Query 005073
Match_columns 715
No_of_seqs 316 out of 2913
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 5.4E-24 1.9E-28 244.9 26.6 316 362-691 139-524 (592)
2 2p1m_B Transport inhibitor res 99.9 1.2E-23 4E-28 242.0 28.2 316 360-691 129-517 (594)
3 2p1m_B Transport inhibitor res 99.9 2.3E-22 7.8E-27 231.3 30.4 308 361-688 184-539 (594)
4 3ogk_B Coronatine-insensitive 99.9 8.9E-22 3.1E-26 226.4 30.9 308 361-688 192-546 (592)
5 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-19 3.8E-24 202.4 29.9 315 361-690 56-408 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-19 8E-24 199.8 30.2 326 361-703 28-410 (461)
7 2ast_B S-phase kinase-associat 99.8 3.9E-19 1.3E-23 189.8 23.1 295 328-675 8-311 (336)
8 2ast_B S-phase kinase-associat 99.8 5E-17 1.7E-21 173.4 22.9 285 372-683 10-299 (336)
9 2ca6_A RAN GTPase-activating p 99.7 1.7E-16 5.7E-21 173.3 23.0 269 382-664 27-338 (386)
10 2ca6_A RAN GTPase-activating p 99.7 3.8E-16 1.3E-20 170.5 24.4 253 414-673 26-319 (386)
11 4fmz_A Internalin; leucine ric 99.6 8.4E-16 2.9E-20 164.8 14.6 261 361-672 66-326 (347)
12 4fmz_A Internalin; leucine ric 99.6 1.9E-15 6.4E-20 162.0 14.1 277 361-690 44-321 (347)
13 3goz_A Leucine-rich repeat-con 99.5 2.6E-13 9E-18 146.9 22.1 248 389-646 22-299 (362)
14 3goz_A Leucine-rich repeat-con 99.5 2.7E-13 9.4E-18 146.7 19.0 254 412-672 14-299 (362)
15 1o6v_A Internalin A; bacterial 99.5 9.9E-14 3.4E-18 155.3 14.6 244 417-701 131-385 (466)
16 1o6v_A Internalin A; bacterial 99.5 7.4E-14 2.5E-18 156.3 11.4 275 360-690 111-385 (466)
17 2z81_A CD282 antigen, TOLL-lik 99.5 5.2E-14 1.8E-18 160.2 9.2 108 389-508 74-181 (549)
18 3v47_A TOLL-like receptor 5B a 99.5 5.3E-15 1.8E-19 164.4 -0.3 129 552-689 275-404 (455)
19 3v47_A TOLL-like receptor 5B a 99.4 6E-15 2.1E-19 163.9 -0.6 304 360-689 29-380 (455)
20 4ecn_A Leucine-rich repeat pro 99.4 8.3E-14 2.8E-18 167.1 2.6 300 360-689 490-815 (876)
21 3t6q_A CD180 antigen; protein- 99.4 8.3E-15 2.8E-19 169.0 -5.9 312 351-691 244-558 (606)
22 3bz5_A Internalin-J, INLJ; leu 99.4 5.1E-14 1.8E-18 157.7 0.7 202 361-614 42-243 (457)
23 2z7x_B TOLL-like receptor 1, v 99.4 3.1E-13 1.1E-17 152.9 7.0 129 550-688 322-452 (520)
24 2id5_A Lingo-1, leucine rich r 99.4 1.6E-14 5.6E-19 161.8 -3.8 298 361-690 32-330 (477)
25 2id5_A Lingo-1, leucine rich r 99.4 4.3E-14 1.5E-18 158.4 -1.0 273 389-689 32-305 (477)
26 4ecn_A Leucine-rich repeat pro 99.4 2.6E-13 8.9E-18 162.9 5.5 309 361-703 448-818 (876)
27 3o6n_A APL1; leucine-rich repe 99.4 5.9E-14 2E-18 153.2 -0.3 144 526-689 205-348 (390)
28 4eco_A Uncharacterized protein 99.4 6.9E-14 2.4E-18 163.1 -0.1 109 389-509 249-363 (636)
29 2z81_A CD282 antigen, TOLL-lik 99.3 1.6E-12 5.3E-17 148.0 10.9 87 576-666 332-420 (549)
30 3t6q_A CD180 antigen; protein- 99.3 2.3E-14 7.9E-19 165.2 -5.2 275 390-689 255-532 (606)
31 3un9_A NLR family member X1; l 99.3 1.4E-11 4.9E-16 134.1 16.8 175 473-653 72-261 (372)
32 4eco_A Uncharacterized protein 99.3 4E-14 1.4E-18 165.0 -3.9 277 361-665 249-545 (636)
33 3un9_A NLR family member X1; l 99.3 3.8E-11 1.3E-15 130.8 19.5 177 389-573 72-259 (372)
34 3oja_B Anopheles plasmodium-re 99.3 1.6E-13 5.3E-18 158.7 0.2 237 417-691 120-356 (597)
35 2z7x_B TOLL-like receptor 1, v 99.3 1.2E-12 4.2E-17 148.0 7.4 154 524-691 322-479 (520)
36 3rgz_A Protein brassinosteroid 99.3 3.1E-14 1.1E-18 169.5 -6.0 12 551-562 342-353 (768)
37 3vq2_A TLR4, TOLL-like recepto 99.3 9.9E-14 3.4E-18 160.0 -1.9 79 417-509 282-360 (606)
38 3o6n_A APL1; leucine-rich repe 99.3 5.3E-13 1.8E-17 145.6 3.3 281 361-689 45-327 (390)
39 3rgz_A Protein brassinosteroid 99.3 8.4E-14 2.9E-18 165.8 -3.9 36 473-509 318-353 (768)
40 3vq2_A TLR4, TOLL-like recepto 99.3 3.6E-14 1.2E-18 163.6 -7.1 294 362-691 262-556 (606)
41 3o53_A Protein LRIM1, AGAP0063 99.3 4.7E-14 1.6E-18 149.9 -5.9 255 379-674 26-280 (317)
42 3bz5_A Internalin-J, INLJ; leu 99.3 3.3E-13 1.1E-17 151.1 0.6 226 360-642 63-298 (457)
43 2z80_A TOLL-like receptor 2, v 99.3 5.2E-13 1.8E-17 143.7 1.5 257 389-667 52-312 (353)
44 3e4g_A ATP synthase subunit S, 99.3 2.7E-12 9.4E-17 124.4 5.9 92 553-673 62-156 (176)
45 1ziw_A TOLL-like receptor 3; i 99.3 4.8E-13 1.6E-17 156.5 0.3 131 552-689 222-362 (680)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.1E-12 7.3E-17 147.9 4.8 129 550-688 351-481 (562)
47 3oja_B Anopheles plasmodium-re 99.2 1.8E-12 6.1E-17 149.8 4.1 293 361-701 51-355 (597)
48 3o53_A Protein LRIM1, AGAP0063 99.2 2.6E-14 9E-19 151.9 -11.8 249 406-688 20-270 (317)
49 3e4g_A ATP synthase subunit S, 99.2 1.2E-11 4.1E-16 119.9 8.0 109 526-660 61-171 (176)
50 2z80_A TOLL-like receptor 2, v 99.2 3.8E-12 1.3E-16 136.9 4.5 257 419-692 51-313 (353)
51 2z63_A TOLL-like receptor 4, v 99.2 7.8E-14 2.7E-18 159.2 -9.9 155 526-690 373-528 (570)
52 1xku_A Decorin; proteoglycan, 99.2 5.4E-13 1.8E-17 142.1 -3.7 221 389-640 52-273 (330)
53 2z63_A TOLL-like receptor 4, v 99.2 7.4E-13 2.5E-17 151.1 -3.3 71 628-701 419-504 (570)
54 1ziw_A TOLL-like receptor 3; i 99.2 5.7E-12 2E-16 147.3 3.8 313 361-701 25-363 (680)
55 1xku_A Decorin; proteoglycan, 99.2 7.1E-13 2.4E-17 141.2 -3.7 272 361-666 52-329 (330)
56 3j0a_A TOLL-like receptor 5; m 99.2 4.1E-13 1.4E-17 161.5 -6.4 302 359-689 22-371 (844)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.8E-11 6.2E-16 140.1 6.7 125 361-509 52-179 (562)
