Query 005066
Match_columns 715
No_of_seqs 648 out of 3957
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 5.8E-85 2E-89 734.1 47.2 435 218-654 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-81 4.7E-86 710.5 42.3 434 219-656 26-470 (499)
3 4b4t_J 26S protease regulatory 100.0 7.4E-54 2.5E-58 469.6 27.3 248 218-465 142-393 (405)
4 4b4t_L 26S protease subunit RP 100.0 1E-53 3.4E-58 474.7 26.9 352 98-464 53-425 (437)
5 4b4t_I 26S protease regulatory 100.0 7.4E-53 2.5E-57 463.1 25.7 300 153-465 117-427 (437)
6 4b4t_H 26S protease regulatory 100.0 6.3E-52 2.2E-56 459.6 26.6 304 153-469 144-458 (467)
7 4b4t_M 26S protease regulatory 100.0 1.1E-50 3.8E-55 449.9 25.5 247 218-464 175-425 (434)
8 4b4t_K 26S protease regulatory 100.0 1.1E-49 3.7E-54 441.6 26.5 246 218-463 166-416 (428)
9 2di4_A Zinc protease, cell div 100.0 4.7E-50 1.6E-54 410.5 17.9 195 462-656 1-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 3.8E-44 1.3E-48 422.8 8.8 246 218-463 471-745 (806)
11 3cf2_A TER ATPase, transitiona 100.0 1.6E-42 5.5E-47 409.0 18.5 248 218-465 198-463 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 3.5E-38 1.2E-42 325.7 27.8 248 218-465 6-256 (257)
13 2x8a_A Nuclear valosin-contain 100.0 1.2E-38 4E-43 334.8 21.9 246 218-463 4-266 (274)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.1E-38 2.1E-42 322.7 21.1 255 219-473 1-261 (262)
15 3cf0_A Transitional endoplasmi 100.0 1.7E-37 5.9E-42 329.4 21.4 245 218-462 9-282 (301)
16 3h4m_A Proteasome-activating n 100.0 2.9E-36 9.9E-41 315.1 27.0 247 218-464 11-261 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 3E-36 1E-40 323.3 24.5 224 218-444 6-233 (322)
18 3eie_A Vacuolar protein sortin 100.0 4.2E-36 1.5E-40 321.5 20.5 243 218-463 12-300 (322)
19 1ixz_A ATP-dependent metallopr 100.0 4E-35 1.4E-39 302.2 26.9 241 218-458 10-253 (254)
20 2qp9_X Vacuolar protein sortin 100.0 3.6E-35 1.2E-39 319.0 22.2 243 218-463 45-333 (355)
21 3hu3_A Transitional endoplasmi 100.0 6.9E-35 2.4E-39 329.4 25.3 245 219-463 199-461 (489)
22 1iy2_A ATP-dependent metallopr 100.0 8.2E-34 2.8E-38 297.0 27.2 240 219-458 35-277 (278)
23 2r62_A Cell division protease 100.0 1.7E-36 5.7E-41 314.4 4.6 249 218-466 5-258 (268)
24 2zan_A Vacuolar protein sortin 100.0 6E-34 2E-38 318.4 20.6 224 218-444 128-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 9.1E-32 3.1E-36 292.3 24.8 242 219-463 79-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 3.3E-32 1.1E-36 286.3 19.4 241 218-461 15-272 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 4.5E-31 1.5E-35 289.6 22.4 242 218-462 109-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 6.4E-34 2.2E-38 339.2 -1.3 228 218-445 471-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 1.2E-30 4E-35 276.3 6.2 226 252-492 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 2.3E-28 7.8E-33 291.5 24.1 246 218-463 198-461 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.9E-26 6.3E-31 258.4 1.2 202 218-436 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.6E-22 5.5E-27 213.1 15.5 222 225-455 32-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 4.3E-22 1.5E-26 214.9 17.4 251 219-494 39-361 (368)
34 3pfi_A Holliday junction ATP-d 99.9 1.6E-20 5.4E-25 200.7 22.6 214 219-461 24-254 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 3.8E-20 1.3E-24 194.0 15.8 236 224-461 15-299 (310)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 1.5E-19 5.3E-24 191.3 19.7 215 219-461 7-238 (324)
37 1g41_A Heat shock protein HSLU 99.8 1.6E-20 5.5E-25 208.7 6.4 170 224-402 15-190 (444)
38 2v1u_A Cell division control p 99.8 2.8E-18 9.4E-23 184.7 22.3 226 220-462 15-277 (387)
39 1d2n_A N-ethylmaleimide-sensit 99.8 4.8E-19 1.6E-23 184.1 15.7 224 223-459 32-262 (272)
40 3m6a_A ATP-dependent protease 99.8 8.9E-20 3.1E-24 208.6 10.1 223 221-461 78-341 (543)
41 3hws_A ATP-dependent CLP prote 99.8 9E-19 3.1E-23 189.9 16.0 218 225-444 16-325 (363)
42 2z4s_A Chromosomal replication 99.8 1E-17 3.5E-22 186.9 20.8 221 218-462 99-333 (440)
43 1g8p_A Magnesium-chelatase 38 99.8 6.2E-18 2.1E-22 180.7 17.6 220 218-464 18-325 (350)
44 2chg_A Replication factor C sm 99.8 2.4E-17 8.1E-22 162.4 20.4 201 219-459 12-224 (226)
45 3u61_B DNA polymerase accessor 99.8 5.8E-18 2E-22 179.9 15.1 202 218-459 20-235 (324)
46 1l8q_A Chromosomal replication 99.7 1.9E-17 6.4E-22 176.3 18.6 198 218-440 5-214 (324)
47 3pvs_A Replication-associated 99.7 1E-17 3.5E-22 187.3 17.0 205 219-461 21-244 (447)
48 2r44_A Uncharacterized protein 99.7 5.2E-18 1.8E-22 181.0 13.2 213 223-464 26-300 (331)
49 1njg_A DNA polymerase III subu 99.7 6.8E-17 2.3E-21 160.7 19.9 202 219-458 18-248 (250)
50 2qby_B CDC6 homolog 3, cell di 99.7 3.1E-17 1.1E-21 177.3 18.5 214 223-462 19-271 (384)
51 1jbk_A CLPB protein; beta barr 99.7 3.5E-18 1.2E-22 164.5 9.9 159 220-400 18-194 (195)
52 1r6b_X CLPA protein; AAA+, N-t 99.7 4.4E-17 1.5E-21 193.0 19.8 221 220-462 182-434 (758)
53 1sxj_A Activator 1 95 kDa subu 99.7 2.9E-17 9.9E-22 186.7 16.7 221 219-459 34-272 (516)
54 3bos_A Putative DNA replicatio 99.7 5.2E-17 1.8E-21 163.1 16.6 206 219-459 23-241 (242)
55 1in4_A RUVB, holliday junction 99.7 3.7E-16 1.3E-20 167.9 24.2 214 220-462 21-251 (334)
56 2qby_A CDC6 homolog 1, cell di 99.7 1.8E-16 6E-21 170.3 21.0 226 219-462 15-273 (386)
57 1um8_A ATP-dependent CLP prote 99.7 5.5E-17 1.9E-21 176.5 15.5 231 225-458 22-362 (376)
58 4fcw_A Chaperone protein CLPB; 99.7 5.3E-17 1.8E-21 170.8 14.4 203 224-442 17-279 (311)
59 1fnn_A CDC6P, cell division co 99.7 5.9E-16 2E-20 167.1 22.9 222 220-462 13-275 (389)
60 3te6_A Regulatory protein SIR3 99.7 1.1E-17 3.9E-22 178.8 8.3 160 226-407 22-214 (318)
61 3pxg_A Negative regulator of g 99.7 1.3E-16 4.4E-21 179.3 16.2 203 220-459 176-404 (468)
62 1qvr_A CLPB protein; coiled co 99.7 2E-16 6.8E-21 190.0 18.4 203 220-444 166-395 (854)
63 1sxj_D Activator 1 41 kDa subu 99.7 2.9E-16 9.9E-21 167.7 16.7 206 219-459 32-261 (353)
64 3pxi_A Negative regulator of g 99.7 2.9E-16 1E-20 186.1 17.0 196 224-440 491-723 (758)
65 3pxi_A Negative regulator of g 99.7 3.3E-16 1.1E-20 185.7 17.0 189 220-445 176-389 (758)
66 2p65_A Hypothetical protein PF 99.7 1.4E-16 5E-21 153.2 10.1 151 220-392 18-187 (187)
67 1r6b_X CLPA protein; AAA+, N-t 99.7 6.9E-16 2.3E-20 182.8 16.7 195 224-440 458-714 (758)
68 2chq_A Replication factor C sm 99.7 6E-16 2E-20 162.5 14.2 205 218-458 11-223 (319)
69 1jr3_A DNA polymerase III subu 99.6 3.5E-15 1.2E-19 160.5 19.5 202 219-458 11-241 (373)
70 1sxj_B Activator 1 37 kDa subu 99.6 3E-15 1E-19 157.4 18.4 201 219-459 16-229 (323)
71 2bjv_A PSP operon transcriptio 99.6 1.5E-15 5.1E-20 156.9 12.1 204 221-454 3-250 (265)
72 1iqp_A RFCS; clamp loader, ext 99.6 7.2E-15 2.5E-19 154.8 17.1 205 218-458 19-231 (327)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.9E-16 1.3E-20 176.6 7.5 209 225-462 23-286 (500)
74 1ojl_A Transcriptional regulat 99.6 2.9E-15 9.8E-20 159.2 9.7 201 224-454 2-245 (304)
75 1qvr_A CLPB protein; coiled co 99.6 1.3E-14 4.3E-19 174.3 15.3 203 223-441 557-819 (854)
76 3f9v_A Minichromosome maintena 99.6 1.6E-15 5.3E-20 175.3 5.9 220 224-461 295-587 (595)
77 1sxj_C Activator 1 40 kDa subu 99.5 4.3E-14 1.5E-18 151.6 15.9 205 219-458 20-236 (340)
78 1sxj_E Activator 1 40 kDa subu 99.5 7.1E-14 2.4E-18 149.7 14.4 190 218-439 8-242 (354)
79 1w5s_A Origin recognition comp 99.5 6.4E-13 2.2E-17 144.5 20.3 229 220-462 18-294 (412)
80 3k1j_A LON protease, ATP-depen 99.4 7E-13 2.4E-17 153.4 14.7 216 218-460 35-374 (604)
81 3n70_A Transport activator; si 99.4 1.5E-13 5.1E-18 129.8 6.6 112 225-369 2-116 (145)
82 3co5_A Putative two-component 99.4 1.4E-13 4.7E-18 129.8 4.1 112 225-369 5-116 (143)
83 1a5t_A Delta prime, HOLB; zinc 99.4 6.4E-12 2.2E-16 134.8 16.8 160 253-436 20-207 (334)
84 3cmw_A Protein RECA, recombina 99.4 7.3E-13 2.5E-17 166.4 10.0 151 218-369 1014-1218(1706)
85 3kw6_A 26S protease regulatory 99.3 5.7E-12 2E-16 107.0 9.8 75 389-463 1-75 (78)
86 2krk_A 26S protease regulatory 99.3 9.3E-12 3.2E-16 108.0 9.5 78 387-464 7-84 (86)
87 3vlf_B 26S protease regulatory 99.3 1E-11 3.4E-16 108.2 8.7 79 392-470 2-80 (88)
88 2gno_A DNA polymerase III, gam 99.2 3E-11 1E-15 128.5 13.1 142 228-404 1-152 (305)
89 4akg_A Glutathione S-transfera 99.2 5E-11 1.7E-15 155.7 15.2 139 257-407 1267-1434(2695)
90 1ny5_A Transcriptional regulat 99.2 8.6E-11 2.9E-15 128.8 11.2 205 223-457 136-383 (387)
91 3ec2_A DNA replication protein 99.1 1.6E-10 5.6E-15 112.1 11.7 134 219-370 5-144 (180)
92 3aji_B S6C, proteasome (prosom 99.1 3.3E-10 1.1E-14 97.2 8.0 74 392-465 2-75 (83)
93 2dzn_B 26S protease regulatory 99.0 2.5E-10 8.4E-15 97.9 4.1 73 394-466 1-73 (82)
94 2w58_A DNAI, primosome compone 99.0 2E-09 6.9E-14 106.0 11.0 103 220-329 21-128 (202)
95 3f8t_A Predicted ATPase involv 98.9 1.8E-09 6E-14 120.1 10.6 210 226-462 215-484 (506)
96 3dzd_A Transcriptional regulat 98.9 3.7E-09 1.3E-13 115.1 10.7 191 224-441 129-361 (368)
97 2fna_A Conserved hypothetical 98.8 1.7E-07 5.7E-12 99.1 21.2 188 221-436 10-252 (357)
98 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.3E-09 4.5E-14 116.2 4.3 117 257-376 123-242 (331)
99 2kjq_A DNAA-related protein; s 98.8 5.3E-09 1.8E-13 99.4 7.1 105 256-388 35-145 (149)
100 2qgz_A Helicase loader, putati 98.7 3.5E-09 1.2E-13 112.5 3.8 101 220-328 120-226 (308)
101 1svm_A Large T antigen; AAA+ f 98.6 2.8E-08 9.6E-13 108.5 7.6 120 252-390 164-284 (377)
102 2qen_A Walker-type ATPase; unk 98.6 9.2E-07 3.2E-11 93.2 19.0 189 221-435 9-247 (350)
103 2r2a_A Uncharacterized protein 98.6 2.8E-08 9.7E-13 99.2 5.3 129 257-394 5-156 (199)
104 4akg_A Glutathione S-transfera 98.6 5.2E-07 1.8E-11 118.5 17.5 127 257-401 645-790 (2695)
105 3vkg_A Dynein heavy chain, cyt 98.5 4.7E-07 1.6E-11 119.6 15.8 139 257-407 1304-1472(3245)
106 3cmu_A Protein RECA, recombina 98.4 7E-07 2.4E-11 114.0 12.4 113 254-366 1424-1561(2050)
107 1tue_A Replication protein E1; 98.3 6.2E-07 2.1E-11 89.8 6.0 30 257-286 58-87 (212)
108 2c9o_A RUVB-like 1; hexameric 98.2 2.8E-06 9.5E-11 94.8 9.7 129 317-462 296-438 (456)
109 1jr3_D DNA polymerase III, del 98.1 2.3E-05 8E-10 83.5 13.2 178 255-461 16-209 (343)
110 3vkg_A Dynein heavy chain, cyt 98.0 1.4E-05 4.7E-10 106.0 12.1 126 258-401 605-750 (3245)
111 1u0j_A DNA replication protein 98.0 7.4E-06 2.5E-10 85.2 7.0 27 257-283 104-130 (267)
112 1ye8_A Protein THEP1, hypothet 97.9 3.3E-05 1.1E-09 75.3 10.4 28 259-286 2-29 (178)
113 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.9E-05 1.3E-09 75.9 9.8 37 255-291 21-60 (235)
114 1n0w_A DNA repair protein RAD5 97.9 3.4E-05 1.2E-09 77.2 9.1 115 255-369 22-174 (243)
115 2cvh_A DNA repair and recombin 97.8 4.6E-05 1.6E-09 75.0 8.7 37 256-292 19-55 (220)
116 1xp8_A RECA protein, recombina 97.8 9.5E-05 3.2E-09 80.3 11.5 112 255-366 72-208 (366)
117 1v5w_A DMC1, meiotic recombina 97.7 6.6E-05 2.3E-09 80.6 9.0 109 259-367 124-272 (343)
118 2z43_A DNA repair and recombin 97.7 6E-05 2E-09 80.2 8.6 112 255-366 105-255 (324)
119 3hr8_A Protein RECA; alpha and 97.7 9.7E-05 3.3E-09 80.0 9.9 107 259-365 63-194 (356)
120 2zr9_A Protein RECA, recombina 97.7 0.0001 3.5E-09 79.5 9.6 74 257-330 61-153 (349)
121 3cmu_A Protein RECA, recombina 97.7 0.0001 3.6E-09 94.4 10.8 115 254-368 729-868 (2050)
122 1z6t_A APAF-1, apoptotic prote 97.6 0.00055 1.9E-08 78.0 15.9 171 223-432 123-326 (591)
123 1qhx_A CPT, protein (chloramph 97.6 0.00013 4.4E-09 69.7 8.3 38 257-294 3-40 (178)
124 3upu_A ATP-dependent DNA helic 97.6 0.00015 5E-09 80.8 9.6 55 215-281 15-69 (459)
125 2ehv_A Hypothetical protein PH 97.5 0.00028 9.4E-09 70.8 10.3 113 254-372 27-185 (251)
126 1u94_A RECA protein, recombina 97.5 0.00012 3.9E-09 79.4 7.9 77 254-330 60-155 (356)
127 4a74_A DNA repair and recombin 97.5 0.00014 4.7E-09 72.1 7.3 25 257-281 25-49 (231)
128 3sfz_A APAF-1, apoptotic pepti 97.5 0.0014 4.6E-08 80.6 17.6 173 222-431 122-325 (1249)
129 3lda_A DNA repair protein RAD5 97.5 0.00029 9.8E-09 77.5 10.3 114 255-368 176-327 (400)
130 1pzn_A RAD51, DNA repair and r 97.5 0.00021 7.3E-09 77.0 8.5 114 256-369 130-286 (349)
131 2dr3_A UPF0273 protein PH0284; 97.4 0.00058 2E-08 68.2 10.6 37 255-291 21-60 (247)
132 2i1q_A DNA repair and recombin 97.4 0.00021 7E-09 75.7 6.8 110 257-366 98-256 (322)
133 3trf_A Shikimate kinase, SK; a 97.4 0.00012 4.1E-09 70.5 4.5 33 257-289 5-37 (185)
134 3cmw_A Protein RECA, recombina 97.4 0.00034 1.1E-08 88.8 9.7 77 254-330 729-824 (1706)
135 3io5_A Recombination and repai 97.3 0.00075 2.6E-08 71.8 10.4 112 254-365 24-168 (333)
136 1gvn_B Zeta; postsegregational 97.3 0.00047 1.6E-08 72.2 8.7 60 230-293 10-69 (287)
137 2p5t_B PEZT; postsegregational 97.3 0.00064 2.2E-08 69.4 9.2 61 230-294 9-69 (253)
138 3vaa_A Shikimate kinase, SK; s 97.2 0.00019 6.4E-09 70.4 4.6 35 255-289 23-57 (199)
139 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.7E-09 69.1 4.4 34 255-288 3-36 (193)
140 2r6a_A DNAB helicase, replicat 97.2 0.001 3.6E-08 73.9 10.2 39 253-291 199-241 (454)
141 1g41_A Heat shock protein HSLU 97.2 0.0024 8.2E-08 71.0 12.8 93 304-401 240-346 (444)
142 2zts_A Putative uncharacterize 97.1 0.00062 2.1E-08 68.1 7.3 36 256-291 29-68 (251)
143 1nlf_A Regulatory protein REPA 97.1 0.0026 8.7E-08 65.7 12.0 25 257-281 30-54 (279)
144 3kb2_A SPBC2 prophage-derived 97.1 0.00036 1.2E-08 65.7 4.6 31 259-289 3-33 (173)
145 2b8t_A Thymidine kinase; deoxy 97.1 0.00068 2.3E-08 68.6 6.7 69 259-328 14-101 (223)
146 2iyv_A Shikimate kinase, SK; t 97.1 0.00035 1.2E-08 67.2 4.3 31 259-289 4-34 (184)
147 3iij_A Coilin-interacting nucl 97.0 0.00034 1.2E-08 67.1 4.1 33 256-288 10-42 (180)
148 1cr0_A DNA primase/helicase; R 97.0 0.00077 2.6E-08 70.1 7.0 38 253-290 31-72 (296)
149 2cdn_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 67.5 4.9 35 254-288 17-51 (201)
150 1via_A Shikimate kinase; struc 97.0 0.00034 1.2E-08 66.9 3.8 30 259-288 6-35 (175)
151 2r8r_A Sensor protein; KDPD, P 97.0 0.0049 1.7E-07 62.4 12.4 32 259-290 8-42 (228)
152 1y63_A LMAJ004144AAA protein; 97.0 0.00038 1.3E-08 67.4 4.1 33 257-289 10-43 (184)
153 4gp7_A Metallophosphoesterase; 97.0 0.00065 2.2E-08 65.2 5.7 20 257-276 9-28 (171)
154 1zuh_A Shikimate kinase; alpha 97.0 0.00043 1.5E-08 65.6 4.3 31 258-288 8-38 (168)
155 2q6t_A DNAB replication FORK h 97.0 0.0021 7.2E-08 71.2 10.3 39 253-291 196-238 (444)
156 1kag_A SKI, shikimate kinase I 97.0 0.00055 1.9E-08 64.9 4.7 31 257-287 4-34 (173)
157 1zp6_A Hypothetical protein AT 96.9 0.00043 1.5E-08 66.8 3.8 40 254-293 6-45 (191)
158 1tev_A UMP-CMP kinase; ploop, 96.9 0.00044 1.5E-08 66.4 3.8 32 257-288 3-34 (196)
159 1qf9_A UMP/CMP kinase, protein 96.9 0.0005 1.7E-08 65.9 4.1 33 256-288 5-37 (194)
160 3e1s_A Exodeoxyribonuclease V, 96.9 0.00082 2.8E-08 77.2 6.6 97 258-368 205-317 (574)
161 2a5y_B CED-4; apoptosis; HET: 96.9 0.0048 1.6E-07 70.1 12.6 144 227-404 131-306 (549)
162 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0015 5.3E-08 66.9 7.6 38 257-294 4-44 (260)
163 2c95_A Adenylate kinase 1; tra 96.9 0.0006 2E-08 65.8 4.2 33 257-289 9-41 (196)
164 3jvv_A Twitching mobility prot 96.9 0.0018 6.2E-08 70.0 8.3 68 259-326 125-206 (356)
165 3lw7_A Adenylate kinase relate 96.9 0.00052 1.8E-08 64.3 3.6 29 259-288 3-31 (179)
166 1aky_A Adenylate kinase; ATP:A 96.9 0.00064 2.2E-08 67.5 4.4 33 256-288 3-35 (220)
167 2orw_A Thymidine kinase; TMTK, 96.9 0.00052 1.8E-08 67.1 3.6 31 258-288 4-37 (184)
168 3t61_A Gluconokinase; PSI-biol 96.9 0.00079 2.7E-08 65.8 4.9 33 257-289 18-50 (202)
169 1e6c_A Shikimate kinase; phosp 96.8 0.00067 2.3E-08 64.2 4.0 31 258-288 3-33 (173)
170 2ius_A DNA translocase FTSK; n 96.8 0.0042 1.4E-07 70.2 11.1 75 317-401 297-374 (512)
171 2iut_A DNA translocase FTSK; n 96.8 0.0042 1.4E-07 70.9 11.1 74 318-401 345-420 (574)
172 2pez_A Bifunctional 3'-phospho 96.8 0.00085 2.9E-08 64.3 4.6 37 256-292 4-43 (179)
173 3bh0_A DNAB-like replicative h 96.8 0.0046 1.6E-07 65.3 10.7 39 253-291 64-105 (315)
174 2vli_A Antibiotic resistance p 96.8 0.00068 2.3E-08 64.7 3.8 30 257-286 5-34 (183)
175 2ze6_A Isopentenyl transferase 96.8 0.00082 2.8E-08 68.9 4.6 33 259-291 3-35 (253)
176 2bwj_A Adenylate kinase 5; pho 96.8 0.00071 2.4E-08 65.4 3.9 32 257-288 12-43 (199)
177 1ly1_A Polynucleotide kinase; 96.8 0.00061 2.1E-08 64.6 3.3 30 257-286 2-32 (181)
178 1kht_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 65.0 3.5 25 258-282 4-28 (192)
179 1vma_A Cell division protein F 96.8 0.0047 1.6E-07 65.3 10.2 39 254-292 101-142 (306)
180 3be4_A Adenylate kinase; malar 96.7 0.00071 2.4E-08 67.3 3.7 31 258-288 6-36 (217)
181 3dl0_A Adenylate kinase; phosp 96.7 0.00083 2.8E-08 66.3 4.0 30 259-288 2-31 (216)
182 1zd8_A GTP:AMP phosphotransfer 96.7 0.00078 2.7E-08 67.3 3.8 33 256-288 6-38 (227)
183 2pt5_A Shikimate kinase, SK; a 96.7 0.00092 3.1E-08 63.0 4.0 30 259-288 2-31 (168)
184 3cm0_A Adenylate kinase; ATP-b 96.7 0.00081 2.8E-08 64.5 3.7 31 258-288 5-35 (186)
185 3fb4_A Adenylate kinase; psych 96.7 0.0009 3.1E-08 66.0 4.1 30 259-288 2-31 (216)
186 3dm5_A SRP54, signal recogniti 96.7 0.0054 1.8E-07 68.1 10.7 71 256-326 99-192 (443)
187 1ak2_A Adenylate kinase isoenz 96.7 0.001 3.4E-08 66.9 4.5 32 257-288 16-47 (233)
188 1ukz_A Uridylate kinase; trans 96.7 0.001 3.5E-08 64.9 4.2 33 257-289 15-47 (203)
189 3tlx_A Adenylate kinase 2; str 96.7 0.00095 3.3E-08 67.8 4.1 34 255-288 27-60 (243)
190 2fz4_A DNA repair protein RAD2 96.7 0.0078 2.7E-07 60.8 10.8 33 259-291 110-142 (237)
191 3umf_A Adenylate kinase; rossm 96.6 0.00095 3.3E-08 67.2 3.7 39 254-294 26-64 (217)
192 1zak_A Adenylate kinase; ATP:A 96.6 0.00079 2.7E-08 66.9 2.9 32 256-287 4-35 (222)
193 4eun_A Thermoresistant glucoki 96.6 0.0015 5.2E-08 63.9 4.8 32 256-287 28-59 (200)
194 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.9E-08 62.3 4.4 30 258-287 9-38 (175)
195 1g5t_A COB(I)alamin adenosyltr 96.6 0.011 3.9E-07 58.4 11.0 101 259-369 30-163 (196)
196 1e4v_A Adenylate kinase; trans 96.4 0.0016 5.5E-08 64.4 3.9 30 259-288 2-31 (214)
197 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 64.6 4.0 29 260-288 3-31 (206)
198 2pbr_A DTMP kinase, thymidylat 96.4 0.0024 8.2E-08 61.2 4.9 31 259-289 2-35 (195)
199 2eyu_A Twitching motility prot 96.4 0.0015 5.2E-08 67.4 3.6 67 259-326 27-108 (261)
200 1s96_A Guanylate kinase, GMP k 96.4 0.0067 2.3E-07 60.9 7.9 26 257-282 16-41 (219)
201 1cke_A CK, MSSA, protein (cyti 96.4 0.0025 8.4E-08 63.1 4.6 31 258-288 6-36 (227)
202 2ewv_A Twitching motility prot 96.3 0.0035 1.2E-07 68.0 6.1 78 249-326 128-219 (372)
203 3crm_A TRNA delta(2)-isopenten 96.3 0.0022 7.4E-08 68.4 4.3 36 257-292 5-40 (323)
204 2px0_A Flagellar biosynthesis 96.3 0.014 4.9E-07 61.2 10.5 61 230-292 79-144 (296)
205 3uie_A Adenylyl-sulfate kinase 96.3 0.0027 9.4E-08 62.1 4.6 38 255-292 23-63 (200)
206 2v54_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 61.7 4.4 33 257-289 4-37 (204)
207 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.8E-08 62.9 3.4 30 259-289 3-32 (204)
208 2jaq_A Deoxyguanosine kinase; 96.3 0.0026 8.7E-08 61.5 4.0 29 259-287 2-30 (205)
209 1vt4_I APAF-1 related killer D 96.3 0.018 6.3E-07 69.9 12.1 43 227-280 131-173 (1221)
210 3bgw_A DNAB-like replicative h 96.2 0.011 3.9E-07 65.6 9.6 38 254-291 194-234 (444)
211 2xb4_A Adenylate kinase; ATP-b 96.2 0.0026 8.8E-08 63.6 4.0 30 259-288 2-31 (223)
212 2z0h_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 60.4 4.8 30 260-289 3-35 (197)
213 1nks_A Adenylate kinase; therm 96.2 0.0017 5.9E-08 62.1 2.6 34 259-292 3-39 (194)
214 3ake_A Cytidylate kinase; CMP 96.2 0.0033 1.1E-07 61.1 4.7 31 259-289 4-34 (208)
215 3kl4_A SRP54, signal recogniti 96.2 0.0073 2.5E-07 66.9 7.9 72 256-327 96-190 (433)
216 1q57_A DNA primase/helicase; d 96.2 0.011 3.8E-07 66.4 9.4 38 254-291 239-280 (503)
217 1m7g_A Adenylylsulfate kinase; 96.2 0.0067 2.3E-07 59.8 6.7 39 255-293 23-65 (211)
218 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0019 6.6E-08 69.7 2.7 29 259-287 26-54 (359)
219 1uf9_A TT1252 protein; P-loop, 96.1 0.0031 1.1E-07 61.0 3.8 31 257-288 8-38 (203)
220 2bbw_A Adenylate kinase 4, AK4 96.1 0.0043 1.5E-07 62.7 4.9 31 257-287 27-57 (246)
221 1jjv_A Dephospho-COA kinase; P 96.1 0.0029 9.9E-08 61.9 3.4 29 259-288 4-32 (206)
222 1tf7_A KAIC; homohexamer, hexa 96.1 0.029 9.9E-07 63.4 12.1 112 255-372 37-188 (525)
223 2wwf_A Thymidilate kinase, put 96.0 0.0021 7.3E-08 62.7 2.2 30 256-285 9-38 (212)
224 3r20_A Cytidylate kinase; stru 96.0 0.0047 1.6E-07 62.8 4.7 32 257-288 9-40 (233)
225 2grj_A Dephospho-COA kinase; T 96.0 0.0038 1.3E-07 61.5 3.8 31 259-289 14-44 (192)
226 1uj2_A Uridine-cytidine kinase 96.0 0.0054 1.8E-07 62.3 5.0 40 255-294 20-67 (252)
227 2plr_A DTMP kinase, probable t 96.0 0.0058 2E-07 59.4 5.0 28 257-284 4-31 (213)
228 1nn5_A Similar to deoxythymidy 96.0 0.0025 8.4E-08 62.4 2.2 28 256-283 8-35 (215)
229 3nwj_A ATSK2; P loop, shikimat 95.9 0.0042 1.4E-07 63.8 4.0 33 257-289 48-80 (250)
230 1w36_D RECD, exodeoxyribonucle 95.9 0.018 6.3E-07 66.3 9.6 24 258-281 165-188 (608)
231 2gxq_A Heat resistant RNA depe 95.9 0.031 1E-06 54.1 9.7 52 222-275 2-56 (207)
232 2h92_A Cytidylate kinase; ross 95.8 0.0053 1.8E-07 60.5 4.0 32 257-288 3-34 (219)
233 2qor_A Guanylate kinase; phosp 95.8 0.0069 2.4E-07 59.3 4.7 28 255-282 10-37 (204)
234 2yvu_A Probable adenylyl-sulfa 95.8 0.0076 2.6E-07 57.9 4.9 36 256-291 12-50 (186)
235 1vht_A Dephospho-COA kinase; s 95.8 0.0055 1.9E-07 60.5 3.9 31 257-288 4-34 (218)
236 1tf7_A KAIC; homohexamer, hexa 95.7 0.056 1.9E-06 61.1 12.5 108 255-369 279-417 (525)
237 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0034 1.2E-07 67.0 2.4 71 257-327 171-251 (330)
238 1ltq_A Polynucleotide kinase; 95.7 0.0042 1.4E-07 64.4 2.8 31 257-287 2-33 (301)
239 2axn_A 6-phosphofructo-2-kinas 95.7 0.019 6.5E-07 65.0 8.4 37 257-293 35-74 (520)
240 3b6e_A Interferon-induced heli 95.7 0.026 8.8E-07 54.7 8.2 24 258-281 49-72 (216)
241 3a8t_A Adenylate isopentenyltr 95.7 0.0051 1.7E-07 65.9 3.3 36 257-292 40-75 (339)
242 3c8u_A Fructokinase; YP_612366 95.6 0.0096 3.3E-07 58.6 5.1 26 257-282 22-47 (208)
243 1q3t_A Cytidylate kinase; nucl 95.6 0.0092 3.1E-07 59.9 5.0 33 256-288 15-47 (236)
244 1w4r_A Thymidine kinase; type 95.6 0.021 7.2E-07 56.4 7.5 68 259-328 22-103 (195)
245 3thx_B DNA mismatch repair pro 95.6 0.037 1.3E-06 66.7 11.0 108 256-372 672-799 (918)
246 3tau_A Guanylate kinase, GMP k 95.6 0.0084 2.9E-07 59.1 4.5 26 257-282 8-33 (208)
247 2qt1_A Nicotinamide riboside k 95.6 0.0052 1.8E-07 60.1 2.9 32 258-289 22-54 (207)
248 3foz_A TRNA delta(2)-isopenten 95.6 0.0076 2.6E-07 63.9 4.3 38 256-293 9-46 (316)
249 4a1f_A DNAB helicase, replicat 95.5 0.06 2.1E-06 57.6 11.1 39 253-291 42-83 (338)
250 2f6r_A COA synthase, bifunctio 95.5 0.007 2.4E-07 62.9 3.6 31 257-288 75-105 (281)
251 4e22_A Cytidylate kinase; P-lo 95.5 0.011 3.6E-07 60.4 4.9 30 258-287 28-57 (252)
252 3llm_A ATP-dependent RNA helic 95.5 0.075 2.6E-06 53.1 11.1 21 258-278 77-97 (235)
253 3zvl_A Bifunctional polynucleo 95.5 0.013 4.6E-07 64.3 6.0 34 254-287 255-288 (416)
254 1x6v_B Bifunctional 3'-phospho 95.4 0.021 7.1E-07 66.1 7.6 38 256-293 51-91 (630)
255 1kgd_A CASK, peripheral plasma 95.4 0.0095 3.2E-07 57.3 4.1 26 257-282 5-30 (180)
256 2j41_A Guanylate kinase; GMP, 95.4 0.0082 2.8E-07 58.2 3.7 26 256-281 5-30 (207)
257 2yhs_A FTSY, cell division pro 95.4 0.13 4.6E-06 57.7 13.9 27 255-281 291-317 (503)
258 1ex7_A Guanylate kinase; subst 95.4 0.01 3.4E-07 58.3 4.2 28 258-285 2-29 (186)
259 1hv8_A Putative ATP-dependent 95.4 0.12 4E-06 54.0 12.6 68 221-290 6-82 (367)
260 1rz3_A Hypothetical protein rb 95.3 0.028 9.4E-07 55.0 7.0 37 256-292 21-60 (201)
261 3thx_A DNA mismatch repair pro 95.2 0.07 2.4E-06 64.5 11.4 22 258-279 663-684 (934)
262 2xau_A PRE-mRNA-splicing facto 95.2 0.052 1.8E-06 64.4 10.1 23 258-280 110-132 (773)
263 2bdt_A BH3686; alpha-beta prot 95.2 0.013 4.5E-07 56.3 4.1 33 259-292 4-36 (189)
264 3asz_A Uridine kinase; cytidin 95.2 0.01 3.5E-07 58.1 3.4 32 257-288 6-39 (211)
265 1xx6_A Thymidine kinase; NESG, 95.2 0.02 6.7E-07 56.4 5.4 70 258-328 9-93 (191)
266 1zu4_A FTSY; GTPase, signal re 95.1 0.042 1.4E-06 58.3 8.4 39 254-292 102-143 (320)
267 3d3q_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 63.1 4.0 33 258-290 8-40 (340)
268 2v3c_C SRP54, signal recogniti 95.1 0.046 1.6E-06 60.5 8.8 36 256-291 98-136 (432)
269 1t6n_A Probable ATP-dependent 95.1 0.31 1.1E-05 47.5 14.0 60 220-281 13-75 (220)
270 2xxa_A Signal recognition part 95.1 0.075 2.6E-06 58.8 10.4 71 255-325 98-192 (433)
271 3rlf_A Maltose/maltodextrin im 95.0 0.016 5.5E-07 63.1 4.7 24 258-281 30-53 (381)
272 3fdi_A Uncharacterized protein 95.0 0.016 5.3E-07 57.3 4.1 29 259-287 8-36 (201)
273 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.7E-07 62.0 3.9 35 258-292 4-38 (322)
274 2qmh_A HPR kinase/phosphorylas 94.9 0.011 3.8E-07 58.8 2.9 33 257-290 34-66 (205)
275 3tr0_A Guanylate kinase, GMP k 94.9 0.017 5.9E-07 55.8 4.1 25 257-281 7-31 (205)
276 3fvq_A Fe(3+) IONS import ATP- 94.8 0.032 1.1E-06 60.2 6.4 23 259-281 32-54 (359)
277 3e70_C DPA, signal recognition 94.8 0.068 2.3E-06 56.9 8.8 27 255-281 127-153 (328)
278 4b3f_X DNA-binding protein smu 94.8 0.17 5.7E-06 58.6 12.8 57 221-291 183-242 (646)
279 1qde_A EIF4A, translation init 94.8 0.11 3.7E-06 51.0 9.7 58 220-279 13-74 (224)
