Query 005071
Match_columns 715
No_of_seqs 409 out of 2023
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2337 Ubiquitin activating E 100.0 7E-179 2E-183 1434.4 45.5 661 12-707 5-668 (669)
2 TIGR01381 E1_like_apg7 E1-like 100.0 3E-171 6E-176 1437.6 62.9 656 17-711 1-664 (664)
3 cd01486 Apg7 Apg7 is an E1-lik 100.0 1E-86 2.2E-91 699.0 31.2 305 366-688 1-307 (307)
4 KOG2017 Molybdopterin synthase 100.0 1.5E-49 3.3E-54 415.4 15.5 239 343-659 42-287 (427)
5 TIGR02355 moeB molybdopterin s 100.0 5.1E-44 1.1E-48 369.6 25.5 234 346-656 3-240 (240)
6 PRK07411 hypothetical protein; 100.0 5.1E-44 1.1E-48 393.1 26.5 236 345-659 16-258 (390)
7 PRK05690 molybdopterin biosynt 100.0 9.6E-43 2.1E-47 361.1 25.9 228 346-653 11-245 (245)
8 PRK12475 thiamine/molybdopteri 100.0 7.5E-43 1.6E-47 377.1 26.0 261 345-691 2-269 (338)
9 PRK07688 thiamine/molybdopteri 100.0 1.6E-42 3.5E-47 374.7 26.4 238 345-659 2-246 (339)
10 PRK05597 molybdopterin biosynt 100.0 1.9E-42 4.1E-47 376.5 25.2 233 345-656 6-245 (355)
11 PRK08223 hypothetical protein; 100.0 5.7E-42 1.2E-46 360.3 25.2 233 343-647 5-266 (287)
12 PRK05600 thiamine biosynthesis 100.0 6.4E-42 1.4E-46 373.9 25.5 239 345-659 19-264 (370)
13 PRK07878 molybdopterin biosynt 100.0 8E-42 1.7E-46 376.1 26.2 234 346-654 21-261 (392)
14 PRK08762 molybdopterin biosynt 100.0 1.8E-40 4E-45 363.5 26.1 239 346-659 114-359 (376)
15 PRK08328 hypothetical protein; 100.0 9.2E-40 2E-44 336.1 24.2 221 346-645 8-231 (231)
16 cd00757 ThiF_MoeB_HesA_family 100.0 2E-39 4.4E-44 332.5 23.9 221 347-645 1-228 (228)
17 TIGR02356 adenyl_thiF thiazole 100.0 9.8E-39 2.1E-43 322.1 19.8 195 347-600 1-202 (202)
18 COG0476 ThiF Dinucleotide-util 100.0 1.4E-37 3E-42 323.3 22.2 236 346-657 9-253 (254)
19 TIGR03603 cyclo_dehy_ocin bact 100.0 1.1E-36 2.5E-41 326.5 19.6 230 346-667 53-305 (318)
20 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4.6E-34 1E-38 287.3 21.8 172 346-601 2-175 (197)
21 cd01485 E1-1_like Ubiquitin ac 100.0 1E-33 2.2E-38 285.0 21.6 190 347-639 1-194 (198)
22 PRK08644 thiamine biosynthesis 100.0 8.9E-33 1.9E-37 281.0 20.1 189 354-602 18-208 (212)
23 cd01488 Uba3_RUB Ubiquitin act 100.0 1.6E-31 3.4E-36 282.8 24.7 131 366-517 1-140 (291)
24 TIGR02354 thiF_fam2 thiamine b 100.0 2.2E-30 4.7E-35 261.4 19.5 190 349-600 7-200 (200)
25 PRK14852 hypothetical protein; 100.0 2.9E-30 6.3E-35 304.4 22.9 162 336-517 303-468 (989)
26 cd01487 E1_ThiF_like E1_ThiF_l 100.0 2.6E-30 5.7E-35 255.3 18.7 172 366-597 1-174 (174)
27 cd01484 E1-2_like Ubiquitin ac 100.0 2.8E-30 6.1E-35 266.2 19.6 133 366-516 1-134 (234)
28 PRK14851 hypothetical protein; 100.0 6.9E-30 1.5E-34 296.8 22.1 154 344-517 22-179 (679)
29 PRK07877 hypothetical protein; 100.0 7.5E-30 1.6E-34 297.4 19.6 146 345-513 87-234 (722)
30 PF00899 ThiF: ThiF family; I 100.0 5.6E-29 1.2E-33 235.0 18.5 133 363-515 1-134 (135)
31 cd01491 Ube1_repeat1 Ubiquitin 100.0 3.5E-29 7.6E-34 264.5 17.1 146 348-517 2-149 (286)
32 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.4E-29 1.4E-33 265.4 17.7 133 366-517 1-134 (312)
33 TIGR01408 Ube1 ubiquitin-activ 100.0 2.3E-28 5E-33 293.8 21.7 191 309-517 354-562 (1008)
34 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.7E-27 5.9E-32 261.9 20.8 179 366-601 1-187 (435)
35 KOG2015 NEDD8-activating compl 99.9 5.1E-27 1.1E-31 244.5 17.2 138 358-516 34-182 (422)
36 KOG2013 SMT3/SUMO-activating c 99.9 8.9E-28 1.9E-32 260.3 10.1 139 359-516 7-146 (603)
37 cd01483 E1_enzyme_family Super 99.9 1.1E-26 2.4E-31 221.1 16.5 132 366-517 1-133 (143)
38 cd00755 YgdL_like Family of ac 99.9 9.5E-27 2.1E-31 239.6 15.5 131 355-505 2-133 (231)
39 PRK15116 sulfur acceptor prote 99.9 1.5E-26 3.2E-31 242.6 16.1 141 345-505 10-152 (268)
40 KOG2336 Molybdopterin biosynth 99.9 1.9E-26 4.1E-31 236.3 16.1 262 337-681 52-334 (422)
41 cd01493 APPBP1_RUB Ubiquitin a 99.9 1.5E-25 3.3E-30 248.6 16.4 155 346-518 1-157 (425)
42 TIGR01408 Ube1 ubiquitin-activ 99.9 9.1E-25 2E-29 262.9 18.4 149 346-518 5-157 (1008)
43 PRK06153 hypothetical protein; 99.9 8.7E-25 1.9E-29 237.3 15.0 128 359-509 171-301 (393)
44 COG1179 Dinucleotide-utilizing 99.9 6.5E-25 1.4E-29 223.1 12.6 141 345-505 10-152 (263)
45 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 6.6E-24 1.4E-28 219.8 18.1 190 362-602 9-220 (244)
46 KOG2012 Ubiquitin activating e 99.9 4.4E-23 9.5E-28 234.7 5.5 189 310-517 365-575 (1013)
47 PTZ00245 ubiquitin activating 99.8 3.8E-21 8.3E-26 197.5 11.3 98 345-446 6-104 (287)
48 KOG2018 Predicted dinucleotide 99.8 3.2E-20 6.9E-25 193.4 10.0 133 353-505 63-196 (430)
49 KOG2014 SMT3/SUMO-activating c 99.8 6.7E-19 1.4E-23 183.3 13.3 155 343-518 9-165 (331)
50 TIGR03693 ocin_ThiF_like putat 99.7 6.6E-16 1.4E-20 175.3 19.8 170 359-601 124-300 (637)
51 KOG2012 Ubiquitin activating e 99.7 7.2E-17 1.6E-21 184.6 11.5 153 342-519 15-169 (1013)
52 KOG2016 NEDD8-activating compl 99.6 5E-16 1.1E-20 168.3 8.0 153 345-515 7-161 (523)
53 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.2 8.3E-12 1.8E-16 109.6 4.6 79 553-659 2-83 (84)
54 PF01488 Shikimate_DH: Shikima 98.1 1.3E-05 2.8E-10 76.3 8.9 81 360-487 8-88 (135)
55 COG1748 LYS9 Saccharopine dehy 98.1 1.8E-05 3.8E-10 87.8 11.0 98 365-506 2-99 (389)
56 PRK12549 shikimate 5-dehydroge 98.0 2.8E-05 6.1E-10 83.1 9.5 77 362-483 125-201 (284)
57 COG4015 Predicted dinucleotide 97.6 0.00029 6.2E-09 69.0 8.9 117 364-505 18-140 (217)
58 PF03435 Saccharop_dh: Sacchar 97.6 0.00033 7.2E-09 77.4 10.2 96 367-505 1-97 (386)
59 PRK12548 shikimate 5-dehydroge 97.5 0.00043 9.2E-09 74.2 10.4 85 362-483 124-208 (289)
60 PRK14027 quinate/shikimate deh 97.4 0.00061 1.3E-08 73.0 9.4 53 362-436 125-177 (283)
61 TIGR01809 Shik-DH-AROM shikima 97.3 0.00083 1.8E-08 71.8 8.4 78 362-484 123-200 (282)
62 PRK12749 quinate/shikimate deh 97.2 0.0011 2.4E-08 71.2 9.2 54 362-434 122-175 (288)
63 PRK06718 precorrin-2 dehydroge 97.2 0.0022 4.8E-08 65.4 10.2 94 361-505 7-100 (202)
64 PF13241 NAD_binding_7: Putati 97.1 0.00086 1.9E-08 60.9 6.1 88 361-505 4-91 (103)
65 COG0169 AroE Shikimate 5-dehyd 97.0 0.0016 3.5E-08 69.8 7.5 53 362-436 124-176 (283)
66 COG0373 HemA Glutamyl-tRNA red 97.0 0.0021 4.6E-08 72.1 8.2 76 361-486 175-250 (414)
67 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0059 1.3E-07 66.2 11.2 84 362-495 176-259 (311)
68 PRK00258 aroE shikimate 5-dehy 96.9 0.003 6.5E-08 67.2 8.3 36 361-396 120-155 (278)
69 PRK13940 glutamyl-tRNA reducta 96.9 0.0028 6.1E-08 71.4 8.3 77 361-486 178-254 (414)
70 TIGR01470 cysG_Nterm siroheme 96.8 0.0088 1.9E-07 61.2 10.4 94 362-505 7-100 (205)
71 TIGR01035 hemA glutamyl-tRNA r 96.8 0.007 1.5E-07 68.2 10.4 36 361-396 177-212 (417)
72 TIGR03882 cyclo_dehyd_2 bacter 96.8 0.00056 1.2E-08 69.3 1.5 52 358-409 99-160 (193)
73 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.011 2.5E-07 59.1 10.0 84 361-486 25-109 (194)
74 PF03807 F420_oxidored: NADP o 96.6 0.017 3.6E-07 51.0 10.0 90 366-506 1-94 (96)
75 PRK06719 precorrin-2 dehydroge 96.6 0.017 3.7E-07 56.7 10.3 85 361-498 10-94 (157)
76 cd01065 NAD_bind_Shikimate_DH 96.5 0.0087 1.9E-07 57.1 7.9 35 362-396 17-51 (155)
77 COG1086 Predicted nucleoside-d 96.5 0.0098 2.1E-07 68.6 9.4 122 320-483 208-334 (588)
78 COG0569 TrkA K+ transport syst 96.4 0.03 6.5E-07 58.1 11.4 96 365-505 1-98 (225)
79 PLN00203 glutamyl-tRNA reducta 96.3 0.012 2.6E-07 68.2 8.9 78 362-486 264-341 (519)
80 PRK00045 hemA glutamyl-tRNA re 96.3 0.026 5.7E-07 63.8 11.0 35 362-396 180-214 (423)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0077 1.7E-07 58.7 5.6 102 366-509 1-106 (157)
82 PLN02819 lysine-ketoglutarate 96.2 0.029 6.2E-07 69.7 11.7 99 362-505 567-678 (1042)
83 cd05291 HicDH_like L-2-hydroxy 96.2 0.021 4.5E-07 61.7 9.4 32 365-396 1-33 (306)
84 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.016 3.5E-07 57.6 7.7 35 361-396 41-76 (168)
85 PRK05562 precorrin-2 dehydroge 96.1 0.044 9.6E-07 57.0 10.9 95 361-505 22-116 (223)
86 PF01113 DapB_N: Dihydrodipico 96.0 0.047 1E-06 51.3 9.6 99 366-510 2-102 (124)
87 PRK14982 acyl-ACP reductase; P 96.0 0.021 4.5E-07 62.9 8.1 36 361-396 152-189 (340)
88 PRK15469 ghrA bifunctional gly 95.9 0.052 1.1E-06 59.1 10.8 92 360-507 132-227 (312)
89 TIGR00518 alaDH alanine dehydr 95.8 0.064 1.4E-06 59.7 11.3 36 361-397 164-199 (370)
90 PRK08618 ornithine cyclodeamin 95.8 0.044 9.6E-07 59.8 9.7 94 363-505 126-220 (325)
91 cd05311 NAD_bind_2_malic_enz N 95.8 0.011 2.5E-07 61.2 4.9 37 361-397 22-60 (226)
92 PLN02928 oxidoreductase family 95.8 0.026 5.7E-07 62.2 8.0 104 360-506 155-262 (347)
93 PRK09242 tropinone reductase; 95.7 0.056 1.2E-06 55.6 9.8 91 361-483 6-97 (257)
94 TIGR02992 ectoine_eutC ectoine 95.7 0.045 9.7E-07 59.8 9.2 77 363-485 128-205 (326)
95 PRK05476 S-adenosyl-L-homocyst 95.7 0.055 1.2E-06 61.3 10.0 36 361-397 209-244 (425)
96 PRK06197 short chain dehydroge 95.6 0.05 1.1E-06 57.9 9.1 36 360-396 12-48 (306)
97 PRK07063 short chain dehydroge 95.6 0.088 1.9E-06 54.3 10.6 63 361-446 4-67 (260)
98 PRK06141 ornithine cyclodeamin 95.5 0.057 1.2E-06 58.7 9.2 76 363-485 124-200 (314)
99 PRK00094 gpsA NAD(P)H-dependen 95.5 0.071 1.5E-06 57.2 9.7 31 366-397 3-33 (325)
100 PRK07062 short chain dehydroge 95.4 0.086 1.9E-06 54.5 9.8 62 362-446 6-68 (265)
101 PRK07831 short chain dehydroge 95.4 0.081 1.7E-06 54.7 9.5 36 360-396 13-50 (262)
102 PF02737 3HCDH_N: 3-hydroxyacy 95.4 0.0065 1.4E-07 60.8 1.3 34 366-400 1-34 (180)
103 PF03949 Malic_M: Malic enzyme 95.3 0.056 1.2E-06 57.3 8.2 104 360-505 21-139 (255)
104 PRK07634 pyrroline-5-carboxyla 95.3 0.14 3E-06 52.9 11.0 96 363-509 3-102 (245)
105 PRK05854 short chain dehydroge 95.3 0.077 1.7E-06 57.1 9.4 64 360-446 10-74 (313)
106 PRK14106 murD UDP-N-acetylmura 95.3 0.08 1.7E-06 59.7 9.9 95 362-504 3-97 (450)
107 PRK07231 fabG 3-ketoacyl-(acyl 95.3 0.081 1.7E-06 53.8 9.0 35 362-397 3-38 (251)
108 PRK05875 short chain dehydroge 95.2 0.12 2.6E-06 53.7 10.4 34 362-396 5-39 (276)
109 PRK00066 ldh L-lactate dehydro 95.2 0.093 2E-06 57.2 9.6 34 363-396 5-39 (315)
110 PRK12550 shikimate 5-dehydroge 95.2 0.12 2.6E-06 55.3 10.2 34 364-397 122-155 (272)
111 TIGR02853 spore_dpaA dipicolin 95.2 0.067 1.4E-06 57.6 8.3 35 361-396 148-182 (287)
112 PRK11880 pyrroline-5-carboxyla 95.2 0.11 2.5E-06 54.3 9.9 89 365-505 3-93 (267)
113 PF00056 Ldh_1_N: lactate/mala 95.1 0.04 8.6E-07 53.0 5.9 77 365-484 1-79 (141)
114 TIGR01915 npdG NADPH-dependent 95.1 0.18 3.9E-06 51.7 11.0 99 366-509 2-104 (219)
115 PRK07574 formate dehydrogenase 95.1 0.099 2.2E-06 58.6 9.7 93 360-506 188-284 (385)
116 PRK08291 ectoine utilization p 95.1 0.094 2E-06 57.4 9.3 78 363-486 131-209 (330)
117 PRK09186 flagellin modificatio 95.1 0.13 2.9E-06 52.5 9.9 33 362-395 2-35 (256)
118 PRK06436 glycerate dehydrogena 95.0 0.07 1.5E-06 57.9 8.1 36 360-396 118-153 (303)
119 cd05312 NAD_bind_1_malic_enz N 95.0 0.11 2.5E-06 55.7 9.5 104 360-505 21-138 (279)
120 PRK13243 glyoxylate reductase; 95.0 0.068 1.5E-06 58.6 8.0 36 360-396 146-181 (333)
121 PRK06522 2-dehydropantoate 2-r 95.0 0.14 3E-06 54.3 10.1 30 366-396 2-31 (304)
122 PRK07340 ornithine cyclodeamin 95.0 0.08 1.7E-06 57.3 8.4 77 362-486 123-200 (304)
123 cd00401 AdoHcyase S-adenosyl-L 95.0 0.14 2.9E-06 58.0 10.3 36 361-397 199-234 (413)
124 COG1648 CysG Siroheme synthase 95.0 0.057 1.2E-06 55.7 6.7 95 361-505 9-103 (210)
125 PRK12491 pyrroline-5-carboxyla 94.9 0.19 4.1E-06 53.6 10.9 93 364-508 2-99 (272)
126 PRK07523 gluconate 5-dehydroge 94.9 0.14 3.1E-06 52.5 9.7 35 361-396 7-42 (255)
127 PF02719 Polysacc_synt_2: Poly 94.9 0.056 1.2E-06 58.3 6.9 80 367-484 1-87 (293)
128 TIGR00507 aroE shikimate 5-deh 94.9 0.2 4.3E-06 53.1 10.8 35 362-397 115-149 (270)
129 cd00762 NAD_bind_malic_enz NAD 94.9 0.11 2.4E-06 55.0 8.6 105 360-505 21-139 (254)
130 PRK06932 glycerate dehydrogena 94.8 0.075 1.6E-06 57.9 7.7 88 360-507 143-234 (314)
131 KOG0069 Glyoxylate/hydroxypyru 94.8 0.11 2.4E-06 57.1 8.8 94 360-508 158-255 (336)
132 PRK06194 hypothetical protein; 94.8 0.16 3.4E-06 53.2 9.7 35 361-396 3-38 (287)
133 COG0111 SerA Phosphoglycerate 94.8 0.075 1.6E-06 58.2 7.5 94 360-508 138-235 (324)
134 PLN02780 ketoreductase/ oxidor 94.8 0.17 3.6E-06 55.0 10.2 62 362-446 51-113 (320)
135 PRK06130 3-hydroxybutyryl-CoA 94.7 0.15 3.2E-06 54.9 9.6 31 365-396 5-35 (311)
136 PRK08410 2-hydroxyacid dehydro 94.7 0.085 1.8E-06 57.4 7.7 89 360-507 141-233 (311)
137 PRK06487 glycerate dehydrogena 94.7 0.09 2E-06 57.3 7.9 87 360-507 144-234 (317)
138 TIGR00936 ahcY adenosylhomocys 94.7 0.16 3.5E-06 57.3 10.0 35 362-397 193-227 (406)
139 cd05191 NAD_bind_amino_acid_DH 94.7 0.055 1.2E-06 47.4 5.1 36 361-396 20-55 (86)
140 TIGR03589 PseB UDP-N-acetylglu 94.7 0.19 4.1E-06 54.4 10.2 36 362-397 2-39 (324)
141 cd01075 NAD_bind_Leu_Phe_Val_D 94.6 0.28 6E-06 50.0 10.7 37 360-397 24-60 (200)
142 PRK14619 NAD(P)H-dependent gly 94.6 0.19 4.1E-06 54.2 9.9 33 364-397 4-36 (308)
143 PRK13394 3-hydroxybutyrate deh 94.5 0.23 5E-06 50.8 10.1 35 361-396 4-39 (262)
144 PRK08217 fabG 3-ketoacyl-(acyl 94.5 0.17 3.7E-06 51.4 9.0 34 362-396 3-37 (253)
145 cd05290 LDH_3 A subgroup of L- 94.5 0.16 3.4E-06 55.3 9.2 31 366-396 1-32 (307)
146 PRK13403 ketol-acid reductoiso 94.5 0.28 6.1E-06 53.8 11.0 38 357-395 9-46 (335)
147 PRK05866 short chain dehydroge 94.5 0.22 4.9E-06 53.0 10.1 36 360-396 36-72 (293)
148 PRK06476 pyrroline-5-carboxyla 94.5 0.18 4E-06 52.8 9.3 23 366-388 2-24 (258)
149 cd05293 LDH_1 A subgroup of L- 94.4 0.14 3E-06 55.8 8.5 33 364-396 3-36 (312)
150 PRK00048 dihydrodipicolinate r 94.4 0.28 6.1E-06 51.8 10.5 92 365-510 2-95 (257)
151 PLN03209 translocon at the inn 94.4 0.48 1E-05 55.7 13.2 36 360-396 76-112 (576)
152 PLN02688 pyrroline-5-carboxyla 94.3 0.3 6.5E-06 51.2 10.5 23 366-388 2-24 (266)
153 KOG4169 15-hydroxyprostaglandi 94.3 0.11 2.3E-06 54.3 6.8 88 362-482 3-91 (261)
154 PRK07680 late competence prote 94.3 0.24 5.2E-06 52.4 9.8 31 366-396 2-35 (273)
155 PLN03139 formate dehydrogenase 94.3 0.16 3.4E-06 57.0 8.8 36 360-396 195-230 (386)
156 PRK08293 3-hydroxybutyryl-CoA 94.3 0.27 5.9E-06 52.4 10.3 32 365-397 4-35 (287)
157 PRK12480 D-lactate dehydrogena 94.3 0.22 4.9E-06 54.6 9.8 36 360-396 142-177 (330)
158 PRK08339 short chain dehydroge 94.2 0.28 6E-06 51.2 10.0 34 362-396 6-40 (263)
159 PRK12429 3-hydroxybutyrate deh 94.2 0.32 6.9E-06 49.6 10.3 34 362-396 2-36 (258)
160 PRK04148 hypothetical protein; 94.2 0.4 8.7E-06 46.2 10.2 99 363-511 16-114 (134)
161 PRK07478 short chain dehydroge 94.2 0.28 6E-06 50.4 9.8 35 361-396 3-38 (254)
162 PRK05867 short chain dehydroge 94.2 0.33 7.1E-06 49.9 10.3 34 362-396 7-41 (253)
163 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.29 6.3E-06 49.6 9.8 36 361-397 3-39 (251)
164 PRK06949 short chain dehydroge 94.1 0.25 5.4E-06 50.6 9.3 34 362-396 7-41 (258)
165 PRK12939 short chain dehydroge 94.0 0.39 8.4E-06 48.7 10.4 34 362-396 5-39 (250)
166 PRK05708 2-dehydropantoate 2-r 94.0 0.33 7.1E-06 52.5 10.3 33 364-397 2-34 (305)
167 PRK08277 D-mannonate oxidoredu 94.0 0.37 8.1E-06 50.2 10.4 36 361-397 7-43 (278)
168 PRK15438 erythronate-4-phospha 94.0 0.15 3.2E-06 57.1 7.7 56 334-396 92-147 (378)
169 PLN02427 UDP-apiose/xylose syn 94.0 0.37 8E-06 53.2 10.8 39 358-396 8-47 (386)
170 PRK08251 short chain dehydroge 93.9 0.34 7.3E-06 49.4 9.8 60 364-446 2-62 (248)
171 PRK15409 bifunctional glyoxyla 93.9 0.16 3.4E-06 55.6 7.7 92 360-507 141-237 (323)
172 PLN02602 lactate dehydrogenase 93.9 0.21 4.6E-06 55.3 8.6 32 365-396 38-70 (350)
173 PTZ00142 6-phosphogluconate de 93.9 0.38 8.3E-06 55.3 10.9 120 365-506 2-126 (470)
174 PF00106 adh_short: short chai 93.8 0.3 6.6E-06 46.5 8.7 91 365-486 1-92 (167)
175 PRK06138 short chain dehydroge 93.8 0.41 8.9E-06 48.7 10.2 34 362-396 3-37 (252)
176 PTZ00075 Adenosylhomocysteinas 93.8 0.23 4.9E-06 57.1 8.9 36 361-397 251-286 (476)
177 PRK12384 sorbitol-6-phosphate 93.8 0.38 8.2E-06 49.5 9.9 32 364-396 2-34 (259)
178 PRK09260 3-hydroxybutyryl-CoA 93.8 0.094 2E-06 55.9 5.5 33 365-398 2-34 (288)
179 PRK12921 2-dehydropantoate 2-r 93.8 0.23 5E-06 52.8 8.4 30 366-396 2-31 (305)
180 cd00300 LDH_like L-lactate deh 93.7 0.26 5.7E-06 53.2 8.9 74 367-484 1-76 (300)
181 PLN02306 hydroxypyruvate reduc 93.7 0.16 3.5E-06 56.9 7.5 106 360-506 161-272 (386)
182 PLN02494 adenosylhomocysteinas 93.7 0.26 5.5E-06 56.6 9.0 35 362-397 252-286 (477)
183 PRK13304 L-aspartate dehydroge 93.7 0.35 7.6E-06 51.3 9.6 33 365-397 2-36 (265)
184 PRK14618 NAD(P)H-dependent gly 93.7 0.33 7.1E-06 52.7 9.6 31 365-396 5-35 (328)
185 PRK07576 short chain dehydroge 93.7 0.3 6.6E-06 50.8 9.0 37 360-397 5-42 (264)
186 PF13460 NAD_binding_10: NADH( 93.7 0.81 1.8E-05 44.5 11.5 86 367-501 1-91 (183)
187 PF02558 ApbA: Ketopantoate re 93.6 0.18 3.8E-06 48.1 6.6 30 367-397 1-30 (151)
188 PRK07679 pyrroline-5-carboxyla 93.6 0.55 1.2E-05 49.9 11.0 25 364-388 3-27 (279)
189 PTZ00345 glycerol-3-phosphate 93.6 0.36 7.9E-06 53.8 9.9 112 363-510 10-133 (365)
190 PRK07819 3-hydroxybutyryl-CoA 93.6 0.056 1.2E-06 57.9 3.4 32 365-397 6-37 (286)
191 PRK01438 murD UDP-N-acetylmura 93.6 0.33 7.2E-06 55.4 9.8 36 361-397 13-48 (480)
192 PRK07326 short chain dehydroge 93.6 0.41 8.9E-06 48.3 9.5 34 362-396 4-38 (237)
193 PRK12439 NAD(P)H-dependent gly 93.6 0.5 1.1E-05 51.9 10.9 106 365-510 8-115 (341)
194 TIGR03206 benzo_BadH 2-hydroxy 93.5 0.33 7.3E-06 49.3 8.8 34 362-396 1-35 (250)
195 PRK05876 short chain dehydroge 93.5 0.34 7.4E-06 51.0 9.1 35 361-396 3-38 (275)
196 PF01118 Semialdhyde_dh: Semia 93.4 0.47 1E-05 44.1 8.9 39 472-511 64-104 (121)
197 PRK06172 short chain dehydroge 93.4 0.34 7.3E-06 49.7 8.8 34 362-396 5-39 (253)
198 PLN02240 UDP-glucose 4-epimera 93.4 0.44 9.5E-06 51.4 10.0 34 362-396 3-37 (352)
199 PRK10637 cysG siroheme synthas 93.4 0.46 9.9E-06 54.4 10.5 95 361-505 9-103 (457)
200 PRK06928 pyrroline-5-carboxyla 93.4 0.55 1.2E-05 50.0 10.6 94 366-509 3-101 (277)
201 PF02254 TrkA_N: TrkA-N domain 93.4 0.71 1.5E-05 41.9 9.9 86 367-499 1-87 (116)
202 PF00070 Pyr_redox: Pyridine n 93.4 0.16 3.5E-06 43.6 5.3 32 366-398 1-32 (80)
203 PTZ00325 malate dehydrogenase; 93.3 0.24 5.2E-06 54.3 7.8 35 362-396 6-42 (321)
204 PRK14620 NAD(P)H-dependent gly 93.3 0.58 1.3E-05 50.7 10.8 30 366-396 2-31 (326)
205 PRK07502 cyclohexadienyl dehyd 93.3 0.41 8.8E-06 51.6 9.4 33 364-396 6-39 (307)
206 PRK06125 short chain dehydroge 93.3 0.54 1.2E-05 48.5 10.0 35 362-397 5-40 (259)
207 PRK05479 ketol-acid reductoiso 93.3 0.32 7E-06 53.5 8.7 37 358-395 11-47 (330)
208 PRK08063 enoyl-(acyl carrier p 93.2 0.53 1.2E-05 47.9 9.8 30 362-391 2-32 (250)
209 PF03446 NAD_binding_2: NAD bi 93.2 0.2 4.2E-06 49.1 6.3 117 365-506 2-119 (163)
210 PRK08213 gluconate 5-dehydroge 93.2 0.38 8.2E-06 49.6 8.8 36 360-396 8-44 (259)
211 PRK07774 short chain dehydroge 93.2 0.65 1.4E-05 47.3 10.4 35 361-396 3-38 (250)
212 PRK11790 D-3-phosphoglycerate 93.2 0.31 6.8E-06 55.1 8.6 89 360-506 147-239 (409)
213 PTZ00117 malate dehydrogenase; 93.0 0.13 2.9E-06 56.0 5.3 36 362-397 3-38 (319)
214 PRK05565 fabG 3-ketoacyl-(acyl 93.0 0.61 1.3E-05 47.1 9.8 34 362-395 3-37 (247)
215 TIGR03376 glycerol3P_DH glycer 93.0 0.36 7.9E-06 53.3 8.6 111 366-510 1-120 (342)
216 PRK06139 short chain dehydroge 93.0 0.37 8.1E-06 52.6 8.7 35 361-396 4-39 (330)
217 TIGR01832 kduD 2-deoxy-D-gluco 93.0 0.42 9.2E-06 48.7 8.6 34 362-396 3-37 (248)
218 PRK06181 short chain dehydroge 92.9 0.61 1.3E-05 48.1 9.8 31 365-396 2-33 (263)
219 PRK08265 short chain dehydroge 92.9 0.44 9.6E-06 49.4 8.8 36 361-397 3-39 (261)
220 PRK07453 protochlorophyllide o 92.9 0.52 1.1E-05 50.6 9.6 34 362-396 4-38 (322)
221 PRK08229 2-dehydropantoate 2-r 92.9 0.34 7.3E-06 52.6 8.1 32 365-397 3-34 (341)
222 PF02826 2-Hacid_dh_C: D-isome 92.8 0.16 3.5E-06 50.4 5.2 93 359-506 31-127 (178)
223 TIGR00465 ilvC ketol-acid redu 92.8 0.67 1.5E-05 50.6 10.3 33 362-395 1-33 (314)
224 PRK06198 short chain dehydroge 92.8 0.47 1E-05 48.7 8.7 37 361-397 3-40 (260)
225 PRK08589 short chain dehydroge 92.7 0.52 1.1E-05 49.3 9.1 35 361-396 3-38 (272)
226 PTZ00082 L-lactate dehydrogena 92.7 0.15 3.3E-06 55.7 5.3 36 362-397 4-39 (321)
227 PRK13302 putative L-aspartate 92.7 0.59 1.3E-05 49.9 9.5 35 363-397 5-41 (271)
228 PRK06199 ornithine cyclodeamin 92.7 0.57 1.2E-05 52.5 9.8 78 364-486 155-235 (379)
229 PRK09496 trkA potassium transp 92.7 0.89 1.9E-05 51.2 11.5 90 366-501 2-93 (453)
230 PRK06196 oxidoreductase; Provi 92.7 0.57 1.2E-05 50.2 9.5 34 362-396 24-58 (315)
231 PRK06500 short chain dehydroge 92.6 0.54 1.2E-05 47.8 8.8 36 361-397 3-39 (249)
232 PRK07890 short chain dehydroge 92.6 0.61 1.3E-05 47.7 9.2 34 362-396 3-37 (258)
233 PRK06940 short chain dehydroge 92.5 0.69 1.5E-05 48.6 9.7 31 364-396 2-32 (275)
234 PRK07066 3-hydroxybutyryl-CoA 92.5 0.21 4.6E-06 54.7 6.0 32 365-397 8-39 (321)
235 PRK05717 oxidoreductase; Valid 92.5 0.54 1.2E-05 48.4 8.7 35 362-397 8-43 (255)
236 PRK07109 short chain dehydroge 92.5 0.52 1.1E-05 51.4 9.0 35 361-396 5-40 (334)
237 PRK07102 short chain dehydroge 92.5 0.74 1.6E-05 46.9 9.6 32 365-397 2-34 (243)
238 PLN02253 xanthoxin dehydrogena 92.5 0.76 1.6E-05 48.0 9.9 36 360-396 14-50 (280)
239 PRK08605 D-lactate dehydrogena 92.5 0.27 5.9E-06 53.9 6.8 36 360-396 142-178 (332)
240 PRK05653 fabG 3-ketoacyl-(acyl 92.4 0.6 1.3E-05 47.0 8.8 35 362-397 3-38 (246)
241 PLN00106 malate dehydrogenase 92.4 0.32 6.8E-06 53.4 7.2 36 363-398 17-54 (323)
242 PRK06129 3-hydroxyacyl-CoA deh 92.4 0.38 8.2E-06 52.0 7.7 33 365-398 3-35 (308)
243 PRK06914 short chain dehydroge 92.4 0.64 1.4E-05 48.4 9.2 34 363-397 2-36 (280)
244 PRK05872 short chain dehydroge 92.4 0.52 1.1E-05 50.1 8.7 35 361-396 6-41 (296)
245 PRK07531 bifunctional 3-hydrox 92.4 0.81 1.7E-05 52.9 10.7 31 365-396 5-35 (495)
246 PRK12828 short chain dehydroge 92.3 0.74 1.6E-05 46.2 9.2 36 361-397 4-40 (239)
247 PRK05855 short chain dehydroge 92.3 0.62 1.4E-05 53.4 9.7 37 359-396 310-347 (582)
248 PRK05786 fabG 3-ketoacyl-(acyl 92.2 0.71 1.5E-05 46.6 9.0 34 362-396 3-37 (238)
249 COG1893 ApbA Ketopantoate redu 92.2 0.57 1.2E-05 50.9 8.8 30 365-395 1-30 (307)
250 PLN02989 cinnamyl-alcohol dehy 92.2 0.87 1.9E-05 48.7 10.1 33 364-397 5-38 (325)
251 PRK09496 trkA potassium transp 92.2 1.2 2.5E-05 50.2 11.6 95 362-501 229-324 (453)
252 PRK12937 short chain dehydroge 92.1 0.75 1.6E-05 46.6 9.1 32 362-394 3-35 (245)
253 PRK08303 short chain dehydroge 92.1 0.87 1.9E-05 49.0 10.1 36 361-397 5-41 (305)
254 PRK07067 sorbitol dehydrogenas 92.1 0.89 1.9E-05 46.7 9.8 35 362-397 4-39 (257)
255 PRK09599 6-phosphogluconate de 92.1 0.57 1.2E-05 50.4 8.6 116 366-506 2-119 (301)
256 PRK12829 short chain dehydroge 92.1 0.78 1.7E-05 47.0 9.2 35 361-396 8-43 (264)
257 PRK06057 short chain dehydroge 92.0 0.66 1.4E-05 47.7 8.7 36 361-397 4-40 (255)
258 PRK08374 homoserine dehydrogen 92.0 0.73 1.6E-05 50.8 9.4 107 365-505 3-121 (336)
259 PF01408 GFO_IDH_MocA: Oxidore 92.0 0.93 2E-05 41.2 8.7 85 366-503 2-90 (120)
260 PRK07666 fabG 3-ketoacyl-(acyl 92.0 1.1 2.5E-05 45.3 10.2 36 361-397 4-40 (239)
261 COG1052 LdhA Lactate dehydroge 91.9 0.46 9.9E-06 52.2 7.6 93 360-508 142-238 (324)
262 PRK07074 short chain dehydroge 91.8 0.98 2.1E-05 46.3 9.7 32 364-396 2-34 (257)
263 PRK06270 homoserine dehydrogen 91.8 0.84 1.8E-05 50.3 9.7 22 365-386 3-24 (341)
264 TIGR02622 CDP_4_6_dhtase CDP-g 91.8 0.75 1.6E-05 50.0 9.2 35 362-397 2-37 (349)
265 PRK07097 gluconate 5-dehydroge 91.8 0.95 2.1E-05 46.9 9.6 35 361-396 7-42 (265)
266 PRK12769 putative oxidoreducta 91.8 0.61 1.3E-05 55.6 9.2 35 362-397 325-359 (654)
267 COG1063 Tdh Threonine dehydrog 91.8 0.68 1.5E-05 51.0 8.9 97 366-505 171-269 (350)
268 PRK06124 gluconate 5-dehydroge 91.7 0.82 1.8E-05 46.9 9.0 36 361-397 8-44 (256)
269 PRK08267 short chain dehydroge 91.7 0.73 1.6E-05 47.5 8.6 31 365-396 2-33 (260)
270 PTZ00431 pyrroline carboxylate 91.7 1 2.3E-05 47.4 9.9 34 363-396 2-38 (260)
271 PRK08085 gluconate 5-dehydroge 91.7 0.74 1.6E-05 47.3 8.6 34 362-396 7-41 (254)
272 PRK07814 short chain dehydroge 91.7 1.1 2.4E-05 46.4 10.0 35 362-397 8-43 (263)
273 PRK06935 2-deoxy-D-gluconate 3 91.7 0.9 1.9E-05 46.8 9.3 35 361-396 12-47 (258)
274 PRK09880 L-idonate 5-dehydroge 91.7 1.3 2.8E-05 48.1 10.8 34 363-396 169-202 (343)
275 cd02201 FtsZ_type1 FtsZ is a G 91.7 1.3 2.9E-05 48.0 10.8 107 365-505 1-120 (304)
276 PRK07035 short chain dehydroge 91.7 0.82 1.8E-05 46.8 8.9 35 361-396 5-40 (252)
277 PF10727 Rossmann-like: Rossma 91.7 0.27 5.9E-06 46.8 4.9 27 362-388 8-34 (127)
278 PRK13529 malate dehydrogenase; 91.7 0.91 2E-05 53.1 10.0 111 360-505 291-415 (563)
279 PRK12825 fabG 3-ketoacyl-(acyl 91.6 0.78 1.7E-05 46.1 8.5 29 362-390 4-33 (249)
280 cd01337 MDH_glyoxysomal_mitoch 91.6 0.46 9.9E-06 51.9 7.2 32 366-397 2-35 (310)
281 PRK12748 3-ketoacyl-(acyl-carr 91.6 1 2.2E-05 46.4 9.4 37 361-398 2-41 (256)
282 PRK12746 short chain dehydroge 91.6 0.91 2E-05 46.4 9.0 31 360-390 2-33 (254)
283 PRK06046 alanine dehydrogenase 91.6 0.78 1.7E-05 50.2 9.0 75 364-485 129-204 (326)
284 PRK06841 short chain dehydroge 91.5 0.91 2E-05 46.4 9.0 34 362-396 13-47 (255)
285 PRK12938 acetyacetyl-CoA reduc 91.5 1.2 2.5E-05 45.4 9.7 31 362-392 1-32 (246)
286 PRK07806 short chain dehydroge 91.5 1.2 2.6E-05 45.4 9.8 35 361-396 3-38 (248)
287 cd01076 NAD_bind_1_Glu_DH NAD( 91.5 0.99 2.2E-05 47.0 9.3 38 360-397 27-64 (227)
288 PRK06128 oxidoreductase; Provi 91.4 1 2.2E-05 47.9 9.6 35 359-394 50-85 (300)
289 PRK13581 D-3-phosphoglycerate 91.4 0.45 9.7E-06 55.5 7.3 36 360-396 136-171 (526)
290 TIGR00036 dapB dihydrodipicoli 91.3 1.1 2.5E-05 47.6 9.7 99 365-509 2-102 (266)
291 PF05368 NmrA: NmrA-like famil 91.3 2.8 6.1E-05 42.6 12.3 92 367-503 1-98 (233)
292 PRK06545 prephenate dehydrogen 91.2 1.1 2.3E-05 49.7 9.8 31 365-396 1-31 (359)
293 TIGR01757 Malate-DH_plant mala 91.2 0.88 1.9E-05 51.2 9.1 78 364-484 44-130 (387)
294 TIGR03325 BphB_TodD cis-2,3-di 91.2 0.86 1.9E-05 47.1 8.5 35 362-397 3-38 (262)
295 PRK11559 garR tartronate semia 91.1 0.91 2E-05 48.4 8.8 32 365-397 3-34 (296)
296 cd05211 NAD_bind_Glu_Leu_Phe_V 91.1 0.3 6.6E-06 50.5 5.0 39 360-398 19-57 (217)
297 PTZ00188 adrenodoxin reductase 91.1 0.95 2.1E-05 52.4 9.4 97 363-485 38-137 (506)
298 PRK02705 murD UDP-N-acetylmura 91.1 1.5 3.2E-05 49.8 10.9 97 365-504 1-97 (459)
299 TIGR00065 ftsZ cell division p 91.1 1.3 2.8E-05 49.2 10.2 109 363-505 16-137 (349)
300 TIGR03026 NDP-sugDHase nucleot 91.0 1.5 3.3E-05 49.3 10.9 41 366-407 2-42 (411)
301 PRK07792 fabG 3-ketoacyl-(acyl 91.0 1.5 3.2E-05 47.0 10.4 36 360-396 8-44 (306)
302 PRK08703 short chain dehydroge 91.0 1.2 2.6E-05 45.2 9.3 35 361-396 3-38 (239)
303 COG1064 AdhP Zn-dependent alco 91.0 2.1 4.6E-05 47.3 11.6 32 364-396 167-198 (339)
304 PLN02662 cinnamyl-alcohol dehy 91.0 1.2 2.6E-05 47.3 9.6 34 363-397 3-37 (322)
305 PRK08324 short chain dehydroge 91.0 0.97 2.1E-05 54.2 9.8 34 362-396 420-454 (681)
306 PRK12779 putative bifunctional 91.0 0.72 1.6E-05 57.5 8.9 97 363-485 305-403 (944)
307 cd00650 LDH_MDH_like NAD-depen 91.0 0.77 1.7E-05 48.4 8.0 32 367-398 1-36 (263)
308 PLN02896 cinnamyl-alcohol dehy 90.9 1.3 2.9E-05 48.1 10.1 34 362-396 8-42 (353)
309 PLN02852 ferredoxin-NADP+ redu 90.9 0.89 1.9E-05 52.7 9.1 43 363-407 25-69 (491)
310 TIGR02632 RhaD_aldol-ADH rhamn 90.9 1.2 2.7E-05 53.4 10.6 34 362-396 412-446 (676)
311 PRK06407 ornithine cyclodeamin 90.9 1.1 2.3E-05 48.8 9.1 78 363-486 116-194 (301)
312 COG0300 DltE Short-chain dehyd 90.9 1.5 3.2E-05 47.0 10.0 61 362-446 4-65 (265)
313 PRK08594 enoyl-(acyl carrier p 90.9 1.1 2.3E-05 46.7 8.9 34 362-396 5-41 (257)
314 KOG0024 Sorbitol dehydrogenase 90.9 1.2 2.6E-05 48.8 9.3 34 363-396 169-202 (354)
315 TIGR00872 gnd_rel 6-phosphoglu 90.8 0.64 1.4E-05 50.0 7.4 112 366-506 2-118 (298)
316 PRK07454 short chain dehydroge 90.8 1.5 3.3E-05 44.5 9.8 32 364-396 6-38 (241)
317 PF02423 OCD_Mu_crystall: Orni 90.8 0.75 1.6E-05 50.1 7.9 76 364-486 128-204 (313)
318 PRK12744 short chain dehydroge 90.8 1.8 3.8E-05 44.6 10.3 33 361-393 5-38 (257)
319 PRK08416 7-alpha-hydroxysteroi 90.7 1 2.2E-05 46.7 8.5 34 360-394 4-38 (260)
320 PRK07825 short chain dehydroge 90.7 0.8 1.7E-05 47.6 7.8 34 362-396 3-37 (273)
321 TIGR01772 MDH_euk_gproteo mala 90.7 0.47 1E-05 51.8 6.2 33 366-398 1-35 (312)
322 PRK02472 murD UDP-N-acetylmura 90.7 0.97 2.1E-05 51.0 9.0 35 362-397 3-37 (447)
323 PRK15181 Vi polysaccharide bio 90.7 1.3 2.8E-05 48.3 9.6 36 361-397 12-48 (348)
324 PRK08278 short chain dehydroge 90.7 1.8 3.9E-05 45.4 10.4 35 362-397 4-39 (273)
325 PRK12859 3-ketoacyl-(acyl-carr 90.6 1.3 2.8E-05 45.8 9.2 35 360-395 2-39 (256)
