Query 005073
Match_columns 715
No_of_seqs 316 out of 2913
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 9E-26 2E-30 237.6 9.9 305 361-676 138-446 (483)
2 KOG4341 F-box protein containi 99.9 1.6E-25 3.4E-30 235.7 8.6 347 331-686 74-432 (483)
3 cd00116 LRR_RI Leucine-rich re 99.7 2E-14 4.4E-19 153.9 25.4 285 366-665 3-316 (319)
4 KOG2120 SCF ubiquitin ligase, 99.6 8E-16 1.7E-20 156.4 11.4 288 329-661 98-392 (419)
5 cd00116 LRR_RI Leucine-rich re 99.6 8.9E-13 1.9E-17 141.2 28.0 271 362-640 24-317 (319)
6 KOG1947 Leucine rich repeat pr 99.6 2.2E-14 4.7E-19 162.1 13.5 277 389-675 161-446 (482)
7 KOG1947 Leucine rich repeat pr 99.5 2.5E-14 5.5E-19 161.5 12.5 276 419-698 160-445 (482)
8 KOG2120 SCF ubiquitin ligase, 99.5 5.5E-14 1.2E-18 143.2 8.3 251 421-682 137-389 (419)
9 PLN00113 leucine-rich repeat r 99.4 1.3E-12 2.8E-17 161.2 12.8 252 417-688 161-412 (968)
10 PLN00113 leucine-rich repeat r 99.4 2E-12 4.3E-17 159.6 13.2 308 361-701 93-414 (968)
11 PLN03210 Resistant to P. syrin 99.4 2.6E-12 5.7E-17 160.4 12.8 254 417-700 631-913 (1153)
12 KOG1909 Ran GTPase-activating 99.3 6.7E-11 1.5E-15 123.6 15.3 257 389-655 30-324 (382)
13 PLN03210 Resistant to P. syrin 99.2 3E-11 6.4E-16 151.0 10.9 280 361-674 611-911 (1153)
14 KOG1909 Ran GTPase-activating 99.2 6.8E-10 1.5E-14 116.2 17.1 189 474-667 93-309 (382)
15 KOG4194 Membrane glycoprotein 99.2 4.6E-12 9.9E-17 139.0 0.4 295 361-704 125-429 (873)
16 KOG4194 Membrane glycoprotein 98.9 3.3E-10 7.2E-15 124.6 0.5 135 551-697 268-408 (873)
17 KOG0444 Cytoskeletal regulator 98.8 1.6E-10 3.5E-15 127.4 -5.4 219 389-639 103-325 (1255)
18 KOG3207 Beta-tubulin folding c 98.8 3.6E-09 7.9E-14 113.5 4.1 212 417-665 118-335 (505)
19 KOG3207 Beta-tubulin folding c 98.7 3.9E-09 8.6E-14 113.2 1.4 164 495-666 142-311 (505)
20 KOG3665 ZYG-1-like serine/thre 98.6 8.4E-08 1.8E-12 112.8 8.8 169 446-640 60-230 (699)
21 KOG3665 ZYG-1-like serine/thre 98.5 8.3E-07 1.8E-11 104.5 14.6 262 308-584 2-281 (699)
22 KOG0444 Cytoskeletal regulator 98.5 2.3E-09 5.1E-14 118.5 -7.1 39 654-693 337-375 (1255)
23 PRK15387 E3 ubiquitin-protein 98.4 2.2E-07 4.7E-12 110.0 3.8 239 361-672 222-460 (788)
24 PRK15387 E3 ubiquitin-protein 98.2 6.2E-07 1.3E-11 106.2 3.8 223 361-651 242-465 (788)
25 COG5238 RNA1 Ran GTPase-activa 98.2 2.3E-05 5E-10 80.1 13.5 200 389-596 30-260 (388)
26 KOG0618 Serine/threonine phosp 98.1 6.7E-07 1.5E-11 103.9 -0.7 225 420-668 241-488 (1081)
27 KOG3864 Uncharacterized conser 98.1 1.9E-06 4.2E-11 84.6 2.4 105 580-687 103-211 (221)
28 KOG1259 Nischarin, modulator o 98.0 2E-06 4.3E-11 88.7 0.6 234 377-641 172-410 (490)
29 COG5238 RNA1 Ran GTPase-activa 97.9 0.00019 4.1E-09 73.6 14.0 36 419-455 29-67 (388)
30 PRK15370 E3 ubiquitin-protein 97.9 1E-05 2.2E-10 96.3 5.6 225 389-666 199-425 (754)
31 KOG2982 Uncharacterized conser 97.9 1.2E-05 2.5E-10 83.2 4.8 231 391-638 47-287 (418)
32 KOG2982 Uncharacterized conser 97.9 6.3E-06 1.4E-10 85.1 2.6 210 447-668 46-261 (418)
33 PRK15370 E3 ubiquitin-protein 97.8 2.6E-05 5.6E-10 92.9 6.9 235 361-651 199-435 (754)
34 KOG0618 Serine/threonine phosp 97.8 4.2E-06 9E-11 97.5 -0.5 126 474-615 360-487 (1081)
35 PF14580 LRR_9: Leucine-rich r 97.7 2.5E-05 5.5E-10 76.7 4.3 128 389-533 19-147 (175)
36 PF14580 LRR_9: Leucine-rich r 97.6 2.2E-05 4.7E-10 77.1 1.6 14 577-590 112-125 (175)
37 KOG4658 Apoptotic ATPase [Sign 97.6 6.3E-05 1.4E-09 91.1 5.8 15 629-643 769-783 (889)
38 KOG4237 Extracellular matrix p 97.5 1.5E-05 3.3E-10 85.2 -2.0 88 572-665 268-355 (498)
39 KOG3864 Uncharacterized conser 97.3 0.00031 6.8E-09 69.3 4.8 47 527-573 126-172 (221)
40 KOG4658 Apoptotic ATPase [Sign 97.2 0.00025 5.4E-09 86.0 4.6 235 417-674 542-788 (889)
41 KOG1259 Nischarin, modulator o 97.1 0.00012 2.7E-09 75.7 0.5 208 436-667 172-410 (490)
42 KOG4308 LRR-containing protein 96.8 0.00088 1.9E-08 76.1 3.2 70 528-599 235-311 (478)
43 KOG4237 Extracellular matrix p 96.6 0.00056 1.2E-08 73.5 0.4 255 389-673 67-338 (498)
44 KOG1859 Leucine-rich repeat pr 96.6 0.00031 6.8E-09 80.3 -2.0 105 551-667 186-290 (1096)
45 PRK15386 type III secretion pr 96.4 0.0093 2E-07 65.9 8.3 161 473-672 52-216 (426)
46 KOG4308 LRR-containing protein 96.4 0.0038 8.3E-08 70.9 5.1 216 422-643 89-331 (478)
47 KOG0472 Leucine-rich repeat pr 96.3 0.00062 1.3E-08 73.3 -1.6 102 550-667 433-539 (565)
48 KOG1859 Leucine-rich repeat pr 96.2 0.0013 2.7E-08 75.6 -0.2 205 378-615 75-290 (1096)
49 smart00367 LRR_CC Leucine-rich 95.9 0.0083 1.8E-07 39.5 2.9 24 629-652 1-24 (26)
50 PRK15386 type III secretion pr 95.8 0.015 3.3E-07 64.3 6.0 135 361-536 52-187 (426)
51 KOG0472 Leucine-rich repeat pr 95.7 0.021 4.6E-07 61.8 6.7 172 496-702 359-539 (565)
52 KOG2739 Leucine-rich acidic nu 95.4 0.0037 8E-08 64.2 -0.4 64 445-510 64-127 (260)
53 smart00367 LRR_CC Leucine-rich 95.4 0.016 3.5E-07 38.1 2.8 24 551-574 1-24 (26)
54 KOG2123 Uncharacterized conser 95.3 0.007 1.5E-07 62.6 1.4 113 526-650 19-134 (388)
55 PF13855 LRR_8: Leucine rich r 94.9 0.0042 9.2E-08 49.7 -1.4 60 526-589 1-60 (61)
56 KOG2123 Uncharacterized conser 94.6 0.0094 2E-07 61.7 0.0 103 388-505 18-123 (388)
57 KOG2739 Leucine-rich acidic nu 94.4 0.0076 1.7E-07 61.9 -1.1 36 526-561 65-100 (260)
58 KOG0617 Ras suppressor protein 93.4 0.0028 6.1E-08 61.1 -5.9 125 389-536 56-183 (264)
59 PLN03150 hypothetical protein; 92.7 0.19 4.2E-06 59.4 6.4 81 475-562 420-500 (623)
60 PF13855 LRR_8: Leucine rich r 92.6 0.042 9.1E-07 43.8 0.6 11 526-536 49-59 (61)
61 PLN03150 hypothetical protein; 92.6 0.19 4E-06 59.6 6.1 62 526-591 442-503 (623)
62 PF12799 LRR_4: Leucine Rich r 92.5 0.15 3.2E-06 38.2 3.2 16 576-591 22-37 (44)
63 KOG0617 Ras suppressor protein 92.3 0.0031 6.6E-08 60.9 -7.5 31 473-506 56-86 (264)
64 COG4886 Leucine-rich repeat (L 89.8 0.2 4.4E-06 55.5 2.6 170 446-640 116-287 (394)
65 KOG1644 U2-associated snRNP A' 89.0 0.29 6.3E-06 48.9 2.6 106 473-590 42-152 (233)
66 COG4886 Leucine-rich repeat (L 88.8 0.4 8.6E-06 53.2 4.0 173 389-590 116-289 (394)
67 PF12799 LRR_4: Leucine Rich r 88.3 0.45 9.7E-06 35.5 2.7 38 630-671 1-38 (44)
68 PF13516 LRR_6: Leucine Rich r 87.9 0.37 7.9E-06 30.8 1.7 23 629-652 1-23 (24)
69 PF13516 LRR_6: Leucine Rich r 87.0 0.47 1E-05 30.3 1.8 20 578-597 2-21 (24)
70 KOG0531 Protein phosphatase 1, 84.1 0.15 3.3E-06 57.2 -2.6 14 577-590 254-267 (414)
71 KOG1644 U2-associated snRNP A' 79.1 0.87 1.9E-05 45.6 1.0 38 417-456 61-98 (233)
72 KOG0531 Protein phosphatase 1, 77.5 0.69 1.5E-05 51.9 -0.2 102 526-641 95-197 (414)
73 KOG3763 mRNA export factor TAP 75.4 4.8 0.0001 46.0 5.6 36 526-561 218-253 (585)
74 smart00368 LRR_RI Leucine rich 75.0 4.4 9.5E-05 27.0 3.3 23 578-600 2-24 (28)
75 KOG4579 Leucine-rich repeat (L 74.3 1.7 3.7E-05 41.1 1.5 13 577-589 99-111 (177)
76 smart00368 LRR_RI Leucine rich 74.3 4 8.6E-05 27.2 2.9 24 630-654 2-25 (28)
77 KOG4579 Leucine-rich repeat (L 64.0 2.6 5.6E-05 39.9 0.4 107 475-590 29-135 (177)
78 KOG3763 mRNA export factor TAP 57.9 16 0.00034 42.0 5.2 74 412-488 210-285 (585)
79 PF13504 LRR_7: Leucine rich r 56.8 7.6 0.00017 22.8 1.4 10 657-666 2-11 (17)
80 cd03742 SOCS_Rab40 SOCS (suppr 54.4 24 0.00053 26.3 4.0 35 307-342 2-38 (43)
81 cd03737 SOCS_SOCS3 SOCS (suppr 47.0 39 0.00085 25.1 4.1 33 307-339 2-34 (42)
82 KOG0532 Leucine-rich repeat (L 42.0 6.9 0.00015 45.0 -0.7 126 416-561 117-243 (722)
83 KOG0532 Leucine-rich repeat (L 39.1 5.8 0.00013 45.6 -1.8 158 526-703 121-283 (722)
84 cd03735 SOCS_SOCS1 SOCS (suppr 39.1 75 0.0016 23.8 4.6 34 307-341 2-37 (43)
85 cd03717 SOCS_SOCS_like SOCS (s 34.9 93 0.002 22.5 4.5 33 307-340 2-36 (39)
86 KOG4242 Predicted myosin-I-bin 34.1 63 0.0014 36.6 5.1 89 579-672 355-455 (553)
87 cd03734 SOCS_CIS1 SOCS (suppre 32.9 1.1E+02 0.0025 22.5 4.7 34 307-341 2-35 (41)
88 cd03736 SOCS_SOCS2 SOCS (suppr 32.5 1.2E+02 0.0026 22.3 4.8 34 307-341 2-35 (41)
89 PF00560 LRR_1: Leucine Rich R 31.9 26 0.00056 21.8 1.0 13 657-670 1-13 (22)
90 PF07723 LRR_2: Leucine Rich R 29.5 41 0.00089 22.1 1.7 25 632-656 2-26 (26)
91 PF07735 FBA_2: F-box associat 25.8 3.4E+02 0.0074 21.7 7.1 59 360-427 10-69 (70)
92 PRK13042 superantigen-like pro 25.1 99 0.0021 32.6 4.4 45 10-55 46-94 (291)
93 KOG3735 Tropomodulin and leiom 23.4 2.2E+02 0.0047 31.1 6.6 74 525-599 197-276 (353)
94 smart00253 SOCS suppressors of 21.0 2.4E+02 0.0052 20.9 4.7 34 306-340 5-40 (43)
95 cd03587 SOCS SOCS (suppressors 20.8 1.9E+02 0.0042 21.0 4.1 32 308-340 2-38 (41)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=9e-26 Score=237.57 Aligned_cols=305 Identities=24% Similarity=0.396 Sum_probs=221.4
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.+++|.+++|..+.+..+......| |++++|+|.+|.. ++|.. +..+...|++|++|.|..|..+++..+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~C--pnIehL~l~gc~~-iTd~s----~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNC--PNIEHLALYGCKK-ITDSS----LLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhC--Cchhhhhhhccee-ccHHH----HHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 34677777777777777777777777 7777777777774 66543 34556667777777777777777777777
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+...|++|++|+++.|..+...++..+...+ ..++.+.+.+|...+...+...-..+.-+-.+++..|..++|..+..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~-~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGC-KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccc-hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 7777777777777777777777777776665 447777666776666554444445555566666667777887777665
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC-CHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF-SDEAIAAFL 599 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i-sd~~l~~Ll 599 (715)
...+ ..|+.|..++|..+++..+..+.++|++|+.|-+..|.++++.|+..++.+|+.|+.+++..+.. .+..+..+.
T Consensus 290 ~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 290 ACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 5443 67888888888888888888888888888888888888888888888888888888888877643 333344443
Q ss_pred HhCCCCccEEEeCCCCCCCHHHHHHHHh---cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC
Q 005073 600 ETAGEPLKELSLNNVRKVADNTALSLAK---RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG 676 (715)
Q Consensus 600 ~~~~~~L~~L~L~~c~~I~d~~l~~L~~---~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~ 676 (715)
.+++.|+.|.|+.|..|+|+++..+.. ....|+.|.+++|+.+++..+..+. .|++|+.+++.+|..++..++..
T Consensus 369 -~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 369 -RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred -cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHH
Confidence 345788888888888888887666543 3457888888888888888777775 58888888888888888777654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=235.74 Aligned_cols=347 Identities=26% Similarity=0.331 Sum_probs=279.3
Q ss_pred CCCHHHHHHHHHHH-----hcCCCCChhhHHhhhC-CCccEEEEcCCC-CCCHHHHHHHHhhCCCCCeeEEEEccCCCCC
Q 005073 331 HVPDALRHKLSFML-----CDSRQMNSHFLNLLFS-GSPTEIRLRDCS-WLTEQEFTKAFVSCDTKNLTVLQLDRCGRCM 403 (715)
Q Consensus 331 ~lp~~~~~kL~~il-----~~~~~l~~~~l~l~~~-~~L~~L~L~~c~-~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l 403 (715)
.+|.++..+++.++ +.+.....-|-...+. .+-+++++.... .+....+..+...|+ ..|+.|.|.+|.. +
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcg-g~lk~LSlrG~r~-v 151 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCG-GFLKELSLRGCRA-V 151 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhc-ccccccccccccc-C
Confidence 46666666666543 2222223322222222 344667766553 245555667888886 6899999999986 5
Q ss_pred ChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCC
Q 005073 404 PDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDC 483 (715)
Q Consensus 404 ~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c 483 (715)
.+. .+-.+..+||++++|.+.+|.++++..+..+...|++|++|++..|..+++..+..+++.| ++|+.|++++|
T Consensus 152 ~~s----slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc 226 (483)
T KOG4341|consen 152 GDS----SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWC 226 (483)
T ss_pred Ccc----hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccC
Confidence 554 3456678899999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred CCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCC
Q 005073 484 QSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (715)
Q Consensus 484 ~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~ 563 (715)
..+...++......++.|+.+.+.||....++.+..+.. .++-+..+++..|..+||..+..+...|..|+.|..++|.
T Consensus 227 ~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~-~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t 305 (483)
T KOG4341|consen 227 PQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA-YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT 305 (483)
T ss_pred chhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc-cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC
Confidence 988887777778888889999888998888877765443 3367888888899899999999999999999999999999
Q ss_pred CCChHHHHHHHhcCCCccEEEccCC-CCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCC
Q 005073 564 KLTDFGIGYLANGCQAIQTLKLCRN-AFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRN 642 (715)
Q Consensus 564 ~ltd~gl~~l~~~~~~Lk~L~Ls~~-~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~ 642 (715)
.+++..+..+.++|++|+.|-|..| ++++.++..+... ++.|+.+++..|..++|..+..++.+|+.|+.|.+++|..
T Consensus 306 ~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn-~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 306 DITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN-CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred CCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC-ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 9999999999999999999999987 6888888877654 5899999999999999888999999999999999999999
Q ss_pred CCHHHHHHHHh---cCCCccEEEEecCCCCCcccccCC-CCCCeeEEe
Q 005073 643 LSDEALGLIVD---SCLSLRMLKLFGCSQITNAFLDGH-SNPDVQIIG 686 (715)
Q Consensus 643 Ltd~~l~~L~~---~~~~L~~L~L~gC~~lt~~~l~~~-~~~~L~~l~ 686 (715)
|||+|+..+.. +...|..|++.+|+.+++..+... .|+.|+.+.
T Consensus 385 itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 385 ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 99998877654 457899999999999999888754 555555543
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=2e-14 Score=153.89 Aligned_cols=285 Identities=26% Similarity=0.288 Sum_probs=166.1
Q ss_pred EEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCC--HHHHHH---
Q 005073 366 IRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRIS--DVGFKA--- 440 (715)
Q Consensus 366 L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~ls--d~~l~~--- 440 (715)
|+|..+. ++......++... ++|+.|+|++|. +++.... .+......++.|++|+++++. ++ ...+..
T Consensus 3 l~L~~~~-l~~~~~~~~~~~l--~~L~~l~l~~~~--l~~~~~~-~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~ 75 (319)
T cd00116 3 LSLKGEL-LKTERATELLPKL--LCLQVLRLEGNT--LGEEAAK-ALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQ 75 (319)
T ss_pred cccccCc-ccccchHHHHHHH--hhccEEeecCCC--CcHHHHH-HHHHHHhhCCCceEEeccccc-cCCcchHHHHHHH
Confidence 4443333 4444444455444 568888888776 4443322 344455667778888887743 33 233322
Q ss_pred HHhhCCCCCEEeeccCCCCC--hHHHHHHHHHhcCCceEEEecCCCCchhh--hhHHHhhcC-CCCCEEeecCccccCHH
Q 005073 441 LVTSAPALRSINLSQCSLLS--STSVDILADKLGSFIQELYINDCQSLNAM--LILPALRKL-KHLEVLSVAGIETVTDE 515 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~--~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~--~l~~~L~~l-~~Le~L~Ls~~~~isd~ 515 (715)
.+..+++|+.|+|++|.... ...+..+... ++|++|++++|...... .+...+..+ ++|+.|++.+|. ++..