280 1j8m_F SRP54, signal recogniti 94.7 0.093 3.2E-06 55.0 9.6 35 257-291 98-135 (297)
281 3a00_A Guanylate kinase, GMP k 94.7 0.018 6E-07 55.6 3.6 25 258-282 2-26 (186)
282 2j37_W Signal recognition part 94.7 0.081 2.8E-06 59.6 9.4 37 255-291 99-138 (504)
283 1p9r_A General secretion pathw 94.6 0.067 2.3E-06 58.9 8.4 93 220-326 143-246 (418)
284 3tui_C Methionine import ATP-b 94.6 0.033 1.1E-06 60.2 5.8 24 258-281 55-78 (366)
285 2pl3_A Probable ATP-dependent 94.5 0.13 4.5E-06 50.9 9.7 54 220-275 24-80 (236)
286 1odf_A YGR205W, hypothetical 3 94.5 0.018 6.1E-07 60.3 3.3 29 254-282 28-56 (290)
287 1ls1_A Signal recognition part 94.4 0.083 2.8E-06 55.3 8.3 35 256-290 97-134 (295)
288 3eph_A TRNA isopentenyltransfe 94.4 0.021 7.2E-07 62.6 3.8 34 257-290 2-35 (409)
289 3gmt_A Adenylate kinase; ssgci 94.3 0.02 6.9E-07 58.1 3.2 30 259-288 10-39 (230)
290 1lvg_A Guanylate kinase, GMP k 94.3 0.024 8.1E-07 55.5 3.6 26 257-282 4-29 (198)
291 2oap_1 GSPE-2, type II secreti 94.3 0.021 7.3E-07 64.5 3.7 70 257-326 260-343 (511)
292 1vec_A ATP-dependent RNA helic 94.3 0.21 7E-06 48.1 10.3 18 258-275 41-58 (206)
293 1wb9_A DNA mismatch repair pro 94.3 0.19 6.6E-06 59.7 11.9 24 257-280 607-630 (800)
294 3fe2_A Probable ATP-dependent 94.1 0.19 6.5E-06 50.2 10.0 55 219-275 27-84 (242)
295 3lnc_A Guanylate kinase, GMP k 94.1 0.022 7.6E-07 56.7 2.9 25 257-281 27-52 (231)
296 3ney_A 55 kDa erythrocyte memb 94.1 0.034 1.2E-06 55.0 4.2 27 256-282 18-44 (197)
297 3b9q_A Chloroplast SRP recepto 94.0 0.057 1.9E-06 56.8 6.0 28 254-281 97-124 (302)
298 1z6g_A Guanylate kinase; struc 94.0 0.031 1.1E-06 55.5 3.9 25 257-281 23-47 (218)
299 1nrj_B SR-beta, signal recogni 94.0 0.33 1.1E-05 47.0 11.2 25 257-281 12-36 (218)
300 3iuy_A Probable ATP-dependent 94.0 0.37 1.3E-05 47.3 11.7 56 218-275 16-75 (228)
301 3bor_A Human initiation factor 94.0 0.15 5E-06 50.9 8.7 56 219-276 28-86 (237)
302 1htw_A HI0065; nucleotide-bind 94.0 0.039 1.3E-06 52.5 4.2 25 257-281 33-57 (158)
303 1m8p_A Sulfate adenylyltransfe 93.9 0.093 3.2E-06 60.1 8.0 39 256-294 395-437 (573)
304 2ffh_A Protein (FFH); SRP54, s 93.9 0.24 8.2E-06 54.6 11.0 71 256-326 97-190 (425)
305 3p32_A Probable GTPase RV1496/ 93.9 0.27 9.1E-06 52.6 11.1 33 257-289 79-114 (355)
306 1bif_A 6-phosphofructo-2-kinas 93.9 0.11 3.7E-06 57.9 8.2 35 256-290 38-75 (469)
307 1c9k_A COBU, adenosylcobinamid 93.8 0.034 1.2E-06 54.3 3.6 32 260-292 2-33 (180)
308 3pey_A ATP-dependent RNA helic 93.8 0.52 1.8E-05 49.5 13.1 56 221-278 5-65 (395)
309 3hdt_A Putative kinase; struct 93.8 0.036 1.2E-06 55.8 3.8 29 259-287 16-44 (223)
310 1a7j_A Phosphoribulokinase; tr 93.8 0.033 1.1E-06 58.2 3.6 37 258-294 6-45 (290)
311 2jeo_A Uridine-cytidine kinase 93.7 0.038 1.3E-06 55.7 3.9 26 259-284 27-52 (245)
312 2v9p_A Replication protein E1; 93.7 0.044 1.5E-06 57.8 4.5 32 253-284 122-153 (305)
313 4eaq_A DTMP kinase, thymidylat 93.7 0.057 1.9E-06 54.3 5.1 32 257-288 26-59 (229)
314 1znw_A Guanylate kinase, GMP k 93.7 0.043 1.5E-06 53.8 4.0 26 257-282 20-45 (207)
315 1gtv_A TMK, thymidylate kinase 93.7 0.017 5.8E-07 56.3 1.1 24 259-282 2-25 (214)
316 1ewq_A DNA mismatch repair pro 93.6 0.19 6.5E-06 59.5 10.0 24 257-280 576-599 (765)
317 3ber_A Probable ATP-dependent 93.6 0.28 9.6E-06 49.4 10.1 54 220-275 42-98 (249)
318 2og2_A Putative signal recogni 93.5 0.077 2.6E-06 57.3 5.9 28 254-281 154-181 (359)
319 2j9r_A Thymidine kinase; TK1, 93.4 0.075 2.6E-06 53.3 5.2 30 260-289 31-63 (214)
320 2gza_A Type IV secretion syste 93.3 0.07 2.4E-06 57.4 5.2 72 255-326 173-262 (361)
321 1q0u_A Bstdead; DEAD protein, 93.2 0.21 7.2E-06 48.9 8.3 54 221-276 4-60 (219)
322 1xti_A Probable ATP-dependent 93.2 0.68 2.3E-05 48.8 12.8 58 221-280 8-68 (391)
323 2zj8_A DNA helicase, putative 93.1 0.2 7E-06 58.5 9.3 52 222-275 2-57 (720)
324 2j0s_A ATP-dependent RNA helic 93.1 0.38 1.3E-05 51.4 10.8 58 219-278 35-95 (410)
325 1s2m_A Putative ATP-dependent 93.1 0.36 1.2E-05 51.3 10.4 57 220-278 20-79 (400)
326 2o8b_B DNA mismatch repair pro 93.0 0.26 9E-06 60.1 10.3 22 257-278 789-810 (1022)
327 1sq5_A Pantothenate kinase; P- 93.0 0.057 1.9E-06 56.7 3.9 26 257-282 80-105 (308)
328 3qf4_B Uncharacterized ABC tra 92.9 0.37 1.3E-05 55.3 10.9 27 255-281 379-405 (598)
329 2va8_A SSO2462, SKI2-type heli 92.8 0.2 7E-06 58.3 8.7 56 220-277 7-66 (715)
330 2ged_A SR-beta, signal recogni 92.8 0.1 3.4E-06 49.6 5.1 47 229-281 26-72 (193)
331 3oiy_A Reverse gyrase helicase 92.8 0.14 4.8E-06 55.2 6.7 21 258-278 37-57 (414)
332 2i3b_A HCR-ntpase, human cance 92.7 0.061 2.1E-06 52.6 3.5 23 259-281 3-25 (189)
333 3tqf_A HPR(Ser) kinase; transf 92.7 0.074 2.5E-06 51.7 3.9 28 257-285 16-43 (181)
334 2orv_A Thymidine kinase; TP4A 92.7 0.26 8.9E-06 49.9 8.0 67 259-328 21-102 (234)
335 2ocp_A DGK, deoxyguanosine kin 92.7 0.067 2.3E-06 53.6 3.7 26 257-282 2-27 (241)
336 3kta_A Chromosome segregation 92.7 0.057 1.9E-06 51.3 3.1 24 259-282 28-51 (182)
337 2qm8_A GTPase/ATPase; G protei 92.7 0.31 1.1E-05 51.8 9.2 24 258-281 56-79 (337)
338 3tqc_A Pantothenate kinase; bi 92.6 0.12 4.2E-06 54.8 5.8 28 255-282 90-117 (321)
339 1wp9_A ATP-dependent RNA helic 92.5 0.61 2.1E-05 50.0 11.4 33 259-291 25-61 (494)
340 3cr8_A Sulfate adenylyltranfer 92.5 0.14 4.7E-06 58.4 6.4 38 257-294 369-410 (552)
341 3vkw_A Replicase large subunit 92.4 0.17 5.7E-06 56.1 6.8 23 258-280 162-184 (446)
342 1p5z_B DCK, deoxycytidine kina 92.4 0.034 1.2E-06 56.6 1.1 30 256-285 23-53 (263)
343 2fwr_A DNA repair protein RAD2 92.4 0.2 6.8E-06 55.1 7.4 33 259-291 110-142 (472)
344 1np6_A Molybdopterin-guanine d 92.4 0.089 3E-06 50.8 4.0 25 257-281 6-30 (174)
345 1sky_E F1-ATPase, F1-ATP synth 92.4 0.073 2.5E-06 59.4 3.8 23 259-281 153-175 (473)
346 3aez_A Pantothenate kinase; tr 92.3 0.082 2.8E-06 55.8 4.0 27 256-282 89-115 (312)
347 2p6r_A Afuhel308 helicase; pro 92.3 0.091 3.1E-06 61.3 4.8 34 257-290 40-76 (702)
348 4a82_A Cystic fibrosis transme 92.1 0.33 1.1E-05 55.5 9.0 26 256-281 366-391 (578)
349 4i1u_A Dephospho-COA kinase; s 92.0 0.091 3.1E-06 52.5 3.8 30 259-289 11-40 (210)
350 3tbk_A RIG-I helicase domain; 92.0 1.2 4.3E-05 49.0 13.4 34 258-291 20-61 (555)
351 1rj9_A FTSY, signal recognitio 92.0 0.11 3.6E-06 54.8 4.4 26 256-281 101-126 (304)
352 2gks_A Bifunctional SAT/APS ki 91.9 0.26 8.7E-06 56.1 7.8 38 257-294 372-412 (546)
353 3eiq_A Eukaryotic initiation f 91.9 0.36 1.2E-05 51.4 8.5 55 221-277 40-97 (414)
354 1fuu_A Yeast initiation factor 91.8 0.52 1.8E-05 49.7 9.5 55 219-275 19-76 (394)
355 1xjc_A MOBB protein homolog; s 91.7 0.11 3.9E-06 50.0 3.9 32 258-289 5-39 (169)
356 4edh_A DTMP kinase, thymidylat 91.7 0.15 5.1E-06 50.8 4.9 31 258-288 7-40 (213)
357 2gj8_A MNME, tRNA modification 91.7 0.18 6.3E-06 47.4 5.4 22 259-280 6-27 (172)
358 2p67_A LAO/AO transport system 91.6 0.39 1.3E-05 51.0 8.4 25 257-281 56-80 (341)
359 3b85_A Phosphate starvation-in 91.6 0.085 2.9E-06 52.4 2.9 22 259-280 24-45 (208)
360 2cbz_A Multidrug resistance-as 91.4 0.074 2.5E-06 53.8 2.3 26 256-281 30-55 (237)
361 3tif_A Uncharacterized ABC tra 91.4 0.074 2.5E-06 53.7 2.3 26 257-282 31-56 (235)
362 3dz8_A RAS-related protein RAB 91.4 0.85 2.9E-05 43.1 9.8 23 259-281 25-47 (191)
363 3lxw_A GTPase IMAP family memb 91.3 0.37 1.2E-05 48.7 7.5 23 258-280 22-44 (247)
364 4f4c_A Multidrug resistance pr 91.3 0.19 6.5E-06 63.1 6.3 28 255-282 442-469 (1321)
365 3fmo_B ATP-dependent RNA helic 91.3 0.96 3.3E-05 46.9 10.8 54 219-274 90-148 (300)
366 1g8f_A Sulfate adenylyltransfe 91.2 0.14 4.7E-06 57.8 4.5 27 257-283 395-421 (511)
367 3ice_A Transcription terminati 91.2 0.56 1.9E-05 51.2 9.0 24 258-281 175-198 (422)
368 3ozx_A RNAse L inhibitor; ATP 91.1 0.25 8.6E-06 56.1 6.6 103 260-372 297-449 (538)
369 4a2p_A RIG-I, retinoic acid in 91.1 1.4 4.9E-05 48.7 12.7 34 258-291 23-64 (556)
370 3q72_A GTP-binding protein RAD 91.1 0.13 4.6E-06 47.1 3.6 21 259-279 4-24 (166)
371 3def_A T7I23.11 protein; chlor 91.1 0.47 1.6E-05 48.1 8.0 25 257-281 36-60 (262)
372 2pcj_A ABC transporter, lipopr 91.1 0.067 2.3E-06 53.6 1.6 25 257-281 30-54 (224)
373 3qf4_A ABC transporter, ATP-bi 91.1 0.15 5.3E-06 58.4 4.8 26 256-281 368-393 (587)
374 3v9p_A DTMP kinase, thymidylat 91.0 0.19 6.5E-06 50.7 4.9 31 258-288 26-63 (227)
375 3lxx_A GTPase IMAP family memb 91.0 0.35 1.2E-05 48.1 6.8 24 258-281 30-53 (239)
376 2onk_A Molybdate/tungstate ABC 91.0 0.095 3.3E-06 53.2 2.6 27 254-281 22-48 (240)
377 2f9l_A RAB11B, member RAS onco 90.9 0.13 4.3E-06 49.6 3.3 23 259-281 7-29 (199)
378 3ly5_A ATP-dependent RNA helic 90.8 0.81 2.8E-05 46.4 9.5 19 258-276 92-110 (262)
379 1oix_A RAS-related protein RAB 90.7 0.12 4.2E-06 49.5 3.1 23 259-281 31-53 (191)
380 1b0u_A Histidine permease; ABC 90.7 0.093 3.2E-06 53.9 2.3 25 258-282 33-57 (262)
381 2wsm_A Hydrogenase expression/ 90.7 0.21 7.2E-06 48.6 4.8 25 258-282 31-55 (221)
382 3tmk_A Thymidylate kinase; pho 90.5 0.26 8.8E-06 49.3 5.3 29 257-285 5-33 (216)
383 1mv5_A LMRA, multidrug resista 90.5 0.089 3E-06 53.3 1.9 24 258-281 29-52 (243)
384 2gk6_A Regulator of nonsense t 90.4 0.13 4.4E-06 59.4 3.5 32 259-290 197-232 (624)
385 2zu0_C Probable ATP-dependent 90.4 0.12 4E-06 53.3 2.8 24 257-280 46-69 (267)
386 1g6h_A High-affinity branched- 90.4 0.093 3.2E-06 53.7 2.0 25 258-282 34-58 (257)
387 2d2e_A SUFC protein; ABC-ATPas 90.4 0.11 3.7E-06 53.0 2.4 24 257-280 29-52 (250)
388 2ghi_A Transport protein; mult 90.4 0.1 3.5E-06 53.5 2.3 26 256-281 45-70 (260)
389 2dyk_A GTP-binding protein; GT 90.4 0.15 5.3E-06 46.3 3.3 22 259-280 3-24 (161)
390 3sqw_A ATP-dependent RNA helic 90.3 0.74 2.5E-05 52.2 9.6 18 257-274 60-77 (579)
391 2ixe_A Antigen peptide transpo 90.3 0.1 3.6E-06 53.8 2.3 27 256-282 44-70 (271)
392 3k53_A Ferrous iron transport 90.3 0.18 6.2E-06 51.4 4.1 23 258-280 4-26 (271)
393 3lv8_A DTMP kinase, thymidylat 90.3 0.17 5.9E-06 51.2 3.8 25 257-281 27-51 (236)
394 2olj_A Amino acid ABC transpor 90.2 0.11 3.6E-06 53.6 2.3 25 257-281 50-74 (263)
395 1svi_A GTP-binding protein YSX 90.2 0.13 4.4E-06 48.8 2.7 25 256-280 22-46 (195)
396 1z2a_A RAS-related protein RAB 90.2 0.15 5E-06 46.8 3.0 22 259-280 7-28 (168)
397 1oyw_A RECQ helicase, ATP-depe 90.2 0.57 1.9E-05 52.7 8.4 31 258-288 41-71 (523)
398 2pze_A Cystic fibrosis transme 90.2 0.098 3.3E-06 52.6 1.9 25 257-281 34-58 (229)
399 1sgw_A Putative ABC transporte 90.2 0.094 3.2E-06 52.3 1.7 24 258-281 36-59 (214)
400 2v6i_A RNA helicase; membrane, 90.1 0.81 2.8E-05 50.1 9.4 21 258-278 3-24 (431)
401 1lw7_A Transcriptional regulat 90.1 0.14 4.7E-06 54.9 3.1 28 257-284 170-197 (365)
402 2ff7_A Alpha-hemolysin translo 90.1 0.1 3.4E-06 53.2 1.9 25 257-281 35-59 (247)
403 3sop_A Neuronal-specific septi 90.1 0.16 5.4E-06 52.5 3.4 23 259-281 4-26 (270)
404 1ji0_A ABC transporter; ATP bi 90.1 0.1 3.5E-06 52.8 1.9 24 258-281 33-56 (240)
405 3gfo_A Cobalt import ATP-bindi 89.9 0.1 3.6E-06 54.1 1.9 24 258-281 35-58 (275)
406 3fmp_B ATP-dependent RNA helic 89.9 1 3.5E-05 49.4 10.1 53 220-274 91-148 (479)
407 2yz2_A Putative ABC transporte 89.9 0.12 4E-06 53.2 2.3 25 257-281 33-57 (266)
408 1kao_A RAP2A; GTP-binding prot 89.9 0.18 6.1E-06 45.9 3.3 23 259-281 5-27 (167)
409 1vpl_A ABC transporter, ATP-bi 89.9 0.12 4.1E-06 53.0 2.3 25 257-281 41-65 (256)
410 2f1r_A Molybdopterin-guanine d 89.8 0.11 3.7E-06 50.1 1.7 25 258-282 3-27 (171)
411 2qi9_C Vitamin B12 import ATP- 89.8 0.11 3.8E-06 53.0 1.9 26 257-282 26-51 (249)
412 3ld9_A DTMP kinase, thymidylat 89.7 0.2 7E-06 50.3 3.8 28 256-283 20-47 (223)
413 3fht_A ATP-dependent RNA helic 89.7 0.83 2.8E-05 48.4 8.9 53 220-274 24-81 (412)
414 2ce2_X GTPase HRAS; signaling 89.7 0.18 6E-06 45.8 3.1 23 259-281 5-27 (166)
415 2i4i_A ATP-dependent RNA helic 89.7 1.2 4E-05 47.5 10.0 52 220-273 14-68 (417)
416 3dkp_A Probable ATP-dependent 89.6 1.2 4.1E-05 44.1 9.4 17 258-274 67-83 (245)
417 1u8z_A RAS-related protein RAL 89.6 0.2 6.7E-06 45.7 3.3 24 258-281 5-28 (168)
418 4g1u_C Hemin import ATP-bindin 89.5 0.11 3.8E-06 53.5 1.7 25 257-281 37-61 (266)
419 1ek0_A Protein (GTP-binding pr 89.5 0.2 6.9E-06 45.8 3.3 23 259-281 5-27 (170)
420 2yyz_A Sugar ABC transporter, 89.4 0.16 5.3E-06 54.9 2.8 24 258-281 30-53 (359)
421 2ihy_A ABC transporter, ATP-bi 89.4 0.12 4.1E-06 53.6 1.9 25 258-282 48-72 (279)
422 2it1_A 362AA long hypothetical 89.3 0.16 5.4E-06 54.9 2.8 24 258-281 30-53 (362)
423 1z0j_A RAB-22, RAS-related pro 89.3 0.21 7.1E-06 45.8 3.3 23 259-281 8-30 (170)
424 2nq2_C Hypothetical ABC transp 89.3 0.12 4.2E-06 52.8 1.8 26 257-282 31-56 (253)
425 2wji_A Ferrous iron transport 89.3 0.2 6.8E-06 46.6 3.1 22 259-280 5-26 (165)
426 1v43_A Sugar-binding transport 89.2 0.16 5.6E-06 55.0 2.8 24 258-281 38-61 (372)
427 4f4c_A Multidrug resistance pr 89.2 0.23 7.8E-06 62.3 4.5 24 258-281 1106-1129(1321)
428 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.21 7.3E-06 46.2 3.3 22 259-280 9-30 (177)
429 1z47_A CYSA, putative ABC-tran 89.2 0.15 5.1E-06 54.9 2.4 24 258-281 42-65 (355)
430 1g16_A RAS-related protein SEC 89.1 0.21 7.1E-06 45.8 3.1 22 259-280 5-26 (170)
431 1z08_A RAS-related protein RAB 89.1 0.22 7.5E-06 45.7 3.3 22 259-280 8-29 (170)
432 2nzj_A GTP-binding protein REM 89.1 0.21 7.2E-06 46.1 3.1 22 259-280 6-27 (175)
433 1ky3_A GTP-binding protein YPT 89.0 0.22 7.6E-06 46.2 3.3 24 258-281 9-32 (182)
434 2zej_A Dardarin, leucine-rich 89.0 0.18 6E-06 47.8 2.6 21 259-279 4-24 (184)
435 4ag6_A VIRB4 ATPase, type IV s 88.9 0.41 1.4E-05 51.6 5.7 25 256-280 34-58 (392)
436 1r2q_A RAS-related protein RAB 88.9 0.23 8E-06 45.3 3.3 22 259-280 8-29 (170)
437 3iby_A Ferrous iron transport 88.9 0.37 1.3E-05 49.1 5.1 22 259-280 3-24 (256)
438 1c1y_A RAS-related protein RAP 88.8 0.24 8.2E-06 45.2 3.3 22 259-280 5-26 (167)
439 3bc1_A RAS-related protein RAB 88.7 0.24 8.2E-06 46.4 3.3 23 258-280 12-34 (195)
440 2erx_A GTP-binding protein DI- 88.7 0.21 7E-06 45.8 2.8 22 259-280 5-26 (172)
441 1g29_1 MALK, maltose transport 88.7 0.17 5.7E-06 54.9 2.4 24 258-281 30-53 (372)
442 2hf9_A Probable hydrogenase ni 88.7 0.53 1.8E-05 45.9 5.9 24 258-281 39-62 (226)
443 2wjg_A FEOB, ferrous iron tran 88.7 0.21 7E-06 47.0 2.8 22 259-280 9-30 (188)
444 2lkc_A Translation initiation 88.6 0.26 9.1E-06 45.6 3.5 23 257-279 8-30 (178)
445 2atv_A RERG, RAS-like estrogen 88.6 0.26 8.9E-06 47.0 3.5 24 257-280 28-51 (196)
446 2xtp_A GTPase IMAP family memb 88.5 1.2 4.1E-05 44.6 8.6 25 257-281 22-46 (260)
447 1r8s_A ADP-ribosylation factor 88.5 0.27 9.3E-06 44.9 3.5 23 259-281 2-24 (164)
448 3d31_A Sulfate/molybdate ABC t 88.5 0.14 4.7E-06 55.0 1.6 24 258-281 27-50 (348)
449 3q85_A GTP-binding protein REM 88.5 0.24 8.3E-06 45.5 3.1 21 259-279 4-24 (169)
450 2p5s_A RAS and EF-hand domain 88.5 0.26 8.8E-06 47.2 3.4 24 257-280 28-51 (199)
451 2vp4_A Deoxynucleoside kinase; 88.5 0.24 8.1E-06 49.3 3.2 27 258-285 21-47 (230)
452 2pjz_A Hypothetical protein ST 88.4 0.17 5.7E-06 52.1 2.1 25 257-281 30-54 (263)
453 1gm5_A RECG; helicase, replica 88.4 1.4 4.9E-05 52.1 10.4 37 255-291 387-426 (780)
454 2wjy_A Regulator of nonsense t 88.4 0.22 7.7E-06 59.2 3.5 23 259-281 373-395 (800)
455 2y8e_A RAB-protein 6, GH09086P 88.3 0.25 8.5E-06 45.7 3.1 22 259-280 16-37 (179)
456 1z0f_A RAB14, member RAS oncog 88.3 0.27 9.2E-06 45.5 3.3 24 258-281 16-39 (179)
457 3clv_A RAB5 protein, putative; 88.3 0.26 9E-06 46.3 3.3 23 258-280 8-30 (208)
458 1yrb_A ATP(GTP)binding protein 88.3 0.48 1.7E-05 47.4 5.4 33 257-289 14-48 (262)
459 4tmk_A Protein (thymidylate ki 88.3 0.29 9.8E-06 48.7 3.7 24 258-281 4-27 (213)
460 1upt_A ARL1, ADP-ribosylation 88.2 0.3 1E-05 44.8 3.6 23 258-280 8-30 (171)
461 4dsu_A GTPase KRAS, isoform 2B 88.2 0.27 9.3E-06 45.9 3.3 23 259-281 6-28 (189)
462 2hxs_A RAB-26, RAS-related pro 88.2 0.24 8.3E-06 45.9 2.9 22 259-280 8-29 (178)
463 2bbs_A Cystic fibrosis transme 88.0 0.18 6.1E-06 52.7 2.1 24 258-281 65-88 (290)
464 2a9k_A RAS-related protein RAL 88.0 0.28 9.7E-06 45.6 3.3 23 259-281 20-42 (187)
465 2fn4_A P23, RAS-related protei 88.0 0.26 9E-06 45.6 3.1 22 259-280 11-32 (181)
466 3gd7_A Fusion complex of cysti 88.0 0.2 7E-06 54.5 2.6 26 256-281 46-71 (390)
467 2f7s_A C25KG, RAS-related prot 88.0 1.5 5.2E-05 42.1 8.7 22 259-280 27-48 (217)
468 3a1s_A Iron(II) transport prot 88.0 0.42 1.4E-05 48.7 4.8 22 259-280 7-28 (258)
469 3con_A GTPase NRAS; structural 88.0 0.29 9.8E-06 46.2 3.3 23 259-281 23-45 (190)
470 2oil_A CATX-8, RAS-related pro 88.0 0.29 9.8E-06 46.4 3.3 23 259-281 27-49 (193)
471 2efe_B Small GTP-binding prote 87.9 0.29 9.9E-06 45.5 3.3 22 259-280 14-35 (181)
472 1nij_A Hypothetical protein YJ 87.9 0.38 1.3E-05 50.6 4.5 23 259-281 6-28 (318)
473 1m7b_A RND3/RHOE small GTP-bin 87.8 0.28 9.5E-06 46.3 3.1 23 258-280 8-30 (184)
474 3fho_A ATP-dependent RNA helic 87.8 1.9 6.6E-05 48.0 10.5 20 257-276 158-177 (508)
475 2npi_A Protein CLP1; CLP1-PCF1 87.7 0.27 9.4E-06 54.7 3.4 28 254-281 135-162 (460)
476 4hlc_A DTMP kinase, thymidylat 87.7 0.47 1.6E-05 46.8 4.8 30 259-288 4-35 (205)
477 3tw8_B RAS-related protein RAB 87.7 0.27 9.4E-06 45.5 2.9 21 259-279 11-31 (181)
478 2bme_A RAB4A, RAS-related prot 87.6 0.29 9.8E-06 45.8 3.1 24 258-281 11-34 (186)
479 3t1o_A Gliding protein MGLA; G 87.6 0.31 1.1E-05 45.9 3.3 23 259-281 16-38 (198)
480 2e87_A Hypothetical protein PH 87.6 2.4 8.2E-05 45.0 10.7 24 257-280 167-190 (357)
481 1oxx_K GLCV, glucose, ABC tran 87.5 0.14 4.8E-06 55.0 1.0 24 258-281 32-55 (353)
482 2qtf_A Protein HFLX, GTP-bindi 87.5 0.82 2.8E-05 49.2 7.0 22 259-280 181-202 (364)
483 1ko7_A HPR kinase/phosphatase; 87.5 0.33 1.1E-05 51.4 3.7 28 257-285 144-171 (314)
484 2b6h_A ADP-ribosylation factor 87.5 0.35 1.2E-05 46.2 3.6 25 255-279 27-51 (192)
485 1moz_A ARL1, ADP-ribosylation 87.4 0.29 1E-05 45.6 3.0 25 255-279 16-40 (183)
486 2g6b_A RAS-related protein RAB 87.4 0.33 1.1E-05 45.1 3.3 24 258-281 11-34 (180)
487 1f2t_A RAD50 ABC-ATPase; DNA d 87.4 0.31 1.1E-05 45.5 3.1 23 259-281 25-47 (149)
488 1dek_A Deoxynucleoside monopho 87.4 0.22 7.6E-06 50.7 2.2 27 259-285 3-29 (241)
489 1knx_A Probable HPR(Ser) kinas 87.4 0.31 1E-05 51.6 3.4 29 257-286 147-175 (312)
490 3kkq_A RAS-related protein M-R 87.3 0.33 1.1E-05 45.4 3.3 22 259-280 20-41 (183)
491 3ch4_B Pmkase, phosphomevalona 87.3 0.29 1E-05 48.5 3.0 38 255-292 9-47 (202)
492 1mh1_A RAC1; GTP-binding, GTPa 87.3 0.33 1.1E-05 45.2 3.3 22 259-280 7-28 (186)
493 3hjn_A DTMP kinase, thymidylat 87.2 0.54 1.8E-05 46.0 4.9 30 260-289 3-35 (197)
494 1pui_A ENGB, probable GTP-bind 87.2 0.2 6.8E-06 48.2 1.7 24 257-280 26-49 (210)
495 2eyq_A TRCF, transcription-rep 87.2 3.8 0.00013 50.7 13.4 53 229-290 605-660 (1151)
496 2gf9_A RAS-related protein RAB 87.1 0.34 1.2E-05 45.8 3.3 23 259-281 24-46 (189)
497 3i5x_A ATP-dependent RNA helic 87.1 3.6 0.00012 46.0 12.3 17 257-273 111-127 (563)
498 2db3_A ATP-dependent RNA helic 87.1 1.4 4.8E-05 48.0 8.6 52 220-273 55-109 (434)
499 4ddu_A Reverse gyrase; topoiso 87.0 1.3 4.4E-05 54.6 9.1 21 258-278 94-114 (1104)
500 3tkl_A RAS-related protein RAB 86.9 0.36 1.2E-05 45.6 3.3 24 258-281 17-40 (196)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.8e-85 Score=734.13 Aligned_cols=435 Identities=50% Similarity=0.852 Sum_probs=385.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++++|+||+|++++|++|++++.+++++..|..+|...|+|+||+||||||||++|+++|++++.||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
+|.+..+++.+|..++...||||||||+|.++.+++. +......+++++|+.+|+++....+++||++||+++.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 9999999999999999999999999999999887753 2344567889999999999988889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++||||||+.|.|++|+.++|.+|++.++++.....++|+..++..++|++|+||.++|++|++.|.+++...|+.+||
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999998877788999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCC-CccceEEecCCCccccccHHHHHH
Q 005066 455 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRG-MSLGMVAQLPDKDETSISRKQMLA 533 (715)
Q Consensus 455 ~~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg-~~lG~~~~~p~~~~~~~tr~~l~~ 533 (715)
..|++++++|.++++..+++++++.++|||+|||++++++++..+++++||+||| +++|||+++|++|.+++||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 9999999999988888899999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCC----------CCCCCHHHHHH
Q 005066 534 RLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN----------GKSMSTETRLL 603 (715)
Q Consensus 534 ~i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~----------~~~~s~~~~~~ 603 (715)
+|+|||||||||+++||+ +||||++||++||+||+.||++||||+++|++.|....+ .+.+|+++...
T Consensus 330 ~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 407 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASK 407 (476)
T ss_dssp HHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHH
T ss_pred HHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHH
Confidence 999999999999999995 899999999999999999999999999999998864321 25789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 005066 604 IEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQ 654 (715)
Q Consensus 604 id~ev~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~ 654 (715)
||+||+++|+++|++|++||++|++.|++||++||++|||+++||++|+..
T Consensus 408 ~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 408 IDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999964
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-81 Score=710.45 Aligned_cols=434 Identities=50% Similarity=0.821 Sum_probs=409.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
++++|+||+|++++|.++++++.+++++..|..++...|+|+||+||||||||+||+++|++++.+|+.++++++.+.++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccc
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~a 375 (715)
+.....++.+|+.++...|||+||||||.++.++.. ....+..+++++|+.+|+++.....+++|++||+|+.||++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 999999999999998888999999999999876653 23456778899999999999888899999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
++||||||++|.|++||.++|.+||+.|+++.....++++..++..++|++|+||.++|++|+..|.+++...|+++||.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999887777889999999999999999999999999999998888899999999
Q ss_pred HHHHHHhccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCC-CccccccHHHHHHH
Q 005066 456 YAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPD-KDETSISRKQMLAR 534 (715)
Q Consensus 456 ~A~~~i~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~-~~~~~~tr~~l~~~ 534 (715)
.|++++.++.++++..+++++++.++|||+|||++++++++.++|+|+||+|||+++||++ |. ++.+++||.+|+++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchhhhhccCHHHHHHH
Confidence 9999999999888888999999999999999999999999999999999999999999998 77 78899999999999
Q ss_pred HHHHhcHHHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCCC-------CCCCCHHHHHHHHHH
Q 005066 535 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-------GKSMSTETRLLIEKE 607 (715)
Q Consensus 535 i~v~LgGraAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~~-------~~~~s~~~~~~id~e 607 (715)
|+++||||+||+++||+ +||||++||++||+||+.||++||||+++|++.|....+ .+.+|+++...||+|
T Consensus 344 i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHH
Confidence 99999999999999994 899999999999999999999999999999998864321 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhh
Q 005066 608 VRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 608 v~~ll~~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~ 656 (715)
|+++|+++|++|++||++|++.|++||++||++|||+++||++|+....
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~ 470 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999997643
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-54 Score=469.58 Aligned_cols=248 Identities=38% Similarity=0.634 Sum_probs=237.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.|+++|+||+|++++|++|++.|.+ +++|+.|..+|..+|+|+|||||||||||++|+|+|++++.+|+.++++++.++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|++++.++.+|..|+..+||||||||||+++++|... ......+++++||.+||++....+|+||+|||+|+.||
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 999999999999999999999999999999999887543 34567889999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
|||+||||||++|+||+||.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.++++..|+++|
T Consensus 302 pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~D 381 (405)
T 4b4t_J 302 PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381 (405)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHH
T ss_pred HhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 005066 454 LEYAKDKIMMGS 465 (715)
Q Consensus 454 l~~A~~~i~~g~ 465 (715)
|..|+++++...
T Consensus 382 f~~Al~~v~~~~ 393 (405)
T 4b4t_J 382 FELAVGKVMNKN 393 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc
Confidence 999999987643
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-53 Score=474.67 Aligned_cols=352 Identities=34% Similarity=0.567 Sum_probs=278.3
Q ss_pred cHHHHHHHHHHHHHhcccchHHHHHHHhhhcccccch-hhhccccccccccCCcc---------ccCccCCCCCCeEEEe
Q 005066 98 NQSALSEYVKALVKVDRLDDSELLKTLQKGIANSARD-EESIGGISAFKNVGKPT---------KDGVLGTASAPIHMVA 167 (715)
Q Consensus 98 ~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~ 167 (715)
...++.+|.++|.++.+++. .++.++....+..+. ......+.+++++|..+ ...|+.+..+|.|+|.