58 3j0a_A TOLL-like receptor 5; m 99.2 2.3E-13 7.7E-18 163.8 -10.1 298 361-689 48-390 (844)
59 2ft3_A Biglycan; proteoglycan, 99.1 3E-13 1E-17 144.3 -9.9 246 389-667 54-305 (332)
60 4fcg_A Uncharacterized protein 99.1 3.6E-12 1.2E-16 136.3 -2.5 231 418-688 79-309 (328)
61 2ft3_A Biglycan; proteoglycan, 99.1 3.2E-13 1.1E-17 144.1 -10.8 12 654-665 262-273 (332)
62 3oja_A Leucine-rich immune mol 99.1 1.3E-12 4.5E-17 147.4 -6.6 238 389-665 34-271 (487)
63 1ogq_A PGIP-2, polygalacturona 99.1 1.6E-13 5.5E-18 145.7 -13.6 108 389-509 50-159 (313)
64 3oja_A Leucine-rich immune mol 99.1 1.2E-12 4.1E-17 147.8 -7.4 230 406-668 20-249 (487)
65 1wwl_A Monocyte differentiatio 99.1 3.3E-11 1.1E-15 127.6 2.6 115 473-591 149-266 (312)
66 1wwl_A Monocyte differentiatio 99.1 9.1E-11 3.1E-15 124.2 5.9 203 473-689 95-305 (312)
67 1h6u_A Internalin H; cell adhe 99.1 1.4E-10 4.9E-15 122.6 7.4 122 526-667 107-228 (308)
68 3g06_A SSPH2 (leucine-rich rep 99.0 1.7E-10 5.7E-15 133.9 8.2 115 526-667 181-295 (622)
69 4fcg_A Uncharacterized protein 99.0 1.8E-11 6.1E-16 130.9 -0.4 207 473-697 81-294 (328)
70 2z66_A Variable lymphocyte rec 99.0 1.1E-12 3.7E-17 138.2 -10.4 60 389-456 28-88 (306)
71 4glp_A Monocyte differentiatio 99.0 4E-11 1.4E-15 126.7 0.5 86 361-456 64-155 (310)
72 3g06_A SSPH2 (leucine-rich rep 99.0 1.9E-10 6.5E-15 133.4 5.6 234 389-690 61-294 (622)
73 2ra8_A Uncharacterized protein 99.0 1.4E-09 4.9E-14 117.8 12.1 9 389-397 139-147 (362)
74 3zyj_A Leucine-rich repeat-con 99.0 9.9E-12 3.4E-16 138.0 -5.7 227 389-641 64-290 (440)
75 3zyi_A Leucine-rich repeat-con 99.0 2.8E-11 9.6E-16 134.8 -2.6 228 419-667 74-301 (452)
76 2z66_A Variable lymphocyte rec 99.0 7E-12 2.4E-16 131.9 -7.2 230 419-667 27-259 (306)
77 3zyi_A Leucine-rich repeat-con 99.0 1.2E-11 4E-16 137.9 -5.9 227 389-641 75-301 (452)
78 4glp_A Monocyte differentiatio 99.0 2E-10 6.9E-15 121.3 3.7 136 526-671 145-286 (310)
79 3zyj_A Leucine-rich repeat-con 99.0 2.6E-11 9E-16 134.6 -3.5 228 419-667 63-290 (440)
80 1ozn_A Reticulon 4 receptor; N 98.9 4.2E-11 1.4E-15 124.7 -2.9 206 419-641 31-236 (285)
81 1h6u_A Internalin H; cell adhe 98.9 1.1E-09 3.6E-14 115.9 7.5 188 389-641 41-228 (308)
82 1ozn_A Reticulon 4 receptor; N 98.9 1E-10 3.6E-15 121.7 -1.1 206 389-616 32-237 (285)
83 2ra8_A Uncharacterized protein 98.9 7.6E-09 2.6E-13 112.1 12.6 85 577-665 251-339 (362)
84 1jl5_A Outer protein YOPM; leu 98.9 1.5E-09 5.3E-14 121.2 7.2 241 361-671 131-371 (454)
85 1io0_A Tropomodulin; LRR prote 98.9 4.6E-08 1.6E-12 95.6 16.3 128 516-647 27-167 (185)
86 1io0_A Tropomodulin; LRR prote 98.8 4.6E-08 1.6E-12 95.6 15.5 120 493-614 30-161 (185)
87 1jl5_A Outer protein YOPM; leu 98.8 1.1E-09 3.6E-14 122.5 3.9 180 361-591 91-270 (454)
88 4ezg_A Putative uncharacterize 98.8 1.3E-09 4.6E-14 107.2 2.8 105 551-666 87-191 (197)
89 1ogq_A PGIP-2, polygalacturona 98.7 5.4E-11 1.9E-15 126.1 -9.7 249 420-691 50-302 (313)
90 4g8a_A TOLL-like receptor 4; l 98.7 2.4E-10 8.1E-15 131.4 -6.0 109 361-484 76-184 (635)
91 4ezg_A Putative uncharacterize 98.7 7.7E-09 2.6E-13 101.7 5.5 87 495-591 108-194 (197)
92 1h6t_A Internalin B; cell adhe 98.7 1.3E-08 4.3E-13 106.8 6.4 35 628-666 176-210 (291)
93 3rfs_A Internalin B, repeat mo 98.7 1.8E-09 6E-14 111.9 -1.2 194 444-666 39-232 (272)
94 1m9s_A Internalin B; cell inva 98.7 1E-08 3.5E-13 118.5 4.9 171 473-673 43-213 (605)
95 1m9s_A Internalin B; cell inva 98.6 1.6E-08 5.4E-13 117.0 5.5 79 551-641 130-208 (605)
96 2z62_A TOLL-like receptor 4, v 98.6 7E-10 2.4E-14 114.8 -5.6 203 420-640 28-234 (276)
97 1h6t_A Internalin B; cell adhe 98.6 2.4E-08 8.2E-13 104.6 5.8 55 389-456 46-100 (291)
98 2z62_A TOLL-like receptor 4, v 98.6 1E-09 3.6E-14 113.5 -4.7 111 473-591 52-162 (276)
99 3rfs_A Internalin B, repeat mo 98.6 5.3E-09 1.8E-13 108.2 0.3 176 473-667 41-216 (272)
100 2je0_A Acidic leucine-rich nuc 98.5 2E-08 7E-13 93.7 2.2 130 526-664 17-148 (149)
101 2xwt_C Thyrotropin receptor; s 98.5 1.3E-09 4.5E-14 110.3 -6.8 61 526-591 105-169 (239)
102 2o6q_A Variable lymphocyte rec 98.5 3.8E-09 1.3E-13 109.1 -3.6 179 446-640 37-215 (270)
103 2xwt_C Thyrotropin receptor; s 98.5 2.3E-09 7.7E-14 108.6 -6.8 59 389-455 31-89 (239)
104 1p9a_G Platelet glycoprotein I 98.5 5E-09 1.7E-13 109.8 -4.3 201 417-642 7-207 (290)
105 2ell_A Acidic leucine-rich nuc 98.5 1.2E-08 4.2E-13 97.3 -1.3 133 526-667 24-158 (168)
106 2o6q_A Variable lymphocyte rec 98.4 2.9E-08 9.8E-13 102.5 -0.2 83 526-614 133-215 (270)
107 1pgv_A TMD-1, tropomodulin TMD 98.4 2.1E-06 7.2E-11 84.5 13.2 123 516-640 32-167 (197)
108 1pgv_A TMD-1, tropomodulin TMD 98.3 4E-06 1.4E-10 82.5 13.0 125 541-666 30-167 (197)
109 2je0_A Acidic leucine-rich nuc 98.3 2.9E-07 1E-11 85.8 4.4 109 473-590 17-125 (149)
110 1p9a_G Platelet glycoprotein I 98.3 6.5E-08 2.2E-12 101.3 -0.2 199 444-667 8-206 (290)
111 1xeu_A Internalin C; cellular 98.3 1.2E-07 4.1E-12 97.8 1.0 35 628-666 148-182 (263)
112 2ell_A Acidic leucine-rich nuc 98.2 2E-07 6.7E-12 88.8 -0.3 15 627-641 144-158 (168)
113 1xeu_A Internalin C; cellular 98.2 7.6E-07 2.6E-11 91.7 3.5 100 473-590 63-162 (263)
114 3m19_A Variable lymphocyte rec 98.1 2.5E-07 8.4E-12 94.4 -0.4 177 473-667 14-190 (251)
115 3cvr_A Invasion plasmid antige 98.1 1.2E-06 4.1E-11 100.5 4.6 192 420-652 59-251 (571)
