Query 005072
Match_columns 715
No_of_seqs 460 out of 2881
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 7E-114 2E-118 999.2 63.2 590 103-715 17-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 1E-108 4E-113 964.7 58.3 586 100-715 45-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 5E-104 2E-108 925.9 57.3 588 101-715 8-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 1.4E-85 4.7E-90 733.5 48.2 429 279-715 21-457 (458)
5 2qtl_A MSR;, methionine syntha 100.0 1.3E-80 4.3E-85 707.7 42.3 407 306-715 105-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 5.5E-78 1.9E-82 663.1 39.4 382 314-715 5-391 (393)
7 1f20_A Nitric-oxide synthase; 100.0 3E-76 1E-80 658.2 41.7 397 309-715 24-433 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 2.7E-74 9.3E-79 630.5 39.8 367 309-715 5-374 (374)
9 1fnb_A Ferredoxin-NADP+ reduct 100.0 5.8E-37 2E-41 327.9 26.8 273 309-715 31-314 (314)
10 2bmw_A Ferredoxin--NADP reduct 100.0 1.4E-36 4.9E-41 323.2 27.8 274 309-715 15-304 (304)
11 2b5o_A FNR, ferredoxin--NADP r 100.0 2.1E-35 7.3E-40 326.2 27.1 274 309-715 116-402 (402)
12 3vo2_A Putative uncharacterize 100.0 1.7E-35 5.7E-40 316.2 18.9 226 478-715 67-310 (310)
13 2rc5_A Ferredoxin-NADP reducta 100.0 5.1E-34 1.7E-38 305.0 24.7 277 310-715 16-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 4.5E-34 1.5E-38 305.0 18.2 228 476-715 60-311 (311)
15 3hr4_A Nitric oxide synthase, 100.0 6.8E-34 2.3E-38 286.3 16.3 154 102-267 38-191 (219)
16 3jqq_A Ferredoxin NADP reducta 100.0 1.2E-31 4.2E-36 287.0 24.0 291 309-715 9-316 (316)
17 1bvy_F Protein (cytochrome P45 99.9 1E-27 3.6E-32 237.8 14.8 148 102-261 19-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 7E-26 2.4E-30 220.0 14.0 150 103-264 8-157 (167)
19 1tvc_A Methane monooxygenase c 99.9 5.6E-25 1.9E-29 227.1 16.2 184 476-685 43-232 (250)
20 2hna_A Protein MIOC, flavodoxi 99.9 6.4E-26 2.2E-30 215.4 6.7 144 104-260 1-146 (147)
21 2r6h_A NADH:ubiquinone oxidore 99.9 1.1E-24 3.8E-29 229.6 14.3 181 490-685 84-277 (290)
22 1qfj_A Protein (flavin reducta 99.9 1.3E-24 4.5E-29 221.6 13.4 182 476-684 29-216 (232)
23 2eix_A NADH-cytochrome B5 redu 99.9 1.4E-24 4.7E-29 223.0 13.1 186 476-685 41-233 (243)
24 1fdr_A Flavodoxin reductase; f 99.9 2E-24 6.8E-29 222.4 12.4 187 476-685 30-229 (248)
25 1umk_A B5R, NADH-cytochrome B5 99.9 1.6E-24 5.3E-29 226.8 10.6 194 477-685 47-265 (275)
26 4eh1_A Flavohemoprotein; struc 99.9 5.6E-24 1.9E-28 218.3 14.3 183 476-686 33-224 (243)
27 1krh_A Benzoate 1,2-dioxygenas 99.9 8.4E-24 2.9E-28 228.1 15.0 181 476-685 138-323 (338)
28 1gvh_A Flavohemoprotein; oxido 99.9 1.1E-23 3.9E-28 231.9 15.8 180 477-685 183-378 (396)
29 4fk8_A Ferredoxin--NADP reduct 99.9 1.1E-24 3.6E-29 227.7 5.1 204 476-715 46-268 (271)
30 3f6r_A Flavodoxin; FMN binding 99.9 1.2E-23 4E-28 199.7 11.4 142 104-259 1-147 (148)
31 4g1v_A Flavohemoglobin; three 99.9 3.7E-23 1.3E-27 228.2 15.8 183 477-685 184-378 (399)
32 2bgi_A Ferredoxin-NADP(H) redu 99.9 1.3E-23 4.4E-28 219.9 11.4 187 476-685 43-248 (272)
33 2cnd_A NADH-dependent nitrate 99.9 1.3E-23 4.6E-28 219.0 10.0 194 476-684 42-258 (270)
34 1ep3_B Dihydroorotate dehydrog 99.9 2.4E-23 8.1E-28 216.7 11.2 171 477-684 34-211 (262)
35 2qdx_A Ferredoxin reductase; o 99.9 1.1E-23 3.9E-28 218.2 8.4 187 476-685 30-234 (257)
36 1cqx_A Flavohemoprotein; globi 99.9 3.7E-23 1.3E-27 228.4 12.8 187 477-685 185-384 (403)
37 2pia_A Phthalate dioxygenase r 99.9 4.3E-22 1.5E-26 213.4 10.6 174 476-684 38-214 (321)
38 1f4p_A Flavodoxin; electron tr 99.8 2E-21 6.9E-26 183.9 11.3 141 105-258 1-145 (147)
39 2wc1_A Flavodoxin; electron tr 99.8 1.3E-21 4.5E-26 192.4 8.0 147 104-264 1-180 (182)
40 1yob_A Flavodoxin 2, flavodoxi 99.8 3.2E-21 1.1E-25 189.2 9.1 143 105-261 1-176 (179)
41 2fcr_A Flavodoxin; electron tr 99.8 1.7E-20 5.9E-25 182.9 13.1 140 106-260 1-171 (173)
42 1ag9_A Flavodoxin; electron tr 99.8 1.1E-20 3.9E-25 184.6 10.7 143 105-262 1-169 (175)
43 2bmv_A Flavodoxin; electron tr 99.8 6.3E-21 2.1E-25 184.3 7.5 137 104-259 1-162 (164)
44 1obo_A Flavodoxin; electron tr 99.8 6.5E-20 2.2E-24 177.7 12.0 142 105-261 2-168 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 8.7E-20 3E-24 176.8 10.8 142 105-260 1-167 (169)
46 5nul_A Flavodoxin; electron tr 99.7 1.7E-17 5.9E-22 155.1 13.9 132 107-256 1-135 (138)
47 2gpj_A Siderophore-interacting 99.7 1.4E-17 4.7E-22 172.3 7.3 168 477-683 39-211 (252)
48 2xod_A NRDI protein, NRDI; fla 99.7 3.2E-17 1.1E-21 149.9 7.0 116 107-257 1-117 (119)
49 3hly_A Flavodoxin-like domain; 99.7 2.1E-16 7.2E-21 152.2 10.6 142 105-262 1-144 (161)
50 3fni_A Putative diflavin flavo 99.7 2.8E-16 9.5E-21 151.1 10.4 143 104-262 4-149 (159)
51 3a1f_A Cytochrome B-245 heavy 99.6 1.8E-16 6E-21 155.1 7.4 133 552-686 5-170 (186)
52 3lyu_A Putative hydrogenase; t 99.6 9E-16 3.1E-20 144.8 8.4 119 549-685 4-130 (142)
53 2fz5_A Flavodoxin; alpha/beta 99.6 5E-15 1.7E-19 137.6 13.4 131 107-257 2-135 (137)
54 3lrx_A Putative hydrogenase; a 99.6 5.8E-16 2E-20 148.7 7.1 119 549-685 9-135 (158)
55 1rlj_A NRDI protein; flavoprot 99.6 4.8E-16 1.7E-20 145.9 6.0 120 105-258 9-129 (139)
56 1e5d_A Rubredoxin\:oxygen oxid 99.3 5.9E-12 2E-16 138.1 13.9 146 104-263 252-399 (402)
57 1ycg_A Nitric oxide reductase; 99.3 3.4E-12 1.1E-16 139.8 11.9 118 104-235 251-368 (398)
58 4dik_A Flavoprotein; TM0755, e 99.3 4E-12 1.4E-16 140.2 12.1 121 103-235 264-385 (410)
59 2ark_A Flavodoxin; FMN, struct 99.3 2.7E-11 9.1E-16 119.2 15.2 150 103-264 3-169 (188)
60 2a5l_A Trp repressor binding p 99.3 2.2E-11 7.7E-16 120.3 14.5 128 104-235 5-145 (200)
61 3n3a_C Protein NRDI; ribonucle 99.3 8.3E-12 2.8E-16 117.3 10.2 98 104-226 20-122 (153)
62 2q9u_A A-type flavoprotein; fl 99.2 8.5E-11 2.9E-15 129.6 15.2 146 103-262 255-405 (414)
63 2ohh_A Type A flavoprotein FPR 99.2 5E-11 1.7E-15 130.8 11.9 147 102-259 254-401 (404)
64 3b6i_A Flavoprotein WRBA; flav 99.2 1.7E-10 5.9E-15 113.8 13.7 126 104-234 1-140 (198)
65 3klb_A Putative flavoprotein; 99.1 1.3E-10 4.6E-15 111.6 11.1 133 104-256 4-160 (162)
66 3d7n_A Flavodoxin, WRBA-like p 99.1 2.7E-10 9.1E-15 112.6 12.5 121 103-233 5-126 (193)
67 2zki_A 199AA long hypothetical 99.1 4.5E-10 1.6E-14 111.0 13.3 124 104-234 4-143 (199)
68 1ydg_A Trp repressor binding p 99.1 2.1E-10 7.2E-15 114.6 10.8 128 103-235 5-152 (211)
69 4ici_A Putative flavoprotein; 99.1 4.2E-10 1.4E-14 109.2 11.6 134 102-256 11-168 (171)
70 2vzf_A NADH-dependent FMN redu 99.0 5E-10 1.7E-14 110.9 9.7 122 104-234 2-137 (197)
71 1t5b_A Acyl carrier protein ph 98.9 7.6E-09 2.6E-13 102.0 14.5 158 104-263 1-198 (201)
72 3edo_A Flavoprotein, putative 98.8 6.1E-09 2.1E-13 98.7 8.4 127 104-253 3-150 (151)
73 1sqs_A Conserved hypothetical 98.7 1.1E-07 3.7E-12 97.1 13.7 152 104-261 1-178 (242)
74 1rtt_A Conserved hypothetical 98.7 8.3E-08 2.8E-12 94.4 12.0 124 104-234 6-143 (193)
75 1t0i_A YLR011WP; FMN binding p 98.7 1.5E-07 5E-12 92.3 13.3 121 105-235 1-150 (191)
76 3gfs_A FMN-dependent NADPH-azo 98.6 9E-08 3.1E-12 92.6 10.5 114 105-233 1-130 (174)
77 2hpv_A FMN-dependent NADH-azor 98.6 6.4E-07 2.2E-11 89.0 13.9 157 104-262 1-203 (208)
78 2q62_A ARSH; alpha/beta, flavo 98.5 2.6E-06 8.9E-11 87.3 15.6 127 102-233 32-169 (247)
79 1rli_A Trp repressor binding p 98.4 2E-06 6.8E-11 83.4 12.9 125 103-235 2-153 (184)
80 2fzv_A Putative arsenical resi 98.3 5E-06 1.7E-10 86.5 14.2 127 102-233 56-194 (279)
81 3fvw_A Putative NAD(P)H-depend 98.3 7.2E-06 2.5E-10 80.6 14.7 126 104-235 2-145 (192)
82 3r6w_A FMN-dependent NADH-azor 98.3 1E-05 3.4E-10 80.7 15.1 158 104-263 1-208 (212)
83 3rpe_A MDAB, modulator of drug 98.3 2.2E-05 7.5E-10 78.7 17.3 157 102-264 23-216 (218)
84 3k1y_A Oxidoreductase; structu 98.2 8.1E-06 2.8E-10 80.3 12.4 125 102-233 9-152 (191)
85 4hs4_A Chromate reductase; tri 98.2 2.3E-05 8E-10 77.5 14.7 124 104-234 6-144 (199)
86 3lcm_A SMU.1420, putative oxid 98.1 1.5E-05 5.1E-10 78.6 11.8 156 105-264 1-189 (196)
87 3f2v_A General stress protein 98.1 3.7E-05 1.3E-09 75.6 13.2 158 104-264 1-182 (192)
88 1d4a_A DT-diaphorase, quinone 98.1 4.7E-05 1.6E-09 79.0 14.7 158 104-264 2-215 (273)
89 3p0r_A Azoreductase; structura 98.0 4.5E-05 1.6E-09 76.1 13.7 158 104-263 4-207 (211)
90 2amj_A Modulator of drug activ 98.0 0.00013 4.5E-09 72.3 16.6 150 103-256 11-199 (204)
91 3s2y_A Chromate reductase; ura 97.3 7.8E-07 2.7E-11 88.2 0.0 124 104-234 6-144 (199)
92 3tem_A Ribosyldihydronicotinam 97.9 9.3E-05 3.2E-09 74.8 13.7 158 105-265 2-215 (228)
93 3u7r_A NADPH-dependent FMN red 97.8 0.00065 2.2E-08 66.6 17.0 124 104-233 2-138 (190)
94 3u7i_A FMN-dependent NADH-azor 97.8 0.00033 1.1E-08 70.5 14.8 161 103-264 3-214 (223)
95 3svl_A Protein YIEF; E. coli C 97.7 0.00034 1.2E-08 68.7 13.8 155 103-264 3-183 (193)
96 3ha2_A NADPH-quinone reductase 97.7 0.00034 1.2E-08 67.8 13.1 151 105-263 1-167 (177)
97 3l9w_A Glutathione-regulated p 97.3 0.0018 6.2E-08 71.1 14.1 158 103-264 235-408 (413)
98 4gi5_A Quinone reductase; prot 97.0 0.0072 2.5E-07 62.7 13.5 159 103-264 21-242 (280)
99 3vo2_A Putative uncharacterize 81.8 2.4 8.1E-05 44.0 7.2 52 309-361 27-78 (310)
100 1ccw_A Protein (glutamate muta 65.9 12 0.00042 33.7 6.8 111 108-237 5-120 (137)
101 1tvm_A PTS system, galactitol- 65.3 14 0.00047 32.3 6.8 46 102-147 19-64 (113)
102 3lo8_A Ferredoxin--NADP reduct 53.0 23 0.0008 36.2 7.0 51 310-361 23-73 (311)
103 1e2b_A Enzyme IIB-cellobiose; 45.2 37 0.0013 29.2 5.9 58 104-170 3-60 (106)
104 2l2t_A Receptor tyrosine-prote 43.5 29 0.001 25.2 4.1 15 65-79 25-39 (44)
105 2l2q_A PTS system, cellobiose- 43.2 29 0.001 29.8 5.0 55 105-168 5-59 (109)
106 3rht_A (gatase1)-like protein; 42.2 38 0.0013 34.1 6.4 75 103-187 3-77 (259)
107 2jwa_A Receptor tyrosine-prote 39.0 31 0.0011 25.0 3.6 18 62-79 23-40 (44)
108 2ks1_B Epidermal growth factor 38.6 37 0.0013 24.6 4.0 13 66-78 27-39 (44)
109 3czc_A RMPB; alpha/beta sandwi 34.8 33 0.0011 29.6 4.0 42 104-145 18-60 (110)
110 3s2u_A UDP-N-acetylglucosamine 33.8 27 0.00091 36.7 3.9 26 565-590 3-30 (365)
111 3ju3_A Probable 2-oxoacid ferr 33.1 35 0.0012 29.8 3.9 58 103-166 13-71 (118)
112 1t0b_A THUA-like protein; treh 29.0 2.3E+02 0.0079 28.1 9.7 91 104-207 7-106 (252)
113 1mkz_A Molybdenum cofactor bio 29.0 42 0.0014 31.4 3.9 57 196-252 8-64 (172)
114 3no5_A Uncharacterized protein 27.5 99 0.0034 31.4 6.7 109 117-241 122-232 (275)
115 1vkr_A Mannitol-specific PTS s 25.5 1.1E+02 0.0037 27.1 5.8 44 103-146 12-56 (125)
116 2xpn_B SPT6, chromatin structu 23.8 33 0.0011 21.4 1.3 12 198-209 3-14 (26)
117 3pzy_A MOG; ssgcid, seattle st 23.5 34 0.0012 31.9 2.1 57 196-253 5-63 (164)
118 3c6c_A 3-keto-5-aminohexanoate 23.4 1E+02 0.0035 32.0 5.9 88 117-212 164-252 (316)
119 2y7e_A 3-keto-5-aminohexanoate 23.1 97 0.0033 31.6 5.6 111 116-241 126-238 (282)
120 3td9_A Branched chain amino ac 22.6 2.9E+02 0.0099 27.9 9.5 79 103-189 148-227 (366)
121 3chv_A Prokaryotic domain of u 22.4 75 0.0025 32.5 4.6 108 116-241 125-236 (284)
122 4e5v_A Putative THUA-like prot 22.4 4.2E+02 0.014 26.6 10.3 80 104-188 4-85 (281)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=6.5e-114 Score=999.19 Aligned_cols=590 Identities=41% Similarity=0.753 Sum_probs=515.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhc--CCCeEEEEecCCCCCCCChhHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDNAA 180 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~~if~~sTyG~G~~pdna~ 180 (715)
..++|+|+|||||||||.+|++|++++.+.+ ..++++|+++++.++ ...+. +++++||++||||+|++|+||.