T Consensus 53 ~~~~~~~~~~~l~~~~~~e~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~ 130 (437)
T 4b4t_L 53 HNKALNQFKRKLLEHRRYDD--QLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVG 130 (437)
T ss_dssp --------------CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEe
Confidence 44567889998888777654 345554444333222 23334466777766543 2467888889999987
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCccccCCCC-------CCCCCCccCCCcHHHHHHHHHHH
Q 005066 168 AEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPSL-------ESNTKFSDVKGVDEAKQELEEIV 240 (715)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~dv~G~d~~k~eL~eiv 240 (715)
+.+......+-.+.+ .............++.+++|.+ .++++|+||+|++++|++|++.|
T Consensus 131 ~~~~~~~~~l~~g~~-------------v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v 197 (437)
T 4b4t_L 131 VRNSVDRSKLKKGVR-------------VTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVI 197 (437)
T ss_dssp BCSSSCTTSCCTTCE-------------EEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHH
T ss_pred cccccCHhhcCCCce-------------eeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHH
Confidence 766543333222111 1111110000001223333322 47899999999999999999999
Q ss_pred HH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeE
Q 005066 241 HY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 241 ~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~I 319 (715)
.+ +++|+.|..+|..+|+|||||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+..+|||
T Consensus 198 ~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 198 ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCce
Confidence 98 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHH
Q 005066 320 IFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 396 (715)
Q Consensus 320 LfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR 396 (715)
|||||||+++.+|... .......++++||.+||++...++|+||+|||+|+.|||||+||||||++|+||+||.++|
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 9999999999887543 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005066 397 RQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 397 ~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g 464 (715)
.+||+.|+++.....++|+..||..|.||||+||.++|++|++.|.++++..|+++||..|++++...
T Consensus 358 ~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999888999999999999999999999999999999999999999999999999998754
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-53 Score=463.09 Aligned_cols=300 Identities=35% Similarity=0.555 Sum_probs=261.1
Q ss_pred cCccCCCCCCeEEEeccCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCccccCC-------CCCCCCCCcc
Q 005066 153 DGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQP-------SLESNTKFSD 225 (715)
Q Consensus 153 ~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~d 225 (715)
..|+.++.+|.|+|.+.+......+..+. .+.+......-.-.++.+.+| ...++++|+|
T Consensus 117 ~~iv~~~~~~~~~v~~~~~~~~~~l~~~~-------------~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~D 183 (437)
T 4b4t_I 117 HAIVTSPTMPDYYVSILSFVDKELLEPGC-------------SVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSD 183 (437)
T ss_dssp EEEEECSSSCCCEEECCTTSCGGGCCTTC-------------EEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGG
T ss_pred EEEEEcCCCCEEEEecccccCHhHccCCc-------------EEEEeccCccceeecCCccCCcceeeeeccCCCCccee
Confidence 47888999999999887764444333221 111111110000011222222 2257899999
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH
Q 005066 226 VKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 304 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~ 304 (715)
|+|++++|++|++.+.+ +++|+.|..+|..+|+|||||||||||||++|+|+|++++.+|+.++++++.++|+|++++.
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ 263 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGR 381 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgR 381 (715)
++.+|..|+..+||||||||||+++.+|... ......+++++||.+||++...++|+||+|||+|+.|||||+||||
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 343 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGR 343 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTT
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCc
Confidence 9999999999999999999999999988543 3446788999999999999999999999999999999999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 382 FDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 382 Fd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
||++|+|++||.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.++++..|+++||..|++++
T Consensus 344 fD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 344 IDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999998
Q ss_pred hccc
Q 005066 462 MMGS 465 (715)
Q Consensus 462 ~~g~ 465 (715)
..+.
T Consensus 424 ~~~~ 427 (437)
T 4b4t_I 424 MKNK 427 (437)
T ss_dssp HHHH
T ss_pred hCCC
Confidence 7654
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-52 Score=459.58 Aligned_cols=304 Identities=36% Similarity=0.566 Sum_probs=264.7
Q ss_pred cCccCCCCCCeEEEeccCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCccccCCCC-------CCCCCCcc
Q 005066 153 DGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPSL-------ESNTKFSD 225 (715)
Q Consensus 153 ~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~d 225 (715)
..|+..+++|.|||.+........+-.+.+. .+......--..++.+++|.+ .|+++|+|
T Consensus 144 ~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v-------------~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~D 210 (467)
T 4b4t_H 144 KYVINLKQIAKFVVGLGERVSPTDIEEGMRV-------------GVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSD 210 (467)
T ss_dssp CCEEEETTSCCBCCCCCTTCCSSSCCTTCEE-------------CSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSS
T ss_pred cEEEEecCCCeEEEecCCcCCHHHCCCCCEE-------------EEccCcceeeecCCCccCCccceeeecCCCCCCHHH
Confidence 4678889999999887665444444333221 011111111112334444432 47899999
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH
Q 005066 226 VKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 304 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~ 304 (715)
|+|++++|++|++.|.+ +++|+.|..+|..+|+|||||||||||||++|+++|++++.+|+.++++++.++|+|++++.
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ 290 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 290 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGR 381 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgR 381 (715)
++.+|..|+..+||||||||+|.++.+|... .......+++++|.+||++....+|+||+|||+|+.||++|+||||
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 370 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc
Confidence 9999999999999999999999999888543 3456778899999999999999999999999999999999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 382 FDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 382 Fd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
||++|+|++||.++|.+||+.|+++.....++|+..||+.|.||||+||.++|++|++.|.++++..|+++||..|++++
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hccccccc
Q 005066 462 MMGSERKS 469 (715)
Q Consensus 462 ~~g~~~~~ 469 (715)
+.|.++.+
T Consensus 451 ~~g~~k~s 458 (467)
T 4b4t_H 451 ISGYKKFS 458 (467)
T ss_dssp HHHHCC--
T ss_pred hcCcccch
Confidence 99876643
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-50 Score=449.90 Aligned_cols=247 Identities=38% Similarity=0.633 Sum_probs=235.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++.+|+.++++++..+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 5789999999999999999998877 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|.+++.++.+|..|+..+||||||||+|+++++|.... ......++++||.+||++...++|+||+|||+|+.||
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 9999999999999999999999999999999999886543 3467788999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
|||+||||||++|+||+||.++|.+||+.|+++.....++|+..||..|.||||+||.++|++|++.|.++++..|+++|
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~D 414 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 005066 454 LEYAKDKIMMG 464 (715)
Q Consensus 454 l~~A~~~i~~g 464 (715)
|..|++++.+.
T Consensus 415 f~~Al~~v~~~ 425 (434)
T 4b4t_M 415 FVEGISEVQAR 425 (434)
T ss_dssp HHHHHHSCSSS
T ss_pred HHHHHHHHhCC
Confidence 99999987654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-49 Score=441.55 Aligned_cols=246 Identities=39% Similarity=0.603 Sum_probs=234.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|++|++.+.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++++|+.++++++.++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 4789999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|.++..++.+|..|+..+||||||||+|+++.+|.. .......+++++||++||++....+|+||+|||+|+.||
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 99999999999999999999999999999999988743 234567889999999999999999999999999999999
Q ss_pred ccccCCCCcccccccC-CCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005066 374 KALVRPGRFDRHIVVP-NPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 452 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~-~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 452 (715)
|+|+||||||++|+|| +|+.++|..||+.|+++.....++|+..||..|.||||+||.++|++|++.|.++++..|+++
T Consensus 326 ~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~ 405 (428)
T 4b4t_K 326 PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405 (428)
T ss_dssp HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
Confidence 9999999999999997 899999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005066 453 DLEYAKDKIMM 463 (715)
Q Consensus 453 dl~~A~~~i~~ 463 (715)
||..|+.+++.
T Consensus 406 d~~~A~~~~~~ 416 (428)
T 4b4t_K 406 DLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhhC
Confidence 99999988754
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=4.7e-50 Score=410.52 Aligned_cols=195 Identities=34% Similarity=0.548 Sum_probs=160.7
Q ss_pred hccccccccccchhhhhhhhHHHhhhHHHHhhhCCCCcceeEEEeeCCCccceEEecCCCccccccHHHHHHHHHHHhcH
Q 005066 462 MMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGG 541 (715)
Q Consensus 462 ~~g~~~~~~~~s~~~~~~~A~hEaGhAlva~~~~~~~~v~kvti~prg~~lG~~~~~p~~~~~~~tr~~l~~~i~v~LgG 541 (715)
++|+++++..+++++|+++||||||||||++++++++||+||||+|||+++|||+++|++|.+++||.+|+++|+|+|||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgG 80 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGG 80 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhH
Confidence 36888998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccCCchHHHHHHHHHHHHHHHHhCCCCcccceecccCC--------CCCCCCHHHHHHHHHHHHHHHH
Q 005066 542 RVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDD--------NGKSMSTETRLLIEKEVRNFLD 613 (715)
Q Consensus 542 raAEel~fG~~~vtsGas~DL~~AT~lA~~mV~~~Gms~~~G~~~~~~~~--------~~~~~s~~~~~~id~ev~~ll~ 613 (715)
||||+++||.+++||||++||++||+||+.||++||||+++|+++|...+ ..+++|+++...||.||+++|+
T Consensus 81 RaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~ 160 (238)
T 2di4_A 81 RAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIIT 160 (238)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 99999999755799999999999999999999999999999999886322 2367999999999999999999
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHhcCCCHHHHHHHHHhhh
Q 005066 614 RAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 656 (715)
Q Consensus 614 ~a~~ra~~iL~~~r~~L~~lA~~Lle~etL~~~ei~~il~~~~ 656 (715)
+||++|++||++|++.|++||++||++|||+++||.+|+....
T Consensus 161 ~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 161 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999998753
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.8e-44 Score=422.77 Aligned_cols=246 Identities=36% Similarity=0.649 Sum_probs=192.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 3689999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|++++.++.+|..|+..+||||||||||+++++|... ......+++++||.+||++....+|+||+|||+|+.||
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 999999999999999999999999999999999888542 34456789999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--------
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-------- 445 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-------- 445 (715)
++++||||||++|+||+||.++|.+||+.|+++.....++|+..||+.|+||||+||.++|++|++.|.++.
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~ 710 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC------
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999888889999999999999999999999999999998752
Q ss_pred -----------------CCccCHHHHHHHHHHHhc
Q 005066 446 -----------------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 -----------------~~~It~edl~~A~~~i~~ 463 (715)
...|+++||..|+.++.+
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 711 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp -----------------CCC----CCTTTC-----
T ss_pred hhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 124777777777776543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-42 Score=408.96 Aligned_cols=248 Identities=42% Similarity=0.640 Sum_probs=233.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|++|++++.+ |++|+.|..+|.++|+|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4679999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
|+|+++..++.+|..|+.++||||||||||.|++++.....+...+++++|+.+|+++....+|+||++||+++.||++|
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 99999999999999999999999999999999998877766667889999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-----------
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG----------- 445 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~----------- 445 (715)
+||||||++|+|+.||.++|.+||+.|+++.....++|+..||..|.||+|+||.++|++|++.|.++.
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999988899999999999999999999999999999987652
Q ss_pred ------CCccCHHHHHHHHHHHhccc
Q 005066 446 ------AKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 446 ------~~~It~edl~~A~~~i~~g~ 465 (715)
...|+++||..|+..+.+..
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred chhhhccceeeHHHHHHHHHhCCCcc
Confidence 13578899999998876644
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.5e-38 Score=325.69 Aligned_cols=248 Identities=66% Similarity=1.035 Sum_probs=225.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++.+|+||+|+++++++|++++.++.+++.|..++...|+|+||+||||||||++|++++++++.||+.++++++.+.+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
.+.+...++.+|..+....|+++||||+|.++..+... ........+++++..++++....+++||++||.++.+|+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 89889999999999998899999999999998766432 234456788999999999888889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++|++||++.+.+++|+.++|.+|++.++++.....++++..++..++||+++||.++|++|...|.+++...|+.+||
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~ 245 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 245 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 99999999999999999999999999999988877778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 005066 455 EYAKDKIMMGS 465 (715)
Q Consensus 455 ~~A~~~i~~g~ 465 (715)
..|++++..|.
T Consensus 246 ~~a~~~~~~~~ 256 (257)
T 1lv7_A 246 EKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhcCC
Confidence 99999998775
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=334.84 Aligned_cols=246 Identities=37% Similarity=0.619 Sum_probs=208.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHH-HhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVH-YLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~-~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|++|++.+. .+.+++.|..++...|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 367899999999999999998655 4999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
+.+.....++.+|..++...||++|+||+|.++..+.........+.+++++.+|++......++++++||+|+.||+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88988999999999998889999999999998765543222233467889999999998888999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhh---hccCCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHc-------
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSK---VLKADDVDLMIIARGTP--GFSGADLANLVNIAALKAAMD------- 444 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~---~~~~~dvdl~~la~~t~--G~sgadI~~lv~~A~~~A~~~------- 444 (715)
+||||||+.|+|++|+.++|.+||+.++++ .....++|+..++..+. ||||+||.++|++|++.|.++
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999864 34567899999998754 999999999999999998864
Q ss_pred ----CCCccCHHHHHHHHHHHhc
Q 005066 445 ----GAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 445 ----~~~~It~edl~~A~~~i~~ 463 (715)
+...|+++||+.|+.++.+
T Consensus 244 ~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 244 GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ------CCBCHHHHHHHHTTCCC
T ss_pred cccccCCeecHHHHHHHHHHhcC
Confidence 2347999999999988755
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=322.72 Aligned_cols=255 Identities=48% Similarity=0.820 Sum_probs=205.5
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
++++|+||+|++++|+.|++++.++.+++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc----hHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD----QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~----~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
+.+...++.+|..+....|+||||||+|.+..++.... .......++.++..++++....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999998999999999999987654321 23445678899999998877889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD--LMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 452 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd--l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 452 (715)
+++|+|||++.++|++|+.++|.+||+.++++.....+.+ ...++..+.|++++||.++|+.|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999998765544433 46799999999999999999999999999888999999
Q ss_pred HHHHHHHHHhccccccccccc
Q 005066 453 DLEYAKDKIMMGSERKSAVIS 473 (715)
Q Consensus 453 dl~~A~~~i~~g~~~~~~~~s 473 (715)
||..|+.++..+..++...++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999988777665544
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.7e-37 Score=329.40 Aligned_cols=245 Identities=36% Similarity=0.654 Sum_probs=219.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++++.|++.+.+ +.+|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
+.|.....++.+|..++...||||||||+|.+...+... ......+++++|+..|+++....+++||++||+++.||
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 999999999999999999999999999999997544221 11223456788999999988888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--------
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-------- 445 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-------- 445 (715)
++++|||||++.|+|++|+.++|.+||+.++++.....++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~ 248 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999988777778999999999999999999999999999886532
Q ss_pred -----------------CCccCHHHHHHHHHHHh
Q 005066 446 -----------------AKAVTMADLEYAKDKIM 462 (715)
Q Consensus 446 -----------------~~~It~edl~~A~~~i~ 462 (715)
...|+.+||..|+.++-
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 249 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp -----------------CCCBCHHHHHHHHTTCC
T ss_pred hhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13588999999987653
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.9e-36 Score=315.05 Aligned_cols=247 Identities=44% Similarity=0.716 Sum_probs=230.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++++.|++.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 4678999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
+.|.....++.+|..++...|+||||||+|.+..++... ........+..++..++++....+++||+|||.++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 999999999999999999999999999999998776543 24456778899999999888888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 453 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 453 (715)
++++|++||++.+.++.|+.++|.+||+.++++.....++++..++..+.|++++||.++|+.|...|.+++...|+.+|
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d 250 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHH
Confidence 99999999999999999999999999999998887778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 005066 454 LEYAKDKIMMG 464 (715)
Q Consensus 454 l~~A~~~i~~g 464 (715)
|..|+.++...
T Consensus 251 ~~~al~~~~~~ 261 (285)
T 3h4m_A 251 FRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988653
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=323.32 Aligned_cols=224 Identities=38% Similarity=0.654 Sum_probs=204.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeeccchhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEE 295 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~s~~~~ 295 (715)
.++++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+|+|+||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 3678999999999999999999887 888888764 35678999999999999999999999999 89999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEeecCCCCcccc
Q 005066 296 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~-~~~~ViVIaaTN~p~~LD~ 374 (715)
.+.|.....++.+|..++...|+||||||||.+..++.........+.+++|+..++++. ...+++||++||+|+.||+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 999999999999999999999999999999999988877666677888999999999986 3678999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
+++| ||++.+++++|+.++|.+||+.++++.... .+.++..|++.+.||+|+||.++|++|++.|.++
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999876443 5678999999999999999999999999988764
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.2e-36 Score=321.46 Aligned_cols=243 Identities=35% Similarity=0.580 Sum_probs=214.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 4678999999999999999998877 788877765 66778999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEeecCCCCccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~-~~~~ViVIaaTN~p~~LD~a 375 (715)
+.|.....++.+|..++...|+||||||||.+..++..........++++++..++++. ...+++||++||.++.||++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999887765555556778899999999885 56789999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC--------
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA-------- 446 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~-------- 446 (715)
++| ||+..+++++|+.++|.+||+.++.+.... .+.++..|+..+.||+|+||.++|++|...|.++..
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999999876433 567889999999999999999999999988877521
Q ss_pred -----------------------------------CccCHHHHHHHHHHHhc
Q 005066 447 -----------------------------------KAVTMADLEYAKDKIMM 463 (715)
Q Consensus 447 -----------------------------------~~It~edl~~A~~~i~~ 463 (715)
..|+++||..|+..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 300 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCC
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCC
Confidence 34999999999997644
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4e-35 Score=302.25 Aligned_cols=241 Identities=59% Similarity=0.963 Sum_probs=218.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++++|+||+|.++++.++++++..+.++..+..++...|+|++|+||||||||+|++++++.++.+++.+++.++...+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 46789999999999999999999999899999999999999999999999999999999999999999999999988877
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 374 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~ 374 (715)
.+.....++.+|+.+....|+++||||+|.++..+.. .........+++++.+|++......++++++||.|+.||+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 8888888999999998788999999999999876543 1234566788999999999888888999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
+++|++||++.|+++.|+.++|.+||+.++++.....++++..++..+.|++|+||.++|++|+..|.+++...|+.+||
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl 249 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 249 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999988777788899999999999999999999999999999988889999999
Q ss_pred HHHH
Q 005066 455 EYAK 458 (715)
Q Consensus 455 ~~A~ 458 (715)
++|+
T Consensus 250 ~~a~ 253 (254)
T 1ixz_A 250 EEAA 253 (254)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.6e-35 Score=319.01 Aligned_cols=243 Identities=35% Similarity=0.583 Sum_probs=209.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++++.|++.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 4578999999999999999998877 788888876 67788999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEeecCCCCccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~-~~~ViVIaaTN~p~~LD~a 375 (715)
+.|.....++.+|..++...|+||||||+|.+...+..........++++|+..|+++.. ..+++||++||+++.||++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999998877655556677888999999998754 5789999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC---------
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG--------- 445 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~--------- 445 (715)
++| ||+..+++++|+.++|.+||+.++.+... ..+.++..|+..+.||+|+||.++|++|++.|.++.
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 99999999999999999999999987643 356789999999999999999999999999988751
Q ss_pred ----------------------------------CCccCHHHHHHHHHHHhc
Q 005066 446 ----------------------------------AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 ----------------------------------~~~It~edl~~A~~~i~~ 463 (715)
...|+++||..|+.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~p 333 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 333 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCC
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCC
Confidence 135999999999998754
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.9e-35 Score=329.38 Aligned_cols=245 Identities=42% Similarity=0.651 Sum_probs=228.4
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.+++|++|+|.+++++.|++.+.. +++++.|..+|...|+++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 377 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl 377 (715)
.|.....++.+|..+....||||||||||.+..++..........+++.|+..|+++....+++||++||+++.||++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 99999999999999999999999999999999888766666677889999999999888889999999999999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC----------
Q 005066 378 RPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK---------- 447 (715)
Q Consensus 378 RpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~---------- 447 (715)
|+|||++.|+|++|+.++|.+||+.+++......++++..++..+.||+++||.++|++|+..|.++...
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999888888899999999999999999999999999999887543
Q ss_pred -------ccCHHHHHHHHHHHhc
Q 005066 448 -------AVTMADLEYAKDKIMM 463 (715)
Q Consensus 448 -------~It~edl~~A~~~i~~ 463 (715)
.|+++||..|+..+.+
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSHHH
T ss_pred hhhcccCcCCHHHHHHHHHhCCc
Confidence 4788999998876654
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=8.2e-34 Score=297.04 Aligned_cols=240 Identities=59% Similarity=0.967 Sum_probs=218.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
++++|+||+|.++++.++++++..+.++..+..++...|+|++|+||||||||+|++++++.++.+++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999888778
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccc
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~a 375 (715)
+.....+..+|+.+....|+++||||+|.++..+.. .........+++++.+|++......++++++||.|+.||++
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 878888999999998888999999999999866532 12345677889999999998887889999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
++|++||++.|+|++|+.++|.+||+.++++.....++++..++..++|++++||.++|++|+..|.+++...|+.+||+
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~ 274 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 274 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHH
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 99999999999999999999999999999887777788999999999999999999999999999999888899999999
Q ss_pred HHH
Q 005066 456 YAK 458 (715)
Q Consensus 456 ~A~ 458 (715)
+|+
T Consensus 275 ~a~ 277 (278)
T 1iy2_A 275 EAA 277 (278)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.7e-36 Score=314.44 Aligned_cols=249 Identities=56% Similarity=0.876 Sum_probs=218.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
.++++|+||+|.+++++.|++++.++..++.|..++...|+++||+||||||||++|+++|++++.||+.++++++...+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc----hHHHHHHHHHHHHHhhcccc-CCCEEEEeecCCCCcc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD----QQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESL 372 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~----~~~~~~~l~~LL~~Ld~~~~-~~~ViVIaaTN~p~~L 372 (715)
.|.+...++.+|..+....|+||||||+|.+..++.... .......++.|+..++++.. ..+++||++||.++.|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 888888888999999988999999999999987653211 11122356778888887654 3459999999999999
Q ss_pred cccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005066 373 DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 452 (715)
Q Consensus 373 D~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 452 (715)
|++++|++||+..++|++|+.++|.+||+.++++.....++++..++..+.|++|+||.++|+.|...|..++...|+.+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~ 244 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHH
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHH
Confidence 99999999999999999999999999999999887767788888999999999999999999999999988888899999
Q ss_pred HHHHHHHHHhcccc
Q 005066 453 DLEYAKDKIMMGSE 466 (715)
Q Consensus 453 dl~~A~~~i~~g~~ 466 (715)
||..|+.++.+...
T Consensus 245 ~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 245 HLKEAVERGIAGLE 258 (268)
T ss_dssp HHHTSCTTCCCCCC
T ss_pred HHHHHHHHHhhcch
Confidence 99998877655443
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=6e-34 Score=318.36 Aligned_cols=224 Identities=38% Similarity=0.649 Sum_probs=194.0
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeeccchhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEE 295 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~s~~~~ 295 (715)
.++++|+||+|++++++.|++.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4678999999999999999998876 788887763 35678999999999999999999999999 89999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEeecCCCCcccc
Q 005066 296 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDK 374 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~-~~~ViVIaaTN~p~~LD~ 374 (715)
.|+|.....++.+|..++...|+||||||||.+.+.+.........+++++||..|+++.. ..+++||++||+|+.||+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~ 286 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCH
Confidence 9999999999999999999999999999999998887766666677889999999998763 678999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
+++| ||++.+++++|+.++|..||+.++.+... ..+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 287 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999987643 35678999999999999999999999999988764
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-32 Score=292.28 Aligned_cols=242 Identities=35% Similarity=0.590 Sum_probs=209.5
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
++++|+||+|++++++.|++.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.++++++...+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 568999999999999999999887 78888776654 6789999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEeecCCCCccccc
Q 005066 298 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDKA 375 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~--~~~ViVIaaTN~p~~LD~a 375 (715)
.|.....++.+|..++...|+||||||||.+...+...........+++|+..+++... ..+++||++||.++.||++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 99999999999999999999999999999998877655556677888999999998653 4689999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC---------
Q 005066 376 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG--------- 445 (715)
Q Consensus 376 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~--------- 445 (715)
++| ||+..+++++|+.++|.+|++.+++.... ..+.++..|+..+.||+++||.++|+.|...+.++.
T Consensus 238 l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~ 315 (357)
T 3d8b_A 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315 (357)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 999 99999999999999999999999876532 235568889999999999999999999998888742
Q ss_pred ---CCccCHHHHHHHHHHHhc
Q 005066 446 ---AKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 446 ---~~~It~edl~~A~~~i~~ 463 (715)
...|+.+||..|+.++.+
T Consensus 316 ~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 316 PDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp ---CCCBCHHHHHHHHHHHGG
T ss_pred ccccCCcCHHHHHHHHHhcCC
Confidence 357999999999998865
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=3.3e-32 Score=286.26 Aligned_cols=241 Identities=37% Similarity=0.596 Sum_probs=205.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|.+++++.|++.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3678999999999999999998876 77787776654 467899999999999999999999999999999999999988
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC---CCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN---EGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~---~~ViVIaaTN~p~~LD 373 (715)
+.+.+...++.+|..+....|+||||||+|.+...+............+.|+..++++... .+++||++||.++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 8898899999999999999999999999999988765544334456678888888887543 5799999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-------
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------- 445 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------- 445 (715)
++++| ||+..+++++|+.++|..|++.++++... ..+.++..++..+.|++++||.++|+.|...+.++.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99998 99999999999999999999999977543 234567889999999999999999999999998764
Q ss_pred -----CCccCHHHHHHHHHHH
Q 005066 446 -----AKAVTMADLEYAKDKI 461 (715)
Q Consensus 446 -----~~~It~edl~~A~~~i 461 (715)
...|+.+||..|+.++
T Consensus 252 ~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 252 LDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --CCCCCCCCHHHHHHHTTSC
T ss_pred ccccccCCcCHHHHHHHHHHc
Confidence 2579999999998754
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=4.5e-31 Score=289.58 Aligned_cols=242 Identities=36% Similarity=0.594 Sum_probs=199.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++++.|.+++.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++...
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 4678999999999999999998876 66777776665 457899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEeecCCCCcccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDK 374 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~--~~~ViVIaaTN~p~~LD~ 374 (715)
|.|.....++.+|..++...|+||||||||.++..+...........++.|+..++++.. ..+++||++||.++.||+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 999999999999999999999999999999998777655555567788899999998765 467999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc---------
Q 005066 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD--------- 444 (715)
Q Consensus 375 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~--------- 444 (715)
+++| ||+..|+|+.|+.++|.+||+.++..... ..+.++..|+..+.|+++++|..||+.|...+.++
T Consensus 268 ~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~ 345 (389)
T 3vfd_A 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNM 345 (389)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CC
T ss_pred HHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999 99999999999999999999999876432 23456788999999999999999999999998876
Q ss_pred ---CCCccCHHHHHHHHHHHh
Q 005066 445 ---GAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 445 ---~~~~It~edl~~A~~~i~ 462 (715)
....|+.+||..++.++.
T Consensus 346 ~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 346 SASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp SSSCCCCCCHHHHHHHHHHCC
T ss_pred chhhcCCcCHHHHHHHHHHcC
Confidence 345799999999988753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=6.4e-34 Score=339.24 Aligned_cols=228 Identities=38% Similarity=0.704 Sum_probs=204.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+|++|++++|+.|.+.+.+ ++.++.|..++..+++++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 3678999999999999999999887 788888989999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 373 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD 373 (715)
|+|.....++.+|..++...||||||||||.++..+... ......+++++||.+|+++....+++||+|||+++.||
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 999999999999999999999999999999998877543 23456788999999999998889999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 374 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 374 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
++++|||||++.|+|++|+.++|.+||+.++++.....++++..++..+.|||++||.++|++|...|.++.
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877788999999999999999999999999999998764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.2e-30 Score=276.26 Aligned_cols=226 Identities=21% Similarity=0.275 Sum_probs=161.1
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHH----HhCCCeEEEEcCchh
Q 005066 252 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDA 327 (715)
Q Consensus 252 lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 327 (715)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.++|.....++.+|..+ +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred hcCCCCCCch--HHHHHHHHHHHHHhhcc-----------ccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHH
Q 005066 328 IGGSRNPKDQ--QYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVE 394 (715)
Q Consensus 328 l~~~r~~~~~--~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~ 394 (715)
+++++..... .....+.+.|+..||+. ....+++||+|||+++.||++++|||||++.|+ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9875432211 12334557777777633 245689999999999999999999999998887 47999
Q ss_pred HHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHH-------HHHHHHHH-HcCCCccCHHHHHHHHHHHhcccc
Q 005066 395 GRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLV-------NIAALKAA-MDGAKAVTMADLEYAKDKIMMGSE 466 (715)
Q Consensus 395 eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv-------~~A~~~A~-~~~~~~It~edl~~A~~~i~~g~~ 466 (715)
+|.+|++.++.. .+++...++..+.||++++|..+. ..+..... ..+.+.+ -..++.+..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~--------~~~~~~~~~ 256 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKI--------GDKLLNSFD 256 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTC--------HHHHTSCSS
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HHHHHcCCC
Confidence 999999988764 367788899999999999986431 11111100 1111111 112222222
Q ss_pred ccccccchhhhhhhhHHHhhhHHHHh
Q 005066 467 RKSAVISDESRKLTAFHEGGHALVAV 492 (715)
Q Consensus 467 ~~~~~~s~~~~~~~A~hEaGhAlva~ 492 (715)
....+.+.+....++||+||+++..
T Consensus 257 -~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 257 -GPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp -CSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCccccHHHHHHHHHHHHHH
Confidence 2234556678889999999999863
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2.3e-28 Score=291.46 Aligned_cols=246 Identities=42% Similarity=0.642 Sum_probs=224.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 296 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~ 296 (715)
.++++|+||+|++++++.|++++.. +.+|+.|..++...++++||+||||||||+||+++|++++.+|+.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4578999999999999999999988 999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 297 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 297 ~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
+.+.....++.+|..+....|+++||||||.+..++.........+++.+|+..++++....++++|++||+++.+|+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHH
Confidence 99999999999999999999999999999999988766555666778899999999998889999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC----------
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA---------- 446 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~---------- 446 (715)
.|++||++.+.++.|+.++|.+||+.++.+.....++++..++..+.|++++++..++++|+..+.++..
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~ 437 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHC
T ss_pred hcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhcc
Confidence 9999999999999999999999999999988888888999999999999999999999999988876532
Q ss_pred -------CccCHHHHHHHHHHHhc
Q 005066 447 -------KAVTMADLEYAKDKIMM 463 (715)
Q Consensus 447 -------~~It~edl~~A~~~i~~ 463 (715)
..++.+|+..++.....
T Consensus 438 ~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 438 DAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred chhhhhhhhhhhhhhhccccccCc
Confidence 24667788888776544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.9e-26 Score=258.43 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=146.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccchhh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEE 295 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~~~ 295 (715)
.+...|++|+|++++++.+.++++.++. +..+|+++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999998876543 455778999999999999999999999999 9999999999999
Q ss_pred hHhhhhHHHHHHHHHHH---HhCCCeEEEEcCchhhcCCCCCCchHHH----H---------------HHHHHHHHHhh-
Q 005066 296 MFVGVGARRVRDLFSAA---KKRSPCIIFIDEIDAIGGSRNPKDQQYM----K---------------MTLNQLLVELD- 352 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~----~---------------~~l~~LL~~Ld- 352 (715)
.++|..+. ++.+|..+ +...||||||||+|.++.++........ . +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 7888999999999999987754321110 0 11233555554
Q ss_pred -ccccCCCEEEEeecCCCCcccccccCCCCccc--ccccCCCC--HHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCH
Q 005066 353 -GFKQNEGIIVIAATNFPESLDKALVRPGRFDR--HIVVPNPD--VEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSG 427 (715)
Q Consensus 353 -~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~--~I~v~~Pd--~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sg 427 (715)
++...+.++|+++||+++.+|+++.||||||+ .+.+|.|+ .++|.+|++.+.. .|+..++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33444557777999999999999999999999 56777774 5778888776553 268889999999 9
Q ss_pred HHHHHHHHH
Q 005066 428 ADLANLVNI 436 (715)
Q Consensus 428 adI~~lv~~ 436 (715)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999964
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=1.6e-22 Score=213.10 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=168.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCC---CCeEEEEcCCCCChHHHHHHHHHHh-------CCCeEEeeccchh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKL---PKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEFE 294 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~---pkgvLL~GPPGTGKT~LAralA~el-------~~~fi~is~s~~~ 294 (715)
+|+|++++|+.|.+++..+..+..+...|... +.++||+||||||||++|+++|+.+ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999999999866667777766544 4469999999999999999999988 3499999999999
Q ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC----
Q 005066 295 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE---- 370 (715)
Q Consensus 295 ~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~---- 370 (715)
..+.|.....+..+|..+ .++||||||+|.+...+.... .....++.|+..++. ...+++||++||.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMEN--NRDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHH
Confidence 888888888889999887 467999999999986553221 224456777777774 346788999998654
Q ss_pred -cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-cHHHHHhc-------CCCCCHHHHHHHHHHHHHHH
Q 005066 371 -SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARG-------TPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 371 -~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-dl~~la~~-------t~G~sgadI~~lv~~A~~~A 441 (715)
.++|+|++ ||+.+|.|++|+.+++.+|++.++.+....-+. .+..++.. ....+++++.++++.|...+
T Consensus 185 ~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 185 FQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 25789988 999999999999999999999999865332111 23344443 33345899999999998766
Q ss_pred HHc----CCCccCHHHHH
Q 005066 442 AMD----GAKAVTMADLE 455 (715)
Q Consensus 442 ~~~----~~~~It~edl~ 455 (715)
..+ ....++.+|+.
T Consensus 263 ~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 263 ANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHC---CEEHHHHH
T ss_pred HHHHHhccCCCCCHHHHh
Confidence 543 34556666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=4.3e-22 Score=214.88 Aligned_cols=251 Identities=19% Similarity=0.250 Sum_probs=167.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccchhhh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEM 296 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~~~~~ 296 (715)
+..+|++++|++++++.+..+...+.. +..+++++||+||||||||++|+++++.++ .||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 455699999999999998888776554 334468999999999999999999999997 48988887663322
Q ss_pred H-------------------------------------------------hhhhHHHHHHHHHHHHh---------CCCe
Q 005066 297 F-------------------------------------------------VGVGARRVRDLFSAAKK---------RSPC 318 (715)
Q Consensus 297 ~-------------------------------------------------vg~~~~~vr~lF~~A~~---------~~P~ 318 (715)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11223455555555432 1278
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec-----------CCCCcccccccCCCCcccccc
Q 005066 319 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT-----------NFPESLDKALVRPGRFDRHIV 387 (715)
Q Consensus 319 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT-----------N~p~~LD~aLlRpgRFd~~I~ 387 (715)
||||||+|.+. ...++.|+..++.. ...++++++. |.+..++++|++ ||.. +.
T Consensus 192 vl~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~ 255 (368)
T 3uk6_A 192 VLFIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VS 255 (368)
T ss_dssp EEEEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred eEEEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EE
Confidence 99999999883 23456666666542 2245544443 357789999998 9975 89
Q ss_pred cCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccc
Q 005066 388 VPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSE 466 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~~ 466 (715)
|++|+.+++.+|++.++...... .+-.+..++..+.+.+++++.++|+.|...|..++...|+.+|++.++..++.. .
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~-~ 334 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE-S 334 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCH-H
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCH-H
Confidence 99999999999999998764322 223366788888756899999999999999999999999999999999864432 1
Q ss_pred ccccccchhhhhhhhHHHhhhHHHHhhh
Q 005066 467 RKSAVISDESRKLTAFHEGGHALVAVHT 494 (715)
Q Consensus 467 ~~~~~~s~~~~~~~A~hEaGhAlva~~~ 494 (715)
+....+.+.+++ .-++|+++--...-+
T Consensus 335 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 361 (368)
T 3uk6_A 335 RSTQYMKEYQDA-FLFNELKGETMDTSL 361 (368)
T ss_dssp HHHHHHC---------------------
T ss_pred HHHHHHHHhhhh-hhhhcCCccccccch
Confidence 112223333333 347777766554433
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=1.6e-20 Score=200.72 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=165.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|++++|.+++++.+.+.+...+. ....+.++||+||||||||++|+++++.++.+|+.+++..+..
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 455899999999999999988875432 2345678999999999999999999999999999999977642
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 362 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViV 362 (715)
...+...+.. ...+++|||||||.+. ....+.|+..++... ..+++++
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 2233333332 3467899999999884 223445555554332 1125899
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|++||....++++|++ ||+..+.|++|+.+++..|++.++...... .+..+..++..+. -+++++.++++.+...+
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999999999998765332 2223556777555 47899999999998888
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 005066 442 AMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 442 ~~~~~~~It~edl~~A~~~i 461 (715)
...+...|+.+++..++...