116 3m19_A Variable lymphocyte rec 98.1 3.9E-07 1.3E-11 92.9 0.0 157 420-590 35-191 (251)
117 4ay9_X Follicle-stimulating ho 98.1 5.1E-08 1.8E-12 104.7 -7.9 125 553-687 129-253 (350)
118 1dce_A Protein (RAB geranylger 98.0 1.1E-07 3.8E-12 109.1 -6.5 60 526-592 441-500 (567)
119 1a9n_A U2A', U2A'; complex (nu 98.0 1E-06 3.6E-11 84.7 1.2 59 526-590 42-100 (176)
120 3cvr_A Invasion plasmid antige 98.0 2.2E-06 7.6E-11 98.2 2.8 195 437-673 49-246 (571)
121 4g8a_A TOLL-like receptor 4; l 97.9 3.6E-06 1.2E-10 96.4 4.2 199 421-637 53-256 (635)
122 1ds9_A Outer arm dynein; leuci 97.9 1E-06 3.4E-11 86.5 -2.3 79 578-662 93-180 (198)
123 4ay9_X Follicle-stimulating ho 97.9 6.7E-08 2.3E-12 103.8 -11.8 226 389-639 30-255 (350)
124 1a9n_A U2A', U2A'; complex (nu 97.8 6.2E-06 2.1E-10 79.1 2.5 56 389-456 19-74 (176)
125 3sb4_A Hypothetical leucine ri 97.8 4.8E-07 1.7E-11 96.1 -6.7 111 552-674 202-314 (329)
126 3e6j_A Variable lymphocyte rec 97.7 2.1E-06 7.1E-11 86.4 -2.8 131 499-641 40-170 (229)
127 3sb4_A Hypothetical leucine ri 97.7 3.7E-06 1.3E-10 89.2 -1.2 109 577-697 201-313 (329)
128 2o6s_A Variable lymphocyte rec 97.7 2.3E-06 8E-11 84.3 -2.9 13 444-456 50-62 (208)
129 1ds9_A Outer arm dynein; leuci 97.7 1.8E-05 6.1E-10 77.4 3.4 14 443-456 45-58 (198)
130 2o6s_A Variable lymphocyte rec 97.6 3E-06 1E-10 83.5 -3.0 149 498-666 27-175 (208)
131 2xot_A Amphoterin-induced prot 97.6 4.1E-06 1.4E-10 90.2 -2.5 110 473-590 88-201 (361)
132 2v70_A SLIT-2, SLIT homolog 2 97.6 2.8E-06 9.7E-11 84.9 -4.0 133 499-641 32-164 (220)
133 2v9t_B SLIT homolog 2 protein 97.6 3E-06 1E-10 84.7 -3.9 132 499-641 32-163 (220)
134 2xot_A Amphoterin-induced prot 97.5 4.4E-06 1.5E-10 89.9 -3.3 134 473-616 64-201 (361)
135 3e6j_A Variable lymphocyte rec 97.5 1.2E-05 4.2E-10 80.7 -0.0 35 473-509 64-98 (229)
136 2v9t_B SLIT homolog 2 protein 97.5 1.3E-05 4.4E-10 80.1 -0.7 61 526-590 104-164 (220)
137 2v70_A SLIT-2, SLIT homolog 2 97.4 2E-05 6.9E-10 78.7 -1.1 133 526-667 32-164 (220)
138 1dce_A Protein (RAB geranylger 97.0 0.0002 7E-09 81.9 2.2 199 389-611 349-567 (567)
139 2wfh_A SLIT homolog 2 protein 96.7 0.00036 1.2E-08 68.0 1.5 108 473-590 31-138 (193)
140 4b8c_D Glucose-repressible alc 96.7 0.00027 9.1E-09 83.4 -0.0 111 549-672 221-331 (727)
141 1w8a_A SLIT protein; signaling 96.6 0.00026 9E-09 68.8 -0.6 61 526-590 78-138 (192)
142 2o6r_A Variable lymphocyte rec 96.6 0.00023 8E-09 67.9 -1.3 15 627-641 121-135 (177)
143 2o6r_A Variable lymphocyte rec 96.6 0.00056 1.9E-08 65.2 1.3 62 526-591 76-137 (177)
144 4b8c_D Glucose-repressible alc 96.6 0.00028 9.7E-09 83.2 -1.0 59 442-509 220-280 (727)
145 1w8a_A SLIT protein; signaling 96.4 0.00017 5.8E-09 70.2 -3.3 14 628-641 124-137 (192)
146 2wfh_A SLIT homolog 2 protein 96.4 0.00054 1.8E-08 66.8 -0.1 14 628-641 124-137 (193)
147 3rw6_A Nuclear RNA export fact 95.7 0.013 4.5E-07 60.2 6.6 42 550-592 168-210 (267)
148 3rw6_A Nuclear RNA export fact 95.0 0.024 8.2E-07 58.2 5.9 13 417-429 167-179 (267)
149 4fdw_A Leucine rich hypothetic 95.0 0.0035 1.2E-07 68.4 -0.6 13 576-588 269-281 (401)
150 3g39_A Variable lymphocyte rec 93.8 0.0085 2.9E-07 56.8 -0.8 12 629-640 101-112 (170)
151 2r9u_A Variable lymphocyte rec 93.8 0.0087 3E-07 57.1 -0.8 13 629-641 104-116 (174)
152 4fdw_A Leucine rich hypothetic 93.3 0.0064 2.2E-07 66.3 -2.9 125 495-640 222-355 (401)
153 2r9u_A Variable lymphocyte rec 93.1 0.026 9E-07 53.7 1.4 39 551-591 80-118 (174)
154 3g39_A Variable lymphocyte rec 92.3 0.037 1.3E-06 52.3 1.2 35 420-456 30-64 (170)
155 4fs7_A Uncharacterized protein 92.3 0.003 1E-07 68.4 -7.3 34 628-664 318-351 (394)
156 2ifg_A High affinity nerve gro 90.6 0.042 1.4E-06 57.9 -0.4 61 526-591 56-116 (347)
157 2ifg_A High affinity nerve gro 88.4 0.13 4.6E-06 53.9 1.4 101 557-667 13-114 (347)
158 4fs7_A Uncharacterized protein 87.1 0.11 3.8E-06 55.8 -0.2 53 627-684 340-392 (394)
159 4gt6_A Cell surface protein; l 68.6 1.6 5.6E-05 46.5 1.6 100 550-665 263-366 (394)
160 4gt6_A Cell surface protein; l 45.4 9.1 0.00031 40.6 2.5 37 495-536 330-367 (394)
161 3ech_C 25-MER fragment of prot 32.8 20 0.00068 21.7 1.4 14 209-222 4-17 (25)
162 4h09_A Hypothetical leucine ri 23.9 8.1 0.00028 40.6 -2.4 101 525-637 239-340 (379)
163 2jz3_A Suppressor of cytokine 21.6 1.5E+02 0.0052 20.6 4.7 34 308-341 1-34 (40)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=5.4e-24 Score=244.94 Aligned_cols=316 Identities=16% Similarity=0.229 Sum_probs=209.4
Q ss_pred CccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC--CCHHHHH
Q 005073 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACR--ISDVGFK 439 (715)
Q Consensus 362 ~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~--lsd~~l~ 439 (715)
++++|++.+|..++...+..+...| ++|++|+|++|. +.+.. ..++..+...+++|++|+|+++.. ++...+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~--~~~~~-~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHC--RKIKTLLMEESS--FSEKD-GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHC--TTCSEEECTTCE--EECCC-SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhC--CCCCEEECcccc--ccCcc-hhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 4788888888877777888787787 788888888875 22221 123445556677888888876432 3466677
Q ss_pred HHHhhCCCCCEEeeccCCCCC-----------------------------------------------hHHHHHHHHHhc