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT~G~G~~pd~~~ 91 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLAD---LSSLPEIDNALVVFCMATYGEGDPTDNAQ 91 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEECBGGGBCCGGGH
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHH---hhhcccccCcEEEEEcCccCCCCCCHHHH
Confidence 4567999999999999999999999998776 457889999998654 12222 4789999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHH
Q 005072 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (715)
.|++||.+.. ..|+|++||||||||++|+|||.++|.++++|+++||++++|+|+||++.+++++|++|++.+|++|
T Consensus 92 ~F~~~L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~l 168 (618)
T 3qe2_A 92 DFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAV 168 (618)
T ss_dssp HHHHHHHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHHH
Confidence 9999998632 4699999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HhhhCCCCCCCCCCCCccccccceEEEEecCCCcc---ccc--cccCCCCCCccccCCCCeeEEEeeeecccCCCCCCce
Q 005072 261 DNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSC 335 (715)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~ 335 (715)
.+.++.+... . ....+.|++......... ..+ ......+....|+.++|+.|+|+.|++|+. .++|+|
T Consensus 169 ~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~~ 241 (618)
T 3qe2_A 169 CEHFGVEATG--E----ESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHL 241 (618)
T ss_dssp HHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSCE
T ss_pred HHHhCCCccc--c----cccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCcE
Confidence 9988533211 0 112356666654321110 000 000112234467788999999999999985 578999
Q ss_pred eEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhc
Q 005072 336 THLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKY 414 (715)
Q Consensus 336 ~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp-p~tl~~~l~~~ 414 (715)
+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.+.++...+. ...+.||| |||++++|++|
T Consensus 242 ~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~~ 315 (618)
T 3qe2_A 242 MHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYY 315 (618)
T ss_dssp EEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHHT
T ss_pred EEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhhE
Confidence 999999999999999999999999999999999999999999999999865431 23466899 99999999999
Q ss_pred ccccCCccHHHHHHHHHhCCCHHHHHHHHHhc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcc
Q 005072 415 ADLLSSPKKSALLALAAHASDPTEADRLRHLA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQP 492 (715)
Q Consensus 415 ~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~--s~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~p 492 (715)
+||+++|+|+||+.||+||+|+.||++|++|+ +++|+++|.+|+...+++++|||++||++++|+++|++. +|+++|
T Consensus 316 ~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~p 394 (618)
T 3qe2_A 316 LDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQA 394 (618)
T ss_dssp BCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCC
T ss_pred eecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-cccccc
Confidence 99999999999999999999999999999999 788999999999999999999999999999999999975 599999
Q ss_pred cccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCC-CCCCCCCceeeEEEecCCcccCCCCCCCeEEEe
Q 005072 493 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 571 (715)
Q Consensus 493 R~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~-g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImIa 571 (715)
|+|||||+|..++++++|+|+++.++++.++.+.|+||+||+++.+ |+. .....++|++|.|+|++|.++.+|+||||
T Consensus 395 R~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piimIg 473 (618)
T 3qe2_A 395 RYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIMVG 473 (618)
T ss_dssp EEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEEEC
T ss_pred ceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEEEc
Confidence 9999999998778999999999989888899999999999999988 441 11126899999999999988889999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhc
Q 005072 572 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEK 651 (715)
Q Consensus 572 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~ 651 (715)
+||||||||+|+|++.+.+..+...++++||||||+++.|++|++||++|.+.+.+++++++|||++..|+||||+|.++
T Consensus 474 ~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~~ 553 (618)
T 3qe2_A 474 PGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQD 553 (618)
T ss_dssp CGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHT
T ss_pred CCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHHh
Confidence 99999999999999987655444458999999999995599999999999999998899999999988899999999999
Q ss_pred hhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 652 SSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 652 ~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
.+.+++++.++++||||||+++|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 554 ~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 554 REHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 9999998888999999999559999999999999999999999999999999999999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=1.3e-108 Score=964.74 Aligned_cols=586 Identities=33% Similarity=0.600 Sum_probs=505.5
Q ss_pred cccCCceEEEEEeCCCchHHHHHHHHHHHHH-hhcCCceeEEecCCCcccchhHHHHhhcCC-CeEEEEecCCCCCCCCh
Q 005072 100 VDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPTD 177 (715)
Q Consensus 100 ~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~~if~~sTyG~G~~pd 177 (715)
.+..+++++|+|||||||||++|++|++++. +.+ ..++++|+++++.+ ++.++ +.+||++||||+|++|+
T Consensus 45 ~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p~ 116 (682)
T 2bpo_A 45 VTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFPD 116 (682)
T ss_dssp HHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCCS
T ss_pred HhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCCH
Confidence 3456789999999999999999999999998 555 45789999999863 46678 99999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC-CchhhHHHHHHHH
Q 005072 178 NAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWRELV 256 (715)
Q Consensus 178 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~-~~e~~f~~W~~~l 256 (715)
||..|++||.... ...|++++||||||||++|+|||.++|.++++|+++||+++.+++++|++. +.+++|++|.++|
T Consensus 117 ~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l 194 (682)
T 2bpo_A 117 GAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSI 194 (682)
T ss_dssp SCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHH
Confidence 9999999998642 235999999999999999999999999999999999999999999999874 7899999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCccccccc---cCC--------CCCCccccCCCCeeEEEeee
Q 005072 257 WPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAVR 323 (715)
Q Consensus 257 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~~ 323 (715)
|++|.+.+..+... . ...|.+++...+. ......+.. ... .+....|+..+|+.|+|+.+
T Consensus 195 ~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~ 267 (682)
T 2bpo_A 195 LEVLKDELHLDEQE----A---KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKS 267 (682)
T ss_dssp HHHHHHHTTCCCCC----C---CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEEE
T ss_pred HHHHHhhcCCcccc----c---ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEEE
Confidence 99999887532211 0 1123344433221 000000000 000 11234577889999999999
Q ss_pred ecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC
Q 005072 324 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 403 (715)
Q Consensus 324 ~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp 403 (715)
++|++ .++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..++ ..+.|||
T Consensus 268 ~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~p 338 (682)
T 2bpo_A 268 RELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPFP 338 (682)
T ss_dssp EECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSSC
T ss_pred EEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCCC
Confidence 99998 88999999999999999999999999999999999999999999999999999875432 2456899
Q ss_pred -cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCCC
Q 005072 404 -PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKPP 478 (715)
Q Consensus 404 -p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~fp----s~~~p 478 (715)
|||++++|++|+||+++|+|.+|+.||+||+|++||++|++|+ +|+++|.+|+...++|++|||.+|| ++++|
T Consensus 339 ~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p 416 (682)
T 2bpo_A 339 TPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVP 416 (682)
T ss_dssp SSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSC
T ss_pred CCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCC
Confidence 9999999999999999999999999999999999999999998 6999999999999999999999999 88999
Q ss_pred hHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC---CcccccccchhhhccCCC------------CCCC
Q 005072 479 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKSN 543 (715)
Q Consensus 479 ~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~---gr~~~G~~S~~L~~l~~g------------~~~~ 543 (715)
++++++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.++ +...
T Consensus 417 ~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~ 495 (682)
T 2bpo_A 417 MQFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYD 495 (682)
T ss_dssp HHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCC
T ss_pred HHHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccccccee
Confidence 9999875 69999999999999987789999999988887775 678899999999997762 2111
Q ss_pred C--------CceeeEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh------cCCCCCCEEEEEeeccCC
Q 005072 544 D--------CSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRK 609 (715)
Q Consensus 544 ~--------~~~v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~------~~~~~~~~~Lf~G~R~~~ 609 (715)
. +..++++++.++|+||.++.+|+||||+||||||||||+|++...+. .+...++++||||||++.
T Consensus 496 i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~ 575 (682)
T 2bpo_A 496 LNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD 575 (682)
T ss_dssp SSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSS
T ss_pred eccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChh
Confidence 1 13688999989999998888999999999999999999999987664 333458999999999995
Q ss_pred cccccHHHHHHHH-HcCCCcEEEEEEec-CCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHH
Q 005072 610 MDYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 687 (715)
Q Consensus 610 ~D~ly~dEL~~~~-~~~~~~~l~~a~Sr-~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~ 687 (715)
|++|++||++|+ +.+.+++++++||| ++..++||||+|.++.+.+++++.++++||||||+++|+++|+++|.+|++
T Consensus 576 -D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~ 654 (682)
T 2bpo_A 576 -DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILS 654 (682)
T ss_dssp -SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHH
Confidence 999999999995 55778899999999 566799999999999999999887899999999977999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 688 EQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 688 ~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
++++++.++|++|+++|+++|||++|||
T Consensus 655 ~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 655 RGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 9999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=5e-104 Score=925.87 Aligned_cols=588 Identities=31% Similarity=0.579 Sum_probs=495.9
Q ss_pred ccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHH
Q 005072 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (715)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~ 180 (715)
...+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ ++..++++||++||||+|+||+|++
T Consensus 8 ~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~ 78 (688)
T 1tll_A 8 MAKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGE 78 (688)
T ss_dssp -CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGH
T ss_pred hcCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHH
Confidence 345678999999999999999999999986 33 56899999999864 4678899999999999999999999
Q ss_pred HHHHHHHhhcC---------------------------------------CCCCcCCceEEEEeccCCchhHHHHHHHHH
Q 005072 181 RFYKWFTEQKE---------------------------------------GGEWLQKLKYGVFGLGNRQYEHFNKIAKVV 221 (715)
Q Consensus 181 ~F~~~L~~~~~---------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~~k~l 221 (715)
.|++||.+... ....|+|++||||||||++|+|||+++|.+
T Consensus 79 ~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~l 158 (688)
T 1tll_A 79 KFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAV 158 (688)
T ss_dssp HHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHH
Confidence 99999987520 023589999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCC---C---CCc-cccccceEEEEecCCCc
Q 005072 222 DEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTV---S---TPY-TAAISEYRVVFYDNADA 294 (715)
Q Consensus 222 d~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~~ 294 (715)
|++|+++||++++++++||+..+.|++|++|.+++|++|++.+......... . .+. ....+.+++........
T Consensus 159 d~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (688)
T 1tll_A 159 DTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPD 238 (688)
T ss_dssp HHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCC
T ss_pred HHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEeccccccc
Confidence 9999999999999999999987889999999999999999876432211000 0 000 00123455544221100
Q ss_pred cccccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCC-CCccCCCCeEEEccCCCHHHHHHHHHHc
Q 005072 295 SVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL 373 (715)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l 373 (715)
. . .....+...+|+.++|+.+++|+.++++|+|+||+||++++ +++|+|||||+|||.|+++.|+++|++|
T Consensus 239 ~--~------~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l 310 (688)
T 1tll_A 239 L--T------QGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERL 310 (688)
T ss_dssp H--H------HHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTC
T ss_pred c--c------ccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHh
Confidence 0 0 00112445789999999999999999999999999999875 7999999999999999999999999999
Q ss_pred CC--CCCcEEEEecCCCCCCCCC---CCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCc
Q 005072 374 GL--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASP 448 (715)
Q Consensus 374 ~l--~~d~~~~i~~~~~~~~~~~---~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~ 448 (715)
|+ ++|+.+.++..++...|.+ ....+.+|||||++++|++|+||+++|+|.||+.||+||+|+.||++|++|++
T Consensus 311 ~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~- 389 (688)
T 1tll_A 311 EDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK- 389 (688)
T ss_dssp SSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT-
T ss_pred CCCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc-
Confidence 86 6789998875322222211 11234578899999999999999999999999999999999999999999986
Q ss_pred cCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--Ccccc
Q 005072 449 AGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHK 526 (715)
Q Consensus 449 ~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--gr~~~ 526 (715)
++++|.+|+...+++++|||.+||++++|+++++.. +|++++|+|||||+|..+++.++|+|+++.+.++. |+.+.
T Consensus 390 -~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~ 467 (688)
T 1tll_A 390 -GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHH 467 (688)
T ss_dssp -CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEE
T ss_pred -CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCC
Confidence 789999999999999999999999999999988875 69999999999999986678999999988776654 46788
Q ss_pred cccchhhhccCCCCCCCCCceeeEEEe-cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCCEEEEEe
Q 005072 527 GLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFG 604 (715)
Q Consensus 527 G~~S~~L~~l~~g~~~~~~~~v~v~v~-~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G 604 (715)
|.||+||+++.+|+ .++|+++ .+.|++|.++.+|+||||+|||||||++|+|++..... .+...++++||||
T Consensus 468 G~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G 541 (688)
T 1tll_A 468 GVCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFG 541 (688)
T ss_dssp CHHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEE
T ss_pred CchhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEE
Confidence 99999999987765 5889885 56999998888999999999999999999999987532 1223479999999
Q ss_pred eccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-ccccchhhhhc-hhHHHhcc-cCCcEEEEeCCchhhHHHHHHH
Q 005072 605 CRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRT 681 (715)
Q Consensus 605 ~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~-k~yVq~~l~~~-~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~ 681 (715)
||+++.|++|++||++|.+.+.+++++++|||++.. ++||||+|.++ ...++.++ .++++|||||| .+|+++|.++
T Consensus 542 ~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~ 620 (688)
T 1tll_A 542 CRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKA 620 (688)
T ss_dssp ESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHH
T ss_pred eccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHH
Confidence 999976899999999999999888999999998754 89999999988 77888766 57899999999 6899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 682 LHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 682 L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
|.++++++|+++.++|++|+++|+.++||++|+|
T Consensus 621 L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 621 IQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 9999999999999999999999999999999998
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=1.4e-85 Score=733.47 Aligned_cols=429 Identities=41% Similarity=0.763 Sum_probs=382.0
Q ss_pred ccccceEEEEecCCCcc---cccc--ccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCC
Q 005072 279 AAISEYRVVFYDNADAS---VGEK--SWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 353 (715)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 353 (715)
..+++|+++.+++.+.. ..+. .....++..+|+.++|+.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 45688999988755422 1121 11334567789999999999999999997 578999999999999999999999
Q ss_pred eEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHh
Q 005072 354 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 432 (715)
Q Consensus 354 ~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~ 432 (715)
||+|||.|+++.|++++++||+++|+.++++...+. ...+.||| |||++++|++|+||+++|+|+||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864431 23456899 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcC--ccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEE
Q 005072 433 ASDPTEADRLRHLAS--PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 510 (715)
Q Consensus 433 ~~d~~e~~~L~~L~s--~~g~~~y~~~i~~~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~i 510 (715)
|+|+.||++|++|++ ++|+++|.+|+.+.+++++|||++||++++|+++|++. +|+++||+|||||+|..+++.++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 999999999999987 47899999999999999999999999999999999985 599999999999999877899999
Q ss_pred EEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh
Q 005072 511 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 590 (715)
Q Consensus 511 tv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~ 590 (715)
+|++|.+.+..|+.+.|+||+||+++.++++......++|+++.|.|++|.++.+|+||||+|||||||++|+|++..+.
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999888888999999999999999887642222258899999999999888899999999999999999999987654
Q ss_pred hcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCC
Q 005072 591 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 670 (715)
Q Consensus 591 ~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGp 670 (715)
..+...++++||||||++..|++|++||++|.+.+.+++++++|||++..|+||||+|.++.+.+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434579999999999745999999999999999888999999999888999999999999999998888999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 671 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 671 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
++.|+++|+++|.+|++++|+++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.3e-80 Score=707.67 Aligned_cols=407 Identities=34% Similarity=0.622 Sum_probs=355.2
Q ss_pred CCccccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCC--CcEEEE
Q 005072 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 383 (715)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~--d~~~~i 383 (715)
+..+|+..+|+.|+|+.+++|+.++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999985 567888
Q ss_pred ecCCCCCCCCCCCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 005072 384 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 462 (715)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~ 462 (715)
+..++... .+..++++|| |||++++|++|+||+++|+|.||+.||+||+|+.||++|.+|++++|+++|.+|+...+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 76443211 1245788999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEee--CCCCcccccccchhhhcc----
Q 005072 463 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK--TPTGRVHKGLCSTWMKNS---- 536 (715)
Q Consensus 463 ~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~--~~~gr~~~G~~S~~L~~l---- 536 (715)
++++|||.+||++++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+. +..++.+.|+||+||+++
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999975 59999999999999976689999999988764 344567889999999998
Q ss_pred -------CCCCC-CCCCceeeEEEecC-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC--CCCCCEEEEEee
Q 005072 537 -------LPMEK-SNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 605 (715)
Q Consensus 537 -------~~g~~-~~~~~~v~v~v~~~-~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~~Lf~G~ 605 (715)
.+|+. ...+..++|++|.| .|+||.++.+|+||||+||||||||||+|++....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 44430 01112688999864 99999888899999999999999999999987654332 234899999999
Q ss_pred ccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHH
Q 005072 606 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 678 (715)
Q Consensus 606 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V 678 (715)
|+++.|++|++||++|.+.+.+++++++|||++. .++||||+|.++...+|+++ .++++||||||+++|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9995599999999999999998899999999876 78999999999999999988 5689999999955999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 679 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 679 ~~~L~~i~~~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=5.5e-78 Score=663.11 Aligned_cols=382 Identities=34% Similarity=0.613 Sum_probs=339.7
Q ss_pred CCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCC
Q 005072 314 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 393 (715)
Q Consensus 314 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~ 393 (715)
.++.|+|+.|++|+.++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++|+.+.++....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 577899999999999999999999999997 58999999999999999999999999999999999887753221
Q ss_pred CCCCCCCCCC-cccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 005072 394 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 472 (715)
Q Consensus 394 ~~~~~~~~fp-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dvl~~f 472 (715)
.....|++ |||++++|++ +||+++|+|++|+.||+||+|+.+|++|++|++. ++|.+|+...+++++|||.+|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 11244677 9999999999 9999999999999999999999999999999873 479999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCc-ccccccchhhhccCCCCCCCCCceeeEE
Q 005072 473 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 473 ps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr-~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
|++++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+++..|+ .+.|+||+||+++.+|+ .++++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999975 6999999999999998778999999999877766654 46799999999987765 46766
Q ss_pred Ee--cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005072 552 VR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 629 (715)
Q Consensus 552 v~--~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~ 629 (715)
++ .|.|++|.++.+|+||||+|||||||++|+|++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 54 68999998888999999999999999999999876655554557899999999964599999999999988765 7
Q ss_pred EEEEEec-CCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 005072 630 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 708 (715)
Q Consensus 630 l~~a~Sr-~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~~~g 708 (715)
++++||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 556899999999999999999888899999999978899999999999999999999999999999999999
Q ss_pred CeEEeeC
Q 005072 709 RYLRDVW 715 (715)
Q Consensus 709 Ry~~DvW 715 (715)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=3e-76 Score=658.16 Aligned_cols=397 Identities=34% Similarity=0.635 Sum_probs=351.5
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCC-CCccCCCCeEEEccCCCHHHHHHHHHHcCC--CCCcEEEEec
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 385 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 385 (715)
.++.++|+.++|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||+ ++|+.+.++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999875 799999999999999999999999999976 7789998875
Q ss_pred CCCCCCCCC---CCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 005072 386 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 462 (715)
Q Consensus 386 ~~~~~~~~~---~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~ 462 (715)
.+++..+.+ ....+.+|||||++++|++|+||+++|+|.||+.||+||+|++||++|++|++ ++++|.+|+...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~ 181 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKN 181 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccC
Confidence 322111111 01235678899999999999999999999999999999999999999999986 7899999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CcccccccchhhhccCCCC
Q 005072 463 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPME 540 (715)
Q Consensus 463 ~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--gr~~~G~~S~~L~~l~~g~ 540 (715)
++++|+|.+||++++|++++++. +|++++|+|||||+|..+++.++|+|+++.+.++. |+.+.|.||+||+++.+|+
T Consensus 182 ~~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd 260 (435)
T 1f20_A 182 PTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD 260 (435)
T ss_dssp CCHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC
T ss_pred CCHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC
Confidence 99999999999999999999975 59999999999999986678999999988776654 4677899999999987765
Q ss_pred CCCCCceeeEEEe-cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCCEEEEEeeccCCcccccHHHH
Q 005072 541 KSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDEL 618 (715)