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 152 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRS--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGA 152 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhcc--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCch
Confidence 23446788888888764321 2223333222 34888888877533211 123345566 778888887764 4422
Q ss_pred HHHH---HHHhcCCCccEEEecCCCCCChHHHHHHHhc---CCCccEEEecCCCCCChHHHHHH---HhcCCCccEEEcc
Q 005073 516 FVRG---FVYACGHNMKELILTDCVKLTDFSLKVIAET---CPRLCTLDLSNLYKLTDFGIGYL---ANGCQAIQTLKLC 586 (715)
Q Consensus 516 ~l~~---ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~---~p~L~~L~Ls~c~~ltd~gl~~l---~~~~~~Lk~L~Ls 586 (715)
.... .+..+ ++|+.|++++| .+++..+..+... +++|+.|++++| .+++.+...+ ...+++|+.|+++
T Consensus 153 ~~~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 153 SCEALAKALRAN-RDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHHHHhC-CCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecC
Confidence 2222 22222 57888888877 4776655554433 357888888876 6666655443 3456778888888
Q ss_pred CCCCCHHHHHHHHHhC---CCCccEEEeCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCHHHHHHHHhc---C-C
Q 005073 587 RNAFSDEAIAAFLETA---GEPLKELSLNNVRKVADNTALSLA---KRSNKLVNLDLSWCRNLSDEALGLIVDS---C-L 656 (715)
Q Consensus 587 ~~~isd~~l~~Ll~~~---~~~L~~L~L~~c~~I~d~~l~~L~---~~~~~L~~LdLs~C~~Ltd~~l~~L~~~---~-~ 656 (715)
+|.+++.++..+.... ...|++|++.+| .+++.+...++ ..+++|++|++++|. +++.+...++.- . +
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGN 307 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCC
Confidence 8888776666655443 257888888876 56655544443 345678888888854 777665555432 2 4
Q ss_pred CccEEEEec
Q 005073 657 SLRMLKLFG 665 (715)
Q Consensus 657 ~L~~L~L~g 665 (715)
.|+.|+|.+
T Consensus 308 ~~~~~~~~~ 316 (319)
T cd00116 308 ELESLWVKD 316 (319)
T ss_pred chhhcccCC
Confidence 666666654
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8e-16 Score=156.45 Aligned_cols=288 Identities=20% Similarity=0.282 Sum_probs=193.2
Q ss_pred CCCCCHHHHHHHHHHHhcCC-----CCChhhHHhhhCCCc-cEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCC
Q 005073 329 LEHVPDALRHKLSFMLCDSR-----QMNSHFLNLLFSGSP-TEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRC 402 (715)
Q Consensus 329 L~~lp~~~~~kL~~il~~~~-----~l~~~~l~l~~~~~L-~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~ 402 (715)
...+|++++..++..+++.. .+..+|........+ +.+++.+-. +.+..+..+... ....+.+....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~-i~p~~l~~l~~r----gV~v~Rlar~~-- 170 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN-IHPDVLGRLLSR----GVIVFRLARSF-- 170 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc-cChhHHHHHHhC----CeEEEEcchhh--
Confidence 45678888888877654422 223444444433333 466666654 777777777654 45556654321
Q ss_pred CChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecC
Q 005073 403 MPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYIND 482 (715)
Q Consensus 403 l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~ 482 (715)
+.+..+.. .+...-..|++|+|+. ..++...+..+.+.|.+|+.|.|.+ ..+.|.-...++++ .+|+.|+|+.
T Consensus 171 ~~~prlae---~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN--~~L~~lnlsm 243 (419)
T KOG2120|consen 171 MDQPRLAE---HFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN--SNLVRLNLSM 243 (419)
T ss_pred hcCchhhh---hhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc--ccceeecccc
Confidence 33332211 1111223689999998 6788888888899999999999998 56788778888887 7899999999
Q ss_pred CCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCC-CCChHHHHHHHhcCCCccEEEecC
Q 005073 483 CQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCV-KLTDFSLKVIAETCPRLCTLDLSN 561 (715)
Q Consensus 483 c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~-~Ltd~~L~~L~~~~p~L~~L~Ls~ 561 (715)
|.+++..++.-.+.+|+.|..|+|+.|....+. +..++....++|+.|+|++|. ++.+..+..+...||+|..|+|++
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 988888777777888888888888888655544 555555555778888887773 344455556666666666666666
Q ss_pred CCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 562 LYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 562 c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
|..+++..+ .++.+. +.|++|+|+.|..|....+..+ ...|.|.+|++.+|
T Consensus 323 ~v~l~~~~~-------------------------~~~~kf--~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~- 373 (419)
T KOG2120|consen 323 SVMLKNDCF-------------------------QEFFKF--NYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC- 373 (419)
T ss_pred ccccCchHH-------------------------HHHHhc--chheeeehhhhcCCChHHeeee-ccCcceEEEEeccc-
Confidence 665555333 333332 5777777777777776655444 34688999999987
Q ss_pred CCCHHHHHHHHhcCCCccEE
Q 005073 642 NLSDEALGLIVDSCLSLRML 661 (715)
Q Consensus 642 ~Ltd~~l~~L~~~~~~L~~L 661 (715)
++|..++.+-..|++|+.=
T Consensus 374 -vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 374 -VSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred -cCchHHHHHHHhCcccccc
Confidence 6677777777777877643
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=8.9e-13 Score=141.16 Aligned_cols=271 Identities=24% Similarity=0.226 Sum_probs=188.9
Q ss_pred CccEEEEcCCCCCCHHHHHHHHhhC-CCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC--CHHHH
Q 005073 362 SPTEIRLRDCSWLTEQEFTKAFVSC-DTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRI--SDVGF 438 (715)
Q Consensus 362 ~L~~L~L~~c~~L~~~~l~~l~~~c-~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~l--sd~~l 438 (715)
.+++|.+.+|. ++...+..+.... ..++|++|+++.+........+. .+......+++|++|+|++|... ....+
T Consensus 24 ~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 24 CLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQ-SLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHH-HHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 48899999998 7666555544332 22679999998875310022222 23344456899999999996543 22333
Q ss_pred HHHHhhCCCCCEEeeccCCCCChHHHHHHHHHh---cCCceEEEecCCCCchh--hhhHHHhhcCCCCCEEeecCccccC
Q 005073 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKL---GSFIQELYINDCQSLNA--MLILPALRKLKHLEVLSVAGIETVT 513 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~---~~~L~~L~Ls~c~~l~~--~~l~~~L~~l~~Le~L~Ls~~~~is 513 (715)
..+... ++|++|++++|. +++.++..+...+ +++|+.|++++|..... ..+...+..+++|++|++.++ .+.
T Consensus 102 ~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~ 178 (319)
T cd00116 102 ESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIG 178 (319)
T ss_pred HHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCc
Confidence 444444 669999999975 5555555544332 26899999999974422 224556778889999999986 566
Q ss_pred HHHHHHHHHh--cCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEEecCCCCCChHHHHHHHhcC----CCccEEE
Q 005073 514 DEFVRGFVYA--CGHNMKELILTDCVKLTDFSLKVIA---ETCPRLCTLDLSNLYKLTDFGIGYLANGC----QAIQTLK 584 (715)
Q Consensus 514 d~~l~~ll~~--~~~~L~~L~Ls~c~~Ltd~~L~~L~---~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~----~~Lk~L~ 584 (715)
+..+..+... ..++|+.|++++| .+++.....+. ..+++|+.|++++| .+++.++..++..+ +.|++|+
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEE
Confidence 5555544322 2269999999998 58777665544 35789999999996 78888888877654 7999999
Q ss_pred ccCCCCCHHHHHHHHHhC--CCCccEEEeCCCCCCCHHHHHHHHh---cC-CCccEEEecCC
Q 005073 585 LCRNAFSDEAIAAFLETA--GEPLKELSLNNVRKVADNTALSLAK---RS-NKLVNLDLSWC 640 (715)
Q Consensus 585 Ls~~~isd~~l~~Ll~~~--~~~L~~L~L~~c~~I~d~~l~~L~~---~~-~~L~~LdLs~C 640 (715)
+++|.+++.+...+.... .++|++|+++++ .+++.+...+++ .. +.|++|++.+.
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 999999887766554432 268999999996 788776555542 33 68999999874
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=162.12 Aligned_cols=277 Identities=30% Similarity=0.435 Sum_probs=148.5
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeecc-CCCCChHH--HH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQ-CSLLSSTS--VD 465 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~-c~~l~~~~--l~ 465 (715)
..++.+.+..+....... .+..+...++.|+.|.+.+|..+++.++..+...+++|+.|++++ |..++... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 236 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDK----ILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL 236 (482)
T ss_pred HHHheeeeecccccccHH----HHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh
Confidence 455555665554422222 223334446777777777776777666666666677777777766 22222222 22
Q ss_pred HHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHH
Q 005073 466 ILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLK 545 (715)
Q Consensus 466 ~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~ 545 (715)
.+...| ++|++|++++|..+++.++......+++|++|.+.+|..+++.++..+...+ ++|++|+|++|..+++..+.
T Consensus 237 ~~~~~~-~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~-~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 237 LLLSIC-RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC-PSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred hhhhhc-CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc-CcccEEeeecCccchHHHHH
Confidence 344444 6666666666665555554444444666666666556556666666655444 55666666666666666666
Q ss_pred HHHhcCCCccEEEecCC---CCCChHHHHHHHhcCC-CccEEEccCC-CCCHHHHHHHHHhCCCCcc-EEEeCCCCCCCH
Q 005073 546 VIAETCPRLCTLDLSNL---YKLTDFGIGYLANGCQ-AIQTLKLCRN-AFSDEAIAAFLETAGEPLK-ELSLNNVRKVAD 619 (715)
Q Consensus 546 ~L~~~~p~L~~L~Ls~c---~~ltd~gl~~l~~~~~-~Lk~L~Ls~~-~isd~~l~~Ll~~~~~~L~-~L~L~~c~~I~d 619 (715)
.+...|++|+.|.+..+ ..+++.++..+..... .+..+.+.++ .+++..+.... . .... .+.+.+|+.++
T Consensus 315 ~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~--~~~~~~~~l~gc~~l~- 390 (482)
T KOG1947|consen 315 ALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I--SDLGLELSLRGCPNLT- 390 (482)
T ss_pred HHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c--cCcchHHHhcCCcccc-
Confidence 66555665555444332 2344443333332221 2222222222 22222222211 1 1111 34455565555
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccccc
Q 005073 620 NTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLD 675 (715)
Q Consensus 620 ~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~ 675 (715)
..+......+..|+.|+++.|..+++..+......|..+..+.+.+|..++...+.
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 55544444444567777777777777777766655667777777777777666554
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.54 E-value=2.5e-14 Score=161.55 Aligned_cols=276 Identities=30% Similarity=0.419 Sum_probs=194.1
Q ss_pred CCCccEEEecCCC-CCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCC-CCchhhh--hHHH
Q 005073 419 LPSLTTLSICGAC-RISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDC-QSLNAML--ILPA 494 (715)
Q Consensus 419 l~~L~~L~Ls~c~-~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c-~~l~~~~--l~~~ 494 (715)
+..++.+.+..+. .+.......+...++.|+.|.+.+|..+++.++..++..+ ++|+.|++++| ....... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLL 238 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhh
Confidence 3455555555444 3445556666666888888888888888887777777765 78888888873 3222221 2335
Q ss_pred hhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLA 574 (715)
Q Consensus 495 L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~ 574 (715)
...+++|+.|+++.+..++|.++..+...| ++|+.|.+.+|..+++.++..++..|+.|++|+|++|..+++.++..++
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c-~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRC-PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhC-CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 667788888888888778888887776554 7888888888877888888888888888888888888888888888888
Q ss_pred hcCCCccEEEccCC----CCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHH
Q 005073 575 NGCQAIQTLKLCRN----AFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGL 650 (715)
Q Consensus 575 ~~~~~Lk~L~Ls~~----~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~ 650 (715)
..|++|+.|.+... .+++.++..+.......+..+.+.+|..+++..+.... .......+.+.+|+.++ .++..
T Consensus 318 ~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~ 395 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLEL 395 (482)
T ss_pred HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHH
Confidence 88888888776553 25555655554321126777777778777777766655 23333367778888887 77777
Q ss_pred HHhcCCCccEEEEecCCCCCcccccCCC--CCCeeEEecCCCCCCCeeec
Q 005073 651 IVDSCLSLRMLKLFGCSQITNAFLDGHS--NPDVQIIGLKMSPVLEHVKV 698 (715)
Q Consensus 651 L~~~~~~L~~L~L~gC~~lt~~~l~~~~--~~~L~~l~L~~cp~L~~L~l 698 (715)
....+..|+.|++..|..+++..+.... +..+..+.+..|+.+..-.+
T Consensus 396 ~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 396 RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 6666666888888888888888776543 44555555665666555544
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.5e-14 Score=143.20 Aligned_cols=251 Identities=21% Similarity=0.281 Sum_probs=162.3
Q ss_pred CccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCC
Q 005073 421 SLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKH 500 (715)
Q Consensus 421 ~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~ 500 (715)
.-+.|++.+ ..+....+..+.. .....+.+.. ..+.+..+...+..+.+.|++|+|++. .++...+...++.|.+
T Consensus 137 lW~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 137 LWQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred ceeeeccCC-CccChhHHHHHHh--CCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 446667766 4566666666554 3344444443 223333233333323356888888776 3566556677788888
Q ss_pred CCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 005073 501 LEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAI 580 (715)
Q Consensus 501 Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~L 580 (715)
|+.|.|.|. .++|.....+... .+|+.|+|+.|++++..++..+...|..|..|+|++|...++..-..+++--++|
T Consensus 212 Lk~lSlEg~-~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 212 LKNLSLEGL-RLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred hhhcccccc-ccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 888888775 4555555555433 6788888888888888888888888888888888888766666444445545678
Q ss_pred cEEEccCC--CCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCc
Q 005073 581 QTLKLCRN--AFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSL 658 (715)
Q Consensus 581 k~L~Ls~~--~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L 658 (715)
+.|+|+++ ++.+..+..+... +++|.+|+|+.|..+++..+..+ ..++.|++|.++.|-.|....+-.+ ...|.|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~r-cp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl 365 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLEL-NSKPSL 365 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHh-CCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeee-ccCcce
Confidence 88888875 4555555555554 47888888888887877444443 4578888888888877765555444 357888
Q ss_pred cEEEEecCCCCCcccccCCCCCCe
Q 005073 659 RMLKLFGCSQITNAFLDGHSNPDV 682 (715)
Q Consensus 659 ~~L~L~gC~~lt~~~l~~~~~~~L 682 (715)
.+|++.||-.-|...+....++.|
T Consensus 366 ~yLdv~g~vsdt~mel~~e~~~~l 389 (419)
T KOG2120|consen 366 VYLDVFGCVSDTTMELLKEMLSHL 389 (419)
T ss_pred EEEEeccccCchHHHHHHHhCccc
Confidence 888888875544444433334433
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=1.3e-12 Score=161.18 Aligned_cols=252 Identities=21% Similarity=0.158 Sum_probs=113.4
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|+.|+|+++.. ... +...+..+++|+.|++++|.... .....+... ++|+.|+|++|..... +...+.
T Consensus 161 ~~l~~L~~L~L~~n~l-~~~-~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l--~~L~~L~L~~n~l~~~--~p~~l~ 233 (968)
T PLN00113 161 GSFSSLKVLDLGGNVL-VGK-IPNSLTNLTSLEFLTLASNQLVG-QIPRELGQM--KSLKWIYLGYNNLSGE--IPYEIG 233 (968)
T ss_pred hcCCCCCEEECccCcc-ccc-CChhhhhCcCCCeeeccCCCCcC-cCChHHcCc--CCccEEECcCCccCCc--CChhHh
Confidence 4555666666655322 111 11112345566666666553211 111111111 4566666666542211 233455
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
.+++|++|+++++. +... +...+.. .++|+.|+|++|. +++.....+. .+++|+.|+|++| .++.. +......
T Consensus 234 ~l~~L~~L~L~~n~-l~~~-~p~~l~~-l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~ 306 (968)
T PLN00113 234 GLTSLNHLDLVYNN-LTGP-IPSSLGN-LKNLQYLFLYQNK-LSGPIPPSIF-SLQKLISLDLSDN-SLSGE-IPELVIQ 306 (968)
T ss_pred cCCCCCEEECcCce-eccc-cChhHhC-CCCCCEEECcCCe-eeccCchhHh-hccCcCEEECcCC-eeccC-CChhHcC
Confidence 66666666666542 2111 1111111 2566666666652 3322222222 3566666666664 33221 1222234
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCL 656 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~ 656 (715)
+++|+.|++++|.+.......+. ..++|+.|+|.+|. ++.. +......+++|+.|++++|. ++......+ ..++
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~~-~~~~ 380 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTNN-LTGEIPEGL-CSSG 380 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCCe-eEeeCChhH-hCcC
Confidence 56666777666655432211121 12567777776653 2211 11122345667777777653 433222222 2456
Q ss_pred CccEEEEecCCCCCcccccCCCCCCeeEEecC
Q 005073 657 SLRMLKLFGCSQITNAFLDGHSNPDVQIIGLK 688 (715)
Q Consensus 657 ~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~ 688 (715)
+|+.|++++|.-.....-....+++|+.+.+.
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 67777777654222222112245666666543
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=2e-12 Score=159.56 Aligned_cols=308 Identities=19% Similarity=0.134 Sum_probs=151.8
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|+|.++. +....-..++..+ ++|++|+|+++.. ... ++ ...+++|++|+|+++. ++.. +..
T Consensus 93 ~~L~~L~Ls~n~-~~~~ip~~~~~~l--~~L~~L~Ls~n~l--~~~-----~p--~~~l~~L~~L~Ls~n~-~~~~-~p~ 158 (968)
T PLN00113 93 PYIQTINLSNNQ-LSGPIPDDIFTTS--SSLRYLNLSNNNF--TGS-----IP--RGSIPNLETLDLSNNM-LSGE-IPN 158 (968)
T ss_pred CCCCEEECCCCc-cCCcCChHHhccC--CCCCEEECcCCcc--ccc-----cC--ccccCCCCEEECcCCc-cccc-CCh
Confidence 455666666554 2111111122233 5666666665542 110 00 1345666666666642 2211 111
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
.+..+++|+.|+|++|.... .....+... ++|+.|++++|..... +...+..+++|+.|++.++. +.... ...
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l--~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~-p~~ 231 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVG-KIPNSLTNL--TSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNN-LSGEI-PYE 231 (968)
T ss_pred HHhcCCCCCEEECccCcccc-cCChhhhhC--cCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCc-cCCcC-Chh
Confidence 23456677777776653211 111112221 5677777776653221 23446667777777776553 22111 111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
+. ..++|+.|++++|. ++......+. .+++|+.|+|++| .++......+ ..+++|+.|+|++|.+....-..+ .