Q 005073 440 ALVTSAPALRSINLSQCSLLS-----------------------------------------------STSVDILADKLG 472 (715)
Q Consensus 440 ~L~~~~p~L~~L~Ls~c~~l~-----------------------------------------------~~~l~~L~~~~~ 472 (715)
.++..+++|+.|++++|.... ...+..+...+
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~- 292 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA- 292 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG-
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc-
Confidence 777777888888777753111 11111122222
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecC----------CCCCChH
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTD----------CVKLTDF 542 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~----------c~~Ltd~ 542 (715)
++|++|+|++|. ++...+...+..+++|++|++. ..+.+..+..+...+ ++|++|+|++ |..+++.
T Consensus 293 ~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCccCHH
Confidence 567777777776 5554444556777777777776 345566666555444 6788888874 6677777
Q ss_pred HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEcc----CCCCCH----HHHHHHHHhCCCCccEEEeCCC
Q 005073 543 SLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLC----RNAFSD----EAIAAFLETAGEPLKELSLNNV 614 (715)
Q Consensus 543 ~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls----~~~isd----~~l~~Ll~~~~~~L~~L~L~~c 614 (715)
.+..+...|++|++|++ +|+.+++.++..++..|++|+.|+|+ .+.+++ .++..++.. +++|++|+|+.|
T Consensus 369 ~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~ 446 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECC
T ss_pred HHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecC
Confidence 77777777778888877 45677777777777777778887775 445554 456665554 367777777665
Q ss_pred C-CCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC--CCCCeeEEecCCCC
Q 005073 615 R-KVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH--SNPDVQIIGLKMSP 691 (715)
Q Consensus 615 ~-~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~--~~~~L~~l~L~~cp 691 (715)
. .+++..+..++..+++|++|+|++|. +++.++..+..+|++|++|+|++|. +++.++... .+++|+.+.++.|+
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 5 36777777777777788888887764 7777777777777888888888876 666544332 45666666665554
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-23 Score=242.02 Aligned_cols=316 Identities=20% Similarity=0.290 Sum_probs=198.2
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC-CCCHHHH
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC-RISDVGF 438 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~-~lsd~~l 438 (715)
.+++++|++.+|..++...+..++..| ++|++|+|++|. +++.. ..++..+...+++|++|+|++|. .+++..+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~--i~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATC--RNLKELDLRESD--VDDVS-GHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHC--TTCCEEECTTCE--EECCC-GGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhC--CCCCEEeCcCCc--cCCcc-hHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 367888999988778888888888888 888888888876 22211 11233344566777777777754 4666667
Q ss_pred HHHHhhCCCCCEEeeccCCCCCh----------------------------------------------------HHHHH
Q 005073 439 KALVTSAPALRSINLSQCSLLSS----------------------------------------------------TSVDI 466 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~----------------------------------------------------~~l~~ 466 (715)
..++..+++|++|+|++|..+.. ..+..
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 77666677777777776632111 11111
Q ss_pred HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEe--------cCCCC
Q 005073 467 LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELIL--------TDCVK 538 (715)
Q Consensus 467 L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~L--------s~c~~ 538 (715)
+...+ ++|++|+|++|. +++..+...+..+++|++|++.++ +.+..+..+...+ ++|++|+| ..|..
T Consensus 284 ~~~~~-~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 284 VYSVC-SRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GHHHH-TTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSC
T ss_pred HHHhh-CCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCC
Confidence 11122 567777777776 555445555667777777777765 4555555554433 67777777 33456
Q ss_pred CChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEcc--C----CCCC----HHHHHHHHHhCCCCccE
Q 005073 539 LTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLC--R----NAFS----DEAIAAFLETAGEPLKE 608 (715)
Q Consensus 539 Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls--~----~~is----d~~l~~Ll~~~~~~L~~ 608 (715)
+++..+..+...|++|+.|.+ +|+.+++.++..++..|++|+.|+|+ + +.++ +.++..++..+ ++|+.
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~L~~ 436 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC-KDLRR 436 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC-TTCCE
T ss_pred CCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC-CCccE
Confidence 777777666666777777744 34567776666666666777777776 2 4555 55666555443 56777
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC--CCCCeeEEe
Q 005073 609 LSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH--SNPDVQIIG 686 (715)
Q Consensus 609 L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~--~~~~L~~l~ 686 (715)
|+|++ .+++.++..++..+++|+.|+|++|. +++.++..++.+|++|+.|+|++|.. ++.++... .+++|+.+.
