Query 005072
Match_columns 715
No_of_seqs 460 out of 2881
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 9E-113 2E-117 903.3 48.0 568 105-715 1-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 1E-110 3E-115 943.0 47.8 597 99-715 41-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 4E-106 9E-111 923.3 62.4 540 102-715 59-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 9E-104 2E-108 908.4 61.4 538 104-715 58-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 3E-100 5E-105 862.3 51.4 541 103-715 46-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 2.6E-78 5.6E-83 671.6 45.4 395 312-715 2-416 (416)
7 cd06203 methionine_synthase_re 100.0 1.2E-76 2.7E-81 655.0 43.4 381 320-715 2-398 (398)
8 cd06202 Nitric_oxide_synthase 100.0 3.3E-76 7.2E-81 652.7 45.0 386 320-715 2-402 (406)
9 cd06207 CyPoR_like NADPH cytoc 100.0 2.2E-76 4.7E-81 650.7 43.3 378 320-715 2-382 (382)
10 cd06206 bifunctional_CYPOR The 100.0 1.9E-73 4.2E-78 627.7 43.2 374 320-715 2-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 5.6E-71 1.2E-75 602.6 38.5 355 320-715 2-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 3.5E-70 7.6E-75 614.5 41.3 370 306-715 159-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 8E-47 1.7E-51 385.2 20.2 217 309-532 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.2E-38 2.7E-43 345.4 27.8 273 309-715 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3.5E-36 7.6E-41 315.9 24.1 232 476-715 31-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 5.3E-33 1.2E-37 295.1 30.5 189 492-715 100-289 (289)
17 cd06200 SiR_like1 Cytochrome p 100.0 3.8E-34 8.3E-39 297.0 20.8 211 476-715 31-245 (245)
18 PLN03116 ferredoxin--NADP+ red 100.0 1.3E-33 2.7E-38 302.4 22.1 227 477-715 57-307 (307)
19 TIGR03224 benzo_boxA benzoyl-C 100.0 1.8E-32 3.9E-37 303.7 30.2 270 309-715 136-411 (411)
20 cd06208 CYPOR_like_FNR These f 100.0 4.4E-33 9.6E-38 295.5 21.9 226 477-715 41-286 (286)
21 PRK09004 FMN-binding protein M 100.0 1.7E-33 3.8E-38 268.6 16.7 144 104-260 1-146 (146)
22 PRK05723 flavodoxin; Provision 100.0 2.6E-33 5.6E-38 268.4 16.6 147 105-261 1-150 (151)
23 PRK08105 flavodoxin; Provision 100.0 5.4E-33 1.2E-37 266.1 17.0 145 104-260 1-147 (149)
24 PF00258 Flavodoxin_1: Flavodo 99.9 1E-26 2.2E-31 221.2 10.1 138 109-252 1-143 (143)
25 cd00322 FNR_like Ferredoxin re 99.9 1.3E-24 2.7E-29 221.4 14.8 188 476-685 22-213 (223)
26 PRK10926 ferredoxin-NADP reduc 99.9 1.4E-24 3.1E-29 225.8 14.3 187 476-685 30-228 (248)
27 cd06189 flavin_oxioreductase N 99.9 1.8E-24 3.9E-29 221.4 14.7 184 475-685 24-212 (224)
28 cd06188 NADH_quinone_reductase 99.9 1.6E-24 3.4E-29 229.9 14.1 179 492-685 86-271 (283)
29 PRK07308 flavodoxin; Validated 99.9 6.4E-24 1.4E-28 203.0 16.4 140 104-256 1-142 (146)
30 cd06211 phenol_2-monooxygenase 99.9 5.7E-24 1.2E-28 219.8 15.2 184 476-685 35-226 (238)
31 PRK07609 CDP-6-deoxy-delta-3,4 99.9 4.8E-24 1E-28 231.8 14.5 183 476-685 131-320 (339)
32 PRK08051 fre FMN reductase; Va 99.9 5.7E-24 1.2E-28 219.1 14.2 183 476-685 29-217 (232)
33 cd06190 T4MO_e_transfer_like T 99.9 6.3E-24 1.4E-28 218.4 14.3 186 476-685 23-218 (232)
34 PRK13289 bifunctional nitric o 99.9 8E-24 1.7E-28 235.1 15.4 184 477-685 185-380 (399)
35 PRK05464 Na(+)-translocating N 99.9 9.6E-24 2.1E-28 234.9 15.1 181 490-685 208-395 (409)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 1.4E-23 3E-28 216.4 15.1 184 476-685 34-223 (236)
37 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.4E-23 3E-28 215.4 14.8 181 476-685 30-215 (228)
38 cd06187 O2ase_reductase_like T 99.9 9.1E-24 2E-28 215.9 12.7 183 476-685 23-212 (224)
39 cd06191 FNR_iron_sulfur_bindin 99.9 1.4E-23 3E-28 215.8 13.9 186 477-685 28-219 (231)
40 PRK11872 antC anthranilate dio 99.9 1.9E-23 4.1E-28 227.1 15.4 182 476-685 136-323 (340)
41 TIGR01941 nqrF NADH:ubiquinone 99.9 1.7E-23 3.8E-28 232.5 15.2 180 491-685 205-391 (405)
42 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2.1E-23 4.6E-28 215.9 14.2 187 477-686 25-224 (241)
43 cd06212 monooxygenase_like The 99.9 2.9E-23 6.3E-28 213.6 14.9 183 476-685 29-219 (232)
44 PRK10684 HCP oxidoreductase, N 99.9 2.6E-23 5.6E-28 225.4 14.5 184 477-685 37-225 (332)
45 PRK08345 cytochrome-c3 hydroge 99.9 2.9E-23 6.2E-28 220.7 14.4 180 477-685 38-234 (289)
46 cd06194 FNR_N-term_Iron_sulfur 99.9 9.4E-23 2E-27 208.3 16.1 184 476-685 23-209 (222)
47 PRK05713 hypothetical protein; 99.9 9.2E-23 2E-27 219.2 14.2 177 476-685 118-296 (312)
48 PRK12359 flavodoxin FldB; Prov 99.9 4.5E-22 9.9E-27 194.1 17.4 144 105-263 1-171 (172)
49 PRK06703 flavodoxin; Provision 99.9 4.9E-22 1.1E-26 191.1 16.8 146 104-262 1-149 (151)
50 cd06213 oxygenase_e_transfer_s 99.9 2E-22 4.4E-27 206.7 14.8 179 477-685 28-215 (227)
51 cd06184 flavohem_like_fad_nad_ 99.9 1.9E-22 4.1E-27 209.5 14.7 181 476-685 36-231 (247)
52 cd06215 FNR_iron_sulfur_bindin 99.9 2.1E-22 4.6E-27 206.8 14.3 186 476-685 27-219 (231)
53 cd06221 sulfite_reductase_like 99.9 2.4E-22 5.2E-27 209.7 14.1 182 476-686 27-213 (253)
54 cd06216 FNR_iron_sulfur_bindin 99.9 1.6E-22 3.5E-27 209.6 12.5 182 477-686 46-233 (243)
55 KOG1160 Fe-S oxidoreductase [E 99.9 4.3E-22 9.4E-27 209.6 14.2 143 105-262 47-194 (601)
56 cd06196 FNR_like_1 Ferredoxin 99.9 3.8E-22 8.3E-27 203.2 12.9 177 476-685 27-208 (218)
57 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 6.1E-22 1.3E-26 216.5 14.0 188 476-686 32-230 (352)
58 cd06217 FNR_iron_sulfur_bindin 99.9 8E-22 1.7E-26 203.0 13.3 183 477-685 31-223 (235)
59 cd06214 PA_degradation_oxidore 99.9 1E-21 2.3E-26 203.0 14.2 187 476-685 32-228 (241)
60 PTZ00274 cytochrome b5 reducta 99.9 7E-22 1.5E-26 212.4 12.9 185 476-681 81-281 (325)
61 cd06198 FNR_like_3 NAD(P) bind 99.9 6.8E-22 1.5E-26 201.2 12.1 178 476-685 22-203 (216)
62 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.5E-21 3.2E-26 202.9 13.8 173 476-686 24-203 (246)
63 COG1018 Hmp Flavodoxin reducta 99.9 2.2E-21 4.8E-26 202.6 15.0 182 477-688 35-221 (266)
64 PRK08221 anaerobic sulfite red 99.9 1.4E-21 3E-26 205.0 13.5 177 477-685 33-214 (263)
65 cd06183 cyt_b5_reduct_like Cyt 99.9 3.4E-21 7.3E-26 198.0 14.1 186 476-685 28-224 (234)
66 TIGR02911 sulfite_red_B sulfit 99.9 3.2E-21 7E-26 202.1 13.1 177 477-685 31-212 (261)
67 PTZ00319 NADH-cytochrome B5 re 99.8 5.1E-21 1.1E-25 204.4 14.1 196 477-685 64-290 (300)
68 cd06185 PDR_like Phthalate dio 99.8 1.4E-20 3E-25 190.7 14.6 173 476-685 25-198 (211)
69 PRK09271 flavodoxin; Provision 99.8 2.7E-20 5.9E-25 180.8 15.7 142 105-260 1-147 (160)
70 cd06197 FNR_like_2 FAD/NAD(P) 99.8 9.7E-21 2.1E-25 193.5 11.8 147 492-684 60-211 (220)
71 PRK00054 dihydroorotate dehydr 99.8 2.4E-20 5.3E-25 194.2 12.3 167 476-685 31-203 (250)
72 PRK06756 flavodoxin; Provision 99.8 1.6E-19 3.5E-24 173.0 16.2 137 104-253 1-137 (148)
73 TIGR01752 flav_long flavodoxin 99.8 1.7E-19 3.7E-24 176.4 16.1 140 106-260 1-166 (167)
74 COG0543 UbiB 2-polyprenylpheno 99.8 6.8E-20 1.5E-24 190.9 13.6 178 476-686 35-215 (252)
75 TIGR01754 flav_RNR ribonucleot 99.8 1.3E-19 2.8E-24 172.1 13.6 136 105-256 1-139 (140)
76 COG2871 NqrF Na+-transporting 99.8 6.7E-20 1.5E-24 184.3 12.1 186 491-691 210-402 (410)
77 PRK06222 ferredoxin-NADP(+) re 99.8 6.1E-20 1.3E-24 194.5 11.9 172 477-685 28-203 (281)
78 cd06192 DHOD_e_trans_like FAD/ 99.8 1E-19 2.2E-24 188.7 13.0 173 476-686 24-201 (243)
79 cd06220 DHOD_e_trans_like2 FAD 99.8 1.3E-19 2.7E-24 186.9 13.3 164 476-685 23-189 (233)
80 TIGR01753 flav_short flavodoxi 99.8 4.4E-19 9.6E-24 167.7 14.6 135 107-255 1-138 (140)
81 cd06219 DHOD_e_trans_like1 FAD 99.8 1.5E-19 3.3E-24 188.0 12.1 172 476-684 26-201 (248)
82 PRK05802 hypothetical protein; 99.8 1E-19 2.2E-24 195.6 9.5 169 478-685 96-276 (320)
83 PLN02252 nitrate reductase [NA 99.8 3.9E-19 8.4E-24 212.2 13.9 194 477-685 665-878 (888)
84 COG4097 Predicted ferric reduc 99.8 8.7E-19 1.9E-23 182.9 13.8 164 489-685 259-423 (438)
85 COG0716 FldA Flavodoxins [Ener 99.8 7.5E-18 1.6E-22 162.1 15.8 143 104-259 1-150 (151)
86 PTZ00306 NADH-dependent fumara 99.8 1.8E-18 3.9E-23 214.3 13.5 186 477-685 948-1151(1167)
87 KOG0534 NADH-cytochrome b-5 re 99.8 7.9E-18 1.7E-22 175.1 15.7 183 477-682 82-273 (286)
88 PRK09267 flavodoxin FldA; Vali 99.8 2E-17 4.4E-22 162.1 16.6 142 104-260 1-167 (169)
89 PF00175 NAD_binding_1: Oxidor 99.7 1.8E-17 3.8E-22 149.8 9.1 104 569-680 1-109 (109)
90 PRK12778 putative bifunctional 99.7 2.5E-17 5.4E-22 196.9 12.3 172 477-685 28-203 (752)
91 cd06186 NOX_Duox_like_FAD_NADP 99.7 9.2E-17 2E-21 162.6 11.1 169 476-684 24-197 (210)
92 cd06193 siderophore_interactin 99.7 5.1E-17 1.1E-21 167.7 8.7 157 491-684 63-219 (235)
93 PRK12779 putative bifunctional 99.7 4.2E-16 9.1E-21 188.6 14.8 183 476-685 676-869 (944)
94 TIGR00333 nrdI ribonucleoside- 99.6 2.7E-15 5.8E-20 138.4 9.6 92 109-227 1-93 (125)
95 PRK12775 putative trifunctiona 99.6 3.3E-15 7.1E-20 182.4 12.3 171 477-685 28-203 (1006)
96 PRK11921 metallo-beta-lactamas 99.5 3E-14 6.5E-19 158.1 13.4 146 102-259 245-392 (394)
97 PRK02551 flavoprotein NrdI; Pr 99.5 3.6E-14 7.7E-19 135.4 11.2 140 104-255 1-145 (154)
98 PRK05452 anaerobic nitric oxid 99.5 7.7E-14 1.7E-18 157.9 13.7 146 103-261 250-397 (479)
99 PRK05569 flavodoxin; Provision 99.5 3.2E-13 6.9E-18 128.2 13.5 116 104-235 1-117 (141)
100 PRK05568 flavodoxin; Provision 99.5 3.2E-13 7E-18 128.3 13.1 114 104-235 1-116 (142)
101 PRK03600 nrdI ribonucleotide r 99.5 5.2E-13 1.1E-17 125.2 11.7 121 106-258 2-130 (134)
102 PLN02844 oxidoreductase/ferric 99.4 5.8E-13 1.3E-17 155.4 12.6 183 476-671 338-535 (722)
103 PLN02292 ferric-chelate reduct 99.4 7.8E-13 1.7E-17 154.0 13.1 179 477-671 352-546 (702)
104 PLN02631 ferric-chelate reduct 99.4 8.9E-13 1.9E-17 153.2 9.8 149 475-639 333-492 (699)
105 PRK06242 flavodoxin; Provision 99.3 3.2E-11 7E-16 115.6 11.1 108 105-236 1-109 (150)
106 PRK11104 hemG protoporphyrinog 99.1 5.7E-10 1.2E-14 110.2 9.8 87 105-207 1-87 (177)
107 PRK03767 NAD(P)H:quinone oxido 99.0 3.1E-09 6.7E-14 107.1 13.6 126 104-233 1-141 (200)
108 TIGR01755 flav_wrbA NAD(P)H:qu 99.0 3.2E-09 7E-14 106.7 13.6 125 106-233 2-140 (197)
109 PRK07116 flavodoxin; Provision 99.0 2.4E-09 5.2E-14 104.0 11.6 133 104-256 2-158 (160)
110 KOG3378 Globins and related he 98.9 4.2E-10 9.2E-15 113.4 2.6 179 476-688 180-371 (385)
111 PF07972 Flavodoxin_NdrI: NrdI 98.9 3.1E-09 6.7E-14 97.6 7.6 95 109-225 1-100 (122)
112 COG0426 FpaA Uncharacterized f 98.9 1.1E-08 2.4E-13 110.6 11.4 117 105-235 247-363 (388)
113 PF12724 Flavodoxin_5: Flavodo 98.8 3.1E-08 6.7E-13 94.4 9.8 86 108-209 1-86 (143)
114 PF08030 NAD_binding_6: Ferric 98.7 7.6E-08 1.7E-12 92.6 9.6 73 566-638 3-78 (156)
115 COG1780 NrdI Protein involved 98.6 1.9E-07 4.2E-12 85.7 9.8 124 106-260 2-133 (141)
116 PF03358 FMN_red: NADPH-depend 98.5 6.5E-07 1.4E-11 85.8 11.7 124 105-234 1-141 (152)
117 PF12641 Flavodoxin_3: Flavodo 98.5 5.4E-07 1.2E-11 87.3 9.6 96 108-227 1-98 (160)
118 COG4635 HemG Flavodoxin [Energ 98.5 3.3E-07 7.2E-12 86.3 6.9 88 105-207 1-88 (175)
119 KOG0039 Ferric reductase, NADH 98.3 3E-06 6.6E-11 99.5 11.3 196 476-687 381-633 (646)
120 PF12682 Flavodoxin_4: Flavodo 98.2 2.7E-06 5.8E-11 82.3 7.7 132 106-256 1-156 (156)
121 PRK10569 NAD(P)H-dependent FMN 98.0 0.00016 3.4E-09 72.4 16.1 120 105-233 1-133 (191)
122 PRK06567 putative bifunctional 98.0 1.2E-05 2.6E-10 96.5 8.7 83 477-579 819-908 (1028)
123 PRK06934 flavodoxin; Provision 98.0 0.0001 2.2E-09 75.0 13.4 134 105-256 60-217 (221)
124 PRK00170 azoreductase; Reviewe 97.8 0.00053 1.2E-08 68.9 15.9 156 104-261 1-196 (201)
125 TIGR03567 FMN_reduc_SsuE FMN r 97.8 0.00057 1.2E-08 67.2 14.5 121 106-235 1-134 (171)
126 PRK01355 azoreductase; Reviewe 97.8 0.00084 1.8E-08 67.7 15.8 159 104-263 1-195 (199)
127 PRK09739 hypothetical protein; 97.7 0.0014 3.1E-08 65.9 15.5 157 104-263 3-197 (199)
128 TIGR03566 FMN_reduc_MsuE FMN r 97.6 0.0013 2.8E-08 64.8 14.6 120 106-233 1-135 (174)
129 PF02525 Flavodoxin_2: Flavodo 97.5 0.0021 4.6E-08 64.5 15.1 154 105-260 1-199 (199)
130 PRK13556 azoreductase; Provisi 97.5 0.0047 1E-07 62.7 16.7 157 104-262 1-203 (208)
131 PF00970 FAD_binding_6: Oxidor 97.4 5.6E-05 1.2E-09 67.0 1.4 67 476-558 29-98 (99)
132 COG0655 WrbA Multimeric flavod 96.9 0.0092 2E-07 60.5 11.7 121 106-231 5-146 (207)
133 TIGR02690 resist_ArsH arsenica 96.5 0.056 1.2E-06 55.3 13.9 128 101-233 23-161 (219)
134 PRK04930 glutathione-regulated 96.1 0.36 7.7E-06 48.1 16.8 159 102-264 3-179 (184)
135 PRK13555 azoreductase; Provisi 96.0 0.37 8E-06 49.0 16.8 128 104-232 1-174 (208)
136 COG2375 ViuB Siderophore-inter 94.7 0.38 8.2E-06 50.3 11.9 165 489-696 84-250 (265)
137 COG0431 Predicted flavoprotein 93.2 1.1 2.4E-05 44.6 11.7 122 105-234 1-135 (184)
138 KOG3135 1,4-benzoquinone reduc 92.3 0.32 6.9E-06 46.8 6.1 101 105-209 2-117 (203)
139 PRK00871 glutathione-regulated 92.3 3.7 8E-05 40.6 13.9 152 107-262 2-169 (176)
140 cd06182 CYPOR_like NADPH cytoc 87.6 0.64 1.4E-05 49.1 4.4 42 320-361 2-44 (267)
141 COG2249 MdaB Putative NADPH-qu 87.1 12 0.00027 37.3 13.0 158 105-263 1-187 (189)
142 KOG0560 Sulfite reductase (fer 86.1 0.3 6.5E-06 54.1 0.9 62 203-264 1-70 (638)
143 PRK02261 methylaspartate mutas 82.6 36 0.00078 32.1 13.3 130 105-257 2-134 (137)
144 KOG1160 Fe-S oxidoreductase [E 81.5 1.6 3.4E-05 48.2 4.0 142 105-256 358-511 (601)
145 TIGR01501 MthylAspMutase methy 70.7 94 0.002 29.3 12.3 128 108-255 3-130 (134)
146 cd02072 Glm_B12_BD B12 binding 67.3 70 0.0015 29.9 10.6 115 109-237 2-116 (128)
147 PLN03116 ferredoxin--NADP+ red 67.2 11 0.00023 40.7 6.0 51 310-361 19-69 (307)
148 cd06208 CYPOR_like_FNR These f 64.9 13 0.00029 39.4 6.1 49 311-360 4-52 (286)
149 TIGR00640 acid_CoA_mut_C methy 63.3 1.1E+02 0.0023 28.8 11.1 112 106-237 2-113 (132)
150 PF08022 FAD_binding_8: FAD-bi 59.3 3.1 6.7E-05 37.3 0.0 50 475-537 28-82 (105)
151 PF08021 FAD_binding_9: Sidero 49.8 11 0.00023 34.7 1.9 54 489-557 64-117 (117)
152 cd02067 B12-binding B12 bindin 47.3 2.1E+02 0.0045 25.7 10.2 109 109-237 2-110 (119)
153 cd05566 PTS_IIB_galactitol PTS 43.0 78 0.0017 27.0 6.3 29 105-133 1-29 (89)
154 cd00578 L-fuc_L-ara-isomerases 40.8 3.7E+02 0.008 30.5 13.1 129 106-255 2-151 (452)
155 PF08357 SEFIR: SEFIR domain; 39.5 75 0.0016 29.9 6.1 64 105-168 1-67 (150)
156 TIGR02667 moaB_proteo molybden 38.8 24 0.00053 34.3 2.6 57 196-252 2-58 (163)
157 PRK09622 porA pyruvate flavodo 38.4 3E+02 0.0064 31.0 11.5 109 103-222 267-381 (407)
158 TIGR01917 gly_red_sel_B glycin 36.9 2.7E+02 0.0058 31.5 10.5 97 117-264 320-421 (431)
159 cd05563 PTS_IIB_ascorbate PTS_ 35.7 98 0.0021 26.1 5.7 40 106-145 1-40 (86)
160 PRK05928 hemD uroporphyrinogen 32.7 2.3E+02 0.0051 28.5 9.0 56 155-233 48-103 (249)
161 PF00970 FAD_binding_6: Oxidor 31.5 1E+02 0.0023 26.5 5.3 38 318-360 2-41 (99)
162 PF03908 Sec20: Sec20; InterP 31.2 46 0.001 29.0 2.9 20 57-76 72-91 (92)
163 PRK05907 hypothetical protein; 30.8 4.8E+02 0.01 28.2 11.2 126 106-261 19-151 (311)
164 PF06283 ThuA: Trehalose utili 30.6 1.5E+02 0.0033 29.8 7.1 75 106-188 1-80 (217)
165 TIGR01918 various_sel_PB selen 29.6 3.6E+02 0.0077 30.5 9.9 78 163-264 339-421 (431)
166 KOG4530 Predicted flavoprotein 28.5 72 0.0016 30.9 3.8 54 156-211 83-136 (199)
167 COG1182 AcpD Acyl carrier prot 28.4 6.4E+02 0.014 25.6 13.6 128 104-232 1-171 (202)
168 cd06578 HemD Uroporphyrinogen- 28.1 2.9E+02 0.0062 27.5 8.7 42 178-234 184-225 (239)
169 PF04954 SIP: Siderophore-inte 27.6 1.8E+02 0.0039 26.5 6.3 97 566-684 3-101 (119)
170 PRK15083 PTS system mannitol-s 26.8 2.4E+02 0.0052 33.8 8.8 31 103-133 377-407 (639)
171 cd00133 PTS_IIB PTS_IIB: subun 26.6 1.1E+02 0.0024 24.8 4.4 28 106-133 1-28 (84)
172 cd06200 SiR_like1 Cytochrome p 26.6 1.1E+02 0.0025 31.5 5.4 36 326-361 8-44 (245)
173 PRK10310 PTS system galactitol 26.5 1.2E+02 0.0026 26.5 4.8 29 106-134 4-32 (94)
174 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.4 2.3E+02 0.0051 26.2 7.2 71 107-188 17-87 (153)
175 cd01075 NAD_bind_Leu_Phe_Val_D 25.5 1E+02 0.0023 30.9 4.7 33 193-233 23-55 (200)
176 PF04689 S1FA: DNA binding pro 25.3 98 0.0021 25.2 3.4 24 55-78 18-42 (69)
177 cd00758 MoCF_BD MoCF_BD: molyb 24.5 49 0.0011 30.8 2.0 53 200-252 1-55 (133)
178 cd02071 MM_CoA_mut_B12_BD meth 24.5 5.4E+02 0.012 23.4 9.5 109 109-238 2-111 (122)
179 PF02826 2-Hacid_dh_C: D-isome 24.3 1.2E+02 0.0025 29.7 4.7 35 192-234 30-64 (178)
180 COG4123 Predicted O-methyltran 24.1 2.3E+02 0.0049 29.7 6.9 28 556-584 38-65 (248)
181 PRK07168 bifunctional uroporph 23.7 2.4E+02 0.0051 32.5 7.6 89 120-232 261-351 (474)
182 cd07371 2A5CPDO_AB The alpha a 23.5 3.3E+02 0.0072 28.6 8.3 104 118-228 86-205 (268)
183 PF09921 DUF2153: Uncharacteri 22.8 1.3E+02 0.0028 27.9 4.2 52 657-710 51-105 (126)
184 TIGR00853 pts-lac PTS system, 22.4 1.5E+02 0.0033 26.0 4.6 30 104-134 3-32 (95)
185 cd06268 PBP1_ABC_transporter_L 21.9 6.9E+02 0.015 25.1 10.4 96 104-214 135-230 (298)
186 PF02878 PGM_PMM_I: Phosphoglu 21.6 3.1E+02 0.0066 25.5 6.8 62 104-170 40-101 (137)
187 PRK13608 diacylglycerol glucos 21.5 1.5E+02 0.0032 32.9 5.4 42 103-144 4-46 (391)
188 COG1587 HemD Uroporphyrinogen- 21.4 2.7E+02 0.006 28.7 7.1 55 157-234 173-227 (248)
189 KOG0025 Zn2+-binding dehydroge 21.1 51 0.0011 35.2 1.5 63 346-419 95-160 (354)
190 COG3414 SgaB Phosphotransferas 20.8 2.7E+02 0.0059 24.5 5.8 58 104-170 1-58 (93)
191 PF07583 PSCyt2: Protein of un 20.7 3E+02 0.0065 28.0 6.9 38 404-442 21-60 (208)
192 cd05567 PTS_IIB_mannitol PTS_I 20.6 1.8E+02 0.0038 24.8 4.6 41 105-145 1-41 (87)
193 PF11272 DUF3072: Protein of u 20.5 2E+02 0.0044 23.0 4.3 40 666-706 9-53 (57)
194 cd06212 monooxygenase_like The 20.4 1.8E+02 0.0039 29.4 5.4 40 317-361 2-42 (232)
195 PRK05752 uroporphyrinogen-III 20.4 5.7E+02 0.012 26.4 9.2 56 155-234 51-106 (255)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=8.6e-113 Score=903.29 Aligned_cols=568 Identities=33% Similarity=0.599 Sum_probs=496.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
++++|+||||||||+++|+.|.+++.+++ ..+.|+.+|+|++ ++|.+..++||+|||+|+|++|+||..||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~--~~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRG--LQCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhcc--CCceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 47899999999999999999999999886 4568899999995 678899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHHHh
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 262 (715)
+|...+.+...|++++|||||||||+|++||.++|+++++|.+|||+.++++|+|||+. +++.+|+.|...+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988888889999999999999999999999999999999999999999999999954 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCcc--ccCCCCeeEEEeeeecccCCCCCCceeEEEE
Q 005072 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV--YDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340 (715)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 340 (715)
+............+ ....+.|++-...... . . ..+..+ ...+-| ++++.|+++++.++.+.++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~-~-----~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKAS-D-----F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhccccc-c-----C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 87511110001111 1122334433222110 0 0 001111 111222 78999999999999999999999
Q ss_pred EeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhcccccC
Q 005072 341 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 419 (715)
Q Consensus 341 di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp-p~tl~~~l~~~~Dl~~ 419 (715)
+|.++.+.|+|||.+.|+|.|+.+.|+++++.+||++++...+.....+. .+..+-+| |+|+++++.+|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999887766543221 12222578 9999999999999999
Q ss_pred CccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCC
Q 005072 420 SPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 499 (715)
Q Consensus 420 ~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsS 499 (715)
.|++.||..|++|++|+.|||||++++|++|.++|.+|+.+++||++|+|++|++.+.|++++++. +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred CCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEEecCCcchhH
Q 005072 500 SPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPF 579 (715)
Q Consensus 500 sp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPf 579 (715)
+|..+ .++++|++|.++|.....+.|+||+||.++.+|+ .+++.+++|++.+|.+...|+||||+|||||||
T Consensus 376 ~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPf 447 (574)
T KOG1159|consen 376 SPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPF 447 (574)
T ss_pred CCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccH
Confidence 99854 4999999999999999999999999999999987 488999999999999989999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcc
Q 005072 580 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 659 (715)
Q Consensus 580 rs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i 659 (715)
||++++|..+++ .+..||||||++++||+|.+||.+..+.+. +.|||||+++|.||||+|++.++.+|+++
T Consensus 448 Ra~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 448 RALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred HHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 999999997553 356999999999999999999998876543 45999999999999999999999999998
Q ss_pred -cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 660 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 660 -~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+.||+|||||++..|..+|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 519 ~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 519 DNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 589999999999899999999999999999999777776 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-110 Score=942.95 Aligned_cols=597 Identities=47% Similarity=0.789 Sum_probs=514.7
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChh
Q 005072 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (715)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdn 178 (715)
.....+.+++|+|||||||||.+|+.+++++ +++....+++.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 3456778999999999999999999999999 7776545566666666642 456899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005072 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (715)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (715)
++.|.+||.+.... ....++|+|||+||++|+|||++|+.+|++|+++||+|++.+|+|||+.+.|++|..|++.+|+
T Consensus 112 ~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~ 189 (645)
T KOG1158|consen 112 AEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLP 189 (645)
T ss_pred HHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhH
Confidence 99999999986433 3455899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecCCCccccc--cccCCCCCCccccCCCCeeEEEeeeecccCCCCCCcee
Q 005072 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCT 336 (715)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~ 336 (715)
++++.+..+... .++.......++............. ......+....++..+|+.+.++.+++|+++.++|+|+
T Consensus 190 ~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~ 266 (645)
T KOG1158|consen 190 ELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCI 266 (645)
T ss_pred hhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEE
Confidence 999987644221 1111111111111111000000000 00001112355778899999999999999989999999
Q ss_pred EEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhcc
Q 005072 337 HLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYA 415 (715)
Q Consensus 337 hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp-p~tl~~~l~~~~ 415 (715)
|+++++.+++++|+||||++|+|.|+.+.|++++++|+++++..+.++....+++.......+.||| |||+|++|++|+
T Consensus 267 ~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~l 346 (645)
T KOG1158|consen 267 HLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYL 346 (645)
T ss_pred EEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988888776554422112245788999 999999999999
Q ss_pred cccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCccccc
Q 005072 416 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYY 495 (715)
Q Consensus 416 Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~Y 495 (715)
||+++|+|++|+.||+||+|+.||++|+.|+|++|+.+|..|+....++++|||.+||+++||+.++++. +|+++||+|
T Consensus 347 di~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~Y 425 (645)
T KOG1158|consen 347 DITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYY 425 (645)
T ss_pred cccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Ccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875 599999999
Q ss_pred ccCCCCCCCCCeEEEEEEEEEeeCCCC-cccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEEecCC
Q 005072 496 SISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 574 (715)
Q Consensus 496 SIsSsp~~~~~~i~itv~~v~~~~~~g-r~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImIa~GT 574 (715)
||||||..+++++|+++.++.+.++.| +.++|+||+||.++.+++... .++.++.+.|+||.|+.+||||||+||
T Consensus 426 SIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGT 501 (645)
T KOG1158|consen 426 SISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGT 501 (645)
T ss_pred ccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCC
Confidence 999999999999999999998888775 778899999999999988632 147778999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhcCC--CCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCccccchhhhhc
Q 005072 575 GLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEK 651 (715)
Q Consensus 575 GIAPfrs~lq~~~~~~~~~~--~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~-~~k~yVq~~l~~~ 651 (715)
||||||||+|+|..+.+.+. ..+ +|||||||+.+.||||++||+++.+.+.++++.+||||++ +.|.||||+|++.