T Consensus 232 l~-~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~-~ 305 (968)
T PLN00113 232 IG-GLTSLNHLDLVYNN-LTGPIPSSLG-NLKNLQYLFLYQN-KLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV-I 305 (968)
T ss_pred Hh-cCCCCCEEECcCce-eccccChhHh-CCCCCCEEECcCC-eeeccCchhH-hhccCcCEEECcCCeeccCCChhH-c
Confidence 11 22677777777763 4433223333 3677777777765 3332111122 235677777777776543211111 1
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCC
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSN 679 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~ 679 (715)
..++|+.|+|.++. ++.. +......+++|+.|++++|. ++......+ ..+++|+.|++++|. ++...... ...
T Consensus 306 -~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~~~~L~~L~Ls~n~-l~~~~p~~~~~~ 379 (968)
T PLN00113 306 -QLQNLEILHLFSNN-FTGK-IPVALTSLPRLQVLQLWSNK-FSGEIPKNL-GKHNNLTVLDLSTNN-LTGEIPEGLCSS 379 (968)
T ss_pred -CCCCCcEEECCCCc-cCCc-CChhHhcCCCCCEEECcCCC-CcCcCChHH-hCCCCCcEEECCCCe-eEeeCChhHhCc
Confidence 22677777777753 2211 11222356788888888764 443322333 357788888887764 33222111 133
Q ss_pred CCeeEEec-------------CCCCCCCeeecCCC
Q 005073 680 PDVQIIGL-------------KMSPVLEHVKVPDF 701 (715)
Q Consensus 680 ~~L~~l~L-------------~~cp~L~~L~l~~~ 701 (715)
+.|+.+.+ ..++.|+.|.+.++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 44554443 24667788877665
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=2.6e-12 Score=160.39 Aligned_cols=254 Identities=18% Similarity=0.311 Sum_probs=136.5
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|+.|+|+++..+.... . +..+++|+.|+|.+|..+..-. ..+.. + ++|+.|++++|..+... .. ..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~lp-~si~~-L-~~L~~L~L~~c~~L~~L--p~-~i 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVELP-SSIQY-L-NKLEDLDMSRCENLEIL--PT-GI 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccccc-hhhhc-c-CCCCEEeCCCCCCcCcc--CC-cC
Confidence 456667777776654433211 1 2345677777777665443211 11111 1 56777777776554432 11 11
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHH----------------------------HHHH
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSL----------------------------KVIA 548 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L----------------------------~~L~ 548 (715)
++++|+.|++++|..+.. +. ....+|+.|+|+++. ++.... ....
T Consensus 702 ~l~sL~~L~Lsgc~~L~~--~p----~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS--FP----DISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCCCCEEeCCCCCCccc--cc----cccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhh
Confidence 466667777666643311 11 112455566655542 211000 0001
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCC-CCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHh
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNA-FSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAK 627 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~-isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~ 627 (715)
..+++|+.|+|++|..+... ......+++|+.|+|++|. +.. +...+ ..++|+.|+|++|..+.. +..
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~--LP~~~--~L~sL~~L~Ls~c~~L~~-----~p~ 843 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLET--LPTGI--NLESLESLDLSGCSRLRT-----FPD 843 (1153)
T ss_pred hccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCe--eCCCC--CccccCEEECCCCCcccc-----ccc
Confidence 12345666666665443321 1123346667777776652 221 10000 125677777777765532 122
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCCCCCCCeeecCC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSPVLEHVKVPD 700 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp~L~~L~l~~ 700 (715)
..++|+.|+|+++ .++. +..-...+++|+.|+|.+|++++........++.|+.+.+..|+.|+.+.+..
T Consensus 844 ~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred cccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 2356777777774 3542 22223468899999999999999877766678889999999999998776644
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=6.7e-11 Score=123.57 Aligned_cols=257 Identities=22% Similarity=0.275 Sum_probs=121.5
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC--CCCHHHH---H---HHHhhCCCCCEEeeccCCCCC
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC--RISDVGF---K---ALVTSAPALRSINLSQCSLLS 460 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~--~lsd~~l---~---~L~~~~p~L~~L~Ls~c~~l~ 460 (715)
..++.|+|++.. +... ...++...+...++|+..+++.-+ ++.+.-. . .-+..||.|++|+|+.+. +.
T Consensus 30 ~s~~~l~lsgnt--~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNT--FGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FG 105 (382)
T ss_pred CceEEEeccCCc--hhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cC
Confidence 567777777755 3332 234555666666777777776532 1222111 1 112346677777777753 33
Q ss_pred h---HHHHHHHHHhcCCceEEEecCCCCchhhh--hH---------HHhhcCCCCCEEeecCccc--cCHHHHHHHHHhc
Q 005073 461 S---TSVDILADKLGSFIQELYINDCQSLNAML--IL---------PALRKLKHLEVLSVAGIET--VTDEFVRGFVYAC 524 (715)
Q Consensus 461 ~---~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~--l~---------~~L~~l~~Le~L~Ls~~~~--isd~~l~~ll~~~ 524 (715)
. .++..+..+| ..|++|+|.+|..-...+ +. ..+..-+.|+++...++.. -....+...+..+
T Consensus 106 ~~g~~~l~~ll~s~-~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSC-TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhc-cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 2 3344444444 667777777775332221 11 1122334555555543211 1112222333333
Q ss_pred CCCccEEEecCCCCCChHHHHHH---HhcCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEEccCCCCCHHHHHHH
Q 005073 525 GHNMKELILTDCVKLTDFSLKVI---AETCPRLCTLDLSNLYKLTDFGIGYLA---NGCQAIQTLKLCRNAFSDEAIAAF 598 (715)
Q Consensus 525 ~~~L~~L~Ls~c~~Ltd~~L~~L---~~~~p~L~~L~Ls~c~~ltd~gl~~l~---~~~~~Lk~L~Ls~~~isd~~l~~L 598 (715)
+.|+.+.+..+ .|...++..+ ..+||+|+.|+|.+ +.++..|-.+++ ..+++|+.|++++|.+.+.|..++
T Consensus 185 -~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 -PTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred -cccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 55666666555 2333332111 22456666666655 344444433333 233455555555555555444444
Q ss_pred HHh---CCCCccEEEeCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCC--CHHHHHHHHhcC
Q 005073 599 LET---AGEPLKELSLNNVRKVADNTALSLA---KRSNKLVNLDLSWCRNL--SDEALGLIVDSC 655 (715)
Q Consensus 599 l~~---~~~~L~~L~L~~c~~I~d~~l~~L~---~~~~~L~~LdLs~C~~L--td~~l~~L~~~~ 655 (715)
+.. ..++|+.|.|.+| .|+.++...++ ...|.|+.|+|++|+ + .+.++..+...+
T Consensus 262 ~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIASKF 324 (382)
T ss_pred HHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHHhc
Confidence 322 2345555555554 44444333332 123555555555544 4 444555554433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=3e-11 Score=151.00 Aligned_cols=280 Identities=16% Similarity=0.288 Sum_probs=150.1
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
.++.+|++.++. +.. +..-... +++|+.|+|+.+.. +.. ++. ...+++|+.|+|.+|..+.. +..
T Consensus 611 ~~L~~L~L~~s~-l~~--L~~~~~~--l~~Lk~L~Ls~~~~-l~~------ip~-ls~l~~Le~L~L~~c~~L~~--lp~ 675 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEK--LWDGVHS--LTGLRNIDLRGSKN-LKE------IPD-LSMATNLETLKLSDCSSLVE--LPS 675 (1153)
T ss_pred cCCcEEECcCcc-ccc--ccccccc--CCCCCEEECCCCCC-cCc------CCc-cccCCcccEEEecCCCCccc--cch
Confidence 455666666654 221 1111112 26677777766543 111 011 24456666666666654432 122
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhh-----------------hHHHhhcCCCCCE
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAML-----------------ILPALRKLKHLEV 503 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~-----------------l~~~L~~l~~Le~ 503 (715)
-+..+++|+.|++++|..+..-... + .+ ++|+.|+|++|..+.... -++....+++|..
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~-i--~l-~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTG-I--NL-KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCc-C--CC-CCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccccc
Confidence 2345566666666666543321110 0 11 456666666654332210 0000112344555
Q ss_pred EeecCcccc--CH--HHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 005073 504 LSVAGIETV--TD--EFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQA 579 (715)
Q Consensus 504 L~Ls~~~~i--sd--~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~ 579 (715)
|.+.++... .. ..+..+....+++|+.|+|++|..+.... ..+ ..+++|+.|+|.+|..+... .... .+++
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si-~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~s 826 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSI-QNLHKLEHLEIENCINLETL--PTGI-NLES 826 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhh-hCCCCCCEEECCCCCCcCee--CCCC-Cccc
Confidence 554432110 00 00001111233689999999986544321 223 35899999999999876542 1111 4788
Q ss_pred ccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCcc
Q 005073 580 IQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLR 659 (715)
Q Consensus 580 Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~ 659 (715)
|+.|+|++|..-. .+.. ...+|+.|+|+++ .++. ++.-...+++|+.|+|++|++++.- ......+++|+
T Consensus 827 L~~L~Ls~c~~L~-~~p~----~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~ 896 (1153)
T PLN03210 827 LESLDLSGCSRLR-TFPD----ISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKLKHLE 896 (1153)
T ss_pred cCEEECCCCCccc-cccc----cccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCcc--CcccccccCCC
Confidence 9999999873211 0111 1268999999885 4542 2223356899999999999888642 22234688999
Q ss_pred EEEEecCCCCCcccc
Q 005073 660 MLKLFGCSQITNAFL 674 (715)
Q Consensus 660 ~L~L~gC~~lt~~~l 674 (715)
.|++++|..++...+
T Consensus 897 ~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 897 TVDFSDCGALTEASW 911 (1153)
T ss_pred eeecCCCcccccccC
Confidence 999999998876544
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=6.8e-10 Score=116.15 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=90.7
Q ss_pred CceEEEecCCCCchh--hhhHHHhhcCCCCCEEeecCccccCHHHHHHHHH-----------hcCCCccEEEecCCCCCC
Q 005073 474 FIQELYINDCQSLNA--MLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY-----------ACGHNMKELILTDCVKLT 540 (715)
Q Consensus 474 ~L~~L~Ls~c~~l~~--~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~-----------~~~~~L~~L~Ls~c~~Lt 540 (715)
+|+.|+|++|..-.. ..+...++++..|++|+|.+| .+...+-..+.. ...++|+.++.++| .+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccc
Confidence 566666666542221 123444555666666666555 233222111100 11245666666655 343
Q ss_pred hHHHHH---HHhcCCCccEEEecCCCCCChHHHHHH---HhcCCCccEEEccCCCCCHHHHHHHHHhC--CCCccEEEeC
Q 005073 541 DFSLKV---IAETCPRLCTLDLSNLYKLTDFGIGYL---ANGCQAIQTLKLCRNAFSDEAIAAFLETA--GEPLKELSLN 612 (715)
Q Consensus 541 d~~L~~---L~~~~p~L~~L~Ls~c~~ltd~gl~~l---~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~--~~~L~~L~L~ 612 (715)
+.+... ..+.+|.|+.+.+.. +.|...|+..+ +.+|++|+.|+|..|-++..+-.++.... -+.|++|+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 333322 233445666666655 34444444222 24456666666666655555444443322 1456666666
Q ss_pred CCCCCCHHHHHHHH----hcCCCccEEEecCCCCCCHHHHHHHHh---cCCCccEEEEecCC
Q 005073 613 NVRKVADNTALSLA----KRSNKLVNLDLSWCRNLSDEALGLIVD---SCLSLRMLKLFGCS 667 (715)
Q Consensus 613 ~c~~I~d~~l~~L~----~~~~~L~~LdLs~C~~Ltd~~l~~L~~---~~~~L~~L~L~gC~ 667 (715)
.| .+.+.+..++. ...|+|+.|.+.+|. |+-.+...++. ..|.|.+|+|++|.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66 34444444333 235566666666643 55444433332 23566666666654
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.17 E-value=4.6e-12 Score=138.96 Aligned_cols=295 Identities=20% Similarity=0.213 Sum_probs=162.6
Q ss_pred CCccEEEEcCC--CCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH
Q 005073 361 GSPTEIRLRDC--SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 361 ~~L~~L~L~~c--~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
++++.|.|.+- +.++.+.+..+ |.|+.|+|+... ++.. -......-.+|++|+|++ +.|+....
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l------~alrslDLSrN~--is~i-----~~~sfp~~~ni~~L~La~-N~It~l~~ 190 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL------PALRSLDLSRNL--ISEI-----PKPSFPAKVNIKKLNLAS-NRITTLET 190 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH------hhhhhhhhhhch--hhcc-----cCCCCCCCCCceEEeecc-cccccccc
Confidence 34566666543 33445544444 567777776543 1110 011122234677777777 56665544
Q ss_pred HHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc--cccCHHH
Q 005073 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI--ETVTDEF 516 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~--~~isd~~ 516 (715)
..+ ..+.+|..|.|+.+ .++.-....+... ++|+.|+|..+..--.. ...++.+++|+.|.|... ..+.|..
T Consensus 191 ~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L--~~L~~LdLnrN~irive--~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 191 GHF-DSLNSLLTLKLSRN-RITTLPQRSFKRL--PKLESLDLNRNRIRIVE--GLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccc-cccchheeeecccC-cccccCHHHhhhc--chhhhhhccccceeeeh--hhhhcCchhhhhhhhhhcCcccccCcc
Confidence 443 44557777777774 2332222222222 67778887777521111 123566777777776543 2333333
Q ss_pred HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC---HH
Q 005073 517 VRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS---DE 593 (715)
Q Consensus 517 l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is---d~ 593 (715)
+.. +.++++|+|..| +++...-..+. +++.|+.|+++++ .|.-.-...+ ..|+.|+.|+|+.|.++ ..
T Consensus 265 Fy~-----l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 265 FYG-----LEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred eee-----ecccceeecccc-hhhhhhccccc-ccchhhhhccchh-hhheeecchh-hhcccceeEeccccccccCChh
Confidence 322 268889998887 34332222222 3677888888873 4433222222 35889999999988654 44
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC---CCCHHHHHHHHhcCCCccEEEEecCCCCC
Q 005073 594 AIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR---NLSDEALGLIVDSCLSLRMLKLFGCSQIT 670 (715)
Q Consensus 594 ~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~---~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt 670 (715)
.+..+ +.|++|+|+.. .|+.-.- .....+.+|+.|||+.+. .|.|. ...+.++++|++|.+.|. ++.
T Consensus 336 sf~~L-----~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ls~~IEDa--a~~f~gl~~LrkL~l~gN-qlk 405 (873)
T KOG4194|consen 336 SFRVL-----SQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIEDA--AVAFNGLPSLRKLRLTGN-QLK 405 (873)
T ss_pred HHHHH-----HHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEecc--hhhhccchhhhheeecCc-eee
Confidence 55544 68899999874 4442111 112346889999988753 13342 223356999999999984 443
Q ss_pred cccccCCCCCCeeEEecCCCCCCCeeecCCCCCC
Q 005073 671 NAFLDGHSNPDVQIIGLKMSPVLEHVKVPDFHEG 704 (715)
Q Consensus 671 ~~~l~~~~~~~L~~l~L~~cp~L~~L~l~~~~~~ 704 (715)
...-. ...+.+.|++|++.+.+..
T Consensus 406 ~I~kr----------Afsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 406 SIPKR----------AFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ecchh----------hhccCcccceecCCCCcce
Confidence 33211 1233456666666665444
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.88 E-value=3.3e-10 Score=124.60 Aligned_cols=135 Identities=23% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCC---HHHHHHHHh
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVA---DNTALSLAK 627 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~---d~~l~~L~~ 627 (715)
|.++++|+|.. +++....-..+. ++..|+.|+|++|.|..-.+..+. .+.+|+.|+|+.. .|+ ...+.
T Consensus 268 l~kme~l~L~~-N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N-~i~~l~~~sf~---- 338 (873)
T KOG4194|consen 268 LEKMEHLNLET-NRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSSN-RITRLDEGSFR---- 338 (873)
T ss_pred ecccceeeccc-chhhhhhccccc-ccchhhhhccchhhhheeecchhh--hcccceeEecccc-ccccCChhHHH----
Confidence 55666666665 244332222222 356777777777765443333332 2368888888774 333 22222
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC---CCCcccccCCCCCCeeEEecCCCCCCCeee
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS---QITNAFLDGHSNPDVQIIGLKMSPVLEHVK 697 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~---~lt~~~l~~~~~~~L~~l~L~~cp~L~~L~ 697 (715)
.+..|++|.|+.++ |+.-.-.. +.++.+|++|+|++.. -|.+.....-.+++|..+.+.+ ++|+.+.
T Consensus 339 ~L~~Le~LnLs~Ns-i~~l~e~a-f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~ 408 (873)
T KOG4194|consen 339 VLSQLEELNLSHNS-IDHLAEGA-FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP 408 (873)
T ss_pred HHHHhhhhcccccc-hHHHHhhH-HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecc
Confidence 24678888888843 54333222 3467888888876521 1333333222345555554442 2444444
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.80 E-value=1.6e-10 Score=127.44 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=114.7
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCC--CChHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSL--LSSTSVDI 466 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~--l~~~~l~~ 466 (715)
..|+.|+|+... +.+ .+.-+...+++-.|+|+.+ .|... -..++.++..|-.|+|+++.. +.. -+..
T Consensus 103 ~dLt~lDLShNq--L~E------vP~~LE~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPP-Q~RR 171 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ--LRE------VPTNLEYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNNRLEMLPP-QIRR 171 (1255)
T ss_pred ccceeeecchhh--hhh------cchhhhhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccchhhhcCH-HHHH
Confidence 567777776543 111 2233345567777777763 33221 123344556777778877521 122 2333
Q ss_pred HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHH
Q 005073 467 LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKV 546 (715)
Q Consensus 467 L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~ 546 (715)
| .+|+.|+|++++.... -+..+..+++|++|++++.+..-+. +..-+... .||..++++.| +++-. ...
T Consensus 172 L-----~~LqtL~Ls~NPL~hf--QLrQLPsmtsL~vLhms~TqRTl~N-~Ptsld~l-~NL~dvDlS~N-~Lp~v-Pec 240 (1255)
T KOG0444|consen 172 L-----SMLQTLKLSNNPLNHF--QLRQLPSMTSLSVLHMSNTQRTLDN-IPTSLDDL-HNLRDVDLSEN-NLPIV-PEC 240 (1255)
T ss_pred H-----hhhhhhhcCCChhhHH--HHhcCccchhhhhhhcccccchhhc-CCCchhhh-hhhhhcccccc-CCCcc-hHH
Confidence 3 5678888888863222 1334555667777777765322111 11111111 57888888876 34321 112
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH--HHHHHHHHhCCCCccEEEeCCCCCCCHHHHHH
Q 005073 547 IAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD--EAIAAFLETAGEPLKELSLNNVRKVADNTALS 624 (715)
Q Consensus 547 L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd--~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~ 624 (715)
+. .+++|..|+|++ +.|+...+. .....+|++|++++|+++. .++-.+ ++|++|.+++. .++=+++++
T Consensus 241 ly-~l~~LrrLNLS~-N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~avcKL-----~kL~kLy~n~N-kL~FeGiPS 310 (1255)
T KOG0444|consen 241 LY-KLRNLRRLNLSG-NKITELNMT--EGEWENLETLNLSRNQLTVLPDAVCKL-----TKLTKLYANNN-KLTFEGIPS 310 (1255)
T ss_pred Hh-hhhhhheeccCc-Cceeeeecc--HHHHhhhhhhccccchhccchHHHhhh-----HHHHHHHhccC-cccccCCcc
Confidence 22 357788888888 466653221 1124678888888886643 333333 56666666653 444334333
Q ss_pred HHhcCCCccEEEecC
Q 005073 625 LAKRSNKLVNLDLSW 639 (715)
Q Consensus 625 L~~~~~~L~~LdLs~ 639 (715)
-...+.+|+.+...+
T Consensus 311 GIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAAN 325 (1255)
T ss_pred chhhhhhhHHHHhhc
Confidence 333344555555544
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.6e-09 Score=113.49 Aligned_cols=212 Identities=21% Similarity=0.191 Sum_probs=105.8
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
.++.+|+++.|.+ +.+...+.....+.||+++.|+|+.+-.-.-..+..+++.+ ++|+.|+|+.|.......