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW 512 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence 77755 56666666666666777777777654 66777766666677777777777653 55444321 345555555
Q ss_pred cCCCC
Q 005073 687 LKMSP 691 (715)
Q Consensus 687 L~~cp 691 (715)
+..|+
T Consensus 513 l~~~~ 517 (594)
T 2p1m_B 513 MSSCS 517 (594)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 55553
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.3e-22 Score=231.28 Aligned_cols=308 Identities=19% Similarity=0.246 Sum_probs=245.5
Q ss_pred CCccEEEEcCCC-CCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC--------
Q 005073 361 GSPTEIRLRDCS-WLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC-------- 431 (715)
Q Consensus 361 ~~L~~L~L~~c~-~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~-------- 431 (715)
+++++|++.+|. .++...+..+...| ++|++|+|.+|.. +. .+......+++|++|.+..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~--~~L~~L~L~~~~~-~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRC--PNLKSLKLNRAVP-LE------KLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHC--TTCCEEECCTTSC-HH------HHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhC--CCCcEEecCCCCc-HH------HHHHHHhcCCcceEcccccccCccchhhH
Confidence 478889998886 67888888888887 8999999988742 11 134455566777777654332
Q ss_pred --------------------CCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhh
Q 005073 432 --------------------RISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLI 491 (715)
Q Consensus 432 --------------------~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l 491 (715)
.+....+..++..+++|++|+|++|. +++..+..+...+ ++|+.|++++| +.+.++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~-~~L~~L~l~~~--~~~~~l 330 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQC-PKLQRLWVLDY--IEDAGL 330 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTC-TTCCEEEEEGG--GHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcC-CCcCEEeCcCc--cCHHHH
Confidence 23333444445567999999999987 8888888777666 89999999998 555555
Q ss_pred HHHhhcCCCCCEEee--------cCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEec---
Q 005073 492 LPALRKLKHLEVLSV--------AGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLS--- 560 (715)
Q Consensus 492 ~~~L~~l~~Le~L~L--------s~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls--- 560 (715)
......+++|+.|++ .++..+++..+..+...+ ++|+.|.+.. ..+++..+..++..|++|+.|+|.
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 555667999999999 445678888888776555 8999997755 479999999998889999999999
Q ss_pred --CCCCCC----hHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccE
Q 005073 561 --NLYKLT----DFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVN 634 (715)
Q Consensus 561 --~c~~lt----d~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~ 634 (715)
+|+.++ +.++..++..|++|+.|+|++ .+++.++..+... .++|+.|+|++| .+++.++..++..|++|+.
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~-~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY-AKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH-CTTCCEEEEESC-CSSHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh-chhccEeeccCC-CCcHHHHHHHHhcCCCcCE
Confidence 788998 789999999999999999987 8999988887663 489999999997 5899999988888999999
Q ss_pred EEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC--CCCCeeEEecC
Q 005073 635 LDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH--SNPDVQIIGLK 688 (715)
Q Consensus 635 LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~--~~~~L~~l~L~ 688 (715)
|+|++|. +++.++..++..|++|+.|+|++|+. +..++... .+|.|++..+.
T Consensus 486 L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 486 LEIRDCP-FGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred EECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence 9999987 69999998888899999999999975 77766543 56777665554
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=8.9e-22 Score=226.43 Aligned_cols=308 Identities=16% Similarity=0.210 Sum_probs=240.2
Q ss_pred CCccEEEEcCCCC--CCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC------
Q 005073 361 GSPTEIRLRDCSW--LTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACR------ 432 (715)
Q Consensus 361 ~~L~~L~L~~c~~--L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~------ 432 (715)
+.+++|++.++.. +....+..++..| ++|++|+|..|.. .. +......+++|++|.++.+..
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~--~~------l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFEI--LE------LVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCBG--GG------GHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCccH--HH------HHHHHhhhhHHHhhcccccccccchHH
Confidence 5677777765542 3566777777777 7788888877642 21 123334456666666642110
Q ss_pred ------------------CCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHH
Q 005073 433 ------------------ISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (715)
Q Consensus 433 ------------------lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~ 494 (715)
+....+..++..+++|++|+|++|. +++..+..+...+ ++|+.|+|+++ +.+.++...
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~-~~L~~L~L~~~--~~~~~l~~~ 337 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC-PNLEVLETRNV--IGDRGLEVL 337 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC-TTCCEEEEEGG--GHHHHHHHH
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC-cCCCEEeccCc--cCHHHHHHH
Confidence 1223344556678999999999987 8888776666665 89999999943 555556666
Q ss_pred hhcCCCCCEEeecC----------ccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEec---C
Q 005073 495 LRKLKHLEVLSVAG----------IETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLS---N 561 (715)
Q Consensus 495 L~~l~~Le~L~Ls~----------~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls---~ 561 (715)
...+++|++|++.+ |..+++..+..+...+ ++|++|+++. ..+++..+..++..|++|+.|++. .
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 78899999999995 8889998888776555 9999999954 579999999999889999999998 4
Q ss_pred CCCCCh----HHHHHHHhcCCCccEEEccCC--CCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEE
Q 005073 562 LYKLTD----FGIGYLANGCQAIQTLKLCRN--AFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNL 635 (715)
Q Consensus 562 c~~ltd----~gl~~l~~~~~~Lk~L~Ls~~--~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~L 635 (715)
|+.+++ .++..+...|++|+.|+|++| .+++.++..+... +++|+.|+|++| .+++.++..++..|++|++|
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS-CTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh-CccceEeeccCC-CCCHHHHHHHHhcCcccCee
Confidence 668886 588888888999999999865 4899888877654 489999999987 59998999998999999999
Q ss_pred EecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC--CCCCeeEEecC
Q 005073 636 DLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH--SNPDVQIIGLK 688 (715)
Q Consensus 636 dLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~--~~~~L~~l~L~ 688 (715)
+|++|. +++.++..++..+++|+.|+|++|. +++.++... .+|.+.+..+.
T Consensus 494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred eccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 999998 9999999998899999999999997 988877654 67887776554
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.1e-19 Score=202.36 Aligned_cols=315 Identities=23% Similarity=0.324 Sum_probs=213.7
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCC--CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDT--KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~--p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
+.+++|++.++. +++..+..++..+.. ++|++|+|++|. +++..+ ..+...+..+++|++|+|+++ .+++.++
T Consensus 56 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~-~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 130 (461)