T Consensus 235 ~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHTTCSEECHHHHHHHHHHH
T ss_pred HhhcCCccCHHHHHHHHHHh
Confidence 88888899999999988764
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=3.8e-20 Score=194.05 Aligned_cols=236 Identities=23% Similarity=0.301 Sum_probs=162.7
Q ss_pred ccCCCcHHHHHHHHHHHHH-hcCchhHhhh-CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hHhhh
Q 005066 224 SDVKGVDEAKQELEEIVHY-LRDPKRFTRL-GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVGV 300 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~-L~~~~~~~~l-g~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~vg~ 300 (715)
++|+|++++++.+...+.. +..+.....+ ....|.++||+||||||||++|+++++.++.+++.++++.+.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999877754 2222111111 2345779999999999999999999999999999999998876 45553
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEcCchhhcCCCCCCchH-HHHHHHHHHHHHhhccc--------cCCCEEEEee
Q 005066 301 G-ARRVRDLFSAA-----KKRSPCIIFIDEIDAIGGSRNPKDQQ-YMKMTLNQLLVELDGFK--------QNEGIIVIAA 365 (715)
Q Consensus 301 ~-~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~-~~~~~l~~LL~~Ld~~~--------~~~~ViVIaa 365 (715)
. ...++.+|..+ ....++||||||+|.+.......... ....+.+.|+..+++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 11236899999999998665433222 23334667777777532 3457888888
Q ss_pred ----cCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh----h-------hhcc---CCcccHHHHHhcC-----
Q 005066 366 ----TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM----S-------KVLK---ADDVDLMIIARGT----- 422 (715)
Q Consensus 366 ----TN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l----~-------~~~~---~~dvdl~~la~~t----- 422 (715)
++.+..++++|++ ||+..|.|++|+.+++.+|++.++ . .... -.+-.+..|+..+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 5577889999997 999889999999999999998422 1 1111 1122244555554
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHc-----CCC-ccCHHHHHHHHHHH
Q 005066 423 --PGFSGADLANLVNIAALKAAMD-----GAK-AVTMADLEYAKDKI 461 (715)
Q Consensus 423 --~G~sgadI~~lv~~A~~~A~~~-----~~~-~It~edl~~A~~~i 461 (715)
.+.+.+++.++++.+...+..+ +.. .|+.+|++.++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 2467899999999876554322 211 49999999887643
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=1.5e-19 Score=191.31 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=161.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHh
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 298 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~v 298 (715)
.+.+|++++|.+++++.+.+.+..... ....+.++||+||||||||++|+++++.++.+|+.++++.+...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-- 77 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 77 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh--
Confidence 455899999999999999888775321 12456789999999999999999999999999999998876431
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005066 299 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 362 (715)
Q Consensus 299 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViV 362 (715)
..+...|..+ ...+++|||||+|.+. . .....|+..++... ...++++
T Consensus 78 ----~~l~~~l~~~-~~~~~~l~lDEi~~l~--------~---~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 78 ----GDLAAILANS-LEEGDILFIDEIHRLS--------R---QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----HHHHHHHTTT-CCTTCEEEETTTTSCC--------H---HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----HHHHHHHHHh-ccCCCEEEEECCcccc--------c---chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1222222221 2467899999999874 1 12333444444321 1236889
Q ss_pred EeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 363 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 363 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
|++||.+..++++|.+ ||+.++.+++|+.+++.++++.++...... .+..+..++..+.| +++++.++++.+...+
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 9999999999999987 998899999999999999999998754332 22235667888755 6899999999887777
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 005066 442 AMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 442 ~~~~~~~It~edl~~A~~~i 461 (715)
...+...|+.+++..++...
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh
Confidence 66677789999998887654
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.6e-20 Score=208.74 Aligned_cols=170 Identities=24% Similarity=0.275 Sum_probs=81.9
Q ss_pred ccCCCcHHHHHHHHHHHHH-hcCchhHhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh-hHhhh
Q 005066 224 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVGV 300 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~-L~~~~~~~~lg~~-~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~-~~vg~ 300 (715)
++|+|++++|+.|...+.. ++.+..+..+... .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 4444444444333 5789999999999999999999999999999999999988 48885
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEee-cCCCCcccccccC
Q 005066 301 -GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA-TNFPESLDKALVR 378 (715)
Q Consensus 301 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa-TN~p~~LD~aLlR 378 (715)
.+..++.+|..+... +++||+|.+.... ......+++++|+.+||++.....+ +++ ||+++.||++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~---~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA---EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc---hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 788999999998764 4589998875332 3334578899999999999776655 454 9999999999999
Q ss_pred CCCcccccccCCCCHH-HHHHHHHH
Q 005066 379 PGRFDRHIVVPNPDVE-GRRQIMES 402 (715)
Q Consensus 379 pgRFd~~I~v~~Pd~~-eR~~ILk~ 402 (715)
|||||++|+|++|+.. .|.+|+..
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp -------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999988 78888643
No 38
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=2.8e-18 Score=184.72 Aligned_cols=226 Identities=20% Similarity=0.211 Sum_probs=161.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeec
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSG 290 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~ 290 (715)
+..+++++|.++..+.|.+.+... +....+.+++|+||||||||++++++++.+ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 345689999999988877655431 123456789999999999999999999988 889999998
Q ss_pred cchhhhH--h--------------hhhH-HHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005066 291 SEFEEMF--V--------------GVGA-RRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 352 (715)
Q Consensus 291 s~~~~~~--v--------------g~~~-~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld 352 (715)
....+.+ . +... .....++..... ..|+||||||+|.+...+ .....+..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 7643221 0 1112 223444444433 348899999999985321 13456677777665
Q ss_pred ccccCCCEEEEeecCCC---CcccccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhcc---CCcccHHHHHhcCC--
Q 005066 353 GFKQNEGIIVIAATNFP---ESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVLK---ADDVDLMIIARGTP-- 423 (715)
Q Consensus 353 ~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~~~---~~dvdl~~la~~t~-- 423 (715)
......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++.+|++.++..... ..+-.+..++..+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 44325678999999987 678889887 8875 8999999999999999999875211 11222455666554
Q ss_pred -CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 424 -GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 424 -G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
| +++.+.++++.|...|..++...|+.+|+..++..+.
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 4 6788889999999988888888999999999988763
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=4.8e-19 Score=184.05 Aligned_cols=224 Identities=20% Similarity=0.238 Sum_probs=145.8
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh-hhHhhhh
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE-EMFVGVG 301 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~-~~~vg~~ 301 (715)
...++|.++..+.+.+....+. ..+...+...+.++||+||||||||++|+++|..++.+|+.+++++.. ....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4578898887666655322111 112223456778999999999999999999999999999999887522 1112233
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEeecCCCCcccc-cccCC
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDK-ALVRP 379 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~-~~~~ViVIaaTN~p~~LD~-aLlRp 379 (715)
...++.+|..+....++||||||+|.+.+.+.... ......++.|+..+++.. ...+++||++||.++.+++ .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc-
Confidence 46788899998888899999999999976543221 112334455555566544 3456889999999999988 4544
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005066 380 GRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGF----SGADLANLVNIAALKAAMDGAKAVTMADLE 455 (715)
Q Consensus 380 gRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~----sgadI~~lv~~A~~~A~~~~~~~It~edl~ 455 (715)
||+..|.+|+++. |.+|.+....... ..+.++..++..+.|+ +.+++.++++.|... ......+++.
T Consensus 188 -rf~~~i~~p~l~~--r~~i~~i~~~~~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-----~~~~~~~~~~ 258 (272)
T 1d2n_A 188 -AFSTTIHVPNIAT--GEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-----DPEYRVRKFL 258 (272)
T ss_dssp -TSSEEEECCCEEE--HHHHHHHHHHHTC-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----CGGGHHHHHH
T ss_pred -ccceEEcCCCccH--HHHHHHHHHhcCC-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----chHHHHHHHH
Confidence 9988888866554 3344443333222 2344577788888886 566666666654322 2334445555
Q ss_pred HHHH
Q 005066 456 YAKD 459 (715)
Q Consensus 456 ~A~~ 459 (715)
.++.
T Consensus 259 ~~l~ 262 (272)
T 1d2n_A 259 ALLR 262 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=8.9e-20 Score=208.65 Aligned_cols=223 Identities=22% Similarity=0.247 Sum_probs=148.3
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh----
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE---- 295 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~-~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~---- 295 (715)
.-.+|++|+++++..+.+.+.... +... .+.++||+||||||||++|+++|+.++.+|..++++.+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~-------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQK-------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHH-------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHH-------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345789999999999987655311 1111 4558999999999999999999999999999999887544
Q ss_pred -----hHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------------C
Q 005066 296 -----MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------------N 357 (715)
Q Consensus 296 -----~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~-------------~ 357 (715)
.|+|.....+...|..+....| ||||||||.+...+. ....+.|+..|+.... .
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4666666677778887765555 999999999975432 1234566666654221 1
Q ss_pred CCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-----cc---CCccc---HHHHHh-cCCCC
Q 005066 358 EGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-----LK---ADDVD---LMIIAR-GTPGF 425 (715)
Q Consensus 358 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-----~~---~~dvd---l~~la~-~t~G~ 425 (715)
.+++||+|||.++.+|++|++ ||+ .|.|+.|+.+++.+|++.++.+. .. .-.++ +..++. .+...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999998 996 78999999999999999987331 11 11122 344444 34334
Q ss_pred CHHHHHHHHHHHHHHH----HHc--CCCccCHHHHHHHHHHH
Q 005066 426 SGADLANLVNIAALKA----AMD--GAKAVTMADLEYAKDKI 461 (715)
Q Consensus 426 sgadI~~lv~~A~~~A----~~~--~~~~It~edl~~A~~~i 461 (715)
+.++|++.+..++..+ ... +...|+.+|+.+++...
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 5566665555444444 333 34579999999987543
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=9e-19 Score=189.88 Aligned_cols=218 Identities=23% Similarity=0.293 Sum_probs=149.2
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhHh--hhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh-Hhhh
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRFT--RLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGV 300 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~~--~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~-~vg~ 300 (715)
.|+|++++++.+...+.. ++...... ......+.++||+||||||||++|+++|+.++.||+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 379999999999887753 21111000 0012356789999999999999999999999999999999988754 7776
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------------
Q 005066 301 G-ARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK----------------- 355 (715)
Q Consensus 301 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~Ld~~~----------------- 355 (715)
. ...++.+|..+ ....++||||||||.+...+.... ......+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 56677787765 344578999999999987654432 2223447888888888431
Q ss_pred --cCCCEEEEeecCCC----------Cc-----------------------------------ccccccCCCCccccccc
Q 005066 356 --QNEGIIVIAATNFP----------ES-----------------------------------LDKALVRPGRFDRHIVV 388 (715)
Q Consensus 356 --~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlRpgRFd~~I~v 388 (715)
...++++|+++|.. .. ++|+|+. ||+..+.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 12334444444432 11 5677776 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhhhh-------ccCCccc---HHHHHh--cCCCCCHHHHHHHHHHHHHHHHHc
Q 005066 389 PNPDVEGRRQIMES----HMSKV-------LKADDVD---LMIIAR--GTPGFSGADLANLVNIAALKAAMD 444 (715)
Q Consensus 389 ~~Pd~~eR~~ILk~----~l~~~-------~~~~dvd---l~~la~--~t~G~sgadI~~lv~~A~~~A~~~ 444 (715)
++|+.+++.+|+.. ++... .....++ +..|+. ....+..++|+++++.+...+..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999986 32211 1111122 344553 345566789999999888777654
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=1e-17 Score=186.86 Aligned_cols=221 Identities=18% Similarity=0.265 Sum_probs=154.6
Q ss_pred CCCCCCccCC-CcHH--HHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEee
Q 005066 218 ESNTKFSDVK-GVDE--AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 289 (715)
Q Consensus 218 ~~~~~f~dv~-G~d~--~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is 289 (715)
.+..+|++++ |... +...+..++ ..+ .. +.+++|+||||||||+||+++++.+ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a---~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVA---KHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHH---HST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHH---hCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4567899987 6443 333333322 222 22 6689999999999999999999998 89999999
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
+.++...+.+.........|.......++||||||+|.+.+++ .. ...|+..++.+...+..+||++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~------~~---q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT------GV---QTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH------HH---HHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh------HH---HHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 9988766554333222233444333368999999999986421 11 22333333333344556666666666
Q ss_pred Cc---ccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 370 ES---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 370 ~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
.. ++++|++ ||. ..+.+++|+.++|.+|++.++...... ++-.+..|+..+.| +.+++.++++.+...|..
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 65 7888987 886 788999999999999999998754322 22236678888765 899999999999988877
Q ss_pred cCCCccCHHHHHHHHHHHh
Q 005066 444 DGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 444 ~~~~~It~edl~~A~~~i~ 462 (715)
.+ ..|+.+++..++....
T Consensus 316 ~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 316 TG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp SS-SCCCHHHHHHHTSTTT
T ss_pred hC-CCCCHHHHHHHHHHHh
Confidence 66 4699999999887654
No 43
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.76 E-value=6.2e-18 Score=180.66 Aligned_cols=220 Identities=24% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-------C------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------P------ 284 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------~------ 284 (715)
.++.+|++|+|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999876643221 1 11 1236999999999999999999998862 2
Q ss_pred --------------------eEEeeccchhhhHhhhhHHHHHHHHHHH---------HhCCCeEEEEcCchhhcCCCCCC
Q 005066 285 --------------------FFSCSGSEFEEMFVGVGARRVRDLFSAA---------KKRSPCIIFIDEIDAIGGSRNPK 335 (715)
Q Consensus 285 --------------------fi~is~s~~~~~~vg~~~~~vr~lF~~A---------~~~~P~ILfIDEID~l~~~r~~~ 335 (715)
++.+..+.....+.|.. .+...|... ....++||||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 22221111111112210 011122211 11236899999999883
Q ss_pred chHHHHHHHHHHHHHhhc----cc-------cCCCEEEEeecCCCC-cccccccCCCCcccccccCCC-CHHHHHHHHHH
Q 005066 336 DQQYMKMTLNQLLVELDG----FK-------QNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNP-DVEGRRQIMES 402 (715)
Q Consensus 336 ~~~~~~~~l~~LL~~Ld~----~~-------~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~P-d~~eR~~ILk~ 402 (715)
...++.|+..++. +. ...++++|++||..+ .++++|++ ||+.++.+++| +.+.+.+|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 1233445544442 11 123789999999755 79999998 99988999988 67788889877
Q ss_pred Hhhh---------------------------hc---cCCcccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHcCCCcc
Q 005066 403 HMSK---------------------------VL---KADDVDLMIIARGTPG---FSGADLANLVNIAALKAAMDGAKAV 449 (715)
Q Consensus 403 ~l~~---------------------------~~---~~~dvdl~~la~~t~G---~sgadI~~lv~~A~~~A~~~~~~~I 449 (715)
++.. .. .-++-.+..|+....+ -+.+.+.++++.|...|..+++..|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v 310 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAV 310 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 4221 00 0111112334433222 2679999999999999998898899
Q ss_pred CHHHHHHHHHHHhcc
Q 005066 450 TMADLEYAKDKIMMG 464 (715)
Q Consensus 450 t~edl~~A~~~i~~g 464 (715)
+.+|+..|+..++..
T Consensus 311 ~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 311 GRDHLKRVATMALSH 325 (350)
T ss_dssp CHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=2.4e-17 Score=162.41 Aligned_cols=201 Identities=21% Similarity=0.181 Sum_probs=143.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccch
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~ 293 (715)
.+.+|++++|.++.++.|.+.+.. . .+.++||+||||||||++++++++++ ..+++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------K-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-----------C-CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 456799999999998888876652 1 22359999999999999999999986 567888887664
Q ss_pred hhhHhhhhHHHHHHHHHHHH------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 294 EEMFVGVGARRVRDLFSAAK------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
... ..+...+.... ...++||||||+|.+.. ...+.|+..++. ...++.+|++||
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~~i~~~~ 140 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM--YSKSCRFILSCN 140 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 321 12222222221 25689999999998731 123344444443 245788899999
Q ss_pred CCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005066 368 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 446 (715)
Q Consensus 368 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 446 (715)
.++.+++++.+ ||. .+.+++|+.++..++++.++...... .+-.+..++..+.| +.+.+.++++.++..+
T Consensus 141 ~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----- 211 (226)
T 2chg_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----- 211 (226)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----
Confidence 99999999988 887 88999999999999999988654322 22235567766654 6677777766655433
Q ss_pred CccCHHHHHHHHH
Q 005066 447 KAVTMADLEYAKD 459 (715)
Q Consensus 447 ~~It~edl~~A~~ 459 (715)
+.|+.+|+++++.
T Consensus 212 ~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 EVVDADTIYQITA 224 (226)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ceecHHHHHHHhc
Confidence 6899999998875
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=5.8e-18 Score=179.94 Aligned_cols=202 Identities=18% Similarity=0.222 Sum_probs=136.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhH
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 297 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~ 297 (715)
..+.+|++++|++++++.|++.+. .+..|..+|++||||||||++|++++++++.+++.+++++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 356789999999999998888776 345677889999999999999999999999999999988753
Q ss_pred hhhhHHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 298 VGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 298 vg~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
...++..+..... ..++||||||+|.+.+ ....+.|+..++.. ..++.+|++||.++.+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGI 149 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCcccc
Confidence 2334444433222 2578999999998841 12344555555532 3567888999999999
Q ss_pred cccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-------cc-CCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005066 373 DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-------LK-ADD-VDLMIIARGTPGFSGADLANLVNIAALKAAM 443 (715)
Q Consensus 373 D~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-------~~-~~d-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 443 (715)
++++.+ ||. .+.|++|+.++|.+|++.++... .. -.+ -.+..++..+.| +.+++.+.++.++
T Consensus 150 ~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~----- 220 (324)
T 3u61_B 150 IKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS----- 220 (324)
T ss_dssp CTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG-----
T ss_pred CHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh-----
Confidence 999998 885 79999999999888776654321 11 112 335567777654 3334444444332
Q ss_pred cCCCccCHHHHHHHHH
Q 005066 444 DGAKAVTMADLEYAKD 459 (715)
Q Consensus 444 ~~~~~It~edl~~A~~ 459 (715)
....|+.+++..++.
T Consensus 221 -~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 -SKGVLDAGILSLVTN 235 (324)
T ss_dssp -GGTCBCC--------
T ss_pred -ccCCCCHHHHHHHhC
Confidence 234588888877654
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=1.9e-17 Score=176.35 Aligned_cols=198 Identities=19% Similarity=0.295 Sum_probs=135.8
Q ss_pred CCCCCCccCC-Cc--HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 218 ESNTKFSDVK-GV--DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 218 ~~~~~f~dv~-G~--d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
.++.+|++++ |. ..+...++.++. .+ ...+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899997 53 344444444333 22 2346689999999999999999999999 8999999999
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC-
Q 005066 292 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 370 (715)
Q Consensus 292 ~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~- 370 (715)
++...+.+.........|..... .++||||||+|.+..++ ... ..++..++.....+..+|+++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~------~~~---~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE------RTQ---IEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH------HHH---HHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh------HHH---HHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 88766555433322333433322 47899999999985321 122 22333333323345577777877776
Q ss_pred --cccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005066 371 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALK 440 (715)
Q Consensus 371 --~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~ 440 (715)
.++++|.+ ||+ ..+.+++ +.+++.+|++.++...... ++..+..|+..+ .+.+++.++++.+...
T Consensus 145 l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 145 LDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 57899987 886 5688999 9999999999998754322 222356688888 4788888888877655
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=1e-17 Score=187.27 Aligned_cols=205 Identities=24% Similarity=0.307 Sum_probs=148.0
Q ss_pred CCCCCccCCCcHHHH---HHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhh
Q 005066 219 SNTKFSDVKGVDEAK---QELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 295 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k---~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~ 295 (715)
.+.+|++++|++.++ ..|...+.. .. +.++||+||||||||++|+++++.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 356899999999998 556555542 11 2589999999999999999999999999999987543
Q ss_pred hHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec--CCC
Q 005066 296 MFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT--NFP 369 (715)
Q Consensus 296 ~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT--N~p 369 (715)
+...++.+|..+. ...++||||||||.+... ..+.|+..++. ..+++|++| |..
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~----~~v~lI~att~n~~ 146 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----------QQDAFLPHIED----GTITFIGATTENPS 146 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGG
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----------HHHHHHHHHhc----CceEEEecCCCCcc
Confidence 2344556665554 346799999999988432 23445555553 456777666 444
Q ss_pred CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--------CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005066 370 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--------ADDVDLMIIARGTPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 370 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~--------~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A 441 (715)
..++++|++ |+. ++.+++|+.+++..|++.++.+... -.+-.+..|+..+.| +.+++.++++.+...+
T Consensus 147 ~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 147 FELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMA 222 (447)
T ss_dssp GSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHS
T ss_pred cccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc
Confidence 578999998 886 7789999999999999999875211 112235667777554 7888889998887776
Q ss_pred HHc--CCCccCHHHHHHHHHHH
Q 005066 442 AMD--GAKAVTMADLEYAKDKI 461 (715)
Q Consensus 442 ~~~--~~~~It~edl~~A~~~i 461 (715)
... +...|+.+++.+++.+.
T Consensus 223 ~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 223 EVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CBCTTSCEECCHHHHHHHHTCC
T ss_pred ccccCCCCccCHHHHHHHHhhh
Confidence 433 44689999999987654
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=5.2e-18 Score=181.04 Aligned_cols=213 Identities=20% Similarity=0.153 Sum_probs=148.1
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh--hhHhhh
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE--EMFVGV 300 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~--~~~vg~ 300 (715)
+++|+|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.++++... ..+.|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 67899999998877655431 24899999999999999999999999999999874211 112221
Q ss_pred hHHH-HHHHHHHHHhCC---CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc---------ccCCCEEEEeecC
Q 005066 301 GARR-VRDLFSAAKKRS---PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF---------KQNEGIIVIAATN 367 (715)
Q Consensus 301 ~~~~-vr~lF~~A~~~~---P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~---------~~~~~ViVIaaTN 367 (715)
.... ....|. .... .+||||||+|.+. ....+.|+..|+.. ....+++||+|+|
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 1000 000000 0112 3799999999873 22344455444421 2345688889998
Q ss_pred CCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--------------------CCccc---HHHHH
Q 005066 368 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--------------------ADDVD---LMIIA 419 (715)
Q Consensus 368 ~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~--------------------~~dvd---l~~la 419 (715)
..+ .++++|++ ||+.++.+++|+.+++.+|++.++..... .-.++ +..++
T Consensus 159 p~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp TTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred CCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 554 38999998 99988999999999999999998754211 00111 22222
Q ss_pred h-------------------cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005066 420 R-------------------GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 420 ~-------------------~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g 464 (715)
. ...|.|++.+.++++.|...|..+++..|+.+|+..++..++..
T Consensus 237 ~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 237 ELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 2 11266999999999999999999999999999999999988754
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=6.8e-17 Score=160.71 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=145.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 284 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------------- 284 (715)
.+..|++++|.++.++.|.+.+.. ...|..++|+||||||||++++++++.++..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456799999999999888877652 2345689999999999999999999988542
Q ss_pred ----------eEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 285 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 285 ----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
++.++... ......++.++..+. ...+.+|||||+|.+. ...++.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHH
Confidence 22222211 112234555555442 2357999999999872 2234556666
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgad 429 (715)
++. ...++.+|++||.++.+++.+.+ |+ ..+.+++|+.++..++++.++...... .+-.+..++..+.| +++.
T Consensus 150 l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~ 223 (250)
T 1njg_A 150 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 223 (250)
T ss_dssp HHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 653 34678899999999999998887 65 588999999999999999998654322 22335678888876 8999
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.++++.|... +...|+.+|+++++
T Consensus 224 ~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 224 ALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHhc----cCceecHHHHHHHh
Confidence 99999877533 34589999998874
No 50
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=3.1e-17 Score=177.28 Aligned_cols=214 Identities=21% Similarity=0.224 Sum_probs=152.5
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----------CCCeEEeecc
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----------GVPFFSCSGS 291 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----------~~~fi~is~s 291 (715)
+++++|.++.++.|.+.+..+.. ...|.+++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 48899999999998887764321 3456799999999999999999999988 9999999987
Q ss_pred chh-hhH------h-----------hhh-HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHH-HHHHHHHh
Q 005066 292 EFE-EMF------V-----------GVG-ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMT-LNQLLVEL 351 (715)
Q Consensus 292 ~~~-~~~------v-----------g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~-l~~LL~~L 351 (715)
... ..+ . +.. ...+..++..+.... +||||||+|.+.... .... +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~-------~~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR-------GGDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST-------TSHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC-------CCceeHHHHhcCC
Confidence 643 110 1 111 223444444444443 499999999985321 0122 44444322
Q ss_pred hccccCCCEEEEeecCCC---CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc---cCCcccHHHHHhcCCC-
Q 005066 352 DGFKQNEGIIVIAATNFP---ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL---KADDVDLMIIARGTPG- 424 (715)
Q Consensus 352 d~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~---~~~dvdl~~la~~t~G- 424 (715)
.++.||++||.+ +.+++.+.+ ||...+.|++|+.++..+|++.++.... ...+-.+..++..+.+
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTT
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhc
Confidence 788999999987 678888887 8877999999999999999999886421 1112224556665541
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 425 -FSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 425 -~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
-+.+.+.++++.|...|. +...|+.+|+..++....
T Consensus 235 ~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 256677788888887775 567899999999988764
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=3.5e-18 Score=164.51 Aligned_cols=159 Identities=24% Similarity=0.399 Sum_probs=116.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++++++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4579999999987666665432 1 345689999999999999999999987 78899999
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
+..+. ..+.+.....++.++..+. ...++||||||+|.+...+...........+..++ ...++.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-------~~~~~~~i~~~ 158 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-------ARGELHCVGAT 158 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-------HTTSCCEEEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-------ccCCeEEEEeC
Confidence 88765 2345566677788887664 45688999999999975442221122223333333 23567888899
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIM 400 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL 400 (715)
|.++ .+++++.+ ||+ .|.+++|+.+++.+||
T Consensus 159 ~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8876 68999998 998 6999999999998875
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=4.4e-17 Score=193.04 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=162.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++|+|.++.++.+.+++. ...+.++||+||||||||++|++++..+ +.+++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4579999999988777665432 1245689999999999999999999987 66788888
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
++.+. ..+.|..+..++.+|..+....++||||||+|.+.+.+.... ... ..+. +..+-....+.+|++|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~---~~~~----L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANL----IKPLLSSGKIRVIGST 322 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH---HHHH----HSSCSSSCCCEEEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH---HHHH----HHHHHhCCCeEEEEEe
Confidence 87776 347778888999999999888899999999999977654321 221 1222 2233345778999999
Q ss_pred CCCC-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-----CcccHHHHHhc-----CCCCCHHHHH
Q 005066 367 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-----DDVDLMIIARG-----TPGFSGADLA 431 (715)
Q Consensus 367 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-----~dvdl~~la~~-----t~G~sgadI~ 431 (715)
|.++ .+|++|.| ||+ .+.|+.|+.+++.+||+.++...... .+-.+..++.. ...+.+..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 9764 47899998 998 79999999999999999887653211 11123334433 3446677888
Q ss_pred HHHHHHHHHHHH----cCCCccCHHHHHHHHHHHh
Q 005066 432 NLVNIAALKAAM----DGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 432 ~lv~~A~~~A~~----~~~~~It~edl~~A~~~i~ 462 (715)
.++++|+..+.. .....|+.+|+..++.++.
T Consensus 400 ~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 999998877655 3456899999999998875
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.9e-17 Score=186.68 Aligned_cols=221 Identities=18% Similarity=0.256 Sum_probs=143.5
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcC--chhHhhhCC---CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRD--PKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~--~~~~~~lg~---~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
.+.+|+||+|.+++++.|++++..+.. +..|...|. ..++++||+||||||||++|+++|++++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 456899999999999999988775221 122333333 356899999999999999999999999999999999887
Q ss_pred hhhHhhhhH-------HHHHHHHHHH-----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005066 294 EEMFVGVGA-------RRVRDLFSAA-----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 361 (715)
Q Consensus 294 ~~~~vg~~~-------~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~Vi 361 (715)
......... ..+..+|..+ ....++||||||+|.+..... . .++.|+..++. ....++
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----~----~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----G----GVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----T----HHHHHHHHHHH--CSSCEE
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----H----HHHHHHHHHHh--cCCCEE
Confidence 654322111 0123334333 235679999999999965321 1 13334433332 223455
Q ss_pred EEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005066 362 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALK 440 (715)
Q Consensus 362 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~~A~~~ 440 (715)
+|+++.....+++ +. |+...+.|++|+.+++.++++..+.+... -.+-.+..|+..+.| |++.+++.....
T Consensus 184 li~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~~L~~~ 255 (516)
T 1sxj_A 184 LICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLLSTI 255 (516)
T ss_dssp EEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHHTHH
T ss_pred EEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHH
Confidence 5555444444543 43 44568999999999999999888765322 222336778887754 566555544433
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 005066 441 AAMDGAKAVTMADLEYAKD 459 (715)
Q Consensus 441 A~~~~~~~It~edl~~A~~ 459 (715)
+. +...|+.+++..++.
T Consensus 256 ~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 256 ST--TTKTINHENINEISK 272 (516)
T ss_dssp HH--HSSCCCTTHHHHHHH
T ss_pred Hh--cCCCCchHHHHHHHH
Confidence 33 345688888776655
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=5.2e-17 Score=163.07 Aligned_cols=206 Identities=14% Similarity=0.139 Sum_probs=139.3
Q ss_pred CCCCCccCCCc---HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 219 SNTKFSDVKGV---DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 219 ~~~~f~dv~G~---d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
++.+|++++|. ..+.+.++.++. ...+.++||+||||||||++|+++++++ +.+++.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS------------GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45789999973 344444444332 1145689999999999999999999987 47899999988
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE-EEEeecCCCC-
Q 005066 293 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI-IVIAATNFPE- 370 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~V-iVIaaTN~p~- 370 (715)
+...+... +.. ...+++|||||+|.+... ......+..+ ++.......+ +|+++++.++
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~------~~~~~~l~~~---l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGH------PLWEEAIFDL---YNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTC------HHHHHHHHHH---HHHHHHHCSCEEEEEESSCTTT
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCC------HHHHHHHHHH---HHHHHHcCCCeEEEEcCCCHHH
Confidence 76543211 111 134689999999988432 1112223333 3322233344 5555544444
Q ss_pred --cccccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 371 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 371 --~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
.+++.+.+ ||. ..+.+++|+.+++.++++.++...... .+..+..++..+.| +.+++.++++.+...|..++
T Consensus 152 ~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~ 228 (242)
T 3bos_A 152 AGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ 228 (242)
T ss_dssp TTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC
Confidence 45577776 775 789999999999999999998754322 22235567777765 88999999999988876555
Q ss_pred CCccCHHHHHHHHH
Q 005066 446 AKAVTMADLEYAKD 459 (715)
Q Consensus 446 ~~~It~edl~~A~~ 459 (715)
..|+.+|++.++.
T Consensus 229 -~~It~~~v~~~l~ 241 (242)
T 3bos_A 229 -RKLTIPFVKEMLR 241 (242)
T ss_dssp -CCCCHHHHHHHHT
T ss_pred -CCCcHHHHHHHhh
Confidence 5699999988763
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.73 E-value=3.7e-16 Score=167.89 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=157.1
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVG 299 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg 299 (715)
..+|++++|.+.+++.+...+..-+ .....+.+++|+||||||||+|++++|++++.++...++..+...
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~--- 90 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--- 90 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH---
Confidence 4479999999998888876665321 113456789999999999999999999999999988877654321
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEEE
Q 005066 300 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIVI 363 (715)
Q Consensus 300 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~----------------~~~~ViVI 363 (715)
..+..++.. ...++|+||||+|.+.. .....+ +..++.+. ....+.++
T Consensus 91 ---~~l~~~~~~--~~~~~v~~iDE~~~l~~--------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 91 ---GDMAAILTS--LERGDVLFIDEIHRLNK--------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---HHHHHHHHH--CCTTCEEEEETGGGCCH--------HHHHHH---HHHHHTSCCCC---------------CCCEEE
T ss_pred ---HHHHHHHHH--ccCCCEEEEcchhhcCH--------HHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 122333322 23467999999998842 122222 22232221 01246778
Q ss_pred eecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005066 364 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAA 442 (715)
Q Consensus 364 aaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~ 442 (715)
++||.+..|++.+++ ||...+.+++|+.+++.+|++...+...... +-.+..|+..+.| +++.+.++++.+...|.
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 899999999999998 9987889999999999999999876543322 2235668888876 67899999999998888
Q ss_pred HcCCCccCHHHHHHHHHHHh
Q 005066 443 MDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 443 ~~~~~~It~edl~~A~~~i~ 462 (715)
..+...|+.++++++++.+.
T Consensus 232 ~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHHT
T ss_pred HcCCCCcCHHHHHHHHHHhC
Confidence 88888999999999998864
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.8e-16 Score=170.28 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=157.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh------CCCeEEeeccc
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------GVPFFSCSGSE 292 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el------~~~fi~is~s~ 292 (715)
+...+++++|.++..+.|.+.+.... ....+..++|+||||||||++++++++.+ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34556899999988777776543211 12456689999999999999999999988 89999999865
Q ss_pred hhhhH----------------hhh-hHHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005066 293 FEEMF----------------VGV-GARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 293 ~~~~~----------------vg~-~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~ 354 (715)
....+ .+. .......++...... .|+||||||+|.+..... ...+..|+..++.+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence 32210 011 122244444444443 389999999999863321 12455666666544
Q ss_pred ccCCCEEEEeecCCC---CcccccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhccCCccc---HHHHHhcCC--CC
Q 005066 355 KQNEGIIVIAATNFP---ESLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIARGTP--GF 425 (715)
Q Consensus 355 ~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd---l~~la~~t~--G~ 425 (715)
...++.+|++||.+ +.+++.+.+ ||. +.+.+++|+.++..+|++.++........++ +..++..+. +-
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 44678899999877 457777776 665 4899999999999999999886433222222 344555554 13
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 426 SGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 426 sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
+++.+.++|+.|...|..++...|+.+|+..|+..+.
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 6778888999999888888888999999999988764
No 57
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=5.5e-17 Score=176.50 Aligned_cols=231 Identities=21% Similarity=0.237 Sum_probs=142.4
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhH-----------------hhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeE
Q 005066 225 DVKGVDEAKQELEEIVHY-LRDPKRF-----------------TRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFF 286 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~-L~~~~~~-----------------~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi 286 (715)
+|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999887732 1111100 0012335668999999999999999999999999999
Q ss_pred Eeeccchhh-hHhhhh-HHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc--
Q 005066 287 SCSGSEFEE-MFVGVG-ARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK-- 355 (715)
Q Consensus 287 ~is~s~~~~-~~vg~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~Ld~~~-- 355 (715)
.++++.+.. .+.|.. ...+..+|..+. ...++||||||+|.+...+.... .......++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999988763 455543 344556655432 33578999999999976532211 1111225677777777531
Q ss_pred -----------------cCCCEEEEeecCCCCc------------------------------------------ccccc
Q 005066 356 -----------------QNEGIIVIAATNFPES------------------------------------------LDKAL 376 (715)
Q Consensus 356 -----------------~~~~ViVIaaTN~p~~------------------------------------------LD~aL 376 (715)
...++++|+++|. +. +.|.|
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1255678888772 22 34555
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHH----Hhhhh-------ccCCcc---cHHHHHhcCC--CCCHHHHHHHHHHHHHH
Q 005066 377 VRPGRFDRHIVVPNPDVEGRRQIMES----HMSKV-------LKADDV---DLMIIARGTP--GFSGADLANLVNIAALK 440 (715)
Q Consensus 377 lRpgRFd~~I~v~~Pd~~eR~~ILk~----~l~~~-------~~~~dv---dl~~la~~t~--G~sgadI~~lv~~A~~~ 440 (715)
.+ ||+..+.|++++.++...|+.. ++... ...-.+ .+..|+.... ..+.++|.++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 54 8888899999999999999973 22110 001112 2344555432 35689999999988877
Q ss_pred HHHcCC------CccCHHHHHHHH
Q 005066 441 AAMDGA------KAVTMADLEYAK 458 (715)
Q Consensus 441 A~~~~~------~~It~edl~~A~ 458 (715)
+..+.. ..|+.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 665321 258888876543
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=5.3e-17 Score=170.76 Aligned_cols=203 Identities=23% Similarity=0.308 Sum_probs=137.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM---- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~---- 296 (715)
++++|++++++.+...+......- .-..+++.++||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999988776532100 0011223479999999999999999999998 678999999876432
Q ss_pred -Hhhh-----hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCEE
Q 005066 297 -FVGV-----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGII 361 (715)
Q Consensus 297 -~vg~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~Vi 361 (715)
+.|. +......+........++||||||+|.+. ...++.|+..|+... ...+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 1211 00000122333344556899999999883 234555665555322 113688
Q ss_pred EEeecCC--------------------------CCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc------
Q 005066 362 VIAATNF--------------------------PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK------ 409 (715)
Q Consensus 362 VIaaTN~--------------------------p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~------ 409 (715)
+|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++.+...