T Consensus 502 GiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~ 580 (645)
T KOG1158|consen 502 GIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREY 580 (645)
T ss_pred cchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHH
Confidence 99999999999998876542 234 8999999999999999999999999999999999999998 7899999999999
Q ss_pred hhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 652 SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 652 ~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+++||++| .++++|||||++++|+++|.++|.+|+++.+++++++|++++++|++++||++|||
T Consensus 581 ~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 581 ADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 99999998 56999999999877999999999999999999999999999999999999999999
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=4.1e-106 Score=923.27 Aligned_cols=540 Identities=29% Similarity=0.507 Sum_probs=469.3
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
..+++|+|+|||||||||.+|++|++.+.+.+ ..++++++++|+. .+|.+++.+||++||||+|+|||||..
T Consensus 59 ~~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~ 130 (600)
T PRK10953 59 AEMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVA 130 (600)
T ss_pred CCCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHH
Confidence 34788999999999999999999999998876 4568999999975 468889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (715)
||+||.... ...|++++||||||||++|++||.++|.+|++|+++||+|+++++.+|. ++|++|++|.+++|++|.
T Consensus 131 F~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~ 206 (600)
T PRK10953 131 LHKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALK 206 (600)
T ss_pred HHHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHH
Confidence 999997543 3469999999999999999999999999999999999999999986654 579999999999999998
Q ss_pred hhhCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceeEEEEE
Q 005072 262 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 341 (715)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~d 341 (715)
+...... ...... . . .... ......|+..+|+.++|+.|++|+.++++++|+|||||
T Consensus 207 ~~~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~d 263 (600)
T PRK10953 207 SRAPAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEID 263 (600)
T ss_pred hhcCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEe
Confidence 7653110 000000 0 0 0000 00112466789999999999999999999999999999
Q ss_pred eCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhcccccCCc
Q 005072 342 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSP 421 (715)
Q Consensus 342 i~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p 421 (715)
|++++++|+|||||+|||+|+++.|+++|++||+++++.+.+. + .++|++++|++|+||+.+
T Consensus 264 l~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~- 325 (600)
T PRK10953 264 LGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN- 325 (600)
T ss_pred cCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-
Confidence 9999999999999999999999999999999999999987664 1 157999999999999875
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCC
Q 005072 422 KKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP 501 (715)
Q Consensus 422 ~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp 501 (715)
++.+|+.+++++.+++ |+.|. .+++.+.+|+. +++++|||++|| .+++++||+++ +|+++||+|||||+|
T Consensus 326 ~~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp 395 (600)
T PRK10953 326 TANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQ 395 (600)
T ss_pred cHHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCC
Confidence 7789999999998754 44443 25667777764 699999999998 68999999986 588999999999999
Q ss_pred CCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEec-CCcccCCCCCCCeEEEecCCcchhH
Q 005072 502 RVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPF 579 (715)
Q Consensus 502 ~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~-~~F~Lp~~~~~piImIa~GTGIAPf 579 (715)
...+++++|||+++.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+|||||||
T Consensus 396 ~~~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPf 468 (600)
T PRK10953 396 AEVENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPF 468 (600)
T ss_pred CCCCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHH
Confidence 87789999999988765 4578889999999986 55554 57888875 5899998888999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcc
Q 005072 580 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 659 (715)
Q Consensus 580 rs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i 659 (715)
|||+|++...+. .++++||||||++..||+|++||++|.+.|.+++++++|||++.+|+||||+|.++.+++|+++
T Consensus 469 rsflq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l 544 (600)
T PRK10953 469 RAFMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWI 544 (600)
T ss_pred HHHHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999987543 2789999999997779999999999999999999999999998889999999999999999999
Q ss_pred cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 660 SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 660 ~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 545 ~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 545 NDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred HCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999778999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=9.5e-104 Score=908.40 Aligned_cols=538 Identities=35% Similarity=0.610 Sum_probs=469.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
.++|+|+|||||||||.+|+.|++++.+.+ ..+++.++++|+. +++.+++.+||++||||+|+||+||..||
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 678999999999999999999999998876 5578999999985 45888999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (715)
+||...+ ...|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|++|.+++|+.|...
T Consensus 130 ~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhh
Confidence 9998643 3469999999999999999999999999999999999999999987765 47899999999999999866
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEeC
Q 005072 264 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 343 (715)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 343 (715)
+... ... +.+.+.. .. .......|+..+|+.+.|+.+++|+..+++++|+||||||+
T Consensus 206 ~~~~-----~~~------~~~~~~~---~~---------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGS-----AST------PSLSETP---AR---------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCc-----cCC------Ccceecc---cc---------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 5211 001 1111100 00 00112346678999999999999999999999999999999
Q ss_pred CCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhcccccCCccH
Q 005072 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 423 (715)
Q Consensus 344 ~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k 423 (715)
+++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+. ++|
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NTK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CCH
Confidence 99999999999999999999999999999999999987663 1 15799999999999998 579
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC
Q 005072 424 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 503 (715)
Q Consensus 424 ~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~ 503 (715)
.+|+.||++++|++.++ +.+ +++.|.+|+. +++++|||.+|| +++++|||+++ +|+++||+|||||+|..
T Consensus 325 ~~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCccc
Confidence 99999999999986544 332 5778888885 799999999999 89999999986 48899999999999987
Q ss_pred CCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEec-CCcccCCCCCCCeEEEecCCcchhHHH
Q 005072 504 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRG 581 (715)
Q Consensus 504 ~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~-~~F~Lp~~~~~piImIa~GTGIAPfrs 581 (715)
++++++|+|++|.+. ..|+.+.|.||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 788999999988664 5678899999999998 66655 57888864 579999888899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcccC
Q 005072 582 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE 661 (715)
Q Consensus 582 ~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~ 661 (715)
|+|++...+. .++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++..++++++.+
T Consensus 468 flq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~ 543 (597)
T TIGR01931 468 FMQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQE 543 (597)
T ss_pred HHHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhC
Confidence 9999987643 278999999999556999999999999999998999999998778999999999999999998878
Q ss_pred CcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 662 GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 662 ~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 544 ~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 544 GAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 899999995489999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-100 Score=862.33 Aligned_cols=541 Identities=37% Similarity=0.660 Sum_probs=483.3
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
....++|+||||||||+.+|+.+++++...+ ..+.+.++++|+.. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 5788999999999999999999999999887 56789999999963 344447899999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (715)
+++|... +...|.+++|+||||||++|++||.++|.++++|.++||+++.+++.+|+. +++++...|...+++.+..
T Consensus 118 ~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 9999864 355799999999999999999999999999999999999999999999876 7899999999999999987
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEe
Q 005072 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (715)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (715)
........ ...++. .+ .. ...+....++.+.+..|++|+...++|+|+|++||+
T Consensus 195 ~~~~~~~~--~~~~~~--~~---------------------~~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAA--PAQVAT--SP---------------------QS-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccc--cccccc--hh---------------------cc-cccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 66432110 000110 00 00 122334567789999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhcccccCCcc
Q 005072 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (715)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~ 422 (715)
++++++|+|||+|+|||+|+++.|+++|..||+++++.++++ + .+.++.++|.+|+|+++.|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998666332 1 1679999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCC
Q 005072 423 KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPR 502 (715)
Q Consensus 423 k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~ 502 (715)
|+++..|+.|+.+++.++.|+.++ ...|..|.. +++++|+|++||++++|++++++. +|++.||+|||||+|.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCC
Confidence 999999999999999999999886 455666665 899999999999999999999985 5999999999999999
Q ss_pred CCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecC-CcccCCCCCCCeEEEecCCcchhHHH
Q 005072 503 VAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRG 581 (715)
Q Consensus 503 ~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~-~F~Lp~~~~~piImIa~GTGIAPfrs 581 (715)
.++++||+||.+|.+... ++.+.|+||+||.++...|+ .++++++.+ +|++|.++.+||||||+|||||||||
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRa 457 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRA 457 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHH
Confidence 999999999999988777 55899999999999988443 689999876 89999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcccC
Q 005072 582 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE 661 (715)
Q Consensus 582 ~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~ 661 (715)
|+|+|...+.. |++|||||||+.+.||||++||++|.+.|.++++.+||||++++|.||||+|++++++||+++.+
T Consensus 458 fvq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ 533 (587)
T COG0369 458 FVQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEE 533 (587)
T ss_pred HHHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHC
Confidence 99999987754 68999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 662 GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 662 ~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+++|||||++..|+++|.++|.+|+.+.|+++.++|++++++|++++||++|||
T Consensus 534 ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 534 GAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 999999997799999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=2.6e-78 Score=671.55 Aligned_cols=395 Identities=53% Similarity=0.934 Sum_probs=356.9
Q ss_pred CCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCC-CCcEEEEecCCCCC
Q 005072 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 390 (715)
Q Consensus 312 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 390 (715)
..+|+.++|+.+++|+++ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357899999999999988 8999999999999889999999999999999999999999999999 899988874332
Q ss_pred CCCCCCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 005072 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 469 (715)
Q Consensus 391 ~~~~~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl 469 (715)
....+.|+| |||++++|++|+||+++|+|.+|+.||.||+|++||++|.+|++ +|+++|.+|+...+++++|+|
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL 153 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVL 153 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHH
Confidence 123456899 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhCCCCC---CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCC-----
Q 005072 470 SEFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK----- 541 (715)
Q Consensus 470 ~~fps~~---~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~----- 541 (715)
.+||+++ +|++.|++. +|+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 154 ~~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 232 (416)
T cd06204 154 QDFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPP 232 (416)
T ss_pred HhCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccc
Confidence 9999999 999999986 5999999999999998788999999999988888888999999999999875110
Q ss_pred ----------CCCCceeeEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcc
Q 005072 542 ----------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD 611 (715)
Q Consensus 542 ----------~~~~~~v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D 611 (715)
...++.++++++.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|
T Consensus 233 ~~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d 312 (416)
T cd06204 233 TPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDED 312 (416)
T ss_pred cccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcc
Confidence 0012368899999999999887899999999999999999999987654333335799999999998459
Q ss_pred cccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCC
Q 005072 612 YIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 691 (715)
Q Consensus 612 ~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~ 691 (715)
++|++||++|++.+.+++++++|||++..++|||++|.+..+.+++++.++++||||||+..|+++|.++|.+|++++++
T Consensus 313 ~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 313 FIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred cchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence 99999999999988888999999998878999999999888888888777899999999434999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 692 LDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 692 ~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+++++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=1.2e-76 Score=654.96 Aligned_cols=381 Identities=39% Similarity=0.709 Sum_probs=342.6
Q ss_pred EeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCC--CCcEEEEecCCCCCCCCCCCC
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 397 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~~~~ 397 (715)
|..+++|+++++.++|+||+||+++++++|+|||||+|+|+|+++.|++++++||++ +|+.+.++.....+. .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999999889999999999999999999999999999999 889888874221111 1235
Q ss_pred CCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 005072 398 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 476 (715)
Q Consensus 398 ~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~ 476 (715)
++.+|| |+|++++|++|+||+++|+|++|+.||+||+|++||++|.+|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 778899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccC-----CCCCCCCCceeeEE
Q 005072 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 551 (715)
Q Consensus 477 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~-----~g~~~~~~~~v~v~ 551 (715)
+|++.+++. +|+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999986 599999999999999876899999999875432 699999999988 554 57788
Q ss_pred Ee-cCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhh--cCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCC
Q 005072 552 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 627 (715)
Q Consensus 552 v~-~~~F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~--~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~ 627 (715)
++ .+.|.+|.+ ..+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||++|++.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 85 567999876 67899999999999999999999976431 122348999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005072 628 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 703 (715)
Q Consensus 628 ~~l~~a~Sr~~~---~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~ 703 (715)
+++++||||++. .++||||++.++.+.+++++ .++++||||||++.|+++|+++|.+|+.+.++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 48999999999999999876 57899999999778999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005072 704 LQMTGRYLRDVW 715 (715)
Q Consensus 704 l~~~gRy~~DvW 715 (715)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=3.3e-76 Score=652.73 Aligned_cols=386 Identities=41% Similarity=0.738 Sum_probs=340.6
Q ss_pred EeeeecccCCCCCCceeEEEEEeCC-CCCccCCCCeEEEccCCCHHHHHHHHHHcCCC--CCcEEEEecCCCCCCCCC--
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 394 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~-- 394 (715)
|+.+++|+++.++|+|+||+||+++ ++++|+|||||+|+|+|+++.|++++++||+. .++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 69999999999999999999999999999984 577787775333211100
Q ss_pred CCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 005072 395 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 473 (715)
Q Consensus 395 ~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fp 473 (715)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|..|++ ++++|.+|+...+++++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 012334565 99999999999999999999999999999999999999999996 889999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CcccccccchhhhccCCCCCCCCCceeeEE
Q 005072 474 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 474 s~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
++++|++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.++
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999985 59999999999999987789999999988766543 4567899999999988876 47778
Q ss_pred Eec-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh----hcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC
Q 005072 552 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 626 (715)
Q Consensus 552 v~~-~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~----~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~ 626 (715)
++. +.|++|.++.+|+||||+||||||||||||++.... ..+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 764 589999888899999999999999999999986542 112345899999999999559999999999999999
Q ss_pred CcEEEEEEecCCC-CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005072 627 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 704 (715)
Q Consensus 627 ~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l 704 (715)
+++++++|||++. .++||||+|.++.+.+++++ .++++|||||| +.|+++|.++|.+|+++.++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9899999999864 58999999999999999987 67999999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 005072 705 QMTGRYLRDVW 715 (715)
Q Consensus 705 ~~~gRy~~DvW 715 (715)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 9
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.2e-76 Score=650.71 Aligned_cols=378 Identities=43% Similarity=0.785 Sum_probs=346.4
Q ss_pred EeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCC
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 399 (715)
|+.+++|+.++++++|+||+|++++++++|+|||||+|+|+|+++.|++++++||+++++.+.++... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999888999999999999999999999999999999999999887433 12346
Q ss_pred CCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 005072 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 478 (715)
Q Consensus 400 ~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p 478 (715)
.||| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.++ .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6889 999999999999999999999999999999999999999999999999999988 789999999999999999
Q ss_pred hHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcc
Q 005072 479 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 558 (715)
Q Consensus 479 ~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~ 558 (715)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++.+|+ .+.+.++.|.|+
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999999877789999999998888888889999999999987765 578999999999
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005072 559 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 638 (715)
Q Consensus 559 Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~ 638 (715)
+|.+..+|+||||+||||||||||+|++......+...++++||||||+++.|++|++||++|++.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999998654333345899999999999459999999999999999889999999998
Q ss_pred CCccccchhhhhchhHHHhcccCC-cEEEEeCCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 639 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 639 ~~k~yVq~~l~~~~~~i~~~i~~~-~~iYvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
..++|||+++.++.+.+++++.++ ++|||||| +. |+++|.++|.+++.+.+++++++|++++++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888877555 49999999 55 999999999999999999999999999999999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.9e-73 Score=627.70 Aligned_cols=374 Identities=36% Similarity=0.620 Sum_probs=334.2
Q ss_pred EeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCC
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 399 (715)
|+.+++|++++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++.... ..+
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~~ 72 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------ATG 72 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CCC
Confidence 6789999999999999999999975 8999999999999999999999999999999999998875221 234
Q ss_pred CCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 005072 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 478 (715)
Q Consensus 400 ~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p 478 (715)
.|+| |+|++++|++|+||+++|+|.+|+.||.||+|+.+|++|..++ +++|.+++...++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 5778 9999999999999999999999999999999999999999885 4679999999999999999999999999
Q ss_pred hHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-cccccccchhhhccCCCCCCCCCceeeEEE--ecC
Q 005072 479 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQS 555 (715)
Q Consensus 479 ~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g-r~~~G~~S~~L~~l~~g~~~~~~~~v~v~v--~~~ 555 (715)
+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||+++.+|+ .+.+.+ +.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCCC
Confidence 99999865 99999999999999867789999999887766554 567899999999887766 356554 457
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 556 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 556 ~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+ +++++||
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEec
Confidence 899998778999999999999999999999976543333447899999999994599999999999986654 8999999
Q ss_pred cCCCC-ccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCe
Q 005072 636 REGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGRY 710 (715)
Q Consensus 636 r~~~~-k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~v~~l~~~gRy 710 (715)
|++.. ++|||++|.+..+.+++++.++++|||||| ++|+++|.++|.+|+.+++ +++.++|++|+++|+++|||
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry 379 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRY 379 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCe
Confidence 98754 899999999888888887778899999999 6799999999999999999 99999999999999999999
Q ss_pred EEeeC
Q 005072 711 LRDVW 715 (715)
Q Consensus 711 ~~DvW 715 (715)
++|||
T Consensus 380 ~~dvw 384 (384)
T cd06206 380 ATDVF 384 (384)
T ss_pred eeecC
Confidence 99999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=5.6e-71 Score=602.60 Aligned_cols=355 Identities=40% Similarity=0.670 Sum_probs=316.6
Q ss_pred EeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCC
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 399 (715)
|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6678999999999999999999998899999999999999999999999999999999887531
Q ss_pred CCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CCC
Q 005072 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SAK 476 (715)
Q Consensus 400 ~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fp--s~~ 476 (715)
++| |+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|+++|.+ .++++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 245 89999999999999987 45568899999999888875 57887764 589999999999 999
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEec-C
Q 005072 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-S 555 (715)
Q Consensus 477 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~-~ 555 (715)
+|+|||++. +|+++||+|||||+|..++++++|+|+++.+.+. ++.+.|+||+||+++...|+ .+.++++. +
T Consensus 132 ~~~gq~l~l-~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~ 204 (360)
T cd06199 132 LTAEELLDL-LRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPNP 204 (360)
T ss_pred CCHHHHHHh-CcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecCC
Confidence 999999986 4889999999999998778899999998866553 46688999999998763333 57888765 5
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 556 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 556 ~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
.|++|.++.+|+||||+||||||||||+|++..... .++++||||||++..|++|++||++|++.+.+++++++||
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 799998878999999999999999999999876442 3789999999998559999999999999898889999999
Q ss_pred cCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 636 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 636 r~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
|++..++||||++.++.+.+++++.++++||||||+..|+++|+++|.+|+++.++++.++|++|+++|+++|||++|||
T Consensus 281 r~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 281 RDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred cCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99888899999999998899888877899999999448999999999999999999999999999999999999999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=3.5e-70 Score=614.49 Aligned_cols=370 Identities=38% Similarity=0.652 Sum_probs=325.7
Q ss_pred CCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEec
Q 005072 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 385 (715)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 385 (715)
+...++..+|+.++|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|++++++||++++..+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 3445677899999999999999999999999999999989999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCH
Q 005072 386 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 465 (715)
Q Consensus 386 ~~~~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl 465 (715)
.++|++++|++|+||+++| +.+|+.|+.++++++ +++|+.|++....+.. ....++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 1579999999999999876 788999999988766 7888888764333221 134689
Q ss_pred HHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCC
Q 005072 466 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSND 544 (715)
Q Consensus 466 ~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~ 544 (715)
+|+|++||++++|++++++. +|+++||+|||||+|..++++++|+|+++.+. ..++.+.|+||+||++ +.+|+
T Consensus 291 ldvL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~-~~~~~~~G~~S~~L~~~l~~Gd---- 364 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYE-IGSRLRLGVASTFLGERLAPGT---- 364 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeec-cCCccccchhhHHHHhcCCCCC----
Confidence 99999999999999999985 59999999999999987789999999988665 3567788999999985 55554
Q ss_pred CceeeEEEec-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHH
Q 005072 545 CSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 623 (715)
Q Consensus 545 ~~~v~v~v~~-~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 623 (715)
.+.|+++. ++|++|.++.+|+||||+||||||||||+|++...+. .++++||||||+...|++|++||++|.+
T Consensus 365 --~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 365 --RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred --EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 47777754 3499998778999999999999999999999876542 2789999999887669999999999999
Q ss_pred cCCCcEEEEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005072 624 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 703 (715)
Q Consensus 624 ~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~ 703 (715)
.+.+++++++|||++..|+||||+|.++..++++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~ 518 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAE 518 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99988899999999888999999999998999998888899999999667889999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005072 704 LQMTGRYLRDVW 715 (715)
Q Consensus 704 l~~~gRy~~DvW 715 (715)
|+++|||++|||
T Consensus 519 l~~~gRY~~Dvw 530 (530)
T PRK06214 519 LKKAGRYQADVY 530 (530)
T ss_pred HHHCCCEEEecC
Confidence 999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=8e-47 Score=385.20 Aligned_cols=217 Identities=45% Similarity=0.812 Sum_probs=186.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999997553
Q ss_pred CCCCCCCCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 005072 389 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 467 (715)
Q Consensus 389 ~~~~~~~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~d 467 (715)
. .....||| |||++++|++|+||+++|+|.+|+.||+||+|++||++|++|++.+|+++|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 24567899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchh
Q 005072 468 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 532 (715)
Q Consensus 468 vl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~ 532 (715)
+|.+||++++|+++|++. +|+++||+|||||||..+++.++|||++|.+.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999986 5999999999999999999999999999999889999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.2e-38 Score=345.37 Aligned_cols=273 Identities=24% Similarity=0.456 Sum_probs=225.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|...+|+.++|+.|.+++..+....++||+|+.++ .+.|++|.+++|.|+..