Q Consensus 541 ~~~~~~~v~v~v~-~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL 618 (715)
.++|+++ .|.|++|.++.+|+||||+|||||||+||++++..... .+...++++||||||+++.|++|++||
T Consensus 261 ------~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El 334 (435)
T 1f20_A 261 ------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 334 (435)
T ss_dssp ------EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHH
T ss_pred ------EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHH
Confidence 5888885 56999998888999999999999999999999987531 122347999999999997689999999
Q ss_pred HHHHHcCCCcEEEEEEecCCCC-ccccchhhhhc-hhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005072 619 NNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 695 (715)
Q Consensus 619 ~~~~~~~~~~~l~~a~Sr~~~~-k~yVq~~l~~~-~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 695 (715)
++|.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ .++++|||||| ++|+++|.++|.+++.++++++.+
T Consensus 335 ~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~ 413 (435)
T 1f20_A 335 LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEE 413 (435)
T ss_dssp HHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999888999999998654 89999999987 77788776 57899999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 005072 696 KAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 696 ~a~~~v~~l~~~gRy~~DvW 715 (715)
+|++|+++|+++|||++|||
T Consensus 414 ~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 414 DAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 99999999999999999999
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=2.7e-74 Score=630.52 Aligned_cols=367 Identities=31% Similarity=0.571 Sum_probs=336.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|+..+|+.|+|+.|++|+.++++|+|+||+||+++++++|+|||||+|+|+|+++.|++++++||+++|+.+.+.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
+ .|||++++|++|+||+ +|+|.+|+.||+||+|++ |.+|++ +++.|.+|+. +++++|+
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1799999999999999 899999999999999974 888874 7889999987 5899999
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCce
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 547 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~ 547 (715)
|.+||+ ++++|||+.+. +++++|+|||||+|..+++.++|+|+++.+.++ |+.+.|.||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 99999999864 778999999999998667999999998876665 67788999999998 77665 5
Q ss_pred eeEEEe-cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC
Q 005072 548 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 626 (715)
Q Consensus 548 v~v~v~-~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~ 626 (715)
++|+++ .+.|.+|.++.+|+||||+|||||||++|++++...+. .++++||||||+++.|++|++||+++.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 788885 56899998888999999999999999999999987652 2789999999998449999999999999998
Q ss_pred CcEEEEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeC-CchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005072 627 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 705 (715)
Q Consensus 627 ~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCG-pa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~v~~l~ 705 (715)
+++++++|||++..++|||++|.++.+.+++++.++++||||| | ++|+++|.++|.++++++++++.++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999999888998887899999999 6 8999999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 005072 706 MTGRYLRDVW 715 (715)
Q Consensus 706 ~~gRy~~DvW 715 (715)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
No 9
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=5.8e-37 Score=327.92 Aligned_cols=273 Identities=24% Similarity=0.448 Sum_probs=222.3
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|++.|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 3556778899999999999877778999999998764 89999999999876520 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
.|
T Consensus 86 ------------------------------------------------------------~g------------------ 87 (314)
T 1fnb_A 86 ------------------------------------------------------------NG------------------ 87 (314)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 545 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~ 545 (715)
.+..+|+|||+|+|.. .++.++|+|+.+.+.++.|+.+.|.||+||+++.+|+
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd----- 143 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA----- 143 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC-----
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC-----
Confidence 0136899999999863 3578999998766666666667899999999987765
Q ss_pred ceeeEEEecCCcc-cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC-CCCCEEEEEeeccCCcccccHHHHHHHHH
Q 005072 546 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA-ELGPSLLFFGCRNRKMDYIYEDELNNFVQ 623 (715)
Q Consensus 546 ~~v~v~v~~~~F~-Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~-~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 623 (715)
.+.|.+|.|+|. +|.+..+|+||||+|||||||++|++++......+. ..++++||||||+.+ |++|.+||+++.+
T Consensus 144 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 144 -EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 477888888764 565557899999999999999999999875432111 126799999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhccc-CCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005072 624 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 697 (715)
Q Consensus 624 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~-~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 697 (715)
.+. .+++++++||++. .++||+++|.+....+++.+. .++.||+||| ++|+++|.+.|.+++.+.| . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999743 478999999887777766553 6889999999 8999999999999998765 3 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005072 698 ESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 698 ~~~v~~l~~~gRy~~DvW 715 (715)
++++++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=1.4e-36 Score=323.23 Aligned_cols=274 Identities=25% Similarity=0.451 Sum_probs=221.3
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|+...|+.+.|+.++++++.+++++++|++|++++..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778899999999999888888999999999866789999999999887621 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
+ |
T Consensus 71 ~------------------------------------------------------------g------------------ 72 (304)
T 2bmw_A 71 N------------------------------------------------------------G------------------ 72 (304)
T ss_dssp T------------------------------------------------------------S------------------
T ss_pred c------------------------------------------------------------C------------------
Confidence 0 0
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCCC-CcccccccchhhhccCCCCCCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSND 544 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~-gr~~~G~~S~~L~~l~~g~~~~~ 544 (715)
.+.++|+|||+|+|.. +++.++|+|+.+.+.++. ++.+.|.||+||+++.+|+
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd---- 129 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS---- 129 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC----
Confidence 0136899999999853 357899999876554432 4456799999999987765
Q ss_pred CceeeEEEecCCc-ccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--C---CCCCCEEEEEeeccCCcccccHHHH
Q 005072 545 CSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDEL 618 (715)
Q Consensus 545 ~~~v~v~v~~~~F-~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~---~~~~~~~Lf~G~R~~~~D~ly~dEL 618 (715)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...... + ...++++||||||+.+ |++|.+||
T Consensus 130 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 130 --EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp --EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred --EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 47788888875 46655678999999999999999999998754311 0 0136899999999987 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCC
Q 005072 619 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 692 (715)
Q Consensus 619 ~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~ 692 (715)
+++.+.+. .+++++++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6689999999742 47899999998877777655 35789999999 8999999999999998764 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005072 693 DSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 693 ~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
. +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 3 6789999999999999999
No 11
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=2.1e-35 Score=326.20 Aligned_cols=274 Identities=25% Similarity=0.431 Sum_probs=222.8
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|+...|+.++|+.+++++...++++++||+|++++..+.|+||+||.|+++|.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3556778999999999999877888999999998765689999999999776410 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
.|
T Consensus 172 ------------------------------------------------------------~g------------------ 173 (402)
T 2b5o_A 172 ------------------------------------------------------------NG------------------ 173 (402)
T ss_dssp ------------------------------------------------------------TT------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCC-CCcccccccchhhhccCCC-CCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSN 543 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~-~gr~~~G~~S~~L~~l~~g-~~~~ 543 (715)
.+..+|+|||+|+|.. +++.++|+|+.+.+.++ .++.+.|.||+||+++.+| +
T Consensus 174 -------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d--- 231 (402)
T 2b5o_A 174 -------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD--- 231 (402)
T ss_dssp -------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC---
T ss_pred -------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc---
Confidence 0136899999999863 25789999987655442 3445689999999998877 5
Q ss_pred CCceeeEEEecCCc-ccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHH
Q 005072 544 DCSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF 621 (715)
Q Consensus 544 ~~~~v~v~v~~~~F-~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 621 (715)
.+.|..|.|.| .+|.+..+|+||||+|||||||++|++++...+... ...++++||||||+.+ |++|.+||+++
T Consensus 232 ---~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l 307 (402)
T 2b5o_A 232 ---DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKM 307 (402)
T ss_dssp ---CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHH
T ss_pred ---eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHH
Confidence 46788888876 566666789999999999999999999987643211 1136899999999997 99999999999
Q ss_pred HHcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005072 622 VQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 695 (715)
Q Consensus 622 ~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 695 (715)
.+.+. .+++++++||++. .++|||++|.+..+.+++++ ..++.||+||| ++|+++|.+.|.+++.+.+.
T Consensus 308 ~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~---- 382 (402)
T 2b5o_A 308 AAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL---- 382 (402)
T ss_dssp HHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----
T ss_pred HHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----
Confidence 98765 6789999999743 57899999998877887766 35789999999 89999999999999988764
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 005072 696 KAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 696 ~a~~~v~~l~~~gRy~~DvW 715 (715)
.+++++++|+++|||++|||
T Consensus 383 ~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 383 NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp CHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHCCCEEEecC
Confidence 47889999999999999999
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.7e-35 Score=316.17 Aligned_cols=226 Identities=26% Similarity=0.449 Sum_probs=188.7
Q ss_pred ChHHHHHHHcCCC-------cccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCce
Q 005072 478 PLGVFFAAIVPRL-------QPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 547 (715)
Q Consensus 478 p~~~~l~~~~p~l-------~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~ 547 (715)
.+|||+.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+.++.|+.+.|.||+||+++.+|+ .
T Consensus 67 ~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~ 140 (310)
T 3vo2_A 67 REGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------D 140 (310)
T ss_dssp CTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------E
T ss_pred cCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------E
Confidence 5688876654532 5899999999963 3578999998876667777778899999999987766 4
Q ss_pred eeEEEecCCcc-cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCCEEEEEeeccCCcccccHHHHHHHHHcC
Q 005072 548 APIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 625 (715)
Q Consensus 548 v~v~v~~~~F~-Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~ 625 (715)
+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++...+... ...++++||||||+.+ |++|.+||+++.+.+
T Consensus 141 v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~ 219 (310)
T 3vo2_A 141 VKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEMA 219 (310)
T ss_dssp EEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHC
T ss_pred EEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHhC
Confidence 77888888755 56566789999999999999999999987543211 1136899999999997 999999999999886
Q ss_pred C-CcEEEEEEecCCC----CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005072 626 A-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 699 (715)
Q Consensus 626 ~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~ 699 (715)
. .+++++++||++. .++|||+++.+..+.+++++ .+++.||+||| ++|+++|+++|.+++.+.+ + ++++
T Consensus 220 ~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~~ 294 (310)
T 3vo2_A 220 PDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWMQ 294 (310)
T ss_dssp TTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHHH
T ss_pred CCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHHH
Confidence 5 6789999999753 57899999999888888776 46899999999 8999999999999998875 3 5889
Q ss_pred HHHHHHHCCCeEEeeC
Q 005072 700 MVKNLQMTGRYLRDVW 715 (715)
Q Consensus 700 ~v~~l~~~gRy~~DvW 715 (715)
|+++|+++|||++|||
T Consensus 295 ~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 295 YKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCCceEEecC
Confidence 9999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=5.1e-34 Score=304.98 Aligned_cols=277 Identities=22% Similarity=0.340 Sum_probs=212.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCc---------eeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcE
Q 005072 310 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 380 (715)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~ 380 (715)
+....|+.++|+.+++|+...+++. +++|+|+.++..+.|+||++|.|+++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997666666 9999999876668999999999988763210
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHh
Q 005072 381 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 460 (715)
Q Consensus 381 ~~i~~~~~~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~ 460 (715)
+. | . .+
T Consensus 81 ---------g~------------~-----------------~---------------------~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A-----------------K---------------------GL--------------- 86 (314)
T ss_dssp ---------HH------------H-----------------T---------------------TC---------------
T ss_pred ---------cC------------c-----------------c---------------------ch---------------
Confidence 00 0 0 00
Q ss_pred cCCCHHHHHhhCCCCCCChHHHHHHHcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcc-cccccchhhhcc
Q 005072 461 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNS 536 (715)
Q Consensus 461 ~~~sl~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~gr~-~~G~~S~~L~~l 536 (715)
.+| | +.+|+|||+|+|.. +++.++|+|+.+.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~---------------~-~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV---------------G-YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC---------------B-CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc---------------C-CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 1 57899999999852 357899999876444444443 579999999998
Q ss_pred CCCCCCCCCceeeEEEecCCcc-cCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCccccc
Q 005072 537 LPMEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 614 (715)
Q Consensus 537 ~~g~~~~~~~~v~v~v~~~~F~-Lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 614 (715)
.+|+ .+.|.+|.|.|. +|. +..+|+||||+|||||||++|++++..... ....++++||||||+.+ |++|
T Consensus 142 ~~Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPGD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTTC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCS
T ss_pred CCcC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhH
Confidence 7765 477888888765 454 457899999999999999999999875431 11236899999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CccccchhhhhchhHHHhcc-cCCcEEEEe-CCchhhHHHHHHHHHHHHH
Q 005072 615 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQ 687 (715)
Q Consensus 615 ~dEL~~~~~~~~~~~l~~a~Sr~~~-----~k~yVq~~l~~~~~~i~~~i-~~~~~iYvC-Gpa~~M~~~V~~~L~~i~~ 687 (715)
.+||+++.+++..+++++++||++. .++|||+++.+..+.+++.+ ..++ +|+| || ++|+++|++.|.++..
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~-~yvCGGp-~~m~~~v~~~L~~~g~ 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGR-FYICGGP-KGMEKGVIEEIQKISG 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCE-EEEEESS-TTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCe-EEEeCCc-HHHHHHHHHHHHHHHh
Confidence 9999999876556789999999742 46899999988766666655 3344 4999 99 8999999999999865
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 688 EQGSLDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 688 ~~~~~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
.++ .++.|+++|+++|||++|||
T Consensus 292 --~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 --NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp --CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred --ccc---hHHHHHHHHHHCCCEEEecC
Confidence 233 46789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=4.5e-34 Score=305.03 Aligned_cols=228 Identities=27% Similarity=0.425 Sum_probs=182.7
Q ss_pred CCChHHHHHHHcCCC---------cccccccCCCCCC---CCCeEEEEEEEEEeeCCC----CcccccccchhhhccCCC
Q 005072 476 KPPLGVFFAAIVPRL---------QPRYYSISSSPRV---APSRIHVTCALVYEKTPT----GRVHKGLCSTWMKNSLPM 539 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l---------~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~----gr~~~G~~S~~L~~l~~g 539 (715)
...+|||+.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+..+. ++.+.|.+|+||+++.+|
T Consensus 60 ~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G 139 (311)
T 3lo8_A 60 PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 139 (311)
T ss_dssp CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT
T ss_pred cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc
Confidence 346788877665642 6899999999964 257899999865322221 123679999999998776
Q ss_pred CCCCCCceeeEEEecCCcccCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCC-CCCEEEEEeeccCCcccccHH
Q 005072 540 EKSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYED 616 (715)
Q Consensus 540 ~~~~~~~~v~v~v~~~~F~Lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~-~~~~~Lf~G~R~~~~D~ly~d 616 (715)
+ .+.|.+|.|.|.+.+ +..+|+||||+|||||||++|++++...+..+.. .++++||||||+.+ |++|.+
T Consensus 140 d------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~ 212 (311)
T 3lo8_A 140 D------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDE 212 (311)
T ss_dssp C------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHH
T ss_pred C------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHH
Confidence 5 477888888876543 3578999999999999999999998765421111 25799999999997 999999
Q ss_pred HHHHHHHcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCC
Q 005072 617 ELNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 691 (715)
Q Consensus 617 EL~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~ 691 (715)
||+++.+.+. .+++++++||++. .++||++.+.+..+.+++++..++.||+||| ++|+++|++.|.+++.+.+
T Consensus 213 el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g- 290 (311)
T 3lo8_A 213 EFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG- 290 (311)
T ss_dssp HHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc-
Confidence 9999998765 6789999999754 4789999999887777776667899999999 8999999999999998775
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 692 LDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 692 ~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
.++++|+++|+++|||++|||
T Consensus 291 ---~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 ---ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp ---CCHHHHHHHHHHTTCEEEEEC
T ss_pred ---HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
No 15
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=286.35 Aligned_cols=154 Identities=30% Similarity=0.459 Sum_probs=139.6
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
..+++|+|+|||||||||.+|++|++.+. .+ ..++++++++++.+ ++..++.+||++||||+|+||+||..
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34678999999999999999999999884 43 56789999999853 47789999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (715)
|+++|... ...+++++||||||||++|++||.+++.++++|+++||++++|+|+||+..+.+++|+.|.+++|++|+
T Consensus 109 F~~~L~~~---~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~ 185 (219)
T 3hr4_A 109 LKKSLFML---KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAAC 185 (219)
T ss_dssp HHHHHHHC---CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHH
Confidence 99999864 235899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhCCC
Q 005072 262 NLLRDD 267 (715)
Q Consensus 262 ~~~~~~ 267 (715)
+.++.+
T Consensus 186 ~~~~~~ 191 (219)
T 3hr4_A 186 ETFDVR 191 (219)
T ss_dssp HHTTCT
T ss_pred HHcCCC
Confidence 988643
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.98 E-value=1.2e-31 Score=287.00 Aligned_cols=291 Identities=23% Similarity=0.382 Sum_probs=206.8
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (715)
.|...+|+.++|+.+.+|+.++....++||+|+..+ .+.|.+|..++|.|+..+..=+ . +. + ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~GQ~~~i~~~~~~~~~~-----~----~~----~-~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-LFKYLEGHTCGIIPYYNELDNN-----P----NN----Q-INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-CCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-CcceecCcEeEEECCCcccccc-----c----cc----c-ccc
Confidence 467789999999999999988888899999999854 6999999999999987543200 0 00 0 000
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005072 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (715)
Q Consensus 389 ~~~~~~~~~~~~~fpp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~e~~~L~~L~s~~g~~~y~~~i~~~~~sl~dv 468 (715)
+|+ ++-+++ ++ .+ ..++
T Consensus 74 ~~~----------------------~~~~~~------------~~---------~h------------------~~~~-- 90 (316)
T 3jqq_A 74 DHN----------------------IINTTN------------HT---------NH------------------NNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----------------------cccccc------------cc---------cc------------------cccc--
Confidence 000 000000 00 00 0000
Q ss_pred HhhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeC---CCCcccccccchhhhccCCCCCCCCC
Q 005072 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT---PTGRVHKGLCSTWMKNSLPMEKSNDC 545 (715)
Q Consensus 469 l~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~---~~gr~~~G~~S~~L~~l~~g~~~~~~ 545 (715)
. ..+-+...+|+|||+|+|.. +.++|+|+++.+.+ ..++.+.|.||+||+++.+|+
T Consensus 91 -------~-------~~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 149 (316)
T 3jqq_A 91 -------L-------SHIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND----- 149 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC-----
T ss_pred -------c-------ccCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC-----
Confidence 0 01124568999999999963 68999998753322 123557899999999888876
Q ss_pred ceeeEEEecCCcccCCC---CCCCeEEEecCCcchhHHHHHHHHHHhhhc------CCCCCCEEEEEeeccCCcccccHH
Q 005072 546 SWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYED 616 (715)
Q Consensus 546 ~~v~v~v~~~~F~Lp~~---~~~piImIa~GTGIAPfrs~lq~~~~~~~~------~~~~~~~~Lf~G~R~~~~D~ly~d 616 (715)
.+.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||||+.+ |++|.+
T Consensus 150 -~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 150 -DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp -EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred -EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 4778888999999876 378999999999999999999998765321 11237899999999997 999999
Q ss_pred HHHHHHHcCC-CcEEEEEEecCCC---CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHHHHHhCC
Q 005072 617 ELNNFVQSGA-LSQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 691 (715)
Q Consensus 617 EL~~~~~~~~-~~~l~~a~Sr~~~---~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~ 691 (715)
||+++.+... .+++++++||++. .++|||+.+.+....+++++ ..++.||+||| ++|+++|.+.|.+. |.
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~----G~ 302 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH----DQ 302 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc----CC
Confidence 9999998754 5689999999753 67999999999887887776 46899999999 89999998877644 33
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 005072 692 LDSSKAESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 692 ~~~~~a~~~v~~l~~~gRy~~DvW 715 (715)
++. ...+|++.|+|
T Consensus 303 ~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 303 FDE----------KKKKRVHVEVY 316 (316)
T ss_dssp -CH----------HHHTTEEEEEC
T ss_pred Ccc----------cccccEEEEeC
Confidence 332 34578888875
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=1e-27 Score=237.85 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.5
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
..+++++|+|+|+|||||++|+.|++.+...+ ..++++|++++. .++..++.+||++||| +|++|+|+..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34688999999999999999999999998765 457888888752 2477899999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (715)
|+++|.... ...|++++|+|||+||++| ++||.+++.++++|+++||+++.+.+++|++.+.+++|++|.+.||+.|
T Consensus 89 fl~~L~~~~--~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l 166 (191)
T 1bvy_F 89 FVDWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 166 (191)
T ss_dssp HHHHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHh
Confidence 999998532 2358999999999999999 6999999999999999999999999999986677778999999999999
Q ss_pred H
Q 005072 261 D 261 (715)
Q Consensus 261 ~ 261 (715)
.
