s~~~~~~v------g--------~~~~~vr~lF~~A~~~~P~ILfI 322 (715)
-+||-|.||.|||||.-.++..+ ..+++++++.+-....- + ..+..+.++........|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 47788999999999888887766 34899999977544321 1 12345677888888899999999
Q ss_pred cCchhhcCCC
Q 005066 323 DEIDAIGGSR 332 (715)
Q Consensus 323 DEID~l~~~r 332 (715)
|-|..+....
T Consensus 175 DSIQT~~s~~ 184 (456)
T COG1066 175 DSIQTLYSEE 184 (456)
T ss_pred eccceeeccc
Confidence 9999998655
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.20 E-value=0.052 Score=61.46 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=47.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhh-------H---hh----------hhHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEM-------F---VG----------VGARRVRDLFS 310 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~-------~---vg----------~~~~~vr~lF~ 310 (715)
..|.-++++|++|+|||+++..+|..+ |..+..+++..+... + .+ .......+.+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887763 566777777644321 0 00 01123345555
Q ss_pred HHHhCCCeEEEEcCchh
Q 005066 311 AAKKRSPCIIFIDEIDA 327 (715)
Q Consensus 311 ~A~~~~P~ILfIDEID~ 327 (715)
.+......+|+||=...
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 56566667888886543
No 469
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.19 E-value=0.024 Score=62.81 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 230 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 230 d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+++++.+..+++.+.+ ..|..+++.||.|||||++.+++...+.
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4566666666554332 3566899999999999999999988773
No 470
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.18 E-value=0.011 Score=66.50 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
...+.|.|.|++|||||||+++|+..+|.+++.--+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~ 252 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYG 252 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeecc
Confidence 345679999999999999999999999988755433
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.16 E-value=0.022 Score=60.11 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+-|.||.|+|||||.|++++-+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 347899999999999999999865
No 472
>PF13479 AAA_24: AAA domain
Probab=96.16 E-value=0.0081 Score=61.48 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCe-EEeeccchh-hh------HhhhhHHHHHHHHHHH--HhCCCeEEEEcCch
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPF-FSCSGSEFE-EM------FVGVGARRVRDLFSAA--KKRSPCIIFIDEID 326 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~f-i~is~s~~~-~~------~vg~~~~~vr~lF~~A--~~~~P~ILfIDEID 326 (715)
+..++||||||+|||++|..+ +-|+ +.+..+... .. +.-..-..+.+.+..+ ....-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999988 4443 233222110 00 0001234455555443 23445799999998
Q ss_pred hh
Q 005066 327 AI 328 (715)
Q Consensus 327 ~l 328 (715)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 473
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.13 E-value=0.0085 Score=65.27 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee-ccchh---hh---HhhhhHHHHHHHHHHHHhCCCeEEEEcC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS-GSEFE---EM---FVGVGARRVRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is-~s~~~---~~---~vg~~~~~vr~lF~~A~~~~P~ILfIDE 324 (715)
.++++++|++|+|||+++++++... ...++.+. ..++. .. +.........+++..+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4589999999999999999999874 12222221 11111 00 1111123467788888889999999999
Q ss_pred ch
Q 005066 325 ID 326 (715)
Q Consensus 325 ID 326 (715)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 95
No 474
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.12 E-value=0.0067 Score=61.92 Aligned_cols=23 Identities=57% Similarity=0.654 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998766
No 475
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.11 E-value=0.0053 Score=59.57 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=26.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997654
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.11 E-value=0.017 Score=58.07 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
......+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344569999999999999999999876
No 477
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.09 E-value=0.0042 Score=60.39 Aligned_cols=30 Identities=37% Similarity=0.626 Sum_probs=22.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
|.|+|+||||||||++.|+.. |.+++.-.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~a 31 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYA 31 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TT
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecH
Confidence 789999999999999999998 888774433
No 478
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.035 Score=62.87 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccch
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEF 293 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~ 293 (715)
++.++|.||+|+||||++..||..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887654 345666666554
No 479
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.05 E-value=0.018 Score=61.27 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=37.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh-h--hHh-hhhHHHHHHHHHHHH---hCCCeEEEEcCchhh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE-E--MFV-GVGARRVRDLFSAAK---KRSPCIIFIDEIDAI 328 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~-~--~~v-g~~~~~vr~lF~~A~---~~~P~ILfIDEID~l 328 (715)
|+|+|.||+|||++|+.|+..+ +..+..++-..+. . .|. ...++.+|..+..+- -....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999998875 5667777654443 1 121 223444554444321 123479999998766
No 480
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.054 Score=57.88 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=69.1
Q ss_pred hCCCCCCeEE--EEcCCCCChHHHHHHHHHHh---CCCeEEeeccc-hhhhHhhhhHHH---------------HHHHHH
Q 005066 252 LGGKLPKGVL--LVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE-FEEMFVGVGARR---------------VRDLFS 310 (715)
Q Consensus 252 lg~~~pkgvL--L~GPPGTGKT~LAralA~el---~~~fi~is~s~-~~~~~vg~~~~~---------------vr~lF~ 310 (715)
+|+-+|+|.+ +|||+|+|||++|..++..+ +-..++++... |...+....... -..+..