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~-------------------------- 136 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGI-------------------------- 136 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCc--------------------------
Confidence 477889999999999999988778899999998764 78999999999865310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
|.. |
T Consensus 137 ---------------------------~~~-------------------------------g------------------ 140 (367)
T PLN03115 137 ---------------------------DKN-------------------------------G------------------ 140 (367)
T ss_pred ---------------------------CCC-------------------------------C------------------
Confidence 000 0
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 545 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~ 545 (715)
.+..+|+|||||+|.. .++.++|+|+.+.+.+..|....|+||+||+++.+|+
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd----- 196 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 196 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC-----
Confidence 1124699999999853 2468999999876666667778899999999988876
Q ss_pred ceeeEEEecCCcc-cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHHHH
Q 005072 546 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 623 (715)
Q Consensus 546 ~~v~v~v~~~~F~-Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 623 (715)
.+.|.+|.|.|. +|.++.+|+||||+|||||||+|||+++....... ...++++||||||+.+ |++|.+||++|++
T Consensus 197 -~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 197 -EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred -EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 477888877764 56566789999999999999999999876543211 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhccc-CCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005072 624 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 697 (715)
Q Consensus 624 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~-~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 697 (715)
... .++++.++||++. .++|||++|.++.+++++++. .+++||+||| ++|+++|.++|.++....| + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 754 7799999999764 578999999999888988774 5789999999 9999999999999998875 3 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005072 698 ESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 698 ~~~v~~l~~~gRy~~DvW 715 (715)
++++++|+++|||+.|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3.5e-36 Score=315.87 Aligned_cols=232 Identities=48% Similarity=0.881 Sum_probs=198.2
Q ss_pred CCChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~ 554 (715)
...+|||+.+.+|. ..+|+|||+|+|...++.++|+|+.+......+..+.|.+|+||+++.+|+ .+.+.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45689998765443 468999999999755689999998876655556667899999999988776 46788888
Q ss_pred C-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccC-CcccccHHHHHHHHHcCCCcEEEE
Q 005072 555 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR-KMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 555 ~-~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~-~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
| .|.++.+..+|+||||+|||||||++|+++++.....+...++++||||+|+. + |++|.+||++|++.+..+++++
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~del~~~~~~~~~~~~~~ 183 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYREELQEALKDGALTRLDV 183 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHHHHHHHHhCCCcceEEE
Confidence 8 89998776789999999999999999999988642111223789999999999 6 9999999999999888889999
Q ss_pred EEecCCCC-ccccchhhhhchhHHHhcccCCcEEEEeCCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Q 005072 633 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 710 (715)
Q Consensus 633 a~Sr~~~~-k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy 710 (715)
++||+... ++||++.+.+..+.+++.+.+++.||+||| ++ |+++|.++|.+++.++++++.++|+.++++|++.|||
T Consensus 184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 99997653 789999988777777766656779999999 78 9999999999999999999999999999999999999
Q ss_pred EEeeC
Q 005072 711 LRDVW 715 (715)
Q Consensus 711 ~~DvW 715 (715)
++|+|
T Consensus 263 ~~~~~ 267 (267)
T cd06182 263 VEDVW 267 (267)
T ss_pred EEecC
Confidence 99999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=5.3e-33 Score=295.14 Aligned_cols=189 Identities=34% Similarity=0.685 Sum_probs=158.9
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE-ecCCcccCCCCCCCeEEE
Q 005072 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 570 (715)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v-~~~~F~Lp~~~~~piImI 570 (715)
+|+|||+|+|. ++.++|+|+.+ +.|.||+||+++.+|+. +.+.+ +.+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~------v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGDT------IKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcCE------EEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 47899888642 46999999999877763 56665 46789876 446899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhh
Q 005072 571 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 650 (715)
Q Consensus 571 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 650 (715)
|+|||||||++|++++.. .++++||||+|+++.|++|++||++|.+.+.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998548999999999999888888899999875 48999999887
Q ss_pred chhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 651 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 651 ~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+++ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 76666666667899999999 8999999999999998764 2 3888999999999998
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=3.8e-34 Score=297.01 Aligned_cols=211 Identities=33% Similarity=0.519 Sum_probs=174.1
Q ss_pred CCChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccC-CCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-PMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~-~g~~~~~~~~v~v~v~ 553 (715)
..-+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+.. +.| ..|.||+||++.. +|+ .+.+..|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd------~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA------SVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC------EEEEEec
Confidence 44579998765442 5789999999985 4789998876522 112 3599999999864 544 4677776
Q ss_pred -cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 554 -QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 554 -~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
++.|.+|. ..+|+||||+|||||||+||++++...+ .++++||||+|+.+.|++|.+||++|++.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 46788875 5689999999999999999999987643 1578999999998448999999999999998889999
Q ss_pred EEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005072 633 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 711 (715)
Q Consensus 633 a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~ 711 (715)
++||++..++||++.+.+..+.+++++..+++||+||| + +|+++|.+.|.+++.+. .+++|+++|||+
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~ 241 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGEE----------AVEALLAAGRYR 241 (245)
T ss_pred EEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeE
Confidence 99998777899999998877777665556789999999 7 99999999999999753 489999999999
Q ss_pred EeeC
Q 005072 712 RDVW 715 (715)
Q Consensus 712 ~DvW 715 (715)
+|+|
T Consensus 242 ~d~~ 245 (245)
T cd06200 242 RDVY 245 (245)
T ss_pred EecC
Confidence 9999
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.3e-33 Score=302.45 Aligned_cols=227 Identities=29% Similarity=0.450 Sum_probs=178.7
Q ss_pred CChHHHHHHHcCCC---------cccccccCCCCCCC---CCeEEEEEEEEEeeCCCCc----ccccccchhhhccCCCC
Q 005072 477 PPLGVFFAAIVPRL---------QPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGR----VHKGLCSTWMKNSLPME 540 (715)
Q Consensus 477 ~p~~~~l~~~~p~l---------~pR~YSIsSsp~~~---~~~i~itv~~v~~~~~~gr----~~~G~~S~~L~~l~~g~ 540 (715)
+-+|||+.+.+|.. ..|+|||||+|... ..+++|+|+.+.+..+... ...|.+|+||+++.+|+
T Consensus 57 f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd 136 (307)
T PLN03116 57 YWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD 136 (307)
T ss_pred eecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC
Confidence 34688876654421 37999999999532 2379999987654433211 25799999999977765
Q ss_pred CCCCCceeeEEEecCCccc-CC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCCEEEEEeeccCCcccccHHH
Q 005072 541 KSNDCSWAPIFVRQSNFKL-PA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDE 617 (715)
Q Consensus 541 ~~~~~~~v~v~v~~~~F~L-p~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dE 617 (715)
.+.|..|.|.|.+ |. +..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+|
T Consensus 137 ------~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~de 209 (307)
T PLN03116 137 ------KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDE 209 (307)
T ss_pred ------EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHH
Confidence 4778888888876 43 4567999999999999999999988764321 11136899999999997 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCC
Q 005072 618 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 692 (715)
Q Consensus 618 L~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~ 692 (715)
|++|++.+. .++++.++||++. .++||++.|.+..+.++..+..++.+|+||| ++|++++.+.|.+++.+.| +
T Consensus 210 L~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~ 287 (307)
T PLN03116 210 FERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E 287 (307)
T ss_pred HHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c
Confidence 999998875 6789999999754 3679999888766666555556789999999 9999999999999988764 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005072 693 DSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 693 ~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+|+++++.|+++|||++|||
T Consensus 288 ---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 ---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ---cHHHHHHHHHHcCceEEecC
Confidence 36789999999999999999
No 19
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.8e-32 Score=303.68 Aligned_cols=270 Identities=24% Similarity=0.418 Sum_probs=214.0
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|+..+|..+.|+.+++++.......++||.|+.++..+.|+||.++.|.++...
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------- 190 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------- 190 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC-------------------------
Confidence 4677889999999999998776677899999998766688999988877442100
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
. .|
T Consensus 191 ----------------------------~-------------------------------~g------------------ 193 (411)
T TIGR03224 191 ----------------------------A-------------------------------SG------------------ 193 (411)
T ss_pred ----------------------------c-------------------------------CC------------------
Confidence 0 00
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCC---CCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 545 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~---~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~ 545 (715)
.+..+|+|||+|+|... .+.++|+|+.+. ....|+.+.|.+|+||+++.+|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC-----
Confidence 11246999999987421 147999998764 24556677899999999988876
Q ss_pred ceeeEEEecCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHc
Q 005072 546 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 624 (715)
Q Consensus 546 ~~v~v~v~~~~-F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 624 (715)
.+.+..|.|. |.+|..+.+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||+++.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 4678888776 6677555689999999999999999999987643221 237999999999998 99999999999865
Q ss_pred CCCcEEEEEEecCCC-CccccchhhhhchhHHHhccc-CCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005072 625 GALSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 702 (715)
Q Consensus 625 ~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~i~~~i~-~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~ 702 (715)
. .++++++||++. .++|||+.+.+....+++++. .++.||+||| ++|+++|.+.|.++..+.+ +. .+++++
T Consensus 326 ~--~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~ 398 (411)
T TIGR03224 326 F--IDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEP 398 (411)
T ss_pred C--ceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHH
Confidence 4 357779998643 689999999988777777663 4689999999 9999999999999997653 33 567999
Q ss_pred HHHHCCCeEEeeC
Q 005072 703 NLQMTGRYLRDVW 715 (715)
Q Consensus 703 ~l~~~gRy~~DvW 715 (715)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
No 20
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=4.4e-33 Score=295.53 Aligned_cols=226 Identities=30% Similarity=0.476 Sum_probs=180.3
Q ss_pred CChHHHHHHHcCC--------CcccccccCCCCCC---CCCeEEEEEEEEEeeCCCC-cccccccchhhhccCCCCCCCC
Q 005072 477 PPLGVFFAAIVPR--------LQPRYYSISSSPRV---APSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSND 544 (715)
Q Consensus 477 ~p~~~~l~~~~p~--------l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~g-r~~~G~~S~~L~~l~~g~~~~~ 544 (715)
..+|||+.+..|. ..+|+|||||+|.. +++.++|+|+.+...++.+ ..+.|.+|+||+++.+|+
T Consensus 41 ~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd---- 116 (286)
T cd06208 41 YLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD---- 116 (286)
T ss_pred ccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC----
Confidence 3568888654342 23699999999853 2468999998875544433 455699999999987766
Q ss_pred CceeeEEEecCCcccC-CCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCCEEEEEeeccCCcccccHHHHHHHH
Q 005072 545 CSWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFV 622 (715)
Q Consensus 545 ~~~v~v~v~~~~F~Lp-~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~ 622 (715)
.+.+..+.|.|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|.+||++++
T Consensus 117 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~ 193 (286)
T cd06208 117 --DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYP 193 (286)
T ss_pred --EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHH
Confidence 47788888887654 34567999999999999999999998765211 11236899999999998 999999999999
Q ss_pred HcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhccc-CCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005072 623 QSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 696 (715)
Q Consensus 623 ~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~-~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 696 (715)
++.. .+++++++||++. .++||++.+.+....+++.+. .+..||+||| ++|+++|.+.|.+++. +..+
T Consensus 194 ~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~ 267 (286)
T cd06208 194 KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLA 267 (286)
T ss_pred HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHH
Confidence 8753 5789999998753 478999999887777776554 4469999999 8999999999999987 2367
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 005072 697 AESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 697 a~~~v~~l~~~gRy~~DvW 715 (715)
|++++++|+++|||..|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999
No 21
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=1.7e-33 Score=268.59 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++|+|+|||||||||.+|++|++.+.+.+ ..++++++.+ .+++.+++.+||++||||+|+||+|+..|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g--~~~~~~~~~~--------~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAG--FSTETLHGPL--------LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcC--CceEEeccCC--------HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998776 4456776643 245788999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (715)
+||++. ...|++++||||||||+.|++||.+++.+|++|+++||++++|++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~---~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ---KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc---CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999864 235999999999999999999999999999999999999999999999864 36899999999988754
No 22
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=2.6e-33 Score=268.36 Aligned_cols=147 Identities=22% Similarity=0.224 Sum_probs=122.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
++|.|+|||||||||.+|++|++.+.+.+. .+.++ ......+ ..+. ..+.+||++||||+|+||+|+..||+
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~--~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGF--EAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCC--ceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 579999999999999999999999987652 23332 2222211 1111 23789999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCC--CCchhhHHHHHHHHHHHHH
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 261 (715)
||.+.. ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .++|++|.+|++.+|+.|.
T Consensus 73 ~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 998642 2269999999999999999 8999999999999999999999999999987 4689999999999998874
No 23
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=5.4e-33 Score=266.08 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++|+|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 468999999999999999999999998775 4567888876542 12345789999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (715)
++|++. ...|++++|||||||||+|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999863 236999999999999999999999999999999999999999999999855 478999999999 7654
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=1e-26 Score=221.22 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=122.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHH-HHHHHHH
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~-~F~~~L~ 187 (715)
|+|+|+|||||.+|+.|++++.+++ ..++++++++++.+ ..++..++.++|++||||+|+||+|+. .|++|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999875 56899999998842 246889999999999999999999998 6777776
Q ss_pred hhc--CCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHH
Q 005072 188 EQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 252 (715)
Q Consensus 188 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W 252 (715)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.|++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 531 12346899999999999999988999999999999999999999999999876 789999999
No 25
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.92 E-value=1.3e-24 Score=221.39 Aligned_cols=188 Identities=27% Similarity=0.458 Sum_probs=145.4
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.+..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34689998765553 57899999999863 47899988754 2599999999987765 477888
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|.|.++....+|+||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++++.+..+++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP----GGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCC----CCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 889987665667899999999999999999999876531 26899999999997 9999999999998877788999
Q ss_pred EEecCCCCccccchhhhhchhHHHhc-ccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 633 AFSREGPTKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 633 a~Sr~~~~k~yVq~~l~~~~~~i~~~-i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+++|++....+.++.+.......... ...+..+|+||| ++|++.+.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99987654433333332111111111 135789999999 89999999998764
No 26
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.92 E-value=1.4e-24 Score=225.75 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=138.4
Q ss_pred CCChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+-++ . ...|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEec
Confidence 3467999765432 2 2369999999985 35788888654 4599999999887776 466766
Q ss_pred ec-CCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcC-CCcE
Q 005072 553 RQ-SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 629 (715)
Q Consensus 553 ~~-~~F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~ 629 (715)
+. |.|.++.. ..+|+||||+|||||||+||++++...+. .++++||||+|+.+ |++|.+||+++++.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 65 55677644 34799999999999999999999764332 26899999999997 999999999998875 3568
Q ss_pred EEEEEecCCC---Cccccchhhhhch-hHHHh-cc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 630 LIVAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 630 l~~a~Sr~~~---~k~yVq~~l~~~~-~~i~~-~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+++++||++. .+++|++.+.+.. ..... .+ .++..+|+||| ++|++++.+.|.+.
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 8999998643 3567776553321 11111 11 25688999999 89999999887653
No 27
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.92 E-value=1.8e-24 Score=221.45 Aligned_cols=184 Identities=20% Similarity=0.318 Sum_probs=146.4
Q ss_pred CCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEe
Q 005072 475 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 475 ~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~ 553 (715)
.+..+|||+.+.+|....|+|||+|.|. ..+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.+..|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~-~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPH-EDGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCC-CCCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecC
Confidence 3457899987666666789999999986 347899988753 35889999986 66665 4677788
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+..+++||||+|||||||++++++...... ..+++|+||+|+.. |++|.+||++++++...++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 89998876667899999999999999999999876532 26899999999997 99999999999988777888888
Q ss_pred EecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|++++ .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 988543 45788776654311 1 24678999999 89999999988654
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.91 E-value=1.6e-24 Score=229.86 Aligned_cols=179 Identities=17% Similarity=0.342 Sum_probs=137.4
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEEe
Q 005072 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 571 (715)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImIa 571 (715)
.|+|||+|+|. ..+.++|+|+.........+...|.+|+||+++.+|+ .+.|..|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 49999999986 3478999887643211111345799999999987766 467778889998863 468999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccccc
Q 005072 572 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQ 645 (715)
Q Consensus 572 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yVq 645 (715)
+|||||||++|+++++..... ..+++||||+|+.+ |++|.+||+++++.+..+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999988764321 25899999999997 99999999999988777788888887531 457888
Q ss_pred hhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 646 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 646 ~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 7765532 11111 23568999999 99999999988765
No 29
>PRK07308 flavodoxin; Validated
Probab=99.91 E-value=6.4e-24 Score=203.05 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=117.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.|+++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 4567888887764 34778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCC--chhhHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 256 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~--~e~~f~~W~~~l 256 (715)
++|.+. .+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|...|
T Consensus 73 ~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 999864 48899999999999999999999999999999999999888776654322 233444555554
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.91 E-value=5.7e-24 Score=219.81 Aligned_cols=184 Identities=24% Similarity=0.365 Sum_probs=143.8
Q ss_pred CCChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 456899987655654 5899999999863 47899988643 4589999997 566665 4677778
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+..+|+||||+|||||||++++++....+.. ++++||||+|+.+ |++|.+||+++++....++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~----~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT----RKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC----CcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 899988765568999999999999999999998765321 6899999999997 99999999999987777788888
Q ss_pred EecCCC------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+||+.. .++|+++.+.+.... ..++..+|+||| ++|++++.+.|.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 998532 356777655432110 124678999999 99999999998764
No 31
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.91 E-value=4.8e-24 Score=231.84 Aligned_cols=183 Identities=18% Similarity=0.292 Sum_probs=145.1
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~ 554 (715)
.+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..|.
T Consensus 131 ~~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~ 194 (339)
T PRK07609 131 QYLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPL 194 (339)
T ss_pred ccCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCc
Confidence 3457999876656666899999999863 47899988743 45899999974 66655 46788889
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|.|.++....+|+||||+|||||||++|++++...+. .++++||||+|+.+ |+++.++|++|+++...++++.++
T Consensus 195 G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~ 269 (339)
T PRK07609 195 GTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVV 269 (339)
T ss_pred eeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEe
Confidence 9999886667899999999999999999999876442 26899999999997 999999999998877777888899
Q ss_pred ecCCC------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 635 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 635 Sr~~~------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
||+.+ .++||++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 270 s~~~~~~~~~g~~G~v~~~~~~~~~---~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 270 SDALDDDAWTGRTGFVHQAVLEDFP---D--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred cCCCCCCCccCccCcHHHHHHhhcc---c--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 98421 45778776654311 1 14578999999 99999999988764
No 32
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=5.7e-24 Score=219.07 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=141.0
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhh-hccCCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L-~~l~~g~~~~~~~~v~v~v~~ 554 (715)
...+|||+.+.+|....|+|||+|.|. .++.++|+|+.+ ..|..+.++ .++.+|+ .+.|..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~-~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPR-EKGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCC-CCCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCC
Confidence 456899986655666789999999985 347899887643 224445555 5666655 47788888
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|.|.++.+..+|+||||+||||||+++|++++..... ..+++|+||+|+.+ |.+|.+||++++++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 9998876566899999999999999999999876532 26899999999998 999999999999887777898888
Q ss_pred ecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHH-HHH
Q 005072 635 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 685 (715)
Q Consensus 635 Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L-~~i 685 (715)
|+++. .++||++.+.+... + ..+..+|+||| ++|+++|.+.| .+.
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 87543 46778776654311 1 13568999999 89999999988 554
No 33
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=6.3e-24 Score=218.39 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=143.6
Q ss_pred CCChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhcc-CCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l-~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++. .+|+ .+.|..+
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECC
Confidence 356799987666766 7899999999863 47899988643 358899999874 5554 4677778
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+..+++||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..++++++
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 88888765556899999999999999999999876421 1236899999999997 99999999999988777788888
Q ss_pred EecCCC--------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~--------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|+++. .++|+++.+.+... ....+..||+||| ++|++++.+.|.+.
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~~~----~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEATLG----DRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhhcc----CCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 887642 23566665544211 1124679999999 89999999888664
No 34
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=8e-24 Score=235.10 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=139.3
Q ss_pred CChHHHHHHHcC--C--C-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeE
Q 005072 477 PPLGVFFAAIVP--R--L-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 550 (715)
Q Consensus 477 ~p~~~~l~~~~p--~--l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v 550 (715)
..+|||+.+.+| . . .+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v 247 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLEL 247 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEE
Confidence 357888865443 1 1 349999999986 46788887642 45999999987 77765 4677
Q ss_pred EEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005072 551 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 630 (715)
Q Consensus 551 ~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l 630 (715)
..|.|.|.++.+..+|+||||+|||||||++|++++..... .++++||||+|+.+ |++|++||+++++.+..+++
T Consensus 248 ~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~ 322 (399)
T PRK13289 248 AAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKA 322 (399)
T ss_pred EcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEE
Confidence 88889999987667899999999999999999999876432 26899999999998 99999999999988777789
Q ss_pred EEEEecCCCC----ccccc-hhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 631 IVAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 631 ~~a~Sr~~~~----k~yVq-~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.++|++... ..|++ .++.+ +.+...+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9999985421 11221 22211 1222233 24789999999 99999999988654
No 35
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=9.6e-24 Score=234.89 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=142.2
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEE
Q 005072 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (715)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piIm 569 (715)
...|+|||+|.|.. ++.++|+|+.+......++.+.|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999863 468999998765544445667899999999987776 46788888999876 35689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005072 570 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 643 (715)
Q Consensus 570 Ia~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~y 643 (715)
||+|||||||+||+++.+..... .++++||||+|+.+ |++|.+||+++++....+++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 99999999999999988764321 26899999999997 99999999999988777889999987532 3577
Q ss_pred cchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 644 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 644 Vq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
|++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 887765431 11111 24578999999 99999999988654
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=1.4e-23 Score=216.38 Aligned_cols=184 Identities=22% Similarity=0.305 Sum_probs=143.4
Q ss_pred CCChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|. ..+|+|||+|+|.. .+.+.|+|+.. ..|.+|+||++ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 45689998765553 35799999999863 46888888643 35889999998 76765 4678888
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+..+++||||+|||||||++|++++..... ..+++||||+|+.+ |++|.+||+++++....++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 89999876556899999999999999999999876432 26799999999997 99999999999988777788889
Q ss_pred EecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+||++. .++++++.+.+.. .+ ......+|+||| ++|++++.+.|.+.
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~l---~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALREDL---AS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHhh---cc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 987532 3566666554321 11 124578999999 89999999988754
No 37
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.90 E-value=1.4e-23 Score=215.42 Aligned_cols=181 Identities=23% Similarity=0.346 Sum_probs=143.0
Q ss_pred CCChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 456799987655654 4799999998863 7888887643 45999999998 76665 4677777
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.. .+|++|||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++.+....++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 888887644 489999999999999999999987643 236899999999997 99999999999988777888899
Q ss_pred EecCCC---CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~---~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|++.. .++|+++.+.+.. +...+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~ 215 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQ 215 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 998543 4568887665431 1124578999999 89999999998753
No 38
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=9.1e-24 Score=215.86 Aligned_cols=183 Identities=22% Similarity=0.301 Sum_probs=144.4
Q ss_pred CCChHHHHHHHcCCC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l--~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +.+|+ .+.|..
T Consensus 23 ~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~g 86 (224)
T cd06187 23 PFWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSG 86 (224)
T ss_pred CcCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeC
Confidence 345789987665544 3799999999863 47888888642 35999999998 77765 467888
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|.|.++.+..+++||||+|||||||++|++++.... ...+++|+|++|+.+ |++|.+||+++.+....+++++
T Consensus 87 P~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 161 (224)
T cd06187 87 PYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVP 161 (224)
T ss_pred CccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEE
Confidence 88999887655689999999999999999999987643 126899999999997 9999999999998877778888
Q ss_pred EEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 633 AFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 633 a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++++++. .++|+++.+.+... + ..++.+|+||| ++|++++.+.|.+.
T Consensus 162 ~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 162 VVSHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred EeCCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 8887542 46788877654311 1 24689999999 99999999988654
No 39
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.90 E-value=1.4e-23 Score=215.82 Aligned_cols=186 Identities=19% Similarity=0.313 Sum_probs=138.1
Q ss_pred CChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEE
Q 005072 477 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 477 ~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v 552 (715)
..+|||+.+.++ . ..+|+|||+|.|. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 467898865433 2 2479999999986 57899888643 3488999998 577765 467888
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|.|.++.....++||||+||||||+++|+++...... ..+++||||+|+.+ |++|.+||++++++...+++++
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 889999876666899999999999999999999876432 26899999999997 9999999999998777778999
Q ss_pred EEecCCCCccccchhhhhchhHHHhccc--CCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 633 AFSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 633 a~Sr~~~~k~yVq~~l~~~~~~i~~~i~--~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++||++....+.+++.....+....++. .++.+|+||| ++|++++.+.|.+.