T Consensus 167 ~ 167 (191)
T 1bvy_F 167 A 167 (191)
T ss_dssp H
T ss_pred c
Confidence 6
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.93 E-value=7e-26 Score=220.03 Aligned_cols=150 Identities=29% Similarity=0.418 Sum_probs=129.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
.+++++|+|+|+||||+.+|+.|++.+...+ ..++++++++++. .++.+++.+||++||||.|++|+++..|
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~f 79 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVAL 79 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHHH
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHHH
Confidence 4678999999999999999999999998765 4567889988764 3477899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (715)
+++|... ....+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+| ...++++++|.+++++.|..
T Consensus 80 ~~~l~~~--~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 80 HKFLFSK--KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp HHHHTST--TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhc--cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHHh
Confidence 9999752 1235899999999999999999999999999999999999999998887 45689999999999999876
Q ss_pred hh
Q 005072 263 LL 264 (715)
Q Consensus 263 ~~ 264 (715)
.+
T Consensus 156 ~~ 157 (167)
T 1ykg_A 156 RA 157 (167)
T ss_dssp CC
T ss_pred hc
Confidence 54
No 19
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.92 E-value=5.6e-25 Score=227.07 Aligned_cols=184 Identities=17% Similarity=0.267 Sum_probs=147.3
Q ss_pred CCChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.|..|
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~---------~~~G~~s~~l~~~l~~Gd------~v~v~gP 106 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRV---------LPEGRFSDYLRNDARVGQ------VLSVKGP 106 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECC---------CTTSSSHHHHHHHSSSSS------EEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEE---------CCCCCchHHHHhcCCCCC------EEEEEcC
Confidence 34678988766565 57899999999863 5789988753 24599999996 777765 5778888
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+..+++||||+|||||||++|++++...+. ..+++||||+|+.+ |++|.+||+++.+....++++++
T Consensus 107 ~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (250)
T 1tvc_A 107 LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKAC 181 (250)
T ss_dssp ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEEC
T ss_pred ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 99999887656899999999999999999999887532 26899999999998 99999999999876666789989
Q ss_pred EecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+||++. .++||++.+.+. +.+. ..+..+|+||| ++|+++|.+.|.+.
T Consensus 182 ~s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~ 232 (250)
T 1tvc_A 182 VWHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSR 232 (250)
T ss_dssp CSSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred eccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 998532 467898877643 2221 25779999999 89999999988754
No 20
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.92 E-value=6.4e-26 Score=215.39 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=125.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+ . .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 468999999999999999999999998765 4456666532 1 24678899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (715)
++|.... ..+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~~---~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQK---PDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHC---CCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhc---cccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 9998631 24889999999999999999999999999999999999999999988743 56889999999998876
No 21
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.91 E-value=1.1e-24 Score=229.61 Aligned_cols=181 Identities=18% Similarity=0.343 Sum_probs=138.7
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEee--CC-C---CcccccccchhhhccCCCCCCCCCceeeEEEecCCcccCCCC
Q 005072 490 LQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADA 563 (715)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~--~~-~---gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~~~~F~Lp~~~ 563 (715)
..+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||+++.+|+ .+.|..|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-C
Confidence 46899999999863 57899888753110 00 0 1235799999999987765 477888899999864 5
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC----
Q 005072 564 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP---- 639 (715)
Q Consensus 564 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~---- 639 (715)
.+|+||||+|||||||++|+++++.... ..++++||||||+.+ |++|.+||+++.+.+..+++++++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 6899999999999999999998876432 236899999999997 99999999999887777899999998642
Q ss_pred --CccccchhhhhchhHHHhcc-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 640 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 640 --~k~yVq~~l~~~~~~i~~~i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.++||++.+.+.. +.+.. ..++.+|+||| ++|+++|++.|.+.
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887664321 11111 24678999999 89999999988754
No 22
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.91 E-value=1.3e-24 Score=221.56 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=141.7
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchh-hhccCCCCCCCCCceeeEEEec
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQ 554 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~-L~~l~~g~~~~~~~~v~v~v~~ 554 (715)
...+|||+.+.+|...+|+|||+|+|. .++.++|+|+.+ ..|.+|+| +.++.+|+ .+.|..|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~-~~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTT-STTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCC-CCCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCc
Confidence 456899987766777899999999986 346899988653 23666665 66676665 57788889
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005072 555 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 634 (715)
Q Consensus 555 ~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 634 (715)
|.|.++.+..++++|||+|||||||++|++++...+. .++++|+||+|+.+ |++|.+||++++++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 9999886667899999999999999999999987532 26899999999997 999999999998876677899999
Q ss_pred ecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHH-HH
Q 005072 635 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HT 684 (715)
Q Consensus 635 Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L-~~ 684 (715)
|+++. .++||++.+.+. +.+ ..+..+|+||| ++|+++|++.| .+
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~---~~~--~~~~~vyvCGp-~~m~~~v~~~l~~~ 216 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD---HGT--LAEHDIYIAGR-FEMAKIARDLFCSE 216 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH---CSC--CTTCEEEEESC-HHHHHHHHHHHHHH
T ss_pred cCCCCCcCCceeeHHHHHHHh---cCC--ccccEEEEECC-HHHHHHHHHHHHHH
Confidence 98643 357887766543 111 25689999999 89999999887 44
No 23
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.91 E-value=1.4e-24 Score=222.96 Aligned_cols=186 Identities=17% Similarity=0.255 Sum_probs=144.0
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
...+|||+.+.+| ....|+|||+|.|. ..+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..
T Consensus 41 ~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~g 104 (243)
T 2eix_A 41 GLPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKVY---------EKGQMSQYIDHLNPGD------FLQVRG 104 (243)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECC---------TTCHHHHHHHTCCTTC------EEEEEE
T ss_pred CcCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEEc---------CCCCcchHhhcCCCCC------EEEEEC
Confidence 3467898865544 23579999999986 357899888632 4699999999887766 477888
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|+|.++.+..++++|||+|||||||++|++++..... ...+++|+||+|+.+ |++|.+||+++++....+++++
T Consensus 105 P~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 180 (243)
T 2eix_A 105 PKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYY 180 (243)
T ss_dssp EECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEE
T ss_pred CeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 899999987667899999999999999999999875321 236899999999997 9999999999988766778999
Q ss_pred EEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 633 AFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 633 a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++|++.. .++||++.+.+. +......+..+|+||| ++|+++|++.|.+.
T Consensus 181 ~~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 181 VLNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EEEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred EeCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 9998532 357887643221 1111124678999999 89999999988754
No 24
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.91 E-value=2e-24 Score=222.45 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.8
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE-
Q 005072 476 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 551 (715)
...+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTTC------EEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCcC------EEEEec
Confidence 45689998766562 46799999999863 6788877532 4589999999887766 46777
Q ss_pred EecCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcC-CCcE
Q 005072 552 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 629 (715)
Q Consensus 552 v~~~~F~Lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~ 629 (715)
.+.|.|.++.+. .++++|||+|||||||++|++++...+ ..++++|+||+|+.+ |++|.+||++++++. ..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 778889987653 689999999999999999999875432 126899999999997 999999999998754 3568
Q ss_pred EEEEEecCCC---Cccccchhhhhch-hHHHhc-c-cCCcEEEEeCCchhhHHHHHHHH-HHH
Q 005072 630 LIVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTI 685 (715)
Q Consensus 630 l~~a~Sr~~~---~k~yVq~~l~~~~-~~i~~~-i-~~~~~iYvCGpa~~M~~~V~~~L-~~i 685 (715)
++.++|+++. .+++|++.+.+.. ...... . ..+..+|+||| ++|+++|++.| .+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHc
Confidence 8889998754 3688988776542 222211 2 35789999999 89999999988 654
No 25
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.90 E-value=1.6e-24 Score=226.82 Aligned_cols=194 Identities=16% Similarity=0.216 Sum_probs=143.6
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
..+|||+.+.+| ...+|+|||+|+|. .++.++|+|+.+...+..+....|.+|+||+++.+|+ .+.|..|
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP 119 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGP 119 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcC
Confidence 467888865433 24689999999986 4578999987653333223335699999999887766 4678888
Q ss_pred cCCccc--------CCC--------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHH
Q 005072 554 QSNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 617 (715)
Q Consensus 554 ~~~F~L--------p~~--------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dE 617 (715)
.|.|.+ +.+ ..+|+||||+|||||||++|++++..... ..++++||||+|+.+ |++|.+|
T Consensus 120 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-d~~~~~e 195 (275)
T 1umk_A 120 SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD---DHTVCHLLFANQTEK-DILLRPE 195 (275)
T ss_dssp ECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEESSGG-GCTTHHH
T ss_pred ccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHH
Confidence 887743 322 35789999999999999999999875321 236899999999987 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHH-HHHHHHHHH
Q 005072 618 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 685 (715)
Q Consensus 618 L~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~-~V~~~L~~i 685 (715)
|+++.+... .++++.++|+++. .++||++.+.+. .......++.+|+||| ++|++ ++++.|.+.
T Consensus 196 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 196 LEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp HHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred HHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 999987654 4688889998643 357787654321 1111125689999999 89999 898888764
No 26
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.90 E-value=5.6e-24 Score=218.27 Aligned_cols=183 Identities=16% Similarity=0.286 Sum_probs=141.9
Q ss_pred CCChHHHHHHHcCCC-----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceee
Q 005072 476 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 549 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~ 549 (715)
...+|||+.+.+|.. ++|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||+ ++.+|+ .+.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEE
Confidence 456899987666532 469999999985 36788877532 112335699999997 577765 577
Q ss_pred EEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005072 550 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 629 (715)
Q Consensus 550 v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~ 629 (715)
|..|.|.|.++ +..+|+||||+|||||||++|++++...+. .+++|+||+|+.+ |++|.+||+++.+.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 88899999988 567899999999999999999999887542 2399999999997 999999999998877 668
Q ss_pred EEEEEecCCCC---ccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHHH
Q 005072 630 LIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 686 (715)
Q Consensus 630 l~~a~Sr~~~~---k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i~ 686 (715)
+++++|++... +++++..+. .+-..+..||+||| ++|+++|++.|.+..
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~g 224 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLALG 224 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHHT
T ss_pred EEEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999886542 455554433 11136789999999 899999999987653
No 27
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.90 E-value=8.4e-24 Score=228.08 Aligned_cols=181 Identities=23% Similarity=0.283 Sum_probs=146.3
Q ss_pred CCChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v~v~v~ 553 (715)
.+.+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.|..|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRN---------VPQGKMSEYLSVQAKAGD------KMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEEC---------CTTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEE---------cCCCCchhhHhhccCCCC------EEEEECC
Confidence 34689998766676 5789999999986 5789988863 24589999996 676665 5778889
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|+|.++.+ .+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++++....++++++
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcCC----CCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 4899999999999999999999887542 26899999999997 99999999999887777789999
Q ss_pred EecCCC---CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 634 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 634 ~Sr~~~---~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+|+++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~ 323 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQ 323 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred EecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 998654 367888877632 111 24678999999 89999999988754
No 28
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.90 E-value=1.1e-23 Score=231.91 Aligned_cols=180 Identities=14% Similarity=0.239 Sum_probs=141.0
Q ss_pred CChHHHHHHHcCC-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeE
Q 005072 477 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 550 (715)
Q Consensus 477 ~p~~~~l~~~~p~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v 550 (715)
..+|||+.+.+|. ..+|+|||+|+|. ++.++|+|+.+ ..|.+|+||++ +.+|+ .+.+
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 4678888765552 3589999999986 47899887632 35999999997 76665 5788
Q ss_pred EEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005072 551 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 630 (715)
Q Consensus 551 ~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l 630 (715)
..|.|.|.++.+..+|+||||+|||||||++|++++...+. .++++|+||+|+.+ |++|++||+++++.+..+++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 88999999976667899999999999999999999887532 26899999999998 99999999999988777789
Q ss_pred EEEEecCCCC---------ccccchhhhhchhHHHhc-ccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 631 IVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 631 ~~a~Sr~~~~---------k~yVq~~l~~~~~~i~~~-i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++++|+++.. +++++..+ +.+. ...++.+|+||| ++|+++|++.|.+.
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDL 378 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHHT
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 9999986531 23443321 1111 113789999999 89999999988653
No 29
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.90 E-value=1.1e-24 Score=227.73 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=150.7
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE-
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 551 (715)
...+|||+.+.+| ....|+|||+|+|. .+.++++++. ...|.+|+||+++.+|+ .+.+.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIK---------VQNGPLTSRLQHLKVGD------PVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEE---------ECCCchhhHHhcCCCCC------EEEEec
Confidence 4568999876555 23579999999985 3678877653 24699999999888776 47788
Q ss_pred EecCCcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCC----
Q 005072 552 VRQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA---- 626 (715)
Q Consensus 552 v~~~~F~Lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~---- 626 (715)
.|.|.|.++. ...++++|||+|||||||++|++++...+.. ++++|+||+|+.+ |++|.+||+++.++..
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 8889998875 3578999999999999999999998765432 6899999999997 9999999999876654
Q ss_pred ----CcEEEEEEecCCC-CccccchhhhhchhHHHh-----cccCCcEEEEeCCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005072 627 ----LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 696 (715)
Q Consensus 627 ----~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~i~~-----~i~~~~~iYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 696 (715)
.++++.++|+++. .++++++.+.+.. .+.. ...+++.+|+||| ++|+++|++.|.+.......
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~----- 256 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGK----- 256 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCB-----
T ss_pred cccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhh-----
Confidence 3578888888753 5688888765521 1111 1235789999999 89999999999766444332
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 005072 697 AESMVKNLQMTGRYLRDVW 715 (715)
Q Consensus 697 a~~~v~~l~~~gRy~~DvW 715 (715)
+...|+|..|.|
T Consensus 257 -------i~~~~~~~~E~y 268 (271)
T 4fk8_A 257 -------NSAPGHYVIERA 268 (271)
T ss_dssp -------TTBCBSEEEEES
T ss_pred -------cCCCCcEEEEEe
Confidence 233677877765
No 30
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.89 E-value=1.2e-23 Score=199.67 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=123.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhc-CCCeEEEEecCCCC--CCCChhHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~~if~~sTyG~--G~~pdna~ 180 (715)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+++++.+ ++. +++.+||++||||+ |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998765 56889999988753 467 89999999999999 99999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHH
Q 005072 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWP 258 (715)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~ 258 (715)
.|+++|... .+++++|+|||+||+.|.+||.+++.+++.|+++|++++.+....+. +. ..+.+.+|.++|+.
T Consensus 73 ~fl~~l~~~-----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFDRI-----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGGGT-----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHh
Confidence 999999753 48999999999999999999999999999999999999988666554 33 67788899888765
Q ss_pred H
Q 005072 259 E 259 (715)
Q Consensus 259 ~ 259 (715)
.
T Consensus 147 ~ 147 (148)
T 3f6r_A 147 Q 147 (148)
T ss_dssp T
T ss_pred h
Confidence 3
No 31
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.89 E-value=3.7e-23 Score=228.19 Aligned_cols=183 Identities=14% Similarity=0.268 Sum_probs=142.7
Q ss_pred CChHHHHHHHc--C--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhh-ccCCCCCCCCCcee
Q 005072 477 PPLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA 548 (715)
Q Consensus 477 ~p~~~~l~~~~--p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~-~l~~g~~~~~~~~v 548 (715)
..+|||+.+.+ | . ..+|+|||+|+|. ++.++|+|+... ..+..+.|.+|+||+ ++.+|+ .+
T Consensus 184 ~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~v 252 (399)
T 4g1v_A 184 ITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------EI 252 (399)
T ss_dssp CCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------EE
T ss_pred CCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------EE
Confidence 35788876543 3 2 3579999999986 467888776321 111235799999997 676665 57
Q ss_pred eEEEecCCcccCCC----CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHc
Q 005072 549 PIFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 624 (715)
Q Consensus 549 ~v~v~~~~F~Lp~~----~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 624 (715)
.+..|.|.|.++.+ ..+|+||||+|||||||++|++++...+. .++++|+||+|+.+ |++|.+||+++++.
T Consensus 253 ~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~ 327 (399)
T 4g1v_A 253 KLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAE 327 (399)
T ss_dssp EEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTT
T ss_pred EEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHh
Confidence 88889999999876 57899999999999999999999987642 26899999999987 99999999999988
Q ss_pred CCCcEEEEEEecCCCCccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 625 GALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 625 ~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
...+++++++|+++ ++++.. .+.+.+..++.+|+||| ++|+++|++.|.+.
T Consensus 328 ~~~~~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 328 CANVDKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp CSSEEEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 77788999999854 455432 22233445889999999 89999999988654
No 32
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.89 E-value=1.3e-23 Score=219.88 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=143.4
Q ss_pred CCChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.+.
T Consensus 43 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~ 105 (272)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIKV---------PDGPLTSRLQHIKVGE------QIILR 105 (272)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEE
T ss_pred ccCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEEc---------cCCCchhHHHhCCCCC------EEEEe
Confidence 34679998766552 3679999999986 37888877532 4599999999887766 46777
Q ss_pred -EecCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHH-HHHH-----
Q 005072 552 -VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ----- 623 (715)
Q Consensus 552 -v~~~~F~Lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~----- 623 (715)
.+.|.|.++... .++++|||+|||||||++|++++...+ ...+++|+||+|+.+ |++|.+||+ ++++
T Consensus 106 ~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~ 180 (272)
T 2bgi_A 106 PKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIG 180 (272)
T ss_dssp EEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTT
T ss_pred eCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhh
Confidence 688999887543 689999999999999999999875432 126899999999997 999999999 9887
Q ss_pred c--CCCcEEEEEEecCCC-Cccccchhhhhch-hHHHhc--c-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 624 S--GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 624 ~--~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~-~~i~~~--i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
+ ...++++.++||+.. .++||++.+.+.. .....+ + ..++.+|+||| ++|+++|.+.|.+.