T Consensus 118 sn~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~------ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNRLSNFIS------ 189 (505)
T ss_pred hhHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhcccccccccCCcc------
Confidence 4455666666665 34444444445566777777777775333344455566555 566666666654211110
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
...+. ..++|+.|.|+.| +++...+..+...||+|+.|.+.++..+.-..... .-
T Consensus 190 --------------s~~~~--------~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i 244 (505)
T KOG3207|consen 190 --------------SNTTL--------LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KI 244 (505)
T ss_pred --------------ccchh--------hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hh
Confidence 00000 1145666666666 46655555555566666666666542221111110 11
Q ss_pred CCCccEEEccCCCCCHHH-HHHHHHhCCCCccEEEeCCCCCCCHHHH-----HHHHhcCCCccEEEecCCCCCCHHHHHH
Q 005073 577 CQAIQTLKLCRNAFSDEA-IAAFLETAGEPLKELSLNNVRKVADNTA-----LSLAKRSNKLVNLDLSWCRNLSDEALGL 650 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~-l~~Ll~~~~~~L~~L~L~~c~~I~d~~l-----~~L~~~~~~L~~LdLs~C~~Ltd~~l~~ 650 (715)
+..|+.|+|++|++-+.. +.... ..+.|..|+++.| .+.+-.. ......+++|++|+++.++-..-.++..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~--~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVG--TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred hhHHhhccccCCcccccccccccc--cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 244666666665443322 22111 1255555655554 2322111 1122357888888888854222233444
Q ss_pred HHhcCCCccEEEEec
Q 005073 651 IVDSCLSLRMLKLFG 665 (715)
Q Consensus 651 L~~~~~~L~~L~L~g 665 (715)
+. .+++|+.|.+.+
T Consensus 322 l~-~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 322 LR-TLENLKHLRITL 335 (505)
T ss_pred hh-ccchhhhhhccc
Confidence 43 466777776554
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.9e-09 Score=113.21 Aligned_cols=164 Identities=16% Similarity=0.061 Sum_probs=101.9
Q ss_pred hhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLA 574 (715)
Q Consensus 495 L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~ 574 (715)
.+.|++++.|+|++.-.-.-..+..++.+. |+|+.|+|+.|. +....-......+++|+.|.|+.| .++...+..++
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~ 218 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWIL 218 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhccccccc-ccCCccccchhhhhhhheEEeccC-CCCHHHHHHHH
Confidence 444555555555443222233344444333 666666666552 211111111124678999999998 88888899999
Q ss_pred hcCCCccEEEccCCC-CCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHH-----
Q 005073 575 NGCQAIQTLKLCRNA-FSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEAL----- 648 (715)
Q Consensus 575 ~~~~~Lk~L~Ls~~~-isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l----- 648 (715)
..||+|+.|+|..|. +.-.... ......|++|+|++.+.++-+.... ...+|.|..|.++.|. |++-..
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~-~~~l~~L~~Lnls~tg-i~si~~~d~~s 293 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYK-VGTLPGLNQLNLSSTG-IASIAEPDVES 293 (505)
T ss_pred HhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccc-cccccchhhhhccccC-cchhcCCCccc
Confidence 999999999999883 2221111 1122689999999987776443333 3568999999999874 433222
Q ss_pred HHHHhcCCCccEEEEecC
Q 005073 649 GLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 649 ~~L~~~~~~L~~L~L~gC 666 (715)
......+++|++|++...
T Consensus 294 ~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhhhcccccceeeecccC
Confidence 222345799999999874
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=8.4e-08 Score=112.78 Aligned_cols=169 Identities=17% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHH-hc
Q 005073 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY-AC 524 (715)
Q Consensus 446 p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~-~~ 524 (715)
-+|.+.++.+ ..+....+..+.. ..|++|.|.+...+....... ...++. ..+..++. ..
T Consensus 60 f~ltki~l~~-~~~~~~~~~~l~~---~~L~sl~LGnl~~~k~~~~~~--------~~idi~-------~lL~~~Ln~~s 120 (699)
T KOG3665|consen 60 FNLTKIDLKN-VTLQHQTLEMLRK---QDLESLKLGNLDKIKQDYLDD--------ATIDII-------SLLKDLLNEES 120 (699)
T ss_pred heeEEeeccc-eecchhHHHHHhh---ccccccCCcchHhhhhhhhhh--------hhccHH-------HHHHHHHhHHH
Confidence 4677777777 4455666666654 348888887765433321110 001100 01111111 11
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHhCC
Q 005073 525 GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLETAG 603 (715)
Q Consensus 525 ~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~~~ 603 (715)
..+|++|++++...++......++..+|+|++|.+.+ ..+....+..++.++|+|.+|||+++++++ .|+..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~L----- 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRL----- 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCcHHHhcc-----
Confidence 1456666666655555555556665566666666655 344444455555566666666666655544 233332
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 005073 604 EPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWC 640 (715)
Q Consensus 604 ~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C 640 (715)
.+|+.|.+.+..--+...+..+. ++.+|+.||+|.-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence 45555555544333323333332 2455555555553
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.54 E-value=8.3e-07 Score=104.52 Aligned_cols=262 Identities=19% Similarity=0.227 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHhhccCCCCC---CCCCHHHHHHHHHHHhcC-CCCChhhHHhhh-CCCccEEEEcCCCCCCHHHHHHH
Q 005073 308 IPSLKELSMKILVQNADAITSL---EHVPDALRHKLSFMLCDS-RQMNSHFLNLLF-SGSPTEIRLRDCSWLTEQEFTKA 382 (715)
Q Consensus 308 ~psL~~LcL~~i~~n~~~l~~L---~~lp~~~~~kL~~il~~~-~~l~~~~l~l~~-~~~L~~L~L~~c~~L~~~~l~~l 382 (715)
+++|.++....+++++..-.-. -.++...-.++...+... ............ .=+++.+++.+-. +....+..+
T Consensus 2 ~~sl~~~a~~~ia~~i~ng~y~~~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~~-~~~~~~~~l 80 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQNGSYNNLQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNVT-LQHQTLEML 80 (699)
T ss_pred CCchhhhhHHHHHHHHhcCCccccceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeecccee-cchhHHHHH
Confidence 4677788888888777542211 135555555555544332 112222222221 1245566666554 445545444
Q ss_pred HhhCCCCCeeEEEEccCCCCCChhH-------HHHHHHHHh--cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEee
Q 005073 383 FVSCDTKNLTVLQLDRCGRCMPDYI-------LLSTLASSL--NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINL 453 (715)
Q Consensus 383 ~~~c~~p~L~~L~L~~c~~~l~d~~-------~~~~l~~~~--~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~L 453 (715)
... .|++|.|+.... +.... +...+...+ ..-.+|++|+|+|...++......+...+|+|++|.+
T Consensus 81 ~~~----~L~sl~LGnl~~-~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i 155 (699)
T KOG3665|consen 81 RKQ----DLESLKLGNLDK-IKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI 155 (699)
T ss_pred hhc----cccccCCcchHh-hhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEe
Confidence 333 377777766443 11110 111222221 1235888899988666666666677777899999999
Q ss_pred ccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEe
Q 005073 454 SQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELIL 533 (715)
Q Consensus 454 s~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~L 533 (715)
++- .+....+..++.++ ++|..|||+++. +.. ...++++++|++|.+.+....+...+..++. ..+|+.||+
T Consensus 156 ~~~-~~~~~dF~~lc~sF-pNL~sLDIS~Tn-I~n---l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~--L~~L~vLDI 227 (699)
T KOG3665|consen 156 SGR-QFDNDDFSQLCASF-PNLRSLDISGTN-ISN---LSGISRLKNLQVLSMRNLEFESYQDLIDLFN--LKKLRVLDI 227 (699)
T ss_pred cCc-eecchhHHHHhhcc-CccceeecCCCC-ccC---cHHHhccccHHHHhccCCCCCchhhHHHHhc--ccCCCeeec
Confidence 884 44444577777776 889999998885 333 2567888888888888765554455555542 378888888
Q ss_pred cCCCCCChHH-HHH-H--HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEE
Q 005073 534 TDCVKLTDFS-LKV-I--AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLK 584 (715)
Q Consensus 534 s~c~~Ltd~~-L~~-L--~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~ 584 (715)
|.-....+.. +.. + ...+|+|+.|+.++ ..++..-+..+...-|+|+.+.
T Consensus 228 S~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 228 SRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhh
Confidence 8765444331 111 1 12357777777766 4555555655555445554443
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=2.3e-09 Score=118.51 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=19.8
Q ss_pred cCCCccEEEEecCCCCCcccccCCCCCCeeEEecCCCCCC
Q 005073 654 SCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSPVL 693 (715)
Q Consensus 654 ~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp~L 693 (715)
.|+.|+.|.|.... +-..+-..|-++.|+.+.++..|.|
T Consensus 337 RC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCc
Confidence 36667777765433 3333333344555555555544444
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=2.2e-07 Score=109.98 Aligned_cols=239 Identities=20% Similarity=0.171 Sum_probs=133.3
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
.+++.|.+.+.. ++. +.... ++|++|+|+++. ++. +....++|+.|+|+++ .++. +..
T Consensus 222 ~~L~~L~L~~N~-Lt~-----LP~lp--~~Lk~LdLs~N~--Lts---------LP~lp~sL~~L~Ls~N-~L~~--Lp~ 279 (788)
T PRK15387 222 AHITTLVIPDNN-LTS-----LPALP--PELRTLEVSGNQ--LTS---------LPVLPPGLLELSIFSN-PLTH--LPA 279 (788)
T ss_pred cCCCEEEccCCc-CCC-----CCCCC--CCCcEEEecCCc--cCc---------ccCcccccceeeccCC-chhh--hhh
Confidence 356777777654 432 22222 678888887654 221 1122457777777764 3332 222
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
...+|+.|+|++|. ++. +.. .+++|+.|++++|.. ... .. ...+|+.|++.++. ++. +..
T Consensus 280 ---lp~~L~~L~Ls~N~-Lt~-----LP~-~p~~L~~LdLS~N~L-~~L--p~---lp~~L~~L~Ls~N~-L~~--LP~- 339 (788)
T PRK15387 280 ---LPSGLCKLWIFGNQ-LTS-----LPV-LPPGLQELSVSDNQL-ASL--PA---LPSELCKLWAYNNQ-LTS--LPT- 339 (788)
T ss_pred ---chhhcCEEECcCCc-ccc-----ccc-cccccceeECCCCcc-ccC--CC---CcccccccccccCc-ccc--ccc-
Confidence 23567778877753 221 111 126788888887742 221 00 12356677776642 221 111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
...+|+.|+|++| .|+. +....++|+.|+++++ .++. +.. ...+|+.|+|++|.+.. +..
T Consensus 340 ---lp~~Lq~LdLS~N-~Ls~-----LP~lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdLs~N~Lt~--LP~--- 399 (788)
T PRK15387 340 ---LPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNRLTS--LPV--- 399 (788)
T ss_pred ---cccccceEecCCC-ccCC-----CCCCCcccceehhhcc-cccc--Ccc---cccccceEEecCCcccC--CCC---
Confidence 1247888888887 3543 2223457788887763 5543 222 23578889998887763 211
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcc
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNA 672 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~ 672 (715)
...+|+.|+|+++. ++. +. ..+.+|+.|+++++ .|+. +..-...+++|+.|+|++++ ++..
T Consensus 400 -l~s~L~~LdLS~N~-Lss--IP---~l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~-Ls~~ 460 (788)
T PRK15387 400 -LPSELKELMVSGNR-LTS--LP---MLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP-LSER 460 (788)
T ss_pred -cccCCCEEEccCCc-CCC--CC---cchhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC-CCch
Confidence 12578889888863 441 22 12346888888884 3652 22222358899999998864 6554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.23 E-value=6.2e-07 Score=106.19 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=123.4
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
++++.|++.++. ++. +.... ++|+.|+|..+.. . .+...+.+|+.|.|+++ .++.. .
T Consensus 242 ~~Lk~LdLs~N~-Lts-----LP~lp--~sL~~L~Ls~N~L--~---------~Lp~lp~~L~~L~Ls~N-~Lt~L--P- 298 (788)
T PRK15387 242 PELRTLEVSGNQ-LTS-----LPVLP--PGLLELSIFSNPL--T---------HLPALPSGLCKLWIFGN-QLTSL--P- 298 (788)
T ss_pred CCCcEEEecCCc-cCc-----ccCcc--cccceeeccCCch--h---------hhhhchhhcCEEECcCC-ccccc--c-
Confidence 567788887763 432 11111 6788888876542 1 11122356778888774 44421 1
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC-CCCCEEeecCccccCHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL-KHLEVLSVAGIETVTDEFVRG 519 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l-~~Le~L~Ls~~~~isd~~l~~ 519 (715)
...++|+.|++++|. +.. +.. .+.+|+.|++++|.. .. +..+ .+|+.|+|+++ .++. +..
T Consensus 299 --~~p~~L~~LdLS~N~-L~~--Lp~----lp~~L~~L~Ls~N~L-~~------LP~lp~~Lq~LdLS~N-~Ls~--LP~ 359 (788)
T PRK15387 299 --VLPPGLQELSVSDNQ-LAS--LPA----LPSELCKLWAYNNQL-TS------LPTLPSGLQELSVSDN-QLAS--LPT 359 (788)
T ss_pred --ccccccceeECCCCc-ccc--CCC----CcccccccccccCcc-cc------ccccccccceEecCCC-ccCC--CCC
Confidence 124678888888763 221 111 235677788877752 21 1112 36888888765 3321 111
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHH
Q 005073 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFL 599 (715)
Q Consensus 520 ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll 599 (715)
..++|+.|++++| .|+. +.....+|+.|+|+++ .++. +. ...++|+.|+|++|.+.. +..+
T Consensus 360 ----lp~~L~~L~Ls~N-~L~~-----LP~l~~~L~~LdLs~N-~Lt~--LP---~l~s~L~~LdLS~N~Lss--IP~l- 420 (788)
T PRK15387 360 ----LPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTS--LP---VLPSELKELMVSGNRLTS--LPML- 420 (788)
T ss_pred ----CCcccceehhhcc-cccc-----CcccccccceEEecCC-cccC--CC---CcccCCCEEEccCCcCCC--CCcc-
Confidence 1257788888776 3442 2222356888888774 4542 11 123578888888887653 2211
Q ss_pred HhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHH
Q 005073 600 ETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLI 651 (715)
Q Consensus 600 ~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L 651 (715)
..+|+.|+|+++ .++. +..-...+++|+.|+|++++ ++...+..+
T Consensus 421 ---~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 421 ---PSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred ---hhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC-CCchHHHHH
Confidence 145677777764 3441 22222346788888888854 776655554
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=2.3e-05 Score=80.08 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=87.9
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC--CCCHHH---HH---HHHhhCCCCCEEeeccCCC--
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC--RISDVG---FK---ALVTSAPALRSINLSQCSL-- 458 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~--~lsd~~---l~---~L~~~~p~L~~L~Ls~c~~-- 458 (715)
..+..++|++.. ++... ..++...+.+-.+|+..+++..+ ...+.- +. .....||.|+..+|+.+.+
T Consensus 30 d~~~evdLSGNt--igtEA-~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 30 DELVEVDLSGNT--IGTEA-MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred cceeEEeccCCc--ccHHH-HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 566777776654 33332 34555555666666666666532 111211 11 1123467777777776532
Q ss_pred -CChHHHHHHHHHhcCCceEEEecCCCCchhhh--hHHH---------hhcCCCCCEEeecCcc--ccCHHHHHHHHHhc
Q 005073 459 -LSSTSVDILADKLGSFIQELYINDCQSLNAML--ILPA---------LRKLKHLEVLSVAGIE--TVTDEFVRGFVYAC 524 (715)
Q Consensus 459 -l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~--l~~~---------L~~l~~Le~L~Ls~~~--~isd~~l~~ll~~~ 524 (715)
........++.+ ..|++|.+++|..-...+ +... ...-|.|++....... +.+.......+..+
T Consensus 107 ~~~e~L~d~is~~--t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSS--TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcC--CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 112222233332 567777777664322111 1111 1223445555443221 12222233333333
Q ss_pred CCCccEEEecCCCCCChHHHHHHH----hcCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEEccCCCCCHHHHH
Q 005073 525 GHNMKELILTDCVKLTDFSLKVIA----ETCPRLCTLDLSNLYKLTDFGIGYLA---NGCQAIQTLKLCRNAFSDEAIA 596 (715)
Q Consensus 525 ~~~L~~L~Ls~c~~Ltd~~L~~L~----~~~p~L~~L~Ls~c~~ltd~gl~~l~---~~~~~Lk~L~Ls~~~isd~~l~ 596 (715)
.+|+.+.+..| +|...++..++ ..|.+|+.|+|.. +.++-.|-..++ ..++.|+.|.+..|-++..|..
T Consensus 185 -~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 185 -ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred -cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 45555555554 34444332221 1345555555555 244444433333 2233455555555544444433
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=6.7e-07 Score=103.90 Aligned_cols=225 Identities=23% Similarity=0.268 Sum_probs=110.7
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCC
Q 005073 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~ 499 (715)
.+|+.++++.+ .++. +...+..|++|+.|++.++. ++. -...+... .+|+.|.+.+|. +.. +.+.+..++
T Consensus 241 ~nl~~~dis~n-~l~~--lp~wi~~~~nle~l~~n~N~-l~~-lp~ri~~~--~~L~~l~~~~ne-l~y--ip~~le~~~ 310 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSN--LPEWIGACANLEALNANHNR-LVA-LPLRISRI--TSLVSLSAAYNE-LEY--IPPFLEGLK 310 (1081)
T ss_pred ccceeeecchh-hhhc--chHHHHhcccceEecccchh-HHh-hHHHHhhh--hhHHHHHhhhhh-hhh--CCCcccccc
Confidence 46777777763 2222 22345667888888887753 321 11222222 456666666663 111 233355677
Q ss_pred CCCEEeecCccc--cCHHHHHHHHH---------------------hcCCCccEEEecCCCCCChHHHHHHHhcCCCccE
Q 005073 500 HLEVLSVAGIET--VTDEFVRGFVY---------------------ACGHNMKELILTDCVKLTDFSLKVIAETCPRLCT 556 (715)
Q Consensus 500 ~Le~L~Ls~~~~--isd~~l~~ll~---------------------~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~ 556 (715)
+|++|+|..... +.+..+ ..+. ...+.|+.|.+.+| .++|..+..+. +.++|+.