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~ 219 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKEL 219 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 9998653322222211111111111221 3579999999 89999999888653
No 40
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.90 E-value=1.9e-23 Score=227.10 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=143.9
Q ss_pred CCChHHHHHHHcCCCc-ccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~-pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~ 553 (715)
.+.+|||+.+.+|... .|+|||+|+|. ..+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~-~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPN-ATNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCC-CCCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcC
Confidence 3468999876556543 79999999986 357899988753 45889999975 66665 4678888
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++. ..+|+||||+|||||||++|++++...+. .++++||||+|+++ |++|.+||++|+++...++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 89999864 35899999999999999999999876432 26899999999997 99999999999988888899988
Q ss_pred EecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++.+. .++||++.+.+.. +......+|+||| ++|++++.+.|.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~~-----l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKAQ-----LRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHhh-----cCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 887532 4578887765421 1123467999999 99999999998654
No 41
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.90 E-value=1.7e-23 Score=232.55 Aligned_cols=180 Identities=18% Similarity=0.340 Sum_probs=139.2
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEE
Q 005072 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (715)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImI 570 (715)
..|+|||+|+|.. .+.++|+|+.+.......+.+.|.+|+||+++.+|+ .+.+..|.|.|.++. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999863 478999998753322223356799999999987776 477888899998864 46899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Ccccc
Q 005072 571 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 644 (715)
Q Consensus 571 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yV 644 (715)
|+|||||||++|+++.+..... ..+++||||+|+++ |++|.+||+++.+....+++++++|++++ .+++|
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 9999999999999987754321 25899999999997 99999999999988878888888887532 35678
Q ss_pred chhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 645 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 645 q~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++.+.+.. +.+.. ..++.+|+||| ++|++++.+.|.+.
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 77665321 11111 24678999999 99999999888654
No 42
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=2.1e-23 Score=215.90 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=143.4
Q ss_pred CChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE-
Q 005072 477 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 551 (715)
Q Consensus 477 ~p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 551 (715)
..+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECc
Confidence 45789876544432 4699999999863 7888887643 3599999999988776 46677
Q ss_pred EecCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHc-CCCcE
Q 005072 552 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 629 (715)
Q Consensus 552 v~~~~F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-~~~~~ 629 (715)
.+.|.|.++.. ..++++|||+|||||||++++++...... .++++||||+|+.+ |++|.+||+++++. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER----FDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC----CCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 77889998765 45899999999999999999999875432 26899999999997 99999999999887 55668
Q ss_pred EEEEEecCCCC---ccccchhhhhc-hhHHHhc--ccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 630 LIVAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 630 l~~a~Sr~~~~---k~yVq~~l~~~-~~~i~~~--i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
++.+++|++.. ++|+++.+... ....... ...+..||+||| ++|++++.+.|.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 224 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKG 224 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88888887543 57888766521 1111111 124679999999 899999999887654
No 43
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.90 E-value=2.9e-23 Score=213.55 Aligned_cols=183 Identities=22% Similarity=0.347 Sum_probs=142.5
Q ss_pred CCChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 446889987655543 5799999999863 47899988643 35899999997 76765 4678888
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++....+++||||+|||||||+++++++..... .++++|+||+|+.. |++|.+||+++++....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 89998876556899999999999999999999876532 26799999999997 99999999999987777778888
Q ss_pred EecCCC------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|++.. ..+++++.+.+.. .+ .++..+|+||| ++|++++.+.|.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 887542 2456666543321 11 14678999999 89999999988754
No 44
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.90 E-value=2.6e-23 Score=225.42 Aligned_cols=184 Identities=16% Similarity=0.277 Sum_probs=139.7
Q ss_pred CChHHHHHHHcCC--CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p~--l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v~ 553 (715)
+.+|||+.+-+|. ...|+|||+|.|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.+..|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 4579987654443 23599999999863 46799988743 4589999997 576765 4667778
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++....+|+||||+|||||||++|+++...... ..+++|+||+|+.+ |++|.+||+++++....+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 89999876667899999999999999999998876432 26899999999997 99999999999987766677776
Q ss_pred EecCCCCccccchhhhhchhHHHhccc--CCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~~k~yVq~~l~~~~~~i~~~i~--~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++++ .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66543 345566655432 1112121 3678999999 99999999988765
No 45
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.90 E-value=2.9e-23 Score=220.72 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=137.5
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCC
Q 005072 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 556 (715)
Q Consensus 477 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~ 556 (715)
..+|||+.+.+|....|+|||+|+|. .++.++|+|+. .|.+|+||+++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~-~~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPT-RKGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCC-CCCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 46899987655655569999999986 34789988863 288999999887766 4667777777
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 557 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 557 -F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
|.++....+|+||||+|||||||++|+++++.... ..++++|+||+|+.+ |++|++||+++++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 66654445799999999999999999999876431 126899999999997 9999999999988777778889999
Q ss_pred cCCCC---------------ccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 636 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 636 r~~~~---------------k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
|++.. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333322221 11 24578999999 99999999988765
No 46
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.89 E-value=9.4e-23 Score=208.27 Aligned_cols=184 Identities=19% Similarity=0.241 Sum_probs=139.1
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~ 554 (715)
...+|||+.+.+|....|+|||+|+|.. .+.++|+|+.. ..|.+|+||++ +.+|+ .+.|..|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCc
Confidence 3467999876666667899999999863 36788887643 35899999998 46655 46778888
Q ss_pred CCcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 555 SNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 555 ~~F~Lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
|.|.+.. ...++++|||+|||||||+++++++..... .++++||||+|+.+ |++|++||+++++....++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 8887653 456799999999999999999999876432 26899999999997 99999999999987666788888
Q ss_pred EecCCCCcc-ccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGPTKE-YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~~k~-yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++++.... +..+.+.+. +. .+..+..+|+||| ++|++++.+.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred EccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 888643321 111112111 11 1235789999999 99999999998764
No 47
>PRK05713 hypothetical protein; Provisional
Probab=99.89 E-value=9.2e-23 Score=219.23 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=133.5
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecC
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 555 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~ 555 (715)
.+.+|||+.+.++....|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.++.+|+. +.+..+.|
T Consensus 118 ~~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~g 181 (312)
T PRK05713 118 RYRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRG 181 (312)
T ss_pred CcCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCC
Confidence 3467999875445556899999999863 47889888643 45999999988887763 55555654
Q ss_pred -CcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 556 -NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 556 -~F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.++.+ ..+|+||||+|||||||+||++++.+.+. .++++|+||+|+.+ |++|.+||++|++....++++.+
T Consensus 182 g~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 256 (312)
T PRK05713 182 GALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELV 256 (312)
T ss_pred CceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEE
Confidence 5666644 46899999999999999999999876542 26899999999998 99999999999987766777766
Q ss_pred EecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++ ++++.+.+. .. ...+..+|+||| ++|++++.+.|.+.
T Consensus 257 ~~~------~~~~~l~~~----~~-~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 257 TAA------QLPAALAEL----RL-VSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred ECc------chhhhhhhc----cC-CCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 653 233333211 11 124578999999 99999999998654
No 48
>PRK12359 flavodoxin FldB; Provisional
Probab=99.89 E-value=4.5e-22 Score=194.14 Aligned_cols=144 Identities=19% Similarity=0.356 Sum_probs=120.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|++.|+|+|+|||||.+|++|++.+.. ..++++++++++. +++..++++||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 589999999999999999999998732 2368889988774 457899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCC-ch-hHHHHHHHHHHHHHHHcCCccccc-----------------------cccc
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLG 239 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~l~~-----------------------~g~g 239 (715)
.|.+. .|+|+++||||+||+ .| ++||.+++.++++|.+.||+.+.. +.+.
T Consensus 71 ~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 98764 599999999999998 48 899999999999999999984432 2233
Q ss_pred CCCCC--chhhHHHHHHHHHHHHHhh
Q 005072 240 DDDQC--IEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 240 D~~~~--~e~~f~~W~~~l~~~L~~~ 263 (715)
++++. .++++++|.++|.+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 33332 6899999999998877644
No 49
>PRK06703 flavodoxin; Provisional
Probab=99.88 E-value=4.9e-22 Score=191.13 Aligned_cols=146 Identities=19% Similarity=0.192 Sum_probs=122.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++++|+|+|+||||+.+|+.|++++...+ ..++++++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 568999999999999999999999998765 4577888887663 34778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC---CchhhHHHHHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~L 260 (715)
++|... .+++++|+|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...+
T Consensus 73 ~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 999753 3789999999999999999999999999999999999887655443322 33456778888876655
Q ss_pred Hh
Q 005072 261 DN 262 (715)
Q Consensus 261 ~~ 262 (715)
++
T Consensus 148 ~~ 149 (151)
T PRK06703 148 AQ 149 (151)
T ss_pred Hh
Confidence 43
No 50
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=2e-22 Score=206.68 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=137.9
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEec
Q 005072 477 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 477 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~ 554 (715)
..+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCC
Confidence 35789986555544 4799999999863 47899988643 45889999965 56655 46777888
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHc-CCCcEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVA 633 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-~~~~~l~~a 633 (715)
|.|.++. ..+++||||+|||||||+++++++..... .++++||||+|+++ |++|.+||+++++. ...++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAGT----KRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9998864 35789999999999999999999876432 26799999999997 99999999999865 355678888
Q ss_pred EecCCC------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|++.. .++++++.+.+. +..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 887532 235666655432 135689999999 89999998888654
No 51
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.88 E-value=1.9e-22 Score=209.46 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=138.5
Q ss_pred CCChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceee
Q 005072 476 KPPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 549 (715)
Q Consensus 476 ~~p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~ 549 (715)
...+|||+.+.++ . ...|+|||+|.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 3457888765543 2 3579999999985 34788877532 35999999998 77766 466
Q ss_pred EEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005072 550 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 629 (715)
Q Consensus 550 v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~ 629 (715)
|..|.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+++ |++|.+||+++++.+..++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 777889999886556899999999999999999999876422 26899999999997 8999999999988766778
Q ss_pred EEEEEecCCCC--------ccccchhhhhchhHHHh-cccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 630 LIVAFSREGPT--------KEYVQHKMMEKSSDIWN-MLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 630 l~~a~Sr~~~~--------k~yVq~~l~~~~~~i~~-~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+++++|++... .++++.. .+.+ ....+..+|+||| ++|++++.+.|.+.
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred EEEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99999986432 2333321 1222 1245789999999 89999999988654
No 52
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.88 E-value=2.1e-22 Score=206.77 Aligned_cols=186 Identities=18% Similarity=0.288 Sum_probs=137.1
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|. ...|+|||+|.|. ..+.++|+|+.. ..|.+|.||+ ++.+|+ .+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEE
Confidence 34678888654442 2469999999986 346799888643 3588999997 576665 46777
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
.+.|.|.++.....++||||+|||||||++++++....+. .++++||||+|+.+ |++|.+||+++.++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 8889999875556899999999999999999999876432 26799999999997 999999999999876666888
Q ss_pred EEEecCCCC-ccccchhhhhchhHHHhcc--cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 632 VAFSREGPT-KEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 632 ~a~Sr~~~~-k~yVq~~l~~~~~~i~~~i--~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++.++++.. ..+.++++.+. .+.+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EEEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 888875431 22222333211 111222 13468999999 99999999888653
No 53
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.88 E-value=2.4e-22 Score=209.68 Aligned_cols=182 Identities=21% Similarity=0.318 Sum_probs=140.5
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecC
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 555 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~ 555 (715)
+..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcC
Confidence 4568999876656555699999999863 4789988863 288899999877765 467777877
Q ss_pred C-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 556 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 556 ~-F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
. |.++....+|+||||+||||||+++|++++.+.... .++++|||++|+.+ |++|++||+++.+. ..+++.+++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~---~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRED---YGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhcccc---CCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 7 666543568999999999999999999999875311 26899999999998 99999999999987 556788888
Q ss_pred ecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 635 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 635 Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
|++.. ..+++++.+.+.. ....+..||+||| +.|++++.+.|.+..
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~G 213 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKLG 213 (253)
T ss_pred CCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 87542 3466766554431 0125679999999 999999999987653
No 54
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.88 E-value=1.6e-22 Score=209.58 Aligned_cols=182 Identities=23% Similarity=0.365 Sum_probs=139.1
Q ss_pred CChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEE
Q 005072 477 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 477 ~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v 552 (715)
..+|||+.+.+| . ..+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +.+|+ .+.+..
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEEC
Confidence 457899865443 2 34799999998852247899988753 34889999986 66665 467778
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|.|.++.+..+++||||+||||||+++++++....+ ..++++||||+|+.+ |.+|.+||+++.+++..+++++
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88899998765689999999999999999999987643 126899999999997 9999999999987777678888
Q ss_pred EEecCCCCccccchhhhhchhHHHhcc--cCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 633 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 633 a~Sr~~~~k~yVq~~l~~~~~~i~~~i--~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
.+|++ ..++++...+.+ +.+ ..+..+|+||| ++|++++.+.|.+..
T Consensus 186 ~~s~~-~~~g~~~~~~l~------~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~G 233 (243)
T cd06216 186 LYTRE-ELDGRLSAAHLD------AVVPDLADRQVYACGP-PGFLDAAEELLEAAG 233 (243)
T ss_pred EEcCC-ccCCCCCHHHHH------HhccCcccCeEEEECC-HHHHHHHHHHHHHCC
Confidence 88876 234555432211 121 13579999999 899999999887643
No 55
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.87 E-value=4.3e-22 Score=209.60 Aligned_cols=143 Identities=31% Similarity=0.562 Sum_probs=123.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
.+-.|||+||||||+++|+.+++.+.+.. ..++++|++ |... +++ +++++|+++|+.+|+|| +..|++
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~------d~p-en~~~~lv~~~~~~~~~--~d~~~~ 114 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDF------DVP-ENALYFLVLPSYDIDPP--LDYFLQ 114 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCcc------CCC-cceEEEEEecccCCCCc--HHHHHH
Confidence 34489999999999999999999999864 346889998 7653 355 78888888888899999 889999
Q ss_pred HHHhhcC----CCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHH
Q 005072 185 WFTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 259 (715)
Q Consensus 185 ~L~~~~~----~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~ 259 (715)
||++..+ ++..|++++||||||||+.| ++||..||++|+++..|||+|++|+|+||.|. ..+++|+..+...
T Consensus 115 ~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~ 191 (601)
T KOG1160|consen 115 WLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAET 191 (601)
T ss_pred HHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHH
Confidence 9998653 46679999999999999997 99999999999999999999999999999873 4456999999888
Q ss_pred HHh
Q 005072 260 LDN 262 (715)
Q Consensus 260 L~~ 262 (715)
|+.
T Consensus 192 Lk~ 194 (601)
T KOG1160|consen 192 LKD 194 (601)
T ss_pred HcC
Confidence 774
No 56
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=3.8e-22 Score=203.19 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=131.9
Q ss_pred CCChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+ ...|..|.||.++.+|+ .+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~--------~~~g~~s~~l~~l~~G~------~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY--------PDHDGVTEQLGRLQPGD------TLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc--------CCCCcHhHHHHhCCCCC------EEEEE
Confidence 45789998654442 3579999999986 37899888753 11266799999988876 46777
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
.|.|.|.++ .|+||||+|||||||+++++++...+. ..+++|+||+|+.+ |++|.+||++|.. .+++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 788888763 579999999999999999999886432 25789999999997 9999999999852 3567
Q ss_pred EEEecCCCCccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 632 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 632 ~a~Sr~~~~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++||++. ..|.++++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 77888653 2444554432 1222333 23578999999 89999999988664
No 57
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.87 E-value=6.1e-22 Score=216.47 Aligned_cols=188 Identities=19% Similarity=0.324 Sum_probs=137.1
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+| ....|+|||+|+|. ++.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 3467999876543 12469999999984 47899988754 3489999997 566655 46777
Q ss_pred EecCCcccCCCC--CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC-Cc
Q 005072 552 VRQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LS 628 (715)
Q Consensus 552 v~~~~F~Lp~~~--~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~ 628 (715)
.|.|.|.++.+. .+++||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 788899886542 3789999999999999999999876432 26899999999997 9999999999987654 46
Q ss_pred EEEEEEecCCCCccccchhhhh-ch-hHHHhcc--cCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 629 QLIVAFSREGPTKEYVQHKMME-KS-SDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 629 ~l~~a~Sr~~~~k~yVq~~l~~-~~-~~i~~~i--~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
+++.++|++.....+.++++.. .. +.+.++. .....+|+||| ++|++++.+.|.+..
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 230 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLG 230 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 7888889864332222333211 11 1111111 23468999999 999999999997653
No 58
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.87 E-value=8e-22 Score=203.00 Aligned_cols=183 Identities=21% Similarity=0.338 Sum_probs=137.1
Q ss_pred CChHHHHHHHcC--C-C-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEE
Q 005072 477 PPLGVFFAAIVP--R-L-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 551 (715)
Q Consensus 477 ~p~~~~l~~~~p--~-l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~ 551 (715)
..+|||+.+.+| . . ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 456899866554 1 1 2499999999863 46899988743 34889999987 55655 46777
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
.|.|.|.++....++++|||+||||||+++++++...... .++++|+||+|+.+ |.+|.+||.+++++...++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 8888898865446789999999999999999999876532 26899999999997 999999999999876666888
Q ss_pred EEEecCCC-----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 632 VAFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 632 ~a~Sr~~~-----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.+++|+.. .++++...+.+. +.. ...+..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIAE---LVP-PLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHHh---hCC-CccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88888621 234444332211 111 125689999999 99999999988764
No 59
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.87 E-value=1e-21 Score=203.00 Aligned_cols=187 Identities=22% Similarity=0.363 Sum_probs=137.2
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|. ..+|+|||+|.|.. +.++|.|+.+ ..|.+|.||. ++.+|+ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 45689998765542 36799999998763 4788887643 3589999997 566665 46788
Q ss_pred EecCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC-CcE
Q 005072 552 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 629 (715)
Q Consensus 552 v~~~~F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~ 629 (715)
.+.|.|.++.+ ...++||||+|||||||+++++++..... .++++|+||+|+.. |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 88899988765 57899999999999999999999876432 26899999999997 9999999999987653 556
Q ss_pred EEEEEecCCCCccccchhhhhc-hhHHH-hcc--cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 630 LIVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 630 l~~a~Sr~~~~k~yVq~~l~~~-~~~i~-~~i--~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+..++++++....+..+++.+. ..... +++ .++..||+||| +.|++++.+.|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7778887644322122232211 11111 111 34679999999 89999999988664
No 60
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.87 E-value=7e-22 Score=212.37 Aligned_cols=185 Identities=11% Similarity=0.149 Sum_probs=129.7
Q ss_pred CCChHHHHHHHcC-C-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceee
Q 005072 476 KPPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 549 (715)
Q Consensus 476 ~~p~~~~l~~~~p-~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~ 549 (715)
.+.+||++.+..+ . ...|+|||+|+|.. ++.++|+|+.+ ..|.+|+||+++.+|+. +.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EE
Confidence 4567888764323 1 24699999999963 57899998753 56999999999888764 44
Q ss_pred EEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--CCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC-
Q 005072 550 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA- 626 (715)
Q Consensus 550 v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~- 626 (715)
+..+.+.|.++.+..+|+||||+|||||||++|+++.++.+.. .....+++|+||+|+.+ |++|++||+++++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 4333334444444457999999999999999999998765321 11225899999999997 9999999999988654
Q ss_pred CcEEEEEEecCCC------CccccchhhhhchhHHHhccc-CCcEEEEeCCchhhHHHHHHH
Q 005072 627 LSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 681 (715)
Q Consensus 627 ~~~l~~a~Sr~~~------~k~yVq~~l~~~~~~i~~~i~-~~~~iYvCGpa~~M~~~V~~~ 681 (715)
.++++.++|++.. ..++|.+.+... +..... ....+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5678888886421 235555443211 111011 2357999999 9999999654
No 61
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=6.8e-22 Score=201.16 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=133.1
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|. ...|+|||+|.|. ..+.++|+|+. .|.+|++|. ++.+|+ .+.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEE
Confidence 34679998765553 5689999999886 34689988863 277899999 677665 46777
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
.|.|.|.++.. .++++|||+||||||++++++++..... .++++|+||+|+.+ |++|.+||+++.+.. .++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 78899998765 6899999999999999999999876432 26899999999998 999999999998876 55677
Q ss_pred EEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 632 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 632 ~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+..++.+. +......+.. .. ....+..+|+||| ++|++++++.|.+.
T Consensus 157 ~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 157 VIDSPSDG-RLTLEQLVRA----LV-PDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EEeCCCCc-ccchhhhhhh----cC-CCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 66654332 1111111100 00 0124679999999 89999999988764
No 62
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.86 E-value=1.5e-21 Score=202.94 Aligned_cols=173 Identities=20% Similarity=0.295 Sum_probs=131.2
Q ss_pred CCChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|. ..+|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.|.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~ 85 (246)
T cd06218 24 AAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVL 85 (246)
T ss_pred cCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEE
Confidence 34578888765553 35799999998853 47888887642 77899999988766 46778
Q ss_pred EecCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005072 552 VRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 630 (715)
Q Consensus 552 v~~~~-F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l 630 (715)
.|.|. |.++. ...++||||+|||||||+++++++...+ ++++|||++|+.+ |.+|++||+++.. ++
T Consensus 86 gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~ 152 (246)
T cd06218 86 GPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EV 152 (246)
T ss_pred ecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cE
Confidence 88775 77764 5689999999999999999999887622 6899999999998 9999999998852 23
Q ss_pred EEEEecCC--CCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 631 IVAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 631 ~~a~Sr~~--~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
.+ +++++ ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+..
T Consensus 153 ~~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~G 203 (246)
T cd06218 153 YV-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERG 203 (246)
T ss_pred EE-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 32 23332 2457888866554221 14689999999 899999999997653
No 63
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.86 E-value=2.2e-21 Score=202.58 Aligned_cols=182 Identities=18% Similarity=0.296 Sum_probs=133.5
Q ss_pred CChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEE
Q 005072 477 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 477 ~p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v 552 (715)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++. ..|..|+||+ ++++|+ .+.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEec
Confidence 46788887655533 6799999999974 36788888643 3499999999 777766 477878
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
+.|.|.++..+..|++||++|||||||+||+++....+ . .+++|+|++|+.+ |..|+|| +.++.+......+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 89999998767779999999999999999999987654 2 5799999999998 9999999 88887765433333
Q ss_pred EEecCCCCccccchhhhhchhHHHhcccCC-cEEEEeCCchhhHHHHHHHHHHHHHH
Q 005072 633 AFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQE 688 (715)
Q Consensus 633 a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~-~~iYvCGpa~~M~~~V~~~L~~i~~~ 688 (715)
.+.+.+...+|..-. .+...+... ..+|+||| .+|+++|...|.++..+
T Consensus 172 ~~~~~~~~~g~~~~~------~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 172 LYTERGKLQGRIDVS------RLLSAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEEecCCccccccHH------HHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 333211122222211 111122223 89999999 89999999998766543
No 64
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.86 E-value=1.4e-21 Score=205.02 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=132.3
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCC
Q 005072 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 556 (715)
Q Consensus 477 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~ 556 (715)
..+|||+.+-+|...+|+|||++.+ .+.++|+|+. .|.+|+||+++.+|+ .+.|..|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGD------KLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCC------EEEEECCCCC
Confidence 4579998765676567999999975 3678888753 288999999988876 3566667666
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 557 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 557 -F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
|.++....+|+||||+|||||||++|+++...... ..++++||||+|+.+ |++|.+||++|++.. +++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88776566899999999999999999999875321 225899999999997 999999999998753 3455566
Q ss_pred cCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 636 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 636 r~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++.. ..+++++.+.+.. .. -..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~---~~-~~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT---LK-DIDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhcc---CC-CcCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 5432 2456654433310 00 014678999999 99999999998754
No 65
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.86 E-value=3.4e-21 Score=197.99 Aligned_cols=186 Identities=19% Similarity=0.280 Sum_probs=138.8
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.+ ..|.+|.||+++.+|+ .+.+..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 45689998765553 46799999998863 46788887643 3589999999887766 466777
Q ss_pred ecCCcccCCCCC-CCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcC-CCcEE
Q 005072 553 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 630 (715)
Q Consensus 553 ~~~~F~Lp~~~~-~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~l 630 (715)
+.|.|.++.+.. .++||||+||||||+++++++...... ...+++|+|++|+.+ |.+|.+||+++.+.. ..+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 788998876554 799999999999999999999876421 126899999999997 999999999998762 45577
Q ss_pred EEEEecCCCC----ccccchhhhhchhHHHhc-ccCCcEEEEeCCchhhHH-HHHHHHHHH
Q 005072 631 IVAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHTI 685 (715)
Q Consensus 631 ~~a~Sr~~~~----k~yVq~~l~~~~~~i~~~-i~~~~~iYvCGpa~~M~~-~V~~~L~~i 685 (715)
++++++.+.. .+++++.+.... ... ...+..+|+||| ++|++ ++.+.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~ 224 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKEL 224 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 7788875432 456654432211 110 124678999999 99999 999888653
No 66
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.85 E-value=3.2e-21 Score=202.07 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=131.7
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCC
Q 005072 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 556 (715)
Q Consensus 477 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~ 556 (715)
..+|||+.+.+|...+|+|||++.+ .++++|+|+. .|.+|++|.++.+|+ .+.|..|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCC
Confidence 4679998766676678999999853 4789988863 288999999887766 4667777776
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 557 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 557 -F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
|.++.+..+|++|||+|||||||+++++++..... ..++++||||+|+.+ |++|.+||++|++.. ++...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 87776556899999999999999999998765321 125799999999998 999999999998753 2344455
Q ss_pred cCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 636 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 636 r~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++.. ..+++++.+.+.. +.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4321 2356665443310 111 13578999999 99999999988764
No 67
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.85 E-value=5.1e-21 Score=204.40 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=134.7
Q ss_pred CChHHHHHHHcCC-------CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceee
Q 005072 477 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 549 (715)
Q Consensus 477 ~p~~~~l~~~~p~-------l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~ 549 (715)
..+|||+.+-++. ...|+||++|+|. .++.++|+|+.+...........|.+|+||+++.+|+ .+.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEE
Confidence 4678987654442 2469999999985 4578999987652211001124599999999887876 467
Q ss_pred EEEecCCcccCCC---------------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCccccc
Q 005072 550 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 614 (715)
Q Consensus 550 v~v~~~~F~Lp~~---------------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 614 (715)
+..|.|.|.++.+ ...|++|||+|||||||++++++...... ...+++|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhH
Confidence 7778888865422 12589999999999999999998876421 125799999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----Cccccchhhhhch-hHHH-h-cccCCcEEEEeCCchhhHH-HHHHHHHHH
Q 005072 615 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKS-SDIW-N-MLSEGAYLYVCGDAKSMAR-DVHRTLHTI 685 (715)
Q Consensus 615 ~dEL~~~~~~~~~~~l~~a~Sr~~~-----~k~yVq~~l~~~~-~~i~-~-~i~~~~~iYvCGpa~~M~~-~V~~~L~~i 685 (715)
.+||++++ ....++++.+.+++.. ..++|+..+.+.. .... + ...++..+|+||| ++|++ .+.+.|.+.