326 PRK09291 short chain dehydroge 90.6 1.9 4.1E-05 44.1 10.3 31 364-395 2-33 (257)
327 PRK07024 short chain dehydroge 90.6 1.2 2.6E-05 45.9 8.9 33 364-397 2-35 (257)
328 PRK09072 short chain dehydroge 90.5 1.1 2.4E-05 46.2 8.7 34 362-396 3-37 (263)
329 PRK11908 NAD-dependent epimera 90.5 3.2 6.9E-05 45.0 12.5 32 365-396 2-34 (347)
330 PRK06523 short chain dehydroge 90.5 0.77 1.7E-05 47.2 7.4 78 361-443 6-84 (260)
331 PRK08945 putative oxoacyl-(acy 90.4 0.98 2.1E-05 46.1 8.0 38 360-398 8-46 (247)
332 PRK12823 benD 1,6-dihydroxycyc 90.4 1.4 3.1E-05 45.2 9.2 36 360-396 4-40 (260)
333 COG2085 Predicted dinucleotide 90.4 2.3 5E-05 44.0 10.5 92 365-508 2-95 (211)
334 PLN02650 dihydroflavonol-4-red 90.4 1.6 3.5E-05 47.4 10.1 33 363-396 4-37 (351)
335 PRK12809 putative oxidoreducta 90.4 1.2 2.6E-05 53.1 9.8 35 363-398 309-343 (639)
336 PRK08628 short chain dehydroge 90.3 1.6 3.5E-05 44.8 9.5 35 361-396 4-39 (258)
337 PRK08643 acetoin reductase; Va 90.3 2.2 4.8E-05 43.7 10.5 32 364-396 2-34 (256)
338 PRK12862 malic enzyme; Reviewe 90.3 0.77 1.7E-05 55.8 8.1 39 360-398 189-229 (763)
339 TIGR01850 argC N-acetyl-gamma- 90.2 1.3 2.8E-05 49.0 9.2 101 365-510 1-105 (346)
340 COG1712 Predicted dinucleotide 90.2 1.3 2.8E-05 46.4 8.4 31 366-396 2-34 (255)
341 PRK00676 hemA glutamyl-tRNA re 90.2 0.36 7.7E-06 53.3 4.8 37 361-397 171-207 (338)
342 PRK08655 prephenate dehydrogen 90.2 1.6 3.4E-05 49.9 10.1 30 366-396 2-32 (437)
343 PRK06113 7-alpha-hydroxysteroi 90.1 1.4 3.1E-05 45.2 9.0 34 361-395 8-42 (255)
344 TIGR01318 gltD_gamma_fam gluta 90.1 1.2 2.5E-05 51.1 9.1 34 363-397 140-173 (467)
345 PRK06720 hypothetical protein; 90.1 1.6 3.4E-05 43.3 8.9 35 362-397 14-49 (169)
346 COG0281 SfcA Malic enzyme [Ene 90.1 0.32 6.9E-06 54.7 4.3 40 360-399 195-236 (432)
347 PLN02520 bifunctional 3-dehydr 90.1 0.36 7.9E-06 56.3 5.0 34 362-396 377-410 (529)
348 TIGR02415 23BDH acetoin reduct 90.1 1.7 3.7E-05 44.3 9.5 31 365-396 1-32 (254)
349 TIGR01505 tartro_sem_red 2-hyd 90.0 0.6 1.3E-05 49.8 6.2 31 366-397 1-31 (291)
350 PRK07984 enoyl-(acyl carrier p 90.0 1.3 2.8E-05 46.5 8.6 36 361-397 3-41 (262)
351 TIGR03451 mycoS_dep_FDH mycoth 90.0 2.3 5.1E-05 46.3 11.0 34 363-396 176-209 (358)
352 PRK03562 glutathione-regulated 90.0 2 4.4E-05 51.1 11.2 89 364-499 400-489 (621)
353 PRK07677 short chain dehydroge 89.9 1.6 3.4E-05 44.9 9.1 33 364-397 1-34 (252)
354 PRK12771 putative glutamate sy 89.8 1.1 2.4E-05 52.5 8.8 35 362-397 135-169 (564)
355 PRK10538 malonic semialdehyde 89.8 2 4.2E-05 44.1 9.7 30 366-396 2-32 (248)
356 TIGR01373 soxB sarcosine oxida 89.8 0.52 1.1E-05 52.3 5.8 40 363-402 29-69 (407)
357 PRK08306 dipicolinate synthase 89.8 0.47 1E-05 51.3 5.2 36 361-397 149-184 (296)
358 PLN03129 NADP-dependent malic 89.7 1.4 3E-05 51.8 9.2 103 360-505 317-434 (581)
359 PRK05650 short chain dehydroge 89.7 2 4.3E-05 44.6 9.8 31 365-396 1-32 (270)
360 PRK06079 enoyl-(acyl carrier p 89.7 1.4 3.1E-05 45.5 8.6 35 361-396 4-41 (252)
361 PF02629 CoA_binding: CoA bind 89.7 2.6 5.7E-05 37.7 9.2 90 363-505 2-93 (96)
362 PRK06200 2,3-dihydroxy-2,3-dih 89.7 1.3 2.7E-05 45.8 8.2 36 361-397 3-39 (263)
363 TIGR02371 ala_DH_arch alanine 89.6 1.6 3.4E-05 47.9 9.2 76 363-485 127-203 (325)
364 PRK12827 short chain dehydroge 89.6 1.8 3.9E-05 43.8 9.1 34 362-396 4-38 (249)
365 cd01338 MDH_choloroplast_like 89.6 0.66 1.4E-05 50.8 6.3 33 364-396 2-41 (322)
366 PRK07201 short chain dehydroge 89.6 1.7 3.6E-05 51.4 10.1 36 360-396 367-403 (657)
367 PRK12367 short chain dehydroge 89.5 0.6 1.3E-05 48.7 5.6 40 357-397 7-47 (245)
368 PRK07904 short chain dehydroge 89.5 2.8 6E-05 43.5 10.6 34 363-396 7-41 (253)
369 PRK11730 fadB multifunctional 89.5 0.15 3.2E-06 61.6 1.2 33 365-398 314-346 (715)
370 PRK07775 short chain dehydroge 89.5 2.6 5.7E-05 44.1 10.5 34 362-396 8-42 (274)
371 PRK06114 short chain dehydroge 89.4 2.2 4.8E-05 43.9 9.7 35 361-396 5-40 (254)
372 PLN02653 GDP-mannose 4,6-dehyd 89.4 1.4 3.1E-05 47.5 8.6 34 362-396 4-38 (340)
373 PRK07791 short chain dehydroge 89.2 1.8 4E-05 45.8 9.1 35 361-396 3-38 (286)
374 PRK13018 cell division protein 89.2 2.9 6.3E-05 47.0 11.0 39 360-398 24-64 (378)
375 PRK07589 ornithine cyclodeamin 89.1 1.7 3.6E-05 48.3 9.0 76 364-486 129-205 (346)
376 cd08239 THR_DH_like L-threonin 89.1 3.4 7.3E-05 44.4 11.2 34 363-396 163-196 (339)
377 PRK08340 glucose-1-dehydrogena 89.0 1.6 3.5E-05 45.0 8.4 30 366-396 2-32 (259)
378 PRK08226 short chain dehydroge 89.0 1.9 4.2E-05 44.3 9.0 36 361-397 3-39 (263)
379 PRK09330 cell division protein 89.0 3 6.6E-05 46.9 11.0 112 360-505 9-133 (384)
380 PRK06223 malate dehydrogenase; 89.0 0.55 1.2E-05 50.5 5.1 32 365-396 3-34 (307)
381 PRK10217 dTDP-glucose 4,6-dehy 88.9 1.6 3.5E-05 47.2 8.7 32 365-396 2-34 (355)
382 PRK07985 oxidoreductase; Provi 88.9 2.2 4.8E-05 45.4 9.6 34 361-395 46-80 (294)
383 TIGR01759 MalateDH-SF1 malate 88.9 1.2 2.7E-05 48.8 7.7 32 365-396 4-42 (323)
384 PF01266 DAO: FAD dependent ox 88.9 0.63 1.4E-05 49.3 5.4 35 366-401 1-35 (358)
385 PRK12409 D-amino acid dehydrog 88.9 0.53 1.1E-05 52.3 5.0 33 365-398 2-34 (410)
386 PRK11259 solA N-methyltryptoph 88.9 0.54 1.2E-05 51.2 4.9 35 364-399 3-37 (376)
387 COG0240 GpsA Glycerol-3-phosph 88.8 1.1 2.4E-05 49.2 7.2 106 365-510 2-109 (329)
388 TIGR01289 LPOR light-dependent 88.8 2.1 4.5E-05 46.1 9.4 35 363-397 2-37 (314)
389 TIGR02437 FadB fatty oxidation 88.8 0.19 4E-06 60.7 1.4 33 365-398 314-346 (714)
390 KOG1205 Predicted dehydrogenas 88.7 2.1 4.5E-05 46.3 9.1 93 357-481 5-98 (282)
391 PRK06035 3-hydroxyacyl-CoA deh 88.7 0.58 1.3E-05 50.0 5.0 33 365-398 4-36 (291)
392 PLN02657 3,8-divinyl protochlo 88.7 1.8 4E-05 48.3 9.1 33 363-396 59-92 (390)
393 PRK14192 bifunctional 5,10-met 88.7 0.48 1E-05 51.0 4.3 35 361-396 156-191 (283)
394 CHL00194 ycf39 Ycf39; Provisio 88.7 3.5 7.5E-05 44.3 11.0 30 366-396 2-32 (317)
395 TIGR01181 dTDP_gluc_dehyt dTDP 88.6 1.9 4.1E-05 45.2 8.8 31 366-396 1-33 (317)
396 PRK05557 fabG 3-ketoacyl-(acyl 88.6 2.8 6.1E-05 42.1 9.7 32 362-393 3-35 (248)
397 COG0665 DadA Glycine/D-amino a 88.6 0.65 1.4E-05 50.6 5.4 41 363-404 3-43 (387)
398 PRK12935 acetoacetyl-CoA reduc 88.6 2.7 5.8E-05 42.8 9.6 30 362-391 4-34 (247)
399 TIGR01316 gltA glutamate synth 88.6 2.5 5.4E-05 48.2 10.2 35 362-397 131-165 (449)
400 TIGR03366 HpnZ_proposed putati 88.5 3.5 7.6E-05 43.4 10.7 34 363-396 120-153 (280)
401 PRK08642 fabG 3-ketoacyl-(acyl 88.5 1.8 4E-05 44.0 8.3 30 362-391 3-33 (253)
402 TIGR03466 HpnA hopanoid-associ 88.5 1.7 3.7E-05 45.9 8.3 31 366-397 2-33 (328)
403 PLN02740 Alcohol dehydrogenase 88.4 3.7 8.1E-05 45.3 11.3 34 363-396 198-231 (381)
404 PRK00141 murD UDP-N-acetylmura 88.4 0.56 1.2E-05 53.8 4.9 38 359-397 10-47 (473)
405 cd08281 liver_ADH_like1 Zinc-d 88.4 3.3 7.1E-05 45.5 10.8 34 363-396 191-224 (371)
406 TIGR00561 pntA NAD(P) transhyd 88.3 1.5 3.2E-05 51.1 8.2 35 361-396 161-195 (511)
407 cd08230 glucose_DH Glucose deh 88.3 3.4 7.5E-05 44.9 10.7 33 363-396 172-204 (355)
408 PRK09135 pteridine reductase; 88.2 2.6 5.6E-05 42.6 9.1 33 363-396 5-38 (249)
409 PRK05884 short chain dehydroge 88.2 1.8 4E-05 44.0 8.1 31 366-397 2-33 (223)
410 PF03447 NAD_binding_3: Homose 88.2 0.99 2.1E-05 41.5 5.5 38 467-505 50-89 (117)
411 PRK08862 short chain dehydroge 88.2 2 4.4E-05 44.0 8.4 34 362-396 3-37 (227)
412 cd05292 LDH_2 A subgroup of L- 88.2 0.67 1.5E-05 50.3 5.1 32 366-397 2-34 (308)
413 PRK08936 glucose-1-dehydrogena 88.1 2.6 5.6E-05 43.5 9.2 34 361-395 4-38 (261)
414 COG1250 FadB 3-hydroxyacyl-CoA 88.0 0.32 6.9E-06 53.0 2.4 33 364-397 3-35 (307)
415 PRK08264 short chain dehydroge 88.0 0.72 1.6E-05 46.7 4.9 36 362-397 4-40 (238)
416 KOG1201 Hydroxysteroid 17-beta 87.9 1.9 4E-05 46.8 8.1 93 358-454 32-131 (300)
417 TIGR00873 gnd 6-phosphoglucona 87.9 1.1 2.4E-05 51.6 6.9 120 366-506 1-123 (467)
418 PRK06249 2-dehydropantoate 2-r 87.9 0.69 1.5E-05 50.0 4.9 34 364-398 5-38 (313)
419 PLN02214 cinnamoyl-CoA reducta 87.9 2.7 5.8E-05 45.9 9.5 35 361-396 7-42 (342)
420 TIGR01963 PHB_DH 3-hydroxybuty 87.8 3.7 8E-05 41.7 10.0 32 365-397 2-34 (255)
421 PLN02986 cinnamyl-alcohol dehy 87.7 3 6.5E-05 44.6 9.7 29 363-392 4-33 (322)
422 PRK12490 6-phosphogluconate de 87.6 1.9 4.1E-05 46.4 8.1 31 366-397 2-32 (299)
423 PLN02350 phosphogluconate dehy 87.6 3.5 7.5E-05 47.9 10.7 120 365-506 7-132 (493)
424 PRK06947 glucose-1-dehydrogena 87.6 2.5 5.5E-05 43.0 8.7 26 365-390 3-29 (248)
425 cd05297 GH4_alpha_glucosidase_ 87.6 2.2 4.8E-05 48.5 8.9 33 365-397 1-38 (423)
426 PRK06077 fabG 3-ketoacyl-(acyl 87.5 2.7 5.8E-05 42.8 8.7 30 362-391 4-34 (252)
427 PRK07889 enoyl-(acyl carrier p 87.4 1.8 3.8E-05 45.0 7.5 36 361-397 4-42 (256)
428 PRK06567 putative bifunctional 87.4 3.4 7.4E-05 51.6 10.9 41 362-403 381-421 (1028)
429 PRK12743 oxidoreductase; Provi 87.3 2.8 6E-05 43.2 8.9 30 364-394 2-32 (256)
430 PRK08993 2-deoxy-D-gluconate 3 87.3 3.4 7.3E-05 42.6 9.5 34 361-395 7-41 (253)
431 PRK06823 ornithine cyclodeamin 87.3 2.6 5.5E-05 46.2 8.9 76 363-485 127-203 (315)
432 PRK06182 short chain dehydroge 87.3 2.3 5.1E-05 44.2 8.4 33 363-396 2-35 (273)
433 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.3 0.49 1.1E-05 55.0 3.5 34 363-397 4-37 (503)
434 PRK07370 enoyl-(acyl carrier p 87.3 3 6.5E-05 43.3 9.2 33 362-395 4-39 (258)
435 PRK08690 enoyl-(acyl carrier p 87.3 2.5 5.5E-05 44.0 8.6 35 360-395 2-39 (261)
436 PRK07533 enoyl-(acyl carrier p 87.2 3 6.5E-05 43.3 9.1 36 361-397 7-45 (258)
437 TIGR01763 MalateDH_bact malate 87.2 0.8 1.7E-05 49.7 4.9 32 365-396 2-33 (305)
438 PRK12742 oxidoreductase; Provi 87.2 2.9 6.4E-05 42.1 8.8 33 361-394 3-36 (237)
439 PRK07424 bifunctional sterol d 87.1 2.9 6.2E-05 47.4 9.4 35 361-396 175-210 (406)
440 PRK05808 3-hydroxybutyryl-CoA 87.0 0.79 1.7E-05 48.7 4.7 32 365-397 4-35 (282)
441 PRK05599 hypothetical protein; 87.0 3 6.4E-05 43.0 8.9 29 366-396 2-31 (246)
442 PRK06505 enoyl-(acyl carrier p 87.0 2.9 6.3E-05 43.9 9.0 34 362-396 5-41 (271)
443 PRK12936 3-ketoacyl-(acyl-carr 87.0 3.2 6.9E-05 41.9 8.9 34 362-396 4-38 (245)
444 PRK15461 NADH-dependent gamma- 87.0 1.4 3.1E-05 47.3 6.7 32 365-397 2-33 (296)
445 PLN00141 Tic62-NAD(P)-related 87.0 8.1 0.00018 39.9 12.1 35 358-393 11-46 (251)
446 PRK13303 L-aspartate dehydroge 87.0 3.7 8E-05 43.6 9.7 31 365-395 2-33 (265)
447 TIGR01472 gmd GDP-mannose 4,6- 87.0 2.5 5.5E-05 45.7 8.7 32 365-397 1-33 (343)
448 COG0039 Mdh Malate/lactate deh 86.9 0.75 1.6E-05 50.3 4.5 33 365-397 1-34 (313)
449 PRK07530 3-hydroxybutyryl-CoA 86.9 0.88 1.9E-05 48.6 5.0 33 364-397 4-36 (292)
450 PRK06392 homoserine dehydrogen 86.8 3.7 8E-05 45.2 9.8 31 366-396 2-40 (326)
451 PRK09730 putative NAD(P)-bindi 86.8 3.5 7.7E-05 41.6 9.2 26 365-390 2-28 (247)
452 PF08659 KR: KR domain; Inter 86.8 4.5 9.8E-05 40.1 9.7 58 366-444 2-60 (181)
453 COG0345 ProC Pyrroline-5-carbo 86.8 3.9 8.5E-05 43.8 9.7 92 365-508 2-97 (266)
454 PRK09310 aroDE bifunctional 3- 86.8 0.86 1.9E-05 52.6 5.1 34 362-396 330-363 (477)
455 PRK07856 short chain dehydroge 86.5 1.9 4.2E-05 44.2 7.1 77 362-443 4-82 (252)
456 PRK12810 gltD glutamate syntha 86.4 2.8 6E-05 48.0 9.0 34 363-397 142-175 (471)
457 TIGR01771 L-LDH-NAD L-lactate 86.3 1.9 4.1E-05 46.8 7.2 28 369-396 1-29 (299)
458 TIGR01377 soxA_mon sarcosine o 86.3 0.91 2E-05 49.5 4.8 33 366-399 2-34 (380)
459 PLN02545 3-hydroxybutyryl-CoA 86.3 0.99 2.1E-05 48.3 5.0 32 365-397 5-36 (295)
460 PLN00198 anthocyanidin reducta 86.2 4.5 9.9E-05 43.6 10.1 35 362-397 7-42 (338)
461 PRK07069 short chain dehydroge 86.2 4.3 9.3E-05 41.2 9.5 30 366-396 1-31 (251)
462 PRK04207 glyceraldehyde-3-phos 86.1 4.2 9.1E-05 44.9 9.9 37 468-505 72-108 (341)
463 PLN02968 Probable N-acetyl-gam 86.0 2.4 5.2E-05 47.6 8.0 96 363-505 37-133 (381)
464 PRK10084 dTDP-glucose 4,6 dehy 85.9 3.1 6.7E-05 45.0 8.7 31 366-396 2-33 (352)
465 cd05296 GH4_P_beta_glucosidase 85.9 3.8 8.1E-05 46.7 9.6 96 366-501 2-104 (419)
466 PF01494 FAD_binding_3: FAD bi 85.9 0.97 2.1E-05 47.9 4.7 34 365-399 2-35 (356)
467 COG1062 AdhC Zn-dependent alco 85.8 4.8 0.0001 44.6 9.9 100 363-505 185-285 (366)
468 TIGR02441 fa_ox_alpha_mit fatt 85.8 0.27 5.8E-06 59.6 0.4 33 365-398 336-368 (737)
469 PRK07832 short chain dehydroge 85.8 3.4 7.4E-05 43.0 8.6 31 365-396 1-32 (272)
470 PRK05225 ketol-acid reductoiso 85.7 2.3 4.9E-05 48.9 7.6 34 358-391 30-63 (487)
471 PRK00711 D-amino acid dehydrog 85.7 1 2.2E-05 49.9 4.9 32 366-398 2-33 (416)
472 PRK08415 enoyl-(acyl carrier p 85.7 3.9 8.5E-05 43.2 9.1 35 362-397 3-40 (274)
473 PRK04690 murD UDP-N-acetylmura 85.7 2.7 5.9E-05 48.2 8.5 36 362-398 6-41 (468)
474 PRK09987 dTDP-4-dehydrorhamnos 85.7 3.2 7E-05 44.3 8.6 30 366-397 2-32 (299)
475 PRK12814 putative NADPH-depend 85.6 3.3 7.2E-05 49.6 9.5 34 363-397 192-225 (652)
476 PRK15076 alpha-galactosidase; 85.6 2.6 5.7E-05 48.1 8.2 94 365-501 2-105 (431)
477 PRK06701 short chain dehydroge 85.6 3.2 7E-05 44.1 8.5 36 360-396 42-78 (290)
478 PLN02206 UDP-glucuronate decar 85.5 5.9 0.00013 45.2 11.0 35 361-396 116-151 (442)
479 PRK03659 glutathione-regulated 85.5 3.9 8.4E-05 48.6 9.9 89 364-499 400-489 (601)
480 TIGR01500 sepiapter_red sepiap 85.5 4.3 9.3E-05 41.9 9.1 58 366-446 2-64 (256)
481 PRK12775 putative trifunctiona 85.4 3 6.4E-05 52.6 9.2 34 363-397 429-462 (1006)
482 PRK09134 short chain dehydroge 85.3 3.9 8.5E-05 42.1 8.7 31 363-394 8-39 (258)
483 PRK08220 2,3-dihydroxybenzoate 85.3 4.5 9.7E-05 41.2 9.1 36 362-398 6-42 (252)
484 PRK00811 spermidine synthase; 85.1 3 6.5E-05 44.8 8.0 34 363-398 76-110 (283)
485 PRK00257 erythronate-4-phospha 85.1 1.1 2.4E-05 50.2 4.9 56 334-396 92-147 (381)
486 PRK06349 homoserine dehydrogen 85.1 4.4 9.5E-05 46.1 9.7 23 364-386 3-25 (426)
487 PLN02827 Alcohol dehydrogenase 85.1 6.4 0.00014 43.6 10.8 34 363-396 193-226 (378)
488 PF10087 DUF2325: Uncharacteri 84.9 5.2 0.00011 35.9 8.3 40 466-505 40-81 (97)
489 PRK12481 2-deoxy-D-gluconate 3 84.9 4.3 9.3E-05 41.9 8.8 34 362-396 6-40 (251)
490 PRK12778 putative bifunctional 84.7 3.7 8.1E-05 49.9 9.5 35 362-397 429-463 (752)
491 PRK07060 short chain dehydroge 84.6 1.5 3.2E-05 44.5 5.1 34 362-396 7-41 (245)
492 PRK10309 galactitol-1-phosphat 84.5 8.8 0.00019 41.4 11.4 34 363-396 160-193 (347)
493 PRK01747 mnmC bifunctional tRN 84.4 1.1 2.5E-05 53.4 4.8 34 364-398 260-293 (662)
494 PRK06603 enoyl-(acyl carrier p 84.4 5.2 0.00011 41.6 9.2 35 361-396 5-42 (260)
495 PRK12770 putative glutamate sy 84.4 5.6 0.00012 43.5 9.9 112 363-484 17-128 (352)
496 TIGR01179 galE UDP-glucose-4-e 84.4 9 0.00019 40.2 11.1 29 366-395 1-30 (328)
497 TIGR01214 rmlD dTDP-4-dehydror 84.3 7.5 0.00016 40.5 10.4 30 366-396 1-31 (287)
498 PRK08818 prephenate dehydrogen 84.3 4.8 0.0001 45.1 9.3 35 362-396 2-37 (370)
499 cd02191 FtsZ FtsZ is a GTPase 84.3 7.8 0.00017 42.2 10.7 105 366-505 2-120 (303)
500 PRK02318 mannitol-1-phosphate 84.1 3.5 7.5E-05 46.1 8.2 46 366-412 2-48 (381)
No 1
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.9e-179 Score=1434.42 Aligned_cols=661 Identities=52% Similarity=0.875 Sum_probs=591.4
Q ss_pred CCceeeecCccCCChhhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCc
Q 005071 12 GSILQFAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRN 91 (715)
Q Consensus 12 ~~~l~f~p~~s~vd~~Fw~~L~~~KL~~~kLd~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~ 91 (715)
+.+|||+||.|++|++|||+|+++|||+|||||+|+.|+|+|.+.+..+ +++++++.||+.... ..
T Consensus 5 ~~~LqFaPf~S~lD~~FWhels~~KLd~~kLD~sP~~I~~~~~~~~~sg--~~lsl~~~~~~~~~~------------~~ 70 (669)
T KOG2337|consen 5 EIILQFAPFESFLDTGFWHELSELKLDKLKLDDSPKSITGHLTNRNASG--CLLSLSYGAFNSLAN------------TP 70 (669)
T ss_pred cceeeecchhhhcchHHHHHHHhhhcchhcccCCcceeeceeccCCCcc--ceEEEecccccccCC------------CC
Confidence 3689999999999999999999999999999999999999999987766 899999999986532 12
Q ss_pred eeeeeeeEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEEEeeccCCCCCe
Q 005071 92 KCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPA 171 (715)
Q Consensus 92 ~~~~~G~l~n~NTie~fk~~DK~~lL~~~g~~Iw~~i~~g~~~~~p~~l~~F~~ltfaDLKky~f~YwfafPa~~~~~~~ 171 (715)
.+++.|+|||+||+|+||++||+.|++++|++||++|++|++++||++|++|+||||||||||+||||||||||+.+.+.
T Consensus 71 ~~~a~Gtl~N~NT~esFk~lDK~~ll~~ea~eiwesi~sG~aledP~lL~rFliisFADLKky~fyYW~~fPal~~~~~~ 150 (669)
T KOG2337|consen 71 GCPAIGTLYNTNTLESFKNLDKQLLLEQEAEEIWESIKSGKALEDPNLLSRFLIISFADLKKYKFYYWFCFPALVLPEPV 150 (669)
T ss_pred CCccceeeeccccHHHHhhhhHHHHHHHHHHHHHHhhccCccccChhhhhhhhhhhhhhhhhheeEEEeecchhhcCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999988887664
Q ss_pred eeeccCcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEeecCCcceeccccchhhhcCCC-cceEEEEecCCCCCC
Q 005071 172 TVVDLKPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDG-QKLLFGFYDPCHLQN 250 (715)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~Dps~~~~ 250 (715)
......|.++.++... .+.++++.|+........|||+++.+++..+.+.+|++.+.+..+. +.++ +++|||..++
T Consensus 151 ~~I~~~p~~~~~s~~~--~l~~~~~~~~d~~~~~~~pffl~s~ss~~~~~~~~l~~ld~c~~~~~k~~~-~~~D~~~la~ 227 (669)
T KOG2337|consen 151 SLIKDLPPSQEFSPKG--SLGAACNILFDTARVYNFPFFLLSKSSDDESKILELSELDNCQGNHTKICL-VVYDPSQLAS 227 (669)
T ss_pred hhhcccCchhccCccc--chHHHHHHHHhhhcccccceEEEEccccchhhhhhhhhhhhcccCCceEEE-Eecccccccc
Confidence 4333455556666655 5667888999887778999999999887788888899888876654 4566 9999999999
Q ss_pred CCChhHHHHHHHHHhhcCceeEEEEEEEcCCCcc-cCCCceEEEEEeecCCCCCCCCCCcccccEEec-CCcccceEecc
Q 005071 251 HPGWPLRNFLALILTRWKLKSVLFLCYRENRGFT-DLGLSLVGEALITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (715)
Q Consensus 251 ~pgw~lRN~l~~~~~~~~~~~~~v~~~R~~~~~~-~~~~S~~~~~~~~~~~~~~~~~~~~~~~gwe~~-~gkl~pr~~dl 328 (715)
+||||+||+|++++++|.++.+.++|||++++.- +++.++.+.+..+.. ...+..|+++|||+| +||++||+|||
T Consensus 228 ~pgwplrN~La~~~~~~~~~~i~~~~lR~~~~~~~~~s~~~~~~~~~~~~---~s~~~~~k~VGWErN~~Gkl~PR~V~L 304 (669)
T KOG2337|consen 228 YPGWPLRNFLALAAHRWPLKHIHFFLLRDRQNMGIDLSLVIKFAVTLACD---LSQNAVPKAVGWERNKNGKLGPRMVDL 304 (669)
T ss_pred cCChhhHHHHHHHHhhcccceeEEEEEEeccccCccceeEEEEEEecccc---ccccCCccccceeeccCCCcCceEEeh
Confidence 9999999999999999999999999999976433 554555555555542 234578999999999 89999999999
Q ss_pred cCCCChhhhhhhhhhhhhhhhhhhcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCC
Q 005071 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (715)
Q Consensus 329 ~~~~dp~~la~~a~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~ 408 (715)
+.+|||.+|+|+++|+|+++||||++|+++++++++.|||++|||+|||+|||+|++|||+||||||+++|++||++||.
T Consensus 305 s~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQs 384 (669)
T KOG2337|consen 305 SDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQS 384 (669)
T ss_pred hhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHH
Q 005071 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (715)
Q Consensus 409 L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR 488 (715)
||+++||.++|++||++|+++|++|||.++.+++.++||||||||+++.+++...+.+.++++|++||+||++||+||+|
T Consensus 385 Ly~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR 464 (669)
T KOG2337|consen 385 LYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR 464 (669)
T ss_pred hhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEeeeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCC
Q 005071 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (715)
Q Consensus 489 ~li~~~~~~~~kp~I~aalG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s 568 (715)
|+++.+|..++|.+||+|+|||+|+|||||.++....... .+.+ -..+++.++|||||+|++||+||
T Consensus 465 WLPtll~a~~~KivINaALGFDsylVMRHG~~~~~~~~d~------------q~s~-~~~i~~~qLGCYFCnDV~AP~nS 531 (669)
T KOG2337|consen 465 WLPTLLAAAKNKIVINAALGFDSYLVMRHGTGRKEASDDG------------QSSD-LKCINGDQLGCYFCNDVVAPGNS 531 (669)
T ss_pred hhHHHHHhhhcceEeeeecccceeEEEecCCCCccccccc------------cccc-ccccCcccceeEeEcceecCCCc
Confidence 9999999999999999999999999999998863221111 1111 13456789999999999999999
Q ss_pred CccccccccccccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCC
Q 005071 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGH 648 (715)
Q Consensus 569 ~~drtLdq~CtV~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~ 648 (715)
+.||||||||||+|||+++||+++|||+|+++||||.|... +.. .+....+++++||..|||||||+++|+++++.++
T Consensus 532 l~DRTLDQqCTVtRPG~a~IA~alAVELlvslLQhP~~~a~-~~s-~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~ 609 (669)
T KOG2337|consen 532 LTDRTLDQQCTVTRPGVANIASALAVELLVSLLQHPLGYAQ-NSS-EETEENEPTTVLGILPHQIRGFLHNFSNILPSTQ 609 (669)
T ss_pred ccccchhheeeccCCchhHHHHHHHHHHHHHHHhCcccccc-CCC-cccccCCCCcccccccHHHHHhhhhhhhhccccc
Confidence 99999999999999999999999999999999999977433 221 1122235678999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHhCHHHHHHHhcCCchhhhccChhHHHHhhccccccccCCCC
Q 005071 649 SSNSCTACCSTVVSEYRKRGMEFILQAINHPTYLEDLTGLTELKKSANSFHVDWDYESD 707 (715)
Q Consensus 649 ~~~~C~aCs~~v~~~y~~~g~~f~~~~~~~~~~le~~~Gl~~~~~~~~~~~~~~~~~~~ 707 (715)
+|++|+|||++|+++|+++||.||.++||+|+|||++|||+++|+++....+||+|||+
T Consensus 610 af~qC~ACS~~Vi~ey~~eGw~Fv~ka~n~p~yLEdltGL~elk~~~ns~~~d~eDdE~ 668 (669)
T KOG2337|consen 610 AFDQCTACSEAVINEYKREGWAFVLKAFNSPKYLEDLTGLSELKQELNSEIIDFEDDES 668 (669)
T ss_pred cccccchhhHHHHHHHHHhhHHHHHHHhcCccHHHHhhCHHHHHHHhccceeeccccCC
Confidence 99999999999999999999999999999999999999999999997776677876654
No 2
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=2.7e-171 Score=1437.62 Aligned_cols=656 Identities=45% Similarity=0.740 Sum_probs=588.7
Q ss_pred eecCccCCChhhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCceeeee
Q 005071 17 FAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRNKCTVP 96 (715)
Q Consensus 17 f~p~~s~vd~~Fw~~L~~~KL~~~kLd~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~~~~~~ 96 (715)
|+||+|+||++|||+|+++|||++||||+|++|+|+|++++..+.+++++||++||+++.. ...+.+.++++
T Consensus 1 f~pf~S~vd~~Fw~~Ls~~KL~~~kLdds~~~i~g~y~~~~~~~~~~~l~l~~~sf~~~~~--------~~~~~~~~~~~ 72 (664)
T TIGR01381 1 FVPFVSCVDTGFWNEVSKLKLNKWKLDDTPKCISGQLSLHQTEGFKCHLSLSYDSLSSLES--------TTGTHAQLSVS 72 (664)
T ss_pred CCCcccccCcHHHHHHHhhhcccccCCCCceeEEEEEeccCCCCCCceEEEehhhCCcccc--------ccCCCCceEEE
Confidence 8999999999999999999999999999999999999999888888999999999975421 11245678999
Q ss_pred eeEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEEEeeccCCCCCeeeecc
Q 005071 97 GTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDL 176 (715)
Q Consensus 97 G~l~n~NTie~fk~~DK~~lL~~~g~~Iw~~i~~g~~~~~p~~l~~F~~ltfaDLKky~f~YwfafPa~~~~~~~~~~~~ 176 (715)
|+|+|+||||+||++||++||+++|++||++|.+|+++++|++|++|+||||||||||||||||||||++++++|++...
T Consensus 73 G~l~N~NTiE~Fk~~DK~~ll~~~~~~i~~~i~~g~~~~~pslL~~F~ilsfADLKky~f~YWfafPal~~~~~~~~~~~ 152 (664)
T TIGR01381 73 GILLNYNTVESFKKVDKSDLLRSEAEKIWESIQTRKWLQDPSLLSQFFIISFADLKKFKFYYWFCFPALVYPSKVNKLSG 152 (664)
T ss_pred EEEEecccHHHHHhhhHHHHHHHHHHHHHHHHhcCCcccCHHHHHhhHhhhhhhcccceEEEEEEEcccCCCCcceEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred CcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEeecCCcceeccccchhhhcCCCcceEEEEecCCCCCCCCChhH
Q 005071 177 KPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPGWPL 256 (715)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~Dps~~~~~pgw~l 256 (715)
....+.++.++.+.+.+.+++|++.....+.+||++....+..+++.+|++|+.. .+..++ ||+|||+++++|||||
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ffl~~~~~~~~~~~~~l~~~~~~--~~~~~~-~f~Dps~~~~~Pgw~l 229 (664)
T TIGR01381 153 LTESIKQEITPLESLGADHKILFDFYRKNNFPFFLYSKQSSKMLELSELENNTNP--DDELCV-GFADPSPVAYSAGWML 229 (664)
T ss_pred cccccccCchhhHHHHHHHHHHHhhcccccccEEEEEecCCCceeEeehhhcccC--CCceEE-EEEcCCCCCCCCCHHH
Confidence 3334447777788888999999998766678999998665666788888888731 222377 9999999999999999
Q ss_pred HHHHHHHHhhcC-ceeEEEEEEEcCCCcccCCCceEEEEE------eecCCCCCCCCCCcccccEEec-CCcccceEecc
Q 005071 257 RNFLALILTRWK-LKSVLFLCYRENRGFTDLGLSLVGEAL------ITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (715)
Q Consensus 257 RN~l~~~~~~~~-~~~~~v~~~R~~~~~~~~~~S~~~~~~------~~~~~~~~~~~~~~~~~gwe~~-~gkl~pr~~dl 328 (715)
||||++++++|+ +++++|+|||+..+ . +|++++++ ++.. ......|+++|||+| .||++||.+||
T Consensus 230 RN~L~~l~~~~~~~~~~~vl~~R~~~~---~-~s~~~~~~~~~~~~~~~~---~~~~~~pk~~GWErn~~GKl~pr~~dL 302 (664)
T TIGR01381 230 RNVLAAVAHLHPTWKHVHIFSLRSADS---I-GIKYLWTTLLPSAELSSD---GAQNAVPKAVGWERNANGKLQPISVDL 302 (664)
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCCC---C-CcEEEEEeeccccccCcc---cccccCcccccccccCCCCcCceEech
Confidence 999999999997 88999999998632 2 69999998 4421 112225999999999 99999999999
Q ss_pred cCCCChhhhhhhhhhhhhhhhhhhcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCC
Q 005071 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (715)
Q Consensus 329 ~~~~dp~~la~~a~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~ 408 (715)
+++|||.+|+++++|||+||||||++|++++++|+++||||||||||||+||++|++||||+|||||+|+|++|||+||+
T Consensus 303 ~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~ 382 (664)
T TIGR01381 303 SKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQS 382 (664)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHH
Q 005071 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (715)
Q Consensus 409 L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR 488 (715)
||+++|+.++|++||++|+++|++|||+|+++++...|||||||+++..+++...+.+++.+++++||+||+|+||+++|
T Consensus 383 Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR 462 (664)
T TIGR01381 383 LSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR 462 (664)
T ss_pred ccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH
Confidence 99999998889999999999999999999999999999999999998767788888999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEeeeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCC
Q 005071 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (715)
Q Consensus 489 ~li~~~~~~~~kp~I~aalG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s 568 (715)
|++|.+|.+++||+|++++||+||++||||..+....+... ..+.....++|||||+|+++|.++
T Consensus 463 ~L~n~~c~~~~kplI~aAlGfdg~lvmrhG~~~~~~~~~~~---------------~~~~~~~~~~gCYfC~Dv~aP~~s 527 (664)
T TIGR01381 463 WLPTVLCSRHKKIAISAALGFDSYVVMRHGIGRSESVSDVS---------------SSDSVPYSRLGCYFCNDVTAPGDS 527 (664)
T ss_pred HHHHHHHHHhCCCEEEEEeccceEEEEEecccccccccccc---------------cccccCCCCCCccccCCCCCCCcc
Confidence 99999999999999999999999999999987532111000 000112348999999999999999
Q ss_pred CccccccccccccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCC
Q 005071 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGH 648 (715)
Q Consensus 569 ~~drtLdq~CtV~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~ 648 (715)
+.+|||||||||+|||+|+|||+||+|+|++|+|||+|..+|+...+ ..++||.+|||||||+++|+++++.++
T Consensus 528 ~~~rtlDqqCtVtrPgv~~ias~~AvEll~~llqhp~~~~ap~~~~~------~~~~lG~~Phqirg~l~~f~~~~~~~~ 601 (664)
T TIGR01381 528 TTDRTLDQQCTVTRPGTAMIASGLAVELLVSVLQHPLPSKTPASHDD------NTTVLGALPHQIRGFLGRFQQILLSVK 601 (664)
T ss_pred cccccccccceEecchHHHHHHHHHHHHHHHHhcCCcccCCCCcCCC------CCCccccCCceeeeehhhCeeeeeccc
Confidence 99999999999999999999999999999999999999999887522 237999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHhCHHHHHHHhcCCchhhhccChhHHHHhhccccccccCCCCCCcc
Q 005071 649 SSNSCTACCSTVVSEYRKRGMEFILQAINHPTYLEDLTGLTELKKSANSFHVDWDYESDNEDD 711 (715)
Q Consensus 649 ~~~~C~aCs~~v~~~y~~~g~~f~~~~~~~~~~le~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 711 (715)
+|++|+|||+.|+++|+++||+||++|||+|+|||++|||+++|+++|...++|+|+|+||||
T Consensus 602 ~~~~C~aCs~~v~~~y~~~g~~fv~~~~~~~~~le~~tgl~~~~~~~e~~~~~w~d~e~~~~~ 664 (664)
T TIGR01381 602 RFDQCVACSDAVAAEYQQRGWKFVRDAMNSPGYLEDLTGLTELKNESSVNAIDIQDFESDDDD 664 (664)
T ss_pred CCCcccCCCHHHHHHHHhccHHHHHHHhcCcchhhHhcCHHHHHHhhhhhcccccccccccCC
Confidence 999999999999999999999999999999999999999999999988877899766555543
No 3
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=1e-86 Score=698.98 Aligned_cols=305 Identities=60% Similarity=1.008 Sum_probs=280.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcch--hcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD--CLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~D--i~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
||+|+|||||||+||++|++||||+|+|||+|+|+++||+||+||+++| + |++||++|+++|+++||+++++++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence 7999999999999999999999999999999999999999999999999 7 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCCceEEEEEcCCCCCc
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFS 523 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~~g~vv~~~g~~p~~ 523 (715)
+.|||||||+++.++++.+.+.+++.++++++|+||+|+|++++||+++.+|.+++||+|++++||+||++||||..+..