T Consensus 181 ~~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 248 (272)
T 2bgi_A 181 ELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESY 248 (272)
T ss_dssp TTSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTT
T ss_pred cccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3 245688889998743 4789988876532 111111 1 25789999999 89999999988653
No 33
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.89 E-value=1.3e-23 Score=219.03 Aligned_cols=194 Identities=14% Similarity=0.230 Sum_probs=139.9
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcc-cccccchhhhccCCCCCCCCCceeeEE
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~-~~G~~S~~L~~l~~g~~~~~~~~v~v~ 551 (715)
...+|||+.+.+| ...+|+|||+|+|. .++.++|+|+++.. +..++. ..|.+|+||+++.+|+ .+.|.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCcc-CCCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEE
Confidence 3568898765433 24679999999986 35789998875421 111111 3599999999887766 46788
Q ss_pred EecCC--------cccCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHH
Q 005072 552 VRQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 621 (715)
Q Consensus 552 v~~~~--------F~Lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 621 (715)
.|.|. |.++. +..+|+||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 88775 67764 246899999999999999999999876421 1236899999999998 99999999999
Q ss_pred HHcCC-CcEEEEEEecC---CC----CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHH-HHHHHHH
Q 005072 622 VQSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 684 (715)
Q Consensus 622 ~~~~~-~~~l~~a~Sr~---~~----~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~-V~~~L~~ 684 (715)
++... .++++.++|++ +. .++||++.+.+. .......++.+|+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87654 45788888873 11 367888764322 1111124578999999 899997 4677753
No 34
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.89 E-value=2.4e-23 Score=216.65 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=134.2
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEEe
Q 005072 477 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 477 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v~ 553 (715)
..+|||+.+.+|. ..+|+|||+|+|. ..+.++|+|+.+ ..|.+|+||+++.+|+ .+.+..|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecC-CCCEEEEEEEEe---------cCCchHHHHhcCCCCC------EEEEEcc
Confidence 4678888765564 6789999999986 357899887632 3588999999888776 4778888
Q ss_pred cCC-cccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005072 554 QSN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 631 (715)
Q Consensus 554 ~~~-F~Lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 631 (715)
.|+ |.++.+ ..+|++|||+|||||||++|++++...+ .+++||||+|+++ |++|.+||++++.. +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 887 998865 4689999999999999999999987643 5799999999998 99999999986532 444
Q ss_pred EEEecCCC--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 632 VAFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 632 ~a~Sr~~~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
++ ++++. .++||++.+.+. +.++..+|+||| ++|+++|++ |.+
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred EE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 44 44432 467888765442 334689999999 899999988 754
No 35
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.89 E-value=1.1e-23 Score=218.15 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=141.4
Q ss_pred CCChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEE-
Q 005072 476 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 551 (715)
Q Consensus 476 ~~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 551 (715)
...+|||+.+.+| ...+|+|||+|+|. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKV---------PDGPLTSRLQHLKEGD------ELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEEe---------CCCcchhHHHhCCCCC------EEEEec
Confidence 3467999876555 23679999999986 36888877532 4699999999887766 46676
Q ss_pred EecCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHH-HHHH-----c
Q 005072 552 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 624 (715)
Q Consensus 552 v~~~~F~Lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~ 624 (715)
.+.|.|.++... .+++||||+|||||||++|++++...+.. .+++|+||+|+.+ |++|.+||+ ++++ +
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC----CeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 567889887543 68999999999999999999988765422 6899999999997 999999999 8765 1
Q ss_pred --CCCcEEEEEEecCCC-Cccccchhhhhch-hHHHhc--c-cCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 625 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 625 --~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~-~~i~~~--i-~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
...+++++++|++.. .+++|++.+.+.. .....+ + ..++.+|+||| ++|+++|.+.|.+.
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 234 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSF 234 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 134578889998743 4788988776532 111111 1 25789999999 89999999988653
No 36
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.89 E-value=3.7e-23 Score=228.36 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=140.7
Q ss_pred CChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhc-cCCCCCCCCCceeeE
Q 005072 477 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 550 (715)
Q Consensus 477 ~p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~-l~~g~~~~~~~~v~v 550 (715)
..+|||+.+.+| . ..+|+|||+|+|. ++.++|+|+.+ +.++.+.|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEE
Confidence 457888865544 2 3579999999986 47899888643 1112346999999995 77765 4677
Q ss_pred EEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005072 551 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 630 (715)
Q Consensus 551 ~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l 630 (715)
..|.|.|.++.+..+|+||||+|||||||++|++++.. + ..++++||||+|+.+ |++|++||+++++....+++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 78889999976667899999999999999999999865 2 126899999999998 99999999999987777789
Q ss_pred EEEEecCCCCc----cccch-hhhhchhHHHh--cccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 631 IVAFSREGPTK----EYVQH-KMMEKSSDIWN--MLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 631 ~~a~Sr~~~~k----~yVq~-~l~~~~~~i~~--~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
++++|+++... .|.++ ++... .+.+ .+ .++.+|+||| ++|+++|++.|.+.
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~-~~~~vyvCGp-~~m~~~v~~~L~~~ 384 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILL-PDADYYICGP-IPFMRMQHDALKNL 384 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCC-TTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEECCCCcccccccccCcCCCcCHH--HHhhccCC-CCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 99999865421 12222 22211 1222 22 3789999999 89999999988654
No 37
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.86 E-value=4.3e-22 Score=213.40 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=134.1
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccc-cchhhh-ccCCCCCCCCCceeeEEEe
Q 005072 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVR 553 (715)
Q Consensus 476 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~-~S~~L~-~l~~g~~~~~~~~v~v~v~ 553 (715)
...+|||+.+.+|...+|+|||+|+|. ..+.++|+|+. ...|. +|+||+ ++.+|+ .+.|..|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~-~~~~l~i~Vk~---------~~~G~g~S~~L~~~l~~Gd------~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQ-ERNRYVIAVKR---------DSNGRGGSISFIDDTSEGD------AVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTT-CCSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC------EEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCC-CCCeEEEEEEE---------ecCCcchhHHHHhcCCCCC------EEEEeCC
Confidence 346899987666666889999999986 34788888763 24587 899999 777765 4677778
Q ss_pred cCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005072 554 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 633 (715)
Q Consensus 554 ~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 633 (715)
.|.|.++.+ .++++|||+|||||||++|++++...+ . .+++|+||+|+.+ |++|.+||+++. .+. ++.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEE
Confidence 899999865 678999999999999999999987643 1 5799999999997 999999999875 222 35556
Q ss_pred EecCCC-CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHH
Q 005072 634 FSREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 684 (715)
Q Consensus 634 ~Sr~~~-~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~ 684 (715)
++++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 666432 23444443322 235789999999 8999999999876
No 38
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.85 E-value=2e-21 Score=183.89 Aligned_cols=141 Identities=25% Similarity=0.285 Sum_probs=121.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcC-CCeEEEEecCCCCCC--CChhHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~~if~~sTyG~G~--~pdna~~ 181 (715)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++++++++. .++.+ ++.+||++||||.|. +|+++..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEA------GGLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCS------TTTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCH------HHhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 57999999999999999999999998765 5678889988764 34777 999999999999999 9999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCC-chhhHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 258 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~-~e~~f~~W~~~l~~ 258 (715)
|+++|... .+++++++|||+||+.|.+||.+.+.+++.|..+|++.+.+....|.... .++.+.+|.+++++
T Consensus 73 fl~~l~~~-----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGGGS-----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 99999752 48899999999999999889999999999999999999887665554322 56789999988764
No 39
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.84 E-value=1.3e-21 Score=192.40 Aligned_cols=147 Identities=23% Similarity=0.401 Sum_probs=122.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC-------
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p------- 176 (715)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++++||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 46899999999999999999999988643 3456778877653 4577899999999999999999
Q ss_pred -hhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-----------------
Q 005072 177 -DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------- 236 (715)
Q Consensus 177 -dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~----------------- 236 (715)
+++..|+++|... .++|++++|||+|++. | ++||.+.+.+++.|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 9999999988642 5889999999999998 8 5899999999999999999988763
Q ss_pred --cccCC-C-C--CchhhHHHHHHHHHHHHHhhh
Q 005072 237 --GLGDD-D-Q--CIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 237 --g~gD~-~-~--~~e~~f~~W~~~l~~~L~~~~ 264 (715)
|++.+ + + ..+++++.|.++||++|...+
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~~ 180 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLVL 180 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhccc
Confidence 55422 2 2 258899999999999887543
No 40
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.84 E-value=3.2e-21 Score=189.23 Aligned_cols=143 Identities=22% Similarity=0.380 Sum_probs=119.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC--------
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-------- 176 (715)
++++|+|+|+||||+.+|+.|++.+.. . ..++++++++.+. .++..++.+||++||||+|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 479999999999999999999998864 2 3456778877653 4577899999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005072 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 236 (715)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~------------------ 236 (715)
+++..|+++|... .++|++|+|||+||+. | ++||.+.+.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~~~-----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGL-----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTC-----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 9999999999742 4889999999999998 8 5799999999999999999988663
Q ss_pred -cc-cCCC---CCchhhHHHHHHHHHHHHH
Q 005072 237 -GL-GDDD---QCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 237 -g~-gD~~---~~~e~~f~~W~~~l~~~L~ 261 (715)
|+ .|.+ ...++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 43 2322 2468899999999987664
No 41
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.83 E-value=1.7e-20 Score=182.91 Aligned_cols=140 Identities=27% Similarity=0.429 Sum_probs=116.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCc-ccchhHHHHhhcCCCeEEEEecCCCCCCC----ChhHH
Q 005072 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (715)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~----pdna~ 180 (715)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 489999999999999999999999764 3567788776 43 357789999999999999999 99999
Q ss_pred HHH-HHHHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-------------------cc
Q 005072 181 RFY-KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL 238 (715)
Q Consensus 181 ~F~-~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~ 238 (715)
.|+ ++|... .+++++|+|||+||+. | ++||.+++.+++.|.++|++.+.+. |+
T Consensus 71 ~fl~~~l~~~-----~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEV-----DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGC-----CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhcccc-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 887642 5889999999999999 8 6999999999999999999988652 22
Q ss_pred --cCC--CCCchhhHHHHHHHHHHHH
Q 005072 239 --GDD--DQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 239 --gD~--~~~~e~~f~~W~~~l~~~L 260 (715)
+.+ +...+++++.|.+++.+.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246888999999998776
No 42
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.83 E-value=1.1e-20 Score=184.58 Aligned_cols=143 Identities=26% Similarity=0.392 Sum_probs=119.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+++|+|+|+||||+.+|+.|++.+... .+++++++++.. .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999753 367888877653 457789999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cC-
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD- 240 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~--------------------g~-gD- 240 (715)
+|... .++|++++|||+||+. | ++||.+.+.+++.|.+.|++.+... |+ .|
T Consensus 71 ~l~~~-----~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEI-----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 99743 4889999999999986 8 7999999999999999999987642 11 12
Q ss_pred CCC--CchhhHHHHHHHHHHHHHh
Q 005072 241 DDQ--CIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 241 ~~~--~~e~~f~~W~~~l~~~L~~ 262 (715)
+++ ..++++..|.++|++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 122 2577899999999998864
No 43
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.82 E-value=6.3e-21 Score=184.26 Aligned_cols=137 Identities=26% Similarity=0.364 Sum_probs=112.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
|++++|+|+|+||||+.+|+.|++.+ + . ++++++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999998 2 3 68889987763 45778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------cccCC-
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD- 241 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~gD~- 241 (715)
++|... .|++++|+|||+||+. |. +||.+++.++++|.+ ++.+.+. ++..+
T Consensus 69 ~~l~~~-----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTH-----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhh-----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 988643 4789999999999996 97 699999999999998 7776653 33222
Q ss_pred C---CCchhhHHHHHHHHHHH
Q 005072 242 D---QCIEDDFSAWRELVWPE 259 (715)
Q Consensus 242 ~---~~~e~~f~~W~~~l~~~ 259 (715)
+ ...++++++|.+++++.
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTT
T ss_pred CCccccCHHHHHHHHHHHHHh
Confidence 1 13578899999988654
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.81 E-value=6.5e-20 Score=177.71 Aligned_cols=142 Identities=22% Similarity=0.386 Sum_probs=120.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+++|+|+|+||||+.+|+.|++.+... .++++++++++. +++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 6899999999999999999999999753 468899988764 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------c--ccCC
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------G--LGDD 241 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g--~gD~ 241 (715)
+|... .++++++++||+|++. |. +||.+.+.+++.|.++|++.+.+. | .+.+
T Consensus 72 ~l~~~-----~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhc-----CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 98753 4899999999999984 86 899999999999999999987651 2 2222
Q ss_pred --CCCchhhHHHHHHHHHHHHH
Q 005072 242 --DQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L~ 261 (715)
+...+++++.|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 23467889999999988773
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.80 E-value=8.7e-20 Score=176.84 Aligned_cols=142 Identities=22% Similarity=0.383 Sum_probs=119.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
++++|+|+|+||||+.+|+.|++.+... ..++++|+.+++. .++.+++.+||++|||+.|++|+++..|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 3468889988764 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-cCC-
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDD- 241 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~-gD~- 241 (715)
+|... .++|+++++||+|++. |. +||.+.+.+++.|.++|++.+... |+ .|.
T Consensus 72 ~l~~~-----~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSV-----NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGS-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhh-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 99643 4889999999999996 96 899999999999999999987631 22 122
Q ss_pred --CCCchhhHHHHHHHHHHHH
Q 005072 242 --DQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L 260 (715)
+...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 2346788999999998766
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.74 E-value=1.7e-17 Score=155.12 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=106.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCCh-hHHHHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pd-na~~F~~~ 185 (715)
|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+++++. .++.+++.+||++||||.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998875 4578999988774 45789999999999999999997 99999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHH
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELV 256 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l 256 (715)
|... ++++++++||.++..| |.+.+.+++.|+++|++.+.+....+. +... +...+|.++|
T Consensus 73 l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred HHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 9742 7899999999876554 788999999999999999876433332 2222 4444554443
No 47
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.69 E-value=1.4e-17 Score=172.26 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred CChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcccccccchhhhccCCCCCCCCCceeeEEE
Q 005072 477 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 552 (715)
Q Consensus 477 ~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~gr~~~G~~S~~L~~l~~g~~~~~~~~v~v~v 552 (715)
..+|||+.+.+|. ...|+|||+|.+. ++++|.+.++ ...|.+|+||+++.+|+ .+.|..
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEec
Confidence 3679998876663 4679999999764 5666665421 11388999999888876 478888
Q ss_pred ecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005072 553 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 632 (715)
Q Consensus 553 ~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 632 (715)
|.|.|.++.+ .++++|||+|||||||++|+++... . .++++|+++|+.+ |.++. . ....+++++
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~---~----~~~~~~~~~~~~~-d~~~l---~----~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN---N----AVGYAVIEVLSEA-DIQPL---V----HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT---T----CEEEEEEEESSGG-GCCCC---C----CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC---C----CcEEEEEEECCHH-Hhhcc---c----CCCCcEEEE
Confidence 9999998754 4789999999999999999998732 1 4678999999976 65432 1 122345666
Q ss_pred EEecCCCC-ccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHH
Q 005072 633 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 683 (715)
Q Consensus 633 a~Sr~~~~-k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~ 683 (715)
+++.+... ...+.+.+.+. .+-..+.++|+||| ++|+++|++.|.
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred EeCCCCCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 66543221 11222222211 01124578999999 899999999887
No 48
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.68 E-value=3.2e-17 Score=149.91 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L 186 (715)
++|+|+|+|||||.+|+.|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 1 2 2322 123 488999999999999999999999854
Q ss_pred HhhcCCCCCcCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHH
Q 005072 187 TEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (715)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (715)
+++++|+|||+||+.|.+ ||.+++.++++|.. ...... .+..+....+.+.+|.++++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~~-~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSKF-ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEEE-ETTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEEE-ecCCCHHHHHHHHHHHHHhc
Confidence 457899999999999976 99999999999743 222222 12222223456889988775
No 49
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.66 E-value=2.1e-16 Score=152.24 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=109.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|+|+|+|+|+||||+.+|+.|++.+...+ ..++++|+.+.+.++ ...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 457899998876532 3445678999999999996 88775 88999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHHHHh
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~~ 262 (715)
.|... .++|+++++||. |.++|.+.+.+++.|+++|++.+.+...... +....+...+|.+.+...|.+
T Consensus 74 ~l~~~-----~l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 74 TIFAA-----AHNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp HHHHH-----CCTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-----hhCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88754 378999999994 5556889999999999999998866433222 222334566777777666653
No 50
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.65 E-value=2.8e-16 Score=151.14 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=112.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCc-ccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
.++|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+. +.+ +...++.+++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQ--ELRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHH--HHHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHH--HHHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998765 56789999887 543 23456778999999999997 8876 4889
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHHH
Q 005072 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPEL 260 (715)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L 260 (715)
++.|... .++++++++||. |.|+|.+.+.+.+.|+++|++.+.+...... +....+...+|.+.|...+
T Consensus 77 l~~l~~~-----~~~~k~va~fgs----~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~ 147 (159)
T 3fni_A 77 LSTILGS-----VNEKQAVGIFET----GGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWV 147 (159)
T ss_dssp HHHHHHH-----CCTTSEEEEECC----SSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9888764 378999999994 5677888999999999999998876443332 2223445667877777666
Q ss_pred Hh
Q 005072 261 DN 262 (715)
Q Consensus 261 ~~ 262 (715)
.+
T Consensus 148 ~~ 149 (159)
T 3fni_A 148 TR 149 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 51
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=155.11 Aligned_cols=133 Identities=13% Similarity=0.227 Sum_probs=89.9
Q ss_pred EecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc---CCCCCCEEEEEeeccCCcccc-cHHHHHHHHHc---
Q 005072 552 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS--- 624 (715)
Q Consensus 552 v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~---~~~~~~~~Lf~G~R~~~~D~l-y~dEL~~~~~~--- 624 (715)
.|.|.|.++....+|+||||+|||||||++|++++...... +...++++|+||+|+.+ +++ |.+||+++.+.
T Consensus 5 GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~~ 83 (186)
T 3a1f_A 5 GPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQE 83 (186)
T ss_dssp STTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHhh
Confidence 45677776544568999999999999999999998875321 11237899999999998 887 99999999875
Q ss_pred ---CCCcEEEEEEecCCC---Cccccch-----hh----------hhchhH----HHhcc-cCCcEEEEeCCchhhHHHH
Q 005072 625 ---GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSD----IWNML-SEGAYLYVCGDAKSMARDV 678 (715)
Q Consensus 625 ---~~~~~l~~a~Sr~~~---~k~yVq~-----~l----------~~~~~~----i~~~i-~~~~~iYvCGpa~~M~~~V 678 (715)
...+++++++|++.. .+.|++. .+ +-+.+. +.... ..+..||+||| ++|+++|
T Consensus 84 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~v 162 (186)
T 3a1f_A 84 RNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAETL 162 (186)
T ss_dssp TTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHHH
T ss_pred ccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHHH
Confidence 234578888988532 1112220 00 001111 11111 13678999999 8999999
Q ss_pred HHHHHHHH
Q 005072 679 HRTLHTIV 686 (715)
Q Consensus 679 ~~~L~~i~ 686 (715)
++.|.+..
T Consensus 163 ~~~l~~~g 170 (186)
T 3a1f_A 163 SKQSISNS 170 (186)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99887653
No 52
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.60 E-value=9e-16 Score=144.77 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=83.4
Q ss_pred eEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005072 549 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 628 (715)
Q Consensus 549 ~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~ 628 (715)
.|.+|.|+|...++ .++++|||+||||||+++++++..+.+ .++.|+ |+|+++ |++|.+||++++.+ .
T Consensus 4 ~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 35667787765533 689999999999999999999887543 468999 999998 99999999987542 1
Q ss_pred EEEEEEecCCC--------CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 629 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 629 ~l~~a~Sr~~~--------~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEY 130 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHH
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 23333343211 245666554332 111 24568999999 99999999888764
No 53
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.60 E-value=5e-15 Score=137.61 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=105.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCCh-hHHHHHHH
Q 005072 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (715)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pd-na~~F~~~ 185 (715)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+++++. +++.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 4578899988763 45788999999999999999998 49999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc--cCCCCCchhhHHHHHHHHH
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL--GDDDQCIEDDFSAWRELVW 257 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~--gD~~~~~e~~f~~W~~~l~ 257 (715)
+.. .++++++++||.+... ||.+.+.+++.|..+|++.+ +... |.-+. .+.+.+|.+++.
T Consensus 74 l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~--~~~~~~~~~~l~ 135 (137)
T 2fz5_A 74 LAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTAIVNEMPDN--APECKELGEAAA 135 (137)
T ss_dssp HGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEEEEESSSSS--CTHHHHHHHHHH
T ss_pred hhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcEEEeeCCCh--HHHHHHHHHHHh
Confidence 964 4889999999953221 68899999999999999987 3222 22122 566777876653
No 54
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.60 E-value=5.8e-16 Score=148.73 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=82.4
Q ss_pred eEEEecCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCCEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005072 549 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 628 (715)
Q Consensus 549 ~v~v~~~~F~Lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~ 628 (715)
.|..|.|+|.... ..+|++|||+||||||+++++++....+ .+++|+ |+|+++ |.+|.+||++++.+ .