T Consensus 311 sL~tLdL~~N~L~~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKV 387 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLV-NFKHLKV 387 (1081)
T ss_pred eeeeeeehhccccccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhc-cccceee
Confidence 888888865421 112111 1100 00123455555554 35555554444 3556666
Q ss_pred EEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEE
Q 005073 557 LDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLD 636 (715)
Q Consensus 557 L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~Ld 636 (715)
|+|+++ .+....-..+ ..+..|+.|+|++|.+..-.. .++ .+..|+.|..++.. +. .++.+ ..++.|+.+|
T Consensus 388 LhLsyN-rL~~fpas~~-~kle~LeeL~LSGNkL~~Lp~-tva--~~~~L~tL~ahsN~-l~--~fPe~-~~l~qL~~lD 458 (1081)
T KOG0618|consen 388 LHLSYN-RLNSFPASKL-RKLEELEELNLSGNKLTTLPD-TVA--NLGRLHTLRAHSNQ-LL--SFPEL-AQLPQLKVLD 458 (1081)
T ss_pred eeeccc-ccccCCHHHH-hchHHhHHHhcccchhhhhhH-HHH--hhhhhHHHhhcCCc-ee--echhh-hhcCcceEEe
Confidence 666653 2222111111 224556666666664433210 111 11455555554421 21 11222 2367888888
Q ss_pred ecCCCCCCHHHHHHHHhcCCCccEEEEecCCC
Q 005073 637 LSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQ 668 (715)
Q Consensus 637 Ls~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~ 668 (715)
|+. ++++.-.+.... ..|+|++|+++|...
T Consensus 459 lS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred ccc-chhhhhhhhhhC-CCcccceeeccCCcc
Confidence 886 557665555443 237888888888764
No 27
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.9e-06 Score=84.57 Aligned_cols=105 Identities=25% Similarity=0.347 Sum_probs=83.6
Q ss_pred ccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCcc
Q 005073 580 IQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLR 659 (715)
Q Consensus 580 Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~ 659 (715)
++.++-+++.|..+|+..+-. .++|+.|.+.+|..+.|.++..|..-.++|+.|+|++|++||+.|+..|. .+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 566666777777777776643 27889999999999999999999888899999999999999999999987 599999
Q ss_pred EEEEecCCCCCcccccC----CCCCCeeEEec
Q 005073 660 MLKLFGCSQITNAFLDG----HSNPDVQIIGL 687 (715)
Q Consensus 660 ~L~L~gC~~lt~~~l~~----~~~~~L~~l~L 687 (715)
.|.|++-+.+....... ..+|++.+.+-
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 99999877766654432 15666666553
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=2e-06 Score=88.67 Aligned_cols=234 Identities=19% Similarity=0.210 Sum_probs=117.9
Q ss_pred HHHHHHHhhCCCCCeeEEEEccCCCCCChhHH-HHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeecc
Q 005073 377 QEFTKAFVSCDTKNLTVLQLDRCGRCMPDYIL-LSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQ 455 (715)
Q Consensus 377 ~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~-~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~ 455 (715)
.+|..++.+| ..|..|.++....-+....+ ...++.-+..|.+|+.+.++.|. ...+..+...-|.|..+.+.+
T Consensus 172 ~d~~hildf~--~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 172 YDFSHVLDFC--TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cchHHHHHhh--hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeec
Confidence 3567788888 78999988875542322111 11122223446677777777653 222323333346677776665
Q ss_pred CCCCChHHHHHHHHHhcCCceEEEecCCCCchh-hhhHHHhhcCCCCCEEeecCccccC--HHHHHHHHHhcCCCccEEE
Q 005073 456 CSLLSSTSVDILADKLGSFIQELYINDCQSLNA-MLILPALRKLKHLEVLSVAGIETVT--DEFVRGFVYACGHNMKELI 532 (715)
Q Consensus 456 c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~-~~l~~~L~~l~~Le~L~Ls~~~~is--d~~l~~ll~~~~~~L~~L~ 532 (715)
...-....+. |.-...+...-...+. ......+..+..|+.|++++. .++ |+.+.- .|.++.|+
T Consensus 247 s~~~~~~~l~-------pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL-----~Pkir~L~ 313 (490)
T KOG1259|consen 247 TTIQDVPSLL-------PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKL-----APKLRRLI 313 (490)
T ss_pred cccccccccc-------chhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhh-----ccceeEEe
Confidence 3211000010 1001111111110000 011222344566777777764 222 222221 27788888
Q ss_pred ecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHhCCCCccEEEe
Q 005073 533 LTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLETAGEPLKELSL 611 (715)
Q Consensus 533 Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~~~~~L~~L~L 611 (715)
++.|. |.. +..++ .+++|+.|+|+++ .++. +..+...+.+++.|.|+.|.+.+ .|+..+ -+|..|++
T Consensus 314 lS~N~-i~~--v~nLa-~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL-----YSLvnLDl 381 (490)
T KOG1259|consen 314 LSQNR-IRT--VQNLA-ELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQNKIETLSGLRKL-----YSLVNLDL 381 (490)
T ss_pred ccccc-eee--ehhhh-hcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhhhHhhhhhhHhh-----hhheeccc
Confidence 88874 332 22233 3677888888773 4433 22333346778888888876644 344444 46777777
Q ss_pred CCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 612 NNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 612 ~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
.++ +|....-..-..++|.|+.|.|.+++
T Consensus 382 ~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 382 SSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 774 34322111122457778888777764
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=0.00019 Score=73.60 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCC---CCCEEeecc
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAP---ALRSINLSQ 455 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p---~L~~L~Ls~ 455 (715)
+..+++++|+| +.++...+..+..... +|+..+++.
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 77899999999 5677777777665544 444444444
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.91 E-value=1e-05 Score=96.26 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=100.9
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++. +.. ++. ..+++|+.|+|+++ .++. +..- ..++|+.|+|++|.. .. +.
T Consensus 199 ~~L~~L~Ls~N~--Lts------LP~--~l~~nL~~L~Ls~N-~Lts--LP~~--l~~~L~~L~Ls~N~L-~~-----LP 257 (754)
T PRK15370 199 EQITTLILDNNE--LKS------LPE--NLQGNIKTLYANSN-QLTS--IPAT--LPDTIQEMELSINRI-TE-----LP 257 (754)
T ss_pred cCCcEEEecCCC--CCc------CCh--hhccCCCEEECCCC-cccc--CChh--hhccccEEECcCCcc-Cc-----CC
Confidence 467777776654 221 111 11246777777764 3332 1110 124677777776532 11 11
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
..++++|+.|++++|. +.. +...+ .++|+.|+++++. ++. +.. ...++|+.|++++| .++....
T Consensus 258 ~~l~s~L~~L~Ls~N~-L~~--LP~~l--~~sL~~L~Ls~N~-Lt~--LP~---~lp~sL~~L~Ls~N-~Lt~LP~---- 321 (754)
T PRK15370 258 ERLPSALQSLDLFHNK-ISC--LPENL--PEELRYLSVYDNS-IRT--LPA---HLPSGITHLNVQSN-SLTALPE---- 321 (754)
T ss_pred hhHhCCCCEEECcCCc-cCc--ccccc--CCCCcEEECCCCc-ccc--Ccc---cchhhHHHHHhcCC-ccccCCc----
Confidence 1112467777776653 221 11111 2467777776642 221 110 11135666666665 2332110
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
...++|+.|++++| .++. +.. ..+++|+.|+|++|.+.. +... ..++|+.|+|++|. ++.- ...+
T Consensus 322 ~l~~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N~L~~--LP~~---lp~~L~~LdLs~N~-Lt~L-P~~l--- 386 (754)
T PRK15370 322 TLPPGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKNQITV--LPET---LPPTITTLDVSRNA-LTNL-PENL--- 386 (754)
T ss_pred cccccceeccccCC-cccc--CCh--hhcCcccEEECCCCCCCc--CChh---hcCCcCEEECCCCc-CCCC-CHhH---
Confidence 01245666666664 3332 111 113566677776665542 1110 12466667766653 3210 0011
Q ss_pred CCCccEEEecCCCCCCH--HHHHHHHhcCCCccEEEEecC
Q 005073 629 SNKLVNLDLSWCRNLSD--EALGLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd--~~l~~L~~~~~~L~~L~L~gC 666 (715)
...|+.|++++|. ++. ..+..+...+++|..|+|.+.
T Consensus 387 ~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 387 PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCC
Confidence 1246666666643 331 123333334566666666653
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=1.2e-05 Score=83.18 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=145.4
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCH-HHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHH
Q 005073 391 LTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISD-VGFKALVTSAPALRSINLSQCSLLSSTSVDILAD 469 (715)
Q Consensus 391 L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd-~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~ 469 (715)
|+-|.+.+|. ++... ....+...+..+++|+|.+ +.+++ ..+..+..++|.|+.|+|+.+..-.+ +..+..
T Consensus 47 ~ellvln~~~--id~~g---d~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~ 118 (418)
T KOG2982|consen 47 LELLVLNGSI--IDNEG---DVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPL 118 (418)
T ss_pred hhhheecCCC--CCcch---hHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcc
Confidence 4455666665 22221 2344556678999999999 55654 56777888999999999988643222 333321
Q ss_pred HhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCcc----ccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHH
Q 005073 470 KLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE----TVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLK 545 (715)
Q Consensus 470 ~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~----~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~ 545 (715)
-. .+|+.|.|++.. ++.......+..+|.++.|+++... ++.++.... ..+.+++|++..|...--....
T Consensus 119 p~-~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 119 PL-KNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred cc-cceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHH
Confidence 11 689999998875 5555556678888889999887642 233333332 2267888999888543334455
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHhCCCCccEEEeCCCCCCCHHH---
Q 005073 546 VIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLETAGEPLKELSLNNVRKVADNT--- 621 (715)
Q Consensus 546 ~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~--- 621 (715)
.+.+.+|++..+.+..|+ +.+..-+.-....|.+-.|+|+.++|.+ +++.++.. .+.|..|.+...+......
T Consensus 193 ~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~--f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNG--FPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred hHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcC--CchhheeeccCCcccccccCCc
Confidence 667778999999998773 3332223333456778888888888866 44444432 3788888888865433110
Q ss_pred -HHHHHhcCCCccEEEec
Q 005073 622 -ALSLAKRSNKLVNLDLS 638 (715)
Q Consensus 622 -l~~L~~~~~~L~~LdLs 638 (715)
..-+...+++++.|+=+
T Consensus 270 rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ceEEEEeeccceEEecCc
Confidence 11123456777777533
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=6.3e-06 Score=85.07 Aligned_cols=210 Identities=14% Similarity=0.096 Sum_probs=123.4
Q ss_pred CCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCC
Q 005073 447 ALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGH 526 (715)
Q Consensus 447 ~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~ 526 (715)
.++-|.+.+|..-+...+..++..+ +.+++|+|.+|...+...+...+.++|+|+.|+|+... ++.. +..+. ....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~-~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~-I~~lp-~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSV-TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSD-IKSLP-LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHh-hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCc-cccCc-cccc
Confidence 3445555665433333455555555 77888888888766666677778888888888887543 3211 11111 1126
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCC----CCChHHHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHh
Q 005073 527 NMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY----KLTDFGIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLET 601 (715)
Q Consensus 527 ~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~----~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~ 601 (715)
+|+.|.|.+. .++-.....+...+|.++.|+++.++ ++.+...+.+. +.++.|.+..|.+.- .....+. .
T Consensus 122 nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s---~~v~tlh~~~c~~~~w~~~~~l~-r 196 (418)
T KOG2982|consen 122 NLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS---TEVLTLHQLPCLEQLWLNKNKLS-R 196 (418)
T ss_pred ceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc---hhhhhhhcCCcHHHHHHHHHhHH-h
Confidence 7888888774 67777777777778888888887642 23333333321 345555555553211 1111111 1
Q ss_pred CCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCH-HHHHHHHhcCCCccEEEEecCCC
Q 005073 602 AGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSD-EALGLIVDSCLSLRMLKLFGCSQ 668 (715)
Q Consensus 602 ~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd-~~l~~L~~~~~~L~~L~L~gC~~ 668 (715)
..+++..+-+..|+ +.+.....-...+|.+--|.|+.. +|++ .++..+ .+++.|..|.+.+.+-
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~L-n~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDAL-NGFPQLVDLRVSENPL 261 (418)
T ss_pred hcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHH-cCCchhheeeccCCcc
Confidence 23778888888774 333333333345677777788773 4643 445555 4689999998887653
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.82 E-value=2.6e-05 Score=92.91 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=138.9
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
..++.|+|.++. ++. +.. ..+ ++|+.|+|+++. +.. ++.. ..++|+.|+|++|. +....- .
T Consensus 199 ~~L~~L~Ls~N~-Lts--LP~--~l~--~nL~~L~Ls~N~--Lts------LP~~--l~~~L~~L~Ls~N~-L~~LP~-~ 259 (754)
T PRK15370 199 EQITTLILDNNE-LKS--LPE--NLQ--GNIKTLYANSNQ--LTS------IPAT--LPDTIQEMELSINR-ITELPE-R 259 (754)
T ss_pred cCCcEEEecCCC-CCc--CCh--hhc--cCCCEEECCCCc--ccc------CChh--hhccccEEECcCCc-cCcCCh-h
Confidence 457788887764 442 111 112 589999998775 321 1111 12478999999854 432111 1
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+ ..+|+.|+++++ .++. +...++++|+.|+|++|. +... ...+ .++|+.|+++++. +.. +.
T Consensus 260 l---~s~L~~L~Ls~N-~L~~-----LP~~l~~sL~~L~Ls~N~-Lt~L--P~~l--p~sL~~L~Ls~N~-Lt~--LP-- 320 (754)
T PRK15370 260 L---PSALQSLDLFHN-KISC-----LPENLPEELRYLSVYDNS-IRTL--PAHL--PSGITHLNVQSNS-LTA--LP-- 320 (754)
T ss_pred H---hCCCCEEECcCC-ccCc-----cccccCCCCcEEECCCCc-cccC--cccc--hhhHHHHHhcCCc-ccc--CC--
Confidence 1 257999999875 3332 112234689999999985 3221 1111 1367888887653 321 11
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
....++|+.|++++|. ++... .. .+++|+.|+|++| .++.... .+ .+.|+.|+|++|.+..- ..-+
T Consensus 321 -~~l~~sL~~L~Ls~N~-Lt~LP-~~---l~~sL~~L~Ls~N-~L~~LP~-~l---p~~L~~LdLs~N~Lt~L--P~~l- 386 (754)
T PRK15370 321 -ETLPPGLKTLEAGENA-LTSLP-AS---LPPELQVLDVSKN-QITVLPE-TL---PPTITTLDVSRNALTNL--PENL- 386 (754)
T ss_pred -ccccccceeccccCCc-cccCC-hh---hcCcccEEECCCC-CCCcCCh-hh---cCCcCEEECCCCcCCCC--CHhH-
Confidence 1122689999999983 54321 11 2478999999986 5553111 12 36899999999987641 1111
Q ss_pred hCCCCccEEEeCCCCCCCH--HHHHHHHhcCCCccEEEecCCCCCCHHHHHHH
Q 005073 601 TAGEPLKELSLNNVRKVAD--NTALSLAKRSNKLVNLDLSWCRNLSDEALGLI 651 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d--~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L 651 (715)
...|+.|+++++. +.. ..+..+...+++|..|+|.+++ ++...+..+
T Consensus 387 --~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 387 --PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred --HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHH
Confidence 1368888888863 431 2344455567899999999965 776555544
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.79 E-value=4.2e-06 Score=97.52 Aligned_cols=126 Identities=29% Similarity=0.390 Sum_probs=69.8
Q ss_pred CceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc--cccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC
Q 005073 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI--ETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETC 551 (715)
Q Consensus 474 ~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~--~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~ 551 (715)
.|+.|++.+|. +++. .++.+..+++|++|+|++. +.+.+..+..+ ..|++|+|++| .++... ..++ .|
T Consensus 360 ~Lq~LylanN~-Ltd~-c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSGN-kL~~Lp-~tva-~~ 429 (1081)
T KOG0618|consen 360 ALQELYLANNH-LTDS-CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSGN-KLTTLP-DTVA-NL 429 (1081)
T ss_pred HHHHHHHhcCc-cccc-chhhhccccceeeeeecccccccCCHHHHhch-----HHhHHHhcccc-hhhhhh-HHHH-hh
Confidence 45666666664 3332 3556677777777777664 33444444433 56777777776 344333 2233 36
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCC
Q 005073 552 PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVR 615 (715)
Q Consensus 552 p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~ 615 (715)
+.|++|...+ +.+.. +..+++ ++.|+.+||+.|+++...+...+.. ++|++|+|+|..
T Consensus 430 ~~L~tL~ahs-N~l~~--fPe~~~-l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLS--FPELAQ-LPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcC-Cceee--chhhhh-cCcceEEecccchhhhhhhhhhCCC--cccceeeccCCc
Confidence 6677766544 23332 233433 5677777777776665444433221 566666666654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.75 E-value=2.5e-05 Score=76.68 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=36.6
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCH-HHHHHHHhhCCCCCEEeeccCCCCChHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISD-VGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd-~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L 467 (715)
..++.|+|.++.. +. +..+...+.+|+.|+|+++ .++. .++ ..++.|+.|+++++. ++.-+ ..+
T Consensus 19 ~~~~~L~L~~n~I--~~------Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l----~~L~~L~~L~L~~N~-I~~i~-~~l 83 (175)
T PF14580_consen 19 VKLRELNLRGNQI--ST------IENLGATLDKLEVLDLSNN-QITKLEGL----PGLPRLKTLDLSNNR-ISSIS-EGL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--SS----S-C-HHH
T ss_pred ccccccccccccc--cc------ccchhhhhcCCCEEECCCC-CCccccCc----cChhhhhhcccCCCC-CCccc-cch
Confidence 4567777777652 11 2222234667777777774 3332 222 335777777777752 32210 112
Q ss_pred HHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEe
Q 005073 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELIL 533 (715)
Q Consensus 468 ~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~L 533 (715)
...+ ++|++|++++|. +.+..-...+..+++|++|++.+++-........++-...|+|+.||-
T Consensus 84 ~~~l-p~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNL-PNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH--TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhC-CcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 2222 677777777764 222222344556666666666654332222222222233355555544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.61 E-value=2.2e-05 Score=77.13 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=4.3
Q ss_pred CCCccEEEccCCCC
Q 005073 577 CQAIQTLKLCRNAF 590 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~i 590 (715)
|++|+.|+|.+|.+
T Consensus 112 l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 112 LPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TT-GG
T ss_pred CCCcceeeccCCcc
Confidence 44455555544443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.61 E-value=6.3e-05 Score=91.09 Aligned_cols=15 Identities=40% Similarity=0.602 Sum_probs=10.2
Q ss_pred CCCccEEEecCCCCC
Q 005073 629 SNKLVNLDLSWCRNL 643 (715)
Q Consensus 629 ~~~L~~LdLs~C~~L 643 (715)
.|+|+.|.+.+|+.+
T Consensus 769 ~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLL 783 (889)
T ss_pred cCcccEEEEeccccc
Confidence 467777777777654
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.45 E-value=1.5e-05 Score=85.16 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHH
Q 005073 572 YLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLI 651 (715)
Q Consensus 572 ~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L 651 (715)
.-++.+++|+.|+|++|.++...-.+|-.. ..|++|.|... .|... -..+.+++..|+.|+|.++ +||-.....+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~N-~it~~~~~aF 342 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYDN-QITTVAPGAF 342 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcch--hhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecCC-eeEEEecccc
Confidence 335678999999999998876544444333 57888888774 33211 1123467889999999994 4765544443
Q ss_pred HhcCCCccEEEEec
Q 005073 652 VDSCLSLRMLKLFG 665 (715)
Q Consensus 652 ~~~~~~L~~L~L~g 665 (715)
+....|..|++.+
T Consensus 343 -~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 -QTLFSLSTLNLLS 355 (498)
T ss_pred -cccceeeeeehcc
Confidence 4567888888864
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00031 Score=69.32 Aligned_cols=47 Identities=34% Similarity=0.564 Sum_probs=19.5
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 005073 527 NMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYL 573 (715)
Q Consensus 527 ~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l 573 (715)
.|+.|.+.+|..+.|.++..+....++|+.|+|++|+.||+.|+..+
T Consensus 126 ~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 126 SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 34444444444444444444443334444444444444444444333
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.23 E-value=0.00025 Score=86.04 Aligned_cols=235 Identities=20% Similarity=0.186 Sum_probs=121.8
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCC--hHHHHHHHHHhcCCceEEEecCCCCchhhhhHHH
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLS--STSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~--~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~ 494 (715)
..+++|++|-+.+....-...-..++..+|.|+.|+|++|..+. +..+..+ -+|+.|+++++. +. .++..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L-----i~LryL~L~~t~-I~--~LP~~ 613 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL-----VHLRYLDLSDTG-IS--HLPSG 613 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh-----hhhhcccccCCC-cc--ccchH
Confidence 45667888887764210111122345667888889988875433 2234333 467888888875 22 25667
Q ss_pred hhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCC-CCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 005073 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCV-KLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYL 573 (715)
Q Consensus 495 L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~-~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l 573 (715)
+.+++.|.+|++....... .+..+. ...++|+.|.+.... ..+...+..+ ..+.+|+.|.+..+.. ..+..+
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~--~~~~i~-~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~---~~~e~l 686 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLE--SIPGIL-LELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV---LLLEDL 686 (889)
T ss_pred HHHHHhhheeccccccccc--cccchh-hhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchh---HhHhhh
Confidence 8888888888887543221 111111 112788888886542 2333334444 2355666666544321 111111
Q ss_pred HhcCCCc----cEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHH----HHh-cCCCccEEEecCCCCCC
Q 005073 574 ANGCQAI----QTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALS----LAK-RSNKLVNLDLSWCRNLS 644 (715)
Q Consensus 574 ~~~~~~L----k~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~----L~~-~~~~L~~LdLs~C~~Lt 644 (715)
. ....| +.+.+.++.... ....+ ....+|+.|.+.+|..... .+.. ... .+++|..+.+..|..+.