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLEKI 290 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 99999865 4445678888887422 3466665443321 0000 0 0013468999999 99998 567777554
No 68
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.84 E-value=1.4e-20 Score=190.71 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=128.4
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhcc-CCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l-~~g~~~~~~~~v~v~v~~ 554 (715)
...+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+. ..+.+|.||.+. .+|+ .+.+..|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--------~g~~~s~~l~~~~~~Gd------~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--------ASRGGSRYMHELLRVGD------ELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--------CCCchHHHHHhcCCCCC------EEEEcCCc
Confidence 4568999876656667899999999863 478998886431 113479999764 4454 46788888
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|.|.++.+ .+|+||||+||||||+++++++..... .+++||||+|+.+ |.+|.+||+++. .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 89988653 579999999999999999999886522 5799999999997 899999999987 22 345556
Q ss_pred ecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 635 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 635 Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+++. ...++++.+.. +..+..+|+||| +.|++++.+.|.+.
T Consensus 158 ~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 158 DDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred CCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 6532 23333333221 124679999999 89999999988764
No 69
>PRK09271 flavodoxin; Provisional
Probab=99.84 E-value=2.7e-20 Score=180.78 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=112.9
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+|+|+|+|+|||||++|+.|++.+...+ ..+++.++++.+..+. ..++.+++++||++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 58999999999999999999999998876 4566777766553221 1245678999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccccccCCC---CCchhhHHHHHHHHHHH
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDD---QCIEDDFSAWRELVWPE 259 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~---~~~e~~f~~W~~~l~~~ 259 (715)
+|.+. ..++++++|||+||+.| ++||.+++.++++|.... +....+-. ....+.+.+|..++++.
T Consensus 77 ~l~~~-----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAET-----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHH-----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 99864 24688999999999999 899999999999998642 32222221 12247899999998887
Q ss_pred H
Q 005072 260 L 260 (715)
Q Consensus 260 L 260 (715)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 70
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.84 E-value=9.7e-21 Score=193.50 Aligned_cols=147 Identities=19% Similarity=0.302 Sum_probs=109.1
Q ss_pred ccccccCCCCCCC--CCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCC---CCCCC
Q 005072 492 PRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 566 (715)
Q Consensus 492 pR~YSIsSsp~~~--~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~---~~~~p 566 (715)
.|+|||+|+|..+ .+.++|+|+. .|.+|+||.+...... ..+..+.+..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 4999999999743 2678887753 2889999998754210 0112577888899999875 34578
Q ss_pred eEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccch
Q 005072 567 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 646 (715)
Q Consensus 567 iImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~ 646 (715)
+||||+|||||||+++++++..... ...+++|+||+|+.+ |++|.+||.++... ...... ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 9999999999999999998875421 136899999999998 99999999876531 111111 11
Q ss_pred hhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 647 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 647 ~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
...||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 116999999 9999999988764
No 71
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.83 E-value=2.4e-20 Score=194.24 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=127.9
Q ss_pred CCChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEc
Confidence 456899987655543 58999999998 4788988863 288899999887766 467777
Q ss_pred ecCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 553 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 553 ~~~~-F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
|.|+ |.++. ..+|+||||+||||||+++++++....+ .+++|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 8765 88764 5679999999999999999999987533 4789999999997 9999999998431 22
Q ss_pred EEEecCC--CCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 632 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 632 ~a~Sr~~--~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+. ++++ ..++||++.+.+.. .....||+||| ++|++++.+.|.+.
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 22 2332 24578887765431 23568999999 99999999988764
No 72
>PRK06756 flavodoxin; Provisional
Probab=99.82 E-value=1.6e-19 Score=173.03 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=113.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++|+|+|+|+|||||.+|+.|++++.+.+ ..++++|+.+... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 478999999999999999999999998765 4567888866432 235778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (715)
+.|... .++++++++||.|++.|.|||.+.+.+++.|.++|++.+.+.....- ...+++++.|.
T Consensus 74 ~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~-~p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL-TPEDEDVEKCL 137 (148)
T ss_pred HHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec-CCCHHHHHHHH
Confidence 988643 48899999999999999999999999999999999999877544332 22356665543
No 73
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.82 E-value=1.7e-19 Score=176.40 Aligned_cols=140 Identities=28% Similarity=0.451 Sum_probs=115.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHH
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (715)
+|.|+|+|+|||||.+|+.|++.+.. ..++++|+++.+. .++.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 47899999999999999999999863 2367888887653 3577899999999999999999999999998
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc----------------------cccCC
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDD 241 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~----------------------g~gD~ 241 (715)
|... .+++++++|||+||+. | ++||.+.+.+++.|++.|++.+... .++.+
T Consensus 71 l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 8643 4789999999999984 7 6999999999999999999977654 12223
Q ss_pred CC--CchhhHHHHHHHHHHHH
Q 005072 242 DQ--CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L 260 (715)
++ -.+++++.|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 22 25778899998876654
No 74
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=6.8e-20 Score=190.89 Aligned_cols=178 Identities=22% Similarity=0.317 Sum_probs=141.6
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecC
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 555 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~ 555 (715)
.+.+|||+.+.+|....|+|||+|.+.. .+.++|.+++. ..|.+|.+++.+.+++. +.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~------i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGDK------IRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCCE------EEEEcCCC
Confidence 4688999988888889999999999873 46666666543 35999999999987763 66778888
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005072 556 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 635 (715)
Q Consensus 556 ~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 635 (715)
++.+.++..+|+++||+|||+||+++++++....+ ...+++++||.|++. |+++.+||+++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 87777666788999999999999999999988743 236899999999998 99999999999875 4555554
Q ss_pred cCCC--Ccccc-chhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 636 REGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 636 r~~~--~k~yV-q~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
+++ .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+-.
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 332 57888 666655311 14689999999 999999998887654
No 75
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.82 E-value=1.3e-19 Score=172.14 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=103.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeE-EecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|+++|+|+|+|||||++|+.|++.+...+ ..++ ++++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 57999999999999999999999998765 3344 4555543211 123567899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (715)
++|.. ++++|+|||+||+.| ++||.++++++++|.+++..--+....++ ....+.+..|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 99853 578999999999999 79999999999999776222111221111 22456788998875
No 76
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.82 E-value=6.7e-20 Score=184.32 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=148.7
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEE
Q 005072 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (715)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImI 570 (715)
.-|.||++|-|.+ .+.|.+-|++...+......+.|.||+|+.++++|++ +.|++|.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDK------vtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDK------VTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCe------EEEeccchhhhhc-cCCCceEEE
Confidence 3589999999975 4788888876543333446789999999999999884 7899999988765 568999999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC------cccc
Q 005072 571 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYV 644 (715)
Q Consensus 571 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~------k~yV 644 (715)
+||.|.||+||-+-+.+.+.++ .+++.+.||+|+.. +.+|++|+++++++.++|+.|+++|.+.++ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 9999999999999888876654 27899999999998 999999999999999999999999986542 2444
Q ss_pred chhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCC
Q 005072 645 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 691 (715)
Q Consensus 645 q~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~ 691 (715)
...+.+. .+.++- +++..+|+||| +-|..+|.+.|.+...+..+
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 4444443 222222 56889999999 88999999999888766543
No 77
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.81 E-value=6.1e-20 Score=194.48 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=126.0
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCcee-eEEEec
Q 005072 477 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 554 (715)
Q Consensus 477 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v-~v~v~~ 554 (715)
..+|||+.+-++. ..+|+|||+|++. .++.++|+|+.+ |..|++|+++.+|+ .+ .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~-~~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDR-EKGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcC-CCCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcCC
Confidence 4579998654443 2458999999875 347899888643 88899999888876 35 577888
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|+|.... ..+++||||+|+||||+++++++....+ .+++||||+|+.+ |++|.+||+++... +++ .
T Consensus 90 G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 8765543 3578999999999999999999876532 4799999999997 99999999987642 222 2
Q ss_pred ecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 635 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 635 Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.++. .+++|++.+.+.. .+ ......||+||| ++|+++|.+.|.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~~---~~-~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKELL---ES-GKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHHh---hc-CCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 33332 4567776554321 11 112457999999 99999999988654
No 78
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.81 E-value=1e-19 Score=188.68 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=126.2
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+| ....|+|||+|.|.. .+.++|+|+. .|..|+||.++.+|+ .+.|..
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~g 85 (243)
T cd06192 24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMG 85 (243)
T ss_pred cCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEc
Confidence 3457888865543 446799999999853 4788887753 288899999887766 466777
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|+|.+..+..++++|||+|||||||++++++....+ .+++||||+|+.+ |.+|.+||+++. . ...
T Consensus 86 P~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~ 152 (243)
T cd06192 86 PLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEI 152 (243)
T ss_pred cCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEE
Confidence 87877655444679999999999999999999987532 5899999999997 999999998872 1 222
Q ss_pred EEecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 633 AFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 633 a~Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
..++++. ..+++++... ... ...+..+|+||| ++|++++++.|.+..
T Consensus 153 ~~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 153 WTTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EEecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 3344332 3355554311 111 123468999999 999999999998764
No 79
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=1.3e-19 Score=186.89 Aligned_cols=164 Identities=23% Similarity=0.314 Sum_probs=123.8
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecC
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 555 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~ 555 (715)
...+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 45689998765566567999999987 578887753 288999999977765 466777777
Q ss_pred C-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 556 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 556 ~-F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
. |.++ .+|+||||+|||||||++++++.... ++++||||+|+.+ |++|.+||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 57999999999999999999987652 5799999999997 99999999972 1 233332
Q ss_pred ecCC--CCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 635 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 635 Sr~~--~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+ ++ ...+++++.+.+.. ......||+||| ++|++++.+.|.+.
T Consensus 145 ~-~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 145 D-DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred e-CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 2 22 13467776554321 123468999999 99999999999764
No 80
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.80 E-value=4.4e-19 Score=167.68 Aligned_cols=135 Identities=23% Similarity=0.305 Sum_probs=111.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC-hhHHHHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F~~~ 185 (715)
|+|+|+|+||||+.+|+.|++.+...+ ..++++++.+++. .++..++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 579999999999999999999998765 5578888887764 3567899999999999999999 999999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCC--CCchhhHHHHHHH
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWREL 255 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~ 255 (715)
|... .++|++++|||+|++.|+ ||.+++.++++|+++|++++.+....+.. ....+...+|.++
T Consensus 73 l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 9753 378999999999999998 99999999999999999999874433321 1223344556544
No 81
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.80 E-value=1.5e-19 Score=188.04 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=125.2
Q ss_pred CCChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCcee-eEEEe
Q 005072 476 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v-~v~v~ 553 (715)
...+|||+.+.++ ....|+|||+|.|. ..+.++|+|+. .|..|.+|.++.+|+ .+ .+..|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~-~~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDP-EKGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcC-CCCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecC
Confidence 3468898765433 23569999999875 34788888753 277899998887765 35 46777
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.+.. ..+|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 78876543 3679999999999999999999976532 5799999999997 99999999998643 2222
Q ss_pred EecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 634 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 634 ~Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
+++.. ..+|+++.+.+.. .+. .....||+||| ++|++.+.+.|.+
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~---~~~-~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELI---ESG-EKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred -eCCCCCCccccchHHHHHHH---hcc-CCccEEEEECC-HHHHHHHHHHHHH
Confidence 34322 3467766554321 111 23457999999 9999999998864
No 82
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=1e-19 Score=195.63 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=122.1
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEec
Q 005072 478 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 478 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~ 554 (715)
-+|||+.+-.| +...|+|||+|+|. ..+.++|+|+.+ |..|++|.++.+|+ .+.|..|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~-----------G~~T~~L~~l~~Gd------~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIR-----------GVKTKKIAKLNKGD------EILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEec-----------ChhHHHHhcCCCCC------EEEEeCCC
Confidence 57888865433 23459999999986 357899888643 88999999888876 35666675
Q ss_pred --CCcccC---CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005072 555 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 629 (715)
Q Consensus 555 --~~F~Lp---~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~ 629 (715)
|.|.++ ....+++++||+|+||||++++++++...+ .+++||||+|+++ |++|.+||+++..+..++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~- 229 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL- 229 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE-
Confidence 337653 234568999999999999999999887643 4799999999997 999999999986542221
Q ss_pred EEEEEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 630 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 630 l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.+..++. .+++|++.+.+. +...||+||| +.|++.|.+.|.+.
T Consensus 230 ---~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ---NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ---EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112221 233444443321 2367999999 99999999988764
No 83
>PLN02252 nitrate reductase [NADPH]
Probab=99.79 E-value=3.9e-19 Score=212.22 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=137.1
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
.++|||+.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 467888754332 224699999999863 4789999987532111112246999999999888764 566666
Q ss_pred cCCc--------ccCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHH
Q 005072 554 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 623 (715)
Q Consensus 554 ~~~F--------~Lp~~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 623 (715)
.|.| .++.. ..++++|||+|||||||+++|++++.... ...+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 6654 44432 24799999999999999999999876432 226899999999997 9999999999998
Q ss_pred cC-CCcEEEEEEecCC-C----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHH-HHHHHHHH
Q 005072 624 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 685 (715)
Q Consensus 624 ~~-~~~~l~~a~Sr~~-~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~-V~~~L~~i 685 (715)
+. ..++++.++|++. . .+++|+..+.+.. ......+..+|+||| ++|++. +...|.++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 75 4567888888743 1 3466665443221 111124578999999 999985 67777553
No 84
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.7e-19 Score=182.91 Aligned_cols=164 Identities=19% Similarity=0.321 Sum_probs=127.0
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeEEEecCCcccCCCCCCCe
Q 005072 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 567 (715)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~pi 567 (715)
+..|+|||||++.. ..+++++|+.. |..|.-|++ +++|. ++.|.+|.|.|........ -
T Consensus 259 ~~~~HPFTIa~s~~--~sel~FsIK~L-----------GD~Tk~l~dnLk~G~------k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHE--GSELRFSIKAL-----------GDFTKTLKDNLKVGT------KLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCC--CceEEEEehhh-----------hhhhHHHHHhccCCc------eEEEecCcceeecccCCcc-c
Confidence 34699999999976 34899988754 889999988 55544 5788889999988654333 8
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchh
Q 005072 568 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 647 (715)
Q Consensus 568 ImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~ 647 (715)
|+||||+|||||+|+++.....+.+ .+++|||+||+.+ |-+|.+||++++++.+.+.+++. |.+.++|+...
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCccCHH
Confidence 9999999999999999998875433 7899999999998 99999999999998887777763 33456676533
Q ss_pred hhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 648 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 648 l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
..+... + ......||+||| ++|++.+++.|++.
T Consensus 391 ~ler~~---~-~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYP---D-RPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhccc---c-ccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 322210 0 022348999999 99999999988765
No 85
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.77 E-value=7.5e-18 Score=162.12 Aligned_cols=143 Identities=24% Similarity=0.335 Sum_probs=114.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|+++.|+|+|+|||||.+|+.|+++|...+ ..+. ++......+ ..+..++.++++++|||.|+.|+++..|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~--~~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADG--FEVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCC--ceEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 689999999999999999999999998765 2222 222222211 12357899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcC--Cccccccccc--CC--CCCchhhHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELV 256 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~l~~~g~g--D~--~~~~e~~f~~W~~~l 256 (715)
.-+... .+++++||+||+||+.|.. ||.++..+.+.|+..| +....+.-.. |. ....++....|.+++
T Consensus 73 ~~~~~~-----~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEPI-----DFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhccc-----CcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 999862 5899999999999999977 9999999999999999 5556655444 32 345788999999988
Q ss_pred HHH
Q 005072 257 WPE 259 (715)
Q Consensus 257 ~~~ 259 (715)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 653
No 86
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.76 E-value=1.8e-18 Score=214.34 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=136.3
Q ss_pred CChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
+.+|||+.+.+| . ...|+|||+|.|. .++.++|+|+ ...|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCCCCE------EEEeCC
Confidence 578999875433 1 2359999999996 4577888764 135889999998888774 445443
Q ss_pred c----------CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHH
Q 005072 554 Q----------SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 623 (715)
Q Consensus 554 ~----------~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 623 (715)
. +.|.++....+|+||||+|||||||++|++++..... .....+++||||+|+.+ |++|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 2 2466666666899999999999999999998876321 01236899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 624 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 624 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.. .++++.++|++++ ..++|++.+.+. .......+..+|+||| ++|++++.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 754 4688888887543 346666543322 1111124578999999 99999999988765
No 87
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.76 E-value=7.9e-18 Score=175.08 Aligned_cols=183 Identities=15% Similarity=0.218 Sum_probs=138.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
.|.||.+....|. ..-|+||-.|++.. .+.+++.|++. ..|.+|.||.++..|+. +.+.+|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEecC
Confidence 4666666544442 35799999999874 57899888753 34999999999999874 667777
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 632 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~l~~ 632 (715)
.|.|.+++...+.+.|||||||||||..++|+.+...++ ..+++|+|++++++ |.++++||+.++.+.+ .+.++.
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d---~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED---TTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC---CcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 889988876678899999999999999999999875432 47899999999998 9999999999999877 778888
Q ss_pred EEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHH-HHHHH
Q 005072 633 AFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTL 682 (715)
Q Consensus 633 a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~-V~~~L 682 (715)
+.+++.. .++||...+... .+..-......++|||| ++|... +...|
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i~~--~l~~~~~~~~~~liCGP-p~m~~~~~~~~l 273 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLIKE--HLPPPKEGETLVLICGP-PPMINGAAQGNL 273 (286)
T ss_pred EEcCCcccccCccCccCHHHHHh--hCCCCCCCCeEEEEECC-HHHHhHHHHHHH
Confidence 8887653 456776443321 01111112488999999 999974 33333
No 88
>PRK09267 flavodoxin FldA; Validated
Probab=99.75 E-value=2e-17 Score=162.06 Aligned_cols=142 Identities=27% Similarity=0.445 Sum_probs=114.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++|+|+|+|+||||+.+|+.|++.+.. ..++++|+++... .++..++.+||++|||+.|.+|+++..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999863 2357888877653 35778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc---cccC-----------------C
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLGD-----------------D 241 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~---g~gD-----------------~ 241 (715)
+.+... .|+++++++||+||+. | ++||.+.+.+++.|.+.|++.+... |... .
T Consensus 71 ~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 887543 4889999999999985 8 8999999999999999998855431 1111 1
Q ss_pred CC---CchhhHHHHHHHHHHHH
Q 005072 242 DQ---CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 242 ~~---~~e~~f~~W~~~l~~~L 260 (715)
+. -.++++++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 13688899999987764
No 89
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.72 E-value=1.8e-17 Score=149.82 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=80.8
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005072 569 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 643 (715)
Q Consensus 569 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~-~~l~~a~Sr~~~----~k~y 643 (715)
|||+|||||||++|++++.... ..++++||||+|+.+ |++|++||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999998763 237999999999998 99999999999987765 233333 43322 3689
Q ss_pred cchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHH
Q 005072 644 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 680 (715)
Q Consensus 644 Vq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~ 680 (715)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654332 222357899999999 999999864
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.71 E-value=2.5e-17 Score=196.94 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=128.9
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCcee-eEEEec
Q 005072 477 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 554 (715)
Q Consensus 477 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v-~v~v~~ 554 (715)
..+|||+.+.++.. .+|+|||+|.+. ..+.++|+|+.+ |..|++|+++.+|+ .+ .|..|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~-~~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADP-EKGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCC-CCCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCC
Confidence 46899986544432 358999999986 347899988654 88999999988876 35 577888
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|+|..+.. .++++|||+|+|||||++++++..+.+ .+++||||+|+.+ |++|.+||+++..+ ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88876533 478999999999999999999887643 4799999999997 99999999988642 2332
Q ss_pred ecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 635 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 635 Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.+++ .+++|++.+.+... ...+...||+||| ++|++.|.+.|.+.
T Consensus 156 t~dg~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVIK----RETKVDKVFAIGP-AIMMKFVCLLTKKY 203 (752)
T ss_pred ECCCCCCCcccHHHHHHHHhh----cCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 33432 46788876544311 1112357999999 99999999988653
No 91
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.69 E-value=9.2e-17 Score=162.58 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=117.1
Q ss_pred CCChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|.. +.|+|||+|.|....+.++|+|+. ..|..|.++.++...........+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCceeEEEEE
Confidence 456788877666654 689999999986424789988863 238888877776520000112256677
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcc-cccHHHHHHHHHcCCCcEE
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 630 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D-~ly~dEL~~~~~~~~~~~l 630 (715)
+|.|.|..+.....++||||+||||||++++++++...........++.|+|++|+.+ | ..|.+||....+-....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 7778876444456789999999999999999999887542111236899999999997 6 5799999751111111023
Q ss_pred EEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 631 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 631 ~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
.+.+++ +|+||| .+|+++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333332 999999 8999999887765
No 92
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.68 E-value=5.1e-17 Score=167.72 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=108.5
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEE
Q 005072 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (715)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImI 570 (715)
..|+|||+|.+. ..++++|+|+.+ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ..++++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 469999999875 357888887642 11389999999888876 467788889998864 45789999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhh
Q 005072 571 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 650 (715)
Q Consensus 571 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 650 (715)
|+||||||+++++++.... .++++||++|+.+ |.++.+++. .++++.+.++++. .+.....+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999976431 4799999999985 655443321 2355555443332 1111100000
Q ss_pred chhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 651 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 651 ~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
. .........+|+||| ++|++.+++.|.+
T Consensus 191 ---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ---A-LAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0 011134579999999 8999999888764
No 93
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.66 E-value=4.2e-16 Score=188.61 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=126.3
Q ss_pred CCChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCcee-eEEEe
Q 005072 476 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v-~v~v~ 553 (715)
.+.+|||+.+..+ .-..|+|||+|.|. ..+.++|+|+.+ |..|.+|.++.+|+. + .|..|
T Consensus 676 ~~~PGQFv~L~~~~~ge~rP~SIas~~~-~~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GP 737 (944)
T PRK12779 676 SAQAGQFVRVLPWEKGELIPLTLADWDA-EKGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGP 737 (944)
T ss_pred cCCCCceEEEEeCCCCCEEeEEccCCCC-CCCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecC
Confidence 3468999865432 22359999999875 347899888643 778999998888763 5 37778
Q ss_pred cCCcc-cCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHH---HHHHHcCC-C
Q 005072 554 QSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-L 627 (715)
Q Consensus 554 ~~~F~-Lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL---~~~~~~~~-~ 627 (715)
.|+|. ++. ...++++|||+|+||||+++++++....+ .+++|+||+|+++ |++|.+++ ++|++... .
T Consensus 738 lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~ 810 (944)
T PRK12779 738 LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQ 810 (944)
T ss_pred CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCC
Confidence 77764 443 23468999999999999999999876543 5799999999996 88887764 55655433 3
Q ss_pred cEEEEEEecCCC--CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 628 SQLIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 628 ~~l~~a~Sr~~~--~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++++++ +.++. .+++|++.+.+........- .+...||+||| ++|++.|.+.|.+.
T Consensus 811 ~~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 811 LDVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred eEEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 344443 44432 46788876544211100000 01357999999 99999999988654
No 94
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.60 E-value=2.7e-15 Score=138.36 Aligned_cols=92 Identities=23% Similarity=0.368 Sum_probs=72.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHh
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (715)
|+|+|+|||||+|++++. ..+..+.+++.+. ..+ .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~lg---------~~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLG---------FQHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHcC---------CCcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 689999999999954432 1123345554332 124 5666655 9999999999999999888863
Q ss_pred hcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHH
Q 005072 189 QKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 227 (715)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 227 (715)
+.+||||.||++| ++||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999999877
No 95
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.59 E-value=3.3e-15 Score=182.38 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=122.7
Q ss_pred CChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCcee-eEEEe
Q 005072 477 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v-~v~v~ 553 (715)
.-+|||+.+.++ ...+|+|||++.+. ..+.|.|.++.+ |..|.||+ ++.+|+. + .+..|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~------l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQAL-----------GKTTREMMTKFKAGDT------FEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEec-----------CcHHHHHHhcCCCCCE------EeeeecC
Confidence 457999865443 23469999999875 346788777543 88999984 7777663 4 46667
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.... ..+++||||+|+||||+++++++....+ .+++++||+|+.+ +++|.+||+.+.. +++++
T Consensus 90 lG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~ 156 (1006)
T PRK12775 90 LGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC 156 (1006)
T ss_pred CCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE
Confidence 77665432 2468999999999999999999876543 4689999999997 9999999987753 23333
Q ss_pred EecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+.+++ .+++|++.+.+... + .....+|+||| ++|++.|.+.+.+.
T Consensus 157 -tddgs~G~~G~vt~~l~~~l~---~--~~~d~vy~CGP-~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVCE---K--DKPDLVVAIGP-LPMMNACVETTRPF 203 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHhc---c--CCCCEEEEECC-HHHHHHHHHHHHHC
Confidence 33432 46788876654211 1 12357999999 89999999988643
No 96
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.55 E-value=3e-14 Score=158.12 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=114.2
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
..+++|+|+|+|+|||||.+|+.|++.+.+....+.++++++.+.+.+ ++..++.+++.+||++|||+.|.+|+ +..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~--~i~~~~~~~d~ii~GspT~~~~~~~~-~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN--DIITEVFKSKAILVGSSTINRGILSS-TAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH--HHHHHHHhCCEEEEECCCcCccccHH-HHH
Confidence 356889999999999999999999999973222356788999887653 34455678999999999998888854 999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPE 259 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~ 259 (715)
|+++|... .++|+++++|| +|.|+|.+.+.+.++|+++|++.+.+.....- +....+.+.+|.++|...