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGfdg~lvmrhg~~~~~ 157 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGFDSYLVMRHGAGPQS 157 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEeccceEEEEEeCCCccc
Confidence 99999999999877778888999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHHHHHHHHHHHhcC
Q 005071 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELFVGVLHH 603 (715)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~Pgv~~ias~~A~Ell~~ll~h 603 (715)
..+... +........++|||||+|+++|.||++||||||||||||||+++|||++|||||++|+||
T Consensus 158 ~~~~~~--------------~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias~~avEl~~s~lqh 223 (307)
T cd01486 158 QSGSGD--------------SSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIASSIAVELLVSLLQH 223 (307)
T ss_pred cccccc--------------ccccccCCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHHHHHHHHHHHHHcC
Confidence 111000 001123345899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCChhHHHHHHHhCHHHHHHHhcCCchhh
Q 005071 604 PKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACCSTVVSEYRKRGMEFILQAINHPTYLE 683 (715)
Q Consensus 604 p~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs~~v~~~y~~~g~~f~~~~~~~~~~le 683 (715)
|+|..||+..... ...+.+++||.+|||||||+++|+++++.+++|++|+|||+.|+++|+++||+||+++||+|+|||
T Consensus 224 p~~~~a~~~~~~~-~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v~~~y~~~g~~fv~~~~~~~~~le 302 (307)
T cd01486 224 PLGGHAPAESSSN-EGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAVIDEYHREGWEFVLKAFNSPDYLE 302 (307)
T ss_pred CCccCCCCccccc-cCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHHHHHHHhccHHHHHHHHcCcchHH
Confidence 9999999875321 223456899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCh
Q 005071 684 DLTGL 688 (715)
Q Consensus 684 ~~~Gl 688 (715)
++|||
T Consensus 303 ~~~gl 307 (307)
T cd01486 303 ELTGL 307 (307)
T ss_pred HhcCC
Confidence 99997
No 4
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=415.36 Aligned_cols=239 Identities=27% Similarity=0.335 Sum_probs=217.8
Q ss_pred hhhhhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCC
Q 005071 343 DLNLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419 (715)
Q Consensus 343 dlnlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G 419 (715)
|.-.||+||+++|++| |.+|++++|||||||||||+++.+|+++|||+|-|||+|.||.||++||++|+++++ |
T Consensus 42 dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~v---g 118 (427)
T KOG2017|consen 42 DEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARV---G 118 (427)
T ss_pred HHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhh---h
Confidence 4458999999999996 899999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005071 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (715)
Q Consensus 420 ~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~ 499 (715)
++||++|+..++++||.++|+.|.. ..+..|+.++|+++|||+|||||..+||++++.|+..|
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~-----------------~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg 181 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNE-----------------FLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG 181 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechh-----------------hccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC
Confidence 9999999999999999999999985 45889999999999999999999999999999999999
Q ss_pred CeEEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc
Q 005071 500 KITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC 578 (715)
Q Consensus 500 kp~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C 578 (715)
||+|++ +++|+||+.++|- ...|||+|.++..|..... +.|
T Consensus 182 kpLVSgSaLr~EGQLtvYny---------------------------------~~GPCYRClFP~Ppp~~~v-----t~C 223 (427)
T KOG2017|consen 182 KPLVSGSALRWEGQLTVYNY---------------------------------NNGPCYRCLFPNPPPPEAV-----TNC 223 (427)
T ss_pred CcccccccccccceeEEeec---------------------------------CCCceeeecCCCCcChHHh-----ccc
Confidence 999997 8999999999983 2578999996554432221 467
Q ss_pred c---ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCC
Q 005071 579 T---VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTA 655 (715)
Q Consensus 579 t---V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~a 655 (715)
. |.+|.+|+|+++||.|+||.++ |.+. .+.+.++.++|+...|+++++++ |.++|.+
T Consensus 224 ~dgGVlGpv~GviG~mQALE~iKli~----~~~~---------------~~s~~lllfdg~~~~~r~irlR~-r~~~C~~ 283 (427)
T KOG2017|consen 224 ADGGVLGPVTGVIGCMQALETIKLIA----GIGE---------------SLSGRLLLFDGLSGHFRTIRLRS-RRPKCAV 283 (427)
T ss_pred ccCceeecchhhhhHHHHHHHHHHHH----ccCc---------------cCCcceEEEecccceeEEEEecc-CCCCCcc
Confidence 6 9999999999999999999999 7663 56789999999999999999997 4599999
Q ss_pred CChh
Q 005071 656 CCST 659 (715)
Q Consensus 656 Cs~~ 659 (715)
||+.
T Consensus 284 Cg~n 287 (427)
T KOG2017|consen 284 CGKN 287 (427)
T ss_pred cCCC
Confidence 9985
No 5
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=5.1e-44 Score=369.59 Aligned_cols=234 Identities=26% Similarity=0.350 Sum_probs=204.8
Q ss_pred hhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
.||.||+.++.+| |++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+|+ |++|
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~K 79 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQPK 79 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCcH
Confidence 5899999998764 999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~ 142 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKL-----------------DDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPL 142 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998544 556788899999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccccc
Q 005071 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVT 581 (715)
Q Consensus 503 I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~ 581 (715)
|++ +.|+.|++.++. + +...+||+|.....|..... ...-+|+
T Consensus 143 v~~~~~g~~G~v~~~~---~-----------------------------~~~~~c~~C~~~~~~~~~~~----~~~~gv~ 186 (240)
T TIGR02355 143 VSGAAIRMEGQVSVFT---Y-----------------------------QDGEPCYRCLSRLFGENALS----CVEAGVM 186 (240)
T ss_pred EEEEecccEeEEEEEe---c-----------------------------CCCCCccccccccCCCCCCC----ccccCcc
Confidence 987 589999986542 1 12468999985545432110 0122489
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCC
Q 005071 582 RPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTAC 656 (715)
Q Consensus 582 ~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aC 656 (715)
+|.++++|++||.|+++.|+ |.+. ++-++.+.||+..++|+.+.+. ++++|++|
T Consensus 187 ~p~~~~~~~~~a~e~ik~l~----g~~~---------------~l~g~ll~~d~~~~~~~~~~~~--~~~~C~~C 240 (240)
T TIGR02355 187 APVVGVVGSLQAMEAIKVLA----GIGK---------------PLSGKILMIDAMTMSFREMKLP--KNPTCPVC 240 (240)
T ss_pred chHHHHHHHHHHHHHHHHHh----CCCC---------------CCCCeEEEEECCCCEEEEEecc--CCccCCCC
Confidence 99999999999999999999 6553 4567999999999999999997 88999999
No 6
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=5.1e-44 Score=393.11 Aligned_cols=236 Identities=20% Similarity=0.158 Sum_probs=208.7
Q ss_pred hhhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
..||+||+.+|++| |++|+++||+|||||||||++|++|+++|||+|+|||+|+|+.|||+||+||+.+|+ |++
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv---G~~ 92 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV---GKP 92 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC---CCc
Confidence 36999999998765 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
||++++++|+++||+++|+++...+ +.++..++++++|+||+|+|+.++|+++|++|.+.++|
T Consensus 93 Ka~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 93 KIESAKNRILEINPYCQVDLYETRL-----------------SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccc-----------------CHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998644 66778889999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc-
Q 005071 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT- 579 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct- 579 (715)
+|++ ..|+.||+.++. | ...+||+|.. |...... .-+.|.
T Consensus 156 ~v~~~~~g~~g~~~v~~---~------------------------------~~~~c~~c~~---~~~~~~~--~~~~c~~ 197 (390)
T PRK07411 156 NVYGSIFRFEGQATVFN---Y------------------------------EGGPNYRDLY---PEPPPPG--MVPSCAE 197 (390)
T ss_pred EEEEEEccCEEEEEEEC---C------------------------------CCCCChHHhc---CCCCCcc--cCCCCcc
Confidence 9987 589999998764 1 2368999994 4321111 113566
Q ss_pred --ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCC
Q 005071 580 --VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (715)
Q Consensus 580 --V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs 657 (715)
|.+|.+++||++||.|+||.|+ |.+. +|.++++.+|++.++|+.+.+. +.++|++|.
T Consensus 198 ~gvlg~~~~~~g~~~a~eaik~l~----g~~~---------------~l~~~l~~~d~~~~~~~~~~~~--~~~~c~~i~ 256 (390)
T PRK07411 198 GGVLGILPGIIGVIQATETIKIIL----GAGN---------------TLSGRLLLYNALDMKFRELKLR--PNPERPVIE 256 (390)
T ss_pred CCcCcchHHHHHHHHHHHHHHHHc----CCCC---------------CCCCeEEEEECCCCceeEEecc--CCCCCCccc
Confidence 9999999999999999999999 6553 5678999999999999999998 779999986
Q ss_pred hh
Q 005071 658 ST 659 (715)
Q Consensus 658 ~~ 659 (715)
..
T Consensus 257 ~~ 258 (390)
T PRK07411 257 KL 258 (390)
T ss_pred cc
Confidence 54
No 7
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=9.6e-43 Score=361.09 Aligned_cols=228 Identities=27% Similarity=0.352 Sum_probs=201.6
Q ss_pred hhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
.||.||+.+|.+| |++|+++||+|+|+||+||++|++|+++|||+|+|||+|.|+.|||+||++|+.+|+ |++|
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~K 87 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI---GQPK 87 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC---CChH
Confidence 6999999877664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i-----------------~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~ 150 (245)
T PRK05690 88 VESARAALARINPHIAIETINARL-----------------DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPL 150 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999998644 556778899999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005071 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (715)
Q Consensus 503 I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct-- 579 (715)
|++ ..|+.|++.++. | +...+||+|.....|.+.. .|.
T Consensus 151 v~~~~~g~~G~v~~~~---~-----------------------------~~~~~c~~c~~~~~~~~~~-------~~~~~ 191 (245)
T PRK05690 151 VSGAAIRMEGQVTVFT---Y-----------------------------QDDEPCYRCLSRLFGENAL-------TCVEA 191 (245)
T ss_pred EEeeeccCCceEEEEe---c-----------------------------CCCCceeeeccCCCCCCCC-------CcccC
Confidence 997 579999987664 2 1236899999554443221 343
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCC
Q 005071 580 -VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSC 653 (715)
Q Consensus 580 -V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C 653 (715)
|.+|.++++|+++|.|+++.|+ |.+. ++.++.+.+|+..++|+.+.+. ++++|
T Consensus 192 gv~~~~~~~~~~~~a~e~ik~l~----g~~~---------------~l~g~l~~~d~~~~~~~~~~~~--~~~~C 245 (245)
T PRK05690 192 GVMAPLVGVIGSLQAMEAIKLLT----GYGE---------------PLSGRLLLYDAMTMQFREMKLK--RDPGC 245 (245)
T ss_pred CccchHHHHHHHHHHHHHHHHHh----CCCC---------------CCCCeEEEEECCCCEEEEEEcC--CCcCC
Confidence 8999999999999999999999 6553 4668999999999999999887 78888
No 8
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=377.15 Aligned_cols=261 Identities=23% Similarity=0.278 Sum_probs=216.4
Q ss_pred hhhhhhhhcCCch---hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 345 NLKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 345 nlry~R~rllp~~---gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
..||+||++++.+ +|++|+++||+|||+||+||.+|++|+++|||+|+|||+|.|+.|||+||+||+++|+. .|++
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~-~g~~ 80 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAK-QKKP 80 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHcc-CCcc
Confidence 4699999987655 49999999999999999999999999999999999999999999999999999999981 2599
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
||++++++|+++||+++++++..++ +.++++++++++|+||+|+|+.++|+++|++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~-----------------~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip 143 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDV-----------------TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIP 143 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998543 56788889999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005071 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C-- 578 (715)
+|++ +.|+.|++.++. | +++|||+|.....|... ..|
T Consensus 144 ~i~~~~~g~~G~~~~~~---P------------------------------~~tpC~~Cl~~~~p~~~-------~~c~~ 183 (338)
T PRK12475 144 WIYGGCVGSYGVTYTII---P------------------------------GKTPCLRCLMEHVPVGG-------ATCDT 183 (338)
T ss_pred EEEEEecccEEEEEEEC---C------------------------------CCCCCHHHhcCCCCCCC-------CCCcc
Confidence 9987 589999976553 2 46799999944333211 134
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCC
Q 005071 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (715)
Q Consensus 579 -tV~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs 657 (715)
.|++|.++++|++||.|+||.|+ |.+. .|.++++.+|.+.++|+.+.+...+.++|++|+
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L~----g~~~---------------~l~~~Ll~~D~~~~~~~~~~~~~~k~p~Cp~Cg 244 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKILV----EDFE---------------ALRETFLSFDIWNNQNMSIKVNKQKKDTCPSCG 244 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHh----CCCC---------------CCcCeEEEEECCCCeEEEEEeccCCCCCCCcCC
Confidence 38899999999999999999888 5432 466799999999999999999744689999999
Q ss_pred hhHHHHHHHhCHHHHHHHhcCCchhhhccChhHH
Q 005071 658 STVVSEYRKRGMEFILQAINHPTYLEDLTGLTEL 691 (715)
Q Consensus 658 ~~v~~~y~~~g~~f~~~~~~~~~~le~~~Gl~~~ 691 (715)
.. ..+.++. .+...-.+.+||.+.+
T Consensus 245 ~~-------~~~~~l~--~~~~~~~~~LCgr~~v 269 (338)
T PRK12475 245 LT-------RTYPSLT--FENQTKTEVLCGRNTV 269 (338)
T ss_pred CC-------Ccccccc--cccCCCeeeccCCcee
Confidence 74 1222321 1223334677886554
No 9
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.6e-42 Score=374.72 Aligned_cols=238 Identities=26% Similarity=0.341 Sum_probs=208.2
Q ss_pred hhhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
+.||+||+++|.+| |++|+++||+|||||||||++|.+|+++|||+|+|||+|.|+.+||+||++|+++|+ +.|++
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di-g~g~~ 80 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV-KNNLP 80 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh-cCCCc
Confidence 57999999886665 899999999999999999999999999999999999999999999999999999999 11459
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
|+++++++|+++||.++++++..++ +.+++.++++++|+||+|+|+.++|++++++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~v~~~~~~~-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP 143 (339)
T PRK07688 81 KAVAAKKRLEEINSDVRVEAIVQDV-----------------TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIP 143 (339)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999988543 66788889999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005071 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C-- 578 (715)
+|++ ..|+.|++.++. | ++.+||+|.....|.+. +.|
T Consensus 144 ~i~~~~~g~~G~~~~~~---p------------------------------~~~pC~~Cl~~~~~~~~-------~~c~~ 183 (339)
T PRK07688 144 WIYGACVGSYGLSYTII---P------------------------------GKTPCLRCLLQSIPLGG-------ATCDT 183 (339)
T ss_pred EEEEeeeeeeeEEEEEC---C------------------------------CCCCCeEeecCCCCCCC-------CCCcc
Confidence 9997 589999876553 2 35689999954444321 345
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCC
Q 005071 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (715)
Q Consensus 579 -tV~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs 657 (715)
.|++|.++++|++||.|+|+.|+ |.+. .+.++++.+|++.++|+.+.+...+.++|++|+
T Consensus 184 ~gv~~p~~~~i~~~~a~ealk~l~----g~~~---------------~l~~~l~~~d~~~~~~~~~~~~~~~~~~Cp~Cg 244 (339)
T PRK07688 184 AGIISPAVQIVASYQVTEALKLLV----GDYE---------------ALRDGLVSFDVWKNEYSCMNVQKLKKDNCPSCG 244 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHh----CCCC---------------CCCCeEEEEECCCCeEEEEEecCCCCCCCCCCC
Confidence 48999999999999999999999 5442 466799999999999999998877789999999
Q ss_pred hh
Q 005071 658 ST 659 (715)
Q Consensus 658 ~~ 659 (715)
..
T Consensus 245 ~~ 246 (339)
T PRK07688 245 EK 246 (339)
T ss_pred CC
Confidence 73
No 10
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.9e-42 Score=376.52 Aligned_cols=233 Identities=24% Similarity=0.243 Sum_probs=204.4
Q ss_pred hhhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
..||.||+.+|++| |++|+++||+|+|||||||++|++|+++|||+|+|||+|.|+.|||+||++|+++|+ |++
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~ 82 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV---GQP 82 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC---CCh
Confidence 36999999887775 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
||++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|+++|++|+++++|
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRL-----------------TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998644 66788889999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc-
Q 005071 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT- 579 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct- 579 (715)
+|.+ ..|+.|++.++. | +..+||+|.. |....... -+.|.
T Consensus 146 ~v~~~~~g~~g~v~~~~---~------------------------------~~~~~~~~~~---~~~~~~~~--~~~c~~ 187 (355)
T PRK05597 146 HVWASILGFDAQLSVFH---A------------------------------GHGPIYEDLF---PTPPPPGS--VPSCSQ 187 (355)
T ss_pred EEEEEEecCeEEEEEEc---C------------------------------CCCCCHHHhC---CCCCCccC--CCCccc
Confidence 9997 589999998764 2 2457999994 43221110 13454
Q ss_pred --ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCC
Q 005071 580 --VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTAC 656 (715)
Q Consensus 580 --V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aC 656 (715)
|++|.++++|++||.|++|.|+ |.+. +|.++++.+|++.++|+.+.+. +.++|..+
T Consensus 188 ~gv~g~~~~~~g~~~a~e~ik~l~----g~~~---------------~l~~~l~~~d~~~~~~~~~~~~--~~~~~~~~ 245 (355)
T PRK05597 188 AGVLGPVVGVVGSAMAMEALKLIT----GVGT---------------PLIGKLGYYDSLDGTWEYIPVV--GNPAVLER 245 (355)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHh----CCCC---------------cCcCeEEEEECCCCeEEEEecc--CCCCCccc
Confidence 8999999999999999999999 6553 5678999999999999999998 67777433
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.7e-42 Score=360.34 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=200.9
Q ss_pred hhhhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 343 DLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 343 dlnlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
+-+.||.||+ +++..+|++|+++||+|||||||||++|.+|+++|||+|+|+|+|.|+.||++||++|+.+|+ |++
T Consensus 5 ~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~ 81 (287)
T PRK08223 5 DYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRP 81 (287)
T ss_pred cHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCc
Confidence 4568999997 446667999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcC
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTN 499 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~li~~~~~~~~ 499 (715)
||++++++|+++||.++|+.+...+ +.+++.++++++|+|+||+|++ ++|+++|++|++++
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l-----------------~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGI-----------------GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG 144 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccc-----------------CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999998644 6678899999999999999986 89999999999999
Q ss_pred CeEEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcc------c
Q 005071 500 KITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTAN------R 572 (715)
Q Consensus 500 kp~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~d------r 572 (715)
+|+|++ ..|+.|++.+++ | ..+||+|...+.|+.+..+ .
T Consensus 145 iP~V~~~~~g~~gqv~v~~---p-------------------------------~~p~~~~~f~~~~~~~~~~~~~~~~~ 190 (287)
T PRK08223 145 IPALTAAPLGMGTALLVFD---P-------------------------------GGMSFDDYFDLSDGMNEVEKAVRFLA 190 (287)
T ss_pred CCEEEEeccCCeEEEEEEc---C-------------------------------CCCchhhhcCCCCCCCchhhhcccCC
Confidence 999997 589999998775 2 2579999965532222211 1
Q ss_pred ccccccc---cc----------------CcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEE
Q 005071 573 TLDQQCT---VT----------------RPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQI 633 (715)
Q Consensus 573 tLdq~Ct---V~----------------~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~i 633 (715)
.+-+.|. |. +|++++||++||.|++|.|+ |.+. ..+.++.+++
T Consensus 191 ~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~----g~g~--------------~~~~~~~~~~ 252 (287)
T PRK08223 191 GLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILL----GRGR--------------VYAAPWFHQF 252 (287)
T ss_pred cCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHh----CCCC--------------cCCCCeEEEE
Confidence 2235675 67 88889999999999999999 7664 2346799999
Q ss_pred ecCCCCeeeEEecC
Q 005071 634 RGSLSQFSQMTLVG 647 (715)
Q Consensus 634 rg~~~~f~~~~l~~ 647 (715)
|++.++|++..+.+
T Consensus 253 d~~~~~~~~~~~~~ 266 (287)
T PRK08223 253 DAYRSRYVRTWRPG 266 (287)
T ss_pred EcCCceEEEEEecC
Confidence 99999999999975
No 12
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=6.4e-42 Score=373.85 Aligned_cols=239 Identities=21% Similarity=0.209 Sum_probs=209.1
Q ss_pred hhhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
..||.||+.+|++| |++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|++|||+||+||+.+|+ |++
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di---G~~ 95 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV---GRP 95 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC---CCH
Confidence 37999999988775 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
||++++++|+++||+++++++...+ +.+++.++++++|+||+|+|++++|+++|++|+++++|
T Consensus 96 Ka~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 96 KVEVAAERLKEIQPDIRVNALRERL-----------------TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred HHHHHHHHHHHHCCCCeeEEeeeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998644 66788899999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005071 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C-- 578 (715)
+|.+ ..|+.||+.++. |. +..+.+||+|.. |.....+ .-+.|
T Consensus 159 ~v~~~~~g~~G~v~v~~---~~---------------------------~~~~~~~~~~l~---~~~~~~~--~~~~c~~ 203 (370)
T PRK05600 159 LVWGTVLRFHGELAVFN---SG---------------------------PDHRGVGLRDLF---PEQPSGD--SIPDCAT 203 (370)
T ss_pred EEEEEEecCEEEEEEEe---cC---------------------------CCCCCCCcHhhC---CCCCccc--cCCCCcc
Confidence 9997 589999998764 10 012468999994 4322111 11357
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCC
Q 005071 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (715)
Q Consensus 579 -tV~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs 657 (715)
.|++|.+++||++||.|+++.|+ |.+. ++.++++.+|++.++|+.+.+. ++++|++|.
T Consensus 204 ~gvlg~~~~~ig~~~a~eaik~l~----g~g~---------------~l~g~ll~~d~~~~~~~~~~~~--~~~~c~~~~ 262 (370)
T PRK05600 204 AGVLGATTAVIGALMATEAIKFLT----GIGD---------------VQPGTVLSYDALTATTRSFRVG--ADPARPLVT 262 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHh----CCCC---------------CCcCcEEEEECCCCEEEEEEec--CCCCCCccc
Confidence 48999999999999999999999 6653 4668999999999999999998 779999988
Q ss_pred hh
Q 005071 658 ST 659 (715)
Q Consensus 658 ~~ 659 (715)
..
T Consensus 263 ~~ 264 (370)
T PRK05600 263 RL 264 (370)
T ss_pred cc
Confidence 65
No 13
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=8e-42 Score=376.10 Aligned_cols=234 Identities=22% Similarity=0.184 Sum_probs=204.0
Q ss_pred hhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
.||+||+.+|++| |++|+++||+|||||||||++|++|+++|||+|+|||+|.|+.+||+||++|+.+|+ |++|
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~K 97 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV---GRSK 97 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC---CChH
Confidence 6999999887665 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
|++++++|+++||+++++.+..+| +.+++.++++++|+||+|+|+.++|+++|++|+++++|+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRL-----------------DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccC-----------------ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999988644 566788899999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005071 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (715)
Q Consensus 503 I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct-- 579 (715)
|++ ..|+.|++.++....| ++..+||+|.+...|... .-+.|.
T Consensus 161 v~~~~~g~~G~v~~~~~~~~-----------------------------~~~~~c~~c~~~~~~~~~-----~~~~~~~~ 206 (392)
T PRK07878 161 VWGSIYRFEGQASVFWEDAP-----------------------------DGLGLNYRDLYPEPPPPG-----MVPSCAEG 206 (392)
T ss_pred EEEEeccCEEEEEEEecCCC-----------------------------CCCCCeeeeecCCCCCcc-----CCCCCccC
Confidence 997 5899999986642111 135689999954322211 113564
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCC
Q 005071 580 -VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCT 654 (715)
Q Consensus 580 -V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~ 654 (715)
|++|.+++||++||.|+|+.|+ |.+. +|-++++.||++.++|+.+.+. ++++|+
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~----g~~~---------------~~~~~l~~~d~~~~~~~~~~~~--~~~~C~ 261 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLIT----GIGE---------------PLLGRLMVYDALEMTYRTIKIR--KDPSTP 261 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHh----CCCC---------------CCcCcEEEEECCCCceeeEeec--cCCCCC
Confidence 9999999999999999999999 6653 4567999999999999999998 678885
No 14
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.8e-40 Score=363.50 Aligned_cols=239 Identities=26% Similarity=0.319 Sum_probs=207.1
Q ss_pred hhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
.||.||+.++.+| |++|+++||+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++|+++|+ |++|
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di---G~~K 190 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV---GQPK 190 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC---CCcH
Confidence 5799998876664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~ 253 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERV-----------------TSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------ChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987543 556788899999999999999999999999999999999
Q ss_pred EEee-eCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005071 503 ITAA-LGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (715)
Q Consensus 503 I~aa-lG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct-- 579 (715)
|+++ .|+.|++.++. |. ..++..+||+|.. |..... ..-+.|.
T Consensus 254 i~~~~~g~~g~v~~~~---p~--------------------------~~~~~~~c~~c~~---~~~~~~--~~~~~~~~~ 299 (376)
T PRK08762 254 VYGAVFRFEGQVSVFD---AG--------------------------RQRGQAPCYRCLF---PEPPPP--ELAPSCAEA 299 (376)
T ss_pred EEEEeccCEEEEEEEe---CC--------------------------CCCCCCCCHhhcC---CCCCCc--ccCCCCccC
Confidence 9984 79999998765 20 0024579999994 322111 1113464
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEecCCCCCCCCCCCh
Q 005071 580 -VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACCS 658 (715)
Q Consensus 580 -V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l~~~~~~~C~aCs~ 658 (715)
|.+|.++++|++||.|+++.|+ |.+. +|.++++.+|++.++|+.+.+. ++++|++|+.
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~----g~~~---------------~~~~~~~~~d~~~~~~~~~~~~--~~~~C~~C~~ 358 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLL----GIGD---------------PLTGRLLTFDALAMRFRELRLP--PDPHCPVCAP 358 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHh----CCCC---------------CCCCeEEEEECCCCeEEEEecc--CCCCCCCCCC
Confidence 8999999999999999999999 6543 4667999999999999999998 8999999987
Q ss_pred h
Q 005071 659 T 659 (715)
Q Consensus 659 ~ 659 (715)
.
T Consensus 359 ~ 359 (376)
T PRK08762 359 G 359 (376)
T ss_pred C
Confidence 3
No 15
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=336.07 Aligned_cols=221 Identities=22% Similarity=0.174 Sum_probs=192.8
Q ss_pred hhhhhhhcC-CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCC-cHH
Q 005071 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKA 423 (715)
Q Consensus 346 lry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~-~KA 423 (715)
.||.||+.+ ...+|++|+++||+|+||||+||++|++|+++|||+|+|+|+|.|+.||++||++|+.+|+ |+ +|+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~~k~ 84 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---GKNPKP 84 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---CchHHH
Confidence 689999855 4445999999999999999999999999999999999999999999999999999999999 99 699
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-----------------SEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987533 5567788999999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccC
Q 005071 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (715)
Q Consensus 504 ~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~ 582 (715)
++ ..|+.|++.+.. | ++++||+|.. |..... ...+.+.+
T Consensus 148 ~g~~~g~~G~v~~~~---p------------------------------~~~~c~~~~~---~~~~~~----~~~~~~~~ 187 (231)
T PRK08328 148 HGAVEGTYGQVTTIV---P------------------------------GKTKRLREIF---PKVKKK----KGKFPILG 187 (231)
T ss_pred EEeeccCEEEEEEEC---C------------------------------CCCCCHHHhC---CCCCCc----cccCCcCc
Confidence 97 589999997653 2 3568999994 432111 13567999
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEe
Q 005071 583 PGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTL 645 (715)
Q Consensus 583 Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l 645 (715)
|.+++||+++|.|+++.|+ |.+. ++-++.+.+|++.++|+.+++
T Consensus 188 ~~~~ii~~~~a~e~~k~l~----g~~~---------------~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 188 ATAGVIGSIQAMEVIKLIT----GYGE---------------PLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred hHHHHHHHHHHHHHHHHHh----CCCC---------------cccCeEEEEECCCCEEEEeeC
Confidence 9999999999999999999 6553 456799999999999998764
No 16
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=2e-39 Score=332.52 Aligned_cols=221 Identities=31% Similarity=0.391 Sum_probs=192.9
Q ss_pred hhhhhhcCCch---hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 347 ry~R~rllp~~---gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
||+||+.++.+ +|++|+++||+|+||||+||++|++|+++|||+|+|+|+|.|+++|++||++|+.+|+ |++||
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 79999877444 4899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i-----------------~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERL-----------------DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLV 140 (228)
T ss_pred HHHHHHHHHhCCCCEEEEeccee-----------------CHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999998543 5677888999999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc---c
Q 005071 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC---T 579 (715)
Q Consensus 504 ~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C---t 579 (715)
++ ..|+.|++.++. | .+.+||.|.....|... ++.| .
T Consensus 141 ~~g~~g~~g~v~~~~---p------------------------------~~~~c~~c~~~~~~~~~------~~~~~~~~ 181 (228)
T cd00757 141 SGAVLGFEGQVTVFI---P------------------------------GEGPCYRCLFPEPPPPG------VPSCAEAG 181 (228)
T ss_pred EEEeccCEEEEEEEC---C------------------------------CCCCCccccCCCCCCCC------CCccccCC
Confidence 97 479999987653 2 35789999855443321 1233 3
Q ss_pred ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeeeEEe
Q 005071 580 VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTL 645 (715)
Q Consensus 580 V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~~~l 645 (715)
+++|.++++|+++|.|+++.|+ |.+. ++.++.+.||.+.+.|+++.+
T Consensus 182 ~~~~~~~~~a~l~a~e~i~~l~----g~~~---------------~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 182 VLGPLVGVIGSLQALEALKILL----GIGE---------------PLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred cchhHHHHHHHHHHHHHHHHHh----CCCC---------------cCcCeEEEEECCCCEEEEEeC
Confidence 8999999999999999999999 5432 456899999999999998764
No 17
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=9.8e-39 Score=322.13 Aligned_cols=195 Identities=27% Similarity=0.372 Sum_probs=171.6
Q ss_pred hhhhhhcCCch---hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 347 ry~R~rllp~~---gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
||+||+.++.+ +|++|+++||+|+|+||+||++|++|+++|||+|+++|+|.|+++||+||++|+++|+ |++||
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 79999987555 4899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERV-----------------TAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcC-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999988644 5567788999999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc---c
Q 005071 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC---T 579 (715)
Q Consensus 504 ~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~C---t 579 (715)
.+ ..|+.|++.+.. | .++++||.|.....+.. ...| +
T Consensus 141 ~~~~~g~~G~~~~~~---p-----------------------------~~~~~c~~c~~~~~~~~-------~~~~~~~~ 181 (202)
T TIGR02356 141 SAAVVGFGGQLMVFD---P-----------------------------GGEGPCLRCLFPDIADT-------GPSCATAG 181 (202)
T ss_pred EEEeccCeEEEEEEe---C-----------------------------CCCCCChhhcCCCCccc-------CCCCccCC
Confidence 97 589999998654 2 12578999984331110 1234 4
Q ss_pred ccCcchHHHHHHHHHHHHHHH
Q 005071 580 VTRPGLAPIASALAVELFVGV 600 (715)
Q Consensus 580 V~~Pgv~~ias~~A~Ell~~l 600 (715)
+++|.++++|+++|.|++|.|
T Consensus 182 ~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 182 VIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred ccchHHHHHHHHHHHHHHHhC
Confidence 899999999999999999975
No 18
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-37 Score=323.35 Aligned_cols=236 Identities=28% Similarity=0.380 Sum_probs=205.7
Q ss_pred hhhhhhhcCCchh---HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
.||+||..++.++ |++|+.+||+|+|+||+||+++++|+++|||+++|+|+|+|+.+||+||++|+.+|+ |++|
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di---g~~K 85 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV---GKPK 85 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc---CCcH
Confidence 6899999888776 999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
+++|++.|+++||.++++++... .+.+++.++++++|+|++|+|++++|+++|++|+++++|+
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~-----------------l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pl 148 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLER-----------------LDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPL 148 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeecc-----------------cChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999854 4777889999999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005071 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (715)
Q Consensus 503 I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~Ct-- 579 (715)
|++ +.|++|++.++. | ....+||+|+....|..... ...|.
T Consensus 149 i~~~~~~~~g~~~~~~---~-----------------------------~~~~~c~~~~~~~~~~~~~~----~~~c~~~ 192 (254)
T COG0476 149 VHGGAIGFEGQVTVII---P-----------------------------GDKTPCYRCLFPEKPPPGLV----PTSCDEA 192 (254)
T ss_pred EeeeeccceEEEEEEe---c-----------------------------CCCCCcccccCCCCCCcccc----ccccccC
Confidence 987 589999998875 2 12478999996655542221 11355
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCC-CeeeEEecCCCCCC-CCCC
Q 005071 580 -VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLS-QFSQMTLVGHSSNS-CTAC 656 (715)
Q Consensus 580 -V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~-~f~~~~l~~~~~~~-C~aC 656 (715)
|++|.++.+++.+|.|+++.++ |.+. .++-+....++++.+ .|+++.+. +.+. |+.|
T Consensus 193 gv~~~~~~~~~~~~~~~~~k~~~----g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c 252 (254)
T COG0476 193 GVLGPLVGVVGSLQALEAIKLLT----GIGL--------------EPLIGRLLLYDALDMERFRTLKLR--RRPISCPVC 252 (254)
T ss_pred CccccccchhhhHHHHHHHHHhc----CCCc--------------cccccceeeeechhcccchhhhcc--cCCCCCCcC
Confidence 9999999999999999999999 5441 134466777888888 89999887 5555 9999
Q ss_pred C
Q 005071 657 C 657 (715)
Q Consensus 657 s 657 (715)
+
T Consensus 253 ~ 253 (254)
T COG0476 253 G 253 (254)
T ss_pred C
Confidence 8
No 19
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.1e-36 Score=326.46 Aligned_cols=230 Identities=15% Similarity=0.198 Sum_probs=195.0
Q ss_pred hhhhhhhcCCch-----hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCC
Q 005071 346 LKLMRWRQLPSL-----NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (715)
Q Consensus 346 lry~R~rllp~~-----gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~ 420 (715)
.||.||+++|++ +|++|++++|+ ||||||.+|.+|++ |||+|+|||+|.|+.|||+ .||+.+|+ |+
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di---G~ 123 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI---LK 123 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc---Cc
Confidence 699999988663 49999999999 99999999999999 9999999999999999999 99999999 99
Q ss_pred cHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHH--HHHHHHhc
Q 005071 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL--PTLLCANT 498 (715)
Q Consensus 421 ~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~l--i~~~~~~~ 498 (715)
+|+++|+++|.++||.++++.+ .++++++|+|++|+|++++|++ +|++|.++
T Consensus 124 ~K~~~a~~~L~~lnp~v~i~~~--------------------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 124 KDIRDLTSNLDALELTKNVDEL--------------------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred HHHHHHHHHHHHhCCCCEEeeH--------------------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9999999999999999998653 3578999999999999999987 99999999
Q ss_pred CCeEEEe-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCC---------CC--
Q 005071 499 NKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVA---------PT-- 566 (715)
Q Consensus 499 ~kp~I~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~a---------P~-- 566 (715)
++|+|.+ ..|+.|++..+. | +++|||+|..... |.
T Consensus 178 ~~PlV~gav~g~~Gqv~~~~---P------------------------------~~t~C~~Cl~~r~~~~~~~~~~~~~~ 224 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITCTL---P------------------------------PETGCFECLERRLLSRLDWRLYGVFT 224 (318)
T ss_pred CCCEEEEEEccCEEEEEEEe---C------------------------------CCCCcHHHccchhhcccccccccccc
Confidence 9999987 589999987653 2 2469999994311 11
Q ss_pred -CCCcccccccccc---ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCCeee
Q 005071 567 -DSTANRTLDQQCT---VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQ 642 (715)
Q Consensus 567 -~s~~drtLdq~Ct---V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~f~~ 642 (715)
...+. .+.|. |++|.++++|+++|.|++ .++ |.+. ..+-++++.|+++...|+.
T Consensus 225 ~~~~~~---~~~~~~~gv~gp~~giigsl~a~Eai-~i~----g~g~--------------~~l~g~ll~id~~t~~~~~ 282 (318)
T TIGR03603 225 EYLVKA---ENNVSTAELIFPLLNIKKNLVVSEIF-AIG----SLGT--------------SKFEGRLLSINLPTLEIQF 282 (318)
T ss_pred cccCCC---CCCCccCCeehhHHHHHHHHHHHHHH-HHh----CCCC--------------cccCCeEEEEECCCCeEEE
Confidence 00110 12343 799999999999999999 777 5443 2355789999999999999
Q ss_pred EEecCCCCCCCCCCChhHHHHHHHh
Q 005071 643 MTLVGHSSNSCTACCSTVVSEYRKR 667 (715)
Q Consensus 643 ~~l~~~~~~~C~aCs~~v~~~y~~~ 667 (715)
+.+. +.++|++||...--+|++.
T Consensus 283 ~~l~--k~p~Cp~CG~~~~~~~~~~ 305 (318)
T TIGR03603 283 QDIL--KQSCCSTCGTFNKIKFEEQ 305 (318)
T ss_pred EecC--CCCCCcccCCccccchhhh
Confidence 9997 8899999999877777764
No 20
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4.6e-34 Score=287.29 Aligned_cols=172 Identities=22% Similarity=0.228 Sum_probs=156.2
Q ss_pred hhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHH
Q 005071 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (715)
Q Consensus 346 lry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAe 424 (715)
.||+||+ +++..+|++|+++||+|+|+||+||++|++|+++|||+|+++|+|.|+.+|++||++|+.+|+ |++||+
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~ 78 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE 78 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence 3799997 556667999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005071 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (715)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~ 504 (715)
+++++|+++||+++++.+...+ + +...++++++|+||+|+|+.++|..++++|+++++|+|.
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~-----------------~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDI-----------------S-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCc-----------------c-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999987543 2 335678899999999999999999999999999999998
Q ss_pred e-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCc
Q 005071 505 A-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRP 583 (715)
Q Consensus 505 a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~P 583 (715)
+ ..|+.|+++.. . .+|
T Consensus 141 ~~~~G~~G~v~~d-------------------------------------~--------------------------~~p 157 (197)
T cd01492 141 TGVHGLFGFVFAD-------------------------------------L--------------------------LAP 157 (197)
T ss_pred EEecCCEEEEEEe-------------------------------------c--------------------------ccc
Confidence 7 47888886521 0 679
Q ss_pred chHHHHHHHHHHHHHHHh
Q 005071 584 GLAPIASALAVELFVGVL 601 (715)
Q Consensus 584 gv~~ias~~A~Ell~~ll 601 (715)
.++++|+++|.|+++.|+
T Consensus 158 ~~~~~~~~~~~e~~k~~~ 175 (197)
T cd01492 158 VAAVVGGILAQDVINALS 175 (197)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999
No 21
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1e-33 Score=285.00 Aligned_cols=190 Identities=20% Similarity=0.242 Sum_probs=165.1
Q ss_pred hhhhhhc-CCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCc--chhcCCCCcHH
Q 005071 347 KLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL--DDCLNGGDFKA 423 (715)
Q Consensus 347 ry~R~rl-lp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~--~Di~~~G~~KA 423 (715)
||+||+. ++..+|++|+++||+|+|+||+||++|++|+++|||+|+++|+|.|+.+|++||++|+. +|+ |++||
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 6899975 45567999999999999999999999999999999999999999999999999999998 889 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
++++++|+++||+++++.+...+ ....++..++++++|+||+|+|+.+.|..++++|+++++|+|
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~---------------~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i 142 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDS---------------LSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFI 142 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEeccc---------------ccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987533 112456778899999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccC
Q 005071 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (715)
Q Consensus 504 ~a-alG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~ 582 (715)
.+ ..|+.|+++.. .