T 1z7x_W 56 PALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGAGC-GVLSSTLRTLPTLQELHLSDN-LLGDAGL 130 (461)
T ss_dssp TTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGGGH-HHHHHHTTSCTTCCEEECCSS-BCHHHHH
T ss_pred CCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC--CCHHHH-HHHHHHHccCCceeEEECCCC-cCchHHH
Confidence 678888888876 777667666665521 168888888876 554432 234555677888888888884 5777766
Q ss_pred HHHHhh----CCCCCEEeeccCCCCChHHHHHHHH---HhcCCceEEEecCCCCchhhhhH---HHhh-cCCCCCEEeec
Q 005073 439 KALVTS----APALRSINLSQCSLLSSTSVDILAD---KLGSFIQELYINDCQSLNAMLIL---PALR-KLKHLEVLSVA 507 (715)
Q Consensus 439 ~~L~~~----~p~L~~L~Ls~c~~l~~~~l~~L~~---~~~~~L~~L~Ls~c~~l~~~~l~---~~L~-~l~~Le~L~Ls 507 (715)
..+... .++|++|++++| .+++.+...+.. .+ ++|++|++++|. +...++. ..+. .+++|++|+++
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAK-PDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHC-TTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhC-CCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEcc
Confidence 665543 457888888886 455544333332 23 688888888886 4443222 2222 35688888888
Q ss_pred CccccCHHHH---HHHHHhcCCCccEEEecCCCCCChHHHHHHHh----cCCCccEEEecCCCCCChHHHHHHH---hcC
Q 005073 508 GIETVTDEFV---RGFVYACGHNMKELILTDCVKLTDFSLKVIAE----TCPRLCTLDLSNLYKLTDFGIGYLA---NGC 577 (715)
Q Consensus 508 ~~~~isd~~l---~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~----~~p~L~~L~Ls~c~~ltd~gl~~l~---~~~ 577 (715)
++ .+++..+ ...+.. +++|++|++++| .+++..+..++. .+++|++|++++| .+++.++..+. ..+
T Consensus 208 ~n-~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 208 SC-GVTSDNCRDLCGIVAS-KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283 (461)
T ss_dssp TS-CCBTTHHHHHHHHHHH-CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred CC-CCcHHHHHHHHHHHHh-CCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence 87 4554433 233333 378999999988 588777666554 4788999999987 78887754443 457
Q ss_pred CCccEEEccCCCCCHHHHHHHHHh---CCCCccEEEeCCCCCCCHHHHHHH---HhcCCCccEEEecCCCCCCHHHHHHH
Q 005073 578 QAIQTLKLCRNAFSDEAIAAFLET---AGEPLKELSLNNVRKVADNTALSL---AKRSNKLVNLDLSWCRNLSDEALGLI 651 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~Ll~~---~~~~L~~L~L~~c~~I~d~~l~~L---~~~~~~L~~LdLs~C~~Ltd~~l~~L 651 (715)
++|+.|+|++|.+++.+...+... ..++|++|+|++| .+++.+...+ ...+++|++|+|++| .+++.++..+
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 361 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL 361 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHH
Confidence 899999999999888777666543 2368999999987 4666544333 356899999999997 5888888777
Q ss_pred Hhc----CCCccEEEEecCCCCCcccccC-----CCCCCeeEEecCCC
Q 005073 652 VDS----CLSLRMLKLFGCSQITNAFLDG-----HSNPDVQIIGLKMS 690 (715)
Q Consensus 652 ~~~----~~~L~~L~L~gC~~lt~~~l~~-----~~~~~L~~l~L~~c 690 (715)
+.. +++|+.|++++| .+++.+... ..++.|+.+.++.+
T Consensus 362 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 653 679999999998 577633221 14566666666655
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.3e-19 Score=199.77 Aligned_cols=326 Identities=20% Similarity=0.273 Sum_probs=225.6
Q ss_pred CCccEEEEcCCCCCCHHH---HHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCC----CccEEEecCCCCC
Q 005073 361 GSPTEIRLRDCSWLTEQE---FTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLP----SLTTLSICGACRI 433 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~---l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~----~L~~L~Ls~c~~l 433 (715)
+.++.|++.+|. ++... +...+..+ ++|++|+|+++. +.+... ..+...++ +|++|+|++| .+
T Consensus 28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~--l~~~~~----~~l~~~l~~~~~~L~~L~L~~n-~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCG-LTEARCKDISSALRVN--PALAELNLRSNE--LGDVGV----HCVLQGLQTPSCKIQKLSLQNC-CL 97 (461)
T ss_dssp TTCSEEEEESSC-CCHHHHHHHHHHHHTC--TTCCEEECTTCC--CHHHHH----HHHHHTTCSTTCCCCEEECTTS-CC
T ss_pred CCccEEEccCCC-CCHHHHHHHHHHHHhC--CCcCEEeCCCCc--CChHHH----HHHHHHHhhCCCceeEEEccCC-CC
Confidence 678889999887 77654 34445556 789999998876 444332 22333333 7999999885 56
Q ss_pred CHHHH---HHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhc---CCceEEEecCCCCchhh--hhHHHhhcCCCCCEEe
Q 005073 434 SDVGF---KALVTSAPALRSINLSQCSLLSSTSVDILADKLG---SFIQELYINDCQSLNAM--LILPALRKLKHLEVLS 505 (715)
Q Consensus 434 sd~~l---~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~---~~L~~L~Ls~c~~l~~~--~l~~~L~~l~~Le~L~ 505 (715)
++.++ ...+..+++|++|++++|. +++.++..++..+. ++|++|++++|...... .+...+..+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 66443 3334567889999998865 77777777766432 36999999988533321 2456677889999999
Q ss_pred ecCccccCHHHHHHHHH---hcCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEEecCCCCCChHHHHHHHh----
Q 005073 506 VAGIETVTDEFVRGFVY---ACGHNMKELILTDCVKLTDFSLKVIA---ETCPRLCTLDLSNLYKLTDFGIGYLAN---- 575 (715)
Q Consensus 506 Ls~~~~isd~~l~~ll~---~~~~~L~~L~Ls~c~~Ltd~~L~~L~---~~~p~L~~L~Ls~c~~ltd~gl~~l~~---- 575 (715)
++++. +++..+..+.. ...++|+.|++++| .+++..+..++ ..+++|++|++++| .+++.++..++.
T Consensus 177 L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 177 VSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLH 253 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTS
T ss_pred CcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhc
Confidence 98864 66655554433 23468999999998 57776544333 35789999999986 788877766553
Q ss_pred cCCCccEEEccCCCCCHHHHHHHHHh--CCCCccEEEeCCCCCCCHHHHHHHHhc----CCCccEEEecCCCCCCHHHHH
Q 005073 576 GCQAIQTLKLCRNAFSDEAIAAFLET--AGEPLKELSLNNVRKVADNTALSLAKR----SNKLVNLDLSWCRNLSDEALG 649 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~~isd~~l~~Ll~~--~~~~L~~L~L~~c~~I~d~~l~~L~~~----~~~L~~LdLs~C~~Ltd~~l~ 649 (715)
.+++|+.|+|++|.+++.++..+... ..++|++|+|+++ .+++.++..++.. .++|++|++++|. +++.+..
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 331 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS 331 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHH
Confidence 47889999999999998875544332 2478999999986 6777776666542 3689999999976 7766543
Q ss_pred H---HHhcCCCccEEEEecCCCCCcccccCC------CCCCeeEEecCCC-----------------CCCCeeecCCCCC
Q 005073 650 L---IVDSCLSLRMLKLFGCSQITNAFLDGH------SNPDVQIIGLKMS-----------------PVLEHVKVPDFHE 703 (715)
Q Consensus 650 ~---L~~~~~~L~~L~L~gC~~lt~~~l~~~------~~~~L~~l~L~~c-----------------p~L~~L~l~~~~~ 703 (715)
. ....+++|+.|++++| .+++.++... .++.|+.+.+..| +.|+.|+++++..
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 3 3346899999999997 6777654422 1567888877653 5566666666543
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.9e-19 Score=189.79 Aligned_cols=295 Identities=19% Similarity=0.267 Sum_probs=184.1
Q ss_pred CCCCCCHHHHHHHHHH-----HhcCCCCChhhHHhhhCCC-ccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCC
Q 005073 328 SLEHVPDALRHKLSFM-----LCDSRQMNSHFLNLLFSGS-PTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGR 401 (715)
Q Consensus 328 ~L~~lp~~~~~kL~~i-----l~~~~~l~~~~l~l~~~~~-L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~ 401 (715)
.+..+|++++.++... +..+..++..|......+. .+.|++.++. +.+..+..+.. ++|+.|++.++..
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~-~~~~~~~~~~~----~~l~~L~l~~n~l 82 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LHPDVTGRLLS----QGVIAFRCPRSFM 82 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB-CCHHHHHHHHH----TTCSEEECTTCEE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc-CCHHHHHhhhh----ccceEEEcCCccc
Confidence 3556777777766543 3335566666666654443 5678877665 55544443321 4677777766541
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEec
Q 005073 402 CMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYIN 481 (715)
Q Consensus 402 ~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls 481 (715)
.... . ....+++|++|+|++| .+++.++...+..+++|++|++++|. +++....