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 4467888886 99999999999999999999998875311
Q ss_pred -CCcc---cHHHHHhcCC--CCCHHHHHHHHHHHHHHHH
Q 005066 410 -ADDV---DLMIIARGTP--GFSGADLANLVNIAALKAA 442 (715)
Q Consensus 410 -~~dv---dl~~la~~t~--G~sgadI~~lv~~A~~~A~ 442 (715)
...+ .+..|+.... ..+.++|+++++.+...+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1112 2445666554 5678999999988776543
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.71 E-value=5.9e-16 Score=167.09 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=158.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC--eEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccch
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK--GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 293 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk--gvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~ 293 (715)
+..+++++|.++..+.|.+.+.... ....+. +++|+||||||||++++++++.+ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~--------~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWL--------RNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHH--------HSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 4456899999999888888776421 122334 89999999999999999999998 678999997654
Q ss_pred hhh--Hh--------------hhhHH-HHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005066 294 EEM--FV--------------GVGAR-RVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 355 (715)
Q Consensus 294 ~~~--~v--------------g~~~~-~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~ 355 (715)
... +. +.... ....+..... ...|.||||||+|.+. ...+..|+..++.+.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCC
Confidence 321 10 10111 1222222222 2458999999999871 234566666665443
Q ss_pred c--CCCEEEEeecCCC---CcccccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhcc---CCcccHHHHHhcCC---
Q 005066 356 Q--NEGIIVIAATNFP---ESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVLK---ADDVDLMIIARGTP--- 423 (715)
Q Consensus 356 ~--~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~~~---~~dvdl~~la~~t~--- 423 (715)
. ..++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..++++.++..... -.+-.+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 2578899999988 567777776 7765 7899999999999999999875321 12223556777763
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 424 -----GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 424 -----G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
+-+++.+.++++.|...|..++...|+.+|+..++..+.
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 236788899999999999888888999999999988764
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.1e-17 Score=178.76 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEeeccchhh
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFEE 295 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is~s~~~~ 295 (715)
|.|.++..+.|...+.. .+....|.+++|+||||||||++++++++++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 55566555555544432 2334568899999999999999999999998 35688999876543
Q ss_pred h----------Hh------hhhHHHHHHHHHHH--HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 005066 296 M----------FV------GVGARRVRDLFSAA--KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN 357 (715)
Q Consensus 296 ~----------~v------g~~~~~vr~lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~ 357 (715)
. +. +.....++.+|... ....++||||||+|.+. . +.++..|+.... ...
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------~----q~~L~~l~~~~~--~~~ 161 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------S----EKILQYFEKWIS--SKN 161 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------C----THHHHHHHHHHH--CSS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------c----chHHHHHHhccc--ccC
Confidence 2 11 22345677888764 35668999999999996 1 245666665433 245
Q ss_pred CCEEEEeecCCCCc----ccccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhh
Q 005066 358 EGIIVIAATNFPES----LDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 358 ~~ViVIaaTN~p~~----LD~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
.+++||+++|..+. |++++.+ ||. ..|.|++++.++..+|++..+...
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 67999999998764 4555555 886 579999999999999999999764
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=1.3e-16 Score=179.31 Aligned_cols=203 Identities=23% Similarity=0.316 Sum_probs=136.8
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 45799999999988877766542 234589999999999999999999997 78899999
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
++ ..|.|.....++.+|..+....|+||||| +. ....+.|+..|+ .+.+.+|++||.+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~----------~~a~~~L~~~L~----~g~v~vI~at~~~ 301 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------IDASNILKPSLA----RGELQCIGATTLD 301 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECCTT
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc----------hhHHHHHHHhhc----CCCEEEEecCCHH
Confidence 88 56778878889999999998889999999 10 112233333332 4679999999988
Q ss_pred C-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-----cHHHHHhc-----CCCCCHHHHHHHH
Q 005066 370 E-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-----DLMIIARG-----TPGFSGADLANLV 434 (715)
Q Consensus 370 ~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-----dl~~la~~-----t~G~sgadI~~lv 434 (715)
+ .+|++|.| ||. .|.|+.|+.+++.+||+.++.+......+ .+..++.. ...+.+....+++
T Consensus 302 e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 7 68999999 998 59999999999999999988764322222 13333333 2334456777788
Q ss_pred HHHHHHHHHcCC-CccCHHHHHHHHH
Q 005066 435 NIAALKAAMDGA-KAVTMADLEYAKD 459 (715)
Q Consensus 435 ~~A~~~A~~~~~-~~It~edl~~A~~ 459 (715)
.+|+..+..+.. ......+++..+.
T Consensus 379 ~~a~~~~~~~~~~~p~~i~~l~~~i~ 404 (468)
T 3pxg_A 379 DEAGSKVRLRSFTTPPNLKELEQKLD 404 (468)
T ss_dssp HHHHHHHHHHTTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHH
Confidence 777766554432 2333444444443
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=2e-16 Score=189.99 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=136.1
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 5689999999977666665442 1 234589999999999999999999998 88999999
Q ss_pred ccchh--hhHhhhhHHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 290 GSEFE--EMFVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 290 ~s~~~--~~~vg~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
++.+. ..+.|.....++.+|..+... .|+||||||+|.+.+.+...+.......+..++ + ...+.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l---~----~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL---A----RGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH---H----TTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH---h----CCCeEEEEec
Confidence 99886 457788888999999998765 689999999999976543322222222333333 2 3567899999
Q ss_pred CCCC----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc-----cHHHHHh-----cCCCCCHHHHHH
Q 005066 367 NFPE----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-----DLMIIAR-----GTPGFSGADLAN 432 (715)
Q Consensus 367 N~p~----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv-----dl~~la~-----~t~G~sgadI~~ 432 (715)
|.++ .+|++|.| ||+. |.|+.|+.+++.+||+.++.......++ .+..++. .+..+.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 9775 47999999 9984 9999999999999999887654222222 1333333 245677888889
Q ss_pred HHHHHHHHHHHc
Q 005066 433 LVNIAALKAAMD 444 (715)
Q Consensus 433 lv~~A~~~A~~~ 444 (715)
++.+|+..+...
T Consensus 384 lldea~a~~~~~ 395 (854)
T 1qvr_A 384 LIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999888777654
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=2.9e-16 Score=167.68 Aligned_cols=206 Identities=19% Similarity=0.190 Sum_probs=143.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC------CCeEEeeccc
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG------VPFFSCSGSE 292 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~------~~fi~is~s~ 292 (715)
.+.+|++++|.+++++.|...+. . ...+ ++||+||||||||++|+++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK---S--------ANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT---C--------TTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh---c--------CCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 46789999999999887776543 1 2223 499999999999999999999864 4688888876
Q ss_pred hhhhHhhhhHHHHHHHHHHHH----------------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005066 293 FEEMFVGVGARRVRDLFSAAK----------------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 356 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A~----------------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~ 356 (715)
.... ..+++.+.... ...+.||||||+|.+.. ...+.|+..++..
T Consensus 100 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~-- 160 (353)
T 1sxj_D 100 ERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY-- 160 (353)
T ss_dssp CCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--
T ss_pred ccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc--
Confidence 4211 11222111111 12457999999998841 2235555555543
Q ss_pred CCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-CCcccHHHHHhcCCCCCHHHHHHHHH
Q 005066 357 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVN 435 (715)
Q Consensus 357 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~-~~dvdl~~la~~t~G~sgadI~~lv~ 435 (715)
.....+|.+||.++.+++++.+ |+. .+.+++|+.++...+++..+..... -.+-.+..++..+.| +.+.+.++++
T Consensus 161 ~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~ 236 (353)
T 1sxj_D 161 SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQ 236 (353)
T ss_dssp TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3456677788999999999987 886 7899999999999999998865332 223346677887775 5677777777
Q ss_pred HHHHHHHHcCCC-ccCHHHHHHHHH
Q 005066 436 IAALKAAMDGAK-AVTMADLEYAKD 459 (715)
Q Consensus 436 ~A~~~A~~~~~~-~It~edl~~A~~ 459 (715)
.+...+.+.+.. .|+.+|+..++.
T Consensus 237 ~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 237 SASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHhcCCCccCccccHHHHHHHhC
Confidence 777666554433 799999987654
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=2.9e-16 Score=186.15 Aligned_cols=196 Identities=21% Similarity=0.269 Sum_probs=137.2
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhh
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVG 299 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk-gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg 299 (715)
++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5689999999999888875332100 112233 69999999999999999999998 789999999999876544
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCEEEEeecCCCC
Q 005066 300 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGIIVIAATNFPE 370 (715)
Q Consensus 300 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~ViVIaaTN~p~ 370 (715)
. ...++...+...++||||||||.+. ..+++.|+..|+... ...+++||+|||.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 3 2223344455667899999999872 244566666665422 234689999999754
Q ss_pred c------------ccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc-------cCCcc---cHHHHHh--cCCCCC
Q 005066 371 S------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL-------KADDV---DLMIIAR--GTPGFS 426 (715)
Q Consensus 371 ~------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~-------~~~dv---dl~~la~--~t~G~s 426 (715)
. ++|.|++ ||+.+|.|++|+.+++.+|++.++.... ..-.+ .+..|+. +...++
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 3 6777876 9999999999999999999999886531 11112 2344554 455567
Q ss_pred HHHHHHHHHHHHHH
Q 005066 427 GADLANLVNIAALK 440 (715)
Q Consensus 427 gadI~~lv~~A~~~ 440 (715)
.++|+++++.+...
T Consensus 710 ~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 710 ARPLRRAIQKHVED 723 (758)
T ss_dssp TTTHHHHHHHHTHH
T ss_pred ChHHHHHHHHHHHH
Confidence 78888888765443
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=3.3e-16 Score=185.72 Aligned_cols=189 Identities=23% Similarity=0.321 Sum_probs=135.6
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++|+|.++.++.+.+++. ...+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4578999999999888776654 1334589999999999999999999997 88888888
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 290 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 290 ~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
+ ...|.|..+.+++.+|..+....|+||||| + .....+.|+..|+ ...+.+|++||..
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~----~~~v~~I~at~~~ 301 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA----RGELQCIGATTLD 301 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECCTT
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHh----cCCEEEEeCCChH
Confidence 7 556788888899999999998899999999 1 0112233433333 5679999999988
Q ss_pred C-----cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCccc-----HHHHHh-----cCCCCCHHHHHHHH
Q 005066 370 E-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIAR-----GTPGFSGADLANLV 434 (715)
Q Consensus 370 ~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvd-----l~~la~-----~t~G~sgadI~~lv 434 (715)
+ .+|++|.| ||. .|.|+.|+.+++.+||+.++........++ +..++. .+.++.+.....++
T Consensus 302 ~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 8 69999999 995 699999999999999998887643322222 233332 24567788888899
Q ss_pred HHHHHHHHHcC
Q 005066 435 NIAALKAAMDG 445 (715)
Q Consensus 435 ~~A~~~A~~~~ 445 (715)
.+|+..+....
T Consensus 379 ~~a~~~~~~~~ 389 (758)
T 3pxi_A 379 DEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 98887765543
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=1.4e-16 Score=153.19 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=109.9
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----------CCCeEEee
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 289 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----------~~~fi~is 289 (715)
+.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|++++..+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 457999999998766665443 22 235689999999999999999999987 78889988
Q ss_pred ccchhhh--HhhhhHHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCC-CCchHHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 290 GSEFEEM--FVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRN-PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 290 ~s~~~~~--~vg~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~-~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
+..+... +.+.....++.++..+... .|++|||||+|.+...+. ..........+..++ + ..++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~---~----~~~~~ii~~ 158 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML---A----RGELRCIGA 158 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHH---H----TTCSCEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHH---h----cCCeeEEEe
Confidence 8776532 4455566778888777654 688999999999975443 211122222233332 2 366889999
Q ss_pred cCCCC-----cccccccCCCCcccccccCCCC
Q 005066 366 TNFPE-----SLDKALVRPGRFDRHIVVPNPD 392 (715)
Q Consensus 366 TN~p~-----~LD~aLlRpgRFd~~I~v~~Pd 392 (715)
||.++ .+|+++.+ ||+ .|.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99776 58999998 998 48999886
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=6.9e-16 Score=182.82 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=136.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCC---CC-CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhh---
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK---LP-KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--- 296 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~---~p-kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~--- 296 (715)
.+|+|++++++.+...+...+ .|.. .| .++||+||||||||++|++++..++.+|+.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 358899999888887766422 2322 23 369999999999999999999999999999999988653
Q ss_pred ---------HhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------CC
Q 005066 297 ---------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------NE 358 (715)
Q Consensus 297 ---------~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~---------~~ 358 (715)
|+|.... ..+....+...++||||||||.+. ..+++.|+..|+...- ..
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 4443221 223444555667999999999872 3356666666663211 24
Q ss_pred CEEEEeecCCCC-------------------------cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc----
Q 005066 359 GIIVIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK---- 409 (715)
Q Consensus 359 ~ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~---- 409 (715)
+++||+|||.+. .++|+|++ |||..|.|++|+.+++..|++.++.+...
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999754 56788887 99999999999999999999999864310
Q ss_pred ---CCccc---HHHHHhc--CCCCCHHHHHHHHHHHHHH
Q 005066 410 ---ADDVD---LMIIARG--TPGFSGADLANLVNIAALK 440 (715)
Q Consensus 410 ---~~dvd---l~~la~~--t~G~sgadI~~lv~~A~~~ 440 (715)
...++ +..|+.. ...++.++|.++++.+...
T Consensus 676 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp TTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred CCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 01122 3334443 2345567888777766543
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.65 E-value=6e-16 Score=162.47 Aligned_cols=205 Identities=21% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~ 292 (715)
..+.+|++++|++++++.|.+.+. . ...| ++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 356789999999999888776543 1 2333 49999999999999999999987 45688888876
Q ss_pred hhhhHhhhhHHHHHHHHHHH-H-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 293 FEEMFVGVGARRVRDLFSAA-K-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A-~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
.... ......+....... . ...+.||||||+|.+. ....+.|+..++. ...++++|++||.++
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNYVS 143 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCChh
Confidence 4321 11112222221110 0 2457899999999883 1234556655553 346788999999999
Q ss_pred cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005066 371 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 449 (715)
Q Consensus 371 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 449 (715)
.+++++.+ |+. .+.|++|+.+++.+++..++.+.... .+-.+..++..+.| +.+.+.++++.+.. . ...|
T Consensus 144 ~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~---~--~~~i 214 (319)
T 2chq_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA---I--GEVV 214 (319)
T ss_dssp GSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH---S--SSCB
T ss_pred hcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---c--CCCC
Confidence 99999987 776 89999999999999999988754332 22235567766654 45555555554332 1 3568
Q ss_pred CHHHHHHHH
Q 005066 450 TMADLEYAK 458 (715)
Q Consensus 450 t~edl~~A~ 458 (715)
+.+++..++
T Consensus 215 ~~~~v~~~~ 223 (319)
T 2chq_A 215 DADTIYQIT 223 (319)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHH
Confidence 988887653
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=3.5e-15 Score=160.48 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=146.0
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC--------------
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 284 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~-------------- 284 (715)
.+.+|++++|.+++++.|...+.. ...+..+||+||||||||++|+++++.++..
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 456799999999999988877652 3456689999999999999999999988642
Q ss_pred ----------eEEeeccchhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005066 285 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 350 (715)
Q Consensus 285 ----------fi~is~s~~~~~~vg~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 350 (715)
++.++++. ..+...++.++..+.. ..+.||||||+|.+. ....+.|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHH
Confidence 22222211 0112345666666542 346899999999883 2345666666
Q ss_pred hhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHH
Q 005066 351 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 351 Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgad 429 (715)
++. ...++++|++||.++.+++.+.+ |+ ..+.+++|+.++..++++.++++.... .+-.+..++..+.| +.++
T Consensus 143 le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~ 216 (373)
T 1jr3_A 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 216 (373)
T ss_dssp HHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHH
Confidence 664 35678888899989889999887 76 588999999999999999998764332 22235667888865 7888
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005066 430 LANLVNIAALKAAMDGAKAVTMADLEYAK 458 (715)
Q Consensus 430 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 458 (715)
+.++++.+...+ ...|+.+++..++
T Consensus 217 ~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 217 ALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 888888775432 3579999987664
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3e-15 Score=157.36 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=142.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccch
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~ 293 (715)
.+.+|++++|.+++++.|.+.+. ....|. +||+||||+|||++|+++++.+ +.+++.+++++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAK-----------DGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHH-----------SCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHHHCCHHHHHHHHHHHH-----------cCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 45679999999999988887664 133444 9999999999999999999986 456888887653
Q ss_pred hhhHhhhhHHHHHHHHHHHH-------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 294 EEMFVGVGARRVRDLFSAAK-------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.. ...+++++.... ...+.||||||+|.+.. ...+.|+..++. ...++.+|.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~il~~ 144 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMEL--YSNSTRFAFAC 144 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHH--TTTTEEEEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhc--cCCCceEEEEe
Confidence 21 234455555443 23478999999998831 224455555553 34667888889
Q ss_pred CCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005066 367 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 445 (715)
Q Consensus 367 N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 445 (715)
|.++.+++.+.+ |+. .+.|++|+.++..++++.++...... .+-.+..++..+.| +.+.+.++++.+...
T Consensus 145 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~----- 215 (323)
T 1sxj_B 145 NQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG----- 215 (323)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----
T ss_pred CChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----
Confidence 999999999987 775 89999999999999999988654322 22235567777654 556666666554421
Q ss_pred CCccCHHHHHHHHH
Q 005066 446 AKAVTMADLEYAKD 459 (715)
Q Consensus 446 ~~~It~edl~~A~~ 459 (715)
...|+.+++..++.
T Consensus 216 ~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 HGLVNADNVFKIVD 229 (323)
T ss_dssp HSSBCHHHHHHHHT
T ss_pred CCCcCHHHHHHHHC
Confidence 14688888877653
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.61 E-value=1.5e-15 Score=156.89 Aligned_cols=204 Identities=20% Similarity=0.206 Sum_probs=121.5
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccchhhhH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEMF 297 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~~~~~ 297 (715)
.+|++++|.++..+.+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999998888877765321 245899999999999999999999874 799999999875432
Q ss_pred h-----hhhHHH-------HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc---------cc
Q 005066 298 V-----GVGARR-------VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF---------KQ 356 (715)
Q Consensus 298 v-----g~~~~~-------vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~---------~~ 356 (715)
. |..... ....|.. ..+++|||||||.+.. .....|+..++.. ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCcccc
Confidence 1 110000 0112222 2357999999998841 2234444444421 11
Q ss_pred CCCEEEEeecCCC-C------cccccccCCCCcccccccCCCCHHH----HHHHHHHHhhhh----ccC--Cccc---HH
Q 005066 357 NEGIIVIAATNFP-E------SLDKALVRPGRFDRHIVVPNPDVEG----RRQIMESHMSKV----LKA--DDVD---LM 416 (715)
Q Consensus 357 ~~~ViVIaaTN~p-~------~LD~aLlRpgRFd~~I~v~~Pd~~e----R~~ILk~~l~~~----~~~--~dvd---l~ 416 (715)
..++.||++||.+ . .+++.|.+ ||+. +.+..|+..+ ...+++++++.. ... ..++ +.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 2467899999974 1 35677776 7752 4455555544 445555665432 111 1233 33
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 417 IIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 417 ~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
.|.......+.++|.++++.+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 4555554456789999998877655 2345665554
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=7.2e-15 Score=154.76 Aligned_cols=205 Identities=21% Similarity=0.239 Sum_probs=138.9
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC-----CCeEEeeccc
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 292 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~-----~~fi~is~s~ 292 (715)
..+.+|++++|++++++.|...+.. ...| ++||+||||||||++|+++++.+. .+++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 3466899999999999988877652 1223 599999999999999999999863 3578888776
Q ss_pred hhhhHhhhhHHHHHHHHHHH--HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 293 FEEMFVGVGARRVRDLFSAA--KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 293 ~~~~~vg~~~~~vr~lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
.... ......+....... ....+.||||||+|.+. ....+.|+..++. ...++.+|++||.++
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSS 151 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHH--TTTTEEEEEEESCGG
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCCcc
Confidence 4321 11111122211100 11457899999999883 1234555555553 345678888999999
Q ss_pred cccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005066 371 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 449 (715)
Q Consensus 371 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 449 (715)
.+++.+.+ |+. .+.|++|+.++..++++.++...... .+-.+..++..+.| +.+.+.++++.+.. ....|
T Consensus 152 ~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~~~~i 222 (327)
T 1iqp_A 152 KIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDKKI 222 (327)
T ss_dssp GSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----TCSEE
T ss_pred ccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----cCCCC
Confidence 99999987 776 78999999999999999888654321 22235567776654 56666666654432 23468
Q ss_pred CHHHHHHHH
Q 005066 450 TMADLEYAK 458 (715)
Q Consensus 450 t~edl~~A~ 458 (715)
+.+++..++
T Consensus 223 ~~~~v~~~~ 231 (327)
T 1iqp_A 223 TDENVFMVA 231 (327)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHH
Confidence 888887653
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=3.9e-16 Score=176.56 Aligned_cols=209 Identities=20% Similarity=0.185 Sum_probs=132.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccc-hhhhHhhh-
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE-FEEMFVGV- 300 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~-~~~~~vg~- 300 (715)
.|+|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- ..+...|.
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 588999988776544321 23899999999999999999999884 4666666542 11222221
Q ss_pred -hHH-HHHHHHHHHHhC---CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------ccCCCEEEEeecC
Q 005066 301 -GAR-RVRDLFSAAKKR---SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN 367 (715)
Q Consensus 301 -~~~-~vr~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaTN 367 (715)
... .-...|..+... .++|||||||+.+. ..+.+.|+..|+.. ...+..++|+|||
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN 157 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASN 157 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEES
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccc
Confidence 111 012223222222 46799999998762 33455666666421 1112235677778
Q ss_pred CCCc---ccccccCCCCcccccccCCCCH-HHHHHHHHHHhhhh-------------------------ccCCcccHHHH
Q 005066 368 FPES---LDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSKV-------------------------LKADDVDLMII 418 (715)
Q Consensus 368 ~p~~---LD~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk~~l~~~-------------------------~~~~dvdl~~l 418 (715)
.+.. +.+++++ ||...+.+|+|+. +++..|++.+.... ....++ +..+
T Consensus 158 ~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i 234 (500)
T 3nbx_X 158 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELI 234 (500)
T ss_dssp SCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHH
T ss_pred cCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHH
Confidence 5332 3458887 9998999999987 77889998765311 011111 1222
Q ss_pred Hh---------cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 419 AR---------GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 419 a~---------~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
+. ...|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 22 13588999999999999999999999999999998 544444
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=2.9e-15 Score=159.17 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=127.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhh
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV 300 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~ 300 (715)
++++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+.++|+.+.......
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999888888776532 235589999999999999999999965 6899999998875432211
Q ss_pred -----h------H-HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCC
Q 005066 301 -----G------A-RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEG 359 (715)
Q Consensus 301 -----~------~-~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~ 359 (715)
. + ......|..+. +++|||||||.+.. .....|+..++... ...+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 0 0 01223454443 46999999998841 23445555555321 1245
Q ss_pred EEEEeecCCC-------CcccccccCCCCcccccccCCCCHHH----HHHHHHHHhhhhcc-----CCccc---HHHHHh
Q 005066 360 IIVIAATNFP-------ESLDKALVRPGRFDRHIVVPNPDVEG----RRQIMESHMSKVLK-----ADDVD---LMIIAR 420 (715)
Q Consensus 360 ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~v~~Pd~~e----R~~ILk~~l~~~~~-----~~dvd---l~~la~ 420 (715)
+.||++||.+ ..+++.|.. ||. .+.+..|+..+ ...++++++..... ...++ +..|..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8899999975 123444544 554 45555555444 44577777654311 11233 445666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005066 421 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 454 (715)
Q Consensus 421 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 454 (715)
....-+.++|.+++..+...+ ....|+.+|+
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l 245 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISEREL 245 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhh
Confidence 664457788889888877654 3356666665
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=1.3e-14 Score=174.35 Aligned_cols=203 Identities=23% Similarity=0.306 Sum_probs=137.0
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH--
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF-- 297 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~-- 297 (715)
+++|+|++++++.+...+...+..-. -..++..++||+||||||||++|++++..+ +.+|+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999888775321000 001122379999999999999999999999 8899999998876531
Q ss_pred ---hhh-----hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCE
Q 005066 298 ---VGV-----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGI 360 (715)
Q Consensus 298 ---vg~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~---------~~~~V 360 (715)
.|. +......+....+...++||||||||.+. ..+++.|+..|+.-. .-.++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ 702 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDFRNT 702 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEeccCCe
Confidence 111 11112334444455667999999999772 345677777776432 12468
Q ss_pred EEEeecCCC--------------------------CcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-----
Q 005066 361 IVIAATNFP--------------------------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK----- 409 (715)
Q Consensus 361 iVIaaTN~p--------------------------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~----- 409 (715)
+||+|||.. ..+.|.|+. ||+..+.|++|+.+++..|++.++.....
T Consensus 703 iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 703 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999972 134566665 99999999999999999999998874311
Q ss_pred --CCccc---HHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 005066 410 --ADDVD---LMIIARGTP--GFSGADLANLVNIAALKA 441 (715)
Q Consensus 410 --~~dvd---l~~la~~t~--G~sgadI~~lv~~A~~~A 441 (715)
...++ +..|+.... .++.++|.++++.+...+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 01122 344665443 567788888888776544
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.6e-15 Score=175.31 Aligned_cols=220 Identities=21% Similarity=0.191 Sum_probs=136.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee----ccchhhhHhh
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS----GSEFEEMFVG 299 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is----~s~~~~~~vg 299 (715)
..|+|++++|+.+.-.+.. ..+............++||+||||||||++|+++|+.++.+++... +..+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~-g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG-GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC-CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhC-CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 3477888777665321110 0000000011122337999999999999999999999987665432 2222211110
Q ss_pred h---hHH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEe
Q 005066 300 V---GAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIA 364 (715)
Q Consensus 300 ~---~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~-----------~~~~~ViVIa 364 (715)
. +.. .....+..| ..+|+||||||.+.. ...+.|+..|+.- ..+.++.||+
T Consensus 374 ~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp GGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccccccccccCCeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 0 000 001122233 347999999998732 1234455555431 1235688999
Q ss_pred ecCCCC-------------cccccccCCCCccccc-ccCCCCHHHHHHHHHHHhhhhcc---------------------
Q 005066 365 ATNFPE-------------SLDKALVRPGRFDRHI-VVPNPDVEGRRQIMESHMSKVLK--------------------- 409 (715)
Q Consensus 365 aTN~p~-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~~ILk~~l~~~~~--------------------- 409 (715)
|||++. .|+++|++ |||..+ ..+.|+.+ ...|+++.+.....
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~ 516 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK 516 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH
T ss_pred EcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH
Confidence 999886 89999998 998655 45777777 88888877653210
Q ss_pred -----CCcccHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 410 -----ADDVDLMIIARG--------------TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 410 -----~~dvdl~~la~~--------------t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
-.+.....|... ..+.|.+.+.++++.|..+|..+++..|+.+|+.+|+.-+
T Consensus 517 ~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 517 YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 001112223322 3578999999999999999999999999999999998754
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.3e-14 Score=151.56 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=133.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC-----CeEEeeccch
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----PFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-----~fi~is~s~~ 293 (715)
.+.+|++++|++++++.|...+. .+..|. +||+||||||||++++++|+.+.. .++.+++++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 46689999999999888887665 234454 999999999999999999998733 3666776553
Q ss_pred hhhHhhhhHHHHHHHHHHHH------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 294 EEMFVGVGARRVRDLFSAAK------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 294 ~~~~vg~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.. ...+++.+.... ...+.|++|||+|.+. ....+.|+..++.. ...+.+|.+||
T Consensus 88 ~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~~n 148 (340)
T 1sxj_C 88 RG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVLAN 148 (340)
T ss_dssp CS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEES
T ss_pred cc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEEec
Confidence 21 223343333322 1236899999999883 12345566666643 45667788899
Q ss_pred CCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005066 368 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 446 (715)
Q Consensus 368 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 446 (715)
.+..+.+++.+ |+. .+.|++++.++..+++...++..... .+.....++..+.| +.+.+.++++.+...+...+.
T Consensus 149 ~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~ 224 (340)
T 1sxj_C 149 YAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDE 224 (340)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSC
T ss_pred CccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCccc
Confidence 99999999987 876 78899999999999998888543221 12234456665543 333333333332222111122
Q ss_pred CccCHHHHHHHH
Q 005066 447 KAVTMADLEYAK 458 (715)
Q Consensus 447 ~~It~edl~~A~ 458 (715)
..|+.+++..++
T Consensus 225 ~~it~~~v~~~~ 236 (340)
T 1sxj_C 225 DEISDDVIYECC 236 (340)
T ss_dssp CCBCHHHHHHHT
T ss_pred ccccHHHHHHHh
Confidence 368888876653
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=7.1e-14 Score=149.70 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=125.8
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--------------
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 283 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~-------------- 283 (715)
..+.+|++++|++++++.|+..+. . ....|. ++|+||||||||++++++++++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 456789999999999887775441 1 234455 999999999999999999996521
Q ss_pred ---------------CeEEeeccchhhhHhhhhHHHHHHHHHHHH--------------hCCCeEEEEcCchhhcCCCCC
Q 005066 284 ---------------PFFSCSGSEFEEMFVGVGARRVRDLFSAAK--------------KRSPCIIFIDEIDAIGGSRNP 334 (715)
Q Consensus 284 ---------------~fi~is~s~~~~~~vg~~~~~vr~lF~~A~--------------~~~P~ILfIDEID~l~~~r~~ 334 (715)
+++.++.++... .....+++.+..+. ...|.||+|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 123333322110 00012444444432 2357799999999862
Q ss_pred CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-C-c
Q 005066 335 KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-D-D 412 (715)
Q Consensus 335 ~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~-~-d 412 (715)
....+.|+..++.. ..+..+|.+||.++.+.+.+.+ |+ ..+.|++|+.+++.++++..+++.... . +
T Consensus 148 ------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp ------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 22345555555543 3467888889999999999987 77 688999999999999999988654322 2 3
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005066 413 VDLMIIARGTPGFSGADLANLVNIAAL 439 (715)
Q Consensus 413 vdl~~la~~t~G~sgadI~~lv~~A~~ 439 (715)
-.+..++..+.| +.+++.++++.+..
T Consensus 217 ~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 217 DILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 346667777654 56666666665443
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=6.4e-13 Score=144.52 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=150.1
Q ss_pred CCCCccCCCcHHHHHHHHHHH-HHhcCchhHhhhCCCCCCeEEE--EcCCCCChHHHHHHHHHHh---------CCCeEE
Q 005066 220 NTKFSDVKGVDEAKQELEEIV-HYLRDPKRFTRLGGKLPKGVLL--VGPPGTGKTMLARAIAGEA---------GVPFFS 287 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv-~~L~~~~~~~~lg~~~pkgvLL--~GPPGTGKT~LAralA~el---------~~~fi~ 287 (715)
....++++|.++..+.|.+.+ ...... ....+..++| +||||+|||+|++.+++.+ +.++++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 334578999999888888776 542210 0034568999 9999999999999999876 567788
Q ss_pred eeccchhh------hHh---h-------hhH-HHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005066 288 CSGSEFEE------MFV---G-------VGA-RRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 349 (715)
Q Consensus 288 is~s~~~~------~~v---g-------~~~-~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 349 (715)
++|..... ... + ... .....+..... ...|.||+|||+|.+...+. .. ...+..++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~----~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-IA----AEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC----HHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc----hHHHHHHHH
Confidence 88743211 110 1 011 11222222222 35689999999999854211 01 233444444
Q ss_pred Hhhcccc-C--CCEEEEeecCCCC---ccc---ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccCCcc---cHHH
Q 005066 350 ELDGFKQ-N--EGIIVIAATNFPE---SLD---KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV---DLMI 417 (715)
Q Consensus 350 ~Ld~~~~-~--~~ViVIaaTN~p~---~LD---~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~~dv---dl~~ 417 (715)
.++.+.. . .++.||++||.++ .++ +.+.+ ||...+.+++++.++..+|++.++........+ .+..
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 4443321 2 6788888888665 344 55555 555559999999999999999887643222122 3455
Q ss_pred HHhcCC------CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 418 IARGTP------GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 418 la~~t~------G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
++..+. | +++.+.+++..|...|..++...++.+++..++....
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 677766 5 6788899999998888888888999999998887653
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.42 E-value=7e-13 Score=153.41 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=133.7
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC---eEEeeccchh
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEFE 294 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~---fi~is~s~~~ 294 (715)
.++..|++++|++.+++.+...+.. ...++|+||||||||++|+++++.+... .+.+.+....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 4567899999999998777765541 2489999999999999999999988432 2222111110
Q ss_pred --------------hhHh------------------------------------------hhhHHHHHHHHH--------
Q 005066 295 --------------EMFV------------------------------------------GVGARRVRDLFS-------- 310 (715)
Q Consensus 295 --------------~~~v------------------------------------------g~~~~~vr~lF~-------- 310 (715)
.... .........+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0000 000000111221
Q ss_pred ---------------HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-------------------cc
Q 005066 311 ---------------AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-------------------KQ 356 (715)
Q Consensus 311 ---------------~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~-------------------~~ 356 (715)
......+++|||||+|.+. . ...+.|+..|+.- ..
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------~---~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------L---KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------H---HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC--------H---HHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 0112346799999999872 1 2234444444311 11
Q ss_pred CCCEEEEeecCCC--CcccccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhhhhc---cCCccc---HHHHHh--
Q 005066 357 NEGIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMSKVL---KADDVD---LMIIAR-- 420 (715)
Q Consensus 357 ~~~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~~ILk~~l~~~~---~~~dvd---l~~la~-- 420 (715)
..++.||++||+. +.++++|++ ||+ ..+.++. + +.+....+++.+.+... ....++ +..|.+
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2368899999976 679999998 886 3444432 2 34455666655443322 112233 333333
Q ss_pred -cCCCC------CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005066 421 -GTPGF------SGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 460 (715)
Q Consensus 421 -~t~G~------sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 460 (715)
+..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 23553 78999999999999999899999999999999864
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=1.5e-13 Score=129.76 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=79.7
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhh
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG 301 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~ 301 (715)
+++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899999888887776532 234579999999999999999999987 78999 999887654
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 302 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 302 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
......|..+. +++|||||||.+.. .....|+..|.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~-----------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR-----------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH-----------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH-----------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 23445566553 46999999998841 223344444432 34467788888864
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.38 E-value=1.4e-13 Score=129.78 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=79.6
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHH
Q 005066 225 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 304 (715)
Q Consensus 225 dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~ 304 (715)
+++|.+++.+.+.+.+..+. ..+.+|||+||||||||++|++++...+ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58899999888888776532 2345799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 305 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 305 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
...+|..+. +++|||||+|.+.. ... ..|+..++.. ...++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~--------~~q---~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR--------NIQ---TGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH--------HHH---HHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH--------HHH---HHHHHHHHhC-CCCCEEEEEecCCC
Confidence 455565553 47999999998841 122 3344444432 24567888888854
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=6.4e-12 Score=134.82 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=112.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC------------------------eEEeeccchhhhHhhhhHHHHHHH
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDL 308 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~------------------------fi~is~s~~~~~~vg~~~~~vr~l 308 (715)
.++.|..+||+||||+|||++|+++|+.+..+ ++.++..+- -...+...++++
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l 96 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREV 96 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHH
Confidence 35677889999999999999999999988543 233332100 001234557777
Q ss_pred HHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCccc
Q 005066 309 FSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 384 (715)
Q Consensus 309 F~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 384 (715)
++.+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+.+++ |+.