T Consensus 687 ~-~~~~L~~~~~~l~~~~~~~~~-~~~~~--~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 687 L-GMTRLRSLLQSLSIEGCSKRT-LISSL--GSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred h-hhHHHHHHhHhhhhcccccce-eeccc--ccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhcccccc
Confidence 1 11111 122222211100 00001 1126888888888754221 1100 000 24566666666776554
Q ss_pred HHHHHHHHhcCCCccEEEEecCCCCCcccc
Q 005073 645 DEALGLIVDSCLSLRMLKLFGCSQITNAFL 674 (715)
Q Consensus 645 d~~l~~L~~~~~~L~~L~L~gC~~lt~~~l 674 (715)
+..... ..|+|+.|.+.+|..+.+...
T Consensus 762 ~l~~~~---f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 762 DLTWLL---FAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccchhh---ccCcccEEEEecccccccCCC
Confidence 443332 358999999999998877643
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.00012 Score=75.72 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=116.6
Q ss_pred HHHHHHHhhCCCCCEEeeccCCC------CChHHHH-HHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecC
Q 005073 436 VGFKALVTSAPALRSINLSQCSL------LSSTSVD-ILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAG 508 (715)
Q Consensus 436 ~~l~~L~~~~p~L~~L~Ls~c~~------l~~~~l~-~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~ 508 (715)
..+..+...|.+|..|.+++... +....+. .+. ...+|+.+.++.|..-... .....-|.|..+.+.+
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~--~f~~l~~~~~s~~~~~~i~---~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLN--AFRNLKTLKFSALSTENIV---DIELLKPTLQTICVHN 246 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchH--Hhhhhheeeeeccchhhee---ceeecCchhheeeeec
Confidence 34666778889999999987632 1111110 111 1277899999988532211 1122235666666543
Q ss_pred ccccCH-------HHH---------------HHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCC
Q 005073 509 IETVTD-------EFV---------------RGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLT 566 (715)
Q Consensus 509 ~~~isd-------~~l---------------~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~lt 566 (715)
.. +.+ ..+ ...+..+ +.|++|+|++|. |+. +..-.+-.|.++.|+++++ .+.
T Consensus 247 s~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW-q~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N-~i~ 320 (490)
T KOG1259|consen 247 TT-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTW-QELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQN-RIR 320 (490)
T ss_pred cc-ccccccccchhhhcCccCCCCCccCCceEEecchH-hhhhhccccccc-hhh--hhhhhhhccceeEEecccc-cee
Confidence 21 110 000 0011122 568888998873 432 2222234678899999884 555
Q ss_pred hHHHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCH
Q 005073 567 DFGIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSD 645 (715)
Q Consensus 567 d~gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd 645 (715)
..+ .++ .+++|+.|+|++|.++. +|+..-+ .+++.|+|.++ .|.+ +..+ ..+-+|..||+++++ |..
T Consensus 321 ~v~--nLa-~L~~L~~LDLS~N~Ls~~~Gwh~KL----GNIKtL~La~N-~iE~--LSGL-~KLYSLvnLDl~~N~-Ie~ 388 (490)
T KOG1259|consen 321 TVQ--NLA-ELPQLQLLDLSGNLLAECVGWHLKL----GNIKTLKLAQN-KIET--LSGL-RKLYSLVNLDLSSNQ-IEE 388 (490)
T ss_pred eeh--hhh-hcccceEeecccchhHhhhhhHhhh----cCEeeeehhhh-hHhh--hhhh-Hhhhhheeccccccc-hhh
Confidence 422 233 46889999999887654 3332211 68888888874 2321 1122 246788899998854 532
Q ss_pred -HHHHHHHhcCCCccEEEEecCC
Q 005073 646 -EALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 646 -~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
+.+..|+ .+|.|+.|.+.+.+
T Consensus 389 ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 389 LDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred HHHhcccc-cccHHHHHhhcCCC
Confidence 3344443 58888888887754
No 42
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.76 E-value=0.00088 Score=76.07 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=33.7
Q ss_pred ccEEEecCCCCCChHHHHHHHhcC----CCccEEEecCCCCCChHHHHHH---HhcCCCccEEEccCCCCCHHHHHHHH
Q 005073 528 MKELILTDCVKLTDFSLKVIAETC----PRLCTLDLSNLYKLTDFGIGYL---ANGCQAIQTLKLCRNAFSDEAIAAFL 599 (715)
Q Consensus 528 L~~L~Ls~c~~Ltd~~L~~L~~~~----p~L~~L~Ls~c~~ltd~gl~~l---~~~~~~Lk~L~Ls~~~isd~~l~~Ll 599 (715)
+..|++..| .+.|.++..+...+ +.|+.|++..| .+++.+...+ ...|+.++.|.+..|.+.+.+...++
T Consensus 235 ~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 235 LRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLL 311 (478)
T ss_pred hHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHH
Confidence 444555554 35555444444332 23355555554 4444433322 23345555666666655555444433
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.62 E-value=0.00056 Score=73.52 Aligned_cols=255 Identities=19% Similarity=0.213 Sum_probs=119.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
+.-..|.|..... +. ..+...+.+++|+.|+|+. +.|+...-.+ ++++++|..|-+.++..+++-.-..+.
T Consensus 67 ~~tveirLdqN~I--~~-----iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQI--SS-----IPPGAFKTLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCCc--cc-----CChhhccchhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 3455666665442 11 1233446677888888877 4555444333 355667777766665555554333333
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHH---hcCCCccEEEecCCCCCChHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY---ACGHNMKELILTDCVKLTDFSLK 545 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~---~~~~~L~~L~Ls~c~~Ltd~~L~ 545 (715)
.. ..|+.|.++-|. +.-. ....+..+++|..|.+... .+..+.. .-...++.+++..++.+.+-.+.
T Consensus 138 gL--~slqrLllNan~-i~Ci-r~~al~dL~~l~lLslyDn------~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 138 GL--SSLQRLLLNANH-INCI-RQDALRDLPSLSLLSLYDN------KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hH--HHHHHHhcChhh-hcch-hHHHHHHhhhcchhcccch------hhhhhccccccchhccchHhhhcCccccccccc
Confidence 22 345555555443 1111 2345667777777766542 1111111 01145677777766544433222
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHH-------hcCCCccEE--EccC-CCCCH----HHHHHHHHhCCCCccEEEe
Q 005073 546 VIAETCPRLCTLDLSNLYKLTDFGIGYLA-------NGCQAIQTL--KLCR-NAFSD----EAIAAFLETAGEPLKELSL 611 (715)
Q Consensus 546 ~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~-------~~~~~Lk~L--~Ls~-~~isd----~~l~~Ll~~~~~~L~~L~L 611 (715)
.++.... ......++-.......+...- +..-.++.+ .+.. +.... ..+..+ ++|+.|+|
T Consensus 208 wla~~~a-~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-----~~L~~lnl 281 (498)
T KOG4237|consen 208 WLADDLA-MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-----PNLRKLNL 281 (498)
T ss_pred hhhhHHh-hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-----ccceEecc
Confidence 2221100 000011111111111111000 000012222 1111 21111 222222 78999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccc
Q 005073 612 NNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAF 673 (715)
Q Consensus 612 ~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~ 673 (715)
++. .|+.-.-.++ .....|++|.|..+ .|... -..+++++..|+.|+|++ ++||-..
T Consensus 282 snN-~i~~i~~~aF-e~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~ 338 (498)
T KOG4237|consen 282 SNN-KITRIEDGAF-EGAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYD-NQITTVA 338 (498)
T ss_pred CCC-ccchhhhhhh-cchhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecC-CeeEEEe
Confidence 884 4543221111 23567888888884 35322 234557899999999999 4676653
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.57 E-value=0.00031 Score=80.30 Aligned_cols=105 Identities=28% Similarity=0.253 Sum_probs=58.3
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCC
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSN 630 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~ 630 (715)
+|.|+.|+|++ +++++.. ....|+.|++|||++|.+.-. ..+. ..+..|+.|+|.++ .++ .+..+ .++.
T Consensus 186 l~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~v--p~l~-~~gc~L~~L~lrnN-~l~--tL~gi-e~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCLRHV--PQLS-MVGCKLQLLNLRNN-ALT--TLRGI-ENLK 254 (1096)
T ss_pred HHHhhhhccch-hhhhhhH---HHHhcccccccccccchhccc--cccc-hhhhhheeeeeccc-HHH--hhhhH-Hhhh
Confidence 35678888887 4665532 334578888888887754321 1111 12245888888774 222 11122 3467
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 631 KLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 631 ~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
+|+.||++++ .|.+.+--...-.+..|+.|.|.|.+
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888884 34433321222235577777777643
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.42 E-value=0.0093 Score=65.92 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=86.9
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCC-CCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLK-HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETC 551 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~-~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~ 551 (715)
.+++.|+|++|. +.. +..+| +|+.|.+.+|..+.. +... ..++|+.|.+++|..+. .+ .
T Consensus 52 ~~l~~L~Is~c~-L~s------LP~LP~sLtsL~Lsnc~nLts--LP~~---LP~nLe~L~Ls~Cs~L~-----sL---P 111 (426)
T PRK15386 52 RASGRLYIKDCD-IES------LPVLPNELTEITIENCNNLTT--LPGS---IPEGLEKLTVCHCPEIS-----GL---P 111 (426)
T ss_pred cCCCEEEeCCCC-Ccc------cCCCCCCCcEEEccCCCCccc--CCch---hhhhhhheEccCccccc-----cc---c
Confidence 788999999883 333 12344 688888888766421 1111 12578888888886553 12 2
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC-CHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc-C
Q 005073 552 PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF-SDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR-S 629 (715)
Q Consensus 552 p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i-sd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~-~ 629 (715)
++|+.|.|.+ ..... + ....++|+.|.+.+++. ....+. ...+.+|+.|.+.+|..+. +... .
T Consensus 112 ~sLe~L~L~~-n~~~~--L---~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~------LP~~LP 176 (426)
T PRK15386 112 ESVRSLEIKG-SATDS--I---KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII------LPEKLP 176 (426)
T ss_pred cccceEEeCC-CCCcc--c---ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc------Cccccc
Confidence 4688888764 23222 1 12234677777754321 111111 1134688888888886542 1111 2
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcC-CCccEEEEecCCCCCcc
Q 005073 630 NKLVNLDLSWCRNLSDEALGLIVDSC-LSLRMLKLFGCSQITNA 672 (715)
Q Consensus 630 ~~L~~LdLs~C~~Ltd~~l~~L~~~~-~~L~~L~L~gC~~lt~~ 672 (715)
.+|+.|.++.+...+ +......+ +++ .|.+.+|-++...
T Consensus 177 ~SLk~L~ls~n~~~s---LeI~~~sLP~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 177 ESLQSITLHIEQKTT---WNISFEGFPDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred ccCcEEEeccccccc---ccCccccccccc-EechhhhcccCHH
Confidence 478888887643111 00001112 355 7777777555443
No 46
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.37 E-value=0.0038 Score=70.93 Aligned_cols=216 Identities=25% Similarity=0.333 Sum_probs=122.3
Q ss_pred ccEEEecCCCCCCHHHHHHHHh---hCCCCCEEeeccCCCCChHHHHHHHHHhc---CCceEEEecCCCCchh--hhhHH
Q 005073 422 LTTLSICGACRISDVGFKALVT---SAPALRSINLSQCSLLSSTSVDILADKLG---SFIQELYINDCQSLNA--MLILP 493 (715)
Q Consensus 422 L~~L~Ls~c~~lsd~~l~~L~~---~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~---~~L~~L~Ls~c~~l~~--~~l~~ 493 (715)
|..|.|.+| .+.+.++..+.. ..+.|..|+++++ .+++.+...+++... ..|+.|.+..|..... ..+..
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 455555552 334434433332 3455666666663 344555555554321 2345555655542211 12444
Q ss_pred HhhcCCCCCEEeecCccccCHHHHHHH---HHh---cCCCccEEEecCCCCCChHHHHHHHhcC---CC-ccEEEecCCC
Q 005073 494 ALRKLKHLEVLSVAGIETVTDEFVRGF---VYA---CGHNMKELILTDCVKLTDFSLKVIAETC---PR-LCTLDLSNLY 563 (715)
Q Consensus 494 ~L~~l~~Le~L~Ls~~~~isd~~l~~l---l~~---~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~---p~-L~~L~Ls~c~ 563 (715)
.+....+|+.++++.+... ..+...+ +.. ...++++|.+.+| .++...+..+.... +. +..|++.. +
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 5555667777777655333 2222221 121 2367999999998 57776666555443 33 55577766 5
Q ss_pred CCChHHHHHHHhcCC----CccEEEccCCCCCHHHHHHHHHh--CCCCccEEEeCCCCCCCHHHHHHHHh---cCCCccE
Q 005073 564 KLTDFGIGYLANGCQ----AIQTLKLCRNAFSDEAIAAFLET--AGEPLKELSLNNVRKVADNTALSLAK---RSNKLVN 634 (715)
Q Consensus 564 ~ltd~gl~~l~~~~~----~Lk~L~Ls~~~isd~~l~~Ll~~--~~~~L~~L~L~~c~~I~d~~l~~L~~---~~~~L~~ 634 (715)
.+.|.|+..+...++ .++.+++..|.|++.+...+.+. .+..++.|.|... .+++.+...+.. ....+.+
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchh
Confidence 888888887765544 45899999999988766554332 2358999999875 566655444432 2345555
Q ss_pred EEecCCCCC
Q 005073 635 LDLSWCRNL 643 (715)
Q Consensus 635 LdLs~C~~L 643 (715)
+-+.++...
T Consensus 323 ~~l~~~~~~ 331 (478)
T KOG4308|consen 323 LVLGGTGKG 331 (478)
T ss_pred hhccccCcc
Confidence 555554333
No 47
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.30 E-value=0.00062 Score=73.27 Aligned_cols=102 Identities=29% Similarity=0.323 Sum_probs=53.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH--HHHHHHHHhCCCCccEEEeCCCCCC---CHHHHHH
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD--EAIAAFLETAGEPLKELSLNNVRKV---ADNTALS 624 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd--~~l~~Ll~~~~~~L~~L~L~~c~~I---~d~~l~~ 624 (715)
.+++|+.|+++++ .+.+...+.. .+..|+.|+|+.|.|.. ..+..+ ..|+.+-.++ +.+ ...++
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e~~--~lv~Lq~LnlS~NrFr~lP~~~y~l-----q~lEtllas~-nqi~~vd~~~l-- 501 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEEMG--SLVRLQTLNLSFNRFRMLPECLYEL-----QTLETLLASN-NQIGSVDPSGL-- 501 (565)
T ss_pred hhhcceeeecccc-hhhhcchhhh--hhhhhheecccccccccchHHHhhH-----HHHHHHHhcc-ccccccChHHh--
Confidence 4677788887763 3333222211 24557888888776543 122211 1122222221 222 22222
Q ss_pred HHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 625 LAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 625 L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
.++.+|..||+.++. + ..+.-+..+|.+|+.|+++|.+
T Consensus 502 --~nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 --KNMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred --hhhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence 235778888887743 3 3444555678888888888854
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.16 E-value=0.0013 Score=75.58 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=97.5
Q ss_pred HHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCC
Q 005073 378 EFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCS 457 (715)
Q Consensus 378 ~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~ 457 (715)
.+..++... +.++.|.+-.... .+.. . +-.+..|..|+.|.|.+|+.-+..|+..+-. .|++|--.+
T Consensus 75 qLq~i~d~l--qkt~~lkl~~~pa--~~pt--~--pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~-- 141 (1096)
T KOG1859|consen 75 QLQRILDFL--QKTKVLKLLPSPA--RDPT--E--PISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN-- 141 (1096)
T ss_pred HHHHHHHHH--hhheeeeecccCC--CCCC--C--CceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc--
Confidence 344455554 5666666544321 1110 0 1123456778888888876555555554432 233332111
Q ss_pred CCChHHHHHHHHHhc---------CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCc
Q 005073 458 LLSSTSVDILADKLG---------SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNM 528 (715)
Q Consensus 458 ~l~~~~l~~L~~~~~---------~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L 528 (715)
-. ..+..+...|+ ..|...+.++|.... +-..++-++.|+.|+|+.+.....+.+. .+++|
T Consensus 142 -Sl-~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~---mD~SLqll~ale~LnLshNk~~~v~~Lr-----~l~~L 211 (1096)
T KOG1859|consen 142 -SL-DALRHVFASCGGDISNSPVWNKLATASFSYNRLVL---MDESLQLLPALESLNLSHNKFTKVDNLR-----RLPKL 211 (1096)
T ss_pred -cH-HHHHHHHHHhccccccchhhhhHhhhhcchhhHHh---HHHHHHHHHHhhhhccchhhhhhhHHHH-----hcccc
Confidence 11 12222222211 113333333332111 2334666778888888775333323222 22788
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCCh-HHHHHHHhcCCCccEEEccCCCCCHHH-HHHHHHhCCCCc
Q 005073 529 KELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTD-FGIGYLANGCQAIQTLKLCRNAFSDEA-IAAFLETAGEPL 606 (715)
Q Consensus 529 ~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd-~gl~~l~~~~~~Lk~L~Ls~~~isd~~-l~~Ll~~~~~~L 606 (715)
++|||+.|. +....-.... .|. |+.|.|+++ .++. .|+. .+.+|+.||+++|-+.+.. +..+-.. ..|
T Consensus 212 khLDlsyN~-L~~vp~l~~~-gc~-L~~L~lrnN-~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLwsL--s~L 281 (1096)
T KOG1859|consen 212 KHLDLSYNC-LRHVPQLSMV-GCK-LQLLNLRNN-ALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWSL--SSL 281 (1096)
T ss_pred cccccccch-hccccccchh-hhh-heeeeeccc-HHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHHH--HHH
Confidence 888888762 3211111111 244 788888774 3332 3333 2577888888887554421 1111100 467
Q ss_pred cEEEeCCCC
Q 005073 607 KELSLNNVR 615 (715)
Q Consensus 607 ~~L~L~~c~ 615 (715)
+.|+|.|++
T Consensus 282 ~~L~LeGNP 290 (1096)
T KOG1859|consen 282 IVLWLEGNP 290 (1096)
T ss_pred HHHhhcCCc
Confidence 777777755
No 49
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.89 E-value=0.0083 Score=39.49 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=17.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHH
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIV 652 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~ 652 (715)
|++|++|+|++|.+|||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777777665
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.77 E-value=0.015 Score=64.31 Aligned_cols=135 Identities=19% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
..++.|++.+|. ++. +. ... ++|+.|.|++|.. +.. ++..+ .++|+.|.|++|..+..