T Consensus 143 ~~~~~G~~G~v~~~-------------------------------------~---------------------------- 157 (198)
T cd01485 143 SCATYGLIGYAFFD-------------------------------------F---------------------------- 157 (198)
T ss_pred EEEeecCEEEEEEc-------------------------------------h----------------------------
Confidence 87 57998887521 0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEecCCCC
Q 005071 583 PGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQ 639 (715)
Q Consensus 583 Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg~~~~ 639 (715)
|.++++|++||.|+|+.|+ |.+. ++ +..+.+|++.++
T Consensus 158 p~~~~~~~~~~~e~~k~l~----~~~~---------------~~-~~~~~~d~~~~~ 194 (198)
T cd01485 158 PIAAFLGGVVAQEAIKSIS----GKFT---------------PL-NNLYIYDGFEST 194 (198)
T ss_pred hHHHHHHHHHHHHHHHHHh----CCCC---------------cc-CcEEEEECcccc
Confidence 8999999999999999999 6543 34 356668876553
No 22
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=8.9e-33 Score=281.00 Aligned_cols=189 Identities=22% Similarity=0.181 Sum_probs=158.3
Q ss_pred CCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhh
Q 005071 354 LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI 433 (715)
Q Consensus 354 lp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~i 433 (715)
++..+|++|+++||+|+||||+||.+|++|+++||++|+|+|.|.|+.+||+||+++ .+|+ |++||++++++|+++
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~~a~~~l~~l 93 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVEALKENLLEI 93 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHHHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999999999865 7899 999999999999999
Q ss_pred CCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEe-eeCCce
Q 005071 434 FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDS 511 (715)
Q Consensus 434 nP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~-~kp~I~a-alG~~g 511 (715)
||+++++.+...+ +.+++.++++++|+||+|+|+.++|..++..|.++ ++|+|.+ +.+..+
T Consensus 94 np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 94 NPFVEIEAHNEKI-----------------DEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred CCCCEEEEEeeec-----------------CHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999998654 55677889999999999999999999999999999 9999987 566666
Q ss_pred EEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHH
Q 005071 512 FLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASA 591 (715)
Q Consensus 512 ~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~Pgv~~ias~ 591 (715)
++...+ |. .....||.|.+... . ..+..+|++|.+++||++
T Consensus 157 ~~~~~~---~~----------------------------~~~~~~~~~~~~~~----~----~~~~~gv~~~~~~~i~~~ 197 (212)
T PRK08644 157 DSNSIK---TR----------------------------RIGKNFYIVGDFVT----E----AKPGNPLMAPRVNIAAAH 197 (212)
T ss_pred CceEEE---ec----------------------------CCCCCeeECCCCCc----c----cCCCCCccchHHHHHHHH
Confidence 654332 10 01235776643111 0 013456899999999999
Q ss_pred HHHHHHHHHhc
Q 005071 592 LAVELFVGVLH 602 (715)
Q Consensus 592 ~A~Ell~~ll~ 602 (715)
||.|+|+.|++
T Consensus 198 ~a~ealk~l~~ 208 (212)
T PRK08644 198 QANLVLRLILG 208 (212)
T ss_pred HHHHHHHHHhC
Confidence 99999999993
No 23
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.6e-31 Score=282.75 Aligned_cols=131 Identities=26% Similarity=0.299 Sum_probs=119.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
||+|||||||||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc--------CCeEEEe-eeCCceEEEEE
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--------NKITITA-ALGFDSFLVMR 516 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~--------~kp~I~a-alG~~g~vv~~ 516 (715)
| . +...++++++|+||+|+|+.++|.++++.|... ++|+|.+ ..|+.|++.+.
T Consensus 78 i-----------------~-~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi 139 (291)
T cd01488 78 I-----------------Q-DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVI 139 (291)
T ss_pred c-----------------C-chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEE
Confidence 5 1 123578999999999999999999999988764 4999987 58999998655
Q ss_pred c
Q 005071 517 H 517 (715)
Q Consensus 517 ~ 517 (715)
.
T Consensus 140 ~ 140 (291)
T cd01488 140 L 140 (291)
T ss_pred c
Confidence 3
No 24
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.97 E-value=2.2e-30 Score=261.36 Aligned_cols=190 Identities=21% Similarity=0.213 Sum_probs=151.3
Q ss_pred hhhhcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHH
Q 005071 349 MRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (715)
Q Consensus 349 ~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~ 428 (715)
+++|.- ...|++|+++||+|+||||+||++|.+|+++||++|+|+|.|.|+.+||+||. |..+|+ |++|++++++
T Consensus 7 ~~~~~~-~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~i---G~~Ka~~~~~ 81 (200)
T TIGR02354 7 LVARHT-PKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQV---GEPKTEALKE 81 (200)
T ss_pred HHHhcC-HHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhC---CCHHHHHHHH
Confidence 344443 34699999999999999999999999999999999999999999999999996 677899 9999999999
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHH-HHHHhcCC-eEEEee
Q 005071 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPT-LLCANTNK-ITITAA 506 (715)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~-~~~~~~~k-p~I~aa 506 (715)
+|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|.++. .++..++. +++. +
T Consensus 82 ~l~~inp~~~i~~~~~~i-----------------~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~ 143 (200)
T TIGR02354 82 NISEINPYTEIEAYDEKI-----------------TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-A 143 (200)
T ss_pred HHHHHCCCCEEEEeeeeC-----------------CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-E
Confidence 999999999999988644 66788899999999999999999998765 45555554 4454 5
Q ss_pred eCCceEE--EEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcc
Q 005071 507 LGFDSFL--VMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPG 584 (715)
Q Consensus 507 lG~~g~v--v~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~Pg 584 (715)
.|+.|+. ..+. + ......||.|.|...+ . .....|++|.
T Consensus 144 ~g~~g~~~~~~~~---~----------------------------~~~~~~~~~~~~~~~~--~------~~~~g~~~p~ 184 (200)
T TIGR02354 144 SGLAGYDDANSIK---T----------------------------RKISKHFYLCGDGKSD--A------KQGLGLMAPR 184 (200)
T ss_pred eccccCCCCceEE---e----------------------------cccCCCEEEcCCCCCc--c------cCCCCCchhH
Confidence 6666665 2221 1 0123579999643211 0 0233589999
Q ss_pred hHHHHHHHHHHHHHHH
Q 005071 585 LAPIASALAVELFVGV 600 (715)
Q Consensus 585 v~~ias~~A~Ell~~l 600 (715)
|+++|++||.|+|+.+
T Consensus 185 v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 185 VQICAAHQANLVLELI 200 (200)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999864
No 25
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=304.43 Aligned_cols=162 Identities=16% Similarity=0.098 Sum_probs=144.1
Q ss_pred hhhhhhhhhhhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcch
Q 005071 336 RLAISAADLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD 414 (715)
Q Consensus 336 ~la~~a~dlnlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~D 414 (715)
++.....=.+.||.||+ ++...+|+||+++||+|+||||+||++|.+|+++|||+|+|+|+|+|+.||||||++|+.+|
T Consensus 303 ~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~d 382 (989)
T PRK14852 303 KLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIAS 382 (989)
T ss_pred hHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhh
Confidence 44443444467899996 45555799999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh--HHHHHHH
Q 005071 415 CLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPT 492 (715)
Q Consensus 415 i~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~li~ 492 (715)
+ |++||++++++|++|||+++|+.+...| +.+++.++++++|+||||+|+. +.|..++
T Consensus 383 I---G~~Kaevaa~~l~~INP~v~I~~~~~~I-----------------~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~ 442 (989)
T PRK14852 383 F---GRGKLDVMTERALSVNPFLDIRSFPEGV-----------------AAETIDAFLKDVDLLVDGIDFFALDIRRRLF 442 (989)
T ss_pred C---CChHHHHHHHHHHHHCCCCeEEEEecCC-----------------CHHHHHHHhhCCCEEEECCCCccHHHHHHHH
Confidence 9 9999999999999999999999998644 7788999999999999999975 4566677
Q ss_pred HHHHhcCCeEEEe-eeCCceEEEEEc
Q 005071 493 LLCANTNKITITA-ALGFDSFLVMRH 517 (715)
Q Consensus 493 ~~~~~~~kp~I~a-alG~~g~vv~~~ 517 (715)
..|+++++|+|++ ..|+.|++.++.
T Consensus 443 ~~c~~~~IP~I~ag~~G~~g~v~v~~ 468 (989)
T PRK14852 443 NRALELGIPVITAGPLGYSCALLVFM 468 (989)
T ss_pred HHHHHcCCCEEEeeccccCeeEEEEc
Confidence 7799999999997 589999998775
No 26
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=2.6e-30 Score=255.32 Aligned_cols=172 Identities=25% Similarity=0.243 Sum_probs=145.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
||+|+||||+||++|++|+++||++|+|+|.|.|+.+|++||++ ..+|+ |++|+++++++|+++||+++++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 69999999999999999999999999999999999999999995 57899 999999999999999999999999864
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEe-eeCCceEEEEEcCCCCCc
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDSFLVMRHGPGPFS 523 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~-~kp~I~a-alG~~g~vv~~~g~~p~~ 523 (715)
+ +.+++.++++++|+||+|+|+.++|..+++.|.++ ++|+|.+ +.|+.|++..+. |.
T Consensus 77 ~-----------------~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~---~~- 135 (174)
T cd01487 77 I-----------------DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIK---TK- 135 (174)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEE---ec-
Confidence 4 55678889999999999999999999777777766 9999987 578888876543 10
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHHHHHHHH
Q 005071 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELF 597 (715)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV~~Pgv~~ias~~A~Ell 597 (715)
....+||.|.+.. |. . . ....|++|.++++|++||.|+|
T Consensus 136 ---------------------------~~~~~~~~~~~~~-~~-~-~-----~~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 136 ---------------------------KISDNFYICGDLV-NE-A-K-----EGLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred ---------------------------CCCCCeEEeecCC-CC-C-C-----CCcCccccHHHHHHHHHHHhhC
Confidence 0134799998422 11 1 0 2445899999999999999985
No 27
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=2.8e-30 Score=266.16 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=121.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
||+|+|+|||||+++++|+++|||+|+++|.|.|+.|||+||+||+.+|+ |++||++|+++|+++||+++++.+..+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999998865
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEE
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMR 516 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~ 516 (715)
| + ...+...++++++|+||+|+|+.++|.+++++|+.+++|+|++ ..|+.|++.+.
T Consensus 78 i-------~--------~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi 134 (234)
T cd01484 78 V-------G--------PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVI 134 (234)
T ss_pred C-------C--------hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEE
Confidence 4 0 0112235789999999999999999999999999999999997 58999998765
No 28
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=6.9e-30 Score=296.82 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=142.2
Q ss_pred hhhhhhhhhcC-CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 344 LNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 344 lnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
...||.||+.+ ...+|++|+++||+|+|+||+||.+|.+|+++|||+|+|||+|.|++||||||++|+.+|+ |++|
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G~~K 98 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---GRPK 98 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---CCHH
Confidence 35789999744 4456999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHhcCC
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNK 500 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~esR~li~~~~~~~~k 500 (715)
|++++++|++|||+++|+.+...| +.+++.++++++|+||||+|+ .+.|.+++..|+++++
T Consensus 99 v~v~~~~l~~inP~~~I~~~~~~i-----------------~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~i 161 (679)
T PRK14851 99 LAVMKEQALSINPFLEITPFPAGI-----------------NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGI 161 (679)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCC-----------------ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999998654 677889999999999999997 5789999999999999
Q ss_pred eEEEe-eeCCceEEEEEc
Q 005071 501 ITITA-ALGFDSFLVMRH 517 (715)
Q Consensus 501 p~I~a-alG~~g~vv~~~ 517 (715)
|+|++ ..|+.|++.++.
T Consensus 162 P~i~~g~~G~~g~~~~~~ 179 (679)
T PRK14851 162 PVITAGPLGYSSAMLVFT 179 (679)
T ss_pred CEEEeecccccceEEEEc
Confidence 99997 589999998774
No 29
>PRK07877 hypothetical protein; Provisional
Probab=99.97 E-value=7.5e-30 Score=297.36 Aligned_cols=146 Identities=19% Similarity=0.198 Sum_probs=134.4
Q ss_pred hhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcC-CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH
Q 005071 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (715)
Q Consensus 345 nlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GV-g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (715)
..||.|++ ++...+|++|+++||+|+|+| +||.+|.+|+++|| |+|+|||+|.|+.|||||| +|+..|+ |++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di---G~~K 161 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL---GVNK 161 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc---ccHH
Confidence 57899998 556678999999999999997 99999999999996 9999999999999999998 6899999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 423 Aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
|++++++|++|||+++|+.+...| +.+++.++++++|+||||+||+++|+++|+.|.+++||+
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i-----------------~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGL-----------------TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999654 788999999999999999999999999999999999999
Q ss_pred EEeeeCCceEE
Q 005071 503 ITAALGFDSFL 513 (715)
Q Consensus 503 I~aalG~~g~v 513 (715)
|+++ |-.|++
T Consensus 225 i~~~-~~~g~~ 234 (722)
T PRK07877 225 LMAT-SDRGLL 234 (722)
T ss_pred EEEc-CCCCCc
Confidence 9985 222555
No 30
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=5.6e-29 Score=235.01 Aligned_cols=133 Identities=36% Similarity=0.478 Sum_probs=122.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
|++||+|+|+|++||++|++|+++|||+|+|+|+|.|+++|++||++|+.+|+ |++|+++++++|+++||+++++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEE
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~ 515 (715)
...+ +.++..++++++|+||+|+|+.+.|.+++++|+++++|+|++ ..|+.|+++|
T Consensus 78 ~~~~-----------------~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 78 PEKI-----------------DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp ESHC-----------------SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eccc-----------------ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8643 667888999999999999999999999999999999999997 4899999976
No 31
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.96 E-value=3.5e-29 Score=264.51 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=134.3
Q ss_pred hhhhhcC-CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHH
Q 005071 348 LMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAA 426 (715)
Q Consensus 348 y~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaa 426 (715)
|+||+.+ +..+|+||++++|||+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+ |++||+++
T Consensus 2 YsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea~ 78 (286)
T cd01491 2 YSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEAS 78 (286)
T ss_pred cccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHHH
Confidence 8899744 4456999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-
Q 005071 427 VKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA- 505 (715)
Q Consensus 427 a~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a- 505 (715)
+++|+++||+++++.+...+ + .+++.++|+||+|.|+.+.|..+|++|+++++|+|.+
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~-----------------~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPL-----------------T----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHCCCCEEEEEeccC-----------------C----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999999999999987421 2 3577899999999999999999999999999999987
Q ss_pred eeCCceEEEEEc
Q 005071 506 ALGFDSFLVMRH 517 (715)
Q Consensus 506 alG~~g~vv~~~ 517 (715)
..|+.|+++...
T Consensus 138 ~~G~~G~vf~df 149 (286)
T cd01491 138 TRGLFGSIFCDF 149 (286)
T ss_pred ccccEEEEEecC
Confidence 689999998754
No 32
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=6.4e-29 Score=265.41 Aligned_cols=133 Identities=24% Similarity=0.345 Sum_probs=122.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
||+|||+||+||++|++|+++|||+|+|+|.|.|+.+||+||+||+.+|+ |++||++|+++|+++||+++++++..+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEEc
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~~ 517 (715)
| .+.....++++++|+||+|.|+.++|.+++++|+.+++|+|.+ ..|+.|++.+..
T Consensus 78 i----------------~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~ 134 (312)
T cd01489 78 I----------------KDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIK 134 (312)
T ss_pred C----------------CCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEc
Confidence 5 1112345788999999999999999999999999999999987 589999998764
No 33
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=2.3e-28 Score=293.83 Aligned_cols=191 Identities=19% Similarity=0.203 Sum_probs=157.2
Q ss_pred cccccEEe--c-CCcccce----EecccCCCChh-hhh-hhhhhhhhhhhhhhcC-CchhHHhhccCeEEEEcCChHHHH
Q 005071 309 PNTVGWEL--N-KGRKVPR----CISLAKSMDPT-RLA-ISAADLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQ 378 (715)
Q Consensus 309 ~~~~gwe~--~-~gkl~pr----~~dl~~~~dp~-~la-~~a~dlnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~ 378 (715)
.+++|.|. . +||+.|. ++|-.+.+... .+. +.-...|.||+||+.+ +..+|++|+++||+|||||||||+
T Consensus 354 GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e 433 (1008)
T TIGR01408 354 GGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCE 433 (1008)
T ss_pred chHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHH
Confidence 34556664 3 8999997 45543333211 111 1223458999999744 555699999999999999999999
Q ss_pred HHHHHHHhcC-----CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCC
Q 005071 379 VARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPV 453 (715)
Q Consensus 379 VA~~La~~GV-----g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~ 453 (715)
++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+|
T Consensus 434 ~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v------- 503 (1008)
T TIGR01408 434 MLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---GKPKSYTAADATLKINPQIKIDAHQNRV------- 503 (1008)
T ss_pred HHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---CcHHHHHHHHHHHHHCCCCEEEEEEeec-------
Confidence 9999999999 899999999999999999999999999 9999999999999999999999998765
Q ss_pred CCccccccccchhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEEc
Q 005071 454 PCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (715)
Q Consensus 454 ~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~~ 517 (715)
....+++ .++++++|+||+|+|+.++|.+++.+|+.+++|+|.+ ..|+.|++.+.-
T Consensus 504 --------~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~i 562 (1008)
T TIGR01408 504 --------GPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVV 562 (1008)
T ss_pred --------ChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEe
Confidence 0111222 5788999999999999999999999999999999987 589999987653
No 34
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.95 E-value=2.7e-27 Score=261.89 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=144.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-----CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-----g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
||+||||||+||+++++|+++|| |+|+++|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred EEecccCCCCCCCCCccccccccchhh-HHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEEcC
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRR-LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRHG 518 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~-l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~~g 518 (715)
++..++ . ..+.+. -.++++++|+|++|+|+.++|.++++.|+.+++|+|.+ ..|+.|++.+..
T Consensus 78 a~~~~v-------~-------~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~i- 142 (435)
T cd01490 78 ALQNRV-------G-------PETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVI- 142 (435)
T ss_pred EEeccc-------C-------hhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEe-
Confidence 998655 0 001111 15678999999999999999999999999999999987 589999987654
Q ss_pred CCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccc-cCcchHHHHHHHHHHHH
Q 005071 519 PGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELF 597 (715)
Q Consensus 519 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~aP~~s~~drtLdq~CtV-~~Pgv~~ias~~A~Ell 597 (715)
| ..+.||.|... .|..+ -+.||+ ..|-.-.-.-.-|.++.
T Consensus 143 --P------------------------------~~te~y~~~~~-p~~~~------~P~Ctl~~~P~~~eHcI~wA~~~F 183 (435)
T cd01490 143 --P------------------------------HLTESYSSSRD-PPEKS------IPLCTLKNFPNAIEHTIQWARDEF 183 (435)
T ss_pred --C------------------------------CCCCCccCCCC-CCCCC------CCCccccCCCCCchHHHHHHHHHH
Confidence 2 34679999821 12211 257885 35554444445555554
Q ss_pred HHHh
Q 005071 598 VGVL 601 (715)
Q Consensus 598 ~~ll 601 (715)
..+.
T Consensus 184 ~~lF 187 (435)
T cd01490 184 EGLF 187 (435)
T ss_pred HHHh
Confidence 4444
No 35
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-27 Score=244.49 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=122.9
Q ss_pred hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCc
Q 005071 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (715)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v 437 (715)
+++-+.++||||+|||||||++.++|+..|++.|++||-|+++.+|||||+||++.|+ |++||++||+.+.+..|+.
T Consensus 34 ~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 34 NLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred HHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhCCCc
Confidence 4577888999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc---C-------CeEEEee-
Q 005071 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT---N-------KITITAA- 506 (715)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~---~-------kp~I~aa- 506 (715)
.|..+..+| .+.-.++.+++|+|++..|+.++|.+||.+..+. | +|+|+++
T Consensus 111 ~v~~h~~kI------------------qd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGt 172 (422)
T KOG2015|consen 111 VVVPHRQKI------------------QDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGT 172 (422)
T ss_pred EEeeeecch------------------hcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCc
Confidence 999988766 2233578899999999999999999999765532 2 5999975
Q ss_pred eCCceEEEEE
Q 005071 507 LGFDSFLVMR 516 (715)
Q Consensus 507 lG~~g~vv~~ 516 (715)
-||.|++-+.
T Consensus 173 EG~KG~arvI 182 (422)
T KOG2015|consen 173 EGFKGHARVI 182 (422)
T ss_pred ccccceeEEE
Confidence 8999998543
No 36
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.9e-28 Score=260.28 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=129.8
Q ss_pred HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
++++++.|||||||||+||++.++|++.|+++|+|||-|+|+.||||||+||+.+|+ |++||.+|++..++.||.++
T Consensus 7 ~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn~~ 83 (603)
T KOG2013|consen 7 HEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPNIK 83 (603)
T ss_pred HHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEE
Q 005071 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMR 516 (715)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~ 516 (715)
+..|..+| .+.+...++++++|+|+.|.||+++|..+|++|.....|+|.. .-||.||+.++
T Consensus 84 l~~yhanI----------------~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~i 146 (603)
T KOG2013|consen 84 LVPYHANI----------------KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVI 146 (603)
T ss_pred eEeccccc----------------cCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEE
Confidence 99999876 2334556788999999999999999999999999999999976 58999999764
No 37
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=1.1e-26 Score=221.09 Aligned_cols=132 Identities=31% Similarity=0.361 Sum_probs=122.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
||+|+|+||+||++|++|+++|+++|+|+|+|.|+++|++||++++.+|+ |++|+++++++|+++||+++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999864
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEEEc
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~vv~~~ 517 (715)
+ +..+..++++++|+||+|+|+.++|+.++++|+++++|+|.+ ..|+.|++.+..
T Consensus 78 ~-----------------~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 I-----------------SEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 4 333447788999999999999999999999999999999997 478999987654
No 38
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=9.5e-27 Score=239.65 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=122.3
Q ss_pred CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhC
Q 005071 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (715)
Q Consensus 355 p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~in 434 (715)
++.+|++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+ |++||++++++|+++|
T Consensus 2 G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~in 78 (231)
T cd00755 2 GEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDIN 78 (231)
T ss_pred CHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHHC
Confidence 3457999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 435 P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
|+++++.+...+ +.++..+++. ++|+||+|+|+.++|..++.+|+++++|+|.+
T Consensus 79 P~~~V~~~~~~i-----------------~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 79 PECEVDAVEEFL-----------------TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CCcEEEEeeeec-----------------CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999998544 5567777774 69999999999999999999999999999986
No 39
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.94 E-value=1.5e-26 Score=242.55 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=129.3
Q ss_pred hhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 345 nlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
-.||.|+. +++..+|++|++++|+|+|+||+||++|++|+++|||+|+|+|.|.|+.+|+|||+++..+|+ |++||
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v---G~~Kv 86 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV---GLAKA 86 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc---ChHHH
Confidence 36899996 445567999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
+++++++.++||+++++.+... .+.++..+++. ++|+||+|+|+..+|..++++|+++++|+
T Consensus 87 e~~~~rl~~INP~~~V~~i~~~-----------------i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~ 149 (268)
T PRK15116 87 EVMAERIRQINPECRVTVVDDF-----------------ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPL 149 (268)
T ss_pred HHHHHHHHhHCCCcEEEEEecc-----------------cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999998643 35667777774 79999999999999999999999999999
Q ss_pred EEe
Q 005071 503 ITA 505 (715)
Q Consensus 503 I~a 505 (715)
|.+
T Consensus 150 I~~ 152 (268)
T PRK15116 150 VTT 152 (268)
T ss_pred EEE
Confidence 976
No 40
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=236.33 Aligned_cols=262 Identities=21% Similarity=0.322 Sum_probs=202.9
Q ss_pred hhhhhhhhhhhhhhhhcCCchh----HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCc
Q 005071 337 LAISAADLNLKLMRWRQLPSLN----LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL 412 (715)
Q Consensus 337 la~~a~dlnlry~R~rllp~~g----q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~ 412 (715)
+..+.+|-| .|+|-+.+-.+| -+||+...|+|||.||+||-+|..|.|+|+|++.|.|+|+|++.|+||- +|.+
T Consensus 52 lSsEVVDSN-PYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P 129 (422)
T KOG2336|consen 52 LSSEVVDSN-PYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQP 129 (422)
T ss_pred hhhhHhcCC-hHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCc
Confidence 445567765 688876555444 4899999999999999999999999999999999999999999999995 5788
Q ss_pred chhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhh-----------ccCCEEEEe
Q 005071 413 DDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-----------LSHDVIFLL 481 (715)
Q Consensus 413 ~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li-----------~~~DvV~~~ 481 (715)
+.. |..|+++|.+.|..|||+|.++.+..+| .+.++.+.+. +..|+|+.|
T Consensus 130 ~Qa---GlsKv~AA~~TL~~iNPDV~iE~hn~NI----------------TTvenFd~F~~~is~g~~~~gkpvDLVLSC 190 (422)
T KOG2336|consen 130 DQA---GLSKVDAAVQTLAEINPDVVIEVHNYNI----------------TTVENFDTFTDRISNGSLCPGKPVDLVLSC 190 (422)
T ss_pred ccc---cchHHHHHHHHHHhcCCCeEEEEeecce----------------eeehhHHHHHHHhhcCCCCCCCcceEEeee
Confidence 989 9999999999999999999999999877 2334444433 248999999
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEee---eCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCcee
Q 005071 482 TDTRESRWLPTLLCANTNKITITAA---LGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYF 558 (715)
Q Consensus 482 tDs~esR~li~~~~~~~~kp~I~aa---lG~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~ 558 (715)
.||+|+|..+|.+|...+..|+..+ -...|++.... ++.++||.
T Consensus 191 VDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~---------------------------------PGetACFA 237 (422)
T KOG2336|consen 191 VDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIV---------------------------------PGETACFA 237 (422)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEec---------------------------------CCccceec
Confidence 9999999999999999999888543 34556665432 35789999
Q ss_pred ecccCCCCCCCccccc--cccccccCc-chHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCceeEEEec
Q 005071 559 CNDVVAPTDSTANRTL--DQQCTVTRP-GLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRG 635 (715)
Q Consensus 559 C~d~~aP~~s~~drtL--dq~CtV~~P-gv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~p~~irg 635 (715)
|..+..-......||| +..|+..-| ..+++|+.+.+..||.|| .+|.. ...|| ++.
T Consensus 238 CaPPlVVAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LL----NFGeV------------S~YlG-----YNa 296 (422)
T KOG2336|consen 238 CAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLL----NFGEV------------SPYLG-----YNA 296 (422)
T ss_pred ccCceeeecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHh----hcccc------------chhhc-----chh
Confidence 9843322344556787 468997655 588999999999999999 56642 23455 445
Q ss_pred CCCCeeeEEecCCCCCCCCCCChhHHHHHHHhCHHHHHHHhcCCch
Q 005071 636 SLSQFSQMTLVGHSSNSCTACCSTVVSEYRKRGMEFILQAINHPTY 681 (715)
Q Consensus 636 ~~~~f~~~~l~~~~~~~C~aCs~~v~~~y~~~g~~f~~~~~~~~~~ 681 (715)
+..-|.++.+. .+|+|.- . .+.++.-+|.+++-+.|+.
T Consensus 297 l~DFFP~msmk--PNPqCdd---~---~Cl~rQkEy~~kvaa~pk~ 334 (422)
T KOG2336|consen 297 LSDFFPTMSMK--PNPQCDD---R---NCLERQKEYMLKVAAKPKM 334 (422)
T ss_pred HHhhCccccCC--CCCCCCc---H---HHHHHHHHHHHHHhcCCch
Confidence 55678899888 7888753 1 2223444777788888864
No 41
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.93 E-value=1.5e-25 Score=248.56 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=140.2
Q ss_pred hhhhhh-hcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHH
Q 005071 346 LKLMRW-RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (715)
Q Consensus 346 lry~R~-rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAe 424 (715)
.||+|| |+++..||++|.+++|+|||+||+||+++++|++.|||+|||||+|.|+.+|++||++++.+|+ |++||+
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~ 77 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE 77 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence 389999 4767778999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005071 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (715)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~ 504 (715)
+++++|+++||+|+++.+..++ ..-.++..++++++|+||.+.++...+..++.+|+++++|+|.
T Consensus 78 ~~~~~L~eLNp~V~i~~~~e~~---------------~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~ 142 (425)
T cd01493 78 ATCELLQELNPDVNGSAVEESP---------------EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLY 142 (425)
T ss_pred HHHHHHHHHCCCCEEEEEeccc---------------chhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999987543 1112344678999999999999999999999999999999998
Q ss_pred e-eeCCceEEEEEcC
Q 005071 505 A-ALGFDSFLVMRHG 518 (715)
Q Consensus 505 a-alG~~g~vv~~~g 518 (715)
+ ..|+.|++.+..+
T Consensus 143 ~~s~G~~G~v~v~~~ 157 (425)
T cd01493 143 VRSYGLYGYIRIQLK 157 (425)
T ss_pred EecccCEEEEEEEEC
Confidence 7 6999999987764
No 42
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.92 E-value=9.1e-25 Score=262.94 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=136.9
Q ss_pred hhhhhhhcC-CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHH
Q 005071 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (715)
Q Consensus 346 lry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAe 424 (715)
.+|+||+.+ +..+|++|++++|||+||||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|+ |++||+
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~Kae 81 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNRAE 81 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchHHH
Confidence 579999755 4456999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcC--CeE
Q 005071 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN--KIT 502 (715)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~--kp~ 502 (715)
+++++|+++||.|+|+.+...+ + .++++++|+||+|.|+.+.|..+|++|++++ +|+
T Consensus 82 a~~~~L~eLNp~V~V~~~~~~l-----------------~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~f 140 (1008)
T TIGR01408 82 AVVKKLAELNPYVHVSSSSVPF-----------------N----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAF 140 (1008)
T ss_pred HHHHHHHHHCCCceEEEecccC-----------------C----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999987433 2 3588999999999999999999999999999 899
Q ss_pred EEe-eeCCceEEEEEcC
Q 005071 503 ITA-ALGFDSFLVMRHG 518 (715)
Q Consensus 503 I~a-alG~~g~vv~~~g 518 (715)
|.+ ..|+.|+++...|
T Consensus 141 I~~~~~G~~G~vf~D~g 157 (1008)
T TIGR01408 141 ISADVRGLFGSLFCDFG 157 (1008)
T ss_pred EEEeecceEEEEEecCC
Confidence 987 6899999987654
No 43
>PRK06153 hypothetical protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=237.29 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=116.0
Q ss_pred HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCC-CCCcchhcCCCC--cHHHHHHHHHHhhCC
Q 005071 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS-LYTLDDCLNGGD--FKAMAAVKSLERIFP 435 (715)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~-L~~~~Di~~~G~--~KAeaaa~~L~~inP 435 (715)
|++|+++||+||||||+||+++.+|+++|||+|+|||.|.|+.+||+||+ +|+.+|+ |+ +||+++++++.+++|
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999998 6789999 88 999999999999998
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCC
Q 005071 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (715)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~ 509 (715)
.+ +.+... .+.+++. .+.++|+||+|+|+.++|.+++++|.++++|+|++++|.
T Consensus 248 ~I--~~~~~~-----------------I~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l 301 (393)
T PRK06153 248 GI--VPHPEY-----------------IDEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGL 301 (393)
T ss_pred eE--EEEeec-----------------CCHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecc
Confidence 54 455432 3555654 568999999999999999999999999999999998764
No 44
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.92 E-value=6.5e-25 Score=223.06 Aligned_cols=141 Identities=20% Similarity=0.233 Sum_probs=129.8
Q ss_pred hhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 345 nlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
+.||.|-. ++++-++++|++++|+|+|+||+||.++..|+|.|||+|+|||.|.|+.+|+|||+-....++ |++|+
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---Gk~Kv 86 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---GKPKV 86 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---ccHHH
Confidence 45666664 456667899999999999999999999999999999999999999999999999999888999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~li~~~~~~~~kp~ 502 (715)
++++++++.|||.++|.++..- .+.+++++++. ++|+||||.|+..++.-+-.+|+.+++|+
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f-----------------~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~v 149 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDF-----------------ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPV 149 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhh-----------------hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999864 48899999876 59999999999999999999999999999
Q ss_pred EEe
Q 005071 503 ITA 505 (715)
Q Consensus 503 I~a 505 (715)
|+.
T Consensus 150 Iss 152 (263)
T COG1179 150 ISS 152 (263)
T ss_pred Eee
Confidence 975
No 45
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.91 E-value=6.6e-24 Score=219.80 Aligned_cols=190 Identities=16% Similarity=0.148 Sum_probs=142.5
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcC-----C-----eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHH
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-----R-----KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLE 431 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GV-----g-----~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~ 431 (715)
-+..||+||||||+||+++++|+++|+ | +|+++|+|+|+.|||+|| +|..+|+ |++||++++++++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~ 84 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLN 84 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHH
Confidence 368899999999999999999999973 4 999999999999999999 6788999 9999999999999
Q ss_pred hhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh---cCCeEEEee-e
Q 005071 432 RIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN---TNKITITAA-L 507 (715)
Q Consensus 432 ~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~---~~kp~I~aa-l 507 (715)
+++ +++++++...+ +. .+++.++|+||+|+||.++|..++..|.+ .++|+|+++ -
T Consensus 85 ~~~-~~~i~a~~~~~-----------------~~---~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~ 143 (244)
T TIGR03736 85 QAM-GTDWTAHPERV-----------------ER---SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNR 143 (244)
T ss_pred hcc-CceEEEEEeee-----------------Cc---hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCC
Confidence 998 89999988654 22 22356899999999999999999999988 358999886 5
Q ss_pred CCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccC-C-CCCCCcccccccccc---cc-
Q 005071 508 GFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVV-A-PTDSTANRTLDQQCT---VT- 581 (715)
Q Consensus 508 G~~g~vv~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d~~-a-P~~s~~drtLdq~Ct---V~- 581 (715)
+..|++++-.-..- ..+.. ..+-+..+-||-|.--. . |.++. +.|| +.
T Consensus 144 ~~~gqv~~g~i~~~--~k~~~------------------~~~lP~vte~y~~~~d~~~~~~~~~------PsCsla~al~ 197 (244)
T TIGR03736 144 ADDGQVILGQVPSR--AKGEN------------------RLRLPHVGELFPELIDPSVDPDDDR------PSCSLAEALA 197 (244)
T ss_pred CCCCcEEEEecccc--cccCC------------------ceecCCchhhCcccccCccCCCCCC------CCchHHHHhc
Confidence 77888876431000 00000 00113456677775211 1 22222 4787 23
Q ss_pred --CcchHHHHHHHHHHHHHHHhc
Q 005071 582 --RPGLAPIASALAVELFVGVLH 602 (715)
Q Consensus 582 --~Pgv~~ias~~A~Ell~~ll~ 602 (715)
+=.+..+++.+|..+|.-|+.
T Consensus 198 ~Q~l~iN~~~a~~~~~~L~~lf~ 220 (244)
T TIGR03736 198 KQSLFINQAIAVFAMNLLWKLFR 220 (244)
T ss_pred CchhHHHHHHHHHHHHHHHHHHh
Confidence 335777888888888888883
No 46
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.4e-23 Score=234.74 Aligned_cols=189 Identities=22% Similarity=0.304 Sum_probs=156.0
Q ss_pred ccccEEe--c-CCcccce----EecccCCCChhh----hhhhhhhhhhhhhhhhcCCchh-HHhhccCeEEEEcCChHHH
Q 005071 310 NTVGWEL--N-KGRKVPR----CISLAKSMDPTR----LAISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGC 377 (715)
Q Consensus 310 ~~~gwe~--~-~gkl~pr----~~dl~~~~dp~~----la~~a~dlnlry~R~rllp~~g-q~kL~~~kVlIvGaGgLGs 377 (715)
+++++|- . .||+.|. ++|--+++ |.+ -.+.-...+.||+-|+.+-+.+ |+||.+.|+.+||||++||
T Consensus 365 G~vaQEvlKa~sgKF~PL~Q~lYfDale~L-P~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGC 443 (1013)
T KOG2012|consen 365 GIVAQEVLKACSGKFTPLKQWLYFDALESL-PSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGC 443 (1013)
T ss_pred hhhHHHHHHhhccCccchhHheehhhHhhC-CCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhH
Confidence 4556663 2 8999997 46644443 211 1233345688999998773333 8999999999999999999
Q ss_pred HHHHHHHHhcC-----CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCC
Q 005071 378 QVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHP 452 (715)
Q Consensus 378 ~VA~~La~~GV-----g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~ 452 (715)
+..++++.+|| |+|++.|.|.||.||||||+||+..|+ |++|+++||++...+||+++|+++..++ | |
T Consensus 444 E~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rv---g-p 516 (1013)
T KOG2012|consen 444 ELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRV---G-P 516 (1013)
T ss_pred HHHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc---CchHHHHHHHHHHhcCCCceeeehhhcc---C-c
Confidence 99999999999 589999999999999999999999999 9999999999999999999999999766 1 1
Q ss_pred CCCccccccccchhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe-eeCCceE--EEEEc
Q 005071 453 VPCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSF--LVMRH 517 (715)
Q Consensus 453 ~~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a-alG~~g~--vv~~~ 517 (715)
+.+.+ ++++..-|+|..+.||.++|.+++.-|..+.||++.+ .+|..|. +++-|
T Consensus 517 -----------eTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPh 575 (1013)
T KOG2012|consen 517 -----------ETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPH 575 (1013)
T ss_pred -----------ccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecc
Confidence 22222 6788999999999999999999999999999999976 6999875 55555
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.85 E-value=3.8e-21 Score=197.45 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=90.6
Q ss_pred hhhhhhhhcC-CchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 345 NLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 345 nlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
..||+||+.+ +..+|+||++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++|+. |+ |++||
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---Gk~KA 81 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---GGTRG 81 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---CCcHH
Confidence 4799999744 5556999999999999999999999999999999999999999999999999999996 67 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeccc
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAI 446 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~I 446 (715)
++++++|+++||+|+|+.+...+
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred HHHHHHHHHHCCCcEEEEccccc
Confidence 99999999999999999987543
No 48
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.2e-20 Score=193.35 Aligned_cols=133 Identities=26% Similarity=0.322 Sum_probs=122.8
Q ss_pred cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHh
Q 005071 353 QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER 432 (715)
Q Consensus 353 llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~ 432 (715)
.+++.|++||+++-|+||||||+||.|+..|+|.||++|.+||+|.|++|.||||...+..|+ |.||+.++++.+++
T Consensus 63 FfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~clkkh~sk 139 (430)
T KOG2018|consen 63 FFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVMCLKKHFSK 139 (430)
T ss_pred hhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHHHHHHHHHh
Confidence 567778999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhh-ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 433 inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li-~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
|.|+++|++.++-. +.++.++++ .+-|+|+||.||.+++.-+-.+|..+++++|.+
T Consensus 140 iaPw~eIdar~~l~-----------------~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 140 IAPWCEIDARNMLW-----------------TSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred hCccceecHHHhhc-----------------CCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence 99999999988633 555566665 468999999999999999999999999999975
No 49
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.7e-19 Score=183.34 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=140.2
Q ss_pred hhhhhhhhhhcCCchh-HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc
Q 005071 343 DLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (715)
Q Consensus 343 dlnlry~R~rllp~~g-q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (715)
+.+.-|+||+-+++++ |++|+++||||+|++|+|.++|++|+.+|||++|++|.-.|....++-|+|+..+++ |+.
T Consensus 9 ~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~v---g~~ 85 (331)
T KOG2014|consen 9 QEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSV---GQT 85 (331)
T ss_pred HHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhh---chH
Confidence 3445599998777776 999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 422 KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
||++..++|+.+||.|++.....++ .+.-++++.++|+|+-.--+++.+--+|.+|++++++
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl------------------~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~ 147 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDL------------------SEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIA 147 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhh------------------hhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCce
Confidence 9999999999999999999987654 2233789999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEEcC
Q 005071 502 TITA-ALGFDSFLVMRHG 518 (715)
Q Consensus 502 ~I~a-alG~~g~vv~~~g 518 (715)
++.+ ..|+.||.+...+
T Consensus 148 F~a~d~~g~~Gy~F~dL~ 165 (331)
T KOG2014|consen 148 FYAGDCFGLCGYAFADLQ 165 (331)
T ss_pred EEeccccceeeeeeeehh
Confidence 9987 5899999876654
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.69 E-value=6.6e-16 Score=175.30 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=129.4
Q ss_pred HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
-++.+++||+|+|+|++|+.++..|++.|+++|+.||.|.+ .+|++| | |+. ++.|++ .+|+++
T Consensus 124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------I---gEl-~e~A~~----~n~~v~ 186 (637)
T TIGR03693 124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------I---HEL-AEIAEE----TDDALL 186 (637)
T ss_pred hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------H---HHH-HHHHHH----hCCCCc
Confidence 46779999999999999999999999999999999999999 999999 6 776 666666 899999
Q ss_pred EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC--ChHHHHHHHHHHHhcCCeEEEe-eeCCceEEEE
Q 005071 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD--TRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (715)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD--s~esR~li~~~~~~~~kp~I~a-alG~~g~vv~ 515 (715)
++.+.. ...+.+.+.++.+|+|+..+| ..+.-.++|..|++.|+|+|=+ ..|..+.+-.