T Consensus 97 ~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~- 160 (334)
T 1a5t_A 97 TEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR- 160 (334)
T ss_dssp HHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred HHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-
Confidence 777643 346899999999883 2346788888874 45678888899999999999998 774
Q ss_pred ccccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 005066 385 HIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNI 436 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~ 436 (715)
.+.|++|+.++..++++... ...+..+..++..+.| +.+.+.++++.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred eeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 78999999999999988775 1122234556666654 55555555543
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=7.3e-13 Score=166.38 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=110.0
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHH-hcC----------chhHhh------hC----------CCCCCe--EEEEcCCCC
Q 005066 218 ESNTKFSDVKGVDEAKQELEEIVHY-LRD----------PKRFTR------LG----------GKLPKG--VLLVGPPGT 268 (715)
Q Consensus 218 ~~~~~f~dv~G~d~~k~eL~eiv~~-L~~----------~~~~~~------lg----------~~~pkg--vLL~GPPGT 268 (715)
...++|+||.|.+++|+++.+.+.+ ++. ++.|.. .| +-+|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3568999999999999999988877 532 556655 23 336777 999999999
Q ss_pred ChHHHHHHHHHHh---CCCeEEeeccchh------------hhHhhh----hHHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 269 GKTMLARAIAGEA---GVPFFSCSGSEFE------------EMFVGV----GARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 269 GKT~LAralA~el---~~~fi~is~s~~~------------~~~vg~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
|||+||++++.+. |-|.+.++..... +++++. +++.++.+|..|+...||+||+||+|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 5676666665533 344556 78899999999999999999999999998
Q ss_pred CCCC------CCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 330 GSRN------PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 330 ~~r~------~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
+.+. ..+.....+.++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 7631 112244566799999999998888888888 67755
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.32 E-value=5.7e-12 Score=106.98 Aligned_cols=75 Identities=32% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005066 389 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 463 (715)
Q Consensus 389 ~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~ 463 (715)
|+||.++|.+||+.|+++.....++|+..|+..|.||||+||.++|++|++.|.+++...|+++||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999988889999999999999999999999999999999999999999999999999865
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=9.3e-12 Score=108.01 Aligned_cols=78 Identities=29% Similarity=0.359 Sum_probs=73.6
Q ss_pred ccCCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005066 387 VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 464 (715)
Q Consensus 387 ~v~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g 464 (715)
.-.+||.++|.+||+.++++.....++|+..||..|.||||+||.++|++|++.|.++....|+++||..|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 457899999999999999999888899999999999999999999999999999999999999999999999998764
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.26 E-value=1e-11 Score=108.20 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccccccc
Q 005066 392 DVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSA 470 (715)
Q Consensus 392 d~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~~~~~~ 470 (715)
|.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|++++.+|.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 5689999999999999888899999999999999999999999999999999999999999999999999999877654
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=3e-11 Score=128.48 Aligned_cols=142 Identities=11% Similarity=0.139 Sum_probs=104.9
Q ss_pred CcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh------CCCeEEeeccchhhhHhhhh
Q 005066 228 GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------GVPFFSCSGSEFEEMFVGVG 301 (715)
Q Consensus 228 G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el------~~~fi~is~s~~~~~~vg~~ 301 (715)
|++++.+.|+..+.. .+ +..+||+||||+|||++|+++|+.+ ...|+.++++.- ..+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 556666666665541 22 3489999999999999999999874 346777775420 123
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccccc
Q 005066 302 ARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 377 (715)
Q Consensus 302 ~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLl 377 (715)
...++++++.+... ...|+||||+|.+. ....|.|+..|+. +.+++++|.+||.++.+.|+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 45678888877532 24799999999883 3346788888884 4567888888888999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 378 RPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 378 RpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
+ | .+.|++|+.++..++++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8 7 88999999999999888876
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=5e-11 Score=155.68 Aligned_cols=139 Identities=22% Similarity=0.326 Sum_probs=98.0
Q ss_pred CCeEEEEcCCCCChHHHHHHH-HHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHH---------------hCCCeEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAI-AGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAK---------------KRSPCII 320 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAral-A~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~---------------~~~P~IL 320 (715)
.+++||+||||||||++|+.+ +...+.+++.++++...+. ..+...+...- ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 469999999999999999554 5444788888888765432 23334443320 1235899
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC--------CCEEEEeecCCCC-----cccccccCCCCcccccc
Q 005066 321 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN--------EGIIVIAATNFPE-----SLDKALVRPGRFDRHIV 387 (715)
Q Consensus 321 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~--------~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~I~ 387 (715)
||||||.....+ .+.+.....+.+++. ..++... .++.+|||||+|. .|+++|+| || ..|.
T Consensus 1341 FiDEinmp~~d~--yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDK--YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCS--SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eecccccccccc--cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999999643222 222334556666653 3333221 3589999999994 79999999 89 6899
Q ss_pred cCCCCHHHHHHHHHHHhhhh
Q 005066 388 VPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 388 v~~Pd~~eR~~ILk~~l~~~ 407 (715)
++.|+.+++..|+..+++..
T Consensus 1415 i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998755
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.15 E-value=8.6e-11 Score=128.80 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=126.0
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh-
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV- 298 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v- 298 (715)
|.+++|.++..+++.+.+..+... ...|||+|++|||||++|+++.... +.||+.++|+.+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 567888888777777776654332 3468999999999999999998876 47999999998755321
Q ss_pred ----hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc-------cCC
Q 005066 299 ----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK-------QNE 358 (715)
Q Consensus 299 ----g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~-------~~~ 358 (715)
|... ......|..|. .++||||||+.+. ... ...|+..|+. +. ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~--------~~~---q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELS--------LEA---QAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCC--------HHH---HHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCC--------HHH---HHHHHHHHhcCcEEeCCCCceeec
Confidence 1100 01123444443 3699999999883 223 3344444432 11 123
Q ss_pred CEEEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHHH----HHHHHHhhhhc----cC-Cccc---HHHHH
Q 005066 359 GIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRR----QIMESHMSKVL----KA-DDVD---LMIIA 419 (715)
Q Consensus 359 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~----~ILk~~l~~~~----~~-~dvd---l~~la 419 (715)
++.||++||..- . .+.+.|+|.. .+.+..|+..+|. .++++++++.. .. ..++ +..+.
T Consensus 272 ~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 578999999642 1 1222233322 3456667766653 35566665431 11 1233 34455
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005066 420 RGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 457 (715)
Q Consensus 420 ~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 457 (715)
.+..--+.++|+|+++.|+..+ ....|+.+|+...
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 5554456689999999887765 3468899888644
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=1.6e-10 Score=112.06 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=81.7
Q ss_pred CCCCCccCCCc-HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccch
Q 005066 219 SNTKFSDVKGV-DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 293 (715)
Q Consensus 219 ~~~~f~dv~G~-d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~ 293 (715)
.+.+|+++++. +..++.+..+..++.+. ....+.+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45689998873 34444444444444332 22335689999999999999999999887 677788888777
Q ss_pred hhhHhhhhHH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC
Q 005066 294 EEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 370 (715)
Q Consensus 294 ~~~~vg~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~ 370 (715)
...+...... ....++... ..|.+|+|||++..+ ...+....+..++.... ..+..+|.+||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER------LSDWQRELISYIITYRY----NNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC------CCHHHHHHHHHHHHHHH----HTTCEEEEECCCCS
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCCCh
Confidence 6543321110 001222222 357899999998542 22344445555554432 13456777787653
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.05 E-value=3.3e-10 Score=97.17 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccc
Q 005066 392 DVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGS 465 (715)
Q Consensus 392 d~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~ 465 (715)
|.++|.+||+.|+++.....++|+..|+..|.||||+||.++|++|++.|.+++...|+++||..|+.++.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999988888999999999999999999999999999999999989999999999999987653
No 93
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.97 E-value=2.5e-10 Score=97.93 Aligned_cols=73 Identities=26% Similarity=0.252 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccc
Q 005066 394 EGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSE 466 (715)
Q Consensus 394 ~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~~g~~ 466 (715)
++|.+||+.|+++.....++|+..|+..|.||||+||.++|++|++.|.+++...|+++||..|+.++..|..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4689999999999888889999999999999999999999999999999999999999999999999876643
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.97 E-value=2e-09 Score=106.02 Aligned_cols=103 Identities=24% Similarity=0.270 Sum_probs=65.0
Q ss_pred CCCCccCCCcH-HHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh
Q 005066 220 NTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 295 (715)
Q Consensus 220 ~~~f~dv~G~d-~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~ 295 (715)
+.+|+++++.+ ..++.+..+..++.+.. ....|++++|+||||||||++|+++++.+ +.+++.+++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 56899999866 33333343333333211 01134799999999999999999999988 78899899887765
Q ss_pred hHhhhh-HHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005066 296 MFVGVG-ARRVRDLFSAAKKRSPCIIFIDEIDAIG 329 (715)
Q Consensus 296 ~~vg~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~ 329 (715)
.+.... ...+..++..... +.+|||||++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 433211 0112233333333 3599999997653
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.94 E-value=1.8e-09 Score=120.15 Aligned_cols=210 Identities=17% Similarity=0.135 Sum_probs=119.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHH-HHHhCCCeEEeeccchhhhHhhhhHH-
Q 005066 226 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAI-AGEAGVPFFSCSGSEFEEMFVGVGAR- 303 (715)
Q Consensus 226 v~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAral-A~el~~~fi~is~s~~~~~~vg~~~~- 303 (715)
|.|++.+|..|.-.+- ....+ ..-.-+|||.|+||| ||++|+++ +..+....+ +++.. ....+....
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCC--CCccCceEEE
Confidence 7888887766653221 11000 111237999999999 99999999 665543332 22210 000010000
Q ss_pred -------HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-------cccCCCEEEEeecCCC
Q 005066 304 -------RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-------FKQNEGIIVIAATNFP 369 (715)
Q Consensus 304 -------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~-------~~~~~~ViVIaaTN~p 369 (715)
.-...+..|. ..|+|||||+.+. ..++..|+..|+. ..-+..+.||||+|..
T Consensus 284 r~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLAD---GGILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp EESSSEEEEECHHHHTT---TSEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred EcCCCcccCCCeeEEcC---CCeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 0011222332 3599999999873 3334455555542 2234578999999987
Q ss_pred C-----------cccccccCCCCccccc-ccCCCCHHHHH---------HHHHHH---hhhhccCCccc---------H-
Q 005066 370 E-----------SLDKALVRPGRFDRHI-VVPNPDVEGRR---------QIMESH---MSKVLKADDVD---------L- 415 (715)
Q Consensus 370 ~-----------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~---------~ILk~~---l~~~~~~~dvd---------l- 415 (715)
+ .|+++++. |||..+ .++.|+.+.-. +.++.+ .+.......++ +
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 5 67888887 998755 44666544311 122222 12010111111 0
Q ss_pred HHH--H--------hcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 416 MII--A--------RGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 416 ~~l--a--------~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
..+ . ....|.|++.+..+++.|..+|..+++..|+.+|+..|+.-+.
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 000 0 0356899999999999999999999999999999999987553
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.89 E-value=3.7e-09 Score=115.12 Aligned_cols=191 Identities=22% Similarity=0.315 Sum_probs=113.4
Q ss_pred ccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCC--CeEEeeccchhhhHh---
Q 005066 224 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEEMFV--- 298 (715)
Q Consensus 224 ~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~--~fi~is~s~~~~~~v--- 298 (715)
.+++|.+....++.+.+..+... ...+|++|++||||+++|+++....+. +|+.++|+.+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46889988888887777654322 236999999999999999999887754 399999997654311
Q ss_pred --hhhH-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------CCCE
Q 005066 299 --GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------NEGI 360 (715)
Q Consensus 299 --g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~--~~~-------~~~V 360 (715)
|... ......|..|. .++||||||+.+. ......|+..|+. +.. .-++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 1100 01123454443 3599999999883 2233444444432 111 1257
Q ss_pred EEEeecCCCCcccccccCCCCccc-------ccccCCCCHHHH----HHHHHHHhhhhcc----C-Cccc---HHHHHhc
Q 005066 361 IVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGR----RQIMESHMSKVLK----A-DDVD---LMIIARG 421 (715)
Q Consensus 361 iVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR----~~ILk~~l~~~~~----~-~dvd---l~~la~~ 421 (715)
.+|++||.. +. .+...|+|.. .+.+..|...+| ..++++++.+... . ..++ +..|..+
T Consensus 265 rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 265 RVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 789999853 11 1222234332 344445555544 4566666654321 1 1233 4455666
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005066 422 TPGFSGADLANLVNIAALKA 441 (715)
Q Consensus 422 t~G~sgadI~~lv~~A~~~A 441 (715)
...-+.++|+|++..|+..+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 54446788888888776543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=1.7e-07 Score=99.07 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=113.1
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh------
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE------ 294 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~------ 294 (715)
.....++|.++..+.|.+ + .. ..++|+||+|+|||+|++.+++.++.+++++++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 345778999877666654 3 22 3899999999999999999999998778888776430
Q ss_pred -hhHhhh---------------------------------------hHHHHHHHHHHHHhC--CCeEEEEcCchhhcCCC
Q 005066 295 -EMFVGV---------------------------------------GARRVRDLFSAAKKR--SPCIIFIDEIDAIGGSR 332 (715)
Q Consensus 295 -~~~vg~---------------------------------------~~~~vr~lF~~A~~~--~P~ILfIDEID~l~~~r 332 (715)
..+... ....+..++...... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 000000 011234455444432 38999999999885421
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCccccc-----cc--CCCCcccccccCCCCHHHHHHHHHHHhh
Q 005066 333 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA-----LV--RPGRFDRHIVVPNPDVEGRRQIMESHMS 405 (715)
Q Consensus 333 ~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~a-----Ll--RpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 405 (715)
... ....+..+... ..++.+|.+++....+... .. -.+|+...+.+++.+.++..+++...+.
T Consensus 154 ~~~----~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN----LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC----CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh----HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 12223333221 1356666666543222111 00 1246666889999999999999998775
Q ss_pred hhccCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 005066 406 KVLKADDVDLMIIARGTPGFSGADLANLVNI 436 (715)
Q Consensus 406 ~~~~~~dvdl~~la~~t~G~sgadI~~lv~~ 436 (715)
......+ +...+...+.| .+.-+..++..
T Consensus 224 ~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 4322222 23667777776 45566665543
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=1.3e-09 Score=116.17 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCC--eEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 334 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~--fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~ 334 (715)
...++|+||||||||+||.+++...|.+ |+.+...+..+.+.......+..+++...... +||||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3457999999999999999999876544 55552233222222333444555666665544 9999999998543321
Q ss_pred -CchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccc
Q 005066 335 -KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 376 (715)
Q Consensus 335 -~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aL 376 (715)
.......+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 111111344566677776665666788888888 55566554
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=5.3e-09 Score=99.43 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR 332 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 332 (715)
....++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 34579999999999999999999988 777888888776543 11235789999999875321
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC-CCCccc--ccccCCCCccccccc
Q 005066 333 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN-FPESLD--KALVRPGRFDRHIVV 388 (715)
Q Consensus 333 ~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN-~p~~LD--~aLlRpgRFd~~I~v 388 (715)
. ...+..++..+. ..+..++|.+|| .|+.+. +.|.+ ||...+.+
T Consensus 99 -----~--~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 -----E--QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -----H--HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -----H--HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1 333444444332 222332344555 455443 56665 66544433
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.74 E-value=3.5e-09 Score=112.47 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCCCccCCCcH-HHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchh
Q 005066 220 NTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFE 294 (715)
Q Consensus 220 ~~~f~dv~G~d-~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~ 294 (715)
+.+|+++.+.+ .....+..+..++.+. +...+.+++|+||||||||+||++++.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899998754 3222333333333321 11135799999999999999999999865 4888888888776
Q ss_pred hhHhhhh-HHHHHHHHHHHHhCCCeEEEEcCchhh
Q 005066 295 EMFVGVG-ARRVRDLFSAAKKRSPCIIFIDEIDAI 328 (715)
Q Consensus 295 ~~~vg~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 328 (715)
..+.... ...+...+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5443211 111122222222 3469999999754
No 101
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.65 E-value=2.8e-08 Score=108.54 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=79.5
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcC-
Q 005066 252 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGG- 330 (715)
Q Consensus 252 lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~- 330 (715)
++...+..++|+||||+|||+|++++++..+..++.+....-...+ .+. .....+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHH------HhcchhHHHHHHHHHHHHH
Confidence 3677778899999999999999999999988776654433211010 011 122346789999998864
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCC
Q 005066 331 SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 390 (715)
Q Consensus 331 ~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 390 (715)
.+.-....+.. ....+...++| .+.|+++||+++.+ +++++|+|++..+....
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22111111111 22334444554 45678889999999 79999999998887755
No 102
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.64 E-value=9.2e-07 Score=93.19 Aligned_cols=189 Identities=17% Similarity=0.134 Sum_probs=109.5
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh------
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE------ 294 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~------ 294 (715)
..-..++|.++..+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 3446789999888888776542 1 4899999999999999999999986 6666654331
Q ss_pred ------hhHh--------------------hhh----HHHHHHHHHH----HHhCCCeEEEEcCchhhcCCCCCCchHHH
Q 005066 295 ------EMFV--------------------GVG----ARRVRDLFSA----AKKRSPCIIFIDEIDAIGGSRNPKDQQYM 340 (715)
Q Consensus 295 ------~~~v--------------------g~~----~~~vr~lF~~----A~~~~P~ILfIDEID~l~~~r~~~~~~~~ 340 (715)
..+. +.. ...+..++.. +....|.+|+|||++.+...... .....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~~~~ 151 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GGKEL 151 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TTHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-chhhH
Confidence 1000 000 0112233322 22224899999999988531000 11122
Q ss_pred HHHHHHHHHHhhccccCCCEEEEeecCCCCccc---------ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccC-
Q 005066 341 KMTLNQLLVELDGFKQNEGIIVIAATNFPESLD---------KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA- 410 (715)
Q Consensus 341 ~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~~~- 410 (715)
...+..++ +. ..++.+|.++.....++ ..+. ||+...+.+++.+.++..+++...+......
T Consensus 152 ~~~L~~~~---~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 152 LALFAYAY---DS---LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp HHHHHHHH---HH---CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHH---Hh---cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 22333332 22 13566666554322111 1122 4666678999999999999998876543221
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHH
Q 005066 411 DDVDLMIIARGTPGFSGADLANLVN 435 (715)
Q Consensus 411 ~dvdl~~la~~t~G~sgadI~~lv~ 435 (715)
.+-....+...+.| .+.-+..++.
T Consensus 224 ~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 224 PENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 22234566677766 4555655544
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.59 E-value=2.8e-08 Score=99.17 Aligned_cols=129 Identities=17% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH--------hC-CCeEEeeccchhhhHh----------hhhHH--HHHHHHHHH--H
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE--------AG-VPFFSCSGSEFEEMFV----------GVGAR--RVRDLFSAA--K 313 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e--------l~-~~fi~is~s~~~~~~v----------g~~~~--~vr~lF~~A--~ 313 (715)
+--.|++|+||||||++|..++.. .| .+++..++.++..... ..... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999999887544 34 7777777665532211 00000 112233321 2
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCH
Q 005066 314 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 393 (715)
Q Consensus 314 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~ 393 (715)
...++||+|||++.+.+.+...... ..++..+.. ....++-||.+|+.++.|+.+++. |++.++++++|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3447899999999997654221111 124444443 234567778888889999999886 9999888877654
Q ss_pred H
Q 005066 394 E 394 (715)
Q Consensus 394 ~ 394 (715)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.57 E-value=5.2e-07 Score=118.46 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 336 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 336 (715)
..|+++.||+|||||.+++++|+.+|.+++.++|++-.+. ..+..+|..+... ++++++|||+.+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLD------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcC-------
Confidence 3579999999999999999999999999999999875432 3345666665443 4799999999773
Q ss_pred hHHHHHHHHHHH----HHhhc-----------cccCCCEEEEeecCC----CCcccccccCCCCcccccccCCCCHHHHH
Q 005066 337 QQYMKMTLNQLL----VELDG-----------FKQNEGIIVIAATNF----PESLDKALVRPGRFDRHIVVPNPDVEGRR 397 (715)
Q Consensus 337 ~~~~~~~l~~LL----~~Ld~-----------~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 397 (715)
......+.+.+ ..+.. +.-+..+.|++|.|. ...|+++|.+ || +.|.+..||.+...
T Consensus 711 -~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 711 -EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHH
Confidence 22333333332 22211 122456778899993 3468899987 88 68999999999988
Q ss_pred HHHH
Q 005066 398 QIME 401 (715)
Q Consensus 398 ~ILk 401 (715)
+|+-
T Consensus 787 ei~l 790 (2695)
T 4akg_A 787 EMIL 790 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.54 E-value=4.7e-07 Score=119.62 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=92.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEeeccchhhhHhhhhHHHHHHHHHHH----H------------hCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----K------------KRSPCI 319 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A----~------------~~~P~I 319 (715)
.++|||+||||||||++++.+...+ +.+++.++++.-.+ ...+...+..- + ....+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3579999999999998776654444 66788888876443 22333333321 0 122379
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------ccCCCEEEEeecCCCC-----cccccccCCCCccccc
Q 005066 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--------KQNEGIIVIAATNFPE-----SLDKALVRPGRFDRHI 386 (715)
Q Consensus 320 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~I 386 (715)
+||||++.- .....+.+.....+.+++.. .++ ..-.++.+|+|+|.|. .|+++|+| ||. .+
T Consensus 1378 lFiDDiNmp--~~D~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi 1451 (3245)
T 3vkg_A 1378 VFCDEINLP--STDKYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-IL 1451 (3245)
T ss_dssp EEETTTTCC--CCCTTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EE
T ss_pred EEecccCCC--CccccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EE
Confidence 999999853 22222223344556666543 122 1224688999999883 58999998 886 68
Q ss_pred ccCCCCHHHHHHHHHHHhhhh
Q 005066 387 VVPNPDVEGRRQIMESHMSKV 407 (715)
Q Consensus 387 ~v~~Pd~~eR~~ILk~~l~~~ 407 (715)
.++.|+.+....|+..++...
T Consensus 1452 ~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988776543
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=7e-07 Score=114.00 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=80.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhh----hHhh------------hhHHHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE----MFVG------------VGARRVRDLFSAAKK 314 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~----~~vg------------~~~~~vr~lF~~A~~ 314 (715)
...+++++|+||||||||+||.+++.++ |....+++...... ...| ..+..++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5667889999999999999999998876 55666666553321 1112 234566777778888
Q ss_pred CCCeEEEEcCchhhcCCC----CCCc-hH-HHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 315 RSPCIIFIDEIDAIGGSR----NPKD-QQ-YMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~~r----~~~~-~~-~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+|++|||||++.+.+.+ ...+ .. ...+.+.++|.+|.++....+++||.+.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 999999999999887531 1111 11 1356778888888888888888777654
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.29 E-value=6.2e-07 Score=89.79 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFF 286 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi 286 (715)
.+++||+||||||||++|.++|+.+....+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 358999999999999999999999865543
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.20 E-value=2.8e-06 Score=94.79 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=97.4
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEee---------cC---CCCcccccccCCCCccc
Q 005066 317 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA---------TN---FPESLDKALVRPGRFDR 384 (715)
Q Consensus 317 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaa---------TN---~p~~LD~aLlRpgRFd~ 384 (715)
|.|+||||+|.+. ....+.|+..|+... .+++|+++ |+ .++.|++.+++ ||..
T Consensus 296 ~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~ 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI 360 (456)
T ss_dssp ECEEEEESGGGCB-----------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--hcce
Confidence 4699999999883 456788888888543 33555455 33 26678888987 9975
Q ss_pred ccccCCCCHHHHHHHHHHHhhhhccC-CcccHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005066 385 HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGT-PGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 462 (715)
Q Consensus 385 ~I~v~~Pd~~eR~~ILk~~l~~~~~~-~dvdl~~la~~t-~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i~ 462 (715)
+.|++|+.++..+||+..+...... .+-.+..++... .| +++...++++.|...|..+++..|+.+|+..|+..++
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 6999999999999999988643321 122244566655 44 7888899999999999999999999999999987543
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.07 E-value=2.3e-05 Score=83.49 Aligned_cols=178 Identities=16% Similarity=0.092 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CC-CeEEeeccchhhhHhhhhHHHHHHHHHHHH----hCCCeEEEEcCch
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GV-PFFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEID 326 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~-~fi~is~s~~~~~~vg~~~~~vr~lF~~A~----~~~P~ILfIDEID 326 (715)
+.+..+||+||+|+||+..++.++..+ +. ++..+.... ...++++++.+. .....|++|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456689999999999999999998866 32 322221110 122344444432 2345799999999
Q ss_pred h-hcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC------CcccccccCCCCcccccccCCCCHHHHHHH
Q 005066 327 A-IGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP------ESLDKALVRPGRFDRHIVVPNPDVEGRRQI 399 (715)
Q Consensus 327 ~-l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~I 399 (715)
. +.. ...+.|+..++. ..+++++|.+++.+ ..+-+++.+ |. ..+.+.+++.++....
T Consensus 87 ~kl~~-----------~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 87 NGPNA-----------AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp SCCCT-----------THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CCCCh-----------HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 7 631 134566666664 23444555444433 345667665 54 3678889999999999
Q ss_pred HHHHhhhhccCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005066 400 MESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 461 (715)
Q Consensus 400 Lk~~l~~~~~~~-dvdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~i 461 (715)
++..++.....- +-.+..|+..+.| +.+++.+.++.....+ +...||.+|+...+...
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 888887653321 2224556766654 5555555555544432 44589999998876543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.02 E-value=1.4e-05 Score=105.98 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=89.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchhhhHhhhhHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 337 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~~~~vg~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 337 (715)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+.. ..+..++|||+.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcCC--------
Confidence 467899999999999999999999999999999875432 234455555533 24688999999872
Q ss_pred HHHHHHHHHHHHH----h---------h-c--cccCCCEEEEeecCC----CCcccccccCCCCcccccccCCCCHHHHH
Q 005066 338 QYMKMTLNQLLVE----L---------D-G--FKQNEGIIVIAATNF----PESLDKALVRPGRFDRHIVVPNPDVEGRR 397 (715)
Q Consensus 338 ~~~~~~l~~LL~~----L---------d-~--~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 397 (715)
.....++.+.+.. + + | +.-+.++.|++|+|. ...|+++|.. || +.|.++.||.+...
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 2222333332221 1 1 1 223456788999994 3478899987 77 57999999999988
Q ss_pred HHHH
Q 005066 398 QIME 401 (715)
Q Consensus 398 ~ILk 401 (715)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.99 E-value=7.4e-06 Score=85.18 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~ 283 (715)
.++++|+||||||||++|++||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 347999999999999999999997654
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.94 E-value=3.3e-05 Score=75.29 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFF 286 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi 286 (715)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999999876554
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.88 E-value=3.9e-05 Score=75.88 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
.....++|+||||+|||+|++.++..+ +.+++.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 334468999999999999999999754 5566666543
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=3.4e-05 Score=77.21 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch--hh----h--Hhhh---------------hH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF--EE----M--FVGV---------------GA 302 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~--~~----~--~vg~---------------~~ 302 (715)
....-++|+||||+|||+|++.++... +...++++.... .. . ..+. ..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 334458999999999999999999852 456777776541 11 0 0010 00
Q ss_pred ----HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 303 ----RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 303 ----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
..+..+........|.+|+|||+..+.....+. ......+.+..++..+..+....++.||.++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 112223344455789999999999886432111 1011111233444333333333456666666543
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=4.6e-05 Score=75.04 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
...-++|+||||+|||+|++.++...+.+.++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3345899999999999999999986677888887654
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.78 E-value=9.5e-05 Score=80.34 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----hhh-----------hHHHHHHHHH-HHHhC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV-----------GARRVRDLFS-AAKKR 315 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----vg~-----------~~~~vr~lF~-~A~~~ 315 (715)
.....++|+||||+|||+||..++..+ +.++++++...-.... .|. ....+..... ..+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344468999999999999999998765 6778888765422211 111 1122222222 23346
Q ss_pred CCeEEEEcCchhhcCCCC-CC--chH---HHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 316 SPCIIFIDEIDAIGGSRN-PK--DQQ---YMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~-~~--~~~---~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.+++|+||.+..+..... .. ... ...+.+.+++..|..+....++.||.+.
T Consensus 152 ~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 789999999999974221 11 000 1223455666666555555667776653
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.71 E-value=6.6e-05 Score=80.63 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=63.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch-h-hh---H---hhh----------------hH---
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-E-EM---F---VGV----------------GA--- 302 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~-~-~~---~---vg~----------------~~--- 302 (715)
-++|+||||+|||+|+..++..+ +.+.++++.... . +. + .|. ..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 48899999999999999999873 456777776542 1 10 0 010 01
Q ss_pred HHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 303 RRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 303 ~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
..+..+....+. ..+.+|+||.+..+...... +........+.+++..|..+....++.||.++.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 112222334445 67899999999998642111 111112233555555555554555666666544
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=6e-05 Score=80.20 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch--hhh---H---hhh----------------h
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF--EEM---F---VGV----------------G 301 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~--~~~---~---vg~----------------~ 301 (715)
....-++|+||||+|||+|+..++..+ +.+.++++...- .+. + .|. .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 334458999999999999999999875 556778876652 110 0 010 0
Q ss_pred H---HHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 302 A---RRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 302 ~---~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
. ..+..+....+. ..+.+|+||.+..+...... +........+.+++..|..+....++.||.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 1 112233334445 67899999999988632111 11112223455666666555444566666653
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=9.7e-05 Score=79.96 Aligned_cols=107 Identities=20% Similarity=0.165 Sum_probs=64.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----Hhh------------hhHHHHHHHHHHHHhCCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVG------------VGARRVRDLFSAAKKRSPCI 319 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~----~vg------------~~~~~vr~lF~~A~~~~P~I 319 (715)
-++|+||||+|||+|+..++..+ +.++++++....... -.| .....+..+....+...+.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 48899999999999999998875 667777776542211 011 01112222222234467899
Q ss_pred EEEcCchhhcCC-C---CCCch--HHHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 320 IFIDEIDAIGGS-R---NPKDQ--QYMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 320 LfIDEID~l~~~-r---~~~~~--~~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
++||.+..+.+. . ..+.. ....+.+.+++..|..+....++.||.+
T Consensus 143 vVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 143 IVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred EEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999888641 1 11111 1234456666666666656666666665
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.67 E-value=0.0001 Score=79.53 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----Hhhh------------hHHHHHHHHHHHHhCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVGV------------GARRVRDLFSAAKKRSP 317 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~----~vg~------------~~~~vr~lF~~A~~~~P 317 (715)
..-++|+||||+|||+|+..++..+ +.+.++++...-... ..|. ....+..+...++...|
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3459999999999999999998765 567777766532211 1110 11112222223345679
Q ss_pred eEEEEcCchhhcC
Q 005066 318 CIIFIDEIDAIGG 330 (715)
Q Consensus 318 ~ILfIDEID~l~~ 330 (715)
.+|+||++..+..
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 9999999999863
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.65 E-value=0.0001 Score=94.39 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=77.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----hhh--------hHHHHHHHHHHHHh----
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV--------GARRVRDLFSAAKK---- 314 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----vg~--------~~~~vr~lF~~A~~---- 314 (715)
..+...++|+|+||+|||+||..+|..+ +.+++++++.+..... .|. .+..+..++..++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4455679999999999999999999877 5579999887654443 121 11124444444433
Q ss_pred CCCeEEEEcCchhhcC-C----C-CCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 315 RSPCIIFIDEIDAIGG-S----R-NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~-~----r-~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
..|++||||.|+.+.. . + ....+....+.+.+++..|..+....++.||++..-
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999875 1 1 111112223447888888888877788888877653
No 122
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.65 E-value=0.00055 Score=78.00 Aligned_cols=171 Identities=13% Similarity=0.080 Sum_probs=92.8
Q ss_pred CccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH-------hCCCeEEeeccch--
Q 005066 223 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE-------AGVPFFSCSGSEF-- 293 (715)
Q Consensus 223 f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e-------l~~~fi~is~s~~-- 293 (715)
...++|.+...+.|.+.+.. . ...++-|+|+||+|+|||+||+.+++. .....+.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSK---L-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTT---S-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CCeecccHHHHHHHHHHHhc---c-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 35689999887777765432 1 112446899999999999999999643 2122344433322
Q ss_pred ---hhhHh------h----------hhHHHHHHHHHH-HHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005066 294 ---EEMFV------G----------VGARRVRDLFSA-AKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 352 (715)
Q Consensus 294 ---~~~~v------g----------~~~~~vr~lF~~-A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld 352 (715)
...+. + .....+...+.. ... ..|.+|+||+++.. . .+ +
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~---------~--------~l---~ 252 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS---------W--------VL---K 252 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH---------H--------HH---H
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH---------H--------HH---H
Confidence 11110 0 001112222222 222 36899999999742 0 11 2
Q ss_pred ccccCCCEEEEeecCCCCcccccccCCCCccccccc---CCCCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHH
Q 005066 353 GFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVV---PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGAD 429 (715)
Q Consensus 353 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v---~~Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgad 429 (715)
.+ ..+..||.||........ . . + ..+.+ ...+.++-.++|..++........-....|++.+.|+ +--
T Consensus 253 ~l--~~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLa 323 (591)
T 1z6t_A 253 AF--DSQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLV 323 (591)
T ss_dssp TT--CSSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHH
T ss_pred Hh--cCCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHH
Confidence 22 345567777765442211 1 1 1 12233 4678888888988877542111123356788888764 544
Q ss_pred HHH
Q 005066 430 LAN 432 (715)
Q Consensus 430 I~~ 432 (715)
|..
T Consensus 324 l~~ 326 (591)
T 1z6t_A 324 VSL 326 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.60 E-value=0.00013 Score=69.65 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
|+-|+|+|+||+||||+++.|+..++.+|+.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 45799999999999999999999999999887765443
No 124
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.58 E-value=0.00015 Score=80.83 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=37.5
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 215 PSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 215 ~~~~~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+....+.+|+++- +++++.+..++.++.+.+ ..++|.|+||||||+++.+++..+
T Consensus 15 ~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 15 VPRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3335677888873 566666776666654421 279999999999999999998877
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.55 E-value=0.00028 Score=70.75 Aligned_cols=113 Identities=25% Similarity=0.257 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHH--HH--hCCCeEEeeccchhhhH------hhh-----------------------
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIA--GE--AGVPFFSCSGSEFEEMF------VGV----------------------- 300 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA--~e--l~~~fi~is~s~~~~~~------vg~----------------------- 300 (715)
.....-+.|.||+|+|||||++.++ .. .+...+.++........ ++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3344468999999999999999998 33 34555555443221110 000
Q ss_pred -------------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecC
Q 005066 301 -------------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 367 (715)
Q Consensus 301 -------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN 367 (715)
.......+........|.+|+|||+..+.... .+.......+..++..+. . .++.||.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d~~~~~~~l~~l~~~l~---~-~g~tii~vtH 180 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EEERKIREVLLKLNTILL---E-MGVTTILTTE 180 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SSGGGHHHHHHHHHHHHH---H-HCCEEEEEEC
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CCHHHHHHHHHHHHHHHH---H-CCCeEEEEEC
Confidence 01112233333455789999999998775311 122234444566665553 2 3566777777
Q ss_pred CCCcc
Q 005066 368 FPESL 372 (715)
Q Consensus 368 ~p~~L 372 (715)
..+..