T Consensus 9 ~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~---~ 76 (158)
T 3lrx_A 9 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 76 (158)
T ss_dssp ---CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---E
T ss_pred EEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---e
Confidence 6777877765433 4689999999999999999999987543 478999 999998 99999999988642 1
Q ss_pred EEEEEEecCC------C--CccccchhhhhchhHHHhcccCCcEEEEeCCchhhHHHHHHHHHHH
Q 005072 629 QLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 685 (715)
Q Consensus 629 ~l~~a~Sr~~------~--~k~yVq~~l~~~~~~i~~~i~~~~~iYvCGpa~~M~~~V~~~L~~i 685 (715)
.+..++++.. + .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+.
T Consensus 77 ~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 77 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEY 135 (158)
T ss_dssp EECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGG
T ss_pred EEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2222223211 1 245666544332 111 14568999999 99999999887654
No 55
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.60 E-value=4.8e-16 Score=145.88 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHH
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (715)
|++.|+|+|+||||+.+|++|++.+ .+++.+ .+..++.+||++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~~----------~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQQ----------IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCSE----------EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhcccc----------ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 5689999999999999999886420 123322 13455678999999999999999998884
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005072 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (715)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (715)
. ..++.|+|||+||++| +.||.+++.+++.+ |...+... +.+-.....+.+.+|.+++|.
T Consensus 69 ~----------~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~-el~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 K----------YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp H----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCHHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceE-EEcCCHHHHHHHHHHHHHHHH
Confidence 2 1347899999999999 78999999998776 44322211 111112234668899988875
No 56
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.33 E-value=5.9e-12 Score=138.06 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=114.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
.++++|+|+|+||||+.+|+.|++.+...+ ..++++++.+.+.+ +..+++.+++.+||++||||.|.+| .+..|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998754 46788899876542 2345678999999999999877766 699999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccC--CCCCchhhHHHHHHHHHHHHH
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD--DDQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD--~~~~~e~~f~~W~~~l~~~L~ 261 (715)
+++... .++++++++||. |.++|.+.+.+.+.|..+|++.+.+....+ -+....+.+.+|.+++...++
T Consensus 327 ~~l~~~-----~l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 397 (402)
T 1e5d_A 327 QYIKGL-----RPQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 397 (402)
T ss_dssp HHHHHT-----CCCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhc-----ccCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 998753 378999999994 667899999999999999999886422222 122234566778877776665
Q ss_pred hh
Q 005072 262 NL 263 (715)
Q Consensus 262 ~~ 263 (715)
+.
T Consensus 398 ~~ 399 (402)
T 1e5d_A 398 AK 399 (402)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 57
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.33 E-value=3.4e-12 Score=139.84 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=99.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (715)
.++++|+|+|+||||+.+|+.+++.+.+.+ ..++++|+.+.+.. ++..++..++.+||++|||+.|.||. ++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~~-~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILPV-VSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCGG-GHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchHH-HHHHH
Confidence 578999999999999999999999998764 56788888776542 23455678999999999998777775 99999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
++|... .++|+++++||. |.++|.+.+.+++.|..+|++.+.+
T Consensus 326 ~~l~~~-----~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 326 DDLVGL-----RPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHHH-----CCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred HHHhcc-----ccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecC
Confidence 999754 378999999994 6778999999999999999998864
No 58
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.33 E-value=4e-12 Score=140.16 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=98.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCce-eEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAI-FKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~-v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
..++|+|+|+|++||||.+|+.|++.+.+.|.... +++.|++..+. .++..++.+++.+||++|||+ |++++.+..
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~~-~~~~p~~~~ 340 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTYE-AEIHPLMRF 340 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCTT-SSSCHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCcC-CcCCHHHHH
Confidence 45689999999999999999999999998873211 23445554443 345677889999999999994 778888999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
|+..|... .++|+++++|| +|.|.+.+.+.+.++|+++|++.+-+
T Consensus 341 ~l~~l~~~-----~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 341 TLLEIIDK-----ANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHH-----CCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHhc-----ccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 99998865 37899999999 78888999999999999999986544
No 59
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.30 E-value=2.7e-11 Score=119.23 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=110.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
.|++|+|+|+|+||||+.+|+.|++.+.+ .+ ..++++|+.+.+. +++.+++.+||++||| .|.+|..++.
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~ 73 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKR 73 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHH
Confidence 36799999999999999999999999987 54 5678899988763 4577899999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccc-----------cc---ccCCC-CCc
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-----------VG---LGDDD-QCI 245 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~-----------~g---~gD~~-~~~ 245 (715)
|++++.... ...++|+++++||. |+.. ..+....+.+.+.|..+|...+.. .| .+.-+ ...
T Consensus 74 fld~~~~~~--~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 150 (188)
T 2ark_A 74 FFDDVLGDL--WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEE 150 (188)
T ss_dssp HHHHTGGGT--TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHH
T ss_pred HHHHHhhhh--HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHH
Confidence 999987410 12488999999998 5443 224556677888888888864421 01 11111 122
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 005072 246 EDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 246 e~~f~~W~~~l~~~L~~~~ 264 (715)
.+....|-+.+...+.++.
T Consensus 151 ~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 151 KEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456678777777776654
No 60
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.30 E-value=2.2e-11 Score=120.34 Aligned_cols=128 Identities=13% Similarity=-0.017 Sum_probs=101.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchh-------------HHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~~if~~sTy 170 (715)
|++|+|+|||.+|||+.+|+.|++.+.+.+ ..++++|+.++..... ...+++.+++.+||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 579999999999999999999999998765 5678888877421100 1135678999999999999
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
.|.+|..++.|++++.... ....++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 6889999999999886421 01247899999999987776556778899999999999886643
No 61
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.29 E-value=8.3e-12 Score=117.35 Aligned_cols=98 Identities=17% Similarity=0.411 Sum_probs=74.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCC----CCCCChhH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG----~G~~pdna 179 (715)
++..+|+|+|.||||+.|+++|... ..+ +++.+ . +.+..+..+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~--------~~~-I~~~~--~------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP--------AVR-IPLNE--R------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC--------CEE-CCSST--T------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc--------ccc-ccccc--C------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556899999999999999988431 112 23321 0 12345677999999999 59999999
Q ss_pred HHHHHHHHhhcCCCCCcCCceEEEEeccCCch-hHHHHHHHHHHHHHH
Q 005072 180 ARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 226 (715)
Q Consensus 180 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~ 226 (715)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+.+.
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 999876653 256799999999998 999999999999885
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.22 E-value=8.5e-11 Score=129.57 Aligned_cols=146 Identities=14% Similarity=0.001 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
.+++|+|+|+|.||||+.+|+.|++.+.+.+ ..++++++.+.+.. ...+++..++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 4689999999999999999999999998754 56788898876642 2334688999999999999 55555569999
Q ss_pred HHHHHhhcCCCCCc-CCceEEEEeccCCchhHHHHHHHHHHHHHHH-cCCcccccc---cccCCCCCchhhHHHHHHHHH
Q 005072 183 YKWFTEQKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV---GLGDDDQCIEDDFSAWRELVW 257 (715)
Q Consensus 183 ~~~L~~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~l~~~---g~gD~~~~~e~~f~~W~~~l~ 257 (715)
++++... .+ +++++++||.|... +.+.+.+.+.|.. +|++.+.+. ..+.-+....+...+|.+++.
T Consensus 330 ld~l~~~-----~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 400 (414)
T 2q9u_A 330 LNYVRGL-----TLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLG 400 (414)
T ss_dssp HHHHHHH-----TTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHH
Confidence 9999753 36 89999999987553 5577899999999 999987643 112222222345667776666
Q ss_pred HHHHh
Q 005072 258 PELDN 262 (715)
Q Consensus 258 ~~L~~ 262 (715)
..+.+
T Consensus 401 ~~~~~ 405 (414)
T 2q9u_A 401 KRAIA 405 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 63
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.19 E-value=5e-11 Score=130.77 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=109.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
+..++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++.. .+..++..++.+||++|||+ |.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~l~~~d~iiigsP~y~-~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDRS--EIVKDILESGAIALGAPTIY-DEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCEET-TEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECcccc-ccchHHHHH
Confidence 45689999999999999999999999998754 56788999887642 33457889999999999995 555666999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc-cCCCCCchhhHHHHHHHHHHH
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL-GDDDQCIEDDFSAWRELVWPE 259 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~-gD~~~~~e~~f~~W~~~l~~~ 259 (715)
|++|+...... . ++|+++++||.|... +.+.+.+.+.|..+|++.+.++.. +..+....+...+|.+++...
T Consensus 329 ~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 99999754211 1 689999999987654 567789999999999998766221 111222334556666665443
No 64
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.18 E-value=1.7e-10 Score=113.76 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCcccchh-------------HHHHhhcCCCeEEEEecC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~~if~~sT 169 (715)
|++|+|+|+|.+|||+.+|+.|++.+.+ .+ ..++++|+.+....+. .-.+++..++.+||++||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 78 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPT 78 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeCh
Confidence 5789999999999999999999999987 54 5678889876421100 003567889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
| .|.+|..++.|++++..... ...++++++++|+.+... .......+.+...|..+|+..+.
T Consensus 79 y-~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 79 R-FGNMSGQMRTFLDQTGGLWA-SGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp E-TTEECHHHHHHHTTCHHHHH-HTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred h-cCCchHHHHHHHHHhhhhhh-hcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 9 89999999999998864210 124889999999987655 44556778888889998987654
No 65
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.15 E-value=1.3e-10 Score=111.61 Aligned_cols=133 Identities=13% Similarity=0.103 Sum_probs=89.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccch--------------------hH---HHHhhcCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------DE---YEEKLKKE 160 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~~---~~~~l~~~ 160 (715)
+++++|+|.|+||||+.+|+.|++.+.... +++.+...|...+ ++ ...++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 568999999999999999999999885421 2333333332100 00 01357789
Q ss_pred CeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005072 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (715)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~g 239 (715)
+.+||++||| .|.+|..+..|++.+ .++|+++++|+. |++.+ ..+.+.+.+.|. |++-+-++. .
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~~g~~-~ 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWKDGKL-L 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEECCCEE-C
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEeecceE-E
Confidence 9999999999 689998888876643 378999999996 55555 345677777765 555332111 1
Q ss_pred CCCCCchhhHHHHHHHH
Q 005072 240 DDDQCIEDDFSAWRELV 256 (715)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (715)
.....++++.+|.+++
T Consensus 145 -~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 -NGQITRDLVTEWFEKI 160 (162)
T ss_dssp -CSCCCHHHHHHHHHHT
T ss_pred -eCCCCHHHHHHHHHHh
Confidence 1123578999998764
No 66
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.13 E-value=2.7e-10 Score=112.62 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=94.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCc-ccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
.+++|+|+|+|.||||+.+|+.|++.+... .+++.++ +..+ ...+++..++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~~-~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLSE-DGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCCH-HHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCCH-hHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 467899999999999999999999999753 2344443 1111 1345788999999999999 6999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
|++++...- ....++++++++|+.+...+..+..+...+...|...|..-+
T Consensus 76 fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999886311 012488999999999887776677888999999999988754
No 67
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.11 E-value=4.5e-10 Score=110.97 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccc----------------hhHHHHhhcCCCeEEEEe
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDEYEEKLKKENIVFFFL 167 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~~~~~~~l~~~~~~if~~ 167 (715)
|++|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. .. ..+ .+++..++.+||++
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gs 78 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGS 78 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHh-CChhhhhccCCCccccccccc-HHHHHhCCEEEEEC
Confidence 5799999999 9999999999999998765 56788888775 10 001 45678899999999
Q ss_pred cCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
|+| .|.+|..++.|++++...- ....++++++++|+.+...+.....+...+...|..+|+..+.
T Consensus 79 P~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 79 PTR-YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp ECB-TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred Ccc-ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 999 6999999999999875321 0124889999999987665533456778899999999987654
No 68
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.11 E-value=2.1e-10 Score=114.61 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=100.7
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCc--------------------ccchhHHHHhhcCCCe
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (715)
.+++|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998754 56788898775 210 122456788999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
+||++|+| .|.+|..++.|++++...- ....++|+++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 6999999999999875321 01248899999999876665444677888999999999876543
No 69
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.09 E-value=4.2e-10 Score=109.22 Aligned_cols=134 Identities=14% Similarity=0.194 Sum_probs=90.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchh-----------------------HHHHhhc
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKLK 158 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l~ 158 (715)
..+++++|+|.|.||||+.+|+.|++.+... .+++.+...|...+- ....++.
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 4568899999999999999999999998532 133333333321000 0013577
Q ss_pred CCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccC-CchhHHHHHHHHHHHHHHHcCCccccccc
Q 005072 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGN-RQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (715)
Q Consensus 159 ~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGd-s~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (715)
.++.+||++||| .|.+|..+..|++.+ .++|+++++|+.+. +. +..+.+.+.+.|. |+.- .+-.
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~---~g~a~~~l~~~l~--~~~~-~~g~ 151 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH--------SLKGKTVVPFATSGGSS---IGNSATVLKKTYP--DLNW-KEGR 151 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS--------CCTTSEEEEEEECSSCC---SHHHHHHHHHHST--TSEE-CCCE
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc--------CCCcCEEEEEEecCCCC---cchHHHHHHHHcC--CCee-ccCe
Confidence 899999999999 588888888887665 37899999999743 33 3456677777775 4442 2211
Q ss_pred ccCCCCCchhhHHHHHHHH
Q 005072 238 LGDDDQCIEDDFSAWRELV 256 (715)
Q Consensus 238 ~gD~~~~~e~~f~~W~~~l 256 (715)
.. ....++++..|.+++
T Consensus 152 ~~--~~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 152 LL--NRTDEKAIRAWLDVI 168 (171)
T ss_dssp EC--SSCCHHHHHHHHHHH
T ss_pred Ee--cCCCHHHHHHHHHHh
Confidence 11 113578899998765
No 70
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.03 E-value=5e-10 Score=110.94 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=96.3
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHH-HHhhcCCceeEEecCCCccc-----------chhHHHHhhcCCCeEEEEecC
Q 005072 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~~if~~sT 169 (715)
|++|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+++...+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57899999997 89999999999999 88764 5678899987643 112234567889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
| .|..|..++.|++|+.. ..++|+++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 78899999999999853 25899999999997654 33333334688999999998764
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=98.95 E-value=7.6e-09 Score=101.99 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=115.8
Q ss_pred CceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc---------------------------hhHH
Q 005072 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (715)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (715)
|++|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. ...+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 578999999998 9999999999999998764466889999775421 0123
Q ss_pred HHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCchhH--HHHHHHHHHH
Q 005072 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 223 (715)
Q Consensus 154 ~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~--f~~~~k~ld~ 223 (715)
.+++...+.+||++|+| .|.+|.-.+.|++++..... ....++++++++|+.+...|.. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 46788999999999999 78899999999999863100 0124899999999986665632 5667777888
Q ss_pred HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005072 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (715)
.|..+|++.+..+.....+. .++..++|.++....+.++
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~ 198 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDSV 198 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHHH
Confidence 99999998765443322222 3455578877766655543
No 72
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=98.83 E-value=6.1e-09 Score=98.69 Aligned_cols=127 Identities=9% Similarity=0.160 Sum_probs=84.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCC-Ccccch--------------------hHHHHhhcCCCe
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (715)
+++++|+|.|+||||+++|+.|++++.... .+++...+ .|+.+. .....++..++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999884321 01211111 122100 001235678999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCC
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 242 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~ 242 (715)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+ ..+.+.+.+.+. ++.-+-.+.
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~~g~~----- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVIGVAR----- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEEEEEE-----
T ss_pred EEEEccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeeecccc-----
Confidence 99999999 6999999999998764 36788999999987765 344566666664 333221111
Q ss_pred CCchhhHHHHH
Q 005072 243 QCIEDDFSAWR 253 (715)
Q Consensus 243 ~~~e~~f~~W~ 253 (715)
++.++.+|.
T Consensus 142 --~~~~~~~w~ 150 (151)
T 3edo_A 142 --DDSEVDKWS 150 (151)
T ss_dssp --TTTTHHHHH
T ss_pred --cHHHHHHHh
Confidence 124688885
No 73
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.70 E-value=1.1e-07 Score=97.14 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=110.2
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhh-cCCceeEEecCCCccc----------------------chhHHHHhhc
Q 005072 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (715)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (715)
|++|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.++++ +-..+.+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 578999999986 99999999999999876 4 5678888876532 1123456788
Q ss_pred CCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 005072 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (715)
Q Consensus 159 ~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~ 238 (715)
..+.+||++|+| .|.+|..++.|++++.... ....++|+++++|+.+... ....+.+.+...|..+|+..+.+...
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 999999999999 8899999999999985321 2235899999999865322 12245677888999999987655433
Q ss_pred cCC-CCCchhhHHHHHHHHHHHHH
Q 005072 239 GDD-DQCIEDDFSAWRELVWPELD 261 (715)
Q Consensus 239 gD~-~~~~e~~f~~W~~~l~~~L~ 261 (715)
.+. .....+.+.++.+.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHT
T ss_pred eccCChHHHHHHHHHHHHHHHHHh
Confidence 221 11345566677777666554
No 74
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.69 E-value=8.3e-08 Score=94.37 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=95.4
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCccc------------chhHHHHhhcCCCeEEEEecC
Q 005072 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~~if~~sT 169 (715)
+++|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-..+.+++...+.+||++|+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 468999999985 999999999999887 33 5678888876432 112234678889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
| .|.+|...+.|++++.... . ..++|+++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 83 y-~~~~p~~lK~~iD~~~~~~-~-~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 83 Y-NYSMAGVLKNAIDWASRPP-E-QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp E-TTEECHHHHHHHHHHTCSS-S-CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred c-ccCcCHHHHHHHHHhcccc-C-cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9 7778999999999997421 1 3589999999998744443 235668888999999998765
No 75
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.68 E-value=1.5e-07 Score=92.30 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=94.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhc----CCceeEEecCCCcccc-----------------------hhHHHH
Q 005072 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYADE-----------------------EDEYEE 155 (715)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~~-----------------------~~~~~~ 155 (715)
|+|+|+|||.. |+|+.+|+.+++.+.+.+ +...++++|+.+++.. ...+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 57999999998 999999999999998753 2356788888653220 013456
Q ss_pred hhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 156 ~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
++...+.+||++|+| .|.+|...+.|++++.. .++|+++++|+.|.... ..+...+...|..+|++.+..