T Consensus 187 v~~i~~------------------~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGP 248 (637)
T TIGR03693 187 VQEIDF------------------AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGP 248 (637)
T ss_pred eEeccC------------------CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecc
Confidence 999863 246788899999999999999 4444456999999999777754 3444443321
Q ss_pred EcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecc-cCC--CCCCCccccccccccccCcc-hHHHHHH
Q 005071 516 RHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCND-VVA--PTDSTANRTLDQQCTVTRPG-LAPIASA 591 (715)
Q Consensus 516 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gCy~C~d-~~a--P~~s~~drtLdq~CtV~~Pg-v~~ias~ 591 (715)
.. .+++.||+.|.- ... .-+. .+ .. ..++|. ++|+|.+
T Consensus 249 lf--------------------------------tPgkTGCWeCa~~RL~e~~L~~--~~---~s-~a~sPat~AmlAnv 290 (637)
T TIGR03693 249 VF--------------------------------QQHGDECFEAAWHRLHESALHE--EN---SL-AAFPLAGKAMLANI 290 (637)
T ss_pred eE--------------------------------CCCCCcHHHHHHHHHHHHhcCC--CC---cc-cccCHHHHHHHHHH
Confidence 11 125789999942 110 0000 01 11 345565 8899999
Q ss_pred HHHHHHHHHh
Q 005071 592 LAVELFVGVL 601 (715)
Q Consensus 592 ~A~Ell~~ll 601 (715)
++.|++|.++
T Consensus 291 iv~ElfK~IT 300 (637)
T TIGR03693 291 IVFELFKAAA 300 (637)
T ss_pred HHHHHHHHHh
Confidence 9999999999
No 51
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.2e-17 Score=184.62 Aligned_cols=153 Identities=22% Similarity=0.235 Sum_probs=138.3
Q ss_pred hhhhhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCC
Q 005071 342 ADLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (715)
Q Consensus 342 ~dlnlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~ 420 (715)
.|.+ -|+||+ .++..-++|+.+++|||.|+||||-+||+||+.+||+++||.|...+..++|.-|++++++|| |+
T Consensus 15 IDE~-LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk 90 (1013)
T KOG2012|consen 15 IDES-LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK 90 (1013)
T ss_pred hhhh-hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence 4543 399998 445555899999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCC
Q 005071 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNK 500 (715)
Q Consensus 421 ~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~k 500 (715)
++|++..++|+++|++|.|..+... ..+++++++++|+.+--+.+...-++++|+++++
T Consensus 91 nRA~as~~~LaeLN~yV~V~v~t~~---------------------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i 149 (1013)
T KOG2012|consen 91 NRAEASVEKLAELNNYVPVVVLTGP---------------------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGI 149 (1013)
T ss_pred chHHHHHHHHHHhhcceeeEEecCc---------------------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCe
Confidence 9999999999999999999998632 2267889999999999999999999999999999
Q ss_pred eEEEe-eeCCceEEEEEcCC
Q 005071 501 ITITA-ALGFDSFLVMRHGP 519 (715)
Q Consensus 501 p~I~a-alG~~g~vv~~~g~ 519 (715)
-+|.+ .-|..|++++..|.
T Consensus 150 ~fi~ad~RGLfg~lFCDFG~ 169 (1013)
T KOG2012|consen 150 AFIAADTRGLFGQLFCDFGE 169 (1013)
T ss_pred EEEEeccchhhhhhhccCCC
Confidence 99988 68999999888874
No 52
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5e-16 Score=168.34 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=136.2
Q ss_pred hhhhhhhh-cCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHH
Q 005071 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (715)
Q Consensus 345 nlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KA 423 (715)
-.||+||. ++++.||..|..++|.++|||.+||+++++|+..|||.||+||...|+.+++..+++...+++ |++||
T Consensus 7 ~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---GksrA 83 (523)
T KOG2016|consen 7 KTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKSRA 83 (523)
T ss_pred hhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chhHH
Confidence 36899995 888999999999999999999999999999999999999999999999999999998888888 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
++..+.|+++||+|.-+.+... ...-..+...++.++++|+..-=+.++-..+.++|+.+++|++
T Consensus 84 ~a~~e~LqeLN~~V~~~~vee~---------------p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll 148 (523)
T KOG2016|consen 84 EATLEFLQELNPSVSGSFVEES---------------PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLL 148 (523)
T ss_pred HHHHHHHHHhChhhhcCccccC---------------hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceE
Confidence 9999999999999998776532 1223445567889999999888887788889999999999999
Q ss_pred Ee-eeCCceEEEE
Q 005071 504 TA-ALGFDSFLVM 515 (715)
Q Consensus 504 ~a-alG~~g~vv~ 515 (715)
+. .+|+.|++.+
T Consensus 149 ~~rs~Gl~G~iRI 161 (523)
T KOG2016|consen 149 LTRSYGLAGTIRI 161 (523)
T ss_pred EEeeecceEEEEE
Confidence 98 7999999854
No 53
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.22 E-value=8.3e-12 Score=109.64 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=53.2
Q ss_pred CcCceeecccCCCCCCCcccccccccc---ccCcchHHHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCce
Q 005071 553 RLGCYFCNDVVAPTDSTANRTLDQQCT---VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGIL 629 (715)
Q Consensus 553 ~~gCy~C~d~~aP~~s~~drtLdq~Ct---V~~Pgv~~ias~~A~Ell~~ll~hp~g~~a~~~~~~~~~~~~~~~~Lg~~ 629 (715)
+++||+|+ +|.. .. ..+.|. |++|.+++||++||.|+||.|+ |.+. ++.++
T Consensus 2 ~~pC~rCl---~p~~-~~---~~~~C~~~GVlg~~~giigslqA~eaik~l~----g~~~---------------~l~~~ 55 (84)
T PF05237_consen 2 KTPCYRCL---FPEP-PE---SAPTCAEAGVLGPVVGIIGSLQANEAIKLLL----GIGE---------------PLSGK 55 (84)
T ss_dssp T---HHHH---HTTS-S-----TTSSSTS-B-HHHHHHHHHHHHHHHHHHHC----T-S------------------BTE
T ss_pred CCceehhc---CCCC-Cc---cCCCccccccccchHHHHHHHHHHHHHHHHH----hcCC---------------chhhh
Confidence 57899999 4544 11 124665 9999999999999999999999 6543 56789
Q ss_pred eEEEecCCCCeeeEEecCCCCCCCCCCChh
Q 005071 630 PHQIRGSLSQFSQMTLVGHSSNSCTACCST 659 (715)
Q Consensus 630 p~~irg~~~~f~~~~l~~~~~~~C~aCs~~ 659 (715)
++.||++.++|+++.+. ++++|++|+..
T Consensus 56 l~~~D~~~~~~~~i~~~--k~~~C~~C~~~ 83 (84)
T PF05237_consen 56 LLTIDLLNMSFRSIRIK--KNPDCPVCGPK 83 (84)
T ss_dssp EEEEETTTTEEEEEE------TT-TTT---
T ss_pred eeeEECCCCeEEEEecC--CCccCcCcCcC
Confidence 99999999999999998 99999999974
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.09 E-value=1.3e-05 Score=76.26 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=63.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..+++++|+|+|+||.|..++.+|...|+++|+++.. -..|++.+++.+ +...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~ 61 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNI 61 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Ccccc
Confidence 3689999999999999999999999999999999874 233677777666 55556
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHH
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~es 487 (715)
+... .+.+.+.+.++|+||.||-....
T Consensus 62 ~~~~---------------------~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 62 EAIP---------------------LEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEE---------------------GGGHCHHHHTESEEEE-SSTTST
T ss_pred ceee---------------------HHHHHHHHhhCCeEEEecCCCCc
Confidence 5554 23455778899999999987654
No 55
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.08 E-value=1.8e-05 Score=87.83 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=72.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.+|+|+|||++|+.||..|++-|.++|+++|.. +.|+..+++.. -+ ++++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~i~~~~---~~--~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCARIAELI---GG--KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHHhhc---cc--cceeEEe
Confidence 589999999999999999999999999998872 12222222221 12 5555554
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEee
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aa 506 (715)
++ .+.+.+.++|+++|+||+|....-.+ -+-++|.+.|+++++.+
T Consensus 55 D~----------------~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 55 DA----------------ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred cc----------------cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 43 46778889999999999999877766 45667888888877653
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.96 E-value=2.8e-05 Score=83.14 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=61.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
++.++|+|+|+||.|..++..|+..|+++|+++|.+ ..|++.+++.+.+.++.+.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------------------~~ka~~la~~l~~~~~~~~~~~ 182 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------------------PARAAALADELNARFPAARATA 182 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHHHhhCCCeEEEe
Confidence 467899999999999999999999999999999874 2488899999988777654422
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (715)
. +++.+.+.++|+||+||-
T Consensus 183 ~-----------------------~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 183 G-----------------------SDLAAALAAADGLVHATP 201 (284)
T ss_pred c-----------------------cchHhhhCCCCEEEECCc
Confidence 1 223345678999999974
No 57
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.59 E-value=0.00029 Score=69.05 Aligned_cols=117 Identities=25% Similarity=0.257 Sum_probs=93.0
Q ss_pred cCeEEEEcCChHHHHHHHHHH---HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLM---AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La---~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.-.|.++|||-||--+|..|+ |-|..+|..+|+.+|+..++.---+ -..+ |.+|++-+ ++|.+..+.-.++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~---GEyKv~Fi-~rl~~~~f~r~V~ 91 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKV---GEYKVDFI-KRLGRVHFGRRVE 91 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCc---chhHHHHH-HHhCcCCCCceee
Confidence 447999999999999999998 5689999999999999998764333 2345 99999875 4677888899999
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC---CChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT---DTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t---Ds~esR~li~~~~~~~~kp~I~a 505 (715)
+++..| +.+|+..+.. |||+-|. |+...-..+-.+|++.|+.-|+.
T Consensus 92 a~pE~i-----------------t~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 92 AFPENI-----------------TKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccccc-----------------cccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 988654 6677766543 8777664 67777777888999999988863
No 58
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.56 E-value=0.00033 Score=77.44 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=68.3
Q ss_pred EEEEcCChHHHHHHHHHHHhcCC-eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 367 CLLLGAGTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg-~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
|+|+|+|.+|..+++.|++.+-- ++++.|. ...|++.+++.+ ...+++....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence 79999999999999999999854 9999887 233555555444 23345555543
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
+ .+.+.+.++++++|+||+|.-.. .-.-+-++|.+.|+.+|+.
T Consensus 55 ~----------------~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 55 V----------------NDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp T----------------TTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred c----------------CCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 3 35677899999999999999877 5556888999999999984
No 59
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.54 E-value=0.00043 Score=74.21 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=60.4
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+++++|+|+|+||+|..++..|+..|+.+|++++.+. + ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~-----~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D-----FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h-----HHHHHHHHHHHHhhcCCCceeEE
Confidence 5678999999999999999999999999999988621 0 12367777777766666555443
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (715)
... .+.+.+.+.++.+|+||++|=
T Consensus 185 ~d~------------------~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 YDL------------------NDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred ech------------------hhhhHHHhhhccCCEEEEeCC
Confidence 321 123344556677888888773
No 60
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.41 E-value=0.00061 Score=73.01 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=43.4
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~ 436 (715)
+++++|+|+|+||.|..++..|+..|+.+|+++|.+ ..|++.+++.+.+.++.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------------------~~ka~~La~~~~~~~~~ 177 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------------------TSRAQALADVINNAVGR 177 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------------------HHHHHHHHHHHhhccCc
Confidence 446899999999999999999999999999998752 23788888877654443
No 61
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.26 E-value=0.00083 Score=71.81 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=55.6
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+++++|+|+|+||.|..++..|+..|+++|++++.+ ..|++.+++.+.... .+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------------------~~ka~~La~~~~~~~---~~~~ 177 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------------------PDKLSRLVDLGVQVG---VITR 177 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------------------HHHHHHHHHHhhhcC---ccee
Confidence 567899999999999999999999999999998652 237777777664321 1111
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (715)
+. ..+.+...+.++|+||.||=.
T Consensus 178 ~~--------------------~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 178 LE--------------------GDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cc--------------------chhhhhhcccCCCEEEECCCC
Confidence 11 112334456789999999854
No 62
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.25 E-value=0.0011 Score=71.24 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=43.7
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~in 434 (715)
+++++|+|+|+||.+..++..|+..|+++|++++.+. + ...|++.+++.+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~-----~~~ka~~la~~~~~~~ 175 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E-----FFDKALAFAQRVNENT 175 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c-----HHHHHHHHHHHhhhcc
Confidence 5678999999999999999999999999999988521 0 2458888888776543
No 63
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.18 E-value=0.0022 Score=65.39 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=63.4
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|+|||+|.+|...++.|...| .+|++|+.+. . ..+ ..++ +.-.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------~~l--------~~l~-------~~~~i~ 57 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------ENL--------VKLV-------EEGKIR 57 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------HHH--------HHHH-------hCCCEE
Confidence 478999999999999999999999999 7999996521 0 111 1111 111122
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.....+ . ...+.++|+||.||++.+.-..+...| +.++++-.+
T Consensus 58 ~~~~~~-----------------~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~~ 100 (202)
T PRK06718 58 WKQKEF-----------------E----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNVI 100 (202)
T ss_pred EEecCC-----------------C----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEEC
Confidence 222110 1 234678999999999999888888888 456654333
No 64
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.15 E-value=0.00086 Score=60.95 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=63.4
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|+|||.|.+|..-++.|...| .+++++..+. +.+ | ..++.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~--------------~~~------~------------~~i~~- 49 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI--------------EFS------E------------GLIQL- 49 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE--------------HHH------H------------TSCEE-
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch--------------hhh------h------------hHHHH-
Confidence 478999999999999999999999999 7999998865 111 0 11221
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
... .. ++.++++|+||.++|+.+....+-..|+++++|+-.+
T Consensus 50 -~~~-------------------~~---~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 50 -IRR-------------------EF---EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp -EES-------------------S----GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred -Hhh-------------------hH---HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 111 11 2336889999999999999889999999999987654
No 65
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0016 Score=69.80 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=46.5
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~ 436 (715)
+++++|+|+|+||.+-.|+..|+..|+.+|+++.. -..|++.+++.+.+.++.
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~~ 176 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGAA 176 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhcccc
Confidence 36899999999999999999999999999999765 456889999998888763
No 66
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.96 E-value=0.0021 Score=72.06 Aligned_cols=76 Identities=33% Similarity=0.390 Sum_probs=62.6
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|||||+|-.|.-+|++|.+.|+++|+++ || -.-||+.+|+.+. .+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NR------------T~erA~~La~~~~-------~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NR------------TLERAEELAKKLG-------AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cC------------CHHHHHHHHHHhC-------Ce
Confidence 4889999999999999999999999999999995 44 2347888787776 22
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
. ...+++.+.+.++|+||.+|-+..
T Consensus 226 ~---------------------~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 226 A---------------------VALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred e---------------------ecHHHHHHhhhhCCEEEEecCCCc
Confidence 2 245678889999999999998866
No 67
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.93 E-value=0.0059 Score=66.15 Aligned_cols=84 Identities=27% Similarity=0.325 Sum_probs=60.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+.+.+|+|+|+|.+|..++++|...|+.+|+++|.+ ..|+..+++.+. . ..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------------------~~ra~~la~~~g----~---~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------------------YERAEELAKELG----G---NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------------------HHHHHHHHHHcC----C---eE
Confidence 679999999999999999999999999999998762 235555554432 1 11
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHH
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC 495 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~ 495 (715)
. ..+.+.+.+.++|+||.||-+.+.+-.+..+.
T Consensus 227 ~---------------------~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 227 V---------------------PLDELLELLNEADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred E---------------------eHHHHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence 1 12345667788999999999887744344433
No 68
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.89 E-value=0.003 Score=67.24 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.4
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|+|+||.|..++..|+..|+.+|++++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367889999999999999999999999999999876
No 69
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.87 E-value=0.0028 Score=71.43 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=57.9
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.+.++||+|+|+|+.|..++.+|+..|+.+|+++... ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------------------~~ra~~La~~~~----~~~-- 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------------------IEKAQKITSAFR----NAS-- 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHhc----CCe--
Confidence 4678999999999999999999999999999996541 125555555432 111
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
.+ ..+.+.+.+.++|+||.||-+..
T Consensus 230 ~~---------------------~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 230 AH---------------------YLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred Ee---------------------cHHHHHHHhccCCEEEECcCCCC
Confidence 11 23566778899999999998755
No 70
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.78 E-value=0.0088 Score=61.22 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=68.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
|++++|+|||.|.+|..-++.|+..| .++|+|+.+.- .++ . .|.+. -+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVvsp~~~-------------~~l--------~----~l~~~---~~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG-AQLRVIAEELE-------------SEL--------T----LLAEQ---GGITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC-CEEEEEcCCCC-------------HHH--------H----HHHHc---CCEEE
Confidence 78899999999999999999999999 58999987421 111 1 11111 13444
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
+...+ . ...++++|+||.+||+.+....+-..|++.++|+-.+
T Consensus 58 ~~~~~-----------------~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 58 LARCF-----------------D----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EeCCC-----------------C----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 43211 1 2346889999999999988888889999999988444
No 71
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.76 E-value=0.007 Score=68.24 Aligned_cols=36 Identities=42% Similarity=0.640 Sum_probs=33.5
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+++|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 377899999999999999999999999999999876
No 72
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.75 E-value=0.00056 Score=69.35 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=48.9
Q ss_pred hHHhhccCeEEEEcCChHHHH-HHHHHHHhcCCeE------EEE---eCCcccccCCCcCCC
Q 005071 358 NLDILSSRKCLLLGAGTLGCQ-VARMLMAWGVRKI------TLL---DNGRVAMSNPLRQSL 409 (715)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~-VA~~La~~GVg~I------tLV---D~D~Ve~sNl~RQ~L 409 (715)
-++++++++|.|+|.|+.|+. ++..|+.+||+.+ ++| |++..+++|+|||.+
T Consensus 99 a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 99 ALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 378999999999999999999 9999999999999 999 999999999999876
No 73
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.65 E-value=0.011 Score=59.11 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=60.0
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
.+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.+ .+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 999999999999998 589988652 225566666665332 3344
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
.... ..+.+++.+.++++|+||.+|-...
T Consensus 81 ~~~~------------------~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 81 GAVE------------------TSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred EEee------------------CCCHHHHHHHHhcCCEEEECCCCCc
Confidence 3332 1245666778899999999986544
No 74
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.65 E-value=0.017 Score=50.96 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=59.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC--CeEEEE-eCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV--RKITLL-DNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV--g~ItLV-D~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
||.|||+|.+|..+++.|++.|+ .+|.++ +. ...|++.++ +.++ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~----~~~~-~~~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELA----KEYG-VQATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHH----HHCT-TEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHH----Hhhc-ccccc-
Confidence 68999999999999999999994 344433 32 122333333 3333 22211
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHH-HHhcCCeEEEee
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL-CANTNKITITAA 506 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~-~~~~~kp~I~aa 506 (715)
.+..+.++.+|+||.|+......-++..+ ....++.+|+.+
T Consensus 53 -----------------------~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 53 -----------------------DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp -----------------------EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred -----------------------CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 12356678999999999988877777776 556788888864
No 75
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.55 E-value=0.017 Score=56.71 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|+|||.|.+|...++.|...| .++++|+.+.. +++ .++ +.+.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~g-a~V~VIsp~~~-------------~~l---------------~~l-~~i~~- 58 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTG-AFVTVVSPEIC-------------KEM---------------KEL-PYITW- 58 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCccC-------------HHH---------------Hhc-cCcEE-
Confidence 588999999999999999999999999 48889865421 111 010 11221
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~ 498 (715)
.... .. +.-++++|+||.+||+.+.-..+...|+++
T Consensus 59 -~~~~-----------------~~----~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 59 -KQKT-----------------FS----NDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred -Eecc-----------------cC----hhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 1111 11 123578999999999999998898888774
No 76
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.52 E-value=0.0087 Score=57.13 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=31.7
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|+|+|++|..+++.|+..|..+++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778999875
No 77
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.0098 Score=68.62 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=88.9
Q ss_pred cccceEecccCCCChhhhhhhhhhhhhhhhhhhcCCchh--HHhhccCeEEEEcCC-hHHHHHHHHHHHhcCCeEEEEeC
Q 005071 320 RKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLN--LDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 320 kl~pr~~dl~~~~dp~~la~~a~dlnlry~R~rllp~~g--q~kL~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+..|++.|+.... ..+-+.+.+ .-+-|.-.-|+.. ..-+.+++|||-|+| ++|+++.+++++.+.++|.++|.
T Consensus 208 ~~lP~~~~l~~~~--~~lreI~ie--DLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~ 283 (588)
T COG1086 208 RILPQLTDLKDLN--GQLREIEIE--DLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR 283 (588)
T ss_pred EecCcHHHHHHhc--cccccCCHH--HHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC
Confidence 4566666655422 112222222 1134443444443 478999999999865 68999999999999999999887
Q ss_pred CcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhcc--
Q 005071 397 GRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS-- 474 (715)
Q Consensus 397 D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~-- 474 (715)
+..|-..+...|++.+|..++..+-.++ .+.+.+...+++
T Consensus 284 ----------------------~E~~~~~i~~el~~~~~~~~~~~~igdV----------------rD~~~~~~~~~~~k 325 (588)
T COG1086 284 ----------------------DEYKLYLIDMELREKFPELKLRFYIGDV----------------RDRDRVERAMEGHK 325 (588)
T ss_pred ----------------------chHHHHHHHHHHHhhCCCcceEEEeccc----------------ccHHHHHHHHhcCC
Confidence 5557777888999999999998887765 578888999998
Q ss_pred CCEEEEeCC
Q 005071 475 HDVIFLLTD 483 (715)
Q Consensus 475 ~DvV~~~tD 483 (715)
.|+||-+..
T Consensus 326 vd~VfHAAA 334 (588)
T COG1086 326 VDIVFHAAA 334 (588)
T ss_pred CceEEEhhh
Confidence 899997654
No 78
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.03 Score=58.09 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=66.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.+++|+|+|-+|..+|+.|...| ..+++||.|. + ++ .+.+... ....++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~--------------~--------~~---~~~~~~~---~~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDE--------------E--------RV---EEFLADE---LDTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCH--------------H--------HH---HHHhhhh---cceEEEEe
Confidence 47999999999999999999999 5677777632 1 11 1212211 22333332
Q ss_pred ccCCCCCCCCCccccccccchhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHh-cCCeEEEe
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITA 505 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~li~~~~~~-~~kp~I~a 505 (715)
+ -.+.+-|.++ ++++|+|+-+|++-+.-..+..++.+ +|.|-+-+
T Consensus 52 d----------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 52 D----------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred c----------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 1 1355666666 88999999999998877777777766 88987765
No 79
>PLN00203 glutamyl-tRNA reductase
Probab=96.33 E-value=0.012 Score=68.19 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=57.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
|.+++|+|||+|..|..++++|...|+.+|++++.. ..|++.+++.+ +++.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------------------~era~~La~~~----~g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------------------EERVAALREEF----PDVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------------------HHHHHHHHHHh----CCCceEe
Confidence 678999999999999999999999999999997652 22455544433 3333322
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
. ..+++.+.+.++|+||.||-+..
T Consensus 318 ~---------------------~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 318 K---------------------PLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred e---------------------cHhhHHHHHhcCCEEEEccCCCC
Confidence 2 23455677889999999997655
No 80
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.25 E-value=0.026 Score=63.76 Aligned_cols=35 Identities=49% Similarity=0.723 Sum_probs=32.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.+.+|+|+|+|++|..+++.|...|+.+|+++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999866
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.21 E-value=0.0077 Score=58.69 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=65.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHH--HHhhCCCcEEEEEe
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS--LERIFPAVAAEGVV 443 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~--L~~inP~v~v~~~~ 443 (715)
||.|+|+|..|+.+|..|+..| .+++|...+.= .++.+.+. -....|++....
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~----------------------~~~~i~~~~~n~~~~~~~~l~~-- 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE----------------------QIEEINETRQNPKYLPGIKLPE-- 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH----------------------HHHHHHHHTSETTTSTTSBEET--
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH----------------------HHHHHHHhCCCCCCCCCcccCc--
Confidence 7999999999999999999999 77777665430 11111110 001123322211
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEeeeCC
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~--~~~kp~I~aalG~ 509 (715)
. .. -..++++.++++|+||.++-+..-|..+.++.. ..+.++|.+.-|+
T Consensus 56 -~---------------i~-~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 56 -N---------------IK-ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -T---------------EE-EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred -c---------------cc-cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 0 11 235667788999999999999999999988877 5677888887676
No 82
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.21 E-value=0.029 Score=69.74 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=66.0
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcC-C------------eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHH
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-R------------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GV-g------------~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~ 428 (715)
-+.+||+|||||.+|..+|++|++.+- . .+++.|. ...+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------------------~~~~a~~la~ 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------------------YLKDAKETVE 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------------------CHHHHHHHHH
Confidence 357799999999999999999998532 1 2333333 2223433333
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
..|+++.... ++ .+.+.+.++++++|+|+.|+-.. .-..+...|.+.|+.++..
T Consensus 625 ----~~~~~~~v~l--Dv----------------~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 625 ----GIENAEAVQL--DV----------------SDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred ----hcCCCceEEe--ec----------------CCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEEC
Confidence 3354433332 22 35677888888999999999874 3355777888888888754
No 83
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.20 E-value=0.021 Score=61.67 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-eEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg-~ItLVD~ 396 (715)
+||.|+|+|++|+.+|..|+..|+. +|.|+|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4899999999999999999999985 8999997
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.17 E-value=0.016 Score=57.62 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.3
Q ss_pred hhccCeEEEEcCCh-HHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGg-LGs~VA~~La~~GVg~ItLVD~ 396 (715)
.|.+++|+|+|+|. +|..+|++|.+.|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 47899999999998 59999999999998 6888774
No 85
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.11 E-value=0.044 Score=57.00 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=68.9
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
++++.+|||||.|.+|.-=++.|+..| .+||+|-++.- .++ ..++ + .+. ++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~-------------~el--------~~l~----~-~~~--i~ 72 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFS-------------KEF--------LDLK----K-YGN--LK 72 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCC-------------HHH--------HHHH----h-CCC--EE
Confidence 577999999999999999999999999 77999876521 112 1111 1 222 33
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.+...+ . ...++++++||.|||+.+.-..+...|.+.++++..+
T Consensus 73 ~~~r~~-----------------~----~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 73 LIKGNY-----------------D----KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EEeCCC-----------------C----hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 333211 1 2235789999999999999999999999999987766
No 86
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.99 E-value=0.047 Score=51.29 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=64.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 366 KCLLLGA-GTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
||+|+|+ |-.|..+++.+.. -|+.=.-.+|... +. +-..|+ |. +.. +.-.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~---g~---------~~~----~~~~--- 53 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDV---GE---------LAG----IGPL--- 53 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBC---HH---------HCT----SST----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchh---hh---------hhC----cCCc---
Confidence 7999999 9999999999999 6766666777643 00 112333 20 000 0000
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCCc
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~~ 510 (715)
| ..-.++++++++.+|+|||.| +++.-.-.-++|.++++|+|.+.-|+.
T Consensus 54 ------~-----------~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 54 ------G-----------VPVTDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp ------S-----------SBEBS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred ------c-----------cccchhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 0 012356778888899999999 677777777888999999999887774
No 87
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.97 E-value=0.021 Score=62.95 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.3
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHH-hcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMA-WGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~-~GVg~ItLVD~ 396 (715)
.|++++|+|+|+ |.+|+.++++|+. .|+++|++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 478999999999 8999999999985 58999999865
No 88
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.91 E-value=0.052 Score=59.11 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=62.7
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..+++++|.|||.|.+|..+|+.|.+.|+ ++..+|... + .. +.+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~------~~-------------------~~~~- 176 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K------SW-------------------PGVQ- 176 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C------CC-------------------CCce-
Confidence 35789999999999999999999999997 566666411 0 00 0000
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHH---hcCCeEEEeee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCA---NTNKITITAAL 507 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~---~~~kp~I~aal 507 (715)
.+ .....++++++++|+|+.+. .+.+++.+++.-.. +.+..+||.+-
T Consensus 177 -~~--------------------~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 177 -SF--------------------AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred -ee--------------------cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence 10 02345778999999988876 57788998885322 33456677653
No 89
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.82 E-value=0.064 Score=59.71 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.6
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+...+|+|+|+|.+|..+++.|.++|+ +++++|.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4678899999999999999999999998 69999873
No 90
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.79 E-value=0.044 Score=59.76 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=66.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++|+|+|+|+.|-..+..|+ ..|+++|+++|. ...|++..++.+++.++ +++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence 4778999999999999988876 569999999876 23477777887765432 33332
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
+ ++.++.+.++|+|+.||-+.+ .++. -+.+.|+-++..
T Consensus 183 ~-----------------------~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 183 V-----------------------NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAV 220 (325)
T ss_pred e-----------------------CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEec
Confidence 2 234567789999999998774 3445 555667665543
No 91
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.78 E-value=0.011 Score=61.24 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=35.2
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D 397 (715)
.+++.||+|+|+|+.|..+|..|+..|++ +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999986
No 92
>PLN02928 oxidoreductase family protein
Probab=95.77 E-value=0.026 Score=62.21 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=65.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|+|||+|.+|..+|+.|...|. +++.+|... .+.. .... |. |.-.+
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~---~~--------------~~~~~ 207 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGL---LI--------------PNGDV 207 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhh---cc--------------ccccc
Confidence 46899999999999999999999999998 777777520 0000 0000 00 00000
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHh---cCCeEEEee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCAN---TNKITITAA 506 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~---~~kp~I~aa 506 (715)
...... ......++++++++|+|+.++ .+.+++.+++.-..+ .+..+||.+
T Consensus 208 ~~~~~~----------------~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 208 DDLVDE----------------KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccccc----------------cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 010000 012346789999999999987 577888888764443 344566765
No 93
>PRK09242 tropinone reductase; Provisional
Probab=95.74 E-value=0.056 Score=55.63 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=58.4
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
++++++++|.|+ |++|..+++.|+..|. ++++++.+ ..+.+.+.+.+...+|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~ 62 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREV 62 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeE
Confidence 367889999986 7999999999999996 58887752 12344556667666777777
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (715)
..+..++ ++ .++...-.+.+.+.+...|+||.+..
T Consensus 63 ~~~~~Dl-------~~--~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 63 HGLAADV-------SD--DEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred EEEECCC-------CC--HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7776554 00 01111111222223346789888875
No 94
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.68 E-value=0.045 Score=59.79 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=58.6
Q ss_pred ccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++|+|+|+|+.|-..++.|. ..|+.+|++++. ...|++..++++++.++ +++..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~ 184 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTA 184 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence 3578999999999999999997 478999999755 34588888888865432 33322
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
.+++++.+.++|+|+.||-+.
T Consensus 185 -----------------------~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 185 -----------------------ATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred -----------------------eCCHHHHhccCCEEEEecCCC
Confidence 234566778999999999773
No 95
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.65 E-value=0.055 Score=61.34 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=32.6
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+.+++|+|+|+|.+|..+|+.|.+.|+ +++++|.|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d 244 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD 244 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3689999999999999999999999998 78888864
No 96
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.05 Score=57.94 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=30.3
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..+++++|+|.|+ ||+|..+|+.|++.|. ++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567889999985 8999999999999997 6777665
No 97
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.088 Score=54.28 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=44.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
++++++|+|.|+ ||+|..+++.|+..|. ++.++|. ...+.+.+++.+.+.++..++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r----------------------~~~~~~~~~~~~~~~~~~~~~ 60 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL----------------------DAALAERAAAAIARDVAGARV 60 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhccCCceE
Confidence 467899999985 7999999999999996 5777764 223445556666655555666
Q ss_pred EEEeccc
Q 005071 440 EGVVMAI 446 (715)
Q Consensus 440 ~~~~~~I 446 (715)
..+..++
T Consensus 61 ~~~~~Dl 67 (260)
T PRK07063 61 LAVPADV 67 (260)
T ss_pred EEEEccC
Confidence 6665543
No 98
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.50 E-value=0.057 Score=58.68 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=57.0
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++|+|+|+|+.|...++.|.. .|+.+|++++. ...|++..++.+++.. +.+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g--~~~~~ 179 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQG--FDAEV 179 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CceEE
Confidence 57899999999999999987776 68899999765 3457888888877642 22222
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
. +..++.+.++|+|+.||.+.
T Consensus 180 ~-----------------------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 180 V-----------------------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred e-----------------------CCHHHHHhcCCEEEEeeCCC
Confidence 1 23455678999999999964
No 99
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.45 E-value=0.071 Score=57.16 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=27.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999996 57888763
No 100
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.086 Score=54.49 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=45.9
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
+++++++|.|+ ||+|..+|+.|++.|. ++++++.+. .|.+.+++.+.+.+|..++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~ 62 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE----------------------ERLASAEARLREKFPGARLL 62 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEE
Confidence 67889999987 6899999999999997 477766531 23445566677777777777
Q ss_pred EEeccc
Q 005071 441 GVVMAI 446 (715)
Q Consensus 441 ~~~~~I 446 (715)
.+..++
T Consensus 63 ~~~~D~ 68 (265)
T PRK07062 63 AARCDV 68 (265)
T ss_pred EEEecC
Confidence 776554
No 101
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.081 Score=54.71 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.8
Q ss_pred HhhccCeEEEEcC-C-hHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-G-TLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-G-gLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..+++++++|.|+ | |+|..+++.|+..|.. ++++|.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 3566789999997 6 7999999999999975 777654
No 102
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.37 E-value=0.0065 Score=60.79 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCccc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVA 400 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve 400 (715)
||.|||+|..|..+|..+++.| -+++++|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHH
Confidence 6999999999999999999999 789999985543
No 103
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.34 E-value=0.056 Score=57.26 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=68.5
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHh----cC------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHH
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~----GV------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~ 429 (715)
++|+..||+++|+|+.|..+|+.|+.+ |+ ++|.++|..=+=.. ++.+-...++.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~----------------~r~~l~~~~~~ 84 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTD----------------DREDLNPHKKP 84 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBT----------------TTSSHSHHHHH
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEec----------------cCccCChhhhh
Confidence 579999999999999999999999999 99 89999998643111 12111122222
Q ss_pred HHhh-CCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccC--CEEEEeCCChH--HHHHHHHHHHhcCCeEEE
Q 005071 430 LERI-FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDTRE--SRWLPTLLCANTNKITIT 504 (715)
Q Consensus 430 L~~i-nP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs~e--sR~li~~~~~~~~kp~I~ 504 (715)
+.+. +|. .....+.+.++.. |++|-++.-.. ++-++..++.....|+|.
T Consensus 85 ~a~~~~~~--------------------------~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 85 FARKTNPE--------------------------KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHBSSSTT--------------------------T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred hhccCccc--------------------------ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 2221 110 0113677788877 99999885333 567788888888899987
Q ss_pred e
Q 005071 505 A 505 (715)
Q Consensus 505 a 505 (715)
+
T Consensus 139 ~ 139 (255)
T PF03949_consen 139 P 139 (255)
T ss_dssp E
T ss_pred E
Confidence 6
No 104
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.33 E-value=0.14 Score=52.88 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=58.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcC---CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
+..||.|||+|..|..+++.|++.|. ..+++++.. ...|++.+++. + ++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~---------------------~~~~~~~~~~~----~-~~~- 55 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS---------------------NVEKLDQLQAR----Y-NVS- 55 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC---------------------CHHHHHHHHHH----c-CcE-
Confidence 45789999999999999999998873 223333210 11133332222 2 122
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh-cCCeEEEeeeCC
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITAALGF 509 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~-~~kp~I~aalG~ 509 (715)
.. .+..++++++|+||.|+-....+-++..+... .++.+|+.+-|.
T Consensus 56 -~~-----------------------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 56 -TT-----------------------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred -Ee-----------------------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECCCC
Confidence 11 12245567899999999888777777666532 356677765443
No 105
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.077 Score=57.09 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=45.1
Q ss_pred HhhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
..+++++|+|.| .||+|.++|+.|++.|. ++++++.+ ..|++.+.+.|.+.+|+.+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~----------------------~~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN----------------------RAKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC----------------------HHHHHHHHHHHHHhCCCCc
Confidence 456788999998 57899999999999995 67776542 2245555566666666666
Q ss_pred EEEEeccc
Q 005071 439 AEGVVMAI 446 (715)
Q Consensus 439 v~~~~~~I 446 (715)
+..+..++
T Consensus 67 v~~~~~Dl 74 (313)
T PRK05854 67 LSLRALDL 74 (313)
T ss_pred eEEEEecC
Confidence 66555444
No 106
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.08 Score=59.70 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=63.1
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.- + ..+...+.|.+. +++ .
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~-------------~--------~~~~~~~~l~~~--~~~--~ 56 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE-------------D--------QLKEALEELGEL--GIE--L 56 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------H--------HHHHHHHHHHhc--CCE--E
Confidence 678999999999999999999999995 7999887431 1 111122334332 233 2
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~ 504 (715)
+..+. . .+.+.++|+||.++......- .-..|+++|+|++.
T Consensus 57 ~~~~~-----------------~----~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 57 VLGEY-----------------P----EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred EeCCc-----------------c----hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 22111 0 134578999999988655433 44567888999886
No 107
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.081 Score=53.77 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|+|+ |++|..+++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 67889999996 88999999999999976 8888764
No 108
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.24 E-value=0.12 Score=53.71 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 67899999997 8999999999999997 6887765
No 109
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.19 E-value=0.093 Score=57.18 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=30.9
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCC-eEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg-~ItLVD~ 396 (715)
+..||.|||+|.+|+.+|..|+..|+- +|.|+|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 456999999999999999999999985 7999986
No 110
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.18 E-value=0.12 Score=55.26 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++|+|+|+||.|..++..|+..|+.+|++++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999999875
No 111
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.18 E-value=0.067 Score=57.57 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=32.2
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5789999999999999999999999997 8888776
No 112
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.17 E-value=0.11 Score=54.35 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=55.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC--CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV--g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
.+|.|||+|.+|+.+++.|.+.|. .+++++|+ ...+++.+++.+ ++.+ .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r----------------------~~~~~~~~~~~~-----g~~~--~ 53 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP----------------------SPEKRAALAEEY-----GVRA--A 53 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC----------------------CHHHHHHHHHhc-----CCee--c
Confidence 479999999999999999999984 34555543 111222222221 1111 0
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
....+.++++|+||.|+-....+-++..+....++.+|+.
T Consensus 54 -----------------------~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 54 -----------------------TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -----------------------CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 1123446789999999977666766666554335666665
No 113
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.14 E-value=0.04 Score=53.04 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=54.0
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCC-eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg-~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
.||.|||+ |.+|+.+|..|+..|+. +|.|+|.+ ..|++.-+.-|....+.......
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~----------------------~~~~~g~a~Dl~~~~~~~~~~~~ 58 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN----------------------EDKAEGEALDLSHASAPLPSPVR 58 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS----------------------HHHHHHHHHHHHHHHHGSTEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC----------------------cccceeeehhhhhhhhhcccccc
Confidence 38999999 99999999999999984 59999872 23666666666666443322221
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (715)
.. . ...+-++++|+||.+...
T Consensus 59 i~--------------------~-~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 59 IT--------------------S-GDYEALKDADIVVITAGV 79 (141)
T ss_dssp EE--------------------E-SSGGGGTTESEEEETTST
T ss_pred cc--------------------c-ccccccccccEEEEeccc
Confidence 10 0 223456899999988865
No 114
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.12 E-value=0.18 Score=51.70 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=61.0
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCC--CcEEEEE
Q 005071 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP--AVAAEGV 442 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP--~v~v~~~ 442 (715)
||.||| +|.+|+.+++.|+..| .+++++|.+ ..|++.+++....... .+.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~----------------------~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD----------------------LEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC----------------------HHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 577776541 2233333332221111 1110010
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH-hcCCeEEEeeeCC
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA-NTNKITITAALGF 509 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~-~~~kp~I~aalG~ 509 (715)
.....+.++++|+||.|+=....+.++..+.. ..++.+|++.-|.