T Consensus 83 --~~~~-----~-~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~---------------- 136 (336)
T 2ast_B 83 --DQPL-----A-EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN---------------- 136 (336)
T ss_dssp --CSCC-----C-SCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH----------------
T ss_pred --cccc-----h-hhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHH----------------
Confidence 1110 0 0234566677777664 35555555555666666666666652 4433333
Q ss_pred CCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC-CccEEEec
Q 005073 482 DCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP-RLCTLDLS 560 (715)
Q Consensus 482 ~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p-~L~~L~Ls 560 (715)
.+..+++|++|++++|..+++..+..++..+ ++|++|++++|..+++..+..+...++ +|++|+|+
T Consensus 137 ------------~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 137 ------------TLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ------------HHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred ------------HHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 3444566666666665555555555544443 667777777765566665555555677 77777777
Q ss_pred CCC-CCChHHHHHHHhcCCCccEEEccCCC-CCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEec
Q 005073 561 NLY-KLTDFGIGYLANGCQAIQTLKLCRNA-FSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLS 638 (715)
Q Consensus 561 ~c~-~ltd~gl~~l~~~~~~Lk~L~Ls~~~-isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs 638 (715)
+|. .+++.++..+...+++|+.|+|++|. +++..+..+.. .++|++|+|++|..+++.++..+ ..+++|+.|+|+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~ 280 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVF 280 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--CTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--CCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEecc
Confidence 765 56666666666667777777777776 66655554432 27888888888877777766444 348999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccccc
Q 005073 639 WCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLD 675 (715)
Q Consensus 639 ~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~ 675 (715)
+| +++.++..+...++.|+ + +|+.++.....
T Consensus 281 ~~--i~~~~~~~l~~~l~~L~---l-~~n~l~~~~~~ 311 (336)
T 2ast_B 281 GI--VPDGTLQLLKEALPHLQ---I-NCSHFTTIARP 311 (336)
T ss_dssp TS--SCTTCHHHHHHHSTTSE---E-SCCCSCCTTCS
T ss_pred Cc--cCHHHHHHHHhhCcceE---E-ecccCccccCC
Confidence 98 88888888876666666 5 45677766544
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=5e-17 Score=173.40 Aligned_cols=285 Identities=17% Similarity=0.254 Sum_probs=209.9
Q ss_pred CCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEE
Q 005073 372 SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSI 451 (715)
Q Consensus 372 ~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L 451 (715)
..+.++.+..|+.+.. . + ++..+.. +.- .| - .....-..++.|++++ ..+.+..+..+.. ++|+.|
T Consensus 10 ~~LP~eil~~If~~L~--~-~--d~~~~~~-vc~-~W---~-~~~~~~~~~~~l~l~~-~~~~~~~~~~~~~--~~l~~L 75 (336)
T 2ast_B 10 DSLPDELLLGIFSCLC--L-P--ELLKVSG-VCK-RW---Y-RLASDESLWQTLDLTG-KNLHPDVTGRLLS--QGVIAF 75 (336)
T ss_dssp SSSCHHHHHHHHTTSC--H-H--HHHHTTS-SCH-HH---H-HHHTCSTTSSEEECTT-CBCCHHHHHHHHH--TTCSEE
T ss_pred hhCCHHHHHHHHHhCC--H-H--HHHHHHH-HHH-HH---H-HHhcCchhheeecccc-ccCCHHHHHhhhh--ccceEE
Confidence 4578888888887652 1 1 3333332 221 12 1 2222334589999998 4566655544332 789999
Q ss_pred eeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEE
Q 005073 452 NLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKEL 531 (715)
Q Consensus 452 ~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L 531 (715)
+++++. +...... +. .+ ++|++|++++|. +....+...+..+++|++|+++++ .+++.....+. . +++|++|
T Consensus 76 ~l~~n~-l~~~~~~-~~-~~-~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~-~~~L~~L 147 (336)
T 2ast_B 76 RCPRSF-MDQPLAE-HF-SP-FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-K-NSNLVRL 147 (336)
T ss_dssp ECTTCE-ECSCCCS-CC-CC-BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-T-CTTCSEE
T ss_pred EcCCcc-ccccchh-hc-cC-CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-c-CCCCCEE
Confidence 999863 2211000 11 12 789999999996 555446677899999999999988 57766655443 3 4899999
Q ss_pred EecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC-CccEEEccCC--CCCHHHHHHHHHhCCCCccE
Q 005073 532 ILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ-AIQTLKLCRN--AFSDEAIAAFLETAGEPLKE 608 (715)
Q Consensus 532 ~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~-~Lk~L~Ls~~--~isd~~l~~Ll~~~~~~L~~ 608 (715)
+|++|..+++..+..+...|++|++|+|++|..+++.++..+...++ +|++|+|++| .+++.++..++... ++|+.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCE
Confidence 99999889998888877789999999999987899988888888899 9999999999 78888887776654 89999
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC--CCCCee
Q 005073 609 LSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH--SNPDVQ 683 (715)
Q Consensus 609 L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~--~~~~L~ 683 (715)
|+|++|..+++..+..+ ..+++|++|+|++|..+++.++..+. .+++|+.|+|++| +++.++... .++.|.
T Consensus 227 L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp EECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred EeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 99999977887776655 45799999999999888888876664 5999999999999 777665443 355555
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.7e-16 Score=173.31 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=148.7
Q ss_pred HHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCC--CCC---HHHHHHH---HhhCCCCCEEee
Q 005073 382 AFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC--RIS---DVGFKAL---VTSAPALRSINL 453 (715)
Q Consensus 382 l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~--~ls---d~~l~~L---~~~~p~L~~L~L 453 (715)
.+..+ ++|++|+|++|. +++... ..+...+..+++|++|+|++|. .++ ..++..+ +..+++|++|+|
T Consensus 27 ~l~~~--~~L~~L~L~~n~--i~~~~~-~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 27 VLLED--DSVKEIVLSGNT--IGTEAA-RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHC--SCCCEEECTTSE--ECHHHH-HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhcC--CCccEEECCCCC--CCHHHH-HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34445 677777777765 443322 2234445567777777777652 222 2233322 235677777777
Q ss_pred ccCCCCChHHHHHHH---HHhcCCceEEEecCCCCchhh---hhHHHhhcC---------CCCCEEeecCccccCHHHHH
Q 005073 454 SQCSLLSSTSVDILA---DKLGSFIQELYINDCQSLNAM---LILPALRKL---------KHLEVLSVAGIETVTDEFVR 518 (715)
Q Consensus 454 s~c~~l~~~~l~~L~---~~~~~~L~~L~Ls~c~~l~~~---~l~~~L~~l---------~~Le~L~Ls~~~~isd~~l~ 518 (715)
++|. ++..++..+. ..+ ++|++|+|++|.. +.. .+...+..+ ++|++|+++++ .+++..+.