T Consensus 322 ~l~~l~~~-----~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 322 ILEEIKGL-----GFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHHhhcc-----CcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998764 48899999999 59999999999999999999998875433222 112344557777776543
No 97
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.54 E-value=3.6e-14 Score=135.36 Aligned_cols=140 Identities=20% Similarity=0.271 Sum_probs=90.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCC-CCCCCChhHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAARF 182 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy-G~G~~pdna~~F 182 (715)
|+++.|+|.|+||||+.|+++|...+.+......+..+++.++..++. ..+.....+|+++||| |.|.+|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~- 76 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDV- 76 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCcc-
Confidence 467999999999999999999998765421012233466655542211 1245567899999999 89987776544
Q ss_pred HHHHHhhcC---CCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHH
Q 005072 183 YKWFTEQKE---GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (715)
Q Consensus 183 ~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~ 255 (715)
+|+.+... ......++.+||||+||++| ++||.+|+++++. .+.--|+.. +-.+..+|++.-.+.
T Consensus 77 -~~vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~f----El~GT~~Dv~~v~~~ 145 (154)
T PRK02551 77 -EILTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLADF----ELRGTPSDIERIAAI 145 (154)
T ss_pred -ccchHHHHHHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEEe----eccCCHHHHHHHHHH
Confidence 33222100 00123678999999999999 8999999999976 344433322 223555665544433
No 98
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.52 E-value=7.7e-14 Score=157.92 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=114.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
.+++|+|+|+|+|||||.+|+.|++.+++.+..+.++++++++.+.++ +..++.+++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 567899999999999999999999999877544667889998877533 344556789999999999887777 69999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHHH
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L 260 (715)
++.|... .++|+++++|| +|.|+|.+.+.+.++|+.+|++.+-+ ....- +....+...++-+.|...+
T Consensus 327 l~~l~~~-----~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~~~-l~~~~~P~ee~~~~~~~~g~~la~~~ 396 (479)
T PRK05452 327 LEEITGL-----RFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMSLS-LKAKWRPDQDALELCREHGREIARQW 396 (479)
T ss_pred HHHhhcc-----CcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEecc-EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9998764 48999999999 68999999999999999999997532 22221 1123445567777776655
Q ss_pred H
Q 005072 261 D 261 (715)
Q Consensus 261 ~ 261 (715)
.
T Consensus 397 ~ 397 (479)
T PRK05452 397 A 397 (479)
T ss_pred h
Confidence 5
No 99
>PRK05569 flavodoxin; Provisional
Probab=99.49 E-value=3.2e-13 Score=128.24 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=94.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC-hhHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F 182 (715)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++.+++.++|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4578888887764 3578899999999999888764 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
++.|... .++|+++++||.+... ++.+.+.+.+.|.+.|++.+.+
T Consensus 73 ~~~l~~~-----~~~~K~v~~f~t~g~~---~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLT-----PNENKKCILFGSYGWD---NGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhcc-----CcCCCEEEEEeCCCCC---CCcHHHHHHHHHHHCCCeEeee
Confidence 9998753 3689999999964322 2456788899999999987655
No 100
>PRK05568 flavodoxin; Provisional
Probab=99.48 E-value=3.2e-13 Score=128.30 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=93.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC-hhHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F 182 (715)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++..++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 468999999999999999999999998765 4678889987764 3578899999999999888864 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHH-HHHHHHHHHHHHHcCCccccc
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~l~~ 235 (715)
++.+.. .++++++++||. |.|- ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~~------~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESISS------LVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhhh------hhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 988754 368999999996 2221 345788889999999987765
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.45 E-value=5.2e-13 Score=125.23 Aligned_cols=121 Identities=22% Similarity=0.368 Sum_probs=87.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCC----CCCChhHHH
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAAR 181 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~----G~~pdna~~ 181 (715)
.+.|+|.|.||||+.||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 578999999999999988886531 234554321 23456678999999999 699999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCC---chhhHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC---IEDDFSAWRELVW 257 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~---~e~~f~~W~~~l~ 257 (715)
|++.+.+ ..+.++|||.||++| ++||.+++.+.+++. +|+..-=+-.+ ..+.+..|.+++|
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~~ 129 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEFW 129 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9877543 246899999999999 899999999999876 23221111122 3445677887776
Q ss_pred H
Q 005072 258 P 258 (715)
Q Consensus 258 ~ 258 (715)
.
T Consensus 130 ~ 130 (134)
T PRK03600 130 Q 130 (134)
T ss_pred h
Confidence 5
No 102
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.43 E-value=5.8e-13 Score=155.43 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=119.9
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCC----CC-CCCCCce
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSW 547 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~----g~-~~~~~~~ 547 (715)
+..+|||+.+-+|. .+.|+|||+|+|..+++.+.++|+.. |-.|+.|.+... .+ .......
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 45678887655554 36799999998865567788877642 334555544321 11 1111124
Q ss_pred eeEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHHH----
Q 005072 548 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFV---- 622 (715)
Q Consensus 548 v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~---- 622 (715)
+.|..|.|.|.++....++++|||||||||||++++++....+... ....++.|+|++|+.+ |..|.+|+....
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 5666778888765444578999999999999999999998643211 1225799999999998 999999986322
Q ss_pred HcCCCcEEEEEEecCCCCccccchhhhhc--hhHHHhcccCCcEEEEeCCc
Q 005072 623 QSGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDA 671 (715)
Q Consensus 623 ~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~--~~~i~~~i~~~~~iYvCGpa 671 (715)
.+....+++...+|+......+++.+..- .+.++ +-.+...+.+||+.
T Consensus 486 ~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~ 535 (722)
T PLN02844 486 SNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLE 535 (722)
T ss_pred HHhcCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCC
Confidence 12224478888899875544555555441 11222 22456789999994
No 103
>PLN02292 ferric-chelate reductase
Probab=99.42 E-value=7.8e-13 Score=153.95 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=115.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
..+||++-+.+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++.....++.+.+|
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGP 420 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGP 420 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECC
Confidence 3467655444454 4789999999985456788888763 3777888887644332111113456677
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHHH------HcCC
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFV------QSGA 626 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~------~~~~ 626 (715)
.|.+..+.....+++|||||+||||+++++++..+..... ....++.|+|++|+.+ |.++.|++.... .+..
T Consensus 421 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~ 499 (702)
T PLN02292 421 YGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFI 499 (702)
T ss_pred ccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcC
Confidence 7877544344578999999999999999999987653211 1125899999999997 998887654321 1223
Q ss_pred CcEEEEEEecCCCCc-cccchhhhhchhHHHhcc-----cCCcEEEEeCCc
Q 005072 627 LSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 671 (715)
Q Consensus 627 ~~~l~~a~Sr~~~~k-~yVq~~l~~~~~~i~~~i-----~~~~~iYvCGpa 671 (715)
..++.+.++|+.+++ .|-++ ..+.+...+ .+...+.+|||.
T Consensus 500 ~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 500 DIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred CceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 447888888876432 22222 222222221 256789999993
No 104
>PLN02631 ferric-chelate reductase
Probab=99.38 E-value=8.9e-13 Score=153.19 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCC-CCCCCCCceeeE
Q 005072 475 AKPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPI 550 (715)
Q Consensus 475 ~~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~-g~~~~~~~~v~v 550 (715)
.+..+||++-+.+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+... +++ ...+.+
T Consensus 333 ~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~V 398 (699)
T PLN02631 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVST 398 (699)
T ss_pred CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEE
Confidence 345678876555564 4679999999986456788888763 3788999977543 221 113556
Q ss_pred EEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHH------HH
Q 005072 551 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQ 623 (715)
Q Consensus 551 ~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~------~~ 623 (715)
.+|.|.|..+.....++||||||+||||+++++++..++...+ .+.+++.|+||.|+.+ |.+|.|||..+ .+
T Consensus 399 eGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~ 477 (699)
T PLN02631 399 EGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS 477 (699)
T ss_pred ECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh
Confidence 6778877665555678999999999999999999998654221 1235899999999997 99999999863 22
Q ss_pred cCCCcEEEEEEecCCC
Q 005072 624 SGALSQLIVAFSREGP 639 (715)
Q Consensus 624 ~~~~~~l~~a~Sr~~~ 639 (715)
....++...+||++.
T Consensus 478 -~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 -RLNLRIEAYITREDK 492 (699)
T ss_pred -cCceEEEEEEcCCCC
Confidence 235578888999754
No 105
>PRK06242 flavodoxin; Provisional
Probab=99.26 E-value=3.2e-11 Score=115.60 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=86.5
Q ss_pred ceEEEEEeCC-CchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|+++|+|+|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 8999999999999883 25666665442 3467899999999999 788999999998
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~ 236 (715)
+.+.. +.++++++||.+...... ..+.+.+.|..+|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEE
Confidence 87752 578999999977655433 27899999999999977653
No 106
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.06 E-value=5.7e-10 Score=110.24 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++..++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 578999999999999999999999976 4 4567888877553 2477899999999999 8999999999987
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (715)
.+.. .|+++++++|++|
T Consensus 71 ~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HHHH------HhCCCeEEEEEec
Confidence 6653 4899999999988
No 107
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.02 E-value=3.1e-09 Score=107.14 Aligned_cols=126 Identities=18% Similarity=0.121 Sum_probs=93.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCcccchh--------------HHHHhhcCCCeEEEEec
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEED--------------EYEEKLKKENIVFFFLA 168 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~--------------~~~~~l~~~~~~if~~s 168 (715)
|++|+|+|+|++|||+.+|+.+++.+.+ .+ ..++++++.+..+++. .-.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 54 5678888854322110 00467788999999999
Q ss_pred CCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
|| .|.+|..+..|++++..... ...+.++.+++|+.+......--...+.+...|..+|..-+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 99999999999999865321 23588999999997544332233445566666778888644
No 108
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.02 E-value=3.2e-09 Score=106.75 Aligned_cols=125 Identities=19% Similarity=0.106 Sum_probs=94.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhH------------H--HHhhcCCCeEEEEecCCC
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATYG 171 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~~if~~sTyG 171 (715)
+|+|+|+|+||+|+.+|+.+++.+++.. ...++++++.+...++.. + .+++..++.+||++|||
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty- 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVD-GAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR- 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence 6999999999999999999999997641 256788888654321100 0 24577899999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
.|.++..+..|++++.... ....+.++..++|+.+.............+...|...|..-+
T Consensus 80 ~g~~~~~lk~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLW-ASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred ccCccHHHHHHHHhccccc-cccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 8999999999999987542 122588999999997655544455566677777788888644
No 109
>PRK07116 flavodoxin; Provisional
Probab=99.01 E-value=2.4e-09 Score=104.05 Aligned_cols=133 Identities=14% Similarity=0.196 Sum_probs=86.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccch--------------------h---HHHHhhcCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (715)
|++++|+|.|.||||+.+|+.|++.+.... .++.+...|...+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 688999999999999999999999986421 2444433332110 0 012356789
Q ss_pred CeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005072 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (715)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~g 239 (715)
+.++|++|+| .|.+|..+..|++.+ .++++++++|+. |.+.+ +.+...+.+.+.+.+ +.+--..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeee
Confidence 9999999999 588888888887643 378999999998 66554 344455555543222 2221111
Q ss_pred CCCCCchhhHHHHHHHH
Q 005072 240 DDDQCIEDDFSAWRELV 256 (715)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (715)
+ ....++++++|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 1 112366899998764
No 110
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.92 E-value=4.2e-10 Score=113.44 Aligned_cols=179 Identities=18% Similarity=0.320 Sum_probs=103.4
Q ss_pred CCChHHHHHHH--cCCCc---ccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeE
Q 005072 476 KPPLGVFFAAI--VPRLQ---PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 550 (715)
Q Consensus 476 ~~p~~~~l~~~--~p~l~---pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v 550 (715)
...+||++.+. .|++. -|-||.|.......+.+.|.|+. ...|+.|+|+++-...|+ .+.+
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KVGD-----~v~~ 245 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKVGD-----IVGV 245 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccccc-----eeec
Confidence 34577876532 23331 25555555444346778877763 356999999997665554 4667
Q ss_pred EEecCCcccCC---CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHH-HHHcCC
Q 005072 551 FVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNN-FVQSGA 626 (715)
Q Consensus 551 ~v~~~~F~Lp~---~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~-~~~~~~ 626 (715)
+.|.|+|.... +..+|+++.++|+||+|+++|+++.+. -|..|- -+-..+.+.. +.+..
T Consensus 246 S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~RP---~~~~~~~~~~K~k~~~- 308 (385)
T KOG3378|consen 246 SPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSRP---FKQWLEQLKLKYKENL- 308 (385)
T ss_pred cCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCCc---HHHHHHHHHHHHHHHH-
Confidence 77889997743 456999999999999999999998754 222221 1111111111 00000
Q ss_pred CcEEEEEEecCCC--Cccccchhhhh--chhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHH
Q 005072 627 LSQLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 688 (715)
Q Consensus 627 ~~~l~~a~Sr~~~--~k~yVq~~l~~--~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~ 688 (715)
++.--||.+.. .+.-|...+.. +.+.+-.+-...++||.||| ...|+.|...|.++..+
T Consensus 309 --K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 309 --KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred --HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 00001122111 12222222211 12233333346799999999 89999999999887644
No 111
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.91 E-value=3.1e-09 Score=97.61 Aligned_cols=95 Identities=28% Similarity=0.459 Sum_probs=63.6
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCC----CChhHHHHHH
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~----~pdna~~F~~ 184 (715)
|+|.|.||||++|+++|...+... + +.+...+ ..+.-....|+++||||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~-------~~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREIS-------PDLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTT-------STS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-ccccccc-------ccccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999998887644321 1 1222111 11233456899999999999 9999888888
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHH
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEIL 225 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L 225 (715)
+-.+. ..-.+|.|.||++| +.||.+|+.+.+..
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 66653 46689999999999 89999999998764
No 112
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.87 E-value=1.1e-08 Score=110.56 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=100.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
++|.|+|.|++|+|+.+|+.|++.|.+.+ +.|.++++.+-+. .++.+.+.+.+.+++++||+ .+++++.+..++.
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~ 321 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALG 321 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHH
Confidence 38999999999999999999999999887 5678888887654 56778889999999999999 5556666899998
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
.+... ..+++..+||| +|.|-..+.+.+.+.|+++|-+-..+
T Consensus 322 ~v~~~-----~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 322 YVLAL-----APKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHHhc-----cCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 88865 36788899999 88999999999999999999887655
No 113
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.77 E-value=3.1e-08 Score=94.44 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=70.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHH
Q 005072 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (715)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (715)
+|+|.|.||||+.+|+.|++.|.+.+ ..+|+.+...+ ..++..++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 48999999999999999999998653 45566554211 13678999999999999 7999999999999876
Q ss_pred hhcCCCCCcCCceEEEEeccCC
Q 005072 188 EQKEGGEWLQKLKYGVFGLGNR 209 (715)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds 209 (715)
+ .|+++++++|..|-.
T Consensus 71 ~------~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 D------NLKNKKVALFSVGGS 86 (143)
T ss_pred H------HHcCCcEEEEEEeCC
Confidence 5 378999999998754
No 114
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.68 E-value=7.6e-08 Score=92.62 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.2
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCCEEEEEeeccCCcccccHHHHHHHHHcC--CCcEEEEEEecCC
Q 005072 566 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREG 638 (715)
Q Consensus 566 piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~--~~~~l~~a~Sr~~ 638 (715)
.++|||||+||+|+.+++++...... ......++.|+|.+|+.+.=..|.++|+++.... ...++.+.++++.
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRES 78 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT--
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCc
Confidence 48999999999999999999987654 2234578999999999973337786666544321 2456777777653
No 115
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.63 E-value=1.9e-07 Score=85.75 Aligned_cols=124 Identities=18% Similarity=0.304 Sum_probs=83.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCC----CCChhHHH
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAAR 181 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G----~~pdna~~ 181 (715)
.+.|+|.|.||||..|.++|. + +...+.+...++ .+.-....|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~----~~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--L----PAVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--C----CceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999998887 1 111122221211 123345589999999999 88988666
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchh---hHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED---DFSAWRELVW 257 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~---~f~~W~~~l~ 257 (715)
|+..=. -..+..+|.|.||++| ..||.+|+.+.+.+ |---++.. +-.+..+ .+..|..++|
T Consensus 66 FLn~~~--------Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F----EL~GT~~Dv~~v~~~v~~~~ 130 (141)
T COG1780 66 FLNNEH--------NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF----ELLGTAEDVAAVRKGVTEFW 130 (141)
T ss_pred Hhcccc--------chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE----eccCCHHHHHHHHHHHHHHH
Confidence 643322 3457789999999999 89999999988764 43333322 1223444 4667777777
Q ss_pred HHH
Q 005072 258 PEL 260 (715)
Q Consensus 258 ~~L 260 (715)
...
T Consensus 131 ~~~ 133 (141)
T COG1780 131 KRA 133 (141)
T ss_pred HhC
Confidence 643
No 116
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.55 E-value=6.5e-07 Score=85.85 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=96.7
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCcc---------------cchhHHHHhhcCCCeEEEEe
Q 005072 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (715)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~~if~~ 167 (715)
|+|+|++||.. |+|+.+|+.+++.+.+.+ ..++++|+.++. .+-.++.+++...+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 678899998862 11123456788999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999973 12236899999999888665433 33667778888888887553
No 117
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.49 E-value=5.4e-07 Score=87.33 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=72.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHH
Q 005072 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (715)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (715)
+|+|.|.||||+.+|+.|++.|.. ..++++++... .+.++++++++..+| -|.+++.+.+|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25667766542 267899999999999 799999988886654
Q ss_pred hhcCCCCCcCCceEEEEeccCC--chhHHHHHHHHHHHHHHH
Q 005072 188 EQKEGGEWLQKLKYGVFGLGNR--QYEHFNKIAKVVDEILAN 227 (715)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds--~Y~~f~~~~k~ld~~L~~ 227 (715)
+|+++++||--=. .=+|+..+.+++.+.+.+
T Consensus 66 ---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 ---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 5688999985211 114566666666666654
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.46 E-value=3.3e-07 Score=86.29 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=75.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+++|+|+|++|+|.++|+.||..|.+.| ..+++.|+..... -++.+++.+|++.|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 57999999999999999999999999886 4567777765431 2578899999999999 9999999999998
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (715)
.-.+. |++++.|+|.++
T Consensus 72 k~~e~------L~~kP~A~f~vn 88 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVN 88 (175)
T ss_pred HHHHH------HhcCCceEEEee
Confidence 88763 889999999875
No 119
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=3e-06 Score=99.54 Aligned_cols=196 Identities=15% Similarity=0.274 Sum_probs=112.5
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCC--CC-CCC----C
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SND----C 545 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g--~~-~~~----~ 545 (715)
+-.+||++-+-+|. ++.+||||+|+| +++.+.+.|+.. |-.|+-|.+.... .+ ... .
T Consensus 381 ~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~ 447 (646)
T KOG0039|consen 381 KYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPF 447 (646)
T ss_pred CCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccC
Confidence 33467776544564 578999999999 468899888754 5556555543321 00 000 1
Q ss_pred ceeeEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC------------CCCCEEEEEeeccCCccc-
Q 005072 546 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY- 612 (715)
Q Consensus 546 ~~v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~------------~~~~~~Lf~G~R~~~~D~- 612 (715)
.++.|.+|.|.=.-+-..-..++|||+|.|++||.|++++.......+. ..+++..++-||... ++
T Consensus 448 ~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~ 526 (646)
T KOG0039|consen 448 PKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFE 526 (646)
T ss_pred ceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chH
Confidence 2455555644322111223457999999999999999999987654332 346778888898876 54
Q ss_pred ccHHHHHHHHH---cCCCcEEEEEEec---C-CCCc----------------cccchh------hhhchhHHHhcc---c
Q 005072 613 IYEDELNNFVQ---SGALSQLIVAFSR---E-GPTK----------------EYVQHK------MMEKSSDIWNML---S 660 (715)
Q Consensus 613 ly~dEL~~~~~---~~~~~~l~~a~Sr---~-~~~k----------------~yVq~~------l~~~~~~i~~~i---~ 660 (715)
.+.+.+.+... .+.. +++...+. . ..++ ..++.. -+-+-++++.-+ .
T Consensus 527 wf~~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~ 605 (646)
T KOG0039|consen 527 WFKGLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSH 605 (646)
T ss_pred HHHHHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhC
Confidence 55666555442 2222 33333321 0 0000 111100 011122233222 1
Q ss_pred CC--cEEEEeCCchhhHHHHHHHHHHHHH
Q 005072 661 EG--AYLYVCGDAKSMARDVHRTLHTIVQ 687 (715)
Q Consensus 661 ~~--~~iYvCGpa~~M~~~V~~~L~~i~~ 687 (715)
++ .-|++||| +.|.+.+++...+...
T Consensus 606 ~~~~vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 606 PNVRVGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred CCceEEEEEeCC-HHHHHHHHHHHHhccc
Confidence 22 57999999 9999999888776543
No 120
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.24 E-value=2.7e-06 Score=82.35 Aligned_cols=132 Identities=17% Similarity=0.325 Sum_probs=74.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCccc---c------hh-----------HH---HHhhcCCCe
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------ED-----------EY---EEKLKKENI 162 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~------~~-----------~~---~~~l~~~~~ 162 (715)
+++|+|=|+||||+.+|+.|++.+... -+++...+.|.. + .. ++ ..++.+|+.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 578999999999999999999876432 234444444443 0 00 00 125688999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (715)
++++.|+| -|.+|.-+..|++.. .++|++++.|-. |.+.. ....+.+.+.+. +|+-.-.+....+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs~~---~~~~~~l~~~~~--~a~i~~g~~~~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGSGF---GNSLEDLKKLCP--GATILEGLAINRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS--C---HHHHHHHHHH-T--TSEE---EE---S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCCCh---hHHHHHHHHHCC--CCEeecCeEEeCC
Confidence 99999999 899998877776432 388999999964 33333 334444444332 3332222222111
Q ss_pred CCCchhhHHHHHHHH
Q 005072 242 DQCIEDDFSAWRELV 256 (715)
Q Consensus 242 ~~~~e~~f~~W~~~l 256 (715)
+. .++++.+|.++|
T Consensus 143 ~~-~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SV-SEEEIKEWLKKI 156 (156)
T ss_dssp ----HHHHHHHHHHT
T ss_pred Cc-CHHHHHHHHHhC
Confidence 11 578999998764
No 121
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.05 E-value=0.00016 Score=72.43 Aligned_cols=120 Identities=11% Similarity=0.162 Sum_probs=94.6
Q ss_pred ceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCcccch-----------hHHHHhhcCCCeEEEEecCCC
Q 005072 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (715)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~~if~~sTyG 171 (715)
++|+++.||- .+++..+++.+.+.+.+.+ ..++++|+.++...+ ..+.+++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 5799999997 4889999999999998765 567778887655422 12345677889999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
.|..|.-.+.|++|+.. ..+.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999953 25899999999998 4455555554667788889999854
No 122
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.02 E-value=1.2e-05 Score=96.48 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=63.3
Q ss_pred CChHHHHHHHcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeE
Q 005072 477 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 550 (715)
Q Consensus 477 ~p~~~~l~~~~p-----~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v 550 (715)
.-+|||+.+-.+ .+ .||++||++... ..+.|+|+++++ |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 458999865432 12 567999999865 357899998877 899999999998873 567
Q ss_pred EEec-CCcccCCCCCCCeEEEecCCcchhH
Q 005072 551 FVRQ-SNFKLPADAKVPIIMIGPGTGLAPF 579 (715)
Q Consensus 551 ~v~~-~~F~Lp~~~~~piImIa~GTGIAPf 579 (715)
.+|. ..|.++. ...+++||||+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 7774 4587764 3569999999999983
No 123
>PRK06934 flavodoxin; Provisional
Probab=97.98 E-value=0.0001 Score=75.04 Aligned_cols=134 Identities=11% Similarity=0.199 Sum_probs=80.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccc----------------hhHH---HHhhcCCCeEEE
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDEY---EEKLKKENIVFF 165 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~~~~---~~~l~~~~~~if 165 (715)
..++|.=|+.||||+.+|+.|++.+.... +++...+.|..+ .+++ ..++..|+.++|
T Consensus 60 ~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl----~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~I 135 (221)
T PRK06934 60 ASILQKNGEVLGSTQYVAQIIQEETGGDL----FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFI 135 (221)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHCCCE----EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEE
Confidence 44556666777999999999999875422 334344434321 1111 356789999999
Q ss_pred EecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccc-ccc-cCCC
Q 005072 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-VGL-GDDD 242 (715)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~-~g~-gD~~ 242 (715)
+.|.| -|.+|.-+..|++.. .++|++++.|-. |-+.. ....+.+.+... +|+.+.+ +.. +++-
T Consensus 136 G~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg~---g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~ 201 (221)
T PRK06934 136 GYPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSRF---SDSLREIKRLQP--NAQLVTQGLAISRNDV 201 (221)
T ss_pred Ecchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCCc---cchHHHHHHHcC--CcceeccceeeecCcc
Confidence 99999 888888888875443 478999999874 22222 223333333321 3322322 111 2221
Q ss_pred --CCchhhHHHHHHHH
Q 005072 243 --QCIEDDFSAWRELV 256 (715)
Q Consensus 243 --~~~e~~f~~W~~~l 256 (715)
...++++..|.+++
T Consensus 202 ~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 202 TDDDTPKEIINWLNTL 217 (221)
T ss_pred cccchHHHHHHHHHHc
Confidence 12478899998764
No 124
>PRK00170 azoreductase; Reviewed
Probab=97.84 E-value=0.00053 Score=68.86 Aligned_cols=156 Identities=9% Similarity=-0.016 Sum_probs=102.1
Q ss_pred CceEEEEEeCC--C-chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc---------------------------hhHH
Q 005072 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (715)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (715)
|++|+|++||- . |++..+|+.+.+.+++.++...++++||.+.+.. ..++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999998754466788888654321 0122
Q ss_pred HHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCch--hHHHHHHHHHHH
Q 005072 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 223 (715)
Q Consensus 154 ~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 223 (715)
.+++...+.+||++|.| .+..|.-.+.|++++.... .....++++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 45577889999999999 8889999999999985310 012357899998888532222 122444566777
Q ss_pred HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005072 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (715)
.|.-+|.+.+-.+.....+. ..+.-.+|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHH
Confidence 78888987544433222221 22334455554444333
No 125
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=97.78 E-value=0.00057 Score=67.17 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=91.0
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCcccch-----------hHHHHhhcCCCeEEEEecCCCC
Q 005072 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYGD 172 (715)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~~if~~sTyG~ 172 (715)
+|+++.||- .|++..+++.+.+.+...+ ..++++|+.++...+ ..+.+++...+.+||++|.| .