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHH
Confidence 4666777755 79999999999999998776 33455555432 322221111111 111111
Q ss_pred H-HHhC--CCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 311 A-AKKR--SPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 311 ~-A~~~--~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
. .+.. ...+|++|-+-++.+.....+ .....+.++..+..|.+.....++.||.+..
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQ 194 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQ 194 (279)
T ss_pred HHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 1 1222 378999999988876543222 2344566677777777666667777776644
No 481
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.00 E-value=0.0065 Score=67.61 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=38.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+.+++|-.-.+.+++.|.+-.+ |||+.||||.||||+|+|+|.-+
T Consensus 243 k~~ledY~L~dkl~eRL~erae-----------------GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERAE-----------------GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhhc-----------------ceEEecCCCCChhHHHHHHHHHH
Confidence 5678888888888888886333 99999999999999999999866
No 482
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.053 Score=62.61 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
....+.|+||+|+|||+++..|+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 483
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.98 E-value=0.012 Score=59.32 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=23.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-------CCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el-------~~~fi~is~s 291 (715)
++|+.|++|+|||++.+.++..+ ++.++.+++.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 89999999999999999987765 3455555543
No 484
>PRK14526 adenylate kinase; Provisional
Probab=95.98 E-value=0.0068 Score=62.16 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=27.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
.++|.||||+|||++++.||..++.+++. ..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChHH
Confidence 37899999999999999999999876644 44443
No 485
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.95 E-value=0.019 Score=57.07 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
....+.|.||+|+|||+|.+.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458999999999999999999875
No 486
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.94 E-value=0.022 Score=63.09 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+||+||||||||+|++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999877
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.93 E-value=0.09 Score=54.83 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-----CCCe--------------EEeeccc-hhh--hHhhhhHHHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPF--------------FSCSGSE-FEE--MFVGVGARRVRDLFSAAKK 314 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-----~~~f--------------i~is~s~-~~~--~~vg~~~~~vr~lF~~A~~ 314 (715)
.+.++|+||..+|||++.|.++-.. |.++ ..+...+ ... .....--..+..+++.+.
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~- 121 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT- 121 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH---
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc-
Confidence 4579999999999999999997644 3211 1111111 110 012223355667776654
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCc
Q 005066 315 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 371 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~ 371 (715)
..++|+|||+-.= ....+.......++..+. ...+..+|.+|+..+.
T Consensus 122 -~~sLvliDE~g~g------T~~~eg~ai~~aile~l~---~~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 122 -EKSLVLIDELGRG------TNPEEGIAIAIAILEYLL---EKSGCFVIIATHFHEL 168 (235)
T ss_dssp -TTEEEEEESTTTT------SSHHHHHHHHHHHHHHHH---HTTT-EEEEEES-GGG
T ss_pred -cceeeecccccCC------CChhHHHHHHHHHHHHHH---HhccccEEEEeccchh
Confidence 3579999998521 122223333334443333 2235578889987764
No 488
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.024 Score=59.79 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.....+-|.|++||||||++|.+.+-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 3444688999999999999999998663
No 489
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.92 E-value=0.014 Score=69.79 Aligned_cols=28 Identities=36% Similarity=0.643 Sum_probs=23.4
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKG--VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkg--vLL~GPPGTGKT~LAralA~el 281 (715)
...|.| |-+.|++|||||||+|.+.+-.