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcce
Confidence 788999999999999 78889999999988853 48899999999887432 346678889999999986543
No 76
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.65 E-value=9e-08 Score=92.58 Aligned_cols=114 Identities=10% Similarity=0.191 Sum_probs=86.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCccc-------------chhHHHHhhcCCCeEEEEecC
Q 005072 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------EEDEYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------~~~~~~~~l~~~~~~if~~sT 169 (715)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. +-.++.+++...+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 47999999998 9999999999998753 3455544432 111234567889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
| .|.+|..++.|++|+... .++|+.+++|+. |... .+..+...+...|..+|+..+
T Consensus 74 y-~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEE
T ss_pred c-CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEe
Confidence 9 999999999999998643 488999999984 4221 234677889999999999855
No 77
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.55 E-value=6.4e-07 Score=88.95 Aligned_cols=157 Identities=9% Similarity=0.037 Sum_probs=109.6
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCC--Ccccch---------------------------
Q 005072 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADEE--------------------------- 150 (715)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~~--------------------------- 150 (715)
|++|+|+|||.. |+|+.+|+.+.+.+++.++...++++|+. +.....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999987 99999999999999987655678889887 644210
Q ss_pred -----hHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCchhHHHHH
Q 005072 151 -----DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQYEHFNKI 217 (715)
Q Consensus 151 -----~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~f~~~ 217 (715)
..+.+++...+.+||++|+| .+.+|.-.+.|++++..... ....++|+++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 11345678899999999999 89999999999999864110 11247899999996533345321234
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005072 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (715)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (715)
...+...|.-+|.+.+-.+.....+. .++..++|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 46677788889998765544333332 335667777665554443
No 78
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.45 E-value=2.6e-06 Score=87.27 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=98.0
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc---------hhHHHHhhcCCCeEEEEecCC
Q 005072 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~~if~~sTy 170 (715)
..+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -..+.+++...+.+||++|+|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 35689999999985 999999999999998754 56889999876521 123456788899999999999
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
.|.+|.-.+.|++|+.........++|+++++++.+-.. ... .+...+...|..+|+..+
T Consensus 110 -n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 110 -HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp -SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred -CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEe
Confidence 999999999999999642111135899999999984322 111 355788888999998855
No 79
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.41 E-value=2e-06 Score=83.36 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCccc------------------chhHHHHhhcCCCe
Q 005072 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENI 162 (715)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~ 162 (715)
++|+|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +.....+++...+.
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCE
Confidence 3578999999965 99999999998755 235555554422 11234567889999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCC------CCCcCCceEEEEeccCCchh-HHHHHHHHHHHHHHHcCCccccc
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEG------GEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~------~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
+||++|+| .|.+|..++.|++++...... ...++++++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus 75 ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999 888999999999988642110 01478999999988654211 23446678888899999986643
No 80
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.33 E-value=5e-06 Score=86.49 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=97.6
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc----------hhHHHHhhcCCCeEEEEecC
Q 005072 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (715)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~~if~~sT 169 (715)
..+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998754 56888998876521 12345678889999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
| .|.+|.-.+.|++|+.........++|+.+++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999642111235899999999985322 222 345678888888998855
No 81
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.32 E-value=7.2e-06 Score=80.63 Aligned_cols=126 Identities=12% Similarity=0.141 Sum_probs=95.1
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCcccc-----------hhHHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~~if~~sTy 170 (715)
|++|+|++||. .|+++.+|+.+++.+. .+ ..++++|+.++..- -.++.+++...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~--~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DR--AQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TS--SEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CC--CEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999986 32 56788888765421 123456788999999999999
Q ss_pred CCCCCChhHHHHHHHHHhhcC-----CCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005072 171 GDGEPTDNAARFYKWFTEQKE-----GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (715)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~-----~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (715)
.|..|.-.+.|++|+..... ....++|+++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 88999999999999975211 1235899999999886552 22334577888899999986543
No 82
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.29 E-value=1e-05 Score=80.69 Aligned_cols=158 Identities=9% Similarity=0.060 Sum_probs=109.7
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCcccc----------------------------hhH
Q 005072 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------------------EDE 152 (715)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------------------~~~ 152 (715)
|++|+|++||..+ ++..+|+.+.+.+++.++...++++||.+.+.. ..+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 5799999999765 599999999999988744466788888654210 112
Q ss_pred HHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc-------CC-----CCCcCCceEEEEeccC--Cchh-----H
Q 005072 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-------EG-----GEWLQKLKYGVFGLGN--RQYE-----H 213 (715)
Q Consensus 153 ~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~-------~~-----~~~l~~~~~aVFGlGd--s~Y~-----~ 213 (715)
+.+++...+.+||++|+| .+.+|.-.+.|++++.... .. ...|+|+++.++.... ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 345678899999999999 8999999999999994310 11 2258999988886633 2232 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005072 214 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 214 f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (715)
+......+...|.-+|.+.+-.+..+..+. .+++.++|.++....+.++
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~l 208 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLAL 208 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHHH
Confidence 333446677788888998764443332232 4567778877766655543
No 83
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.28 E-value=2.2e-05 Score=78.73 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=112.6
Q ss_pred cCCceEEEEEeCC------CchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCC
Q 005072 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (715)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~ 175 (715)
..|++|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..+-....+.+...+.+||++|.| .+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 3478999999997 3688999999999998765 5678889875 222233456788999999999999 8899
Q ss_pred ChhHHHHHHHHHhhcC-------------------CCCCcCCceEEEEeccCCchhHH-------HH-----HHHHHHHH
Q 005072 176 TDNAARFYKWFTEQKE-------------------GGEWLQKLKYGVFGLGNRQYEHF-------NK-----IAKVVDEI 224 (715)
Q Consensus 176 pdna~~F~~~L~~~~~-------------------~~~~l~~~~~aVFGlGds~Y~~f-------~~-----~~k~ld~~ 224 (715)
|.-.+.|++++-.... ....|+|+++.|+-..+...+.| +. .-.-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 9999999998854311 12358999988776654442323 22 22234667
Q ss_pred HHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 225 L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778999877766655543 4578889888877777664
No 84
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.22 E-value=8.1e-06 Score=80.30 Aligned_cols=125 Identities=9% Similarity=0.133 Sum_probs=95.3
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHH----HHHhhcCCceeEEecCCCcccc-------------hhHHHHhhcCCCe
Q 005072 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYADE-------------EDEYEEKLKKENI 162 (715)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~~-------------~~~~~~~l~~~~~ 162 (715)
..+.+|+++.||.. |++..+|+.+++ .+.+++....++++|+.+++.. -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 45789999999975 889999999999 6665543467888888766421 1134567888999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
+||++|+| .|.+|.-++.|++|+.. ..++|++.++++.|... .+....-..+...|..+|+..+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 99999999 99999999999999964 25899999999987433 3332222347888889999865
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.17 E-value=2.3e-05 Score=77.49 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=94.4
Q ss_pred CceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCceeE-EecCCCccc------------chhHHHHhhcCCCeEEEEec
Q 005072 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (715)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~------------~~~~~~~~l~~~~~~if~~s 168 (715)
+++|+|++|| ..|+++.+|+.+++.+.. + ..++ ++|+.+... +-..+.+++...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~-g--~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT-T--EEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC-C--CEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4689999999 669999999999988752 2 5577 778765432 11234566888999999999
Q ss_pred CCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
+| .|..|.-.+.|++|+... ....+.|+++++++.+-..+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999762 23468999999999864444322 2456788889999998663
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.11 E-value=1.5e-05 Score=78.62 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=111.7
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCccc-------------------chhHHHHhhcCCCeE
Q 005072 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (715)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~~ 163 (715)
|+|+|++||-. +++..+|+.+.+.+ ..+ ..++++|+.+... +-..+.+++...+.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 58999999964 46789999998888 443 5678888865432 112345678889999
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCc--hhHH--HHHHHHHHHHHHHcCCc
Q 005072 164 FFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 231 (715)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~--Y~~f--~~~~k~ld~~L~~lGa~ 231 (715)
||++|.| .+.+|.-.+.|++++.... . ....|+|+++.++..+... |..+ ......+...|.-+|.+
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 9999999999999985321 0 1135899999998876655 4211 11124455666677998
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 232 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 232 ~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
.+-.+..+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666666666677889999999877777665
No 87
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.05 E-value=3.7e-05 Score=75.60 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=106.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcc----cchhHHHHhhcCCCeEEEEecCCCCCCCChhH
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna 179 (715)
|++|+|++||..++...+++.+.+.+++.+ ..++++||.+.. .+-....+++...+.+||++|.| .+..|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 578999999998875578888998887754 447888885432 22233456789999999999999 88899999
Q ss_pred HHHHHHHHhhc----CCCCCcCCceEEEEeccCCc---hh-------HHHHHHHHHHHHHHHcCCcccccccccCCCCC-
Q 005072 180 ARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 244 (715)
Q Consensus 180 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~- 244 (715)
+.|++++.... ..+..|+|+++.++...... |. .+...-+-+...|.-+|.+.+-+....+.+..
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999885321 12346899999988775444 32 12334444667788889987766555544321
Q ss_pred -----chhhHHHHHHHHHHHHHhhh
Q 005072 245 -----IEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 245 -----~e~~f~~W~~~l~~~L~~~~ 264 (715)
.++++++..++....|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~~ 182 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDALQ 182 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34556665555555555543
No 88
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.05 E-value=4.7e-05 Score=79.04 Aligned_cols=158 Identities=13% Similarity=-0.021 Sum_probs=106.3
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCccc---------------------------------
Q 005072 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (715)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (715)
||+|+|+|||.. |++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 689999999999998754 5678888876532
Q ss_pred ---chhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hhH-
Q 005072 149 ---EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH- 213 (715)
Q Consensus 149 ---~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 213 (715)
+-....+++...+.+||++|.| .+..|.-.+.|++++..... +...|+|+++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 1111234578899999999999 88899999999999853210 1235899998888764333 421
Q ss_pred -HH----HHHHHHH-HHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 214 -FN----KIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 214 -f~----~~~k~ld-~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
.+ .....+. ..|.-+|.+.+-++..+..+...++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1222222 245567888765544443333335567777777777777665
No 89
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.04 E-value=4.5e-05 Score=76.06 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=111.1
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCcccc-----------------------------h
Q 005072 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------------------E 150 (715)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------------------~ 150 (715)
|++|+|++||-. +++..+|+.+.+.+++.++...++++||.+++.. -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999955 8899999999999988755567888888654320 0
Q ss_pred hHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchhH-----HHHH
Q 005072 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 217 (715)
Q Consensus 151 ~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 217 (715)
.++.+++...+.+||++|.| .+..|.-.+.|++++.... . ....|+|+++.++......|.. |...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12345678889999999999 8999999999999985321 0 1225889998888753333422 3334
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005072 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (715)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (715)
...+...|.-+|.+.+-.+.....+.. .+.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~~-~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQF-PDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTTS-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEeccccC-chHHHHHHHHHHHHHHHH
Confidence 566778888899987655443333332 446778887766655543
No 90
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.02 E-value=0.00013 Score=72.30 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=103.8
Q ss_pred CCceEEEEEeCCC------chHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC
Q 005072 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (715)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p 176 (715)
+..+|+|+.||-- +++..+|+.+++.+.+.+ ..++++|+.+ ..+-..+.+++...+.+||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~-~~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADS-DYDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSS-CCCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCc-cccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 5688899975 223344567889999999999999 89999
Q ss_pred hhHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchhHHH------------HHHHHHHHHH
Q 005072 177 DNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 225 (715)
Q Consensus 177 dna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~~k~ld~~L 225 (715)
.-.+.|++.+.... .+...++|+++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764211 0123589999999887554322221 2333467788
Q ss_pred HHcCCcccccccccCCCC--CchhhHHHHHHHH
Q 005072 226 ANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELV 256 (715)
Q Consensus 226 ~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l 256 (715)
.-+|++.+-+....+.+. ..++.++.+++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHL 199 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHHH
Confidence 888998765554443322 3455555555443
No 91
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.26 E-value=7.8e-07 Score=88.21 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=92.5
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEe-cCCCc---ccc---------hhHHHHhhcCCCeEEEEec
Q 005072 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFLA 168 (715)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~~if~~s 168 (715)
+++|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.+. +.+ -..+.+++...+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 478999999986 8999999999998875 3 456777 77652 111 1123456788899999999
Q ss_pred CCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005072 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (715)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (715)
+| .|..|.-.+.|++|+.... ...++|+++++|+.+...+. ...+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~--~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 99 8889999999999997531 11589999999996433332 234567788888888988664
No 92
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=97.93 E-value=9.3e-05 Score=74.77 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=109.0
Q ss_pred ceEEEEEeCCCc--hHHHHHHHHHHHHHhhcCCceeEEecCCCccc----------------------------------
Q 005072 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (715)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (715)
|+|+|++||... ++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 789999999764 49999999999998875 5678888865421
Q ss_pred -ch-hHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hhH--
Q 005072 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH-- 213 (715)
Q Consensus 149 -~~-~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~-- 213 (715)
+| ....+++...+.+||++|.| .+..|.-.+.|++++..... ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 00 11234578899999999999 89999999999999853210 1135899999888654333 421
Q ss_pred HHHHHHH----HHH-HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhhC
Q 005072 214 FNKIAKV----VDE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 265 (715)
Q Consensus 214 f~~~~k~----ld~-~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 265 (715)
++...+. +.+ .+.-+|.+.+-+....+.+...+++..+|.++....|.++..
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2221121 111 223357776656556666666788899999998888887653
No 93
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=97.80 E-value=0.00065 Score=66.56 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=88.5
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCccc---ch--------hHHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EE--------DEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~--------~~~~~~l~~~~~~if~~sTy 170 (715)
+|+|.|+.||. ...+..+|+.+++.+.. ...++++|+.+... +. ..+.+.+...+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 46899999994 45678888888776643 25677888766422 11 11235678899999999999
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005072 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (715)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (715)
+|..|.-.+.|++|+.... ....+.|+.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 9999999999999997421 23468999999998644343322 234567778888998754
No 94
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=97.78 E-value=0.00033 Score=70.45 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=113.2
Q ss_pred CCceEEEEEeCC-----CchHHHHHHHHHHHHHhhcCCc-eeEEecCCCcccc--h------------------------
Q 005072 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--E------------------------ 150 (715)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--~------------------------ 150 (715)
.|++|+|+.||- .+++..+++.+.+.+++.++.. .++++||.+++.. +
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999994 5899999999999998876556 7888998654321 0
Q ss_pred ---hHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhc------CCC--CCc-CCceEEEEeccCCch------h
Q 005072 151 ---DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------EGG--EWL-QKLKYGVFGLGNRQY------E 212 (715)
Q Consensus 151 ---~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~~~--~~l-~~~~~aVFGlGds~Y------~ 212 (715)
..+.+++...+.+||++|.| .+..|.-.+.|++++.... ..+ ..+ +|++..|+......| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 12345677889999999999 9999999999999986421 011 235 789988887633334 2
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccccCCC-CCchhhHHHHHHHHHHHHHhhh
Q 005072 213 HFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 213 ~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
.+......+...|.-+|.+.+-.+.....+ ...++.++++.+++-...++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888888999876544332222 2357778888887766555543
No 95
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=97.73 E-value=0.00034 Score=68.72 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=101.8
Q ss_pred CCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeE-EecCCCcccc-------------hhHHHHhhcCCCeEEEE
Q 005072 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE-------------EDEYEEKLKKENIVFFF 166 (715)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~-------------~~~~~~~l~~~~~~if~ 166 (715)
.+++|+++.||- .+++..+|+.+++.+ .. ...++ ++|+.+...- -..+.+++...+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 357999999995 578888888776533 22 24567 7787754321 11245677889999999
Q ss_pred ecCCCCCCCChhHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc-c-cc------c
Q 005072 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VG------L 238 (715)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~-~-~g------~ 238 (715)
+|+| .|..|.-.+.|++|+... ....+.|+++++++..-..+... .+...+...|..+|+..+- | .. .
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhc--CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 999999999999999852 12358999999998622222222 3557788889999998552 1 11 1
Q ss_pred cCCC-CC-chhhHHHHHHHHHHHHHhhh
Q 005072 239 GDDD-QC-IEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 239 gD~~-~~-~e~~f~~W~~~l~~~L~~~~ 264 (715)
-|++ .. .+++..+..+.+...+....
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 1222 11 24556666666666555544
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.71 E-value=0.00034 Score=67.82 Aligned_cols=151 Identities=8% Similarity=-0.010 Sum_probs=103.9
Q ss_pred ceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHH
Q 005072 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (715)
|+|+|++||-. +.+..+++..+ +.. ..++++||.+ ..|-....+++...+.+||.+|.| .+..|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~----~~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAI----ENF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHH----TTC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHH----hcC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 57999999965 44444443333 332 3478999986 444445567889999999999999 8889999999
Q ss_pred HHHHHHhhc---CCCCCcCCceEEEEeccCCchhH----------HHHHHHHHHHHHHHcCCcccccccccCCCCCchhh
Q 005072 182 FYKWFTEQK---EGGEWLQKLKYGVFGLGNRQYEH----------FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248 (715)
Q Consensus 182 F~~~L~~~~---~~~~~l~~~~~aVFGlGds~Y~~----------f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~ 248 (715)
|++.+-... ..+..|+|+++.++.......+. +...-+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 999864310 11235899999888765444222 23344455666777899877666665555566888
Q ss_pred HHHHHHHHHHHHHhh
Q 005072 249 FSAWRELVWPELDNL 263 (715)
Q Consensus 249 f~~W~~~l~~~L~~~ 263 (715)
.++|.++....|.+.
T Consensus 153 ~~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 153 QQRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccc
Confidence 999999887777643
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.33 E-value=0.0018 Score=71.11 Aligned_cols=158 Identities=10% Similarity=0.061 Sum_probs=105.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCC----cccchhHHHHhhcCCCeEEEEecCCCCCCCChh
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD----YADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~----~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdn 178 (715)
.+++|+|++||-.++...+.+.+++.+... ..++++||.+ +..+-....+.+...+.+||++|.| .+..|.-
T Consensus 235 ~~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~ 310 (413)
T 3l9w_A 235 SSGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPL 310 (413)
T ss_dssp --CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHH
T ss_pred CCCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHH
Confidence 347899999998877655788888877653 3467887732 2233334567789999999999999 8889999
Q ss_pred HHHHHHHHHhhc----CCCCCcCCceEEEEeccCCchhH--------HHHHHHHHHHHHHHcCCcccccccccCCCCCch
Q 005072 179 AARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQYEH--------FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIE 246 (715)
Q Consensus 179 a~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~Y~~--------f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e 246 (715)
.+.|++++.... ..+..|+|+++.++.......+. |...-.-+...|.-+|.+-+-+........-.+
T Consensus 311 lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d 390 (413)
T 3l9w_A 311 LKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDD 390 (413)
T ss_dssp HHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCH
T ss_pred HHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCH
Confidence 999999885321 12335899998877553222122 222335667777888998765554443333345
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 005072 247 DDFSAWRELVWPELDNLL 264 (715)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (715)
++..++.++....|..+.
T Consensus 391 ~~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 391 ETLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777766666666554
No 98
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=96.97 E-value=0.0072 Score=62.71 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=104.9
Q ss_pred CCceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccc-------------------------------
Q 005072 103 GKQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------- 149 (715)
Q Consensus 103 ~~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------- 149 (715)
..|||+|+||+ ..+.+..+++.+.+.+++.+ ..|+++||-+...+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGT 98 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCC
Confidence 45789999998 44678889999999998876 56888888432211
Q ss_pred ----hhHHHHhhcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcC----------------CCCCcCCceEEEEeccCC
Q 005072 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------------GGEWLQKLKYGVFGLGNR 209 (715)
Q Consensus 150 ----~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~----------------~~~~l~~~~~aVFGlGds 209 (715)
-....+.+...+.+||+.|.| .+.+|.-.+.|++..-.... ....|+|+++.++-.-+.