T Consensus 181 ~~~~~ 185 (251)
T 2ehv_A 181 APDPQ 185 (251)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 65544
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=0.00012 Score=79.36 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----hhh-----------hHHHHHHHHHH-HHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV-----------GARRVRDLFSA-AKK 314 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----vg~-----------~~~~vr~lF~~-A~~ 314 (715)
......++|+||||+|||+||..++..+ +.++++++...-.+.. .|. ....+..++.. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3444569999999999999999998765 6778888774322110 110 11223333332 245
Q ss_pred CCCeEEEEcCchhhcC
Q 005066 315 RSPCIIFIDEIDAIGG 330 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~ 330 (715)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999998864
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.51 E-value=0.00014 Score=72.06 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||+|+|||+|++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3348899999999999999999854
No 128
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.0014 Score=80.55 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=97.7
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---C----CCeEEeeccchh
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---G----VPFFSCSGSEFE 294 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~----~~fi~is~s~~~ 294 (715)
...+++|.++..++|.+.+..- ...++-|.|+|++|+|||+||+.+++.. . ..++.++.+...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 4467999998877777655311 1224468899999999999999998652 1 123344433311
Q ss_pred h-----hH------hh----------hhHHHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh
Q 005066 295 E-----MF------VG----------VGARRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL 351 (715)
Q Consensus 295 ~-----~~------vg----------~~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~L 351 (715)
. .+ .+ .....+...+..... ..+.+|+||+++... .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HH
Confidence 0 00 00 011222333333222 337899999998430 12
Q ss_pred hccccCCCEEEEeecCCCCcccccccCCCCcccccccCC-CCHHHHHHHHHHHhhhhccCCcccHHHHHhcCCCCCHHHH
Q 005066 352 DGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN-PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADL 430 (715)
Q Consensus 352 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~-Pd~~eR~~ILk~~l~~~~~~~dvdl~~la~~t~G~sgadI 430 (715)
+.+ ..+..||.||..+...... . .....+.+++ .+.++-.++|..+..............|++.+.|+ |--|
T Consensus 252 ~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal 324 (1249)
T 3sfz_A 252 KAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVV 324 (1249)
T ss_dssp TTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHH
T ss_pred Hhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHH
Confidence 223 3455777788755443211 1 2234567765 88888888888776433222222356788888775 4334
Q ss_pred H
Q 005066 431 A 431 (715)
Q Consensus 431 ~ 431 (715)
.
T Consensus 325 ~ 325 (1249)
T 3sfz_A 325 S 325 (1249)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.50 E-value=0.00029 Score=77.45 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccch-hhh-------Hhhh-----------------
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EEM-------FVGV----------------- 300 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~-~~~-------~vg~----------------- 300 (715)
....-++|+||||+|||+|++.++-.. +...++++.... ... -+|.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 333458999999999999999776443 234677776542 110 0110
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 301 --GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 301 --~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
....+..+........|.+|+||++-.+...... +......+.+.+++..|..+....++.||.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222233344567999999999888653322 1112234444555555555555556677776653
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.46 E-value=0.00021 Score=76.95 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---------CCCeEEeeccchh--hh--Hh----h-------------h--hHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEFE--EM--FV----G-------------V--GAR 303 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---------~~~fi~is~s~~~--~~--~v----g-------------~--~~~ 303 (715)
...-+.|+||||+|||+|++.++..+ +...++++..... .. ++ + . ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 33458899999999999999999987 2355777664321 10 00 0 0 001
Q ss_pred HHHHHHH----HHHh-----CCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 304 RVRDLFS----AAKK-----RSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 304 ~vr~lF~----~A~~-----~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
....++. .... ..|.+|+|||+-++....... ........+.+++..|..+....++.||.++...
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 1112222 2233 579999999998775321111 1111122344455444444444566666666543
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00058 Score=68.20 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
....-++|+||||+|||+|+..++... +.+.++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 334458999999999999998887653 6677776654
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00021 Score=75.65 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---------------C----CCeEEeeccch--hhhH------hhhh--------
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---------------G----VPFFSCSGSEF--EEMF------VGVG-------- 301 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---------------~----~~fi~is~s~~--~~~~------vg~~-------- 301 (715)
..-++|+||||+|||+|+..++..+ | .++++++...- .+.. .|..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCE
Confidence 3358999999999999999998763 2 56777776542 1110 0100
Q ss_pred -------HH----HHHHHHHHHHh-CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEeec
Q 005066 302 -------AR----RVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 366 (715)
Q Consensus 302 -------~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaT 366 (715)
.. .+..+....+. ..+.+|+||.+..+...... .........+.+++..|..+....++.||.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 12223333444 66899999999988632111 11112233456666666555555566666653
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.36 E-value=0.00012 Score=70.46 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
++.|+|+||||+|||++++.||..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 568999999999999999999999999988653
No 134
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.36 E-value=0.00034 Score=88.76 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----hhh--------hHHHHHHHHHHH----Hh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV--------GARRVRDLFSAA----KK 314 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----vg~--------~~~~vr~lF~~A----~~ 314 (715)
..++..++|+||||+|||+||..+|..+ +.++++++........ .|. ....+.+++..+ +.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~ 808 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHc
Confidence 4556679999999999999999998876 5678888776543221 121 011223344433 35
Q ss_pred CCCeEEEEcCchhhcC
Q 005066 315 RSPCIIFIDEIDAIGG 330 (715)
Q Consensus 315 ~~P~ILfIDEID~l~~ 330 (715)
..|++|+||+++.+..
T Consensus 809 ~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTP 824 (1706)
T ss_dssp TCCSEEEESCSTTCCC
T ss_pred cCCCEEEEechhhhcc
Confidence 7899999999999863
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.32 E-value=0.00075 Score=71.82 Aligned_cols=112 Identities=15% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCCCCe-EEEEcCCCCChHHHHHHHHHHh-----CCCeEEeeccchhh-hH---hhh-----------hHHHH-HHHHHH
Q 005066 254 GKLPKG-VLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEE-MF---VGV-----------GARRV-RDLFSA 311 (715)
Q Consensus 254 ~~~pkg-vLL~GPPGTGKT~LAralA~el-----~~~fi~is~s~~~~-~~---vg~-----------~~~~v-r~lF~~ 311 (715)
+-.|+| ++|+||||+|||+|+-.++..+ +..+++++...-.. .+ .|. ....+ -.+.+.
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 334444 6789999999999988876554 56788887754221 11 111 11122 222222
Q ss_pred ---HHhCCCeEEEEcCchhhcCCC-CCC---ch--H--HHHHHHHHHHHHhhccccCCCEEEEee
Q 005066 312 ---AKKRSPCIIFIDEIDAIGGSR-NPK---DQ--Q--YMKMTLNQLLVELDGFKQNEGIIVIAA 365 (715)
Q Consensus 312 ---A~~~~P~ILfIDEID~l~~~r-~~~---~~--~--~~~~~l~~LL~~Ld~~~~~~~ViVIaa 365 (715)
.+...|.+|+||-|.++.++. ..+ +. . ...+.+.+.|..|..+....++.||.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 255689999999999997532 111 10 0 223455666666555555566666655
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.31 E-value=0.00047 Score=72.18 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 230 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 230 d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
++....+.+++..+... ......|.-++|.||||+||||+++.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 55555666666553221 1233456679999999999999999999998656677777554
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.28 E-value=0.00064 Score=69.43 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 230 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 230 d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
++.+..+++++..+.... .....|..++|.||||+||||+++.|+..++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 445555555555433221 1345567799999999999999999999998777777777653
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00019 Score=70.43 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
..++.|+|.||||+||||+++.|++.++.+|+..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34557999999999999999999999999987553
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00019 Score=69.10 Aligned_cols=34 Identities=35% Similarity=0.602 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 4566799999999999999999999999887663
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.17 E-value=0.001 Score=73.92 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
|.....-++|.|+||+|||+|+..++..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 33444458999999999999999998754 5678777654
No 141
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.16 E-value=0.0024 Score=70.97 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC-chHHHHHHHHHHHHHhhcc--------ccCCCEEEEeec-----CCC
Q 005066 304 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK-DQQYMKMTLNQLLVELDGF--------KQNEGIIVIAAT-----NFP 369 (715)
Q Consensus 304 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~~~l~~LL~~Ld~~--------~~~~~ViVIaaT-----N~p 369 (715)
..++....+..+ +|||+||||.++.+.... .+-....+...||..|++- ...++|++|++. |..
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 344555555333 499999999998654322 2222334667788888863 235778899886 444
Q ss_pred CcccccccCCCCcccccccCCCCHHHHHHHHH
Q 005066 370 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIME 401 (715)
Q Consensus 370 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 401 (715)
+ +-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 318 d-lipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 318 D-LIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp G-SCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred h-cchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 4 4467775 999999999999999999993
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.00062 Score=68.06 Aligned_cols=36 Identities=33% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHH----hCCCeEEeecc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGS 291 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~e----l~~~fi~is~s 291 (715)
...-++|+|+||+|||+||..+|.. .+.++++++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3345899999999999999887643 36777777654
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.13 E-value=0.0026 Score=65.70 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998754
No 144
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.08 E-value=0.00036 Score=65.73 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=28.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
-|+|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999999887654
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.07 E-value=0.00068 Score=68.61 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=43.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc-------hhhhHhhhh-----HHHHHHHHHHHHh----CCCeE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE-------FEEMFVGVG-----ARRVRDLFSAAKK----RSPCI 319 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~-------~~~~~vg~~-----~~~vr~lF~~A~~----~~P~I 319 (715)
-++++||||+|||+++..++..+ +...+.+.... +.+. .|.. .....+++..++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 47789999999999998888766 55666553322 1111 1110 1122355666554 34789
Q ss_pred EEEcCchhh
Q 005066 320 IFIDEIDAI 328 (715)
Q Consensus 320 LfIDEID~l 328 (715)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00035 Score=67.18 Aligned_cols=31 Identities=35% Similarity=0.668 Sum_probs=28.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|+|+|+||+|||++++.|+..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999987543
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.05 E-value=0.00034 Score=67.09 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.++.|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999999888754
No 148
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.04 E-value=0.00077 Score=70.14 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeec
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSG 290 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~ 290 (715)
+.....-++|.||||+|||+|++.++..+ |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44445568999999999999999998876 446655543
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00045 Score=67.53 Aligned_cols=35 Identities=40% Similarity=0.599 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
...|..|+|+|+||+||||+++.|+..++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34456799999999999999999999999887655
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00034 Score=66.89 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=27.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|.||||+|||++++.||..++.+|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999888753
No 151
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.02 E-value=0.0049 Score=62.44 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=26.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeec
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 290 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~ 290 (715)
.|++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 59999999999999999998776 666655444
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00038 Score=67.39 Aligned_cols=33 Identities=39% Similarity=0.657 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH-hCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE-AGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e-l~~~fi~is 289 (715)
+..|+|+|+||+|||++++.|+.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999999 787776543
No 153
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.01 E-value=0.00065 Score=65.16 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCChHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAra 276 (715)
+.-+.|.||+|+|||||++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 33588999999999999994
No 154
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.01 E-value=0.00043 Score=65.58 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|+|.|+|||||||+++.||..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998765
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.99 E-value=0.0021 Score=71.25 Aligned_cols=39 Identities=28% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
|..+..-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 33444458999999999999999998754 5678877664
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00055 Score=64.86 Aligned_cols=31 Identities=32% Similarity=0.767 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
+..+.|+||||+||||+++.|++.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999987654
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00043 Score=66.75 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
...+.-+.|.||||+||||+++.|++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3344568999999999999999999988778888876554
No 158
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.00044 Score=66.38 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45799999999999999999999999877543
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.0005 Score=65.92 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+-|+|.|+||+||||+++.|+..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999999777654
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.93 E-value=0.00082 Score=77.17 Aligned_cols=97 Identities=24% Similarity=0.385 Sum_probs=54.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhH----hhhhHHHHHHHHHHH---------HhCCCeEEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGVGARRVRDLFSAA---------KKRSPCIIF 321 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~----vg~~~~~vr~lF~~A---------~~~~P~ILf 321 (715)
..++|+||||||||+++.+++..+ +.+++.+..+.-.... .+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 478999999999999999998755 6666655433211111 111111222222110 011347999
Q ss_pred EcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCC
Q 005066 322 IDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 368 (715)
Q Consensus 322 IDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~ 368 (715)
|||+..+. ...+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~-----------~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG-----------DALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC-----------HHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCC-----------HHHHHHHHHhC---cCCCEEEEEecccc
Confidence 99998762 22344454332 34456777776553
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.91 E-value=0.0048 Score=70.14 Aligned_cols=144 Identities=11% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHH----HhCCCe---EEeeccch-----h
Q 005066 227 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAG----EAGVPF---FSCSGSEF-----E 294 (715)
Q Consensus 227 ~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~----el~~~f---i~is~s~~-----~ 294 (715)
+|.++.+++|.+.+..- +...++.|.|+|++|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 39998877777665321 112345788999999999999999997 332222 22232221 1
Q ss_pred h---hH---hhhh-------------HHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005066 295 E---MF---VGVG-------------ARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 354 (715)
Q Consensus 295 ~---~~---vg~~-------------~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~ 354 (715)
. .. .+.. ...+...+...-.. .+++|+||+++.. . .. .+ ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------~---~~--~~-~~---- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------E---TI--RW-AQ---- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------H---HH--HH-HH----
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------h---hh--cc-cc----
Confidence 1 00 1100 01122333333334 3899999999753 1 11 11 11
Q ss_pred ccCCCEEEEeecCCCCcccccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005066 355 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 404 (715)
Q Consensus 355 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 404 (715)
..+..||.||....... .. +..+..+.++..+.++-.++|..+.
T Consensus 263 --~~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp --HTTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred --cCCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHh
Confidence 14556777776543321 11 1123457888899999999988875
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.89 E-value=0.0015 Score=66.90 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH---hCCCeEEeeccchh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSEFE 294 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e---l~~~fi~is~s~~~ 294 (715)
+.-|+|+|+||+||||+++.|+.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999998 78888877765544
No 163
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.0006 Score=65.79 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
+.-|+|.|+||+||||+++.|+..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998876553
No 164
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.0018 Score=69.96 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=43.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh----CCCeEEeec-cchh---------hhHhhhhHHHHHHHHHHHHhCCCeEEEEcC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSG-SEFE---------EMFVGVGARRVRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el----~~~fi~is~-s~~~---------~~~vg~~~~~vr~lF~~A~~~~P~ILfIDE 324 (715)
.+++.||+|+||||+.+++++.+ +..++.+.- .++. ...++.....+...+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998876 233333211 1110 001111112344566677778999999999
Q ss_pred ch
Q 005066 325 ID 326 (715)
Q Consensus 325 ID 326 (715)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.87 E-value=0.00052 Score=64.27 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=26.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-|+|.||||+||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887765
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.86 E-value=0.00064 Score=67.50 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 355799999999999999999999999877654
No 167
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.86 E-value=0.00052 Score=67.05 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~i 288 (715)
+-++++||||+|||+++..++..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999996666554 5555444
No 168
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00079 Score=65.83 Aligned_cols=33 Identities=33% Similarity=0.701 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
++-|+|.|+||+||||+++.|++.+|.+++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 567999999999999999999999998876543
No 169
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.00067 Score=64.19 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
+.|+|+|+||+|||++++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887754
No 170
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.83 E-value=0.0042 Score=70.22 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=47.5
Q ss_pred Ce-EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC--cccccccCCCCcccccccCCCCH
Q 005066 317 PC-IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDV 393 (715)
Q Consensus 317 P~-ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~ 393 (715)
|. +|+|||+..+... ....+..++..+-..-..-++.+|.+|.+|. .++..++. -|...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~--------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT--------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH--------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh--------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 54 8999999877521 1111223333332222345888999999987 57766654 5666778888888
Q ss_pred HHHHHHHH
Q 005066 394 EGRRQIME 401 (715)
Q Consensus 394 ~eR~~ILk 401 (715)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877764
No 171
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.82 E-value=0.0042 Score=70.94 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=50.5
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCC--cccccccCCCCcccccccCCCCHHH
Q 005066 318 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDVEG 395 (715)
Q Consensus 318 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~~e 395 (715)
.+|+|||++.+.... .......+..+... -..-+|.+|.+|.+|. .|+..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~----~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIV----GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHT----CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhh----hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 689999999885321 12233344444433 3457899999999997 68777664 566677888888888
Q ss_pred HHHHHH
Q 005066 396 RRQIME 401 (715)
Q Consensus 396 R~~ILk 401 (715)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 777764
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00085 Score=64.30 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
.+.-+.|+|++|+||||+++.++..+ |.+++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 44568899999999999999999988 99998887543
No 173
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.81 E-value=0.0046 Score=65.34 Aligned_cols=39 Identities=28% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
|..+..-++|.|+||+|||+|+..+|..+ +.+.++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34444459999999999999999998765 4677777653
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00068 Score=64.72 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFF 286 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi 286 (715)
|.-|+|.|+||+||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999987
No 175
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.79 E-value=0.00082 Score=68.86 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=29.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s 291 (715)
-++|.||||+|||++|+.||..++.+++..+.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877653
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.00071 Score=65.43 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999766544
No 177
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00061 Score=64.63 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH-HhCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAG-EAGVPFF 286 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~-el~~~fi 286 (715)
|.-|+|.|+||+||||+++.|+. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45689999999999999999998 4554443
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00068 Score=64.95 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.-|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.0047 Score=65.29 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
...|+-++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3456678999999999999999999876 55565555543
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.75 E-value=0.00071 Score=67.26 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999887655
No 181
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.73 E-value=0.00083 Score=66.29 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|+||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887665
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.73 E-value=0.00078 Score=67.27 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999999877654
No 183
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.00092 Score=62.99 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|+|+||+|||++++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999988754
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.72 E-value=0.00081 Score=64.48 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=26.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|+|.|+||+||||+++.|+..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3589999999999999999999999776543
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.72 E-value=0.0009 Score=65.97 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887755
No 186
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.71 E-value=0.0054 Score=68.10 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-------H-------------hhhhHHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F-------------VGVGARRVRDLFSAA 312 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-------~-------------vg~~~~~vr~lF~~A 312 (715)
.|.-++++|++|+||||++..||..+ |..+..+++..+... + .......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998766 666666665543110 0 011234456677777
Q ss_pred HhCCCeEEEEcCch
Q 005066 313 KKRSPCIIFIDEID 326 (715)
Q Consensus 313 ~~~~P~ILfIDEID 326 (715)
+...+.+++||...
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999874
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.71 E-value=0.001 Score=66.90 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
+..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877654
No 188
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.001 Score=64.88 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
++-|+|.|+||+||||+++.|+..++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998776553
No 189
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.00095 Score=67.83 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|.-|+|.||||+||||+++.|+..++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998777654
No 190
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.67 E-value=0.0078 Score=60.85 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=28.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s 291 (715)
.++++||+|+|||.++.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999999988777777654
No 191
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.65 E-value=0.00095 Score=67.23 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccchh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 294 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~~ 294 (715)
.+.|+-|+|.||||+||+|.|+.|+..++.+.+ +..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 345667899999999999999999999987654 444443
No 192
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.62 E-value=0.00079 Score=66.93 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
.|..|+|.||||+||||+++.|+..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999976543
No 193
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.61 E-value=0.0015 Score=63.89 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
.+.-+.|.||+|+||||+++.|++.+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 45579999999999999999999999765543
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.59 E-value=0.0014 Score=62.29 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
..++|.||||+||||+++.+++.+|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999999876654
No 195
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.59 E-value=0.011 Score=58.41 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=59.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc---------chhhhHh-----------------hhhHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS---------EFEEMFV-----------------GVGARRVRDLF 309 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s---------~~~~~~v-----------------g~~~~~vr~lF 309 (715)
.|++|+++|.|||++|-.+|-.+ |..+..+... .+...+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999998766 6666666221 1222220 01123455566
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 310 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 310 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
..++. ....+|+|||+.....-+-- ...+++..+. ......-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l--------~~~ev~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL--------PLEEVISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS--------CHHHHHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC--------CHHHHHHHHH--hCcCCCEEEEECCCC
Confidence 66544 44689999999654211100 0123444444 244566777787754
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.45 E-value=0.0016 Score=64.38 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.|+|.|+||+||||+++.|+..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999887665
No 197
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.42 E-value=0.0018 Score=64.60 Aligned_cols=29 Identities=38% Similarity=0.715 Sum_probs=25.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|+|.||||+||+|.|+.|+..+|++.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 78999999999999999999998876543
No 198
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0024 Score=61.20 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=27.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
-|.|.|+||+||||+++.|+..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 89988765
No 199
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.42 E-value=0.0015 Score=67.40 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=41.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC----CCeEEeeccch----------h-hhHhhhhHHHHHHHHHHHHhCCCeEEEEc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEF----------E-EMFVGVGARRVRDLFSAAKKRSPCIIFID 323 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~----~~fi~is~s~~----------~-~~~vg~~~~~vr~lF~~A~~~~P~ILfID 323 (715)
-++|.||+|+||||+++++++... ..++ +....+ . ...++.....++..+..+-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 588999999999999999998652 2222 211110 0 00011111234555556655689999999
Q ss_pred Cch
Q 005066 324 EID 326 (715)
Q Consensus 324 EID 326 (715)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.36 E-value=0.0067 Score=60.87 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..-+.|.||+|+|||||.+.|++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 33588999999999999999999764
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.36 E-value=0.0025 Score=63.10 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
..|.|.||||+||||+++.|++.+|++++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4689999999999999999999999877643
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.0035 Score=68.02 Aligned_cols=78 Identities=22% Similarity=0.366 Sum_probs=45.9
Q ss_pred HhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHhC----CCeEEeecc-ch--------h-hhHhhhhHHHHHHHHHHHHh
Q 005066 249 FTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGS-EF--------E-EMFVGVGARRVRDLFSAAKK 314 (715)
Q Consensus 249 ~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el~----~~fi~is~s-~~--------~-~~~vg~~~~~vr~lF~~A~~ 314 (715)
+..+.......++|.||+|+||||+++++++.+. ..++.+... ++ . ...+|.....+...+..+-.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3333334444589999999999999999998762 233232211 00 0 00011111233455556656
Q ss_pred CCCeEEEEcCch
Q 005066 315 RSPCIIFIDEID 326 (715)
Q Consensus 315 ~~P~ILfIDEID 326 (715)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999984
No 203
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.33 E-value=0.0022 Score=68.43 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
++.++|+||+|+|||++++.||..++.+++.++.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457999999999999999999999998888876543
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.32 E-value=0.014 Score=61.17 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCchhHhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccc
Q 005066 230 DEAKQELEEIVHYLRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSE 292 (715)
Q Consensus 230 d~~k~eL~eiv~~L~~~~~~~~lg-~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~ 292 (715)
+.+++.+.+.+..+-.+.. .+. ...+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 79 ~~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3455556554444322221 111 2345679999999999999999998765 55666666544
No 205
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.31 E-value=0.0027 Score=62.06 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
..+.-+.|.||+|+||||+++.|++.+ |...+.+++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 445578899999999999999999988 55544555443
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.30 E-value=0.0026 Score=61.69 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-CCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-~~~fi~is 289 (715)
+.-|.|.|+||+||||+++.|+..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 57887765
No 207
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.002 Score=62.86 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
-|.|+|++|+||||+++.|++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887776653
No 208
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.26 E-value=0.0026 Score=61.53 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
-|.|.|+||+||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.25 E-value=0.018 Score=69.92 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 227 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 227 ~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
+|.++.+++|.+.+... ...+-|.|+||.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89998888887765421 12457899999999999999999863
No 210
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.23 E-value=0.011 Score=65.56 Aligned_cols=38 Identities=26% Similarity=0.081 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
..+..-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3333458999999999999999998765 6778777654
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.0026 Score=63.57 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=26.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-|+|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766544
No 212
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.22 E-value=0.0035 Score=60.36 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
|.|.|++|+||||+++.|+..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99987664
No 213
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.22 E-value=0.0017 Score=62.10 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSE 292 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~ 292 (715)
-|+|.|+||+||||+++.|+..++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 488999999999999999999875 3455554333
No 214
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.22 E-value=0.0033 Score=61.06 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=28.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|.|.|++|+|||++++.|+..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998887654
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.22 E-value=0.0073 Score=66.88 Aligned_cols=72 Identities=24% Similarity=0.220 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh----------Hhh----------hhHHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----------FVG----------VGARRVRDLFSAA 312 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~----------~vg----------~~~~~vr~lF~~A 312 (715)
.|.-+++.||+|+||||++..||..+ |..+..+++..+... ..+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 36678999999999999999999766 666666665433211 001 0112234445555
Q ss_pred HhCCCeEEEEcCchh
Q 005066 313 KKRSPCIIFIDEIDA 327 (715)
Q Consensus 313 ~~~~P~ILfIDEID~ 327 (715)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998753
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.19 E-value=0.011 Score=66.39 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3334458999999999999999998765 5678877764
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.18 E-value=0.0067 Score=59.77 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccch
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 293 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~ 293 (715)
..+.-++|.|+||+||||+++.|++.+ |.+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 345568999999999999999999876 467777776544
No 218
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0019 Score=69.66 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
.++|+||||+|||+++++||+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999988855
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.10 E-value=0.0031 Score=61.02 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|..|.|.|++|+|||++++.|+.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456899999999999999999998 8777654
No 220
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.09 E-value=0.0043 Score=62.68 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
|.-+.|.||||+||||+++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 6679999999999999999999999877654
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.08 E-value=0.0029 Score=61.86 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.+.|.||+|+||||+++.+++ +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999998 88887643
No 222
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.07 E-value=0.029 Score=63.40 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHH--HHHHh--CCCeEEeeccchhhhH------hhh------------------------
Q 005066 255 KLPKGVLLVGPPGTGKTMLARA--IAGEA--GVPFFSCSGSEFEEMF------VGV------------------------ 300 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAra--lA~el--~~~fi~is~s~~~~~~------vg~------------------------ 300 (715)
.....++|.||+|+|||+|++. +++.. +..-+++++.+..... +|.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~ 116 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQE 116 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhh
Confidence 3445699999999999999999 44543 4455666554321100 000
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 301 ------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 301 ------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
................|.+|+|||+-.+... ...+......+..++..+. . .++.||.+|++.+.+
T Consensus 117 ~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~--~~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 117 VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ--YDASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT--TCCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred hhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh--cCCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 0112233333444567889999999876432 1222334445556665553 2 356777788777664
No 223
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.04 E-value=0.0021 Score=62.75 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
.+.-|+|.|+||+||||+++.|+..++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356799999999999999999999875543
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.01 E-value=0.0047 Score=62.83 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|..+.|.||||+|||++++.|++.++.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 55799999999999999999999999776543
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0038 Score=61.47 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
-|.|+|++||||||+++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4789999999999999999999898876543
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.98 E-value=0.0054 Score=62.34 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCCe--------EEeeccchh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPF--------FSCSGSEFE 294 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~f--------i~is~s~~~ 294 (715)
..|.-|.|.|+||+||||+++.|+..++.++ ..++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3455789999999999999999999999873 356666654
No 227
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.0058 Score=59.35 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVP 284 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~ 284 (715)
+.-|+|.|+||+||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999998764
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.95 E-value=0.0025 Score=62.36 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~ 283 (715)
.|.-|+|.|+||+||||+++.|+..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999998743
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0042 Score=63.77 Aligned_cols=33 Identities=36% Similarity=0.720 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
...|.|.|++|+||||+++.||+.++.+|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 347999999999999999999999999887653
No 230
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.89 E-value=0.018 Score=66.34 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999988876554
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.88 E-value=0.031 Score=54.07 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=28.3
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAr 275 (715)
+|+|+.-.+++.+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 2 ~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR--GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence 466665555555555431 122232222211 1112579999999999998643
No 232
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.82 E-value=0.0053 Score=60.46 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|..|.|+|++|+|||++++.|+..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887654
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.78 E-value=0.0069 Score=59.33 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456799999999999999999999884
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.78 E-value=0.0076 Score=57.91 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
.+.-++|.|+||+||||+++.++..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34568999999999999999999887 4445555543
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.77 E-value=0.0055 Score=60.48 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|.-|.|.|++|+||||+++.|+. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 44689999999999999999998 88777654
No 236
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.056 Score=61.06 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhhHh------h----------------------hhHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------G----------------------VGAR 303 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~~v------g----------------------~~~~ 303 (715)
....-++|.||||+|||+|++.++... |.+.+++...+-...+. + .+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 333458999999999999999998765 44555554432111000 0 1223
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 304 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 304 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
..+.++..+....|.+|+||=+..+-.. . .. ......+..++..+. . .++.||.++...
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~~-~-~~-~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALARG-V-SN-NAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSS-S-CH-HHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHhh-C-Ch-HHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 4555666667788999999966655322 1 11 224444555555543 2 345555555544
No 237
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.73 E-value=0.0034 Score=67.00 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccc-h-----hhh--HhhhhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE-F-----EEM--FVGVGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~-~-----~~~--~vg~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
...++|.||+|+|||||++++++... .-.+.+.... + ... ++..+....+..+..+-...|.+|++||..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 34699999999999999999999873 2234443321 1 110 110023456667777777889999999986
Q ss_pred h
Q 005066 327 A 327 (715)
Q Consensus 327 ~ 327 (715)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 238
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.69 E-value=0.0042 Score=64.44 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-CCCeEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFFS 287 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el-~~~fi~ 287 (715)
|.-|+|.|+||+||||+++.|+... +.+++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 4568999999999999999999974 655443
No 239
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.69 E-value=0.019 Score=65.03 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccch
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEF 293 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~ 293 (715)
|.-|+|+|.||+|||++++.|+..++ .+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 44689999999999999999999884 44555565443
No 240
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.66 E-value=0.026 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
+.+++.+|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999988877654
No 241
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.66 E-value=0.0051 Score=65.93 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
++-|+|.||+|+|||+|+..||..++.+++..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998888776554
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.64 E-value=0.0096 Score=58.56 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999875
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.63 E-value=0.0092 Score=59.90 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
.+..|.|.|++|+|||++++.|++.+|++++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 344689999999999999999999999887653
No 244
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.63 E-value=0.021 Score=56.45 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=41.0
Q ss_pred eEEEEcCCCCChH-HHHHHHHHHh--CCCeEEeecc---chhhhHh---hh-----hHHHHHHHHHHHHhCCCeEEEEcC
Q 005066 259 GVLLVGPPGTGKT-MLARAIAGEA--GVPFFSCSGS---EFEEMFV---GV-----GARRVRDLFSAAKKRSPCIIFIDE 324 (715)
Q Consensus 259 gvLL~GPPGTGKT-~LAralA~el--~~~fi~is~s---~~~~~~v---g~-----~~~~vr~lF~~A~~~~P~ILfIDE 324 (715)
=.++|||.|+||| .|.+++.+.. +..++.+... .+.+..+ |. ......+++...+ ...+|+|||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 4788999999999 8999886644 6677777643 1111111 10 0011223333332 246999999
Q ss_pred chhh
Q 005066 325 IDAI 328 (715)
Q Consensus 325 ID~l 328 (715)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9977
No 245
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.63 E-value=0.037 Score=66.71 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh-----CCCe----E----------EeeccchhhhHhhhhHHHHHHHHHHHH-hC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA-----GVPF----F----------SCSGSEFEEMFVGVGARRVRDLFSAAK-KR 315 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el-----~~~f----i----------~is~s~~~~~~vg~~~~~vr~lF~~A~-~~ 315 (715)
...-++|+||.|+||||+.|.++... |..+ . .+...+............++++...++ ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34468999999999999999987532 3211 0 111111111111111111222222222 46
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCCCcc
Q 005066 316 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 372 (715)
Q Consensus 316 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p~~L 372 (715)
.|.+|++||.-+=. +......+...++..+. ...+..+|.+|+..+..