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344445 9999999999999999998855
No 490
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.92 E-value=0.026 Score=60.86 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHH
Q 005066 229 VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDL 308 (715)
Q Consensus 229 ~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~l 308 (715)
.++.++.|.+++.+.-.+ ..+..+-++|+|+.|+|||++.+.|..-+|-....+..+.....+ +. .-
T Consensus 54 d~~~~~~l~~~lg~~L~~------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~ 120 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTG------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HR 120 (304)
T ss_pred CHHHHHHHHHHHhHHhcC------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CC
Confidence 345677777777763222 133456799999999999999999988887655443333322221 10 02
Q ss_pred HHHHHhCCCeEEEEcCch
Q 005066 309 FSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 309 F~~A~~~~P~ILfIDEID 326 (715)
|..+.-...-+++.||++
T Consensus 121 f~~a~l~gk~l~~~~E~~ 138 (304)
T TIGR01613 121 FGLARLEGKRAVIGDEVQ 138 (304)
T ss_pred chhhhhcCCEEEEecCCC
Confidence 444444555688999986
No 491
>PLN02459 probable adenylate kinase
Probab=95.91 E-value=0.0091 Score=63.08 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
..++|.||||+|||++++.+|..++++.+ +..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 45888999999999999999999986554 444443
No 492
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.89 E-value=0.0062 Score=61.42 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el 281 (715)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777776655
No 493
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.86 E-value=0.02 Score=54.63 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVP 284 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~ 284 (715)
..-++|.|+.|+|||+++|.+++.++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3468899999999999999999999865
No 494
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.86 E-value=0.045 Score=68.35 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=44.1
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC--cccccccCCCCcccccccCCCCHHH
Q 005066 318 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDVEG 395 (715)
Q Consensus 318 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~~e 395 (715)
-||+|||+..|.... ... +..++..|-..-..-+|.+|.+|.+|+ .|...++. -|...|.|..-+..+
T Consensus 1142 IVVIIDE~AdLm~~~----~ke----vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS~~D 1211 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV----GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 1211 (1355)
T ss_pred EEEEEcChHHHHhhh----hHH----HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCCHHH
Confidence 489999998775321 112 233333333334557899999999986 45544432 455566666666666
Q ss_pred HHHHHH
Q 005066 396 RRQIME 401 (715)
Q Consensus 396 R~~ILk 401 (715)
-..||.
T Consensus 1212 SrtILd 1217 (1355)
T PRK10263 1212 SRTILD 1217 (1355)
T ss_pred HHHhcC
Confidence 555553
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.84 E-value=0.019 Score=63.53 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=41.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC------CCeEEee-ccchhh------------hHhhhhHHHHHHHHHHHHhCCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG------VPFFSCS-GSEFEE------------MFVGVGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~------~~fi~is-~s~~~~------------~~vg~~~~~vr~lF~~A~~~~P~I 319 (715)
.++++||+|+||||+++++.+.+. ..++.+. ..++.- .-++............+....|.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~ 215 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHA 215 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCE
Confidence 589999999999999999998762 2232221 111110 001111112344444566678999
Q ss_pred EEEcCch
Q 005066 320 IFIDEID 326 (715)
Q Consensus 320 LfIDEID 326 (715)
+++.|+.
T Consensus 216 i~vGEiR 222 (358)
T TIGR02524 216 ILVGEAR 222 (358)
T ss_pred EeeeeeC
Confidence 9999985
No 496
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.79 E-value=0.032 Score=56.12 Aligned_cols=30 Identities=47% Similarity=0.844 Sum_probs=24.6
Q ss_pred hCCCCCCe--EEEEcCCCCChHHHHHHHHHHh
Q 005066 252 LGGKLPKG--VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 252 lg~~~pkg--vLL~GPPGTGKT~LAralA~el 281 (715)
.....++| ++|+||+|.|||+|.|.|..+.
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455555 8899999999999999998876
No 497
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.78 E-value=0.0098 Score=58.17 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
|.-|+|+|.||+|||++|++|...+ +.+.+.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3468899999999999999998876 77888887765543
No 498
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.78 E-value=0.02 Score=60.40 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=26.7
Q ss_pred hhhCCCCCCe--EEEEcCCCCChHHHHHHHHHHh
Q 005066 250 TRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 250 ~~lg~~~pkg--vLL~GPPGTGKT~LAralA~el 281 (715)
+.+....|+| +.+.||.|.||||+.|-+.+.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 3456677877 8899999999999999998765
No 499
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.22 Score=55.40 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=33.7
Q ss_pred ccccCCCCHHHHHHHHHHHhhhhccCCccc----HHHHHhcCCCCCHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMESHMSKVLKADDVD----LMIIARGTPGFSGADLANLV 434 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd----l~~la~~t~G~sgadI~~lv 434 (715)
.|+++.++.+|-.+++..+++......+++ ...+--+. +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 478899999999999999997654333333 33333333 67887777776
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.0099 Score=59.32 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
..++|.||+|+||||+++.|+...+.+|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 368899999999999999999988765543
Done!