T Consensus 59 ----------------------~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 59 ----------------------GADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL 104 (219)
T ss_pred ----------------------EeChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence 01123456789999999988777776666543 2357788875443
No 115
>PRK07574 formate dehydrogenase; Provisional
Probab=95.10 E-value=0.099 Score=58.60 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=61.6
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|.... +.+.. ... + +
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~----------------------~~~~~----~~~--g--~ 236 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL----------------------PEEVE----QEL--G--L 236 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC----------------------chhhH----hhc--C--c
Confidence 45899999999999999999999999997 5666664110 00000 000 1 1
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHH---hcCCeEEEee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCA---NTNKITITAA 506 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~---~~~kp~I~aa 506 (715)
+. ...++++++.+|+|+.++ .+.+++.+++.-.. +.+..+||.+
T Consensus 237 ~~-----------------------~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 237 TY-----------------------HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred ee-----------------------cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 11 124678899999988876 68888988875333 3344566654
No 116
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.08 E-value=0.094 Score=57.36 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=58.0
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++|+|+|+|+.|...+..|.. .|+.++++++. ...|++..++.+++.. ++++..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~-g~~v~~ 187 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAEL-GIPVTV 187 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhcc-CceEEE
Confidence 35789999999999999999986 67899999755 3447888888876543 233322
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
+ +++++.+.++|+|+.||-+.+
T Consensus 188 ~-----------------------~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 188 A-----------------------RDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred e-----------------------CCHHHHHccCCEEEEeeCCCC
Confidence 2 245667789999999997743
No 117
>PRK09186 flagellin modification protein A; Provisional
Probab=95.07 E-value=0.13 Score=52.52 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=27.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD 395 (715)
+++++|+|.|+ |++|..+|+.|++.|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999986 7999999999999996 466654
No 118
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.05 E-value=0.07 Score=57.92 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=31.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..|.+++|.|||.|.+|..+|+.|.+.|+ ++..+|.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 57999999999999999999999988887 6777775
No 119
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.04 E-value=0.11 Score=55.67 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=72.6
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHh----cC------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHH
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~----GV------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~ 429 (715)
.+|+..||+++|+|+.|..+|+.|+.+ |+ ++|.++|..=+=..+ |. |+ -..|..-+.+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r~------~l---~~~~~~~a~~- 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--RK------DL---TPFKKPFARK- 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--CC------cc---hHHHHHHHhh-
Confidence 578899999999999999999999999 99 799999986442111 21 12 2223332221
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhc--cCCEEEEeCC--ChHHHHHHHHHHHhcCCeEEEe
Q 005071 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTD--TRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tD--s~esR~li~~~~~~~~kp~I~a 505 (715)
.++ . ....+.+.++ +.|++|-++. ..=++-++..++.....|+|.+
T Consensus 89 ---~~~-------~--------------------~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 89 ---DEE-------K--------------------EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred ---cCc-------c--------------------cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 121 0 1235677888 7899999885 2335677888888888998876
No 120
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.02 E-value=0.068 Score=58.65 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.1
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..|.+++|.|||+|.+|..+|+.|.+.|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 5777776
No 121
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.00 E-value=0.14 Score=54.35 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|+|+|.+|+.+|..|+..| .+++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 7999999999999999999999 57999886
No 122
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.00 E-value=0.08 Score=57.33 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=58.3
Q ss_pred hccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
...++|+|+|+|+.|...++.|.. .|+.+|.+.|. ...|++..++.+++.. +.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~--~~~~ 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALG--PTAE 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CeeE
Confidence 357899999999999999999975 68889998766 3457888888887532 2222
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
..+.++.+.++|+|+.||-+.+
T Consensus 179 ------------------------~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 179 ------------------------PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred ------------------------ECCHHHHhhcCCEEEEccCCCC
Confidence 1234567789999999998854
No 123
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.97 E-value=0.14 Score=58.03 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=32.1
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+.+.+|+|+|+|.+|..+|+.+.+.|+ +++++|.|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3678999999999999999999999999 68888763
No 124
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.96 E-value=0.057 Score=55.69 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=64.6
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|+|||.|.+|.-=++.|+..| .+++++-.+. ..++ .. +.+..+ +.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-------------~~el--------~~----~~~~~~---i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-------------EPEL--------KA----LIEEGK---IK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-------------cHHH--------HH----HHHhcC---cc
Confidence 578999999999999999999999999 6777765533 1111 11 111111 11
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.+.. ..+ .+.+..+++||-+||+.+.-..+...|..+++|+-.+
T Consensus 60 ~~~~-----------------~~~----~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 60 WIER-----------------EFD----AEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred hhhc-----------------ccC----hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 1111 111 2233459999999999999888999999999976433
No 125
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.94 E-value=0.19 Score=53.62 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=58.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC---CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
+.||.+||+|-+|..+++.|...|. .+|++.|. .+.|++.+++. + +++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~l~~~----~-g~~-- 52 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKNASDK----Y-GIT-- 52 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHHHHHh----c-CcE--
Confidence 4589999999999999999999885 24555443 12233322221 1 222
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEeeeC
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALG 508 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~--~~~kp~I~aalG 508 (715)
... +..++++++|+||.|+-....+-++..+.. +.+..+|+.+-|
T Consensus 53 ~~~-----------------------~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 53 ITT-----------------------NNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred EeC-----------------------CcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCC
Confidence 111 123456789999999987777766666653 345677776444
No 126
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.93 E-value=0.14 Score=52.51 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ |++|..+|+.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999985 9999999999999997 5777765
No 127
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.93 E-value=0.056 Score=58.35 Aligned_cols=80 Identities=28% Similarity=0.500 Sum_probs=50.5
Q ss_pred EEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCC--cEEE--E
Q 005071 367 CLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA--VAAE--G 441 (715)
Q Consensus 367 VlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~--v~v~--~ 441 (715)
|||.| +|++|++++++|++.|..+|+++|.|.- +--.+.+.+++.+|+ +... .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~----------------------~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN----------------------KLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH----------------------HHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh----------------------HHHHHHHHHhhcccccCcccccCc
Confidence 67776 6789999999999999999999998543 444445555555544 4332 2
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhc--cCCEEEEeCCC
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDT 484 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs 484 (715)
+-.+| .+.+.+..+++ +.|+||-+..-
T Consensus 59 vigDv----------------rd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 59 VIGDV----------------RDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp -CTSC----------------CHHHHHHHHTT--T-SEEEE----
T ss_pred eeecc----------------cCHHHHHHHHhhcCCCEEEEChhc
Confidence 33222 46778888888 88999987653
No 128
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.86 E-value=0.2 Score=53.11 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357789999999999999999999996 89998864
No 129
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.85 E-value=0.11 Score=55.05 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=71.0
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCC----------eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHH
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR----------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg----------~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~ 429 (715)
++|++.||+++|+|+-|..+|+.|..+|++ +|.++|..=+=..+ |. |. -..|...+ +.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~--r~------~l---~~~~~~~~-~~ 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKN--RK------ET---CPNEYHLA-RF 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCC--CC------cc---CHHHHHHH-HH
Confidence 578999999999999999999999999998 99999986432111 11 11 11222211 11
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhc--cCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEe
Q 005071 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTR--ESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~--esR~li~~~~~~~~kp~I~a 505 (715)
.++. .....+.+.++ +.|++|-++--. =++-++..++.....|+|.+
T Consensus 89 ---~~~~--------------------------~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 89 ---ANPE--------------------------RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred ---cCcc--------------------------cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 1110 01246677788 889999887622 25667888888888898876
No 130
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.84 E-value=0.075 Score=57.86 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=62.0
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|++++|.|||.|.+|..||+.|...|++ +..+|.. ...++ .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~-------------~~~~~---~-------------------- 185 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK-------------GASVC---R-------------------- 185 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC-------------ccccc---c--------------------
Confidence 469999999999999999999999999984 5554421 00001 0
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEeee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAAL 507 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aal 507 (715)
. ....++++++++|+|+.++ -+.++|.+++.-..+. +..+||.+-
T Consensus 186 --~---------------------~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aR 234 (314)
T PRK06932 186 --E---------------------GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR 234 (314)
T ss_pred --c---------------------ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCC
Confidence 0 0124678899999999877 4788999988765543 445677653
No 131
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.83 E-value=0.11 Score=57.13 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=60.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..+.++||.|+|+|.+|.++|+.|-..| ..|.. ++-.+ ..++ .+.+...+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y--------~~r~~------------~~~~--~~~~~~~~------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY--------HSRTQ------------LPPE--EAYEYYAE------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee--------ecccC------------Cchh--hHHHhccc-------
Confidence 6889999999999999999999999977 44433 11111 1111 11111111
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEE-eCCChHHHHHHHHHHHhc---CCeEEEeeeC
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFL-LTDTRESRWLPTLLCANT---NKITITAALG 508 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~-~tDs~esR~li~~~~~~~---~kp~I~aalG 508 (715)
....+++..++|+|+. |-.+.+++.++|+-...+ +..+||.+.|
T Consensus 208 -------------------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 208 -------------------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred -------------------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 1234567788897655 558999999999855433 3355676544
No 132
>PRK06194 hypothetical protein; Provisional
Probab=94.80 E-value=0.16 Score=53.23 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|||.|+ |++|..+|+.|++.|. +++++|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999984 8999999999999996 6788776
No 133
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.79 E-value=0.075 Score=58.25 Aligned_cols=94 Identities=29% Similarity=0.383 Sum_probs=64.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|.|||+|-+|+.||+.|..+|+. +..+|+ |...+. + ..
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~-------------~~~~~~-------~--------------~~ 182 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP-------------YSPRER-------A--------------GV 182 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC-------------CCchhh-------h--------------cc
Confidence 368899999999999999999999999965 444444 111111 0 00
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEeeeC
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAALG 508 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aalG 508 (715)
.++ .....++++++++|+|+..+ -+.++|.+++..-.+. |-.+||++-|
T Consensus 183 ~~~--------------------~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG 235 (324)
T COG0111 183 DGV--------------------VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARG 235 (324)
T ss_pred ccc--------------------eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCc
Confidence 111 12456889999999998876 5778999988755433 4467787644
No 134
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.79 E-value=0.17 Score=54.96 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
..++.++|.|+ ||+|.++|+.|++.|. ++.+++.+ ..|.+.+++.|++.++..++.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~----------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN----------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 35789999986 7899999999999997 68887752 224556677777777777777
Q ss_pred EEeccc
Q 005071 441 GVVMAI 446 (715)
Q Consensus 441 ~~~~~I 446 (715)
.+..++
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 766554
No 135
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.15 Score=54.88 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=28.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+||.|||+|.+|+.+|..|++.|. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 579999999999999999999996 6888886
No 136
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.74 E-value=0.085 Score=57.36 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=63.0
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|.|||.|.+|..||+.|...|. ++..+|.-. +. .+. |
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~-------~~-----~~~---~-------------------- 184 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG-------KN-----KNE---E-------------------- 184 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc-------cc-----ccc---C--------------------
Confidence 46999999999999999999999998887 566666510 00 000 0
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhcC---CeEEEeee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANTN---KITITAAL 507 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~~---kp~I~aal 507 (715)
+ ....++++++.+|+|+.++ -+.++|.+++.-..+.= ..+||.+-
T Consensus 185 --~---------------------~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aR 233 (311)
T PRK08410 185 --Y---------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGR 233 (311)
T ss_pred --c---------------------eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCC
Confidence 0 0124678899999988877 47789999887665443 45667653
No 137
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.70 E-value=0.09 Score=57.31 Aligned_cols=87 Identities=26% Similarity=0.248 Sum_probs=61.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|.|+|+|.+|..||+.|...|+ ++..+|... + ....
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~-------~-----~~~~------------------------ 186 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG-------R-----PARP------------------------ 186 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-------C-----cccc------------------------
Confidence 46999999999999999999999999997 455555310 0 0000
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEeee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAAL 507 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aal 507 (715)
....++++++.+|+|+.++ -+.++|.+++.-..+. +-.+||.+-
T Consensus 187 ------------------------~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 187 ------------------------DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred ------------------------cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 0013678899999998876 5788999988765544 345667653
No 138
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.70 E-value=0.16 Score=57.33 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+.+++|+|+|+|.+|..+|+.|..+|. +++++|.|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~d 227 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVD 227 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCC
Confidence 689999999999999999999999998 58888864
No 139
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.69 E-value=0.055 Score=47.41 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.9
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+..++++|+|+|+.|..++..|...|..+++++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999999899999988
No 140
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.66 E-value=0.19 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhc-CCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWG-VRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~G-Vg~ItLVD~D 397 (715)
+++++|+|.|+ |++|+.+++.|++.| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46789999985 899999999999987 4578888753
No 141
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.62 E-value=0.28 Score=50.00 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
..|++++|+|+|+|.+|..+|+.|.+.|. +++++|.+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45789999999999999999999999996 67788754
No 142
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.57 E-value=0.19 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=29.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
..||.|+|+|.+|+.+|+.|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999994 78888875
No 143
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.54 E-value=0.23 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.9
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 366789999997 9999999999999997 5777665
No 144
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.54 E-value=0.17 Score=51.38 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=30.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|+|+ |++|..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999997 9999999999999997 5888874
No 145
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.54 E-value=0.16 Score=55.31 Aligned_cols=31 Identities=35% Similarity=0.645 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999999999998 68999985
No 146
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.54 E-value=0.28 Score=53.82 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred hhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEe
Q 005071 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 357 ~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD 395 (715)
.+++.|++++|.|||.|.+|..+|++|...|+ ++++.|
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 35688999999999999999999999999998 555554
No 147
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.22 Score=53.02 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.6
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..+++++|+|.|+ ||+|..+|+.|+..|. ++.+++.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 4577889999986 9999999999999996 6777664
No 148
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.47 E-value=0.18 Score=52.80 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV 388 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV 388 (715)
||.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999884
No 149
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.44 E-value=0.14 Score=55.83 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCC-eEEEEeC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg-~ItLVD~ 396 (715)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 45999999999999999999999984 6999986
No 150
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.40 E-value=0.28 Score=51.83 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=58.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHh-cCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAW-GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~-GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
.||+|+|+ |.+|..+++.+... ++.-..++|.+. .| . .. + ....+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~------~~--------~---~~-~------------~~~~i--- 48 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG------SP--------L---VG-Q------------GALGV--- 48 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------cc--------c---cc-c------------CCCCc---
Confidence 48999999 99999999998864 455555566532 11 0 00 0 00000
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCCc
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~~ 510 (715)
....++++++++.|+|++++ ++..-.-....|.++|+++|-+..|+.
T Consensus 49 --------------------~~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 49 --------------------AITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred --------------------cccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 01234455666789999988 445556677888899999886555553
No 151
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.38 E-value=0.48 Score=55.68 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.2
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.-.+++|+|.|+ |++|..+++.|++.|. ++++++.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 3445678999986 8999999999999995 5555544
No 152
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.33 E-value=0.3 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.584 Sum_probs=21.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV 388 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV 388 (715)
||.+||+|.+|+.+++.|.+.|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999985
No 153
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.31 E-value=0.11 Score=54.27 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=63.4
Q ss_pred hccCeEEEE-cCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 362 LSSRKCLLL-GAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 362 L~~~kVlIv-GaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
+.++.++++ ||||+|-.+++.|+.-|+..+.+.|+ .+. -.+..+|+++||.+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En---------~~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN---------PEAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC---------HHHHHHHhccCCCceEE
Confidence 467888887 69999999999999999999988665 111 23455799999999999
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT 482 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t 482 (715)
-+..++-+ ..+.+...++.-..+...||+|+..
T Consensus 59 F~~~DVt~---------~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 59 FIKCDVTN---------RGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEecccc---------HHHHHHHHHHHHHHhCceEEEEccc
Confidence 99987722 1122333344445556779988744
No 154
>PRK07680 late competence protein ComER; Validated
Probab=94.31 E-value=0.24 Score=52.40 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=26.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~ 396 (715)
+|.|||+|.+|+.+++.|.+.|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 69999999999999999999984 45666544
No 155
>PLN03139 formate dehydrogenase; Provisional
Probab=94.30 E-value=0.16 Score=57.02 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..|.+++|.|||+|.+|..+|+.|...|++ +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 468999999999999999999999999975 556664
No 156
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.27 Score=52.43 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999995 69999864
No 157
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.29 E-value=0.22 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=32.1
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..|++++|.|||+|.+|..+|+.|.+.|. ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~ 177 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA 177 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46899999999999999999999999996 6777775
No 158
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.28 Score=51.23 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++++|.|+ ||+|..+|+.|++.|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999986 6899999999999996 6888775
No 159
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.23 E-value=0.32 Score=49.64 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=28.4
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999998 59999999999999996 5666554
No 160
>PRK04148 hypothetical protein; Provisional
Probab=94.23 E-value=0.4 Score=46.20 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=70.3
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
++.||++||+| .|..+|+.|+..|. .++.+|.+. ..++.+++. . +..+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~----------------------~aV~~a~~~------~--~~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE----------------------KAVEKAKKL------G--LNAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH----------------------HHHHHHHHh------C--CeEE
Confidence 45789999999 89999999999994 888888622 123333222 1 2333
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCCce
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDS 511 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~~g 511 (715)
..++ .+--.++.+++|+|..+-=.+|-..-+-+++.+.+.+++--.++.+.
T Consensus 64 ~dDl------------------f~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 64 VDDL------------------FNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ECcC------------------CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3332 11113567899999999999998888889999999998876665543
No 161
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.28 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=29.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++++|.|+ ||+|..+|+.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999985 7999999999999997 5777665
No 162
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.33 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=29.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|.|+ ||+|..+|+.|++.|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67889999997 8999999999999996 5766654
No 163
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.16 E-value=0.29 Score=49.59 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.4
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|.| .|++|..+++.|++.|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999998 69999999999999996 67777664
No 164
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.25 Score=50.58 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.3
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+++.|++.|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999986 9999999999999997 5777655
No 165
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.39 Score=48.74 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=28.3
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+|+.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56889999996 89999999999999964 555543
No 166
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.02 E-value=0.33 Score=52.48 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=29.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
..||+|+|+|++|+.+|-.|.+.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999994 78898874
No 167
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.97 E-value=0.37 Score=50.23 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=30.8
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|.|+ |++|..+++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 8999999999999998 68887763
No 168
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.97 E-value=0.15 Score=57.10 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 334 PTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 334 p~~la~~a~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
....+|.+.-+=+.+.|.. + ..|++++|.|||+|.+|+.+|+.|.+.|++ +..+|+
T Consensus 92 a~aVAE~~~~~lL~l~r~~-----g-~~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 92 AIAVVEYVFSSLLMLAERD-----G-FSLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred chHHHHHHHHHHHHHhccC-----C-CCcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 3445666665434444431 1 358999999999999999999999999974 455563
No 169
>PLN02427 UDP-apiose/xylose synthase
Probab=93.95 E-value=0.37 Score=53.20 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=31.9
Q ss_pred hHHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 358 NLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 358 gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+-++++..||||.|+ |-+|+.+++.|+..|--+++.+|.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 446788889999995 999999999999985346777775
No 170
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.34 Score=49.41 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.5
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
+++|+|.| .||+|..+|+.|++.|. ++++++.+. .+.+.+.+.+.+.+|..++..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT----------------------DRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 56789997 88999999999999994 788876621 1233445556666777777777
Q ss_pred eccc
Q 005071 443 VMAI 446 (715)
Q Consensus 443 ~~~I 446 (715)
..++
T Consensus 59 ~~D~ 62 (248)
T PRK08251 59 ALDV 62 (248)
T ss_pred EcCC
Confidence 6654
No 171
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.91 E-value=0.16 Score=55.64 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=60.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
..|.+++|.|||.|.+|..||+.|. ..|+ ++...|. +...+. . .+. ++
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~-------------~~~~~~----------~----~~~--~~- 189 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNAR-------------RHHKEA----------E----ERF--NA- 189 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECC-------------CCchhh----------H----Hhc--Cc-
Confidence 3689999999999999999999997 7776 3445443 000000 0 000 01
Q ss_pred EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEeee
Q 005071 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAAL 507 (715)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aal 507 (715)
....++++++++|+|+.++ -+.++|.+++.-..+. +..+||.+-
T Consensus 190 -------------------------~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 190 -------------------------RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGR 237 (323)
T ss_pred -------------------------EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCC
Confidence 0124678899999998866 5788999888654433 445667653
No 172
>PLN02602 lactate dehydrogenase
Probab=93.88 E-value=0.21 Score=55.33 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999998 57999986
No 173
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.85 E-value=0.38 Score=55.35 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=68.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc--HHHHHHHHHHhh-CCCcEEEE
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF--KAMAAVKSLERI-FPAVAAEG 441 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~--KAeaaa~~L~~i-nP~v~v~~ 441 (715)
++|.|||+|..|..+|++|++.|. ++++.|.+.=...-+... ..+.|.. -+...++.+..+ .|.+-+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999997 688888743221111100 0000100 112223333332 25544433
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEee
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~li~~~~~~~~kp~I~aa 506 (715)
+. ||.++ ....+.+...++.-|+|||++-+. .++... ..+.++|+-+|+++
T Consensus 74 v~-----~~~~v--------~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~fldap 126 (470)
T PTZ00142 74 IK-----AGEAV--------DETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGILYLGMG 126 (470)
T ss_pred eC-----ChHHH--------HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCeEEcCC
Confidence 32 12221 112245555667789999998763 344443 56677899898863
No 174
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.85 E-value=0.3 Score=46.49 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=59.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
+.|+|+| .||+|-.+|+.|++.|-.++.+++.. + -..+++.+.+.++.. +.++..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~--~~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAP--GAKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----ccccccccccccccc--cccccccc
Confidence 4688887 78999999999999999999998874 1 134566666777744 47777776
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
.++ + ..++.+.-.+.+.+.....|+||.+.....
T Consensus 59 ~D~-------~--~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 59 CDL-------S--DPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp SET-------T--SHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccc-------c--cccccccccccccccccccccccccccccc
Confidence 554 1 111122222223333347889988776443
No 175
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.41 Score=48.70 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++++|.|+ |++|..+|+.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 57889999986 8999999999999995 5777664
No 176
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.83 E-value=0.23 Score=57.09 Aligned_cols=36 Identities=17% Similarity=0.463 Sum_probs=32.5
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.|.+++|+|+|+|.+|..+|+.|.+.|. +++++|.|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5899999999999999999999999998 68887664
No 177
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.80 E-value=0.38 Score=49.47 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=27.2
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++|+|.|+ |++|..+|+.|+..|. ++.++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r 34 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADI 34 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467999986 6999999999999996 6788875
No 178
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.76 E-value=0.094 Score=55.94 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
+||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999995 688888753
No 179
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.76 E-value=0.23 Score=52.84 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|+|+|++|+.+|..|++.|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999984 5777764
No 180
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.74 E-value=0.26 Score=53.19 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=51.0
Q ss_pred EEEEcCChHHHHHHHHHHHhcC-CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE-EEEEec
Q 005071 367 CLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA-AEGVVM 444 (715)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GV-g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~-v~~~~~ 444 (715)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+ +.|++..+..|....+... .+.+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~----------------------~~~~~g~~~DL~~~~~~~~~~~i~~- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN----------------------EEKAKGDALDLSHASAFLATGTIVR- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC----------------------ccHHHHHHHhHHHhccccCCCeEEE-
Confidence 5799999999999999999997 679999972 3355566666766654311 11110
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (715)
. .+ .+-++++|+||.+...
T Consensus 58 -------------------~-~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 -------------------G-GD-YADAADADIVVITAGA 76 (300)
T ss_pred -------------------C-CC-HHHhCCCCEEEEcCCC
Confidence 1 11 2356889999998875
No 181
>PLN02306 hydroxypyruvate reductase
Probab=93.72 E-value=0.16 Score=56.94 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=64.3
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCC-Cc
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP-AV 437 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP-~v 437 (715)
..|.+++|.|||.|.+|..+|+.|. ..|+ ++..+|...- ....+ .. ... | ..++.... .+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~--~~~~~-~~---~~~---~--------~~l~~~~~~~~ 222 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQS--TRLEK-FV---TAY---G--------QFLKANGEQPV 222 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCc--hhhhh-hh---hhh---c--------ccccccccccc
Confidence 3589999999999999999999986 7787 5777776210 00000 00 000 1 00000000 00
Q ss_pred EEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEee
Q 005071 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAA 506 (715)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aa 506 (715)
.+ .....++++++++|+|+.++ -+.++|.+++.-..+. +..+||.+
T Consensus 223 ~~-----------------------~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 223 TW-----------------------KRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred cc-----------------------cccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 00 01235789999999999954 5788999998765543 44567766
No 182
>PLN02494 adenosylhomocysteinase
Probab=93.70 E-value=0.26 Score=56.60 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=32.0
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+.+++|+|+|+|.+|..+|+.+.+.|+ +++++|.|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~d 286 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEID 286 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 789999999999999999999999998 68888764
No 183
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.68 E-value=0.35 Score=51.31 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=25.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhc--CCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWG--VRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~G--Vg~ItLVD~D 397 (715)
.||.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998864 4445556653
No 184
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.68 E-value=0.33 Score=52.73 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=27.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.||.|||+|..|+.+|..|++.|. +++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 479999999999999999999984 5777766
No 185
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.3 Score=50.81 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=31.4
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3578899999987 8999999999999996 47887763
No 186
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.67 E-value=0.81 Score=44.48 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=56.3
Q ss_pred EEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
|+|+|+ |.+|..+++.|.+.| -+++.+= | ...|.+. .+.+++. ..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R------------~~~~~~~--------~~~~~~~--~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------R------------SPSKAED--------SPGVEII--QGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------S------------SGGGHHH--------CTTEEEE--ESC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------c------------Cchhccc--------ccccccc--eee
Confidence 799998 999999999999999 5565522 2 2223333 4555544 332
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHH----HHHHHHHHHhcCCe
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES----RWLPTLLCANTNKI 501 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~es----R~li~~~~~~~~kp 501 (715)
+ .+.+.+.+.++++|+||.+.-.... -..+-.+|.+.+++
T Consensus 48 ~----------------~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 48 L----------------FDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp T----------------TCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred e----------------hhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 2 4567888889999999999863221 12344455566654
No 187
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.64 E-value=0.18 Score=48.08 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=25.6
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
|+|+|+|++|+.+|-.|.+.|. ++++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEcc
Confidence 7899999999999999999774 47776653
No 188
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.60 E-value=0.55 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGV 388 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV 388 (715)
..||.+||+|..|..+++.|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 189
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.59 E-value=0.36 Score=53.80 Aligned_cols=112 Identities=11% Similarity=0.170 Sum_probs=69.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcC------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHh--hC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER--IF 434 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~--in 434 (715)
...||.|+|+|.=|+++|..|+..|. .++++...+. ++. ++.- ++.+++ .|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~--~~~~----~~~in~~~~N 68 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVE--GEKL----SDIINTKHEN 68 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------ccc--chHH----HHHHHhcCCC
Confidence 44689999999999999999999874 3566654321 110 2212 222322 12
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH----hcCCeEEEeeeCCc
Q 005071 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA----NTNKITITAALGFD 510 (715)
Q Consensus 435 P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~----~~~kp~I~aalG~~ 510 (715)
+ . ..||..+.+. .. ...++.+.++++|+||.++=+...|..+..+.. ..+.++|+++-|++
T Consensus 69 ~----~------ylp~~~Lp~n----i~-~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 69 V----K------YLPGIKLPDN----IV-AVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred c----c------cCCCCcCCCc----eE-EecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 1 0 1233333210 11 123556788999999999999999998888854 23457888766654
No 190
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.056 Score=57.93 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+||.|||+|..|+.+|..|++.|. .++++|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 489999999999999999999995 79999874
No 191
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.33 Score=55.39 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=31.8
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|+|+|++|..+|+.|...|. +++++|..
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899999999999999999999997 59999864
No 192
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.41 Score=48.34 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.3
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.+.+|+|+|+ |++|..+++.|+..|.. +++++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999986 89999999999999974 777654
No 193
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.56 E-value=0.5 Score=51.90 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.||.|+|+|..|+.+|..|++.| +++++..+.- + .+.+++...... ....
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~----------------------~----~~~i~~~~~~~~--~l~~ 57 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAE----------------------T----ADDINDNHRNSR--YLGN 57 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHH----------------------H----HHHHHhcCCCcc--cCCC
Confidence 57999999999999999999998 4555433211 1 111221111000 0000
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc--CCeEEEeeeCCc
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--NKITITAALGFD 510 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~--~kp~I~aalG~~ 510 (715)
.+..|.. .. ...++.+.++++|+||.++=+...+..+..+.... +.++|+..-|+.
T Consensus 58 ~~~l~~~---------i~-~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 58 DVVLSDT---------LR-ATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CcccCCC---------eE-EECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 0000000 00 11234456789999999999999999888886533 446777654553
No 194
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.50 E-value=0.33 Score=49.30 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++++|.| .|++|..+++.|++.|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4688999998 58899999999999986 5676664
No 195
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.34 Score=51.03 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=29.5
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.| .||||..+|+.|++.|. ++.++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36788899997 78999999999999997 4777664
No 196
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.45 E-value=0.47 Score=44.12 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred hccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe--eeCCce
Q 005071 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFDS 511 (715)
Q Consensus 472 i~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a--alG~~g 511 (715)
+++.|+||.|+++..++-+...+ .+.|+.+|+. .+.++.
T Consensus 64 ~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~ 104 (121)
T PF01118_consen 64 LSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDD 104 (121)
T ss_dssp HTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTST
T ss_pred hhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCC
Confidence 48999999999998887776666 8899999986 355543
No 197
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.34 Score=49.65 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+|+.|++.|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56889999986 7999999999999995 5777765
No 198
>PLN02240 UDP-glucose 4-epimerase
Probab=93.42 E-value=0.44 Score=51.41 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=29.3
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999986 9999999999999995 6888774
No 199
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.40 E-value=0.46 Score=54.44 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=67.0
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|++++|+|||.|.+|..=++.|...|. +||+|=.+. + .++ .. +.+ .-+++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-~~~--------~~----l~~---~~~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-PQF--------TA----WAD---AGMLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-HHH--------HH----HHh---CCCEE
Confidence 5789999999999999999999999994 788875431 1 111 11 111 11233
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.+...+ . .+.++++++||.|||+.+.-..+...|.+.++++-.+
T Consensus 60 ~~~~~~-----------------~----~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 60 LVEGPF-----------------D----ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEeCCC-----------------C----hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 333211 1 2446889999999999998888899999999876444
No 200
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.39 E-value=0.55 Score=50.04 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=58.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
+|.|||+|.+|..+++.|.+.|. .++.+++.+. ..|.+. +...++.+.+ .
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~---------------------~~~~~~----l~~~~~~~~~--~ 55 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK---------------------NEHFNQ----LYDKYPTVEL--A 55 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc---------------------HHHHHH----HHHHcCCeEE--e
Confidence 69999999999999999999983 4566665521 011111 2222222221 0
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEeeeCC
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~--~~~kp~I~aalG~ 509 (715)
.+..++++++|+||.|+=....+-++..+.. ..++.+|+..-|.
T Consensus 56 -----------------------~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 56 -----------------------DNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -----------------------CCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 1223456789999999987777766666643 3456777764343
No 201
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.37 E-value=0.71 Score=41.87 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=57.5
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEeccc
Q 005071 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAI 446 (715)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~I 446 (715)
|+|+|.|.+|-.+++.|.. +-.+++++|.|.= +++ .+++.. +. .+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~----------------------~~~----~~~~~~--~~--~i~g-- 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE----------------------RVE----ELREEG--VE--VIYG-- 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH----------------------HHH----HHHHTT--SE--EEES--
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH----------------------HHH----HHHhcc--cc--cccc--
Confidence 6899999999999999999 5478999998431 222 222222 22 3332
Q ss_pred CCCCCCCCCccccccccchhhHHH-hhccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005071 447 PMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTN 499 (715)
Q Consensus 447 pmpgh~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~esR~li~~~~~~~~ 499 (715)
.+ .+.+.+.+ -++++|.|+.++++.+.-..+...++..+
T Consensus 48 ----d~----------~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~ 87 (116)
T PF02254_consen 48 ----DA----------TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELN 87 (116)
T ss_dssp -----T----------TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHT
T ss_pred ----cc----------hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHC
Confidence 11 23344433 36789999999999888888888887633
No 202
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.35 E-value=0.16 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=28.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
||+|||+|-+|+++|..|++.| .++|+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEeccc
Confidence 6999999999999999999999 5888888743
No 203
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.34 E-value=0.24 Score=54.27 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=31.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
++-.||+|+|+ |.+|+.+|..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 46679999999 9999999999998776 47999998
No 204
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.32 E-value=0.58 Score=50.71 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||.|+|+|.+|+.+|..|++.| .++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence 6999999999999999999999 56778765
No 205
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.28 E-value=0.41 Score=51.56 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
..+|+|||+|.+|..+|+.|.+.|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888876
No 206
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.54 Score=48.48 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=30.9
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67889999997 7999999999999998 88887763
No 207
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.26 E-value=0.32 Score=53.47 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.8
Q ss_pred hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEe
Q 005071 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD 395 (715)
+...|++++|.|||+|..|..+|++|...|+ ++++.+
T Consensus 11 ~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 11 DLSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred ChhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 4578899999999999999999999999998 455444
No 208
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.24 E-value=0.53 Score=47.92 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~I 391 (715)
+.+++|+|.|+ |++|..+++.|+..|..-+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999985 7999999999999996544
No 209
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.23 E-value=0.2 Score=49.07 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=60.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
+||.+||+|-.|+.+|++|++.|. ++++.|.+.=...-+. +. |-..+...++.+++- ++-+..+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~--------~~---g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALA--------EA---GAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHH--------HT---TEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhH--------Hh---hhhhhhhhhhHhhcc--cceEeeccc
Confidence 489999999999999999999996 5777775431111111 11 222223333333332 333333221
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhcCCeEEEee
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~li~~~~~~~~kp~I~aa 506 (715)
....+......+ +...+..-.+|||++- +++.-..+.+.+..+|..+|++.
T Consensus 68 ----------~~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 68 ----------DDAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp ----------HHHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ----------chhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 000011111111 3333445678888765 44555667778888999999875
No 210
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.23 E-value=0.38 Score=49.55 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=31.1
Q ss_pred HhhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
-++++++++|.| .|++|..+|+.|+..|. ++++++.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 457889999998 59999999999999997 6777765
No 211
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.65 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 357789999997 9999999999999995 5777665
No 212
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.16 E-value=0.31 Score=55.06 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=61.7
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..|.+++|.|||.|.+|..+|+.|.+.|. ++..+|... + ... + . +
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------~------~~~---~----------------~--~ 191 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------K------LPL---G----------------N--A 191 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------c------ccc---C----------------C--c
Confidence 46899999999999999999999999997 566666310 0 000 0 0 0
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHhc---CCeEEEee
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAA 506 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~li~~~~~~~---~kp~I~aa 506 (715)
. ....++++++.+|+|+.++ -+.++|.+++.-.... +..+||.+
T Consensus 192 ~-----------------------~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 192 R-----------------------QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred e-----------------------ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 0 1125678999999988876 4677999988755443 33466654
No 213
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.03 E-value=0.13 Score=55.98 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=33.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++.||.|||+|.+|..+|..|+..|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999974
No 214
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.00 E-value=0.61 Score=47.09 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD 395 (715)
|.+++++|+|+ |++|..+++.|+..|...+.+++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 66789999986 89999999999999976444324
No 215
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.98 E-value=0.36 Score=53.30 Aligned_cols=111 Identities=14% Similarity=0.259 Sum_probs=67.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV-------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
||.|||+|.-|+.+|..|+..|. .++++...+. ++. +. ...+.+++...+.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~--~~----~~~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE--GR----NLTEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC--CH----HHHHHHHhcCCCcc
Confidence 68999999999999999998883 4566654421 110 11 11233333221111
Q ss_pred EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEeeeCCc
Q 005071 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGFD 510 (715)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~--~~~kp~I~aalG~~ 510 (715)
. .||-.+.+ ... -..++++.++++|+||.++=+...|..+..+.. ..++++|+++-|++
T Consensus 60 --y------lpgi~Lp~----~i~-at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 60 --Y------LPGIKLPA----NLV-AVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred --c------cCCCcCCC----CeE-EECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 0 11211111 011 123567788999999999999999998887753 34678898876664
No 216
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.37 Score=52.59 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.2
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ ||+|..+|+.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467889999997 8999999999999996 5777765
No 217
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.95 E-value=0.42 Score=48.68 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999997 7999999999999997 6777664
No 218
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.94 E-value=0.61 Score=48.05 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.0
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57999987 9999999999999996 7887765
No 219
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.44 Score=49.42 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=31.4
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++++|.|+ ||+|..+|+.|++.|. +++++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999986 9999999999999997 78887764
No 220
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=92.90 E-value=0.52 Score=50.63 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.+++|+|.|+ ||+|..+++.|++.| -++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 45778999985 899999999999999 46777765
No 221
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.85 E-value=0.34 Score=52.65 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.||+|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999994 68888864
No 222
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.82 E-value=0.16 Score=50.44 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=61.7
Q ss_pred HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcE
Q 005071 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (715)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~ 438 (715)
...|.+++|.|+|+|.+|..||+.|...|+ ++..+|...- ... .....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~-----------------------~~~---~~~~~----- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK-----------------------PEE---GADEF----- 78 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH-----------------------HHH---HHHHT-----
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC-----------------------hhh---hcccc-----
Confidence 468999999999999999999999999998 7888776221 111 00110
Q ss_pred EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEee
Q 005071 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAA 506 (715)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~li~~~~~~~---~kp~I~aa 506 (715)
......++++++++|+|+.+.- +.+++.+++.-..+. +..+||.+
T Consensus 79 -----------------------~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 79 -----------------------GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp -----------------------TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred -----------------------cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 0123366788999999998775 667888877655543 33566654
No 223
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.80 E-value=0.67 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEe
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD 395 (715)
|++++|.|||+|.+|..+|++|...|+. +++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5789999999999999999999999973 44433
No 224
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.76 E-value=0.47 Score=48.68 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467899999986 7999999999999999888888763
No 225
>PRK08589 short chain dehydrogenase; Validated
Probab=92.74 E-value=0.52 Score=49.26 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=29.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++|+|.|+ ||+|..+|+.|+..|. ++.+++.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999987 8999999999999995 5666654
No 226
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.73 E-value=0.15 Score=55.65 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.6
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++..||.|||+|.+|+.+|..|+..|+..|.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 566899999999999999999999998679999973
No 227
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.71 E-value=0.59 Score=49.89 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.3
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHh--cCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~--GVg~ItLVD~D 397 (715)
+..||.|||+|.+|..+++.|... |+.-..+.|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 446899999999999999999874 44333355653
No 228
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.70 E-value=0.57 Score=52.47 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=61.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHh--cCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCc-EEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV-AAE 440 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~--GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v-~v~ 440 (715)
.++++|+|+|.-|-.-++.++.. +++++.+.|. ...|+++.++++.+.++++ ++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~ 212 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE 212 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence 67999999999999999999874 4888888765 4558889999998877654 354
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
.. +..++.++++|||+.||-+.+
T Consensus 213 ~~-----------------------~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 213 VV-----------------------DSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred Ee-----------------------CCHHHHHcCCCEEEEccCCCC
Confidence 43 235677899999999997643
No 229
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.69 E-value=0.89 Score=51.19 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=58.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+++.+.+. .+ +..+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~----------------------~~~~~~~~~-----~~--~~~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE----------------------ERLRRLQDR-----LD--VRTVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH----------------------HHHHHHHhh-----cC--EEEEEeC
Confidence 79999999999999999999985 577877622 122222221 12 2233221
Q ss_pred cCCCCCCCCCccccccccchhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHhc-CCe
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT-NKI 501 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~li~~~~~~~-~kp 501 (715)
. .+...+.+. ++++|.||.++++.+.-..+...++.. +.+
T Consensus 52 ~----------------~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~ 93 (453)
T PRK09496 52 G----------------SSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAP 93 (453)
T ss_pred C----------------CCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCC
Confidence 1 234455555 788999999998877766666777765 443
No 230
>PRK06196 oxidoreductase; Provisional
Probab=92.69 E-value=0.57 Score=50.20 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ ||+|..+|+.|+..|. ++++++.
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R 58 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPAR 58 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 8999999999999996 5777765
No 231
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.54 Score=47.76 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=30.2
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 466889999986 9999999999999997 57776653
No 232
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.56 E-value=0.61 Score=47.72 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+|+.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999985 8999999999999997 7888774
No 233
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.69 Score=48.64 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=26.1
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++.++|.|+||+|..+|+.|+ .| .++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence 457888999999999999996 78 57888776
No 234
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.53 E-value=0.21 Score=54.67 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=28.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+||.|||+|..|+.+|..++..| -.++++|.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 58999999999999999999999 567788864
No 235
>PRK05717 oxidoreductase; Validated
Probab=92.52 E-value=0.54 Score=48.36 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=29.9
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|.|+ |++|..+|+.|++.|. ++.++|..
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 56789999985 8999999999999995 78888754
No 236
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.49 E-value=0.52 Score=51.40 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.9
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ ||+|..+|+.|++.|. ++++++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467789999986 8999999999999996 6777764
No 237
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.74 Score=46.89 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++|+|.| .|++|..+++.|++.|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 5789998 59999999999999996 57887763
No 238
>PLN02253 xanthoxin dehydrogenase
Probab=92.47 E-value=0.76 Score=47.97 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.9
Q ss_pred HhhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.++++++++|.| .|++|..+|+.|+..|. ++.++|.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 357788999997 57999999999999995 5777764
No 239
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.45 E-value=0.27 Score=53.90 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=28.5
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~ 396 (715)
..|++++|.|||+|.+|..+|+.|+ +.|+ ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~ 178 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDP 178 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 4689999999999999999999995 4454 4555553
No 240
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.43 E-value=0.6 Score=46.97 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.7
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+.+++|+|.|+ |++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 35678999985 89999999999999986 7887764
No 241
>PLN00106 malate dehydrogenase
Probab=92.42 E-value=0.32 Score=53.40 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.8
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcC-CeEEEEeCCc
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GV-g~ItLVD~D~ 398 (715)
...||+|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3569999999 9999999999998887 6899999855
No 242
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.38 Score=51.95 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
.+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999996 799998753
No 243
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.64 Score=48.44 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.3
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++|+|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4567899985 8999999999999996 46666653
No 244
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.40 E-value=0.52 Score=50.14 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=30.2
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ ||+|..+|+.|++.|. ++.+++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 367889999985 8999999999999997 6777765
No 245
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.35 E-value=0.81 Score=52.95 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.||.|||+|..|+.+|..|++.|. .+++.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence 479999999999999999999997 7888887
No 246
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.74 Score=46.18 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=30.9
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++++|+|.|+ |++|..+++.|+..|.+ ++++|.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 366889999986 99999999999999975 8888774
No 247
>PRK05855 short chain dehydrogenase; Validated
Probab=92.27 E-value=0.62 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 359 q~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
...+++.+++|+|+ ||+|..+|+.|+..|.. +.+++.