T Consensus 52 ~~l~~L~Is~c~-L~s-----LP-~LP-~sLtsL~Lsnc~n-Lts------LP~~L--P~nLe~L~Ls~Cs~L~s----- 109 (426)
T PRK15386 52 RASGRLYIKDCD-IES-----LP-VLP-NELTEITIENCNN-LTT------LPGSI--PEGLEKLTVCHCPEISG----- 109 (426)
T ss_pred cCCCEEEeCCCC-Ccc-----cC-CCC-CCCcEEEccCCCC-ccc------CCchh--hhhhhheEccCcccccc-----
Confidence 446677777773 333 11 111 3577777777654 111 11111 13677777776644431
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC-CCCCEEeecCccccCHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL-KHLEVLSVAGIETVTDEFVRG 519 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l-~~Le~L~Ls~~~~isd~~l~~ 519 (715)
-.+.|+.|++.++. ... +. .+|++|+.|.+.++.......+. ..+ ++|++|.+.+|..+.
T Consensus 110 ---LP~sLe~L~L~~n~-~~~--L~----~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~------ 170 (426)
T PRK15386 110 ---LPESVRSLEIKGSA-TDS--IK----NVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII------ 170 (426)
T ss_pred ---cccccceEEeCCCC-Ccc--cc----cCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc------
Confidence 12456667665421 111 11 13456666666432211110000 012 467777777665331
Q ss_pred HHHhcCCCccEEEecCC
Q 005073 520 FVYACGHNMKELILTDC 536 (715)
Q Consensus 520 ll~~~~~~L~~L~Ls~c 536 (715)
+......+|+.|.++.+
T Consensus 171 LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 171 LPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccccccCcEEEeccc
Confidence 01112246777777654
No 51
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.73 E-value=0.021 Score=61.84 Aligned_cols=172 Identities=18% Similarity=0.104 Sum_probs=87.0
Q ss_pred hcCCCCCEEeecCc--cccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCcc----EEEecCCCCCChHH
Q 005073 496 RKLKHLEVLSVAGI--ETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLC----TLDLSNLYKLTDFG 569 (715)
Q Consensus 496 ~~l~~Le~L~Ls~~--~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~----~L~Ls~c~~ltd~g 569 (715)
..+.+.+.|++++- ..+.++.+.. ... .-++..+++.|. +..+.+.++.++ .+.+++ +.++.
T Consensus 359 ~~~i~tkiL~~s~~qlt~VPdEVfea-~~~--~~Vt~VnfskNq------L~elPk~L~~lkelvT~l~lsn-n~isf-- 426 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLTLVPDEVFEA-AKS--EIVTSVNFSKNQ------LCELPKRLVELKELVTDLVLSN-NKISF-- 426 (565)
T ss_pred hhhhhhhhhcccccccccCCHHHHHH-hhh--cceEEEecccch------HhhhhhhhHHHHHHHHHHHhhc-Ccccc--
Confidence 34445666665542 2334443332 111 236677777762 344444333322 233333 34433
Q ss_pred HHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcC---CCccEEEecCCCCCCHH
Q 005073 570 IGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRS---NKLVNLDLSWCRNLSDE 646 (715)
Q Consensus 570 l~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~---~~L~~LdLs~C~~Ltd~ 646 (715)
+..+...+++|..|+|++|-+.+-...... . ..|+.|+|+... . ..+...| ..|+.+-.+. ..|...
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~--l-v~Lq~LnlS~Nr-F-----r~lP~~~y~lq~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGS--L-VRLQTLNLSFNR-F-----RMLPECLYELQTLETLLASN-NQIGSV 496 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhh--h-hhhheecccccc-c-----ccchHHHhhHHHHHHHHhcc-cccccc
Confidence 233445579999999999765552222111 1 469999998752 2 1222222 2344443443 334322
Q ss_pred HHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCCCCCCCeeecCCCC
Q 005073 647 ALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSPVLEHVKVPDFH 702 (715)
Q Consensus 647 ~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp~L~~L~l~~~~ 702 (715)
....+ .++.+|..|++.+. .+...+. .|..|..|++|++.+.+
T Consensus 497 d~~~l-~nm~nL~tLDL~nN-dlq~IPp-----------~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 497 DPSGL-KNMRNLTTLDLQNN-DLQQIPP-----------ILGNMTNLRHLELDGNP 539 (565)
T ss_pred ChHHh-hhhhhcceeccCCC-chhhCCh-----------hhccccceeEEEecCCc
Confidence 22222 24678999999874 4544443 24456667777766644
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.40 E-value=0.0037 Score=64.17 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=35.6
Q ss_pred CCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCcc
Q 005073 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (715)
Q Consensus 445 ~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~ 510 (715)
+|+|++|.++.+..-...++..++..+ ++|++|++++|.. ....-+..+..+++|.+|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki-~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKI-KDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC-CceeEEeecCCcc-ccccccchhhhhcchhhhhcccCC
Confidence 466666776665443444566666665 6677777766642 212223345555566666665553
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.39 E-value=0.016 Score=38.12 Aligned_cols=24 Identities=50% Similarity=0.729 Sum_probs=16.3
Q ss_pred CCCccEEEecCCCCCChHHHHHHH
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLA 574 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~ 574 (715)
|++|+.|+|++|..++|.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 566777777777777777666655
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.007 Score=62.58 Aligned_cols=113 Identities=26% Similarity=0.335 Sum_probs=71.4
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
.+.+.|++.+| +|+|.++. ..+|.|+.|.|+- +.|+. +..+. .|..|+.|+|..|.|.+-.-..++... ++
T Consensus 19 ~~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSv-NkIss--L~pl~-rCtrLkElYLRkN~I~sldEL~YLknl-ps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSV-NKISS--LAPLQ-RCTRLKELYLRKNCIESLDELEYLKNL-PS 89 (388)
T ss_pred HHhhhhcccCC-CccHHHHH---HhcccceeEEeec-ccccc--chhHH-HHHHHHHHHHHhcccccHHHHHHHhcC-ch
Confidence 46778888888 57776643 3578888888876 46654 33333 478888888888888774444444433 78
Q ss_pred ccEEEeCCCCCCCH---HHHHHHHhcCCCccEEEecCCCCCCHHHHHH
Q 005073 606 LKELSLNNVRKVAD---NTALSLAKRSNKLVNLDLSWCRNLSDEALGL 650 (715)
Q Consensus 606 L~~L~L~~c~~I~d---~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~ 650 (715)
|+.|.|..++..+. ..-....+.+|+|+.||=- .+|.+-+..
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~ 134 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEE 134 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHH
Confidence 88888876554332 2222344567888888622 255554443
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.87 E-value=0.0042 Score=49.65 Aligned_cols=60 Identities=32% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNA 589 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~ 589 (715)
|+|+.|++++| .++...-..+ ..+++|++|+|++| .++...-. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 35666666665 3443222122 23566666666653 44332111 23346666666666654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.0094 Score=61.69 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=63.6
Q ss_pred CCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHH
Q 005073 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (715)
Q Consensus 388 ~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L 467 (715)
+.+.++|++++|+ ++|. .+...++.|+.|.|+- +.|+. +.. +..|.+|++|.|..+..-.-..+..|
T Consensus 18 l~~vkKLNcwg~~--L~DI-------sic~kMp~lEVLsLSv-NkIss--L~p-l~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDI-------SICEKMPLLEVLSLSV-NKISS--LAP-LQRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCC--ccHH-------HHHHhcccceeEEeec-ccccc--chh-HHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3567788888887 5664 3456778888888876 34433 222 35678888888877533333344555
Q ss_pred HHHhcCCceEEEecCCCCchhhh---hHHHhhcCCCCCEEe
Q 005073 468 ADKLGSFIQELYINDCQSLNAML---ILPALRKLKHLEVLS 505 (715)
Q Consensus 468 ~~~~~~~L~~L~Ls~c~~l~~~~---l~~~L~~l~~Le~L~ 505 (715)
.+. ++|+.|.|..|+.....+ =...+..||+|+.|+
T Consensus 85 knl--psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNL--PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcC--chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 443 778888887766443332 123466777777775
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.43 E-value=0.0076 Score=61.90 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=16.0
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSN 561 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~ 561 (715)
++|+.|.++.|..-....+..++..||+|++|++++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 455555555442122223334444445555555554
No 58
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.45 E-value=0.0028 Score=61.07 Aligned_cols=125 Identities=27% Similarity=0.411 Sum_probs=74.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC-CCCHHHHHHHHhhCCCCCEEeeccCCCCChHHH-HH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC-RISDVGFKALVTSAPALRSINLSQCSLLSSTSV-DI 466 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~-~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l-~~ 466 (715)
.+|+.|+++... + ..++..+..+++|+.|++.-+. .+...++ ..+|.|+.|++.++. +....+ ..
T Consensus 56 ~nlevln~~nnq--i------e~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldltynn-l~e~~lpgn 122 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ--I------EELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNN-LNENSLPGN 122 (264)
T ss_pred hhhhhhhcccch--h------hhcChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhccccc-cccccCCcc
Confidence 578888886643 1 2345556778888888886521 1222333 345889999998853 322211 11
Q ss_pred HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCH-HHHHHHHHhcCCCccEEEecCC
Q 005073 467 LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD-EFVRGFVYACGHNMKELILTDC 536 (715)
Q Consensus 467 L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd-~~l~~ll~~~~~~L~~L~Ls~c 536 (715)
+.-. ..|+-|+++++. ...+.+.+.++++|+.|.+.....++- ..+..+ .+|++|++.++
T Consensus 123 ff~m--~tlralyl~dnd---fe~lp~dvg~lt~lqil~lrdndll~lpkeig~l-----t~lrelhiqgn 183 (264)
T KOG0617|consen 123 FFYM--TTLRALYLGDND---FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL-----TRLRELHIQGN 183 (264)
T ss_pred hhHH--HHHHHHHhcCCC---cccCChhhhhhcceeEEeeccCchhhCcHHHHHH-----HHHHHHhcccc
Confidence 1111 457777887774 122456688899999999877544331 122222 67888888887
No 59
>PLN03150 hypothetical protein; Provisional
Probab=92.66 E-value=0.19 Score=59.44 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred ceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 005073 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (715)
Q Consensus 475 L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L 554 (715)
++.|+|+++..... +...+..+++|+.|+|+++. +.. .+...+. .+++|+.|+|++| .++......+. .+++|
T Consensus 420 v~~L~L~~n~L~g~--ip~~i~~L~~L~~L~Ls~N~-l~g-~iP~~~~-~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGF--IPNDISKLRHLQSINLSGNS-IRG-NIPPSLG-SITSLEVLDLSYN-SFNGSIPESLG-QLTSL 492 (623)
T ss_pred EEEEECCCCCcccc--CCHHHhCCCCCCEEECCCCc-ccC-cCChHHh-CCCCCCEEECCCC-CCCCCCchHHh-cCCCC
Confidence 55666666542111 23345566666666666542 211 1111111 1256666666665 34333223333 35556
Q ss_pred cEEEecCC
Q 005073 555 CTLDLSNL 562 (715)
Q Consensus 555 ~~L~Ls~c 562 (715)
+.|+|++|
T Consensus 493 ~~L~Ls~N 500 (623)
T PLN03150 493 RILNLNGN 500 (623)
T ss_pred CEEECcCC
Confidence 66666554
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.64 E-value=0.042 Score=43.81 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=5.6
Q ss_pred CCccEEEecCC
Q 005073 526 HNMKELILTDC 536 (715)
Q Consensus 526 ~~L~~L~Ls~c 536 (715)
++|++|++++|
T Consensus 49 ~~L~~L~l~~N 59 (61)
T PF13855_consen 49 PNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS
T ss_pred CCCCEEeCcCC
Confidence 45555555544
No 61
>PLN03150 hypothetical protein; Provisional
Probab=92.59 E-value=0.19 Score=59.59 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=30.7
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
++|+.|+|++| .++......+. .+++|+.|+|++| .++...-. ....+++|+.|+|++|.+.
T Consensus 442 ~~L~~L~Ls~N-~l~g~iP~~~~-~l~~L~~LdLs~N-~lsg~iP~-~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 442 RHLQSINLSGN-SIRGNIPPSLG-SITSLEVLDLSYN-SFNGSIPE-SLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCEEECCCC-cccCcCChHHh-CCCCCCEEECCCC-CCCCCCch-HHhcCCCCCEEECcCCccc
Confidence 56666666665 24322222232 3566666666664 33321111 2224566666666666543
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.46 E-value=0.15 Score=38.20 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=7.4
Q ss_pred cCCCccEEEccCCCCC
Q 005073 576 GCQAIQTLKLCRNAFS 591 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~~is 591 (715)
.|++|+.|++++|.++
T Consensus 22 ~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 22 NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TCTTSSEEEETSSCCS
T ss_pred CCCCCCEEEecCCCCC
Confidence 3444444444444443
No 63
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.29 E-value=0.0031 Score=60.85 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=15.6
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEee
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSV 506 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~L 506 (715)
.+|+.|+++++. +.. +...++.++.|++|++
T Consensus 56 ~nlevln~~nnq-ie~--lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNV 86 (264)
T ss_pred hhhhhhhcccch-hhh--cChhhhhchhhhheec
Confidence 455666665553 221 2334555555555555
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.81 E-value=0.2 Score=55.51 Aligned_cols=170 Identities=25% Similarity=0.267 Sum_probs=85.2
Q ss_pred CCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcC
Q 005073 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACG 525 (715)
Q Consensus 446 p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~ 525 (715)
+.++.|++.+.....-.....+ ..++|+.|+++++.... +...+..+++|+.|++..+. +.+-.. ... ..
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~---~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~-l~~l~~--~~~-~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGL---LKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFND-LSDLPK--LLS-NL 185 (394)
T ss_pred cceeEEecCCcccccCcccccc---chhhcccccccccchhh---hhhhhhccccccccccCCch-hhhhhh--hhh-hh
Confidence 6788888877532111111111 10167888888775222 12346777888888887653 322111 110 12
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH--HHHHHHHHhCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD--EAIAAFLETAG 603 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd--~~l~~Ll~~~~ 603 (715)
++|+.|+++++ .+++.... ......|+.|.+++...+... .....+..+..|.+.++.+.+ ..+.. .
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~~~~~~~~~-----l 254 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPE--IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLEDLPESIGN-----L 254 (394)
T ss_pred hhhhheeccCC-ccccCchh--hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCceeeeccchhcc-----c
Confidence 67888888876 34432211 112334777777764222211 111234555566666665543 22221 1
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 005073 604 EPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWC 640 (715)
Q Consensus 604 ~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C 640 (715)
+.|+.|+++++ .+++... .....+|+.|++++.
T Consensus 255 ~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 255 SNLETLDLSNN-QISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred cccceeccccc-ccccccc---ccccCccCEEeccCc
Confidence 45777777764 3332211 234567777777774
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.01 E-value=0.29 Score=48.86 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=61.9
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCH--HHHHHHHHhcCCCccEEEecCCCCCCh-HHHHHHHh
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD--EFVRGFVYACGHNMKELILTDCVKLTD-FSLKVIAE 549 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd--~~l~~ll~~~~~~L~~L~Ls~c~~Ltd-~~L~~L~~ 549 (715)
.+...++|+++.... ...+..++.|..|.+.+. .++. ..+.. ..++|+.|.|.+|+ |.. ..+..++
T Consensus 42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nN-rIt~I~p~L~~----~~p~l~~L~LtnNs-i~~l~dl~pLa- 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNN-RITRIDPDLDT----FLPNLKTLILTNNS-IQELGDLDPLA- 110 (233)
T ss_pred cccceecccccchhh----cccCCCccccceEEecCC-cceeeccchhh----hccccceEEecCcc-hhhhhhcchhc-
Confidence 456677777765322 223566677777777654 2321 12222 23789999998874 322 2344444
Q ss_pred cCCCccEEEecCCCCCChH-HH-HHHHhcCCCccEEEccCCCC
Q 005073 550 TCPRLCTLDLSNLYKLTDF-GI-GYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~-gl-~~l~~~~~~Lk~L~Ls~~~i 590 (715)
.||.|++|.+-++ .++.. .. .++...+|+|+.||+..-..
T Consensus 111 ~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 111 SCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence 4889999988774 34332 11 12334568888888876533
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.81 E-value=0.4 Score=53.17 Aligned_cols=173 Identities=23% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCC-CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSL-PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l-~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L 467 (715)
+.++.|.+.... +.+ +......+ ++|+.|++++ +.+.... .-...+++|+.|++++|. +.+... .
T Consensus 116 ~~l~~L~l~~n~--i~~------i~~~~~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~--~ 181 (394)
T COG4886 116 TNLTSLDLDNNN--ITD------IPPLIGLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFND-LSDLPK--L 181 (394)
T ss_pred cceeEEecCCcc--ccc------Cccccccchhhcccccccc-cchhhhh--hhhhccccccccccCCch-hhhhhh--h
Confidence 456666665543 121 12222333 2677777766 3333321 113456777777777753 222111 1
Q ss_pred HHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 005073 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (715)
Q Consensus 468 ~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L 547 (715)
... .+.|+.|+++++.. .. +...+....+|+.|.+.+...+..... +. ...++..|.+.++. +.+. ...
T Consensus 182 ~~~-~~~L~~L~ls~N~i-~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~---~~-~~~~l~~l~l~~n~-~~~~--~~~ 250 (394)
T COG4886 182 LSN-LSNLNNLDLSGNKI-SD--LPPEIELLSALEELDLSNNSIIELLSS---LS-NLKNLSGLELSNNK-LEDL--PES 250 (394)
T ss_pred hhh-hhhhhheeccCCcc-cc--CchhhhhhhhhhhhhhcCCcceecchh---hh-hcccccccccCCce-eeec--cch
Confidence 101 15677777776642 11 111122334466666655421111110 00 11445555544442 2210 111
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 548 AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 548 ~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
...+++|+.|+++++ .+++... .....+|+.|+++++.+
T Consensus 251 ~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 251 IGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hccccccceeccccc-ccccccc---ccccCccCEEeccCccc
Confidence 223455666666653 4444221 22345666666666544
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=88.31 E-value=0.45 Score=35.54 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCc
Q 005073 630 NKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITN 671 (715)
Q Consensus 630 ~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~ 671 (715)
++|++|+++++ .|++ +......|++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCC
Confidence 46777777775 3654 3332346777777777776 3554
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.85 E-value=0.37 Score=30.83 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=14.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHH
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIV 652 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~ 652 (715)
|++|++|+|++|. |++.++..|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4677778887765 7777777664
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.96 E-value=0.47 Score=30.33 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=7.8
Q ss_pred CCccEEEccCCCCCHHHHHH
Q 005073 578 QAIQTLKLCRNAFSDEAIAA 597 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~ 597 (715)
++|+.|+|++|.|+++++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34444444444444444433
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.14 E-value=0.15 Score=57.17 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.8
Q ss_pred CCCccEEEccCCCC
Q 005073 577 CQAIQTLKLCRNAF 590 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~i 590 (715)
+..+..|++..+.+
T Consensus 254 ~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRI 267 (414)
T ss_pred cccccccchhhccc
Confidence 45566666665544
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=79.09 E-value=0.87 Score=45.57 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=16.1
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccC
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c 456 (715)
.+++.|..|.|.. +.|+...- .+...+|+|..|.|.++
T Consensus 61 p~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNN 98 (233)
T ss_pred CCccccceEEecC-Ccceeecc-chhhhccccceEEecCc
Confidence 4445555555554 33332110 11222355555555554
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=77.46 E-value=0.69 Score=51.87 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCCh-HHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTD-FGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGE 604 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd-~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~ 604 (715)
.+|+.|++.++. |. .+..+...+++|+.|+|++ +.|++ .++.. ++.|+.|++.+|.|.+..-... ..