T Consensus 752 ~p~LlLLDEP~~Gl------D~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 752 SQSLVILDELGRGT------STHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp TTCEEEEESTTTTS------CHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred CCCEEEEeCCCCCC------CHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHH
Confidence 78999999985321 12222233334554432 23466788888877654
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.0084 Score=59.12 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+.-+.|.||+|+|||++++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999999874
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.59 E-value=0.0052 Score=60.13 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh-CCCeEEee
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCS 289 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el-~~~fi~is 289 (715)
.-+.|.|+||+||||+++.|++.+ +++++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347899999999999999999987 66555443
No 248
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.0076 Score=63.89 Aligned_cols=38 Identities=34% Similarity=0.543 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccch
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 293 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~~ 293 (715)
.|+-++|.||+|+|||+|+..+|..++.+++..+.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45678999999999999999999999988877765443
No 249
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.52 E-value=0.06 Score=57.62 Aligned_cols=39 Identities=23% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
|..+..-++|.|+||+|||+|+..+|..+ +.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34444458999999999999999998764 6777777653
No 250
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.49 E-value=0.007 Score=62.87 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
|.-|.|+|+||+||||+++.|+ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 688776544
No 251
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.49 E-value=0.011 Score=60.35 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
..|.|.||+|+||||+++.|+..+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 358899999999999999999999987764
No 252
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.075 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA 278 (715)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998766554
No 253
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.48 E-value=0.013 Score=64.25 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
...|.-|+|+|+||+||||+++.++..++..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3446679999999999999999999998765543
No 254
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.44 E-value=0.021 Score=66.08 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccch
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 293 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~ 293 (715)
.+.-|+|+|+||+||||++++|+..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45569999999999999999999999 999999875444
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0095 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.+-+.|.||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998763
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0082 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
.+.-+.|.||+|+||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.42 E-value=0.13 Score=57.66 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..+.-+.|.||+|+|||||++.|++.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344568899999999999999999876
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.41 E-value=0.01 Score=58.29 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
+-|+|+||+|+|||+|++.|..+..-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999988864433
No 259
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.35 E-value=0.12 Score=53.98 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCC----CCCCeEEEEcCCCCChHHHHHHHHHHh-----CCCeEEeec
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG----KLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSG 290 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~----~~pkgvLL~GPPGTGKT~LAralA~el-----~~~fi~is~ 290 (715)
.+|+++.-.+.+.+.|++. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-.. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4688887677776666642 1333332322111 113589999999999999876555443 444555443
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.30 E-value=0.028 Score=54.98 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
.+.-+.|.||+|+||||+++.+++.+ +.+++..+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34458899999999999999999876 66666654443
No 261
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.18 E-value=0.07 Score=64.46 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~ 279 (715)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999954
No 262
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.18 E-value=0.052 Score=64.42 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977777554
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.17 E-value=0.013 Score=56.29 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
-++|.||+|+||||+++.|++..+. .+.+++.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999986543 23444433
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.16 E-value=0.01 Score=58.07 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~--~~fi~i 288 (715)
+.-+.|.||+|+|||||++.|++.++ +.++..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34588999999999999999999987 555443
No 265
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.15 E-value=0.02 Score=56.36 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=40.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh---h----hHhhhh-----HHHHHHHHHHHHhCCCeEEEE
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE---E----MFVGVG-----ARRVRDLFSAAKKRSPCIIFI 322 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~---~----~~vg~~-----~~~vr~lF~~A~~~~P~ILfI 322 (715)
+-.+++||+|+|||+.+-.++..+ +..++.+...... . ...|.. .....+++..+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357889999999999888887766 6665555321100 0 001100 0111245554432 3579999
Q ss_pred cCchhh
Q 005066 323 DEIDAI 328 (715)
Q Consensus 323 DEID~l 328 (715)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999875
No 266
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.14 E-value=0.042 Score=58.30 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccc
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 292 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~ 292 (715)
...++-++++||+|+||||++..+|..+ +..+..+++..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456679999999999999999999876 56666665543
No 267
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.10 E-value=0.012 Score=63.12 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
+-|+|.||+|+|||++++.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999976665554
No 268
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.09 E-value=0.046 Score=60.48 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
.|..|+++|+||+||||++..||..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999999876 4566666654
No 269
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.07 E-value=0.31 Score=47.51 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=36.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCC---CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~---~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..+|+|+.-.+++.+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 35689987777776666541 1333333332111 113579999999999998766655444
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.06 E-value=0.075 Score=58.77 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=47.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh----CCCeEEeeccchhhhHh----------h----------hhHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV----------G----------VGARRVRDLFS 310 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el----~~~fi~is~s~~~~~~v----------g----------~~~~~vr~lF~ 310 (715)
..|+.|+++|++|+||||++-.||..+ |..+..+++..+..... + .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999999998665 67777777764322110 0 01223355666
Q ss_pred HHHhCCCeEEEEcCc
Q 005066 311 AAKKRSPCIIFIDEI 325 (715)
Q Consensus 311 ~A~~~~P~ILfIDEI 325 (715)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555679999864
No 271
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.02 E-value=0.016 Score=63.10 Aligned_cols=24 Identities=50% Similarity=0.764 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 347899999999999999999865
No 272
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.96 E-value=0.016 Score=57.27 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=27.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
-|.|.||+|||||++++.||..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.96 E-value=0.014 Score=62.05 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
+-++|.||+|+|||+|+..||..++..++..+.-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 45889999999999999999999987776665443
No 274
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.94 E-value=0.011 Score=58.81 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
+++++|.||+|+|||+||..++...+ +++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 45799999999999999999998876 6555443
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.86 E-value=0.017 Score=55.83 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+.-+.|.||+|+||||+++.|++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999985
No 276
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.81 E-value=0.032 Score=60.22 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+.|.||+|+|||||.+.|++..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999865
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.79 E-value=0.068 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..|.-+.|.||+|+||||+++.||+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999876
No 278
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.79 E-value=0.17 Score=58.62 Aligned_cols=57 Identities=26% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
..|-+=.-.+++++.+...+. . +.-.|+.||||||||+++-.+...+ +.+++.+..+
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~---~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS---Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH---C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccccCCCCCHHHHHHHHHHhc---C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 344333345677777765543 1 1147899999999998655554433 5566666544
No 279
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.77 E-value=0.11 Score=50.96 Aligned_cols=58 Identities=21% Similarity=0.134 Sum_probs=35.5
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHH-HHHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTML-ARAIAG 279 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~L-AralA~ 279 (715)
..+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||.. +-.+..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 45799987777777666542 133333333211 11235799999999999987 333343
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.74 E-value=0.093 Score=55.02 Aligned_cols=35 Identities=34% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
+.-+++.|++|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5668899999999999999999876 6666666654
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.71 E-value=0.018 Score=55.62 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+-+.|.||+|+||||+++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 282
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.66 E-value=0.081 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
..|+.|+|+|+||+||||++..||..+ |..+..+++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 346679999999999999999999766 6666666653
No 283
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.61 E-value=0.067 Score=58.92 Aligned_cols=93 Identities=17% Similarity=0.310 Sum_probs=51.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHHhCC---CeEEeecc-chh
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEAGV---PFFSCSGS-EFE 294 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~~~pk-gvLL~GPPGTGKT~LAralA~el~~---~fi~is~s-~~~ 294 (715)
..+++++.-....+..|+.++ . .+. -++|.||+|+||||+.+++++.+.. .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~-----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---K-----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---T-----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---H-----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 456777765555444455431 1 122 3789999999999999999998742 33332211 110
Q ss_pred -h----hHhh-hhHHHHHHHHHHHHhCCCeEEEEcCch
Q 005066 295 -E----MFVG-VGARRVRDLFSAAKKRSPCIIFIDEID 326 (715)
Q Consensus 295 -~----~~vg-~~~~~vr~lF~~A~~~~P~ILfIDEID 326 (715)
. ..+. ............+-...|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000 000112233334445679999999974
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.59 E-value=0.033 Score=60.25 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+-|.||+|+|||||.+.|++..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 348899999999999999999855
No 285
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.52 E-value=0.13 Score=50.93 Aligned_cols=54 Identities=26% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAr 275 (715)
..+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 45699987777776666542 133333333211 1123579999999999998543
No 286
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.49 E-value=0.018 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
...|.-|.|.||+|+|||||++.|++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34455688999999999999999998875
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.45 E-value=0.083 Score=55.26 Aligned_cols=35 Identities=29% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeec
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 290 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~ 290 (715)
.++.+.++|++|+|||+++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34568889999999999999999876 555555554
No 288
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.42 E-value=0.021 Score=62.59 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeEEeec
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 290 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi~is~ 290 (715)
++-|+|.||+|+|||+|+..||..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999887766554
No 289
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.34 E-value=0.02 Score=58.06 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
-+-|.||||+||||+++.|+..++++++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 366899999999999999999999887644
No 290
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.32 E-value=0.024 Score=55.51 Aligned_cols=26 Identities=38% Similarity=0.733 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
++-+.|.||+|+|||||++.|++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998764
No 291
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.32 E-value=0.021 Score=64.48 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeeccc-hhh---hH--------hhhhHHHHHHHHHHHHhCCCeEEEE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE-FEE---MF--------VGVGARRVRDLFSAAKKRSPCIIFI 322 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s~-~~~---~~--------vg~~~~~vr~lF~~A~~~~P~ILfI 322 (715)
+.+++|.||+|+||||+++++++.+. ...+.+.... +.- .+ ++.....+.++...+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45799999999999999999998773 3344443322 110 00 0111122344555555678999999
Q ss_pred cCch
Q 005066 323 DEID 326 (715)
Q Consensus 323 DEID 326 (715)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9984
No 292
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.31 E-value=0.21 Score=48.13 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCChHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAr 275 (715)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 293
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.28 E-value=0.19 Score=59.72 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
..-++|+||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999999875
No 294
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.15 E-value=0.19 Score=50.15 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAr 275 (715)
+-.+|+++.-.+++.+.|.+. .+..|..++... ....+.+++.+|+|+|||+..-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 446788887677666666541 133333332211 1123579999999999998743
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.09 E-value=0.022 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHH-HHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIA-GEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA-~el 281 (715)
+.-+.|.||+|+||||+++.|+ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4458899999999999999999 765
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.08 E-value=0.034 Score=54.99 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.++-+.|.||+|+|||+|++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999998764
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.04 E-value=0.057 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445568899999999999999999876
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.03 E-value=0.031 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+.-+.|.||+|+|||||++.|++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999977
No 299
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.02 E-value=0.33 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...|+|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998864
No 300
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.01 E-value=0.37 Score=47.28 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=31.9
Q ss_pred CCCCCCccC-CCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005066 218 ESNTKFSDV-KGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 218 ~~~~~f~dv-~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAr 275 (715)
.+..+|.|. .-..++.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345678884 4345555555432 133343333221 1123579999999999998544
No 301
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.98 E-value=0.15 Score=50.91 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHHH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAra 276 (715)
+..+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 346799987667666666531 133333333221 11235799999999999986433
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.96 E-value=0.039 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||++.+++.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3358899999999999999999987
No 303
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.92 E-value=0.093 Score=60.10 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhC----CCeEEeeccchh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFE 294 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~----~~fi~is~s~~~ 294 (715)
.+..|+|+|+||+||||+|++|+..++ .+++.++...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 345689999999999999999999986 788888765543
No 304
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.92 E-value=0.24 Score=54.63 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchhhh-------H---hh----------hhHHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F---VG----------VGARRVRDLFSAA 312 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~~~-------~---vg----------~~~~~vr~lF~~A 312 (715)
.|..+++.||+|+||||++..+|..+ +..+..+++..+... + .+ ......+..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 555655555322111 0 00 0012235566666
Q ss_pred HhCCCeEEEEcCch
Q 005066 313 KKRSPCIIFIDEID 326 (715)
Q Consensus 313 ~~~~P~ILfIDEID 326 (715)
+.....+++||=.-
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 54556788887543
No 305
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.89 E-value=0.27 Score=52.58 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
+.-|.|+|+||+|||+++..++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999998875 44444443
No 306
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.88 E-value=0.11 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeec
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSG 290 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~---~~fi~is~ 290 (715)
.|.-|+|.|.||+|||++++.++..++ .+...++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 345799999999999999999999874 44455443
No 307
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.83 E-value=0.034 Score=54.28 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=28.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCeEEeeccc
Q 005066 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 292 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el~~~fi~is~s~ 292 (715)
+|++|++|+|||++|..++.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 308
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.82 E-value=0.52 Score=49.55 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhh-----CCCCCCeEEEEcCCCCChHHHHHHHH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRL-----GGKLPKGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~l-----g~~~pkgvLL~GPPGTGKT~LAralA 278 (715)
.+|+++.-.+++.+.|.+. .+..|..++.. -...++++++.+|+|+|||+.+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM--KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4677777666666666541 12233322221 11234789999999999998655443
No 309
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.80 E-value=0.036 Score=55.80 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEE
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 287 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~ 287 (715)
-|.|.|++|||||++++.||..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999864
No 310
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.75 E-value=0.033 Score=58.17 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC---CCeEEeeccchh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFE 294 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~---~~fi~is~s~~~ 294 (715)
.-|.|.||+|+||||+++.|+..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998775 445556655554
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.74 E-value=0.038 Score=55.71 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVP 284 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~ 284 (715)
-+-|.||+|+||||+++.|++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47799999999999999999988754
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.73 E-value=0.044 Score=57.83 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHHhCCC
Q 005066 253 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP 284 (715)
Q Consensus 253 g~~~pkgvLL~GPPGTGKT~LAralA~el~~~ 284 (715)
.++....+.|+||+|+|||||++.|++.+...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 34445569999999999999999999987433
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.73 E-value=0.057 Score=54.27 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSC 288 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~--~~fi~i 288 (715)
+.-|.|.||||+||||+++.|++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999986 455443
No 314
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.68 E-value=0.043 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..-+.|.||+|+|||||++.|++...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999874
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.68 E-value=0.017 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~ 282 (715)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 316
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.59 E-value=0.19 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
...++|+||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 446889999999999999999874
No 317
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.57 E-value=0.28 Score=49.43 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAr 275 (715)
..+|+++.-.+.+.+.|++. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 35788887666666655431 123333333211 1123679999999999998643
No 318
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.47 E-value=0.077 Score=57.28 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...|.-+.|.||+|+||||+++.||+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3445568899999999999999999976
No 319
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.37 E-value=0.075 Score=53.26 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=23.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999999888887655 66666654
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.25 E-value=0.07 Score=57.43 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC--CCeEEeecc-chh-----hh--Hh-------hh-hHHHHHHHHHHHHhCC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGS-EFE-----EM--FV-------GV-GARRVRDLFSAAKKRS 316 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~--~~fi~is~s-~~~-----~~--~v-------g~-~~~~vr~lF~~A~~~~ 316 (715)
.....++|.||+|+|||||++++++... ...+.+... ++. .. ++ +. ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3344799999999999999999998773 223333321 110 00 11 10 1223556666676778
Q ss_pred CeEEEEcCch
Q 005066 317 PCIIFIDEID 326 (715)
Q Consensus 317 P~ILfIDEID 326 (715)
|.++++||+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999975
No 321
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.24 E-value=0.21 Score=48.86 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=30.1
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCC---CCCCeEEEEcCCCCChHHHHHH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~---~~pkgvLL~GPPGTGKT~LAra 276 (715)
.+|+++.-.+.+.+.|++. .+..+..++.... ...+.+++.+|+|+|||..+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTL--RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 4577776556555555431 1222322222110 1125799999999999986433
No 322
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.21 E-value=0.68 Score=48.76 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
.+|+++.-...+.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-..+-.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHH
Confidence 4688877667766666542 133333333221 112357999999999999876554443
No 323
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.15 E-value=0.2 Score=58.46 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCccCCCcHHHHHHHHHHHHHhcCchhHhh--hC--CCCCCeEEEEcCCCCChHHHHH
Q 005066 222 KFSDVKGVDEAKQELEEIVHYLRDPKRFTR--LG--GKLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 222 ~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~--lg--~~~pkgvLL~GPPGTGKT~LAr 275 (715)
+|+++.-.+.+++.+++. .+..+..++. +. ....+++++.||+|+|||+.+.
T Consensus 2 ~f~~l~l~~~~~~~l~~~--g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKER--GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp BGGGCCSCHHHHHHHHHT--TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHH
T ss_pred cHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHH
Confidence 466665555555554431 1222222221 11 2335689999999999999873
No 324
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.14 E-value=0.38 Score=51.40 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHHHHH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAralA 278 (715)
...+|+++.-.+++.+.|.+. .+..|..++... ....+.+++.+|+|+|||+.+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345799987777776666542 133333333221 1123579999999999997665443
No 325
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.06 E-value=0.36 Score=51.29 Aligned_cols=57 Identities=19% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCC---CCCCeEEEEcCCCCChHHHHHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~---~~pkgvLL~GPPGTGKT~LAralA 278 (715)
..+|+|+.-.+++.+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45789987777776666541 1222332222111 112569999999999998655444
No 326
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.04 E-value=0.26 Score=60.13 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA 278 (715)
...++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999993
No 327
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.02 E-value=0.057 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+.-+-|.||+|+|||||++.|++.++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999876
No 328
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.93 E-value=0.37 Score=55.31 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+...-+.|.||+|+|||||++.+++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 334458999999999999999999865
No 329
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.84 E-value=0.2 Score=58.34 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhh--h--CCCCCCeEEEEcCCCCChHHHHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTR--L--GGKLPKGVLLVGPPGTGKTMLARAI 277 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~--l--g~~~pkgvLL~GPPGTGKT~LAral 277 (715)
+.+|+++.-.+.+++.+++. . +..+..++. + .....+++++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~-g-~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR-G-IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT-S-CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC-C-CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 35688887666665555431 1 222222221 1 1234678999999999999988433
No 330
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.1 Score=49.56 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 229 VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 229 ~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...+++++++++..+... .......|++.|++|+|||+|..++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455556665554432221 12334479999999999999999998754
No 331
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.78 E-value=0.14 Score=55.18 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA 278 (715)
+.+++.+|+|+|||+.+-..+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 579999999999999554443
No 332
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.74 E-value=0.061 Score=52.60 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+.|.||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 333
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.71 E-value=0.074 Score=51.75 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 358999999999999999999874 4433
No 334
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.66 E-value=0.26 Score=49.94 Aligned_cols=67 Identities=19% Similarity=0.066 Sum_probs=36.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc-------chhhhHhhhh-----HHHHHHHHHHHHhCCCeEEEEc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS-------EFEEMFVGVG-----ARRVRDLFSAAKKRSPCIIFID 323 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el---~~~fi~is~s-------~~~~~~vg~~-----~~~vr~lF~~A~~~~P~ILfID 323 (715)
-.+++||.|+|||+.+-..+..+ |..++.+... .+.+.. |.. .....+++..+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 46789999999997666665444 5555544321 111110 100 00112344444 335799999
Q ss_pred Cchhh
Q 005066 324 EIDAI 328 (715)
Q Consensus 324 EID~l 328 (715)
|+.-+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99876
No 335
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.66 E-value=0.067 Score=53.62 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
|+-|.|.|++|+||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999984
No 336
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.66 E-value=0.057 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~ 282 (715)
-.+|+||.|+|||+++++|...++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999998775
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.65 E-value=0.31 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||||+|||||.+.+++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999865
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.58 E-value=0.12 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..|.-+.|.||+|+||||+++.|++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999999875
No 339
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.50 E-value=0.61 Score=49.98 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=26.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh----CCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el----~~~fi~is~s 291 (715)
++++.+|+|+|||+.+-.++... +.+.+.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999988886665 5666666554
No 340
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.49 E-value=0.14 Score=58.41 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC----CCeEEeeccchh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFE 294 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~----~~fi~is~s~~~ 294 (715)
+..+.|.|++|+|||||+++|++.++ ..+..+++..+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 34588999999999999999999984 345556665553
No 341
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.45 E-value=0.17 Score=56.14 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
+-.++.|+||||||++...++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 35789999999999999888753
No 342
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.38 E-value=0.034 Score=56.65 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh-CCCe
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA-GVPF 285 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el-~~~f 285 (715)
.+.-|.|.|++|+||||+++.|+..+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999988 4333
No 343
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.38 E-value=0.2 Score=55.07 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=28.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEeecc
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 291 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is~s 291 (715)
.+||.+|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999999988888888777665
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.38 E-value=0.089 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.|++|+|||+|++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998875
No 345
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.35 E-value=0.073 Score=59.39 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999987754
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.30 E-value=0.082 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.+.-+.|.||+|+|||||++.|++.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344578999999999999999999773
No 347
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.29 E-value=0.091 Score=61.27 Aligned_cols=34 Identities=35% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHHH-HHHh--CCCeEEeec
Q 005066 257 PKGVLLVGPPGTGKTMLARAI-AGEA--GVPFFSCSG 290 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAral-A~el--~~~fi~is~ 290 (715)
.+++++.||+|+|||+.+-.. ...+ +...+.+..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 458999999999999987433 2222 444444433
No 348
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.09 E-value=0.33 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-+.|.||+|+|||||++.+++..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 33458899999999999999999866
No 349
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.04 E-value=0.091 Score=52.46 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCeEEee
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 289 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~fi~is 289 (715)
.|-|+|..|||||++++.++. +|+|++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999998 898887554
No 350
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.01 E-value=1.2 Score=49.01 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh--------CCCeEEeecc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA--------GVPFFSCSGS 291 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el--------~~~fi~is~s 291 (715)
+.+++.+|+|+|||..+-..+-.. +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 479999999999999876666544 5555655543
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.98 E-value=0.11 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999876
No 352
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.95 E-value=0.26 Score=56.12 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeeccchh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 294 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s~~~ 294 (715)
+.-|+|+|+||+|||++++.|+..+ |.++..+++..+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568999999999999999999876 4567777765543
No 353
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.89 E-value=0.36 Score=51.39 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHHHHHH
Q 005066 221 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAI 277 (715)
Q Consensus 221 ~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~LAral 277 (715)
.+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 4688877777776666541 133333332211 112346999999999999874433
No 354
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.76 E-value=0.52 Score=49.70 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhCC---CCCCeEEEEcCCCCChHHHHH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLAR 275 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg~---~~pkgvLL~GPPGTGKT~LAr 275 (715)
...+|+++.-.+.+.+.|... .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345799987777776666542 1333333332211 112579999999999998743
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.72 E-value=0.11 Score=49.98 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
+-+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999875 44444443
No 356
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.71 E-value=0.15 Score=50.79 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh---CCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el---~~~fi~i 288 (715)
.-|.|.|++|+||||+++.|+..+ +.+++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 357889999999999999999877 4555544
No 357
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.71 E-value=0.18 Score=47.38 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
-|+|.|+||+|||+|.+++.+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 358
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.65 E-value=0.39 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.|+||+|||+++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999998765
No 359
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.56 E-value=0.085 Score=52.37 Aligned_cols=22 Identities=50% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
-+.|.||.|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999985
No 360
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.38 E-value=0.074 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-+.|.||+|+|||||.+.|++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 361
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.37 E-value=0.074 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..-+.|.||+|+|||||.+.+++...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999997653
No 362
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.37 E-value=0.85 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-|+|.|++|+|||+|+..+.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998755
No 363
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.35 E-value=0.37 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..|+|.|.||+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999764
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.31 E-value=0.19 Score=63.10 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
++..-+.|+||+|+|||||++.|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3444589999999999999999998773
No 365
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.28 E-value=0.96 Score=46.94 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHhcCchhHhh-----hCCCCCCeEEEEcCCCCChHHHH
Q 005066 219 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTR-----LGGKLPKGVLLVGPPGTGKTMLA 274 (715)
Q Consensus 219 ~~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~-----lg~~~pkgvLL~GPPGTGKT~LA 274 (715)
+..+|+++.-.+.+.+.|... .+..|..++. +-...++.+++++|+|||||+..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 346899987777776666541 1333333322 11123578999999999999864
No 366
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.19 E-value=0.14 Score=57.84 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~ 283 (715)
+..|+|.|.+|+||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999974
No 367
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.17 E-value=0.56 Score=51.24 Aligned_cols=24 Identities=46% Similarity=0.667 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-++|.||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 359999999999999999998864
No 368
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.14 E-value=0.25 Score=56.06 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh----------CCCeEEeeccchh--hhHhhhhH-------------------------
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFE--EMFVGVGA------------------------- 302 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el----------~~~fi~is~s~~~--~~~vg~~~------------------------- 302 (715)
+-|.||.|+|||||+++|++.. +..+-++....+. ...+.+..
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 376 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH 376 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH
Q ss_pred -------------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEeecCCC
Q 005066 303 -------------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 369 (715)
Q Consensus 303 -------------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~Ld~~~~~~~ViVIaaTN~p 369 (715)
.+-|-.+..+-...|.||++||--.-. .......++..+..+....+..||..|...
T Consensus 377 ~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL----------D~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 377 RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL----------DVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Q ss_pred Ccc
Q 005066 370 ESL 372 (715)
Q Consensus 370 ~~L 372 (715)
+.+
T Consensus 447 ~~~ 449 (538)
T 3ozx_A 447 SIH 449 (538)
T ss_dssp HHH
T ss_pred HHH
No 369
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.14 E-value=1.4 Score=48.70 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh--------CCCeEEeecc
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA--------GVPFFSCSGS 291 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el--------~~~fi~is~s 291 (715)
+.+|+.+|+|+|||..+-..+-.. +...+.+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 469999999999999876665444 5555555543
No 370
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.11 E-value=0.13 Score=47.10 Aligned_cols=21 Identities=57% Similarity=0.987 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~ 279 (715)
-|+|.|+||+|||+|.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999864
No 371
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.09 E-value=0.47 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+..|+|.|++|+|||+|..++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998654
No 372
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.08 E-value=0.067 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||+|+|||||.+.+++..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3358899999999999999999765
No 373
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.08 E-value=0.15 Score=58.36 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-+.|.||+|+|||||++.+++..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34458899999999999999999866
No 374
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.03 E-value=0.19 Score=50.65 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh-------CCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el-------~~~fi~i 288 (715)
+-|.|.||+|+||||+++.|+..+ |.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 358889999999999999999877 5565544
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.99 E-value=0.35 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|+|.|++|+|||+|..++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 369999999999999999998643
No 376
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.97 E-value=0.095 Score=53.17 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
... .-+.|.||+|+|||||.+.+++..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 568899999999999999999754
No 377
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.89 E-value=0.13 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+.|.|++|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 378
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.79 E-value=0.81 Score=46.36 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCChHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAra 276 (715)
+.+|+.+|+|+|||+.+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4699999999999986543
No 379
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.70 E-value=0.12 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 380
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.68 E-value=0.093 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.-+.|.||+|+|||||.+.|++...
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998653
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.65 E-value=0.21 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998863
No 382
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.50 E-value=0.26 Score=49.28 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
++-|.|.|++|+||||+++.++..++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 44688999999999999999999998643
No 383
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.47 E-value=0.089 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999754
No 384
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.44 E-value=0.13 Score=59.36 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=23.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh----CCCeEEeec
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSG 290 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el----~~~fi~is~ 290 (715)
.+++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57899999999999888776654 345555443
No 385
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.40 E-value=0.12 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
..-+.|.||.|+|||||.+.|++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999985
No 386
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.40 E-value=0.093 Score=53.66 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.-+.|.||.|+|||||.+.+++...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999998653
No 387
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.39 E-value=0.11 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.706 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
..-+.|.||.|+|||||.+.+++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335889999999999999999975
No 388
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.38 E-value=0.1 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-+.|.||+|+|||||.+.|++..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34458899999999999999999754
No 389
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.37 E-value=0.15 Score=46.33 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 390
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.33 E-value=0.74 Score=52.18 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCChHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLA 274 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LA 274 (715)
.+.+|+.+|+|+|||+.+
T Consensus 60 ~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEcCCCcHHHHHH
Confidence 457999999999999853
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.31 E-value=0.1 Score=53.82 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
...-+.|.||+|+|||||++.|++...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999998653
No 392
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.30 E-value=0.18 Score=51.45 Aligned_cols=23 Identities=48% Similarity=0.689 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..|.|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.28 E-value=0.17 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
++-|.|.|++|+||||+++.|+..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 394
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.25 E-value=0.11 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||.+.|++..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3458899999999999999999765
No 395
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.24 E-value=0.13 Score=48.82 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
....|++.|++|+|||+|..++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 396
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.22 E-value=0.15 Score=46.75 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|+..+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 397
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.19 E-value=0.57 Score=52.74 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCeEEe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 288 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~fi~i 288 (715)
+.+|+.+|+|+|||+.+..-+-..+...+.+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi 71 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVV 71 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEE
Confidence 4799999999999986554443333333333
No 398
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.18 E-value=0.098 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||.+.+++..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999765
No 399
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.16 E-value=0.094 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||.|+|||||.+.+++..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999865
No 400
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.14 E-value=0.81 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCChHHHH-HHHH
Q 005066 258 KGVLLVGPPGTGKTMLA-RAIA 278 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LA-ralA 278 (715)
+.+|+.||+|+|||+.+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999975 4443
No 401
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.14 E-value=0.14 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVP 284 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~ 284 (715)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999987654
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.12 E-value=0.1 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||+|+|||||.+.|++..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998765
No 403
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.09 E-value=0.16 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 404
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.08 E-value=0.1 Score=52.83 Aligned_cols=24 Identities=46% Similarity=0.571 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||.|+|||||.+.+++..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999765
No 405
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.95 E-value=0.1 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||.|+|||||++.+++..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999999865
No 406
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.95 E-value=1 Score=49.41 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhh-----hCCCCCCeEEEEcCCCCChHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTR-----LGGKLPKGVLLVGPPGTGKTMLA 274 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~-----lg~~~pkgvLL~GPPGTGKT~LA 274 (715)
..+|+++.-.+++.+.|.+. .+..|..++. +-...++.+|+.||+|+|||..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 35788887777776666541 1333332222 11123578999999999999874
No 407
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.94 E-value=0.12 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||.+.|++..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3358899999999999999999765
No 408
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.88 E-value=0.18 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|..++....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 409
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.88 E-value=0.12 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||.+.|++..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3358899999999999999999765
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.79 E-value=0.11 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
+.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999998873
No 411
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.77 E-value=0.11 Score=53.04 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..-+.|.||.|+|||||.+.+++...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33588999999999999999998653
No 412
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.75 E-value=0.2 Score=50.30 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhCC
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEAGV 283 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el~~ 283 (715)
.++-|.|.|++|+|||++++.++..++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456888999999999999999987643
No 413
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.75 E-value=0.83 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhh-----CCCCCCeEEEEcCCCCChHHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRL-----GGKLPKGVLLVGPPGTGKTMLA 274 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~l-----g~~~pkgvLL~GPPGTGKT~LA 274 (715)
-.+|+++.-.+.+.+.|.+. .+..|..++.. -...++.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45789987777776666541 13333333221 1113468999999999999875
No 414
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.73 E-value=0.18 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 415
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.70 E-value=1.2 Score=47.48 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=31.8
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTML 273 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~L 273 (715)
-.+|+++.-.+.+.+.|... .+..|..++... ....+.+++.+|+|+|||+.
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 35699987666666666531 133333333211 11235799999999999974
No 416
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.59 E-value=1.2 Score=44.10 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCChHHHH
Q 005066 258 KGVLLVGPPGTGKTMLA 274 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LA 274 (715)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 47999999999999864
No 417
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.58 E-value=0.2 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|++.|++|+|||+|+.++.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998743
No 418
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.51 E-value=0.11 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||+|+|||||++.+++..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3358899999999999999999865
No 419
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.50 E-value=0.2 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 420
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.39 E-value=0.16 Score=54.87 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 347899999999999999999865
No 421
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.39 E-value=0.12 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~ 282 (715)
.-+.|.||.|+|||||.+.|++...
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3588999999999999999998653
No 422
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.34 E-value=0.16 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 347899999999999999999865
No 423
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.34 E-value=0.21 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 424
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.34 E-value=0.12 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhC
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAG 282 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~ 282 (715)
..-+.|.||.|+|||||.+.+++...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33588999999999999999998653
No 425
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.25 E-value=0.2 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
-+.|.|+||+|||+|.+.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 426
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.18 E-value=0.16 Score=54.97 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347899999999999999999865
No 427
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.18 E-value=0.23 Score=62.34 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+-|+||+|+|||||++.|.+-.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 348899999999999999998865
No 428
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.18 E-value=0.21 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|...+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 429
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.15 E-value=0.15 Score=54.94 Aligned_cols=24 Identities=50% Similarity=0.725 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999865
No 430
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.07 E-value=0.21 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 431
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.07 E-value=0.22 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999865
No 432
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.06 E-value=0.21 Score=46.12 Aligned_cols=22 Identities=55% Similarity=0.866 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|+|.|+||+|||+|++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999753
No 433
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.04 E-value=0.22 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|++.|++|+|||+|+..+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998743
No 434
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.01 E-value=0.18 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~ 279 (715)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 435
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.92 E-value=0.41 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHH
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~e 280 (715)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998754
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.90 E-value=0.23 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 437
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.89 E-value=0.37 Score=49.09 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|.|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999765
No 438
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.84 E-value=0.24 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 439
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.72 E-value=0.24 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 440
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.21 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 441
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.70 E-value=0.17 Score=54.88 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 358899999999999999999865
No 442
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.66 E-value=0.53 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458888999999999999999875
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.65 E-value=0.21 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
-|+|.|++|+|||+|.+.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 444
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.58 E-value=0.26 Score=45.64 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~ 279 (715)
+..|++.|++|+|||+|..++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44699999999999999999976
No 445
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.56 E-value=0.26 Score=46.99 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 446
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.55 E-value=1.2 Score=44.65 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
+..|+|.|+||+|||+|..++.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998643
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.53 E-value=0.27 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 448
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.53 E-value=0.14 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999999865
No 449
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.52 E-value=0.24 Score=45.48 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~ 279 (715)
-|++.|+||+|||+|+..+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 450
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.47 E-value=0.26 Score=47.25 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
...|+|.|++|+|||+|+..+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999764
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.46 E-value=0.24 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
.-+.|.||.|+||||+++.|++. +..+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 34789999999999999999987 4433
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.44 E-value=0.17 Score=52.14 Aligned_cols=25 Identities=48% Similarity=0.800 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el 281 (715)
..-+.|.||.|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 453
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.40 E-value=1.4 Score=52.12 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHh---CCCeEEeecc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 291 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el---~~~fi~is~s 291 (715)
..|.++|+.||+|+|||..+-..+-.. |...+.+...
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 345689999999999999876554433 6556555543
No 454
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.38 E-value=0.22 Score=59.18 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999888776654
No 455
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.32 E-value=0.25 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|+.++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 456
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.31 E-value=0.27 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|++.|++|+|||+|++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998754
No 457
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.28 E-value=0.26 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
-.|++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 458
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.28 E-value=0.48 Score=47.39 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh--CCCeEEee
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEA--GVPFFSCS 289 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el--~~~fi~is 289 (715)
+..+++.|.+|+|||+++..++..+ |.....++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4458899999999999999998765 44444444
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.25 E-value=0.29 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
+-|.|.|++|+||||+++.|+..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999877
No 460
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.22 E-value=0.3 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 461
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.17 E-value=0.27 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 462
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.15 E-value=0.24 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|+..+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 463
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.04 E-value=0.18 Score=52.71 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||.|+|||||.+.|++..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 348899999999999999999754
No 464
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.03 E-value=0.28 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|+..+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 59999999999999999998643
No 465
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.02 E-value=0.26 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|.+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 466
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.01 E-value=0.2 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 256 LPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 256 ~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
...-+.|.||+|+|||||.+.|++..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33458899999999999999999754
No 467
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.00 E-value=1.5 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|+|.|++|+|||+|+.++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999853
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.99 E-value=0.42 Score=48.68 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|+|.|+||+|||+|..++.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999763
No 469
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.97 E-value=0.29 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|++.|++|+|||+|+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 470
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.96 E-value=0.29 Score=46.42 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|+|.|++|+|||+|+..+.+.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998743
No 471
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.88 E-value=0.29 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|+.++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.87 E-value=0.38 Score=50.61 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-++|+|+.|+||||+.+.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999764
No 473
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.78 E-value=0.28 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~e 280 (715)
..|++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 474
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.76 E-value=1.9 Score=48.01 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCChHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARA 276 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAra 276 (715)
++.+|+.+|+|+|||+.+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 46899999999999987443
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.73 E-value=0.27 Score=54.67 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHHh
Q 005066 254 GKLPKGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 254 ~~~pkgvLL~GPPGTGKT~LAralA~el 281 (715)
.....-+.|.||.|+|||||+|.|++.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3344459999999999999999999865
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.66 E-value=0.47 Score=46.77 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh--CCCeEEe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA--GVPFFSC 288 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el--~~~fi~i 288 (715)
=|.|.|+.|+||||+++.|+..+ |.+++.+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 47889999999999999999987 5565544
No 477
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.65 E-value=0.27 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~ 279 (715)
.|++.|++|+|||+|+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999965
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.65 E-value=0.29 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|++.|++|+|||+|++.+.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998643
No 479
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.63 E-value=0.31 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999888754
No 480
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.61 E-value=2.4 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
+..+++.|+||+|||+|..++++.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446999999999999999999864
No 481
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.55 E-value=0.14 Score=55.02 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
.-+.|.||+|+|||||.+.|++..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999999865
No 482
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=87.52 E-value=0.82 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|.|.|+||+|||+|.+++.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999864
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.51 E-value=0.33 Score=51.35 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
.+|+||.|++|+|||++|.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 458999999999999999999874 4444
No 484
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.45 E-value=0.35 Score=46.21 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~ 279 (715)
.....|++.|++|+|||+|+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3344699999999999999999864
No 485
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.44 E-value=0.29 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHH
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAG 279 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~ 279 (715)
+.+..|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999999999863
No 486
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.40 E-value=0.33 Score=45.08 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|++.|++|+|||+|...+.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 369999999999999999998643
No 487
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.40 E-value=0.31 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
-.+|+||.|+|||++..||.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998654
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.37 E-value=0.22 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCCCe
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEAGVPF 285 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el~~~f 285 (715)
-|.|+|++|+|||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999999888775
No 489
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.37 E-value=0.31 Score=51.56 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhCCCeE
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGEAGVPFF 286 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~el~~~fi 286 (715)
.+|+||.|++|+|||++|-.+.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 46899999999999999988865 454443
No 490
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.32 E-value=0.33 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|+|.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 491
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.31 E-value=0.29 Score=48.51 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhCCC-eEEeeccc
Q 005066 255 KLPKGVLLVGPPGTGKTMLARAIAGEAGVP-FFSCSGSE 292 (715)
Q Consensus 255 ~~pkgvLL~GPPGTGKT~LAralA~el~~~-fi~is~s~ 292 (715)
.+++-|+|+|.||+||+++|+.+...++.. +..++.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 455678999999999999999998877532 33445444
No 492
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.30 E-value=0.33 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q 005066 259 GVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~e 280 (715)
.|++.|++|+|||+|...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 493
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.25 E-value=0.54 Score=45.98 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCeEEee
Q 005066 260 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 289 (715)
Q Consensus 260 vLL~GPPGTGKT~LAralA~el---~~~fi~is 289 (715)
|.|.|+-|+||||.++.|+..+ |.+++.+.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999877 67776653
No 494
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.23 E-value=0.2 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH
Q 005066 257 PKGVLLVGPPGTGKTMLARAIAGE 280 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~LAralA~e 280 (715)
..-+.|.|++|+|||+|.+++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999998753
No 495
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.17 E-value=3.8 Score=50.69 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHhcCchhHhhhCCCCCCeEEEEcCCCCChHHHHHHHHHH---hCCCeEEeec
Q 005066 229 VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSG 290 (715)
Q Consensus 229 ~d~~k~eL~eiv~~L~~~~~~~~lg~~~pkgvLL~GPPGTGKT~LAralA~e---l~~~fi~is~ 290 (715)
.+.+++.+..+...+.. ..|..+|++||+|+|||..+-..+-. .+...+.+..
T Consensus 605 t~~Q~~ai~~il~~~~~---------g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQ---------PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp CHHHHHHHHHHHHHHHS---------SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhc---------CCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34455555555543321 23568999999999999876544322 2555555544
No 496
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.10 E-value=0.34 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q 005066 259 GVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 259 gvLL~GPPGTGKT~LAralA~el 281 (715)
.|+|.|++|+|||+|+.++.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 497
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.10 E-value=3.6 Score=46.01 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCChHHH
Q 005066 257 PKGVLLVGPPGTGKTML 273 (715)
Q Consensus 257 pkgvLL~GPPGTGKT~L 273 (715)
.+.+|+.+|+|+|||+.
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 35799999999999985
No 498
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.08 E-value=1.4 Score=48.00 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHhcCchhHhhhC---CCCCCeEEEEcCCCCChHHH
Q 005066 220 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTML 273 (715)
Q Consensus 220 ~~~f~dv~G~d~~k~eL~eiv~~L~~~~~~~~lg---~~~pkgvLL~GPPGTGKT~L 273 (715)
-.+|+++.-.+.+.+.|.+. .+..|..++... ....+.+++.+|+|+|||+.
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 35799987666666665431 133343333221 11235799999999999984
No 499
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.97 E-value=1.3 Score=54.57 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005066 258 KGVLLVGPPGTGKTMLARAIA 278 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA 278 (715)
+.+|+.+|+|+|||+++-..+
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~i 114 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMTA 114 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHH
Confidence 479999999999999654443
No 500
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.92 E-value=0.36 Score=45.59 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHh
Q 005066 258 KGVLLVGPPGTGKTMLARAIAGEA 281 (715)
Q Consensus 258 kgvLL~GPPGTGKT~LAralA~el 281 (715)
..|+|.|++|+|||+|+.++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
Done!