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35678889999986 99999999999999975 777764
No 248
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.22 E-value=0.71 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 57889999986 7799999999999997 6777665
No 249
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.20 E-value=0.57 Score=50.95 Aligned_cols=30 Identities=40% Similarity=0.589 Sum_probs=26.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEe
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD 395 (715)
.||+|+|+|++||..+..|++.| ..++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 38999999999999999999999 7776643
No 250
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.17 E-value=0.87 Score=48.66 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.7
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++|+|.|+ |++|+.+++.|+..|. ++++++.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 578999985 9999999999999996 45555443
No 251
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.16 E-value=1.2 Score=50.21 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=63.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+...+|+|+|+|.+|..+++.|.+.|. .++++|.|. .+.+. +++..+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~----------------------~~~~~----~~~~~~~~~~-- 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP----------------------ERAEE----LAEELPNTLV-- 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH----------------------HHHHH----HHHHCCCCeE--
Confidence 567899999999999999999999886 578887631 12222 2222334432
Q ss_pred EecccCCCCCCCCCccccccccchhhH-HHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRL-TDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l-~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp 501 (715)
+..+ + .+.+.+ +.-++++|.|+.++++.+.-.++..+|+..+.+
T Consensus 280 i~gd------~----------~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 280 LHGD------G----------TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred EECC------C----------CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 2211 1 133334 234678999999999888777777788877654
No 252
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.75 Score=46.60 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=26.7
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
+++++|+|.|+ |++|..+|+.|+..|.. ++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 56789999985 99999999999999975 4443
No 253
>PRK08303 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.87 Score=49.02 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=30.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++++.++|.|+ +|+|..+|+.|++.|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 367889999987 5899999999999996 67787764
No 254
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.11 E-value=0.89 Score=46.73 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=29.8
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+.+++|+|.|+ |++|..+|+.|++.|. ++.++|.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 66789999985 9999999999999996 57777654
No 255
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.10 E-value=0.57 Score=50.43 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhh-CCCcEEEEEec
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~i-nP~v~v~~~~~ 444 (715)
||.|||+|-.|..+|++|++.|. +++++|.+.-....+ .+. |..-+....+.+... .+++-+..++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEE---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHC---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 79999999999999999999995 588888753211111 111 222222222333322 34555555431
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh-HHHHHHHHHHHhcCCeEEEee
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR-ESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~-esR~li~~~~~~~~kp~I~aa 506 (715)
. + ......+.+...+..-++||+++-.. +.-..+...+...|+-++++.
T Consensus 70 ~-----~--------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 70 G-----E--------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred C-----c--------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 0 0 01111133344455668999985433 333335577788899888863
No 256
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.78 Score=47.04 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++++|.|+ |++|..+++.|+.-|.. +++++.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 468899999985 89999999999999974 888774
No 257
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.66 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=30.9
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++++|+|+|+ |++|..+++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 477899999998 9999999999999995 57777653
No 258
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.00 E-value=0.73 Score=50.76 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=58.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH--------hcC--CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhC
Q 005071 365 RKCLLLGAGTLGCQVARMLMA--------WGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~--------~GV--g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~in 434 (715)
.+|.|+|+|++|+.+++.|.. .|+ +=..+.|.+. .+|..+.+ .-.+ +.+..++-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gi---d~~~---l~~~~~~~~ 67 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDI---DLRE---AKEVKENFG 67 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCC---ChHH---HHHhhhccC
Confidence 589999999999999999987 563 3344556431 23333322 1122 222222211
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccchhhHHHhh--ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI--LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 435 P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li--~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
. + ..+.... ...+ -...+++ .++||||+++.....+.+ -..+.+.|+++|.+
T Consensus 68 ~-~--~~~~~~~--------------~~~~-~~~~ell~~~~~DVvVd~t~~~~a~~~-~~~al~~G~~VVta 121 (336)
T PRK08374 68 K-L--SNWGNDY--------------EVYN-FSPEEIVEEIDADIVVDVTNDKNAHEW-HLEALKEGKSVVTS 121 (336)
T ss_pred c-h--hhccccc--------------cccC-CCHHHHHhcCCCCEEEECCCcHHHHHH-HHHHHhhCCcEEEC
Confidence 1 0 1110000 0000 1234455 369999999976555544 44567899999976
No 259
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.98 E-value=0.93 Score=41.19 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=55.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhc--CCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 366 KCLLLGAGTLGCQVARMLMAWG--VRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~G--Vg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
||+|||+|..|...+..+.+.+ +.-..++|. ...+++.+++. + ++. .+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------------------~~~~~~~~~~~----~-~~~--~~~ 52 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------------------DPERAEAFAEK----Y-GIP--VYT 52 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------------------SHHHHHHHHHH----T-TSE--EES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------------------CHHHHHHHHHH----h-ccc--chh
Confidence 7999999999999999999883 322234444 22344443222 2 222 222
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhc--cCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~esR~li~~~~~~~~kp~I 503 (715)
+++++++ +.|+|+.+|-+ ..+.-+...|.+.|++++
T Consensus 53 -----------------------~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 53 -----------------------DLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp -----------------------SHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred -----------------------HHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 2445555 78999999987 557777788888998655
No 260
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.95 E-value=1.1 Score=45.30 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.5
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|.| .|+||..+++.|+..|. ++++++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 56999999999999997 78888753
No 261
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.89 E-value=0.46 Score=52.20 Aligned_cols=93 Identities=30% Similarity=0.322 Sum_probs=60.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
..+.++++.|+|.|.+|..||+.+.+-|. +|...|. .|+ ++.+. .+ ..
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~--------~~~-------------~~~~~---~~-------~~ 189 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDR--------SPN-------------PEAEK---EL-------GA 189 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECC--------CCC-------------hHHHh---hc-------Cc
Confidence 46899999999999999999999994442 3333232 111 11111 00 01
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEe-CCChHHHHHHHHHHHhcCC---eEEEeeeC
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL-TDTRESRWLPTLLCANTNK---ITITAALG 508 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~-tDs~esR~li~~~~~~~~k---p~I~aalG 508 (715)
.. .+ ++++++++|+|... -.+.++|.++|.--.+.-| .+||.+-|
T Consensus 190 ~y---------------------~~---l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 190 RY---------------------VD---LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred ee---------------------cc---HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 11 11 78899999998774 4789999999986665444 46676543
No 262
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.98 Score=46.34 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.6
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999997 8999999999999995 6888765
No 263
>PRK06270 homoserine dehydrogenase; Provisional
Probab=91.84 E-value=0.84 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHh
Q 005071 365 RKCLLLGAGTLGCQVARMLMAW 386 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~ 386 (715)
.||.|+|+|++|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999865
No 264
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.82 E-value=0.75 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|.|+ |.+|+.+++.|++.|. +++.+|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 8899999999999994 57777664
No 265
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.79 E-value=0.95 Score=46.92 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.8
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 467889999985 79999999999999975 666553
No 266
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.79 E-value=0.61 Score=55.65 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=31.4
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-.+++|+|||+|..|..+|..|++.|.. ++++|.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 3578999999999999999999999974 9999864
No 267
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.76 E-value=0.68 Score=51.03 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=61.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
+|+|+|+|.+|.-++..+...|..+|+++|.+ ..|.+.|++... ..+.....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g-----~~~~~~~~- 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGG-----ADVVVNPS- 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCC-----CeEeecCc-
Confidence 89999999999999999999999999999862 123333333221 11111110
Q ss_pred cCCCCCCCCCccccccccchhhHHHhh--ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLI--LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li--~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.........++- .++|+||+|+.+..+......+++..|..++-+
T Consensus 223 ---------------~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 223 ---------------EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ---------------cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 001122222333 359999999998776666666777777655543
No 268
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.74 E-value=0.82 Score=46.90 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.4
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++++|+|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 477899999985 7999999999999997 78888874
No 269
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.74 E-value=0.73 Score=47.47 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.5
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++|+|.| .|++|..+++.|++.|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 5799998 58999999999999996 5666553
No 270
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=91.73 E-value=1 Score=47.44 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcC---CeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~ 396 (715)
.+.||.|||+|.+|+.+++.|...|+ .+|.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 34689999999999999999999873 23555443
No 271
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.72 E-value=0.74 Score=47.25 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=28.3
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++++|.| .|++|..+|+.|++.|. ++.++|.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 5788999998 47899999999999996 6666554
No 272
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.72 E-value=1.1 Score=46.38 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.0
Q ss_pred hccCeEEEEcCC-hHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|.|++ ++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 678899999865 799999999999997 88887763
No 273
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.71 E-value=0.9 Score=46.82 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.1
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++|+|.|+ |++|..+|+.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 478899999985 79999999999999974 556555
No 274
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.69 E-value=1.3 Score=48.07 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=30.9
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|++++..+|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999999999999988775
No 275
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=91.68 E-value=1.3 Score=47.98 Aligned_cols=107 Identities=14% Similarity=0.228 Sum_probs=64.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCcccccCC--CcCCCCCcchhcC---CCCcHHHHHHHHHHhhCCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSNP--LRQSLYTLDDCLN---GGDFKAMAAVKSLERIFPAV 437 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~Ve~sNl--~RQ~L~~~~Di~~---~G~~KAeaaa~~L~~inP~v 437 (715)
.||.|||+||-||.++..|.+.|+. .+..+|.|.-.+... .+-.++..+.... +|.+. ..++.
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~--~g~~~-------- 70 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPE--VGRKA-------- 70 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHH--HHHHH--------
Confidence 3799999999999999999999986 456677776433332 1222222211100 01111 11110
Q ss_pred EEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHhcCCeEEEe
Q 005071 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.....+.+.+.++++|.||.+ |.+-.+.. +.++++.++++++..
T Consensus 71 -----------------------a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~-ia~~a~e~g~~~~~v 120 (304)
T cd02201 71 -----------------------AEESREEIKEALEGADMVFITAGMGGGTGTGAAPV-IAKIAKEMGALTVAV 120 (304)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHH-HHHHHHHcCCCEEEE
Confidence 112334566778889998876 44544555 678889998876654
No 276
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.82 Score=46.78 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.3
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.| .|++|..+++.|++.|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 36788999998 67999999999999996 7888876
No 277
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.66 E-value=0.27 Score=46.84 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=22.1
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGV 388 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GV 388 (715)
-...||.|||+|-+|..+++.|.+.|.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC
Confidence 345689999999999999999999995
No 278
>PRK13529 malate dehydrogenase; Provisional
Probab=91.65 E-value=0.91 Score=53.11 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=72.4
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHH----hcC------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHH
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMA----WGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~----~GV------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~ 429 (715)
.+|+..||+++|||+.|..+|+.|+. .|+ ++|.++|..=+=.. .| .|+ ...|..-|..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~--~r------~~l---~~~k~~fa~~- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTD--DM------PDL---LDFQKPYARK- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeC--CC------Ccc---hHHHHHHhhh-
Confidence 57889999999999999999999998 599 69999998543111 11 122 2233333222
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccC--CEEEEeCCC--hHHHHHHHHHHHhcCCeEEEe
Q 005071 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs--~esR~li~~~~~~~~kp~I~a 505 (715)
.+.+. .... ......+.+.++.. |++|-++-- .=+.-++..++.....|+|.+
T Consensus 359 ----~~~~~--~~~~-----------------~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 359 ----REELA--DWDT-----------------EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred ----ccccc--cccc-----------------ccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 11110 0000 01223577888877 999998862 335677888888888898876
No 279
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.61 E-value=0.78 Score=46.13 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=24.8
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCe
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ 390 (715)
++.++|+|+| .|++|..+++.|+..|..-
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 4567899998 5999999999999999854
No 280
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.58 E-value=0.46 Score=51.86 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.7
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CeEEEEeCC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNG 397 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItLVD~D 397 (715)
||.|||+ |.+|+.+|..|+.-|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999999887 689999985
No 281
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.56 E-value=1 Score=46.42 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=31.4
Q ss_pred hhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
++++++|+|.|++ |+|..+|+.|+..|. ++.+++...
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~ 41 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSP 41 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCc
Confidence 3577899999994 799999999999996 788887753
No 282
>PRK12746 short chain dehydrogenase; Provisional
Probab=91.56 E-value=0.91 Score=46.42 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=26.3
Q ss_pred HhhccCeEEEEc-CChHHHHHHHHHHHhcCCe
Q 005071 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (715)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ 390 (715)
+++++++|+|.| .|++|..+|+.|+..|..-
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~v 33 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGALV 33 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 346788999998 6899999999999998643
No 283
>PRK06046 alanine dehydrogenase; Validated
Probab=91.56 E-value=0.78 Score=50.16 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=54.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
..+|.|+|+|+.|...++.|.. -+++++.++|. ...|++.+++.+++.++ +++..+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~~ 185 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTVA 185 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 6799999999999999999984 57889988876 34466777777765432 333332
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
. +.+++++ +|+|+.||=+.
T Consensus 186 ~-----------------------~~~~~l~-aDiVv~aTps~ 204 (326)
T PRK06046 186 E-----------------------DIEEACD-CDILVTTTPSR 204 (326)
T ss_pred C-----------------------CHHHHhh-CCEEEEecCCC
Confidence 2 2344555 99999999763
No 284
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.49 E-value=0.91 Score=46.42 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=29.9
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999996 9999999999999997 5777765
No 285
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.48 E-value=1.2 Score=45.37 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=25.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~It 392 (715)
++++.|+|.|+ |++|..+|+.|++.|...+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 35678899985 99999999999999975433
No 286
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.48 E-value=1.2 Score=45.36 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=28.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999996 9999999999999996 4555443
No 287
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=91.48 E-value=0.99 Score=47.04 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.7
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
..|+++||+|.|.|.+|..+|+.|...|.+-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46789999999999999999999999998888898874
No 288
>PRK06128 oxidoreductase; Provisional
Probab=91.39 E-value=1 Score=47.88 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=28.9
Q ss_pred HHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 359 q~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
..+|++++|+|.|+ ||+|..+|+.|++.|. ++.++
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~ 85 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGA-DIALN 85 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEE
Confidence 34678899999985 8999999999999997 44444
No 289
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.38 E-value=0.45 Score=55.49 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=31.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..|.+++|.|||+|.+|..+|+.|.+.|. ++..+|.
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 171 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP 171 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 36899999999999999999999999997 6676664
No 290
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.30 E-value=1.1 Score=47.56 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=58.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 365 RKCLLLG-AGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
.||+|+| +|..|..+++.+.. -++.=.-++|.. |.... ..++ |. +..+.+ ..+..+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-----~~~~~----~~~~---~~---------~~~~~~-~gv~~~ 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-----GSSLQ----GTDA---GE---------LAGIGK-VGVPVT 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Ccccc----CCCH---HH---------hcCcCc-CCceee
Confidence 3899999 59999999999986 466666666621 11100 0111 10 111000 001111
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEeeeCC
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~aalG~ 509 (715)
.+++++....|+||++| +++.-.-....|.++|+++|.+..|+
T Consensus 60 -----------------------~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 60 -----------------------DDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred -----------------------CCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 12233335689999999 55666667788889999988765455
No 291
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.28 E-value=2.8 Score=42.63 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=57.9
Q ss_pred EEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005071 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (715)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~~ 445 (715)
|+|+|+ |.+|..|++.|...|.. ++.+ .|. + ....++.|+. .++++...+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l----------~R~-------------~-~~~~~~~l~~--~g~~vv~~d-- 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL----------VRD-------------P-SSDRAQQLQA--LGAEVVEAD-- 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE----------ESS-------------S-HHHHHHHHHH--TTTEEEES---
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE----------Eec-------------c-chhhhhhhhc--ccceEeecc--
Confidence 789997 99999999999996644 3331 111 1 1112333444 355554322
Q ss_pred cCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC---hHH--HHHHHHHHHhcCCeEE
Q 005071 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT---RES--RWLPTLLCANTNKITI 503 (715)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs---~es--R~li~~~~~~~~kp~I 503 (715)
..+.+.+.+.++++|.||.++.. .+. ..-+-++|.+.|+..+
T Consensus 52 ----------------~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 52 ----------------YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp ----------------TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred ----------------cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 24678889999999999999993 332 2345667777776544
No 292
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.25 E-value=1.1 Score=49.66 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+|.|||+|.+|..+|+.|.+.|. .++++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 479999999999999999999996 5566665
No 293
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.25 E-value=0.88 Score=51.20 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=52.6
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCC------eEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhC-C
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVR------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF-P 435 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg------~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~in-P 435 (715)
-.||.|+|+ |.+|+.+|..|+.-|+- .|+|+|.|. .+.|++.-+.-|..-. |
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~--------------------~~~~a~g~a~DL~d~a~~ 103 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER--------------------SKEALEGVAMELEDSLYP 103 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc--------------------cchhhhHHHHHHHHhhhh
Confidence 469999999 99999999999999984 477776643 3445665565565544 4
Q ss_pred CcE-EEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC
Q 005071 436 AVA-AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (715)
Q Consensus 436 ~v~-v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (715)
... +... .. -.+-++++|+||.+...
T Consensus 104 ~~~~v~i~----------------------~~-~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 104 LLREVSIG----------------------ID-PYEVFEDADWALLIGAK 130 (387)
T ss_pred hcCceEEe----------------------cC-CHHHhCCCCEEEECCCC
Confidence 321 1111 11 13456899999997765
No 294
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.16 E-value=0.86 Score=47.13 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++++|.|+ ||+|..+|+.|++.|. ++.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56889999986 6899999999999996 57777753
No 295
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.13 E-value=0.91 Score=48.41 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+|.|||+|.+|..+|+.|++.|. +++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999995 56777653
No 296
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.11 E-value=0.3 Score=50.51 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.7
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
..|+++||+|.|.|.+|..+|+.|...|.+.+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357899999999999999999999999999999999754
No 297
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.08 E-value=0.95 Score=52.45 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=59.3
Q ss_pred ccCeEEEEcCChHHHHHHHHHH-HhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhh--CCCcEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI--FPAVAA 439 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~i--nP~v~v 439 (715)
+.+||+|||+|..|+++|+.|+ ..|+ +++|+|..-.-. =+.|.-.- . -+++.....+.+.++ .+.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVa-P------dh~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVA-P------DHIHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCC-C------CCccHHHHHHHHHHHHhhCCeEE
Confidence 4679999999999999999876 4564 599999876554 23332211 1 123444444444443 355555
Q ss_pred EEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
.+ +..| |. .. .++++.+.+|.||.++...
T Consensus 109 ~g-nv~V---G~----------Dv---t~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHV---GV----------DL---KMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEe---cC----------cc---CHHHHHhcCCEEEEEcCCC
Confidence 42 2222 11 11 2345556899999999875
No 298
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.08 E-value=1.5 Score=49.76 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.||+|+|+|+.|..+|+.|.+.|. .+++.|..... +.....+.|.+. ++.+..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~---------------------~~~~~~~~l~~~--gi~~~~--- 53 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP---------------------ELLERQQELEQE--GITVKL--- 53 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch---------------------hhHHHHHHHHHc--CCEEEE---
Confidence 479999999999999999999996 78888864321 111112334433 344321
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~ 504 (715)
||. .+.+.....+.++|+||-...-.....++ ..+++.++|++.
T Consensus 54 -----g~~----------~~~~~~~~~~~~~d~vv~s~gi~~~~~~~-~~a~~~~i~v~~ 97 (459)
T PRK02705 54 -----GKP----------LELESFQPWLDQPDLVVVSPGIPWDHPTL-VELRERGIEVIG 97 (459)
T ss_pred -----CCc----------cchhhhhHHhhcCCEEEECCCCCCCCHHH-HHHHHcCCcEEE
Confidence 121 12223444567789888865544443333 345677888886
No 299
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=91.07 E-value=1.3 Score=49.17 Aligned_cols=109 Identities=15% Similarity=0.252 Sum_probs=65.4
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeE--EEEeCCcccc--cCCCcCCCCCcchhcC---CCCcHHHHHHHHHHhhCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKI--TLLDNGRVAM--SNPLRQSLYTLDDCLN---GGDFKAMAAVKSLERIFP 435 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~I--tLVD~D~Ve~--sNl~RQ~L~~~~Di~~---~G~~KAeaaa~~L~~inP 435 (715)
.+.+|.|||+||-||.++..|.+.|+... ..+|.|.-.+ +...+-.+...+--.. +|.+.. .++.
T Consensus 16 ~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~--G~~~------ 87 (349)
T TIGR00065 16 NKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEI--GRKA------ 87 (349)
T ss_pred cCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHH--HHHH------
Confidence 45689999999999999999999998755 4478776332 3222323332221100 011111 1100
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHhcCCeEEEe
Q 005071 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.....+.+.+.++++|.||.+ |.+-.+- ++.++++.++++++..
T Consensus 88 -------------------------aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~ap-via~~ake~~~l~vai 137 (349)
T TIGR00065 88 -------------------------AEESRDEIRKLLEGADMVFITAGMGGGTGTGAAP-VVAKIAKELGALTVAV 137 (349)
T ss_pred -------------------------HHHHHHHHHHHHhCCCEEEEEEeccCccchhHHH-HHHHHHHHcCCCEEEE
Confidence 112334566778899998875 3344444 6788888888877654
No 300
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.04 E-value=1.5 Score=49.29 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=33.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQ 407 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ 407 (715)
||.|||+|-+|..+|..|+..|. +++.+|.+.-....+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999996 688999865444445443
No 301
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.04 E-value=1.5 Score=46.99 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=29.8
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
-.+++++++|.|+ ||+|..+|+.|++.|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3577899999985 7899999999999997 5666664
No 302
>PRK08703 short chain dehydrogenase; Provisional
Probab=91.03 E-value=1.2 Score=45.22 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=29.8
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.|++++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVAR 38 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 367789999985 8999999999999996 5777765
No 303
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.02 E-value=2.1 Score=47.32 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=28.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.+|+|+|+||||...++...++| -+++.+|.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~ 198 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR 198 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC
Confidence 789999999999999999999999 78887775
No 304
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.01 E-value=1.2 Score=47.33 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=27.7
Q ss_pred ccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++|||.| +|.+|+.+++.|+..|. +++.++.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 357899999 59999999999999996 56555554
No 305
>PRK08324 short chain dehydrogenase; Validated
Probab=91.00 E-value=0.97 Score=54.24 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=29.6
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+.+++|+|.| .|++|..+|+.|+..|. +++++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 3567899999 59999999999999997 7888875
No 306
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.99 E-value=0.72 Score=57.51 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=58.2
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhC-CCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF-PAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~in-P~v~v~~ 441 (715)
.++||+|||+|..|..+|..|++.|. ++|++|... .+.=+.-|...+. -.+| +.+.+.+..+. -++++..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~---rlp~-~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEF---RLPN-QLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCC---cChH-HHHHHHHHHHHhhcCeEEE
Confidence 58999999999999999999999996 688888642 2333333433333 2334 23333333322 2455443
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhc-cCCEEEEeCCCh
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTR 485 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~ 485 (715)
-.. + |. ..+ ++++.+ ++|.||.+|...
T Consensus 376 n~~-v---G~----------dit---~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 376 NFV-V---GK----------TAT---LEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred eEE-e---cc----------EEe---HHHhccccCCEEEEeCCCC
Confidence 210 1 10 112 334444 699999999985
No 307
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.96 E-value=0.77 Score=48.41 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEEcC-ChHHHHHHHHHHHhc--C-CeEEEEeCCc
Q 005071 367 CLLLGA-GTLGCQVARMLMAWG--V-RKITLLDNGR 398 (715)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~G--V-g~ItLVD~D~ 398 (715)
|.|||+ |.+|+.+|..|+..| . .+|+|+|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999999 4 6899999643
No 308
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.95 E-value=1.3 Score=48.12 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.1
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
-++.||||.| +|.+|+.+++.|+..|. ++++++.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567899999 58899999999999996 4555444
No 309
>PLN02852 ferredoxin-NADP+ reductase
Probab=90.93 E-value=0.89 Score=52.67 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH--hcCCeEEEEeCCcccccCCCcC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA--WGVRKITLLDNGRVAMSNPLRQ 407 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~--~GVg~ItLVD~D~Ve~sNl~RQ 407 (715)
..+||+|||+|.-|.++|+.|++ .| .+++|+|.... +-.+.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEee
Confidence 46789999999999999999997 56 48999998764 4445563
No 310
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=90.93 E-value=1.2 Score=53.45 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=29.0
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
|++++|+|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 45688999985 8999999999999996 7888775
No 311
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=90.91 E-value=1.1 Score=48.75 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=58.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++++|+|+|.-|-.-++.++. .++++|.+.|. ...|++..++++++.. +++++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~ 172 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRP 172 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence 37899999999999998888875 36777777655 4558888888888743 344443
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
. ++.++.+.++|||+.+|-+.+
T Consensus 173 ~-----------------------~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 173 V-----------------------DNAEAALRDADTITSITNSDT 194 (301)
T ss_pred e-----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 3 345778899999999998754
No 312
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.90 E-value=1.5 Score=46.96 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=50.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
++.++++|-|| +|+|-++|+.|++-| .++.||-. -+.|-+.+++.|.+.+ .++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 56789999995 799999999999999 56666544 3458899999999988 88888
Q ss_pred EEeccc
Q 005071 441 GVVMAI 446 (715)
Q Consensus 441 ~~~~~I 446 (715)
.+..++
T Consensus 60 vi~~DL 65 (265)
T COG0300 60 VIPADL 65 (265)
T ss_pred EEECcC
Confidence 887665
No 313
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.87 E-value=1.1 Score=46.75 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.1
Q ss_pred hccCeEEEEcC---ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++.++|.|+ +|+|..+|+.|++.|. ++.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 56889999998 5999999999999996 5777654
No 314
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.87 E-value=1.2 Score=48.80 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.9
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.++||||+|||.+|-.....+-+.|..+|.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 5889999999999999999999999999999886
No 315
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.85 E-value=0.64 Score=50.04 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=61.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH---HHHHHHHHHhhCCCcEEEEE
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK---AMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K---Aeaaa~~L~~inP~v~v~~~ 442 (715)
+|.|||+|..|+.+|++|++.|. ++++.|.+.-...-+..+ |... .+.+++.+. .+++-+..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~--~~dvIi~~v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLS--APRVVWVMV 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcC--CCCEEEEEc
Confidence 69999999999999999999994 667777654221111110 1111 111122211 244444443
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEee
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~li~~~~~~~~kp~I~aa 506 (715)
+. . . ...-.+.+...+..-++||+++-.. .++.+. ..+...+..++.+.
T Consensus 68 p~----~--~--------~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~-~~~~~~g~~~vda~ 118 (298)
T TIGR00872 68 PH----G--I--------VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRY-KLLKEKGIHLLDCG 118 (298)
T ss_pred Cc----h--H--------HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHH-HHHHhcCCeEEecC
Confidence 21 0 0 1111234444456668999987663 344443 34567788888763
No 316
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.80 E-value=1.5 Score=44.45 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.8
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.++++|.|+ |++|..+++.|++-|. ++++++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999985 9999999999999997 7888776
No 317
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.77 E-value=0.75 Score=50.07 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=52.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
..++.|+|+|.-|-.-++.|+. .++.+|.+.|. ...|++..++++++ . ++.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 4589999999999999998876 67899999775 34588999999998 4 6666654
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
. +.++.++++|+|+.||-+.+
T Consensus 184 ~-----------------------~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 184 D-----------------------SAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp S-----------------------SHHHHHTTSSEEEE----SS
T ss_pred c-----------------------chhhhcccCCEEEEccCCCC
Confidence 3 35677899999999998754
No 318
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.75 E-value=1.8 Score=44.60 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.6
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEE
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItL 393 (715)
.+++++|+|.| .|++|..+|+.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46778999997 7799999999999999865544
No 319
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=90.75 E-value=1 Score=46.66 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.2
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
..+++++|+|.|+ ||+|.++|+.|+..|.. ++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 3477899999986 89999999999999974 5554
No 320
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.72 E-value=0.8 Score=47.62 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.5
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.|+ ||+|..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 56788999986 89999999999999964 666664
No 321
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.70 E-value=0.47 Score=51.81 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CeEEEEeCCc
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItLVD~D~ 398 (715)
||.|+|+ |.+|+.+|..|+.-|+ .+|.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 7999999 9999999999999887 5799999754
No 322
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.70 E-value=0.97 Score=50.97 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|+|+|++|-.+|+.|++.|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 68887753
No 323
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=90.67 E-value=1.3 Score=48.33 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=30.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++.+||+|.|+ |-+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999995 9999999999999984 67777753
No 324
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.66 E-value=1.8 Score=45.36 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.2
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++++|.| .|++|..+|+.|+..|. ++.+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5778999998 58999999999999997 68887764
No 325
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.62 E-value=1.3 Score=45.83 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=29.9
Q ss_pred HhhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEe
Q 005071 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 360 ~kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD 395 (715)
.+|++++|+|.|++ |+|..+|+.|+..|. ++.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 36889999999995 899999999999997 466655
No 326
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.59 E-value=1.9 Score=44.06 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=24.8
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD 395 (715)
+++|+|.|+ |++|..+++.|+..|.. +++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 457999986 89999999999999964 44443
No 327
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.58 E-value=1.2 Score=45.94 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.0
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++|+|.| .||+|..+++.|+..|. +++++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789987 78999999999999997 78887763
No 328
>PRK09072 short chain dehydrogenase; Provisional
Probab=90.54 E-value=1.1 Score=46.22 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=29.5
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.| .|++|..+++.|++.|. ++++++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 5678999998 59999999999999995 5888875
No 329
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.53 E-value=3.2 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+|+|.|+ |-+|+.+++.|+..|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 37999997 999999999999874246777764
No 330
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.49 E-value=0.77 Score=47.20 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=50.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEE
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v 439 (715)
++++++|+|.|+ ||+|..+++.|+..|. ++.+++.+.-+ +......+-.-|+. ....++.+.+.+.+.++.+++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~id~ 80 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLT--TAEGCAAVARAVLERLGGVDI 80 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCC--CHHHHHHHHHHHHHHcCCCCE
Confidence 477899999995 8999999999999997 58888876432 22222333345661 123345555566666655555
Q ss_pred EEEe
Q 005071 440 EGVV 443 (715)
Q Consensus 440 ~~~~ 443 (715)
-.+.
T Consensus 81 vi~~ 84 (260)
T PRK06523 81 LVHV 84 (260)
T ss_pred EEEC
Confidence 4443
No 331
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.44 E-value=0.98 Score=46.12 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=32.5
Q ss_pred HhhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
+.+++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 567899999997 67899999999999997 888888753
No 332
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.42 E-value=1.4 Score=45.24 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.5
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.++++++|+|.|+ |++|..+|+.|+..|. +++++|.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 3577889999986 8899999999999996 6777775
No 333
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.39 E-value=2.3 Score=43.99 Aligned_cols=92 Identities=24% Similarity=0.227 Sum_probs=60.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHH-HHHHHHHhhCCCcEEEEEe
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM-AAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAe-aaa~~L~~inP~v~v~~~~ 443 (715)
.+++|+|.|-+|+.+|+.|+.+| -++++-- | ..+|+. ++++.+. |. +++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs----------~------------r~~~~~~a~a~~l~---~~--i~~-- 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGS----------S------------RGPKALAAAAAALG---PL--ITG-- 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEec----------C------------CChhHHHHHHHhhc---cc--ccc--
Confidence 47899999999999999999999 3333310 0 233443 3333332 22 222
Q ss_pred cccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEeeeC
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITAALG 508 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~-~kp~I~aalG 508 (715)
-..++..+.+||||.+.=-....-.+..+.... +|.+|++...
T Consensus 52 ----------------------~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 52 ----------------------GSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred ----------------------CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 122455678999999997666666677776655 5999987543
No 334
>PLN02650 dihydroflavonol-4-reductase
Probab=90.39 E-value=1.6 Score=47.37 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.9
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++|||.|+ |.+|+++++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 3568999985 9999999999999996 5655554
No 335
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.37 E-value=1.2 Score=53.12 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.5
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
.++||+|||+|..|..+|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 58999999999999999999999997 589988653
No 336
>PRK08628 short chain dehydrogenase; Provisional
Probab=90.31 E-value=1.6 Score=44.80 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=28.5
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.|++++++|.| .|++|..+|+.|+..|.. +++++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 36788999998 578999999999999975 555544
No 337
>PRK08643 acetoin reductase; Validated
Probab=90.27 E-value=2.2 Score=43.69 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=26.4
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|.| .|++|..+++.|++.|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788886 67999999999999996 6777763
No 338
>PRK12862 malic enzyme; Reviewed
Probab=90.26 E-value=0.77 Score=55.84 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=35.9
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCc
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~ 398 (715)
++|+..||++.|+|+.|..+|+.|+..|+. +|.++|..=
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 229 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 229 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 678899999999999999999999999995 999999744
No 339
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.24 E-value=1.3 Score=48.98 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=61.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEE-EEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKIT-LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~It-LVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
.||+|+|+ |.+|..+++.|...-.-+++ +++... .. |+. +.+.+|.+....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~--------~~~~~~~l~~~~- 53 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKP--------VSEVHPHLRGLV- 53 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCC--------hHHhCccccccC-
Confidence 37999999 99999999999976334444 556531 11 332 122233222100
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe--eeCCc
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFD 510 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a--alG~~ 510 (715)
...+ ...+.+++.+++|+||.|+.+..++-+...+ .+.|+.+|+. +..++
T Consensus 54 ~~~~-----------------~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 54 DLNL-----------------EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSADFRLK 105 (346)
T ss_pred Ccee-----------------ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCChhhhcC
Confidence 0000 1112234446899999999998888777765 4578999975 35554
No 340
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=90.23 E-value=1.3 Score=46.42 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEEcCChHHHHHHHHHHHh--cCCeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMAW--GVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~--GVg~ItLVD~ 396 (715)
+|.|||||++|..+.+.+-.- ++.-..+.|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~ 34 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR 34 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecC
Confidence 799999999999988866532 2444555454
No 341
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.22 E-value=0.36 Score=53.32 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=34.0
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.|.+++|||||+|-.|..+|++|...|+++|+++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4789999999999999999999999999999997553
No 342
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.20 E-value=1.6 Score=49.90 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=26.5
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|+| +|.+|..+|+.|...|. +++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 799997 89999999999999995 6777775
No 343
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.15 E-value=1.4 Score=45.24 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=28.2
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEe
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD 395 (715)
++.+++|+|+| .|++|..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 46789999997 679999999999999964 55554
No 344
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.12 E-value=1.2 Score=51.13 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=30.6
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+.+|+|||+|..|..+|..|++.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 578999999999999999999999974 8888864
No 345
>PRK06720 hypothetical protein; Provisional
Probab=90.11 E-value=1.6 Score=43.31 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=29.6
Q ss_pred hccCeEEEEcCC-hHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++.++|.|++ |+|..+++.|+..| -++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 678899999975 69999999999999 568887764
No 346
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.11 E-value=0.32 Score=54.71 Aligned_cols=40 Identities=33% Similarity=0.538 Sum_probs=37.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCcc
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRV 399 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~V 399 (715)
++|+..||++.|+|+-|+.+++.|...|++ +|.++|.-=+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 689999999999999999999999999998 9999998543
No 347
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.07 E-value=0.36 Score=56.31 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.2
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|+|+||+|..++..|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8999864
No 348
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=90.06 E-value=1.7 Score=44.29 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4688998 58999999999999997 5777764
No 349
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.02 E-value=0.6 Score=49.78 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
||.|||+|.+|+.+|+.|++.|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999995 67777764
No 350
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.01 E-value=1.3 Score=46.51 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.5
Q ss_pred hhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++.++|.|+| |+|..+|+.|++.|. ++.++|.+
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~ 41 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN 41 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecc
Confidence 3678899999996 799999999999996 57777653
No 351
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.97 E-value=2.3 Score=46.31 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.2
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3689999999999999999999999988888765
No 352
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.97 E-value=2 Score=51.12 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=61.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
..+|+|+|+|-.|..+++.|.+.|+ +++++|.|.- +++.++ + .+.++ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~~----~--~g~~v--~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD----------------------HIETLR----K--FGMKV--FY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHHH----h--cCCeE--EE
Confidence 5799999999999999999999997 5788888541 233322 2 12332 32
Q ss_pred cccCCCCCCCCCccccccccchhhHH-HhhccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLT-DLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~-~li~~~DvV~~~tDs~esR~li~~~~~~~~ 499 (715)
.+. .+.+-++ .=++++|+|+.++|+.+.-..+...++++.
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 449 GDA----------------TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred EeC----------------CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 211 1233333 235789999999999998888888888764
No 353
>PRK07677 short chain dehydrogenase; Provisional
Probab=89.92 E-value=1.6 Score=44.86 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=27.9
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367899985 6799999999999998 78888764
No 354
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.83 E-value=1.1 Score=52.45 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=31.5
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-.+++|+|||+|..|-.+|..|.+.|. +++++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999998 59999964
No 355
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.82 E-value=2 Score=44.11 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.8
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+|+|.|+ |++|..+|+.|+.-|. ++++++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 6899985 8999999999999996 5777765
No 356
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.81 E-value=0.52 Score=52.29 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.6
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHh-cCCeEEEEeCCccccc
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAW-GVRKITLLDNGRVAMS 402 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~-GVg~ItLVD~D~Ve~s 402 (715)
+...|+|||+|-+|+.+|..|++. |..+++++|.+.+-..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 456799999999999999999985 8879999999876543
No 357
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.76 E-value=0.47 Score=51.28 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.5
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+.++||+|+|+|.+|..++..|.+.|. +++++|..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578999999999999999999999997 89998773
No 358
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.74 E-value=1.4 Score=51.85 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=70.2
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHH-----hcC------CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHH
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMA-----WGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~-----~GV------g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~ 428 (715)
.+|+..||+++|||+.|..+|+.|+. .|+ ++|.++|..=+=..+ |. +++ ...|..-|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r~-----~~l---~~~k~~fa~~ 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--RK-----DSL---QPFKKPFAHD 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--CC-----ccC---hHHHHHHHhh
Confidence 58889999999999999999999998 477 799999986432111 11 002 2234333321
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhcc--CCEEEEeCC--ChHHHHHHHHHHHhcCCeEEE
Q 005071 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS--HDVIFLLTD--TRESRWLPTLLCANTNKITIT 504 (715)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~--~DvV~~~tD--s~esR~li~~~~~~~~kp~I~ 504 (715)
. . ....+.+.++. .|++|-++- ..=+.-++..++.....|+|.
T Consensus 387 -----~--------~--------------------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 387 -----H--------E--------------------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred -----c--------c--------------------cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 0 0 11356777777 899998885 333566788888888889887
Q ss_pred e
Q 005071 505 A 505 (715)
Q Consensus 505 a 505 (715)
+
T Consensus 434 a 434 (581)
T PLN03129 434 A 434 (581)
T ss_pred E
Confidence 6
No 359
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.72 E-value=2 Score=44.62 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 36899985 8999999999999997 4666654
No 360
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.70 E-value=1.4 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=29.3
Q ss_pred hhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++++|.|++ |+|..+|+.|++.|.. +.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence 3678899999985 9999999999999964 666654
No 361
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.69 E-value=2.6 Score=37.65 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=56.9
Q ss_pred ccCeEEEEcCChHHHHHHH-HHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVAR-MLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~-~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
+..+|+|+|+|++|..++. .....|.+-..++|.|. +.+ |+. +.+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~---G~~-----------------i~g 47 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKI---GKE-----------------IGG 47 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTT---TSE-----------------ETT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------Ccc---CcE-----------------ECC
Confidence 4578999999999998864 44567888888888632 223 331 111
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCC-eEEEe
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNK-ITITA 505 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~k-p~I~a 505 (715)
++ + ..+.+.+.+.+ +.|+.+.++-...++-...+++. .|+ .+++.
T Consensus 48 ip---------V--------~~~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nf 93 (96)
T PF02629_consen 48 IP---------V--------YGSMDELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNF 93 (96)
T ss_dssp EE---------E--------ESSHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEE
T ss_pred EE---------e--------eccHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 11 1 11455666666 59999999977777777776665 554 44443
No 362
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.66 E-value=1.3 Score=45.85 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=30.3
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++++|+|.|+ ||+|..+|+.|++.|. ++.++|.+
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 7899999999999996 57777764
No 363
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=89.64 E-value=1.6 Score=47.89 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=53.4
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..+++.|||+|..|-.-++.|.. ..+.+|.+.|. ...|++..++++++. ++++..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~--g~~v~~ 182 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDY--EVPVRA 182 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhh--CCcEEE
Confidence 36789999999999998877754 33566666554 455778888888754 233333
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
. .+.++.++++|+|+.||-+.
T Consensus 183 ~-----------------------~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 183 A-----------------------TDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred e-----------------------CCHHHHhccCCEEEEecCCC
Confidence 2 23456778999999999763
No 364
>PRK12827 short chain dehydrogenase; Provisional
Probab=89.64 E-value=1.8 Score=43.77 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.| .|++|..+|+.|+..|. ++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcC
Confidence 5678999998 58999999999999996 4677663
No 365
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.63 E-value=0.66 Score=50.83 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.5
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcC-C-----eEEEEeC
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GV-g-----~ItLVD~ 396 (715)
-.||.|+|+ |.+|+.+|..|+.-|+ + +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 9999999999999887 4 6999986
No 366
>PRK07201 short chain dehydrogenase; Provisional
Probab=89.57 E-value=1.7 Score=51.36 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.7
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..+++++++|.|+ ||+|..+++.|++.|. ++.+++.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3677889999985 8899999999999996 6777764
No 367
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.51 E-value=0.6 Score=48.68 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.8
Q ss_pred hhHHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 357 ~gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+.|.++++++++|.|+ ||+|..+|+.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 5689999999999986 7899999999999996 67777764
No 368
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.47 E-value=2.8 Score=43.51 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=27.1
Q ss_pred ccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..++|+|.| .||+|..+|+.|+..|--++++++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 345788887 6899999999999997457777765
No 369
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.46 E-value=0.15 Score=61.63 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
+||.|||+|+.|+.+|..++..|. .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 589999999999999999999995 899999753
No 370
>PRK07775 short chain dehydrogenase; Provisional
Probab=89.46 E-value=2.6 Score=44.05 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
...+.|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r 42 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGAR 42 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4567899998 49999999999999997 5666554
No 371
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.40 E-value=2.2 Score=43.89 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.3
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++++++|.| .||+|..+|+.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999997 66999999999999996 6667665
No 372
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.37 E-value=1.4 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.7
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|||.|+ |.+|+.+++.|+..|. +++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEec
Confidence 46789999996 8999999999999996 5666665
No 373
>PRK07791 short chain dehydrogenase; Provisional
Probab=89.20 E-value=1.8 Score=45.80 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.2
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++++|.| .||+|..+|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence 46788999997 57999999999999996 5666665
No 374
>PRK13018 cell division protein FtsZ; Provisional
Probab=89.18 E-value=2.9 Score=46.99 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=33.4
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCc
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~ 398 (715)
+...+.+|.|||+||-||.++..|.+.|+. .+..++.|.