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 478899995 6889999999999998755 346677776543311 12345667889999999999 9
Q ss_pred CCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
|.+|.-.+.|++|+... .+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 99999999999998532 4889999998887 455665554456888899999965433
No 126
>PRK01355 azoreductase; Reviewed
Probab=97.77 E-value=0.00084 Score=67.67 Aligned_cols=159 Identities=12% Similarity=0.108 Sum_probs=108.0
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc-----------------hhHHHHhhcCCCe
Q 005072 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------EDEYEEKLKKENI 162 (715)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------~~~~~~~l~~~~~ 162 (715)
|++|+|+.||-. |++..+|+.+.+++++.+....++++||.+.... ...+.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987655566788888665431 1123456788899
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhc--------CC---CCCcCCceEEEEeccCC-c-hhHHHHHHHHHHHHHHHcC
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQK--------EG---GEWLQKLKYGVFGLGNR-Q-YEHFNKIAKVVDEILANQG 229 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~---~~~l~~~~~aVFGlGds-~-Y~~f~~~~k~ld~~L~~lG 229 (715)
+||++|.| .+.+|.-.+.|++++.... .. ...+.+++..|+..... . +..+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999985321 01 12477888777554332 2 2123555667778888889
Q ss_pred CcccccccccCCCC-Cch-hhHHHHHHHHHHHHHhh
Q 005072 230 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 263 (715)
Q Consensus 230 a~~l~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 263 (715)
.+.+..+..+..+. ..+ +....|.+.-..++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665554433322 111 22677777655555543
No 127
>PRK09739 hypothetical protein; Provisional
Probab=97.65 E-value=0.0014 Score=65.94 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=102.3
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCccc---------------------chhHHHHhhcCC
Q 005072 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (715)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (715)
|++|+|++||- .|++..+++.+.+++++.+ ..++++|+.+... +-..+.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999987 5778999999999998875 4567777754321 112345678889
Q ss_pred CeEEEEecCCCCCCCChhHHHHHHHHHhhcC---CCCCcCCceEEEEeccCCchhHHH-----H-HHHHHH-HHHHHcCC
Q 005072 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHFN-----K-IAKVVD-EILANQGA 230 (715)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~-----~-~~k~ld-~~L~~lGa 230 (715)
+.+||++|.| .+.+|.-.+.|++++-.... ....|.+++..++......|++|. . ....+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 88899999999988753110 123478888888765333444432 1 222333 33444576
Q ss_pred cccccccccCCC-----CCchhhHHHHHHHHHHHHHhh
Q 005072 231 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 231 ~~l~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 263 (715)
+.+-....+... ....+.+..|.++......++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 643222222221 335677899988877665543
No 128
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=97.63 E-value=0.0013 Score=64.75 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=88.2
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCcc------------c-chhHHHHhhcCCCeEEEEecCC
Q 005072 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA------------D-EEDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~------------~-~~~~~~~~l~~~~~~if~~sTy 170 (715)
+|+++.||. .|++..+|+.+.+.+.+..+ ..++++|+.+++ . +..++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 588999997 58999999999998765432 456777776542 0 1123456778899999999999
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
.|.+|.-.+.|++|+.. ..+.++++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 99999999999999853 248999999999875432 222233456677778887654
No 129
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.55 E-value=0.0021 Score=64.55 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=108.6
Q ss_pred ceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCc--------------cc-----chhH-H-HHhhcCC
Q 005072 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDE-Y-EEKLKKE 160 (715)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~-~-~~~l~~~ 160 (715)
|+|+|++||-.+ ++..+++.+.+.+++.++ ..++++||... .. .|.. . .+.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56888999773 00 1111 1 2667889
Q ss_pred CeEEEEecCCCCCCCChhHHHHHHHHHhhcC----------CCCCcCCceEEEEe-ccCCch--h-------HHHHHHHH
Q 005072 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 220 (715)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~----------~~~~l~~~~~aVFG-lGds~Y--~-------~f~~~~k~ 220 (715)
+.+||+.|.| .+.+|.-.+.|++.+-.... ....|+|+++.++- .|...+ . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 88899999999998732111 12468899877765 454422 2 45566667
Q ss_pred HHHHHHHcCCcccccccccCCC-CCchhhHHHHHHHHHHHH
Q 005072 221 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 221 ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (715)
+...+.-+|.+.+-....++.+ ...++.+++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 8888888999988776655543 223778889988875543
No 130
>PRK13556 azoreductase; Provisional
Probab=97.48 E-value=0.0047 Score=62.65 Aligned_cols=157 Identities=10% Similarity=0.081 Sum_probs=104.3
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCccc-----------------------------ch
Q 005072 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------------------------EE 150 (715)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------------------------~~ 150 (715)
|++|+|+.||-. +++..+++.+.+.+++.++...++++||.+.+. +.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998875556778888753211 00
Q ss_pred hHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC------C--CCCcCCceEEEEeccCCch-----hHHHHH
Q 005072 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE------G--GEWLQKLKYGVFGLGNRQY-----EHFNKI 217 (715)
Q Consensus 151 ~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~------~--~~~l~~~~~aVFGlGds~Y-----~~f~~~ 217 (715)
.++.+.+...+.+||++|-| .+.+|.-.+.+++|+..... . ...+.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12335567889999999999 89999999999999975310 1 1358899999987632335 344455
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005072 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (715)
...+...|.-+|.+.+-. ...+......+..+++.++-...+.+
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~~ 203 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAAK 203 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHHH
Confidence 567888888889875432 22221111234455555554444443
No 131
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.41 E-value=5.6e-05 Score=66.97 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=51.8
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.++. ...|+|||+|.|. .++.++|+|+.. ..|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45789998766662 2469999999996 457899988743 5699999999988876 478888
Q ss_pred ecCCcc
Q 005072 553 RQSNFK 558 (715)
Q Consensus 553 ~~~~F~ 558 (715)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 889885
No 132
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=96.90 E-value=0.0092 Score=60.49 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=83.1
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCccc-------------------c-hhHHHHhhcCCCeEEE
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------E-EDEYEEKLKKENIVFF 165 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~-~~~~~~~l~~~~~~if 165 (715)
.|.+.|-| +|||+.+++.+++.+++.+ ..++++.+.++.. | .+++.+.+...+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45555666 8999999999999999885 5566666665410 1 1334556788999999
Q ss_pred EecCCCCCCCChhHHHHHHH-HHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCc
Q 005072 166 FLATYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAK 231 (715)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 231 (715)
++||| .|..+..++.|++. +.-.. ....|.++..++|..+.+.-..-......+...+...|..
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~ 146 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMI 146 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCe
Confidence 99999 99999999999998 43222 1245888888888876544322223444555555555544
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=96.49 E-value=0.056 Score=55.25 Aligned_cols=128 Identities=8% Similarity=0.010 Sum_probs=88.5
Q ss_pred ccCCceEEEEEeCCCc--hHHHHHHHHHHHHHhhcCCceeEEecCCCccc---chh------HHHHhhcCCCeEEEEecC
Q 005072 101 DDGKQKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---EED------EYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 101 ~~~~~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~~------~~~~~l~~~~~~if~~sT 169 (715)
...+++|+++.||.-- ++..+|+.+++.+...+ ..++++|+.+++. +.+ .+.+.+...+.+||++|-
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE 100 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE 100 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc
Confidence 4456899999998743 45678888888887543 5677787755432 111 123445678999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
| +|..|.--+.+++|+.........+.++.++|+|.+-... --.+...+...|..+|+..+
T Consensus 101 Y-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 101 R-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred c-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccc
Confidence 9 9999999999999997531111248899999998531111 12355677888888888743
No 134
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.10 E-value=0.36 Score=48.09 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=96.6
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcc----cchhHHHHhhcCCCeEEEEecCCCCCCCCh
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~~if~~sTyG~G~~pd 177 (715)
..+++++|++++-.+..-. ++++..++.+.. ..+.+.||.... .+-......|...+.+||..|.| -..+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~-~n~~l~~~~~~~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSV-ANRVLLKPAQQL--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCH-HHHHHHHHHHcC--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 3468999999998765322 333333332322 346778875432 22222235678899999999999 677777
Q ss_pred hHHHHHHHHHhhc----CCCCCcCCceEEEEe-ccCCc--hhH--HHH-----HHHHHHHHHHHcCCcccccccccCCCC
Q 005072 178 NAARFYKWFTEQK----EGGEWLQKLKYGVFG-LGNRQ--YEH--FNK-----IAKVVDEILANQGAKRLVPVGLGDDDQ 243 (715)
Q Consensus 178 na~~F~~~L~~~~----~~~~~l~~~~~aVFG-lGds~--Y~~--f~~-----~~k~ld~~L~~lGa~~l~~~g~gD~~~ 243 (715)
-.+.+++..-... ..+..|+|+++.+.- .|... |.. |+. .-.-+...+.-+|.+-+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 7888877554321 123358999988764 44433 421 221 222223344456888776766666555
Q ss_pred CchhhHHHHHHHHHHHHHhhh
Q 005072 244 CIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 244 ~~e~~f~~W~~~l~~~L~~~~ 264 (715)
..+++.++|.++....|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 159 QSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhhh
Confidence 667888888888777666543
No 135
>PRK13555 azoreductase; Provisional
Probab=96.00 E-value=0.37 Score=48.97 Aligned_cols=128 Identities=10% Similarity=0.140 Sum_probs=89.2
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCccc--------------------chh--------
Q 005072 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (715)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------~~~-------- 151 (715)
|++++++++|-. -.+..+|+.+.+.+++.++...+.++||-+-.+ .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 568888888888888877656677777754211 001
Q ss_pred -HHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchh-----HHHHH
Q 005072 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKI 217 (715)
Q Consensus 152 -~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~-----~f~~~ 217 (715)
.+.+.+...+.+||++|-| ++.+|.-.+.|++|+.... . ....|+|++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 2335567789999999999 8889999999999887521 1 123589999999977323352 22333
Q ss_pred HHHHHHHHHHcCCcc
Q 005072 218 AKVVDEILANQGAKR 232 (715)
Q Consensus 218 ~k~ld~~L~~lGa~~ 232 (715)
...+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356777777788864
No 136
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.38 Score=50.32 Aligned_cols=165 Identities=21% Similarity=0.333 Sum_probs=99.6
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeE
Q 005072 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 568 (715)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piI 568 (715)
+..+|.|||.+-.. ..+++.|-+.++ ...|.+|.|-.+.++|+. +.|..+.+.+..++. ..-++
T Consensus 84 r~~~R~YTiR~~d~-~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDA-AAGELDVDFVLH--------GEGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeecc-cccEEEEEEEEc--------CCCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEE
Confidence 44689999986532 234555443221 256999999999999874 667777787766544 45699
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhh
Q 005072 569 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 648 (715)
Q Consensus 569 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l 648 (715)
|||==|++--+.++|++.-.. .+...|.-.++.. |. +++. ....+ ++.... |++.. + ...+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl~-r~~~~--~-~~ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWLA-RDDAP--T-EQLL 208 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC---CCCce-eEEEec-CCCcc--c-hHHH
Confidence 999999998888888876432 2446677777765 43 2221 11222 444433 33311 1 1122
Q ss_pred hhchhHHHhc-cc-CCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005072 649 MEKSSDIWNM-LS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 696 (715)
Q Consensus 649 ~~~~~~i~~~-i~-~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 696 (715)
.+. +.+. +. .+.++|+.|- ..|++.+++.|+ ++.|++...
T Consensus 209 ~~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~ 250 (265)
T COG2375 209 AAA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSR 250 (265)
T ss_pred HHH---HhcccCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHH
Confidence 222 1222 22 3479999998 677776666554 556676654
No 137
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=93.18 E-value=1.1 Score=44.55 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=82.5
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecC--CCcccc---------hhHHHHhhcCCCeEEEEecCCC
Q 005072 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDI--DDYADE---------EDEYEEKLKKENIVFFFLATYG 171 (715)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl--~~~~~~---------~~~~~~~l~~~~~~if~~sTyG 171 (715)
++|++++||.. -.+..+|+.+++.+...+. ..+...|+ --|+.+ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999965 4466788888888876542 22222221 111111 112344567789999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
+|..|.-.+..++||... .+.++..++++-|-... +.-.+.-.+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 999999999999999753 58899988888654443 2233556777777888887553
No 138
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=92.34 E-value=0.32 Score=46.79 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=71.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCccc-----------chhH----HHHhhcCCCeEEEEecC
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------EEDE----YEEKLKKENIVFFFLAT 169 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------~~~~----~~~~l~~~~~~if~~sT 169 (715)
.+|.|+|-|.+|.-+.+|+...+.+.+.++.+ ++.-+.+.-. -+.+ -.+.|.+++.++|+.||
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a~geA--~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESAGGEA--TIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhccCCee--EEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 57899999999999999999999988776532 3333322100 0000 13567889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCC
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR 209 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds 209 (715)
- -|.+|.-++.||+.-... -....|.|+..++|=.+-+
T Consensus 80 R-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs 117 (203)
T KOG3135|consen 80 R-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGS 117 (203)
T ss_pred c-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccC
Confidence 9 999999999999852111 1223589999999976543
No 139
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=92.30 E-value=3.7 Score=40.60 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=92.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCccc----chhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
|+|++|.-......+-+.|.+.+... ..+++.||....+ +-....+.+...+.+||..|-| -..+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 78999988876666777777777643 3467888754222 2112235578899999999999 77788877777
Q ss_pred HHHHHhh----cCCCCCcCCceE-EEEeccCCc--hh-----HHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHH
Q 005072 183 YKWFTEQ----KEGGEWLQKLKY-GVFGLGNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 250 (715)
Q Consensus 183 ~~~L~~~----~~~~~~l~~~~~-aVFGlGds~--Y~-----~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~ 250 (715)
++..-.. ...+..|+|+++ .++..|... |. .+...-.-+...+.-+|.+-+-+..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 7654321 112335889976 455566542 31 22333445555666678887666554433333455566
Q ss_pred HHHHHHHHHHHh
Q 005072 251 AWRELVWPELDN 262 (715)
Q Consensus 251 ~W~~~l~~~L~~ 262 (715)
+..++....|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555444444
No 140
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=87.65 E-value=0.64 Score=49.07 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.1
Q ss_pred EeeeecccCCCCCCceeEEEEEeCC-CCCccCCCCeEEEccCC
Q 005072 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 361 (715)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N 361 (715)
+.+++.+++|+|.++++|++|++++ ..+.|+||.++.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4568889999999999999999975 67899999999998764
No 141
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=87.10 E-value=12 Score=37.35 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=93.5
Q ss_pred ceEEEEEeCCC-chHHHHHHHHHHHHHhhcCCce-----eEEec----CCC--cccchhHHHHhhcCCCeEEEEecCCCC
Q 005072 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVVD----IDD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (715)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~d----l~~--~~~~~~~~~~~l~~~~~~if~~sTyG~ 172 (715)
|+|+|+||--- ..+-..++.+.+.+.+.+..+. ...+| ..| +..|-....+++...+.+||.-|-| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 57999999885 3334444444444444432110 11111 122 3333223346788899999999999 5
Q ss_pred CCCChhHHHHHHHHHhhc----CCC----CCcCCceEEEEeccCCchhHHHHHHHH---------HHHHHHHcCCccccc
Q 005072 173 GEPTDNAARFYKWFTEQK----EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 235 (715)
Q Consensus 173 G~~pdna~~F~~~L~~~~----~~~----~~l~~~~~aVFGlGds~Y~~f~~~~k~---------ld~~L~~lGa~~l~~ 235 (715)
...|.-.+.+++..-... ..+ ..|.|+++-++..-+..-+.|...+.. +.-.+.-+|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 566666777766543211 111 468999988887655543444433332 224455567666555
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005072 236 VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 236 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (715)
.-.++.+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 5556666667889999998887776654
No 142
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=86.09 E-value=0.3 Score=54.12 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.7
Q ss_pred EEeccCCch-h-----HHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHHHhhh
Q 005072 203 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 203 VFGlGds~Y-~-----~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 264 (715)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|.. +....+..|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 6999999999999999999999999999854 567788899999999887544
No 143
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.58 E-value=36 Score=32.14 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
++-.|+-++--|..-.+...+...+-+.. .++++++-..-+ .+++.+...+++.=+++.|.. .+..-..+..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~---G~eVi~LG~~vp-~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA---GFEVINLGVMTS-QEEFIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC---CCEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 44567888989998888888777665442 367888865332 234455555666555555555 4445556777777
Q ss_pred HHHhhcCCCCCcCCceEEEEec---cCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHH
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGL---GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (715)
.|++. .+.+.++.|=|- ++..+ ....+.|+++|...+++-+. ..+++..|..+.|
T Consensus 77 ~L~~~-----~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEA-----GLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHhc-----CCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 77653 244565555552 11222 44567888999999987653 2456667766544
No 144
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=81.52 E-value=1.6 Score=48.25 Aligned_cols=142 Identities=9% Similarity=-0.032 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCcee----EEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIF----KVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v----~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~ 180 (715)
.-++|.=+=++|-+..||+.|++.+.+.+...+. .+.|+... ..=+-.+++.+=|.--|.+.+--+
T Consensus 358 alslVgepi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~v----------tqlyvsvda~Tktslk~idrPlfk 427 (601)
T KOG1160|consen 358 ALSLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPV----------TQLYVSVDASTKTSLKKIDRPLFK 427 (601)
T ss_pred eeeeecccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhh----------heeEEEEeecchhhhcCCCCchHH
Confidence 3467777888999999999999988766421110 11111111 012334566666676788899999
Q ss_pred HHHHHHHhhcC---CCCCcCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccc---CCCCCchhhHHHH
Q 005072 181 RFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLG---DDDQCIEDDFSAW 252 (715)
Q Consensus 181 ~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~g---D~~~~~e~~f~~W 252 (715)
+||+||.+... .+....-.|++++|.||+.= ..||.+++-+-.+++-+|++...+.-.- +.+....++|-++
T Consensus 428 dFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~F 507 (601)
T KOG1160|consen 428 DFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEF 507 (601)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHH
Confidence 99999976321 22234556899999999984 7899999999999999999976543221 1222345556555
Q ss_pred HHHH
Q 005072 253 RELV 256 (715)
Q Consensus 253 ~~~l 256 (715)
...|
T Consensus 508 v~eL 511 (601)
T KOG1160|consen 508 VFEL 511 (601)
T ss_pred HHHH
Confidence 5554
No 145
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=70.73 E-value=94 Score=29.32 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHH
Q 005072 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (715)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (715)
+|+-|+--|..-...+.+-..+-+. ..++|+|+--.- ..+++.+...+++.-++++|+. .|.--..+.++.+.|+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~---~GfeVi~LG~~v-~~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTN---AGFNVVNLGVLS-PQEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCD 77 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHH---CCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHH
Confidence 4666888888888887666555433 236888886543 3345666667778778888888 6766677888888887
Q ss_pred hhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHH
Q 005072 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (715)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~ 255 (715)
+.. +.+.. -++| |.-..+.= -...+.++|.++|..++++-+.. .+++..|..+
T Consensus 78 ~~g-----l~~~~-vivG-G~~vi~~~--d~~~~~~~l~~~Gv~~vF~pgt~------~~~iv~~l~~ 130 (134)
T TIGR01501 78 EAG-----LEGIL-LYVG-GNLVVGKQ--DFPDVEKRFKEMGFDRVFAPGTP------PEVVIADLKK 130 (134)
T ss_pred HCC-----CCCCE-EEec-CCcCcChh--hhHHHHHHHHHcCCCEEECcCCC------HHHHHHHHHH
Confidence 642 55544 4555 54332100 01234567899999999876532 4566666543
No 146
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=67.27 E-value=70 Score=29.93 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=73.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHh
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (715)
|+-|+--|..-.+.+.|-..+-+. ..++|+|+--.- ..+++.+...+++.-+++.|+. .|.--..+.+..+.|++
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~---~GfeVidLG~~v-~~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~ 76 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTE---AGFNVVNLGVLS-PQEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDE 76 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHH---CCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHH
Confidence 667888888888887776665443 236889986533 3345666666777777777777 66666788889998876
Q ss_pred hcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005072 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (715)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (715)
.. +.+ +-|+.=|.-.-+ ..-.....++|.++|..++++.|
T Consensus 77 ~g-----l~~--v~vivGG~~~i~--~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 77 AG-----LKD--ILLYVGGNLVVG--KQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred CC-----CCC--CeEEEECCCCCC--hhhhHHHHHHHHHcCCCEEECcC
Confidence 42 444 333333432110 00012244678999999998765
No 147
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=67.19 E-value=11 Score=40.65 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=43.0
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCC
Q 005072 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (715)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (715)
|....|+.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 4456788999999999987777788999999975 47899999999998753
No 148
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=64.87 E-value=13 Score=39.43 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=40.5
Q ss_pred cCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccC
Q 005072 311 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 360 (715)
Q Consensus 311 ~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~ 360 (715)
-...|+.+.|+..+.++.+.+...++++.|+. +..+.|+||.++.|.++
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 4 KPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECC
Confidence 34567788999999998766667899999997 45789999999999865
No 149
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=63.32 E-value=1.1e+02 Score=28.78 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=71.6
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHH
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (715)
++.|+-|+.-|..-+..+.|...+-+.. .++|+|+.-+.. .+++.+...+++.=+++.|+. ++.-.+.+....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~---GfeVi~lg~~~s-~e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADL---GFDVDVGPLFQT-PEEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhC---CcEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHH
Confidence 3567778888888888777777665442 368888876543 234555556666656666666 56667778888888
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (715)
|++.. +...+ |+.=|..- +.-.+.|+++|..+++..|
T Consensus 77 L~~~g-----~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 77 LDKLG-----RPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HHhcC-----CCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 87632 22333 44334332 1122458899999998776
No 150
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=59.29 E-value=3.1 Score=37.30 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHcCCC-----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccC
Q 005072 475 AKPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL 537 (715)
Q Consensus 475 ~~~p~~~~l~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~ 537 (715)
.+..+||++-+.+|.+ +.++|||+|+|. ++.+.+.|+. .|-.|..|.+..
T Consensus 28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~~ 82 (105)
T PF08022_consen 28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHHH
Confidence 3556788876655643 678999999997 5788887753 255566666553
No 151
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=49.83 E-value=11 Score=34.66 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=27.5
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCc
Q 005072 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 557 (715)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F 557 (715)
+...|.|||.+-.. ..+++.|-+.+. ...|.+|.|..+..+|+. +-|..+.+.|
T Consensus 64 ~p~~R~YTvR~~d~-~~~~l~iDfv~H--------g~~Gpas~WA~~A~pGd~------v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDP-ETGELDIDFVLH--------GDEGPASRWARSARPGDR------VGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEET-T--EEEEEEE----------SS--HHHHHHHH--TT-E------EEEEEEE---
T ss_pred CCCCCCcCEeeEcC-CCCEEEEEEEEC--------CCCCchHHHHhhCCCCCE------EEEeCCCCCC
Confidence 44679999988643 235666555332 123899999999999874 6677777766
No 152
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.35 E-value=2.1e+02 Score=25.68 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=63.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHh
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (715)
|+.++--|..-.+...+...+-+.. .++++++.... ...++.+.+.+.+.-+++.|++ .+....++.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~---G~~V~~lg~~~-~~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA---GFEVIDLGVDV-PPEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 5667777777777776666665432 25677776443 3334444455554434444444 45556777888888876
Q ss_pred hcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005072 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (715)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (715)
.. ..+..+.+=|..-+. .. +.++++|+..+++-+
T Consensus 77 ~~-----~~~~~i~vGG~~~~~------~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 77 AG-----LDDIPVLVGGAIVTR------DF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred cC-----CCCCeEEEECCCCCh------hH----HHHHHcCCeEEECCH
Confidence 31 135566555532221 11 467889998887643
No 153
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=43.03 E-value=78 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (715)
++++|+-++-.|++..++.+|.+.+...+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~ 29 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENG 29 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46889999999999999999999997654
No 154
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=40.83 E-value=3.7e+02 Score=30.51 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=74.2
Q ss_pred eEEEEEeCCC---c----hHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhH---HHHhhc--CCCeEEEEecCCCCC
Q 005072 106 KVTIFFGTQT---G----TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE---YEEKLK--KENIVFFFLATYGDG 173 (715)
Q Consensus 106 ~v~I~YgSqt---G----tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~---~~~~l~--~~~~~if~~sTyG~G 173 (715)
+|.++-+||. - .+++.++++.+.|.+. .+++++.+....+.++ ..+.+. +-+.+|+.++|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL----PVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC----CceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 5667777776 3 4566666666666543 2456555544312211 122333 346888889999654
Q ss_pred CCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCC--------chhHHHHHHHHHHHHHHHcCCcccccccccCC-CCC
Q 005072 174 EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR--------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDD-DQC 244 (715)
Q Consensus 174 ~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~-~~~ 244 (715)
.-....++. + ++.+.+++..+. .+..+|+. ..+-..|.++|-+.-+-. |+. |..