T Consensus 99 ~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~ 177 (280)
T 4gi5_A 99 QSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGG 177 (280)
T ss_dssp SCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSS
T ss_pred CcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCC
Confidence 111234577889999999999 88889989998887743110 122478888766544333
Q ss_pred chhHHHH--HHHHHHHHHH--------HcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005072 210 QYEHFNK--IAKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (715)
Q Consensus 210 ~Y~~f~~--~~k~ld~~L~--------~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (715)
..+.|.. ....+++.|. =+|.+.+-|....+.+...++++.+|.+++-..|..+.
T Consensus 178 ~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 178 WAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp CGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 3222211 1112333332 23666666666666666678899999999888888765
No 99
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=81.79 E-value=2.4 Score=43.95 Aligned_cols=52 Identities=13% Similarity=0.360 Sum_probs=44.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCC
Q 005072 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (715)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (715)
.|+...|+.++|+.+++++..+....++||+|+.+ ..+.|+||.|+.|.++.
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 46678899999999999987666778999999965 47899999999998764
No 100
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=65.91 E-value=12 Score=33.73 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=60.6
Q ss_pred EEEEeCCCchHHHHHHHHHHH-HHhhcCCceeEEecCCCcccchhHHHHhhcCCCe-EEEEecCCCCCCCChhHHHHHHH
Q 005072 108 TIFFGTQTGTAEGFAKALADE-ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKW 185 (715)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-~if~~sTyG~G~~pdna~~F~~~ 185 (715)
.|+-++.-|..-.+-..+... ++..| ++|+++...-+ .+++.+...+++. +|.+|++. +.-.+.+.++.+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G----~~Vi~lG~~~p-~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAG----FNVVNIGVLSP-QELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQK 77 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTT----CEEEEEEEEEC-HHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHH
Confidence 355566666555555554444 44444 57777755322 2334444444443 44444444 4444557777777
Q ss_pred HHhhcCCCCCcCCceEEEEecc---CCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005072 186 FTEQKEGGEWLQKLKYGVFGLG---NRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (715)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (715)
|++.. +.+.++.|=|-. ...|+ ...+.+.++|+..+++.|
T Consensus 78 l~~~g-----~~~i~v~vGG~~~~~~~~~~-------~~~~~~~~~G~d~~~~~g 120 (137)
T 1ccw_A 78 CDEAG-----LEGILLYVGGNIVVGKQHWP-------DVEKRFKDMGYDRVYAPG 120 (137)
T ss_dssp HHHTT-----CTTCEEEEEESCSSSSCCHH-------HHHHHHHHTTCSEECCTT
T ss_pred HHhcC-----CCCCEEEEECCCcCchHhhh-------hhHHHHHHCCCCEEECCC
Confidence 87631 345666555532 22232 234678899999988654
No 101
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=65.34 E-value=14 Score=32.29 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=36.0
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcc
Q 005072 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (715)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (715)
..+++|+++=||-.||+.-++.+|.+.+...+....+...++.++.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 64 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh
Confidence 3567899999999999999999999999887643345556666553
No 102
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=52.97 E-value=23 Score=36.20 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=41.1
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceeEEEEEeCCCCCccCCCCeEEEccCC
Q 005072 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (715)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (715)
++...++.++|+..+.++.++....++++.|..+. .+.|+||.|+.|..+.
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 73 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSS
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCC
Confidence 44567788999999998855555779999999764 5899999999998764
No 103
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=45.21 E-value=37 Score=29.20 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=41.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (715)
+++|+++=|+--||+ -+++++.+.++.++....+.-.++.+.. +.+.+++ +|+..|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~-------~~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAG-------EKGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTT-------HHHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhccCCC-EEEEccch
Confidence 568999999988888 8999999999988754445555666554 2344566 45555554
No 104
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.48 E-value=29 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhccCC
Q 005072 65 LIGCVVVFILRRSSS 79 (715)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (715)
++....+++|||+..
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 333344555665543
No 105
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=43.17 E-value=29 Score=29.84 Aligned_cols=55 Identities=9% Similarity=0.210 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEec
Q 005072 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168 (715)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~s 168 (715)
++|+++=||-.||+ -++++|.+.+...+....+...++.++. +.+.++++ |+.++
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~-------~~~~~~D~-Ii~t~ 59 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLS-------EVVDRFDV-VLLAP 59 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHH-------HHTTTCSE-EEECS
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhcCCCCE-EEECC
Confidence 56999999999999 9999999999887643344555555433 23455663 44444
No 106
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.23 E-value=38 Score=34.14 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=40.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCChhHHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (715)
.|++|+|+=|++. +..|..|.+.|++.+ ..|++++.++...+ .++|.+++++|+.- +....-.++..+.+
T Consensus 3 ~m~~vLiV~g~~~---~~~a~~l~~aL~~~g--~~V~~i~~~~~~~~----~~~L~~yDvIIl~d-~~~~~l~~~~~~~L 72 (259)
T 3rht_A 3 AMTRVLYCGDTSL---ETAAGYLAGLMTSWQ--WEFDYIPSHVGLDV----GELLAKQDLVILSD-YPAERMTAQAIDQL 72 (259)
T ss_dssp ---CEEEEESSCT---TTTHHHHHHHHHHTT--CCCEEECTTSCBCS----SHHHHTCSEEEEES-CCGGGBCHHHHHHH
T ss_pred CCceEEEECCCCc---hhHHHHHHHHHHhCC--ceEEEecccccccC----hhHHhcCCEEEEcC-CccccCCHHHHHHH
Confidence 3678888833332 233555666666554 55777777665322 24688999887762 22122233445566
Q ss_pred HHHHH
Q 005072 183 YKWFT 187 (715)
Q Consensus 183 ~~~L~ 187 (715)
.+|.+
T Consensus 73 ~~yV~ 77 (259)
T 3rht_A 73 VTMVK 77 (259)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 107
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=38.98 E-value=31 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhccCC
Q 005072 62 IAVLIGCVVVFILRRSSS 79 (715)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (715)
++++++..+++++||++.
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 444444444455555543
No 108
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.59 E-value=37 Score=24.60 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=6.2
Q ss_pred HHHHHHHhhhccC
Q 005072 66 IGCVVVFILRRSS 78 (715)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (715)
+...++++|||+.
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3333445555554
No 109
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=34.82 E-value=33 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=31.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCC-ceeEEecCCC
Q 005072 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDIDD 145 (715)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl~~ 145 (715)
+++|+++-++--||+.-++.+|.+.+...+.. ..+...++.+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~ 60 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGE 60 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHH
Confidence 57899999998999999999999999876533 3344444443
No 110
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.85 E-value=27 Score=36.69 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCeEEEecCCc--chhHHHHHHHHHHhh
Q 005072 565 VPIIMIGPGTG--LAPFRGFLQERFALQ 590 (715)
Q Consensus 565 ~piImIa~GTG--IAPfrs~lq~~~~~~ 590 (715)
+.|++.||||| |-|.+++.++..+++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 45889999997 899999999887653
No 111
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=33.11 E-value=35 Score=29.83 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCccc-chhHHHHhhcCCCeEEEE
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-EEDEYEEKLKKENIVFFF 166 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-~~~~~~~~l~~~~~~if~ 166 (715)
+..-+.|.|||+.+++.+.++.|.+ .+ ..+.++++-...+ +...+.+.+.+.+.++++
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~----~G--i~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKE----EG--ISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHH----TT--CCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CCCEEEEEECccHHHHHHHHHHHHH----CC--CceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 3345677799999999998876654 33 4467777765543 223334445555554443
No 112
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=29.03 E-value=2.3e+02 Score=28.05 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=49.6
Q ss_pred CceEEEEEeCCCchH---------HHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCC
Q 005072 104 KQKVTIFFGTQTGTA---------EGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE 174 (715)
Q Consensus 104 ~~~v~I~YgSqtGta---------e~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~ 174 (715)
..+|+|+=+-+...- +.++..|++.|...+ ..|++..+++..... -.+.|.+++++|+...+.|+--
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~g--f~V~~~t~dd~~~~~--~~~~L~~~DvvV~~~~~~~~~l 82 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAG--FDAATAVLDEPEHGL--TDEVLDRCDVLVWWGHIAHDEV 82 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTT--CEEEEEESSSGGGGC--CHHHHHTCSEEEEECSSCGGGS
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCC--cEEEEEeccCccccC--CHhHHhcCCEEEEecCCCCCcC
Confidence 467888744332221 123445566666544 566666554432100 0245889999998755553333
Q ss_pred CChhHHHHHHHHHhhcCCCCCcCCceEEEEecc
Q 005072 175 PTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLG 207 (715)
Q Consensus 175 ~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlG 207 (715)
.++..+.|.+|+.+ |.-+.++-.|
T Consensus 83 ~~~~~~al~~~V~~---------GgG~vgiH~a 106 (252)
T 1t0b_A 83 KDEVVERVHRRVLE---------GMGLIVLHSG 106 (252)
T ss_dssp CHHHHHHHHHHHHT---------TCEEEEEGGG
T ss_pred CHHHHHHHHHHHHc---------CCCEEEEccc
Confidence 44446677777764 5555555444
No 113
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=29.02 E-value=42 Score=31.44 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=40.8
Q ss_pred cCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005072 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (715)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (715)
.+..+++|+-.||....-++..+..+.++|.++|++...-.-..|+...+.+.+..|
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 567899999999997666777888899999999997554333444433444455444
No 114
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=27.50 E-value=99 Score=31.37 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhh-cCCCeEEEEecCC-CCCCCChhHHHHHHHHHhhcCCCC
Q 005072 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKL-KKENIVFFFLATY-GDGEPTDNAARFYKWFTEQKEGGE 194 (715)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l-~~~~~~if~~sTy-G~G~~pdna~~F~~~L~~~~~~~~ 194 (715)
|+...++.+++.+.+++-+..+.++|+.....-......-+ +.--.+-|+.--. |...-|++...|.+.|...
T Consensus 122 N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~~g~~~~~~~l~~~~~~l~~~----- 196 (275)
T 3no5_A 122 NPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVGPLHIQFVMGIKNAMPVDREVLEFYVQTLKRL----- 196 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCSSCEEEEEECCTTSCCCCHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCCCeeEEEEeCCCCCCCCCHHHHHHHHHHHHhC-----
Confidence 56778888888888887555567777654321101111112 2223444444332 2322233545555555431
Q ss_pred CcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005072 195 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (715)
Q Consensus 195 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (715)
-.+..++|+|+|-.+++ ++.. =..+|+. +-+|+-|.
T Consensus 197 -~~~~~w~v~g~Gr~~~p-~~~~-------A~~~GGh--vRVGlEDn 232 (275)
T 3no5_A 197 -SPDATWTGAGIGRHQLT-MARW-------SLELGGH--CRTGLEDN 232 (275)
T ss_dssp -CTTCEEEEEECGGGHHH-HHHH-------HHHHTCE--EEESTTTC
T ss_pred -CCCCeEEEEecCHhhHH-HHHH-------HHHhCCC--eEEcCCcc
Confidence 23679999999977763 2222 2245765 24566553
No 115
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=25.47 E-value=1.1e+02 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=34.5
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcC-CceeEEecCCCc
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDIDDY 146 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~-~~~v~v~dl~~~ 146 (715)
.+++|+++=|+-.||+..++.+|.+.+...+. ...+...++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 46789999999999999999999999987663 344555566554
No 116
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=23.82 E-value=33 Score=21.42 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.5
Q ss_pred CceEEEEeccCC
Q 005072 198 KLKYGVFGLGNR 209 (715)
Q Consensus 198 ~~~~aVFGlGds 209 (715)
.+-|-|||+||-
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 467889999974
No 117
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.53 E-value=34 Score=31.90 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.7
Q ss_pred cCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHH
Q 005072 196 LQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (715)
Q Consensus 196 l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (715)
.+..+++|+-.||.-+ .-++..+..+.++|++.|++...-.-..|+ ..+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4567999999999876 456777888999999999986543334455 55666666654
No 118
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=23.40 E-value=1e+02 Score=32.00 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCC-eEEEEecCCCCCCCChhHHHHHHHHHhhcCCCCC
Q 005072 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEW 195 (715)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~ 195 (715)
|+...++.+++.+++.+-+..+.++|+.....-.....+-+-+.. .+-|+.- +..|. |.+...+...+.. .
T Consensus 164 n~~~~i~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlG-v~~g~-p~~p~~L~~~~~~------l 235 (316)
T 3c6c_A 164 NTTRTLRAMARRFQELGIKPELEVFSPGDILFGKQLIEEGLIDGVPLFQMVLG-VLWGA-PASTETMIYQRNL------I 235 (316)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEECS-CTTSC-CSCHHHHHHHHTT------S
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEe-cCCCC-CCCHHHHHHHHHh------c
Confidence 666777777777777775555667666543211111111122334 4444444 53454 4556677666643 2
Q ss_pred cCCceEEEEeccCCchh
Q 005072 196 LQKLKYGVFGLGNRQYE 212 (715)
Q Consensus 196 l~~~~~aVFGlGds~Y~ 212 (715)
..+..++++|.|-.+.+
T Consensus 236 p~~~~wsv~g~Gr~q~p 252 (316)
T 3c6c_A 236 PANAQWAAFGIGRDQMP 252 (316)
T ss_dssp CTTSEEEEECCGGGHHH
T ss_pred CCCCeEEEEecCcchHH
Confidence 35788999999977764
No 119
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=23.11 E-value=97 Score=31.58 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhc-CC-CeEEEEecCCCCCCCChhHHHHHHHHHhhcCCC
Q 005072 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KE-NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGG 193 (715)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~-~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~ 193 (715)
-|+...++.+++.+.+.+-+..+.++|+.....-......-+- +. -.+.|+.- +..|. |.+...+...+...-
T Consensus 126 ~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gl~p~~p~~~~~VlG-v~~g~-~~~~~~L~~~~~~lp--- 200 (282)
T 2y7e_A 126 INHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKKGIITQNPLHIQFVLG-VPGGM-SGKPKNLMYMMEHLK--- 200 (282)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHTTSCCCSSCEEEEEEC-CTTSC-CCCHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcCCCCCCCeEEEEEEe-cCCCC-CCCHHHHHHHHHhcc---
Confidence 3677778888888888775555667666543211000011112 22 23344443 53343 344555655554320
Q ss_pred CCcCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005072 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (715)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (715)
....+..++|+|.|-.+.+ ++. .=..+|+. +-+|+-|.
T Consensus 201 ~~~~~~~wsv~g~Gr~q~p-~~~-------~A~~~GGh--vRVGlEDn 238 (282)
T 2y7e_A 201 EEIPTATWAVAGIGRWHIP-TSL-------IAMVTGGH--IRCGFEDN 238 (282)
T ss_dssp HHSTTCEEEEEECGGGHHH-HHH-------HHHTTTCE--EEESTTTC
T ss_pred cccCCCeEEEEecCcchHH-HHH-------HHHHcCCC--eEEccccc
Confidence 0011677999999977764 222 22356776 34566554
No 120
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=22.64 E-value=2.9e+02 Score=27.88 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=45.5
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCC-eEEEEecCCCCCCCChhHHH
Q 005072 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAAR 181 (715)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~~if~~sTyG~G~~pdna~~ 181 (715)
+.++|.|+|++.+-.....++.+.+.+++.+..+....++....+. .....++...+ -+||+ .++ ++.+..
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~--~~~~~~l~~~~~d~v~~-~~~-----~~~a~~ 219 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDF--SAQLSVAMSFNPDAIYI-TGY-----YPEIAL 219 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCC--HHHHHHHHHTCCSEEEE-CSC-----HHHHHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccH--HHHHHHHHhcCCCEEEE-ccc-----hhHHHH
Confidence 5689999998766667777888888888766322211133322222 12234443332 23444 333 256888
Q ss_pred HHHHHHhh
Q 005072 182 FYKWFTEQ 189 (715)
Q Consensus 182 F~~~L~~~ 189 (715)
|++.+.+.
T Consensus 220 ~~~~~~~~ 227 (366)
T 3td9_A 220 ISRQARQL 227 (366)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88888764
No 121
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=22.43 E-value=75 Score=32.47 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHh-hcCCCeEEEEecCCCCCCCChhHHHHHHHHHhhcCCCC
Q 005072 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGE 194 (715)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~ 194 (715)
-|++..++.+++.+.+.+-+..+.++|+.....-.....+- +..--.+.|+.- +..| .|.+...+...+...
T Consensus 125 ~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlG-v~~g-~~~~~~~L~~~~~~~----- 197 (284)
T 3chv_A 125 ENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILRAIDMHGRGLLYGKLYVQFVMG-VKNA-MPADREVFDFYVRMM----- 197 (284)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEEEC-CTTS-CCCCHHHHHHHHHHH-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEe-cCCC-CCCCHHHHHHHHHhc-----
Confidence 36788888888888888755556676665432110001111 222234444444 4334 345566666666542
Q ss_pred CcCC---ceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005072 195 WLQK---LKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (715)
Q Consensus 195 ~l~~---~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (715)
..+ ..++|+|.|-.+++ ++. .=..+|+. +-+|+-|.
T Consensus 198 -p~~~~~~~ws~~g~Gr~q~p-~~~-------~A~~~GGh--vRVGlEDn 236 (284)
T 3chv_A 198 -RTRAPQAEWCAAGIGANQLT-VNE-------WAIAAGGH--TRTGLEDN 236 (284)
T ss_dssp -HHHCTTSEEEEEECTTHHHH-HHH-------HHHHTTCE--EEESTTTC
T ss_pred -cCCCCCceEEEEecCcchhH-HHH-------HHHHcCCC--eEEecccc
Confidence 123 67999999987764 222 22356776 34566554
No 122
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=22.39 E-value=4.2e+02 Score=26.59 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=42.5
Q ss_pred CceEEEEEeCCCch-HHHHHHHHHHHHHhhcCCceeEEecCCCcccchhHHHHhhcCCCeEEEEecCCCCCCCC-hhHHH
Q 005072 104 KQKVTIFFGTQTGT-AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAAR 181 (715)
Q Consensus 104 ~~~v~I~YgSqtGt-ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~ 181 (715)
..+|+|+-|.. +. -+..+..|++.|.+.+ ...|++.+-.....+...+.+.|.+++++|+ .+.| +..+ +-.+.
T Consensus 4 ~~kvLiv~G~~-~H~~~~~~~~l~~~l~~~g-~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~--~~~~-~~l~~~~~~~ 78 (281)
T 4e5v_A 4 PIKTLLITGQN-NHNWQVSHVVLKQILENSG-RFDVDFVISPEQGKDMSGFVLDFSPYQLVVL--DYNG-DSWPEETNRR 78 (281)
T ss_dssp CEEEEEEESCC-SSCHHHHHHHHHHHHHHTT-SEEEEEEECCCTTSCCTTCCCCCTTCSEEEE--CCCS-SCCCHHHHHH
T ss_pred ceEEEEEcCCC-CCChHHHHHHHHHHHHhcC-CEEEEEEeCCccccchhHHhhhhhcCCEEEE--eCCC-CcCCHHHHHH
Confidence 45788885543 44 5677778888887654 2445554321000000011135888998774 4433 3433 44556
Q ss_pred HHHHHHh
Q 005072 182 FYKWFTE 188 (715)
Q Consensus 182 F~~~L~~ 188 (715)
|.+++++
T Consensus 79 l~~yV~~ 85 (281)
T 4e5v_A 79 FLEYVQN 85 (281)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6677764
Done!