T Consensus 24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 345678999999999999999999999986 567778777
No 375
>PRK07589 ornithine cyclodeaminase; Validated
Probab=89.12 E-value=1.7 Score=48.27 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=55.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
..+++|+|+|..|-.-++.+.. ..+.+|.+++. ...|+++.++++++ +++++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~--~~~~v~~~ 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAG--PGLRIVAC 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHh--cCCcEEEe
Confidence 5789999999999888776653 35777777644 45578888888876 34444432
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChH
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (715)
++.++.++++|+|+.||-+.+
T Consensus 185 -----------------------~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 185 -----------------------RSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred -----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 246778899999999997643
No 376
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.05 E-value=3.4 Score=44.39 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.2
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|.++++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3789999999999999999999999987877764
No 377
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=89.03 E-value=1.6 Score=44.99 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.7
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+|+|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 6899985 7899999999999997 5777765
No 378
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.02 E-value=1.9 Score=44.34 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=30.5
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++.+++++|.| .|++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCC
Confidence 46789999997 778999999999999974 7887753
No 379
>PRK09330 cell division protein FtsZ; Validated
Probab=89.00 E-value=3 Score=46.89 Aligned_cols=112 Identities=10% Similarity=0.146 Sum_probs=68.8
Q ss_pred HhhccCeEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCc--ccccCCCcCCCCCcchhc---CCCCcHHHHHHHHHHh
Q 005071 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR--VAMSNPLRQSLYTLDDCL---NGGDFKAMAAVKSLER 432 (715)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~--Ve~sNl~RQ~L~~~~Di~---~~G~~KAeaaa~~L~~ 432 (715)
..-...+|-|||+||-||+++..|.+.|+. .+..++.|. ++.+...+-++...+--. .+|.|. ..++.
T Consensus 9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe--~G~~a--- 83 (384)
T PRK09330 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE--VGRKA--- 83 (384)
T ss_pred ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH--HHHHH---
Confidence 344567999999999999999999999986 455556655 333333333332221110 011121 11111
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCC------ChHHHHHHHHHHHhcCCeEEEe
Q 005071 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD------TRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 433 inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD------s~esR~li~~~~~~~~kp~I~a 505 (715)
...+.+.+.+.++++|+||.+.. +-.+- ++.++++.+++++|..
T Consensus 84 ----------------------------aee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaV 133 (384)
T PRK09330 84 ----------------------------AEESREEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAV 133 (384)
T ss_pred ----------------------------HHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEE
Confidence 11234566777899999998643 44455 7889999999887764
No 380
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.97 E-value=0.55 Score=50.50 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.||.|||+|.+|+.+|..|+..|.+++.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999999669999997
No 381
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.93 E-value=1.6 Score=47.24 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=27.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999985 889999999999999777777764
No 382
>PRK07985 oxidoreductase; Provisional
Probab=88.90 E-value=2.2 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=28.6
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD 395 (715)
++++++|+|.|+ ||+|..+|+.|++.|. ++.+++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~ 80 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISY 80 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEec
Confidence 478889999985 8999999999999996 455654
No 383
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.88 E-value=1.2 Score=48.82 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.7
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----eEEEEeC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GV-g-----~ItLVD~ 396 (715)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999999 9999999999999987 5 6888876
No 384
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=88.88 E-value=0.63 Score=49.30 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAM 401 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~ 401 (715)
.|+|||+|-.|+.+|..|++.|. +++|+|.+.+.-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999997 999999996543
No 385
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.88 E-value=0.53 Score=52.26 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
.+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999995 799999986
No 386
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=88.86 E-value=0.54 Score=51.22 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.5
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcc
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~V 399 (715)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999995 7999998764
No 387
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.85 E-value=1.1 Score=49.23 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=66.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.+|.|+|+|.=|+.+|..|++.| ..+++...| +++ .+.|++- ..+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~---------------~~~-----------~~~i~~~--~~N~~yLp- 51 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRD---------------EEI-----------VAEINET--RENPKYLP- 51 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecC---------------HHH-----------HHHHHhc--CcCccccC-
Confidence 58999999999999999999999 444443332 111 0112211 01111111
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHH--HhcCCeEEEeeeCCc
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC--ANTNKITITAALGFD 510 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~--~~~~kp~I~aalG~~ 510 (715)
.|.-|. ......++.+.++++|+|+.++=+...|-.+..+. ...+.++|+++-|+.
T Consensus 52 ~i~lp~----------~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 52 GILLPP----------NLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred CccCCc----------ccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 111110 12345677888899999999999999888877763 356677888876664
No 388
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=88.84 E-value=2.1 Score=46.12 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.8
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++|+|.|+ +|+|..+|+.|++.|.-++.+++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678999987 6899999999999996678777653
No 389
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.82 E-value=0.19 Score=60.75 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
++|.|||+|+.|+.+|..++..|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999995 788989753
No 390
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.72 E-value=2.1 Score=46.26 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=63.0
Q ss_pred hhHHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCC
Q 005071 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (715)
Q Consensus 357 ~gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP 435 (715)
+..+++.++.|+|-|| .|+|-.+|+.|++.|.+-+.++= -..+-+..++.+++..|
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar-----------------------~~rrl~~v~~~l~~~~~ 61 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR-----------------------RARRLERVAEELRKLGS 61 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh-----------------------hhhhHHHHHHHHHHhCC
Confidence 4568999999999996 59999999999999976555421 12345666677777766
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEe
Q 005071 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (715)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (715)
.-++..+..++ +..++...-.+.+...+.+.|+.|+-
T Consensus 62 ~~~v~~~~~Dv---------s~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 62 LEKVLVLQLDV---------SDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred cCccEEEeCcc---------CCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 55677777665 12233333334445566778888763
No 391
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.72 E-value=0.58 Score=50.01 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
++|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999997 799998743
No 392
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.69 E-value=1.8 Score=48.33 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=27.4
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+..+|+|+|+ |.+|..+++.|+..|. +++.++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 4568999986 9999999999999995 5666664
No 393
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.68 E-value=0.48 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.4
Q ss_pred hhccCeEEEEcCCh-HHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGg-LGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|+|+|+ +|.++|..|...|. ++|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 47899999999999 99999999999998 9999874
No 394
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.68 E-value=3.5 Score=44.30 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=25.4
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|.|+ |-+|+.+++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 7999995 9999999999999995 5666654
No 395
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=88.64 E-value=1.9 Score=45.16 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=25.7
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
+|+|.|+ |.+|..+++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899986 9999999999999873 46777764
No 396
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.63 E-value=2.8 Score=42.13 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=26.5
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItL 393 (715)
+++++|+|.|+ |++|..+++.|++.|..-+.+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999985 899999999999999764344
No 397
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=88.61 E-value=0.65 Score=50.59 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=36.2
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNP 404 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl 404 (715)
...+|+|||+|-+|+.+|..|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999998 999999999855333
No 398
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=88.61 E-value=2.7 Score=42.79 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.9
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeE
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~I 391 (715)
+++++|+|.| .|++|..+|+.|++.|...+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~ 34 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVV 34 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 5678999997 78999999999999996543
No 399
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.55 E-value=2.5 Score=48.16 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-...+|+|||+|..|..+|..|++.|. +++++|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 357899999999999999999999996 69999974
No 400
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.53 E-value=3.5 Score=43.37 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=30.4
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5789999999999999999999999988888764
No 401
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.51 E-value=1.8 Score=43.97 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=25.5
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeE
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~I 391 (715)
|++++++|.| .|++|..+|+.|+..|..-+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv 33 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVV 33 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEE
Confidence 5678899998 68999999999999996433
No 402
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=88.49 E-value=1.7 Score=45.95 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=27.0
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+|+|.|+ |.+|..+++.|++.|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 7999985 9999999999999995 78888764
No 403
>PLN02740 Alcohol dehydrogenase-like
Probab=88.43 E-value=3.7 Score=45.31 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|+|+|++|..++..+...|+++++.+|.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4679999999999999999999999988888876
No 404
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.42 E-value=0.56 Score=53.83 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=33.7
Q ss_pred HHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
...+.++||+|+|+|+.|..+|+.|.+.|. .+++.|..
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 345677899999999999999999999998 89999964
No 405
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.40 E-value=3.3 Score=45.46 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3679999999999999999888999988887764
No 406
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.32 E-value=1.5 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.9
Q ss_pred hhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+...||+|+|+|.+|...+..+.++|.. ++++|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 56679999999999999999999999975 777665
No 407
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.26 E-value=3.4 Score=44.89 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=29.4
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|+|+|++|..++..+...|+ +++.++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 6887776
No 408
>PRK09135 pteridine reductase; Provisional
Probab=88.24 E-value=2.6 Score=42.60 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=27.0
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
..++|+|.|+ |++|..+++.|++.|. ++.+++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 4578999985 8999999999999996 4555554
No 409
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.23 E-value=1.8 Score=43.97 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.5
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
|++|.|+ ||+|..+++.|++.|. ++++++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6899986 8999999999999996 67777653
No 410
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=88.23 E-value=0.99 Score=41.46 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=25.4
Q ss_pred hHHHhhc--cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 467 RLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 467 ~l~~li~--~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.++++++ ..|+||+|+.+....-+.. .+.++|+.+|.+
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~ 89 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYE-KALERGKHVVTA 89 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHH-HHHHCCCeEEEE
Confidence 3455666 7999999988866654333 456789999876
No 411
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.21 E-value=2 Score=44.02 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=28.0
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|.|+ +|+|..+|+.|+..|.. +.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence 57789999985 46999999999999974 666654
No 412
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.18 E-value=0.67 Score=50.28 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=29.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CeEEEEeCC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDNG 397 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-g~ItLVD~D 397 (715)
||.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 79999999999999999999996 789999974
No 413
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=88.14 E-value=2.6 Score=43.47 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.7
Q ss_pred hhccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEe
Q 005071 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD 395 (715)
.+++++|+|.| .|++|..+|+.|++.|.. +.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~ 38 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINY 38 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEe
Confidence 36789999997 678999999999999964 44543
No 414
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.01 E-value=0.32 Score=53.01 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-++|.|||+|..|+-+|..++..| =.+++.|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G-~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAG-YDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcC-CceEEEeCC
Confidence 368999999999999999999944 678888876
No 415
>PRK08264 short chain dehydrogenase; Validated
Probab=88.00 E-value=0.72 Score=46.69 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|+|+ |++|..+|+.|++.|..++++++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 56789999984 9999999999999999789998865
No 416
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.92 E-value=1.9 Score=46.81 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=63.2
Q ss_pred hHHhhccCeEEEEcCC-hHHHHHHHHHHHhcCCeEEEEeCCccc---ccCCCcC---CCCCcchhcCCCCcHHHHHHHHH
Q 005071 358 NLDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNGRVA---MSNPLRQ---SLYTLDDCLNGGDFKAMAAVKSL 430 (715)
Q Consensus 358 gq~kL~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItLVD~D~Ve---~sNl~RQ---~L~~~~Di~~~G~~KAeaaa~~L 430 (715)
-++.+++..|||-|+| |||-.+|..+++.|. ++.++|-..-. .-+..|+ .-+=.-|+. .+-.+...++++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis--~~eei~~~a~~V 108 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS--DREEIYRLAKKV 108 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCC--CHHHHHHHHHHH
Confidence 4678899999999876 899999999999998 88888864322 1122221 222234551 234566777778
Q ss_pred HhhCCCcEEEEEecccCCCCCCCC
Q 005071 431 ERIFPAVAAEGVVMAIPMPGHPVP 454 (715)
Q Consensus 431 ~~inP~v~v~~~~~~Ipmpgh~~~ 454 (715)
++..-.|.+-.-+--| ||+|++-
T Consensus 109 k~e~G~V~ILVNNAGI-~~~~~ll 131 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGI-VTGKKLL 131 (300)
T ss_pred HHhcCCceEEEecccc-ccCCCcc
Confidence 8777777776666666 7777654
No 417
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=87.91 E-value=1.1 Score=51.56 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=66.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhh-CCCcEEEEEec
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~i-nP~v~v~~~~~ 444 (715)
.|.|||+|..|..+|++|++.|. ++++.|.+.-....+.... .... +-.-+...++....+ .|.+-+..+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~--~~g~----~~~~~~s~~e~v~~l~~~dvIil~v~- 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH--AKGK----KIVGAYSIEEFVQSLERPRKIMLMVK- 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc--cCCC----CceecCCHHHHHhhcCCCCEEEEECC-
Confidence 47899999999999999999997 6888877543222221110 0000 000111122222222 3554444432
Q ss_pred ccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHhcCCeEEEee
Q 005071 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~esR~li~~~~~~~~kp~I~aa 506 (715)
||.++ ....+.+...+..-|+|||++-+ ..++... ..+.+.++-+|.++
T Consensus 73 ----~~~~v--------~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~-~~l~~~gi~fvdap 123 (467)
T TIGR00873 73 ----AGAPV--------DAVINQLLPLLEKGDIIIDGGNSHYPDTERRY-KELKAKGILFVGSG 123 (467)
T ss_pred ----CcHHH--------HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHH-HHHHhcCCEEEcCC
Confidence 12211 11224445556677999999853 3445544 45678899888873
No 418
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.88 E-value=0.69 Score=50.01 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
..||+|||+|++|+.+|..|++.| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 358999999999999999999999 6788887754
No 419
>PLN02214 cinnamoyl-CoA reductase
Probab=87.85 E-value=2.7 Score=45.87 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ |.+|+.+++.|+..|. +++.++.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 42 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVR 42 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 356789999997 9999999999999995 4555543
No 420
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.79 E-value=3.7 Score=41.70 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=28.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++|+|.| .|++|..+++.|++.|. ++++++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5799998 58999999999999997 78888774
No 421
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.71 E-value=3 Score=44.59 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=24.8
Q ss_pred ccCeEEEEc-CChHHHHHHHHHHHhcCCeEE
Q 005071 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKIT 392 (715)
Q Consensus 363 ~~~kVlIvG-aGgLGs~VA~~La~~GVg~It 392 (715)
.+++|+|.| .|.+|+.+++.|+..|.. ++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~ 33 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VK 33 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EE
Confidence 467999998 699999999999999964 44
No 422
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.65 E-value=1.9 Score=46.40 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=27.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+|.+||+|-+|..+|++|++.|. ++++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999995 57788764
No 423
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.63 E-value=3.5 Score=47.93 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=65.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCc---HHHHHHHHHHhh-CCCcEEE
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF---KAMAAVKSLERI-FPAVAAE 440 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~---KAeaaa~~L~~i-nP~v~v~ 440 (715)
.+|.+||+|..|+.+|++|++.|. ++++.|.+.=....+... .... |.. -+...++..+.+ .|.+-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 479999999999999999999995 677777632110000000 0000 110 112222333222 2555554
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh-H-HHHHHHHHHHhcCCeEEEee
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR-E-SRWLPTLLCANTNKITITAA 506 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~-e-sR~li~~~~~~~~kp~I~aa 506 (715)
-+.. | +....-.+.+...++.-|+|||++-+. + ++. ....+.+.|+-+|.+.
T Consensus 79 ~v~~-----~--------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~-~~~~l~~~Gi~fldap 132 (493)
T PLN02350 79 LVKA-----G--------APVDQTIKALSEYMEPGDCIIDGGNEWYENTER-RIKEAAEKGLLYLGMG 132 (493)
T ss_pred ECCC-----c--------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHH-HHHHHHHcCCeEEeCC
Confidence 4321 0 001111133344456679999988763 3 444 4667788899998873
No 424
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=87.62 E-value=2.5 Score=42.95 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCe
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ 390 (715)
++|+|.|+ |++|..+|+.|++.|..-
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v 29 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSV 29 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEE
Confidence 57999985 689999999999999653
No 425
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.58 E-value=2.2 Score=48.46 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.4
Q ss_pred CeEEEEcCChHHHHHHH--HHH---HhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVAR--MLM---AWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~--~La---~~GVg~ItLVD~D 397 (715)
.||.|||+|+.|...+. .++ .....+++|+|.|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did 38 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID 38 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCC
Confidence 37999999999998665 454 2333589999864
No 426
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.46 E-value=2.7 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~I 391 (715)
+++++|+|.|+ |++|..+++.|+..|..-+
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~ 34 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVV 34 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence 56789999985 5699999999999998543
No 427
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.38 E-value=1.8 Score=45.02 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=30.7
Q ss_pred hhccCeEEEEcC---ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++++++|.|+ +|+|..+|+.|++.|. ++.++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 467889999996 7999999999999996 57777754
No 428
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=87.38 E-value=3.4 Score=51.58 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSN 403 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sN 403 (715)
-.++||+|||+|..|-++|..|++.| -++|++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccccccccc
Confidence 46889999999999999999999999 579999987665444
No 429
>PRK12743 oxidoreductase; Provisional
Probab=87.32 E-value=2.8 Score=43.19 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.2
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
.++|+|.|+ |+||..+|+.|+..|.. +.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 468999985 78999999999999974 4443
No 430
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=87.32 E-value=3.4 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=27.2
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD 395 (715)
.+++++++|.|+ |++|..+|+.|+..|.. +.++|
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGIN 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEec
Confidence 367889999975 58999999999999964 45544
No 431
>PRK06823 ornithine cyclodeaminase; Validated
Probab=87.30 E-value=2.6 Score=46.15 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=54.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
..++++|+|+|..|-.-++.+.. ..+++|.+.|. ...|+++.++.+++. ++.++.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~ 182 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQAL--GFAVNT 182 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhc--CCcEEE
Confidence 36799999999999999888775 34567777544 455788888877654 233332
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (715)
. +..++.++++|+|+.||-+.
T Consensus 183 ~-----------------------~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 183 T-----------------------LDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred E-----------------------CCHHHHhcCCCEEEEecCCC
Confidence 2 34567789999999999764
No 432
>PRK06182 short chain dehydrogenase; Validated
Probab=87.29 E-value=2.3 Score=44.19 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=27.2
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r 35 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR 35 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999996 8999999999999996 5665554
No 433
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.28 E-value=0.49 Score=54.95 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=29.3
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.-+||.|||+|..|+.+|.+|+..| -.++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG-HQVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 3467999999999999999999999 467788764
No 434
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=87.27 E-value=3 Score=43.32 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.7
Q ss_pred hccCeEEEEcC---ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItLVD 395 (715)
+++++|+|.|+ +|+|..+|+.|++.|.. +.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~ 39 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITY 39 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEe
Confidence 57889999998 49999999999999974 55554
No 435
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.27 E-value=2.5 Score=44.00 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=29.0
Q ss_pred HhhccCeEEEEcC---ChHHHHHHHHHHHhcCCeEEEEe
Q 005071 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 360 ~kL~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItLVD 395 (715)
++++++.|+|.|+ +|+|..+|+.|++.|. ++.+.+
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~ 39 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTY 39 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEc
Confidence 4578899999994 5999999999999997 455554
No 436
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.19 E-value=3 Score=43.28 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.7
Q ss_pred hhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.++++.|+|.|++ |+|..+|+.|+..|. ++.++|.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4678999999985 899999999999996 57777763
No 437
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.18 E-value=0.8 Score=49.70 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.||.|||+|.+|+.+|..|+..|.++++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999997
No 438
>PRK12742 oxidoreductase; Provisional
Probab=87.17 E-value=2.9 Score=42.10 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.6
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
++++++|+|.|+ |++|..+|+.|+..|.. +.++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 467889999996 89999999999999974 5443
No 439
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.14 E-value=2.9 Score=47.42 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=29.1
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+++++|+|.|+ ||+|.++|+.|++.|. ++.+++.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r 210 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS 210 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999986 8999999999999996 5555554
No 440
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.05 E-value=0.79 Score=48.69 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 579999999999999999999997 88898864
No 441
>PRK05599 hypothetical protein; Provisional
Probab=87.05 E-value=3 Score=42.99 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.|+|.|+ +|+|-.+|+.|+. | .++.+++.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeC
Confidence 4788875 7899999999995 7 67777765
No 442
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.03 E-value=2.9 Score=43.95 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=29.3
Q ss_pred hccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++.++|.|++ |+|..+|+.|++.|. ++.+++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecC
Confidence 567899999997 899999999999996 6777664
No 443
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=87.00 E-value=3.2 Score=41.91 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=28.1
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|.| .|++|..+++.|+..|. .+++.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~ 38 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGT 38 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence 5688999998 58999999999999996 5655543
No 444
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.99 E-value=1.4 Score=47.29 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+|.|||+|-.|..+|++|++.|. +++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999995 78888764
No 445
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.98 E-value=8.1 Score=39.90 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=28.1
Q ss_pred hHHhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEE
Q 005071 358 NLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (715)
Q Consensus 358 gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItL 393 (715)
+.+..+.++|+|+|+ |++|..+++.|+..|.. ++.
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 345566889999996 99999999999998853 444
No 446
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=86.97 E-value=3.7 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=23.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHh-cCCeEEEEe
Q 005071 365 RKCLLLGAGTLGCQVARMLMAW-GVRKITLLD 395 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~-GVg~ItLVD 395 (715)
.||.|+|+|.+|..+++.|... ++.-..+++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence 3899999999999999999876 333333333
No 447
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=86.96 E-value=2.5 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++|||.|+ |.+|+++++.|+..|. +++.+|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47999985 8899999999999996 56766653
No 448
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.92 E-value=0.75 Score=50.30 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-eEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg-~ItLVD~D 397 (715)
.||.|+|+|.+|+.+|..|+.-+++ .|.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999974
No 449
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.89 E-value=0.88 Score=48.57 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-+||.|||+|..|+.+|..|++.|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999995 78888864
No 450
>PRK06392 homoserine dehydrogenase; Provisional
Probab=86.84 E-value=3.7 Score=45.22 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=24.6
Q ss_pred eEEEEcCChHHHHHHHHHHH--------hcCCeEEEEeC
Q 005071 366 KCLLLGAGTLGCQVARMLMA--------WGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~--------~GVg~ItLVD~ 396 (715)
||.|+|+|++|..+++.|.. .+++-+.+.|.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 79999999999999999987 34444555564
No 451
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=86.80 E-value=3.5 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCe
Q 005071 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (715)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ 390 (715)
++|+|.|+ |++|..+++.|+..|..-
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v 28 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTV 28 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46899986 899999999999999653
No 452
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=86.79 E-value=4.5 Score=40.07 Aligned_cols=58 Identities=33% Similarity=0.432 Sum_probs=41.6
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005071 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~~ 444 (715)
.++|+| .|+||-.+++.|+.-|..+|.++-... . +.++.+.+-+.|++. ++++..+..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~---~~~~~~~~i~~l~~~--g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------A---PSAEAEAAIRELESA--GARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------G---GSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------C---ccHHHHHHHHHHHhC--CCceeeecc
Confidence 478886 999999999999999999999976532 2 455666677777765 456666553
No 453
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.78 E-value=3.9 Score=43.84 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=62.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC---CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV---g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
.||.+||+|..|..++.-|.+.|. .+|.+.|+ ...|.. .+.+.++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence 579999999999999999999994 56666544 111222 445555433 1
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHH-HhcCCeEEEeeeC
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC-ANTNKITITAALG 508 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~-~~~~kp~I~aalG 508 (715)
..+..+.+.+.|+||+|.=.....-.+..+- ...++.+|+.+-|
T Consensus 53 -----------------------~~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISiaAG 97 (266)
T COG0345 53 -----------------------TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIAAG 97 (266)
T ss_pred -----------------------cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEeCC
Confidence 1223456788999999998766665566554 3567888886433
No 454
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=86.77 E-value=0.86 Score=52.56 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|+|+||+|..++..|+..|+ +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 8888764
No 455
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.50 E-value=1.9 Score=44.16 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCC-cHHHHHHHHHHhhCCCcEE
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVAA 439 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~-~KAeaaa~~L~~inP~v~v 439 (715)
+++++++|.|+ ||+|..+++.|+..|. +++++|.+.-... ......+-.-|+ .. ...+.+.+.+.+.++.+++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~~-~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id~ 78 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPETV-DGRPAEFHAADV---RDPDQVAALVDAIVERHGRLDV 78 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhhh-cCCceEEEEccC---CCHHHHHHHHHHHHHHcCCCCE
Confidence 57889999985 7899999999999997 6888887642201 111222334455 32 2344555555555665555
Q ss_pred EEEe
Q 005071 440 EGVV 443 (715)
Q Consensus 440 ~~~~ 443 (715)
-.+.
T Consensus 79 vi~~ 82 (252)
T PRK07856 79 LVNN 82 (252)
T ss_pred EEEC
Confidence 5444
No 456
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.36 E-value=2.8 Score=48.04 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=30.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 56799999999999999999999997 59999864
No 457
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=86.31 E-value=1.9 Score=46.75 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=25.6
Q ss_pred EEcCChHHHHHHHHHHHhcC-CeEEEEeC
Q 005071 369 LLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (715)
Q Consensus 369 IvGaGgLGs~VA~~La~~GV-g~ItLVD~ 396 (715)
|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999998 57999886
No 458
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.29 E-value=0.91 Score=49.50 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=30.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~V 399 (715)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999995 6999998654
No 459
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.26 E-value=0.99 Score=48.28 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=28.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999994 78888864
No 460
>PLN00198 anthocyanidin reductase; Provisional
Probab=86.22 E-value=4.5 Score=43.57 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
+++++|+|.| +|.+|+.+++.|+..|. ++++++.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578899998 78899999999999996 56655554
No 461
>PRK07069 short chain dehydrogenase; Validated
Probab=86.21 E-value=4.3 Score=41.19 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=25.1
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+|+|.| .|++|..+++.|++.|. ++.+++.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r 31 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDI 31 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 478887 68999999999999996 6777764
No 462
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.07 E-value=4.2 Score=44.92 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=28.3
Q ss_pred HHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 468 LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 468 l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
.++++.+.|+||+||....++.... .+.++|+++|..
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a~-~~~~aGk~VI~~ 108 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNKE-LYEKAGVKAIFQ 108 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHHH-HHHHCCCEEEEc
Confidence 4556678999999998877766554 667788998864
No 463
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=86.04 E-value=2.4 Score=47.63 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=59.4
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~ 441 (715)
...||+|+|+ |.+|.++.+.|..--.-+|+++-.+ ... |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence 3459999998 7899999999998866777776442 111 321 122223221100
Q ss_pred EecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
. .++ .+.+ ..+ ++++|+||.|+.+..++-++..+ +.++.+|+.
T Consensus 91 ~-~~~----------------~~~~-~~~-~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDl 133 (381)
T PLN02968 91 L-PNL----------------VAVK-DAD-FSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDL 133 (381)
T ss_pred c-cce----------------ecCC-HHH-hcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEc
Confidence 0 000 0111 112 47899999999998888877775 468889974
No 464
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=85.94 E-value=3.1 Score=44.99 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|.|+ |.+|+.+++.|+..|...+..+|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~ 33 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDK 33 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecC
Confidence 7999986 999999999999999765665554
No 465
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=85.90 E-value=3.8 Score=46.67 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=63.1
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 366 KCLLLGAGTLGC-QVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 366 kVlIvGaGgLGs-~VA~~La~----~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
||.|||+|+.-+ .+.+.|+. .++++|+|+|-|. ...+.+ + ...+.+.+++..+.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~--------v-------~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI--------V-------GALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH--------H-------HHHHHHHHHhhCCCeEEE
Confidence 799999999755 45555554 5789999999874 111111 1 223445555666677766
Q ss_pred EEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeC--CChHHHHHHHHHHHhcCCe
Q 005071 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT--DTRESRWLPTLLCANTNKI 501 (715)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t--Ds~esR~li~~~~~~~~kp 501 (715)
... +.++.++++|+||.+. ...+.|..-.++..++|+.
T Consensus 65 ~t~-----------------------d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~ 104 (419)
T cd05296 65 LTT-----------------------DRREALEGADFVFTQIRVGGLEARALDERIPLKHGVI 104 (419)
T ss_pred EeC-----------------------CHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc
Confidence 542 4567789999999976 3445666666777777763
No 466
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.89 E-value=0.97 Score=47.86 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~V 399 (715)
.+|+|||+|-.|+.+|..|++.|+. ++++|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999976 888887554
No 467
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.83 E-value=4.8 Score=44.57 Aligned_cols=100 Identities=19% Similarity=0.091 Sum_probs=64.4
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
...+|+|+|+||+|-++...+..+|.++|.-||-. ..|-+-|+ . +-.+. .+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~----------------------~~Kl~~A~-~----fGAT~--~v 235 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN----------------------PEKLELAK-K----FGATH--FV 235 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCC----------------------HHHHHHHH-h----cCCce--ee
Confidence 46799999999999999999999999999999962 11222221 1 11111 11
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEe
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~li~~~~~~~~kp~I~a 505 (715)
+ ..+. ..-.+.+.++-. +.|.+|+|+.+.+....--.++.+.|.-+|-+
T Consensus 236 n-----------~~~~---~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 236 N-----------PKEV---DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred c-----------chhh---hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEe
Confidence 1 0000 011233444545 89999999999997666666677777765543
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.82 E-value=0.27 Score=59.63 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
++|.|||+|+.|+.+|..++..|+ .++++|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999995 778888753
No 469
>PRK07832 short chain dehydrogenase; Provisional
Probab=85.80 E-value=3.4 Score=43.02 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.5
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
++++|.| .||+|..+++.|++.|.. +++++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r 32 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDR 32 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 3688887 589999999999999964 777664
No 470
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=85.74 E-value=2.3 Score=48.86 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.4
Q ss_pred hHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeE
Q 005071 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKI 391 (715)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~I 391 (715)
+...|++++|+|||+|.+|..-|.+|--.|+..+
T Consensus 30 ~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 30 GASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3688999999999999999999999999998544
No 471
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=85.73 E-value=1 Score=49.91 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=29.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 79999999999999999999995 799999974
No 472
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.70 E-value=3.9 Score=43.18 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=29.6
Q ss_pred hccCeEEEEcC---ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++.|+|.|+ +|+|..+|+.|++.|. ++.++|.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence 56889999998 4999999999999997 67777653
No 473
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.70 E-value=2.7 Score=48.20 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=30.9
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
++++||+|+|+|--|-.+|+.|.+.|.. +++.|.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence 5678999999999999999999999965 67777643
No 474
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=85.70 E-value=3.2 Score=44.26 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=26.0
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
||||.|+ |-+|+.+++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999996 999999999999988 57777753
No 475
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.64 E-value=3.3 Score=49.57 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.7
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46799999999999999999999996 69999865
No 476
>PRK15076 alpha-galactosidase; Provisional
Probab=85.64 E-value=2.6 Score=48.05 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=56.0
Q ss_pred CeEEEEcCChHHHHHHH--HHH-HhcC--CeEEEEeCCcccccCCCcCCCCCcchhcCCCCcH-HHH-HHHHHHhhCCCc
Q 005071 365 RKCLLLGAGTLGCQVAR--MLM-AWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK-AMA-AVKSLERIFPAV 437 (715)
Q Consensus 365 ~kVlIvGaGgLGs~VA~--~La-~~GV--g~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~K-Aea-aa~~L~~inP~v 437 (715)
.||.|||+|++|...+. .++ ..+. .+|+|+|-|. . +.+ +.+ +.+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~------e--------------r~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP------E--------------RLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH------H--------------HHHHHHHHHHHHHHhcCCCe
Confidence 48999999999977665 554 2222 4899999743 1 111 222 333334444445
Q ss_pred EEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCCh--HHHH-HHHHHHHhcCCe
Q 005071 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRW-LPTLLCANTNKI 501 (715)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~-li~~~~~~~~kp 501 (715)
+++.. .+..+.++++|+||.+.-.. ..++ .=.++..++|+.
T Consensus 62 ~i~~t-----------------------tD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~ 105 (431)
T PRK15076 62 KITAT-----------------------TDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLR 105 (431)
T ss_pred EEEEE-----------------------CCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCe
Confidence 55432 12345678999999988653 3343 233566777765
No 477
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.61 E-value=3.2 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred HhhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.++++++|+|.|+ |+||..+|+.|++.|. ++++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5778899999985 8899999999999996 4667654
No 478
>PLN02206 UDP-glucuronate decarboxylase
Probab=85.54 E-value=5.9 Score=45.22 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.7
Q ss_pred hhccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+-++.||+|.|+ |-+|+.+++.|...|. +++.+|+
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 346689999995 9999999999999996 4666664
No 479
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.53 E-value=3.9 Score=48.60 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=60.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~~ 443 (715)
+.+|+|+|.|-+|..+++.|...|+ +++++|.|.- +++.+ ++. +.. .+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~----~~~--g~~--v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS----------------------AVNLM----RKY--GYK--VYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHH----HhC--CCe--EEE
Confidence 4689999999999999999999997 5788888531 22222 221 222 222
Q ss_pred cccCCCCCCCCCccccccccchhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005071 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANTN 499 (715)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~li~~~~~~~~ 499 (715)
.+. .+.+-+++. ++++|+|+.++|+.+.-..+...+++++
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 449 GDA----------------TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred eeC----------------CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 211 133333332 6789999999999998877777777764
No 480
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=85.47 E-value=4.3 Score=41.87 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=38.4
Q ss_pred eEEEEc-CChHHHHHHHHHHH----hcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEE
Q 005071 366 KCLLLG-AGTLGCQVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~----~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~ 440 (715)
.|+|.| .||+|..+|+.|++ .|. ++.+++.+ ..+.+.+++.|+...|..++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~----------------------~~~~~~~~~~l~~~~~~~~v~ 58 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARN----------------------DEALRQLKAEIGAERSGLRVV 58 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcC----------------------HHHHHHHHHHHHhcCCCceEE
Confidence 577887 47999999999997 564 67776542 224455566666555666666
Q ss_pred EEeccc
Q 005071 441 GVVMAI 446 (715)
Q Consensus 441 ~~~~~I 446 (715)
.+..++
T Consensus 59 ~~~~Dl 64 (256)
T TIGR01500 59 RVSLDL 64 (256)
T ss_pred EEEecc
Confidence 665443
No 481
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=85.43 E-value=3 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.8
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
++++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 46899999999999999999999996 79998864
No 482
>PRK09134 short chain dehydrogenase; Provisional
Probab=85.30 E-value=3.9 Score=42.08 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred ccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEE
Q 005071 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (715)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLV 394 (715)
.+++++|.|+ |++|..+++.|++.|.. +.++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~ 39 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVH 39 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 4678999974 68999999999999964 4443
No 483
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=85.25 E-value=4.5 Score=41.17 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=30.6
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
+++++++|.|+ |++|..+++.|++.|. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 66889999986 6899999999999995 677777765
No 484
>PRK00811 spermidine synthase; Provisional
Probab=85.15 E-value=3 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=25.6
Q ss_pred ccCeEEEEcCChHHHHHHHHHHH-hcCCeEEEEeCCc
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGR 398 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItLVD~D~ 398 (715)
..++||++|+|+ |.. ++.+++ .++.+++.||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~-~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGT-LREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHH-HHHHHcCCCCCEEEEEeCCH
Confidence 467999999996 444 555555 4899999999854
No 485
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.11 E-value=1.1 Score=50.23 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCchhHHhhccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 334 PTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 334 p~~la~~a~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
....+|.+.-+=+.+.|. .+ ..|++++|.|||+|.+|..+|+.|.+.|+ ++..+|+
T Consensus 92 a~aVAE~v~~~lL~l~r~-----~g-~~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 92 ARGVVDYVLGSLLTLAER-----EG-VDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred hHHHHHHHHHHHHHHhcc-----cC-CCcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 344566555443333432 11 36889999999999999999999999998 4555564
No 486
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.11 E-value=4.4 Score=46.10 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=19.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHh
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAW 386 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~ 386 (715)
.-||.|+|+|++|..+++.|...
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 45899999999999999988653
No 487
>PLN02827 Alcohol dehydrogenase-like
Probab=85.08 E-value=6.4 Score=43.57 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=30.1
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|+..++.+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4789999999999999999988999988887764
No 488
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.94 E-value=5.2 Score=35.86 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=35.5
Q ss_pred hhHHHhhccCCEEEEeCC--ChHHHHHHHHHHHhcCCeEEEe
Q 005071 466 RRLTDLILSHDVIFLLTD--TRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 466 ~~l~~li~~~DvV~~~tD--s~esR~li~~~~~~~~kp~I~a 505 (715)
..++..+..+|+||..|| +..+.|.+-..|.++++|++.+
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 458889999999999999 5568899999999999999976
No 489
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.87 E-value=4.3 Score=41.87 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.2
Q ss_pred hccCeEEEEc-CChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++|+|.| .||+|..+|+.|++.|. ++.+++.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~ 40 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGV 40 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 6788999997 67999999999999997 4566554
No 490
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.75 E-value=3.7 Score=49.89 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.3
Q ss_pred hccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCC
Q 005071 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (715)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D 397 (715)
-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 467899999999999999999999995 69999863
No 491
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.61 E-value=1.5 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++++|.|+ |++|..+++.|++.|. ++++++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 57789999998 8999999999999997 6888775
No 492
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.46 E-value=8.8 Score=41.45 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=29.9
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
.+.+|+|.|+|++|..++..+...|++.++.+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4679999999999999999999999988777664
No 493
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.43 E-value=1.1 Score=53.42 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCc
Q 005071 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (715)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~ 398 (715)
...|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 3689999999999999999999996 699999874
No 494
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.40 E-value=5.2 Score=41.62 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=29.7
Q ss_pred hhccCeEEEEcCC---hHHHHHHHHHHHhcCCeEEEEeC
Q 005071 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+++++.++|.|++ |+|..+|+.|++.|. ++.+++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r 42 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQ 42 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeC
Confidence 4678889999996 799999999999997 5777665
No 495
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.38 E-value=5.6 Score=43.53 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred ccCeEEEEcCChHHHHHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCcchhcCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005071 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (715)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~~Di~~~G~~KAeaaa~~L~~inP~v~v~~~ 442 (715)
...+|+|||+|-.|..+|..|++.|. +++++|.+..-..-+...... +..-.+.+...+.++... .++.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~--------~~~~~~~~~~~~~~l~~~-~i~~~ 86 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPE--------FRIPIERVREGVKELEEA-GVVFH 86 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcc--------cccCHHHHHHHHHHHHhC-CeEEe
Q ss_pred ecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEeCCC
Q 005071 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (715)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (715)
....-+-.+.....................-.+|.||.+|.+
T Consensus 87 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 87 TRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred cCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
No 496
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=84.37 E-value=9 Score=40.23 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=24.3
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCeEEEEe
Q 005071 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (715)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItLVD 395 (715)
||+|+| .|.+|..+++.|++.|.. ++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEe
Confidence 689997 599999999999999964 55665
No 497
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=84.33 E-value=7.5 Score=40.52 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
||+|+|+ |.+|..+++.|...|. +++.++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 6899996 9999999999999984 6777765
No 498
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.33 E-value=4.8 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.1
Q ss_pred hccCeEEEEcC-ChHHHHHHHHHHHhcCCeEEEEeC
Q 005071 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (715)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItLVD~ 396 (715)
+...||+|||. |-+|..+|+.|-...-.+|+-+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 46789999999 999999999999754446777776
No 499
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=84.25 E-value=7.8 Score=42.22 Aligned_cols=105 Identities=11% Similarity=0.199 Sum_probs=63.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCC--eEEEEeCCcccccC--CCcCCCCCcchhcC---CCCcH-HHHHHHHHHhhCCCc
Q 005071 366 KCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSN--PLRQSLYTLDDCLN---GGDFK-AMAAVKSLERIFPAV 437 (715)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg--~ItLVD~D~Ve~sN--l~RQ~L~~~~Di~~---~G~~K-Aeaaa~~L~~inP~v 437 (715)
||.|||.||-||.++..|...|+. ++..+|.|.-.++. ..+-.++..+-... +|.|. ...+++
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L~~~~a~~ki~iG~~~t~g~GaG~~~~~G~~~a~--------- 72 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAE--------- 72 (303)
T ss_pred EEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHHhcCCCCcEEecCCccccCCCCCCCHHHHHHHHH---------
Confidence 799999999999999999999975 57888888844433 22333332211100 11221 111111
Q ss_pred EEEEEecccCCCCCCCCCccccccccchhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHhcCCeEEEe
Q 005071 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (715)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~esR~li~~~~~~~~kp~I~a 505 (715)
...+.+.+.++++|.||.+ |.+-.+-++ .++++..+++++..
T Consensus 73 -------------------------e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~i-a~~~ke~~~~~~~v 120 (303)
T cd02191 73 -------------------------EVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVV-AEHLKRIGTLTVAV 120 (303)
T ss_pred -------------------------HHHHHHHHHHcCCCEEEEEeccCCccchhHHHHH-HHHHHHhCCCEEEE
Confidence 1234566778889998885 445445554 46777777766553
No 500
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=84.11 E-value=3.5 Score=46.10 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=37.1
Q ss_pred eEEEEcCChHHH-HHHHHHHHhcCCeEEEEeCCcccccCCCcCCCCCc
Q 005071 366 KCLLLGAGTLGC-QVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL 412 (715)
Q Consensus 366 kVlIvGaGgLGs-~VA~~La~~GVg~ItLVD~D~Ve~sNl~RQ~L~~~ 412 (715)
||+++|+|.+|+ .+...|.++| -.|++||...--..-+++|-+|+.
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~qglY~v 48 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKRKSYQV 48 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcCCCeEE
Confidence 799999999998 7788999999 569999965445567777777753
Done!