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~--g~~~d~~ 140 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVY--GHWKDED 140 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEE--CCCCCHH
Confidence 122223332 2 577888887764 24555643 667788888887754333 443 234
Q ss_pred chhhHHHHHHH
Q 005072 245 IEDDFSAWREL 255 (715)
Q Consensus 245 ~e~~f~~W~~~ 255 (715)
..+.+..|..-
T Consensus 141 ~~~~i~~~~ra 151 (452)
T cd00578 141 VLRKIESWARA 151 (452)
T ss_pred HHHHHHHHHHH
Confidence 56678888764
No 155
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=39.46 E-value=75 Score=29.89 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhh-cCCceeEEecCCCccc-chhH-HHHhhcCCCeEEEEec
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD-EEDE-YEEKLKKENIVFFFLA 168 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~-~~~~-~~~~l~~~~~~if~~s 168 (715)
++|.|.|...+-.=......||+.|++. |-.+.++..+..+... +-.. ....+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4799999997776678889999999987 4222222222222111 1111 1344667777777776
No 156
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.76 E-value=24 Score=34.29 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.5
Q ss_pred cCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005072 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (715)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (715)
+...+++|+=.||+..+.++..+..+..+|++.|+....-....|+...+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 456899999999999887888899999999999997443222233333344444444
No 157
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=38.37 E-value=3e+02 Score=31.00 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcc-cchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA-DEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~-~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
...-+.|.|||.++++++.++.+.+ .+ ..+.++++..+. .+...+.+.+.+.+.++++=-++-.|..-.-..+
T Consensus 267 dad~~iV~~Gs~~~~a~ea~~~L~~----~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~e 340 (407)
T PRK09622 267 DAEVAIVALGTTYESAIVAAKEMRK----EG--IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNE 340 (407)
T ss_pred CCCEEEEEEChhHHHHHHHHHHHHh----CC--CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHH
Confidence 3456888899999999888776644 33 335566665443 2333344556667777777555544444344555
Q ss_pred HHHHHHhhcCCCCCcCCceE---EEEeccCCch--hHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKY---GVFGLGNRQY--EHFNKIAKVVD 222 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~~k~ld 222 (715)
+...|..... +.... .++|+|.+.. +..-.+.+++.
T Consensus 341 v~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~ 381 (407)
T PRK09622 341 VTSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELN 381 (407)
T ss_pred HHHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHH
Confidence 5555543110 01233 6677777665 44444444444
No 158
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.90 E-value=2.7e+02 Score=31.46 Aligned_cols=97 Identities=24% Similarity=0.246 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCc
Q 005072 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWL 196 (715)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l 196 (715)
++++||+.|+++|++.+ + | .++++||+| -.+....-..+.+++
T Consensus 320 ~a~~~g~eIa~~Lk~dg--V----------D---------------AvILtstCg--tCtrcga~m~keiE~-------- 362 (431)
T TIGR01917 320 NSKQFAKEFSKELLAAG--V----------D---------------AVILTSTUG--TCTRCGATMVKEIER-------- 362 (431)
T ss_pred HHHHHHHHHHHHHHHcC--C----------C---------------EEEEcCCCC--cchhHHHHHHHHHHH--------
Confidence 46677777777777543 1 1 577888874 456677777777775
Q ss_pred CCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc-----ccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 197 QKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 197 ~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~-----~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
.|....... .+-..-+..|+.|++| .-+||-....++...-=+.-+-.+|+.+-
T Consensus 363 ~GIPvV~i~--------------~~~pI~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~AL~aL~ 421 (431)
T TIGR01917 363 AGIPVVHIC--------------TVTPIALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEKALKALE 421 (431)
T ss_pred cCCCEEEEe--------------echhHHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 356666665 1223345679999987 44666655555544333444556666553
No 159
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.74 E-value=98 Score=26.14 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.3
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCC
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (715)
++.|+-++-.||+.-++++|.+.+.+.+....+...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence 4788899999999999999999997654332344445544
No 160
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=32.65 E-value=2.3e+02 Score=28.55 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=36.2
Q ss_pred HhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 155 ~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
..+..++.+||.+++ .+..|.+++.+. ....+.+.++.+.| ....+.|.+.|-+..
T Consensus 48 ~~~~~~d~iiftS~~--------av~~~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 48 LAALGADWVIFTSKN--------AVEFLLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred hhCCCCCEEEEECHH--------HHHHHHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 345677876666643 477888888721 22357788888887 455566677786543
No 161
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=31.53 E-value=1e+02 Score=26.48 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEeeeecccCCCCCCceeEEEEEeCC--CCCccCCCCeEEEccC
Q 005072 318 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 360 (715)
Q Consensus 318 a~v~~~~~L~~~~~~r~~~hle~di~~--~~~~Y~~GD~l~V~p~ 360 (715)
+.|+..++++. ++.+++|.+++ ..+.|+||.|+.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 56777777763 58888888874 3478999999999766
No 162
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.24 E-value=46 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 005072 57 ILTTSIAVLIGCVVVFILRR 76 (715)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~ 76 (715)
++..+++++++|++|.+|||
T Consensus 72 li~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 33456778888888998876
No 163
>PRK05907 hypothetical protein; Provisional
Probab=30.79 E-value=4.8e+02 Score=28.20 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=67.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHh------hcCCCeEEEEecCCCCCCCC-hh
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK------LKKENIVFFFLATYGDGEPT-DN 178 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~------l~~~~~~if~~sTyG~G~~p-dn 178 (715)
.++++||+++ +.+.++|.+.+-... ...+|.++++.++ ..+. +....++++--+ +.+. .+
T Consensus 19 ~~y~~~g~~~---~~~~~~l~~~~~~~~----~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~----~~~~~~~ 85 (311)
T PRK05907 19 PAVIVIGSSS---EEDKDIFIELLVSGR----KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA----EKMSSST 85 (311)
T ss_pred ceEEEecCCc---HHHHHHHHHHhCCCc----cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc----ccccccc
Confidence 7999999999 777777766553211 1346777766422 2222 234444444222 2233 35
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005072 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (715)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (715)
...+.+++.+. ......-||.. .+++|.+.-|.+.+ |+. + +. .++...-.+.++..|..+...
T Consensus 86 ~~~L~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v-~~-~~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 86 QEFLIRYARNP------NPHLTLFLFTT---KQECFSSLSKKLSS-----ALC-L-SL-FGEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred HHHHHHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHhh-----cce-e-cc-ccccCCCCHHHHHHHHHHHHH
Confidence 77888888763 12233444543 26777765555543 221 1 00 001122347889999887665
Q ss_pred HHH
Q 005072 259 ELD 261 (715)
Q Consensus 259 ~L~ 261 (715)
...
T Consensus 149 ~~g 151 (311)
T PRK05907 149 ELG 151 (311)
T ss_pred HcC
Confidence 444
No 164
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=30.57 E-value=1.5e+02 Score=29.80 Aligned_cols=75 Identities=29% Similarity=0.362 Sum_probs=39.5
Q ss_pred eEEEEEeCCCc----hHHHHHHHHHHHHHhhcCCceeEEe-cCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHH
Q 005072 106 KVTIFFGTQTG----TAEGFAKALADEARARYDKAIFKVV-DIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (715)
Q Consensus 106 ~v~I~YgSqtG----tae~~A~~la~~l~~~~~~~~v~v~-dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~ 180 (715)
||+|++|+-+| ..+...+.|++.+.+.. ...+.+. |.+.+. .+.|..++++||.... |+--+++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~-~~~v~~~~~~~~~~------~~~L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESE-GFEVTVTEDPDDLT------PENLKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTT-CEEEEECCSGGCTS------HHCHCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCC-CEEEEEEeCcccCC------hhHhcCCCEEEEECCC-CCcCCHHHHH
Confidence 68899998433 22356666666666332 2333332 222222 2468899987766555 2222445567
Q ss_pred HHHHHHHh
Q 005072 181 RFYKWFTE 188 (715)
Q Consensus 181 ~F~~~L~~ 188 (715)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77778774
No 165
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.56 E-value=3.6e+02 Score=30.50 Aligned_cols=78 Identities=24% Similarity=0.209 Sum_probs=46.8
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc-----cc
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VG 237 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~-----~g 237 (715)
.++++||+| -.+....-..+.+++ .|..+.... + +-..-+..||.||+| .-
T Consensus 339 AVILTstCg--tC~r~~a~m~keiE~--------~GiPvv~~~----~----------~~pis~tvGanrivp~~~ip~P 394 (431)
T TIGR01918 339 AVILTSTUG--TCTRCGATMVKEIER--------AGIPVVHMC----T----------VIPIALTVGANRIVPTIAIPHP 394 (431)
T ss_pred EEEEcCCCC--cchhHHHHHHHHHHH--------cCCCEEEEe----e----------cccHhhhcCccceecccCcCCC
Confidence 577888884 456667777777775 356555554 1 112334579999887 44
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 238 LGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 238 ~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
+||-....++...-=+..+-.+|+.+-
T Consensus 395 lGnp~l~~~~e~~~Rr~~v~~AL~aL~ 421 (431)
T TIGR01918 395 LGDPALSKAEEKKLRRKRVEKALKALE 421 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 566665555544433344555666553
No 166
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=28.51 E-value=72 Score=30.89 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=34.9
Q ss_pred hhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch
Q 005072 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY 211 (715)
Q Consensus 156 ~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y 211 (715)
++...+.++|++|-| ++.-|.--+.-++||...=..+ .+--+.|+=+|=|+.+|
T Consensus 83 ki~~aD~ivFvtPqY-N~gypA~LKNAlD~lyheW~gK-PalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 83 KILEADSIVFVTPQY-NFGYPAPLKNALDWLYHEWAGK-PALIVSYGGHGGGRCQY 136 (199)
T ss_pred HHhhcceEEEecccc-cCCCchHHHHHHHHhhhhhcCC-ceEEEEecCCCCchHHH
Confidence 455678899999999 5666666777888887431111 22234566667666666
No 167
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=28.43 E-value=6.4e+02 Score=25.57 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCcc---------------------cc-------hhH
Q 005072 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYA---------------------DE-------EDE 152 (715)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------------~~-------~~~ 152 (715)
|++|+++=+|-.| -+..+++.+.+..++..+...+...||..-. ++ -++
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 4677777777663 3566777777777777666656666663211 10 123
Q ss_pred HHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCchhH----HHHHHHH
Q 005072 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYEH----FNKIAKV 220 (715)
Q Consensus 153 ~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y~~----f~~~~k~ 220 (715)
+.+++...+.+||..|-| +-..|..-+.+++.+.... .+...+.++++.+...==--|.+ ++-...-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 566778889999999999 8888888888888876421 13345788888887531112422 6666777
Q ss_pred HHHHHHHcCCcc
Q 005072 221 VDEILANQGAKR 232 (715)
Q Consensus 221 ld~~L~~lGa~~ 232 (715)
+...|.=+|.+-
T Consensus 160 Lr~ilgF~Gitd 171 (202)
T COG1182 160 LRTILGFLGITD 171 (202)
T ss_pred HHHHhhhcCCCc
Confidence 777777778763
No 168
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=28.13 E-value=2.9e+02 Score=27.55 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 178 NAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 178 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
.+..|.+++.+.. ...+.+.++.++| .+..+.|.+.|.+.++
T Consensus 184 ~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~ 225 (239)
T cd06578 184 TVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVI 225 (239)
T ss_pred HHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 6888999887532 2357788888887 5666777788887655
No 169
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=27.58 E-value=1.8e+02 Score=26.45 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=54.1
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC--Cccc
Q 005072 566 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--TKEY 643 (715)
Q Consensus 566 piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~--~k~y 643 (715)
.++|||=-|++--+.++|++.-. ..+...|+-..+.. |..+ |.. ....++... .|++. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~-------~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv-~r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPA-------DAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWV-PRDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-T-------T-EEEEEEEESSGG-G--------------TEEEEEEE-E-SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCCC-------CCeEEEEEEECChH-hccc---CCC----CCCCEEEEE-eCCCCCchHHH
Confidence 47899999999889999988732 14667777777765 5332 222 222344444 34432 1111
Q ss_pred cchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 644 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 644 Vq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
+.+.+... .+-..+.++|++|- ..|++.+++.|++
T Consensus 67 l~~al~~~-----~~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 LADALRDL-----PLPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHHHHTTS--------SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHh-----hccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 22222211 01146789999998 7899999888874
No 170
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=26.83 E-value=2.4e+02 Score=33.79 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=27.1
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARY 133 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (715)
..+++.|+.+|-.||+..+...|.+.+++.+
T Consensus 377 ~~kkilvVC~sG~GsS~m~~~~l~~~l~~~~ 407 (639)
T PRK15083 377 HVRKIIVACDAGMGSSAMGAGVLRKKVQDAG 407 (639)
T ss_pred ccCEEEEECCCCccHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999998765
No 171
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=26.60 E-value=1.1e+02 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=22.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (715)
++.++-++-.|++..++++|.+.+...+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~ 28 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELG 28 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCC
Confidence 3566777777899999999999998765
No 172
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=26.58 E-value=1.1e+02 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccCCCCC-CceeEEEEEeCCCCCccCCCCeEEEccCC
Q 005072 326 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (715)
Q Consensus 326 L~~~~~~-r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (715)
+..+++. ..+++|+|+.++..+.|+||.++.|.+.+
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444443 37999999987567899999999999765
No 173
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.47 E-value=1.2e+02 Score=26.51 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=25.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYD 134 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (715)
+|++.=||-.||+.-+|+++.+.+.+++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 78899999999999999999999988763
No 174
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.45 E-value=2.3e+02 Score=26.19 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=41.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L 186 (715)
+.+-+|+..|+|+.+|.++.+... ..+..++..++.-.. ...+.+.+++|+++ . .|+-.+.+.+..+++
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t~~~~~~~~~~~ 85 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRLEEKLESLIKEV 85 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-c--CChhHHHHHHHHHHH
Confidence 345588899999999998888642 223444444443211 23345555555554 3 333345577788888
Q ss_pred Hh
Q 005072 187 TE 188 (715)
Q Consensus 187 ~~ 188 (715)
++
T Consensus 86 ~~ 87 (153)
T cd05009 86 KA 87 (153)
T ss_pred HH
Confidence 75
No 175
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.51 E-value=1e+02 Score=30.88 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.2
Q ss_pred CCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 193 ~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
+..++|++++|.|+|+ +++.+-+.|.+.|++-+
T Consensus 23 ~~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 4469999999999883 67888889999999754
No 176
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.27 E-value=98 Score=25.21 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhccC
Q 005072 55 VMILTTSIAVLIG-CVVVFILRRSS 78 (715)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (715)
+++.+.++.+++| .++|.+|++.-
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk~l 42 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQKTL 42 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455666667777 77787776654
No 177
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.49 E-value=49 Score=30.81 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=34.7
Q ss_pred eEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005072 200 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (715)
Q Consensus 200 ~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (715)
+++|+-.||.-+ .-++..+..+.++|++.|.+........|+...+.+.++.|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888888765 44577788999999999987554333344433344444444
No 178
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.46 E-value=5.4e+02 Score=23.35 Aligned_cols=109 Identities=14% Similarity=0.037 Sum_probs=64.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCe-EEEEecCCCCCCCChhHHHHHHHHH
Q 005072 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWFT 187 (715)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-~if~~sTyG~G~~pdna~~F~~~L~ 187 (715)
|+.++--|.--.+...+...+-+.. .++++++....+. +++.+...+.+. +|.+|++ ++.....+..+.+.|+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~---G~~vi~lG~~vp~-e~~~~~a~~~~~d~V~iS~~--~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA---GFEVIYTGLRQTP-EEIVEAAIQEDVDVIGLSSL--SGGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCH-HHHHHHHHHcCCCEEEEccc--chhhHHHHHHHHHHHH
Confidence 4566667777777777777665543 2677888765432 233344444443 4555554 4566667777778777
Q ss_pred hhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 005072 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (715)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~ 238 (715)
+. .+.+.++.+=| . . .+...+++.++|...++..+.
T Consensus 76 ~~-----~~~~i~i~~GG--~-~-------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 EL-----GAGDILVVGGG--I-I-------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred hc-----CCCCCEEEEEC--C-C-------CHHHHHHHHHCCCCEEECCCC
Confidence 63 13344444443 2 1 134457788899988887664
No 179
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.34 E-value=1.2e+02 Score=29.75 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=27.5
Q ss_pred CCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 192 GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 192 ~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
....+.|++++|+|+| ..++.+-++|+.+|++-++
T Consensus 30 ~~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp TBS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred CccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 3446999999999976 5889999999999997543
No 180
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=24.15 E-value=2.3e+02 Score=29.73 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.1
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHH
Q 005072 556 NFKLPADAKVPIIMIGPGTGLAPFRGFLQ 584 (715)
Q Consensus 556 ~F~Lp~~~~~piImIa~GTGIAPfrs~lq 584 (715)
.|..+.. ...|+-+|+|+|+.|+.---+
T Consensus 38 ~~~~~~~-~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 38 AFAPVPK-KGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred hhccccc-CCeEEEecCCcCHHHHHHhcc
Confidence 3443333 677999999999999865544
No 181
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=23.67 E-value=2.4e+02 Score=32.53 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCCceeE--EecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcC
Q 005072 120 GFAKALADEARARYDKAIFK--VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQ 197 (715)
Q Consensus 120 ~~A~~la~~l~~~~~~~~v~--v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~ 197 (715)
.-|..+++.|++.|-. .+. .+.+..+... +..++++.+++-+||-++ . ....|+++|.+...+-..|.
T Consensus 261 ~q~~~l~~~L~~~GA~-v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~-n-------gV~~Ff~~l~~~~~D~R~l~ 330 (474)
T PRK07168 261 NKTSVMKQKLQEAGAE-IYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSA-E-------SVEILMQSCSKYKKDIRSLQ 330 (474)
T ss_pred HHHHHHHHHHHHcCCE-EEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCH-H-------HHHHHHHHHHHcCCChHHhC
Confidence 3455666777666521 111 1222222221 234567888886555443 2 47889999987533223455
Q ss_pred CceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcc
Q 005072 198 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 232 (715)
Q Consensus 198 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 232 (715)
.++|+.| .+..+.|++.|-..
T Consensus 331 -~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 -AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred -CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 7888888 44556677777543
No 182
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=23.47 E-value=3.3e+02 Score=28.62 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHH--HHhhc-CCCeEEEEec-CCCCCCCChhHHHHHHHHHhhcCCC
Q 005072 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKLK-KENIVFFFLA-TYGDGEPTDNAARFYKWFTEQKEGG 193 (715)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l~-~~~~~if~~s-TyG~G~~pdna~~F~~~L~~~~~~~ 193 (715)
..++|+.|++.+.+.+ ..+..++-.+...|.--. +.-+. ..++-++.++ ..+ .-.+....+|=+.|.+.- +
T Consensus 86 ~~eLA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l-~- 160 (268)
T cd07371 86 DVELAEACVEEGRKAG--LVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT-R- 160 (268)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH-H-
Confidence 4678999999998775 333333333332221111 11232 2343233333 232 223344444444554210 0
Q ss_pred CCcCCceEEEEeccCCchh------------HHHHHHHHHHHHHHHc
Q 005072 194 EWLQKLKYGVFGLGNRQYE------------HFNKIAKVVDEILANQ 228 (715)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~------------~f~~~~k~ld~~L~~l 228 (715)
-.+.+++|+|.|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12588999999987752 2335667777777654
No 183
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.81 E-value=1.3e+02 Score=27.89 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=39.0
Q ss_pred hcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCe
Q 005072 657 NMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD---SSKAESMVKNLQMTGRY 710 (715)
Q Consensus 657 ~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~---~~~a~~~v~~l~~~gRy 710 (715)
+|++ +..|---=| ..|..+|.+++.+|+.+--.++ .++..+++++|.++|+.
T Consensus 51 ~WLq-dP~ItshMP-reML~dv~~~~~~il~~llelDI~HTS~~rdll~kl~kEGkl 105 (126)
T PF09921_consen 51 QWLQ-DPMITSHMP-REMLEDVWETLREILEQLLELDIRHTSQFRDLLKKLAKEGKL 105 (126)
T ss_pred HHHc-CchhHhcCC-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 3443 333444447 8999999999999998865554 46889999999999974
No 184
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.44 E-value=1.5e+02 Score=26.02 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=24.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (715)
+++|+++=|+-.+|+ -+++++.+.+..++-
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHCCC
Confidence 468888888877766 588999999988763
No 185
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.92 E-value=6.9e+02 Score=25.07 Aligned_cols=96 Identities=24% Similarity=0.233 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
.++|.|+|+... ..+..++.+.+.+++.+..+ +....+..-..+-......+.....-++++.+.+ +.+..|+
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~ 207 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKLGGEV-VAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYG-----GDAALFL 207 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHcCCEE-EEEeccCCCCccHHHHHHHHHhcCCCEEEEcccc-----chHHHHH
Confidence 578999987654 66777888888877665221 1111111111111122333443322233333332 4678899
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF 214 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f 214 (715)
+.+.+. |....++|+.....+.+
T Consensus 208 ~~~~~~--------g~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 208 KQAREA--------GLKVPIVGGDGAAAPAL 230 (298)
T ss_pred HHHHHc--------CCCCcEEecCccCCHHH
Confidence 888863 33677888776655443
No 186
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=21.65 E-value=3.1e+02 Score=25.45 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=39.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (715)
..+|+|-|.+. -+++.+++.+++.+.+.+ ++|+|+.........+.-.-.+.+.-|++++++
T Consensus 40 ~~~VvVg~D~R-~~s~~~~~~~~~~l~~~G----~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaSh 101 (137)
T PF02878_consen 40 GSRVVVGRDTR-PSSPMLAKALAAGLRANG----VDVIDIGLVPTPALSFAIRQLNADGGIMITASH 101 (137)
T ss_dssp SSEEEEEE-SS-TTHHHHHHHHHHHHHHTT----EEEEEEEEB-HHHHHHHHHHHTESEEEEE--TT
T ss_pred CCeEEEEEccc-CCHHHHHHHHHHHHhhcc----cccccccccCcHHhhhhccccccceeeEEEecC
Confidence 46799999994 567889999999999876 577777643322222222223466778888876
No 187
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=21.46 E-value=1.5e+02 Score=32.93 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=30.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcC-CceeEEecCC
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDID 144 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~-~~~v~v~dl~ 144 (715)
.+|+|+|+.+|-.|-=...|+.|++.+..++. ...+.++|+=
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~ 46 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLF 46 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehH
Confidence 46789999999766667889999999987753 2345555553
No 188
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=21.42 E-value=2.7e+02 Score=28.71 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=38.3
Q ss_pred hcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 157 LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 157 l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
..+.+.++|-+|.. ++.|++.+...... .+.+.+++.+| ....+.+.++|.+...
T Consensus 173 ~~~~d~v~ftS~~~--------v~~~~~~~~~~~~~--~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 173 LGEVDAVVFTSSSA--------VRALLALAPESGIE--FLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred hCCCCEEEEeCHHH--------HHHHHHHccccchh--HhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 34556666666554 88899988764211 56778899888 5666788888987643
No 189
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=21.08 E-value=51 Score=35.18 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=38.4
Q ss_pred CCc-cCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC--cccHHHHHHhcccccC
Q 005072 346 GLT-YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP--PCSLRTALTKYADLLS 419 (715)
Q Consensus 346 ~~~-Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp--p~tl~~~l~~~~Dl~~ 419 (715)
+.+ +++|||+-..+.|...--+. --++.++++.|... -|+. ....+. |||-...|.+|+||..
T Consensus 95 ~vkgfk~Gd~VIp~~a~lGtW~t~----~v~~e~~Li~vd~~----~pl~---~AAT~~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSANLGTWRTE----AVFSESDLIKVDKD----IPLA---SAATLSVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred CcCccCCCCeEeecCCCCccceee----EeecccceEEcCCc----CChh---hhheeccCchHHHHHHHHHHhcCC
Confidence 444 99999999999996532221 11344555544311 1111 112233 8999999999999964
No 190
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.78 E-value=2.7e+02 Score=24.49 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (715)
+++|+..=|+--||+-.++.++.+.|++.+....+....++++.. ....+ =||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~-------~~~~a--Diiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA-------LTDGA--DIIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc-------CCCcc--cEEEEehH
Confidence 467888899999999999999999999987555666666666553 22333 36666665
No 191
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=20.70 E-value=3e+02 Score=27.97 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=23.9
Q ss_pred cccHHHHHHh-cccccC-CccHHHHHHHHHhCCCHHHHHHH
Q 005072 404 PCSLRTALTK-YADLLS-SPKKSALLALAAHASDPTEADRL 442 (715)
Q Consensus 404 p~tl~~~l~~-~~Dl~~-~p~k~~l~~la~~~~d~~e~~~L 442 (715)
+++=++.|+| |+||+| +|+..-++.+.. -++++-+++|
T Consensus 21 ~add~~~lRRv~LDL~G~~PT~eEv~~Fl~-d~~~~kr~~l 60 (208)
T PF07583_consen 21 PADDATFLRRVYLDLTGLPPTPEEVRAFLA-DPSPDKREKL 60 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHh-CCChhHHHHH
Confidence 5677888888 899999 566665555433 2333334444
No 192
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.58 E-value=1.8e+02 Score=24.84 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCC
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (715)
++|.++.||--||+..++.+|.+.+...+....+.-.++++
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~ 41 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDE 41 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhh
Confidence 46899999999999999999999998655333333344433
No 193
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=20.50 E-value=2e+02 Score=22.98 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=33.6
Q ss_pred EEeCCchhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 005072 666 YVCGDAKSMARDVHRTLHTIVQEQG-----SLDSSKAESMVKNLQM 706 (715)
Q Consensus 666 YvCGpa~~M~~~V~~~L~~i~~~~~-----~~~~~~a~~~v~~l~~ 706 (715)
++-|+ .+|...=...|+.+..+.| +++..+|.+.|..|+.
T Consensus 9 w~tGD-ePmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~ 53 (57)
T PF11272_consen 9 WVTGD-EPMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQA 53 (57)
T ss_pred ccCCC-CCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 57898 7899888888888887764 5788999999999986
No 194
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=20.44 E-value=1.8e+02 Score=29.38 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=29.8
Q ss_pred eEEEeeeecccCCCCCCceeEEEEEeCCC-CCccCCCCeEEEccCC
Q 005072 317 RSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCEN 361 (715)
Q Consensus 317 ~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N 361 (715)
.++|+..+.++. .++++.|+++.. .+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 466777777753 478888887553 5799999999998654
No 195
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.36 E-value=5.7e+02 Score=26.36 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 155 ~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
.++..++.+||.+++- .+.|.++|.... ..+.+.+++..| ++..+.|.+.|-+..+
T Consensus 51 ~~l~~~d~iifTS~na--------V~~~~~~l~~~~---~~~~~~~~~aVG-------------~~Ta~al~~~G~~~~~ 106 (255)
T PRK05752 51 LELDRYCAVIVVSKPA--------ARLGLELLDRYW---PQPPQQPWFSVG-------------AATAAILQDYGLDVSY 106 (255)
T ss_pred hcCCCCCEEEEECHHH--------HHHHHHHHHhhC---CCCcCCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 4567888766665432 566788886532 123457787777 4455666677765444
Done!