T Consensus 95 ~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~----l~ 162 (414)
T KOG0531|consen 95 KSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSF-NKITKLEGLST----LTLLKELNLSGNLISDISGLES----LK 162 (414)
T ss_pred cceeeeeccccc-hh--hcccchhhhhcchheeccc-cccccccchhh----ccchhhheeccCcchhccCCcc----ch
Confidence 789999998873 32 2222123588999999998 46765 23332 4569999999998766322111 26
Q ss_pred CccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 605 PLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 605 ~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
.|+.++++++. +.+..-.. ...+.+|+.|.+.++.
T Consensus 163 ~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 78888888863 33221101 3557889999998864
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.38 E-value=4.8 Score=45.98 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=16.0
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSN 561 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~ 561 (715)
+.+..|.|++|.-..-..+..++...|+|..|+|++
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 445555555543222223334444444555555544
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.01 E-value=4.4 Score=27.04 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=15.4
Q ss_pred CCccEEEccCCCCCHHHHHHHHH
Q 005073 578 QAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
++|+.|+|++|.+.++|..++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45677777777777777666543
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=74.31 E-value=1.7 Score=41.06 Aligned_cols=13 Identities=31% Similarity=0.375 Sum_probs=5.7
Q ss_pred CCCccEEEccCCC
Q 005073 577 CQAIQTLKLCRNA 589 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~ 589 (715)
++.|+.|+++.|.
T Consensus 99 m~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 99 MPALRSLNLRFNP 111 (177)
T ss_pred hHHhhhcccccCc
Confidence 3444444444443
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.28 E-value=4 Score=27.25 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhc
Q 005073 630 NKLVNLDLSWCRNLSDEALGLIVDS 654 (715)
Q Consensus 630 ~~L~~LdLs~C~~Ltd~~l~~L~~~ 654 (715)
++|++|+|+++. +++.|...+++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 467777777743 777777766653
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=63.99 E-value=2.6 Score=39.90 Aligned_cols=107 Identities=20% Similarity=0.158 Sum_probs=56.7
Q ss_pred ceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 005073 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (715)
Q Consensus 475 L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L 554 (715)
+..|+|+.|...--......+....+|...+|++.. +. ..-.. +...++.++.|+++++ .|++...+ ++ .+|.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk-~fp~k-ft~kf~t~t~lNl~~n-eisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FK-KFPKK-FTIKFPTATTLNLANN-EISDVPEE-LA-AMPAL 102 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hh-hCCHH-Hhhccchhhhhhcchh-hhhhchHH-Hh-hhHHh
Confidence 556666666543222234455555666666666532 11 01111 1222367788888876 46665544 44 47888
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 555 ~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
+.|+++.+ .+... ..-++. +.+|-.|+..++.+
T Consensus 103 r~lNl~~N-~l~~~-p~vi~~-L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 103 RSLNLRFN-PLNAE-PRVIAP-LIKLDMLDSPENAR 135 (177)
T ss_pred hhcccccC-ccccc-hHHHHH-HHhHHHhcCCCCcc
Confidence 88888874 33321 122222 45666666666644
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.90 E-value=16 Score=41.97 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=45.5
Q ss_pred HHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCC--CCChHHHHHHHHHhcCCceEEEecCCCCchh
Q 005073 412 LASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCS--LLSSTSVDILADKLGSFIQELYINDCQSLNA 488 (715)
Q Consensus 412 l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~--~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~ 488 (715)
+...-.+++.+..|+|+++....-..+..+....|+|..|+|+++. .-....+..+. +..|++|-+.+|+..+.
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k---~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK---GLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc---CCCHHHeeecCCccccc
Confidence 3444566777777777775444555666777777888888888862 12222333332 24577888887765443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=56.83 E-value=7.6 Score=22.76 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=4.3
Q ss_pred CccEEEEecC
Q 005073 657 SLRMLKLFGC 666 (715)
Q Consensus 657 ~L~~L~L~gC 666 (715)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4444444444
No 80
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=54.40 E-value=24 Score=26.33 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHhhcc--CCCCCCCCCHHHHHHHHH
Q 005073 307 IIPSLKELSMKILVQNAD--AITSLEHVPDALRHKLSF 342 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~--~l~~L~~lp~~~~~kL~~ 342 (715)
.+++||+||-..|..+.. .+..| .+|..+...+..
T Consensus 2 k~~SLQ~LCR~~I~~~t~~~~I~~L-PLP~~Lk~yLke 38 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPVYLIDKL-PLPVSIKSHLKS 38 (43)
T ss_pred ccccHHHHHHHHHHHhCCcchhhhC-CCCHHHHHHHHh
Confidence 579999999999988765 34344 567777776544
No 81
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=46.98 E-value=39 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005073 307 IIPSLKELSMKILVQNADAITSLEHVPDALRHK 339 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~~l~~L~~lp~~~~~k 339 (715)
.+|+||.||-..|-.+......+..+|..+...
T Consensus 2 ~v~SLQHLCR~~In~~~~~~~~~~~LP~~Lk~y 34 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSYEKRTQLPLPIKEF 34 (42)
T ss_pred CcccHHHHHHHHHHHhcCcccchhhccHHHHHH
Confidence 479999999999977766544556777754433
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=41.98 E-value=6.9 Score=44.97 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=60.4
Q ss_pred hcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCC-ChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHH
Q 005073 416 LNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLL-SSTSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (715)
Q Consensus 416 ~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l-~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~ 494 (715)
..++..|+.|+|+. +.++..... -+.--|+.|-++++... -...+. + . ..|..|+.+.|...+ +...
T Consensus 117 i~~L~~lt~l~ls~-NqlS~lp~~---lC~lpLkvli~sNNkl~~lp~~ig-~---~-~tl~~ld~s~nei~s---lpsq 184 (722)
T KOG0532|consen 117 ICNLEALTFLDLSS-NQLSHLPDG---LCDLPLKVLIVSNNKLTSLPEEIG-L---L-PTLAHLDVSKNEIQS---LPSQ 184 (722)
T ss_pred hhhhhHHHHhhhcc-chhhcCChh---hhcCcceeEEEecCccccCCcccc-c---c-hhHHHhhhhhhhhhh---chHH
Confidence 35566777777776 333321111 11234777777775321 112222 1 1 556777777775322 3444
Q ss_pred hhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecC
Q 005073 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSN 561 (715)
Q Consensus 495 L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~ 561 (715)
+..+.+|+.|.+...... .....++ .-.|..||++.| +|+-..+.. ..+..|++|.|.+
T Consensus 185 l~~l~slr~l~vrRn~l~--~lp~El~---~LpLi~lDfScN-kis~iPv~f--r~m~~Lq~l~Len 243 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLE--DLPEELC---SLPLIRLDFSCN-KISYLPVDF--RKMRHLQVLQLEN 243 (722)
T ss_pred hhhHHHHHHHHHhhhhhh--hCCHHHh---CCceeeeecccC-ceeecchhh--hhhhhheeeeecc
Confidence 556666666666543211 1111111 135667777665 343322211 2345666666655
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=39.13 E-value=5.8 Score=45.55 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH--HHHHHHHHhCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD--EAIAAFLETAG 603 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd--~~l~~Ll~~~~ 603 (715)
..|+.|+|+.|. ++.... .+ ..|| |+.|.++++ +++.... .+. ..+.|..|+.+.|.+-. ..+..+
T Consensus 121 ~~lt~l~ls~Nq-lS~lp~-~l-C~lp-Lkvli~sNN-kl~~lp~-~ig-~~~tl~~ld~s~nei~slpsql~~l----- 188 (722)
T KOG0532|consen 121 EALTFLDLSSNQ-LSHLPD-GL-CDLP-LKVLIVSNN-KLTSLPE-EIG-LLPTLAHLDVSKNEIQSLPSQLGYL----- 188 (722)
T ss_pred hHHHHhhhccch-hhcCCh-hh-hcCc-ceeEEEecC-ccccCCc-ccc-cchhHHHhhhhhhhhhhchHHhhhH-----
Confidence 567888888763 322111 11 1244 899999874 5554221 122 46788899999886633 122222
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCC--
Q 005073 604 EPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPD-- 681 (715)
Q Consensus 604 ~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~-- 681 (715)
.+|+.|++.....+. ....++ +-.|..||++. ++|+-- ..-+..+..|++|-|.+.+ ++.-+....-...
T Consensus 189 ~slr~l~vrRn~l~~--lp~El~--~LpLi~lDfSc-Nkis~i--Pv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLED--LPEELC--SLPLIRLDFSC-NKISYL--PVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVH 260 (722)
T ss_pred HHHHHHHHhhhhhhh--CCHHHh--CCceeeeeccc-Cceeec--chhhhhhhhheeeeeccCC-CCCChHHHHhcccee
Confidence 467777776643211 112232 34689999986 557633 3333568899999998765 4333222111112
Q ss_pred -eeEEecCCCCCCCeeecCCCCC
Q 005073 682 -VQIIGLKMSPVLEHVKVPDFHE 703 (715)
Q Consensus 682 -L~~l~L~~cp~L~~L~l~~~~~ 703 (715)
.++|.+..|..=-.+++.....
T Consensus 261 IFKyL~~qA~q~~~a~~~~t~~R 283 (722)
T KOG0532|consen 261 IFKYLSTQACQSGGALDLYTTLR 283 (722)
T ss_pred eeeeecchhccccCCcccccccC
Confidence 3455566664333444444333
No 84
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=39.06 E-value=75 Score=23.76 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhhccC--CCCCCCCCHHHHHHHH
Q 005073 307 IIPSLKELSMKILVQNADA--ITSLEHVPDALRHKLS 341 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~~--l~~L~~lp~~~~~kL~ 341 (715)
.+++||+||-..|..++.. +..+ .+|..+...|.
T Consensus 2 ~~~sLQhLCR~tI~~~~~~~~i~~l-pLP~~LKdyL~ 37 (43)
T cd03735 2 RVRPLQELCRKSIVATFGRENLARI-PLNPVLKDYLK 37 (43)
T ss_pred CccCHHHHHHHHHHHhcCccccccC-cCCHHHHHHHH
Confidence 5789999999999877653 2222 56676666554
No 85
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=34.87 E-value=93 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHhhccC--CCCCCCCCHHHHHHH
Q 005073 307 IIPSLKELSMKILVQNADA--ITSLEHVPDALRHKL 340 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~~--l~~L~~lp~~~~~kL 340 (715)
.+++||.||-..|-+++.. +..| .+|..+...+
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~~~i~~L-pLP~~Lk~yL 36 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRRDLIDQL-PLPRRLKDYL 36 (39)
T ss_pred CCCCHHHHHHHHHHHHccccccccC-CCCHHHHHHH
Confidence 5899999999999887632 2222 4566665544
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.06 E-value=63 Score=36.64 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=43.8
Q ss_pred CccEEEccCCCCCHHH--HHHHHHhCCCCccEEEeCCCCC--CCHH-----HHHHHHhcCCCccEEEecCCCCCCHHHHH
Q 005073 579 AIQTLKLCRNAFSDEA--IAAFLETAGEPLKELSLNNVRK--VADN-----TALSLAKRSNKLVNLDLSWCRNLSDEALG 649 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~--l~~Ll~~~~~~L~~L~L~~c~~--I~d~-----~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~ 649 (715)
.+++|.+..|+...++ +..+.. .++++.+.+.+-.. +-+. .+..+.+..--|..+.++-|. +. .++.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~--s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~-lk-a~l~ 430 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQ--SKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGP-LK-AGLE 430 (553)
T ss_pred eeeEeeccccccccccccccceee--ccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCc-cc-ccHH
Confidence 3888888877654432 222222 25666666654322 1111 111111223457777777765 32 1122
Q ss_pred HHH---hcCCCccEEEEecCCCCCcc
Q 005073 650 LIV---DSCLSLRMLKLFGCSQITNA 672 (715)
Q Consensus 650 ~L~---~~~~~L~~L~L~gC~~lt~~ 672 (715)
.+. .+-+.|.+|+|+|. ...+.
T Consensus 431 s~in~l~stqtl~kldisgn-~mgd~ 455 (553)
T KOG4242|consen 431 SAINKLLSTQTLAKLDISGN-GMGDG 455 (553)
T ss_pred HHHHhhccCcccccccccCC-CcccC
Confidence 221 13567888888873 44444
No 87
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=32.93 E-value=1.1e+02 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 005073 307 IIPSLKELSMKILVQNADAITSLEHVPDALRHKLS 341 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~~l~~L~~lp~~~~~kL~ 341 (715)
.+|+||.||-..|-.+...+..+ .+|..+...+.
T Consensus 2 ~~~sLQHLCR~~I~~~~~~i~~L-pLP~~L~~yL~ 35 (41)
T cd03734 2 SARSLQHLCRLVINRLVTDVDCL-PLPRRMADYLR 35 (41)
T ss_pred CCccHHHHHHHHHHHhcCCcccC-CCCHHHHHHHH
Confidence 47999999999998877655543 56666655543
No 88
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=32.48 E-value=1.2e+02 Score=22.34 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 005073 307 IIPSLKELSMKILVQNADAITSLEHVPDALRHKLS 341 (715)
Q Consensus 307 ~~psL~~LcL~~i~~n~~~l~~L~~lp~~~~~kL~ 341 (715)
.+|+||.||-..|-.....+..+ .+|..+...+.
T Consensus 2 ~~~sLQhLCR~~I~~~~~~i~~L-pLP~~Lk~yL~ 35 (41)
T cd03736 2 STPSLQHLCRITINKCTRQIQEL-PLPTRLKDYLT 35 (41)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcC-CCCHHHHHHHH
Confidence 47899999999887766655553 56776666544
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=31.90 E-value=26 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=7.3
Q ss_pred CccEEEEecCCCCC
Q 005073 657 SLRMLKLFGCSQIT 670 (715)
Q Consensus 657 ~L~~L~L~gC~~lt 670 (715)
+|++|+|++| +++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 3566666665 454
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=29.47 E-value=41 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=11.8
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCC
Q 005073 632 LVNLDLSWCRNLSDEALGLIVDSCL 656 (715)
Q Consensus 632 L~~LdLs~C~~Ltd~~l~~L~~~~~ 656 (715)
|++|.|..+..-.+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555544333334555554443
No 91
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=25.81 E-value=3.4e+02 Score=21.65 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=33.9
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHH-hcCCCCccEEEe
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASS-LNSLPSLTTLSI 427 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~-~~~l~~L~~L~L 427 (715)
..++..|.+.+..+++.+.+..+ +=+.+.|..+. ++...+...+... .+..|+|+.|.+
T Consensus 10 ~~~~~~l~i~~~~~it~~~Ll~~-------nc~~i~l~~~~--~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 10 PRNLEKLSISSSNWITLDDLLNM-------NCKKIELWNSK--FTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred hCCCCEEEEccCCcccHHHHHhc-------CCCEEEEECCC--CCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 34566777777777777766533 33555665544 4554444444433 345667776654
No 92
>PRK13042 superantigen-like protein; Reviewed
Probab=25.08 E-value=99 Score=32.61 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=28.6
Q ss_pred CCCCCCcCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCcccc
Q 005073 10 PPTKPEIEPLKHPANKIEPAT----PARTWDTTRPASSGDDDGGDAGRKR 55 (715)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (715)
|+++|+. |..+|..++.|++ |-.||..|-|.+..+.-||..+-|.
T Consensus 46 ~~~k~~~-~qp~p~~ttp~s~~~~t~qptp~~~tp~~~~~~~pq~~~~~~ 94 (291)
T PRK13042 46 PSTKVEA-PQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQ 94 (291)
T ss_pred CcccccC-CCCCCCCCCCCCCCccCCCCCCCCCCCCccCcCCCCCCchhh
Confidence 4444444 3445666666654 3344777888888888888877664
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=23.40 E-value=2.2e+02 Score=31.06 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcC---CCccEEEecCCCCCCh---HHHHHHHhcCCCccEEEccCCCCCHHHHHHH
Q 005073 525 GHNMKELILTDCVKLTDFSLKVIAETC---PRLCTLDLSNLYKLTD---FGIGYLANGCQAIQTLKLCRNAFSDEAIAAF 598 (715)
Q Consensus 525 ~~~L~~L~Ls~c~~Ltd~~L~~L~~~~---p~L~~L~Ls~c~~ltd---~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~L 598 (715)
-+.|+.++|....+|+...+..+...+ ...+...+.+ ...++ .++..+...++.|++|++.+|-|+..++.++
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~ 275 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMAL 275 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHH
Confidence 355555555555455554444444332 1222222222 11111 2233334455566666666666666555555
Q ss_pred H
Q 005073 599 L 599 (715)
Q Consensus 599 l 599 (715)
+
T Consensus 276 ~ 276 (353)
T KOG3735|consen 276 L 276 (353)
T ss_pred H
Confidence 4
No 94
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=21.02 E-value=2.4e+02 Score=20.86 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCCC--CCCHHHHHHH
Q 005073 306 LIIPSLKELSMKILVQNADAITSLE--HVPDALRHKL 340 (715)
Q Consensus 306 ~~~psL~~LcL~~i~~n~~~l~~L~--~lp~~~~~kL 340 (715)
..+++||.||-..|-+.+.. ..+. .+|..+...+
T Consensus 5 ~~~~sLqhLCR~~I~~~~~~-~~i~~LpLP~~lk~yL 40 (43)
T smart00253 5 SNVPSLQHLCRFTIRRCTRT-DQIKTLPLPPKLKDYL 40 (43)
T ss_pred CCCCCHHHHHHHHHHHHcCC-cCcccCCCCHHHHHHH
Confidence 46899999999999777664 2222 4666665554
No 95
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.75 E-value=1.9e+02 Score=20.97 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHhhcc-----CCCCCCCCCHHHHHHH
Q 005073 308 IPSLKELSMKILVQNAD-----AITSLEHVPDALRHKL 340 (715)
Q Consensus 308 ~psL~~LcL~~i~~n~~-----~l~~L~~lp~~~~~kL 340 (715)
.++|++||-..|-+++. .+..+ .+|..+...+
T Consensus 2 p~sLq~LCR~~Ir~~lg~~~~~~i~~L-pLP~~Lk~yL 38 (41)
T cd03587 2 PRSLQHLCRLAIRRCLGKRRLDLIDKL-PLPPRLKDYL 38 (41)
T ss_pred CcCHHHHHHHHHHHHHCcccccccccC-CCCHHHHHHH
Confidence 68999999998877663 33233 4565555443
Done!