BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005073
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554
L + L+ LS+ G+ ++D V A N+ L L+ C ++F+L+ + +C RL
Sbjct: 114 LSQCSKLQNLSLEGLR-LSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNV 614
L+LS + F+++ + + E + +L+L+
Sbjct: 171 DELNLSWCFD-------------------------FTEKHVQVAVAHVSETITQLNLSGY 205
Query: 615 RKVADNTALS-LAKRSNKLVNLDLS 638
RK + LS L +R LV+LDLS
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLS 230
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFG 665
L+ LSL +R ++D +LAK SN LV L+LS C S+ AL ++ SC L L L
Sbjct: 120 LQNLSLEGLR-LSDPIVNTLAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
Query: 666 CSQIT 670
C T
Sbjct: 178 CFDFT 182
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554
L + L+ LS+ G+ ++D V A N+ L L+ C ++F+L+ + +C RL
Sbjct: 76 LSQCSKLQNLSLEGLR-LSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNV 614
L+LS + F+++ + + E + +L+L+
Sbjct: 133 DELNLSWCFD-------------------------FTEKHVQVAVAHVSETITQLNLSGY 167
Query: 615 RKVADNTALS-LAKRSNKLVNLDLS 638
RK + LS L +R LV+LDLS
Sbjct: 168 RKNLQKSDLSTLVRRCPNLVHLDLS 192
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFG 665
L+ LSL +R ++D +LAK SN LV L+LS C S+ AL ++ SC L L L
Sbjct: 82 LQNLSLEGLR-LSDPIVNTLAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 139
Query: 666 CSQIT 670
C T
Sbjct: 140 CFDFT 144
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 514 DEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYL 573
D VR + C + LTD L I + P + + L + + +D G+
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEF 483
Query: 574 ANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLV 633
+ GC +Q L++ FS+ AIAA + T L+ L + R A T L + +
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLWVQGYR--ASMTGQDLMQMARPYW 540
Query: 634 NLDL 637
N++L
Sbjct: 541 NIEL 544
>pdb|2POF|A Chain A, Crystal Structure Of Cdp-Diacylglycerol Pyrophosphatase
pdb|2POF|B Chain B, Crystal Structure Of Cdp-Diacylglycerol Pyrophosphatase
Length = 227
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 288 SNSSILWIPRKGQRQGPKLIIPSLKELSMKILVQNADAITSLEHVPDALRHKLSFMLCDS 347
+N S W+P G +G + + + E LVQ + E VP+A H S+ L
Sbjct: 135 ANISSRWLPLPGGLRGHEYLARRVTESE---LVQRSPFXXLAEEVPEAREHXGSYGLAXV 191
Query: 348 RQMNSHFLNL 357
RQ ++ F+ L
Sbjct: 192 RQSDNSFVLL 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,030,414
Number of Sequences: 62578
Number of extensions: 725600
Number of successful extensions: 1598
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 16
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)