T Consensus 102 s~n~-l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 177 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDFLSKH-TPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK 177 (386)
T ss_dssp CSCC-CCTTTHHHHHHHHHHC-TTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred CCCc-CCHHHHHHHHHHHHhC-CCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHH
Confidence 7753 4443222221 222 6677777777753 221 122334444 67777777665 34444443
Q ss_pred HH---HHhcCCCccEEEecCCCCCChHHHHHHHh----cCCCccEEEecCCCCCChHHHHHH---HhcCCCccEEEccCC
Q 005073 519 GF---VYACGHNMKELILTDCVKLTDFSLKVIAE----TCPRLCTLDLSNLYKLTDFGIGYL---ANGCQAIQTLKLCRN 588 (715)
Q Consensus 519 ~l---l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~----~~p~L~~L~Ls~c~~ltd~gl~~l---~~~~~~Lk~L~Ls~~ 588 (715)
.+ +..+ ++|++|+|++| .+++.++..+.. .+++|+.|+|++| .+++.|...+ ...+++|+.|+|++|
T Consensus 178 ~l~~~l~~~-~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 178 EWAKTFQSH-RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHC-TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHhC-CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 22 2223 67777777776 566665444433 4677777777775 5665544333 345677777777777
Q ss_pred CCCHHHHHHHHHh----CCCCccEEEeCCCCCCCHHHHHHHH----hcCCCccEEEecCCCCCCHHH--HHHHHhcCCCc
Q 005073 589 AFSDEAIAAFLET----AGEPLKELSLNNVRKVADNTALSLA----KRSNKLVNLDLSWCRNLSDEA--LGLIVDSCLSL 658 (715)
Q Consensus 589 ~isd~~l~~Ll~~----~~~~L~~L~L~~c~~I~d~~l~~L~----~~~~~L~~LdLs~C~~Ltd~~--l~~L~~~~~~L 658 (715)
.+++.+...+... ..++|+.|+|++| .+++.++..+. .++++|++|+|++|. +++.+ +..+...++++
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhc
Confidence 7777655544432 1467777777775 46654333332 346777777777754 55444 45555555565
Q ss_pred cEEEEe
Q 005073 659 RMLKLF 664 (715)
Q Consensus 659 ~~L~L~ 664 (715)
+.+.+.
T Consensus 333 ~~~~l~ 338 (386)
T 2ca6_A 333 GRGELD 338 (386)
T ss_dssp TCCEEC
T ss_pred Ccchhh
Confidence 555553
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.8e-16 Score=170.48 Aligned_cols=253 Identities=19% Similarity=0.190 Sum_probs=186.5
Q ss_pred HHhcCCCCccEEEecCCCCCCHHHHHHHH---hhCCCCCEEeeccC--CCCC---hHHHHHHHHHh--cCCceEEEecCC
Q 005073 414 SSLNSLPSLTTLSICGACRISDVGFKALV---TSAPALRSINLSQC--SLLS---STSVDILADKL--GSFIQELYINDC 483 (715)
Q Consensus 414 ~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~---~~~p~L~~L~Ls~c--~~l~---~~~l~~L~~~~--~~~L~~L~Ls~c 483 (715)
..+..+++|++|+|++| .+++.+...+. ..+++|+.|+|++| ..++ ..++..++..+ .++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34467889999999994 77887766654 46899999999997 3333 33555554431 278999999999
Q ss_pred CCchhh--hhHHHhhcCCCCCEEeecCccccCHHHHHHHHHh--cC---------CCccEEEecCCCCCChHHHHHHH--
Q 005073 484 QSLNAM--LILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CG---------HNMKELILTDCVKLTDFSLKVIA-- 548 (715)
Q Consensus 484 ~~l~~~--~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~--~~---------~~L~~L~Ls~c~~Ltd~~L~~L~-- 548 (715)
...... .+...+..+++|++|+|+++ .+++.....+... .. ++|++|+|++| .+++..+..++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKT 182 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHH
Confidence 743321 25567899999999999987 4554443333221 11 69999999998 58866666433
Q ss_pred -hcCCCccEEEecCCCCCChHHHHHHHh----cCCCccEEEccCCCCCHHHHHHHHHh--CCCCccEEEeCCCCCCCHHH
Q 005073 549 -ETCPRLCTLDLSNLYKLTDFGIGYLAN----GCQAIQTLKLCRNAFSDEAIAAFLET--AGEPLKELSLNNVRKVADNT 621 (715)
Q Consensus 549 -~~~p~L~~L~Ls~c~~ltd~gl~~l~~----~~~~Lk~L~Ls~~~isd~~l~~Ll~~--~~~~L~~L~L~~c~~I~d~~ 621 (715)
..+++|++|+|++| .+++.|+..++. .+++|+.|+|++|.+++.+...+... ..++|++|+|++| .+++.+
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhh
Confidence 36899999999997 899888666543 78999999999999998776655432 3489999999997 588877
Q ss_pred HHHHHh-----cCCCccEEEecCCCCCCHHHHHHHH----hcCCCccEEEEecCCCCCccc
Q 005073 622 ALSLAK-----RSNKLVNLDLSWCRNLSDEALGLIV----DSCLSLRMLKLFGCSQITNAF 673 (715)
Q Consensus 622 l~~L~~-----~~~~L~~LdLs~C~~Ltd~~l~~L~----~~~~~L~~L~L~gC~~lt~~~ 673 (715)
...++. .+++|++|+|++|. +++.++..+. ..+++|+.|++++|. ++..+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcch
Confidence 666554 28999999999975 9886554443 458999999999975 55444
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=8.4e-16 Score=164.76 Aligned_cols=261 Identities=22% Similarity=0.223 Sum_probs=167.0
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.+|. ++... . +..+ ++|++|+|++|. +.+. .....+++|++|+|+++. ++....
T Consensus 66 ~~L~~L~l~~n~-i~~~~--~-~~~l--~~L~~L~L~~n~--i~~~-------~~~~~l~~L~~L~l~~n~-i~~~~~-- 127 (347)
T 4fmz_A 66 TNLEYLNLNGNQ-ITDIS--P-LSNL--VKLTNLYIGTNK--ITDI-------SALQNLTNLRELYLNEDN-ISDISP-- 127 (347)
T ss_dssp TTCCEEECCSSC-CCCCG--G-GTTC--TTCCEEECCSSC--CCCC-------GGGTTCTTCSEEECTTSC-CCCCGG--
T ss_pred CCccEEEccCCc-cccch--h-hhcC--CcCCEEEccCCc--ccCc-------hHHcCCCcCCEEECcCCc-ccCchh--
Confidence 567788888775 33211 1 3344 788888888775 3331 124677888888888753 333211
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+..+++|+.|++++|..+.... .+.. + ++|+.|++++|...... .+..+++|+.|+++++.......
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~--~~~~-l-~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~---- 194 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLS--PLSN-M-TGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIEDISP---- 194 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCG--GGTT-C-TTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCCCGG----
T ss_pred -hccCCceeEEECCCCCCccccc--chhh-C-CCCcEEEecCCCcCCch----hhccCCCCCEEEccCCccccccc----
Confidence 4567888888888875444321 1222 2 67888888887643322 16778888888888764322211
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
+ ...++|+.|++++| .+++... ...+++|+.|++++| .+++... ...+++|+.|+|++|.+.+. ..+
T Consensus 195 ~-~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~~-- 261 (347)
T 4fmz_A 195 L-ASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDI--NAV-- 261 (347)
T ss_dssp G-GGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC--GGG--
T ss_pred c-cCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCC--hhH--
Confidence 1 23378888888887 3544332 335788999999886 4554322 45678899999998877652 111
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcc
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNA 672 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~ 672 (715)
...++|+.|+|++| .+++. .....+++|+.|++++|. +++.....+. .+++|+.|++++|. ++..
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 262 KDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHHH-TCTTCSEEECCSSS-CCCC
T ss_pred hcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCCc-CCCcChhHhh-ccccCCEEEccCCc-cccc
Confidence 12378999999887 45432 123568899999999975 7766665554 68999999999985 5554
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=1.9e-15 Score=162.02 Aligned_cols=277 Identities=20% Similarity=0.207 Sum_probs=194.7
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.+++|++.++.-..... +..+ ++|++|+|++|. +.+.. . ...+++|++|+|++| .++.. ..
T Consensus 44 ~~L~~L~l~~~~i~~~~~----~~~~--~~L~~L~l~~n~--i~~~~------~-~~~l~~L~~L~L~~n-~i~~~--~~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG----IEYL--TNLEYLNLNGNQ--ITDIS------P-LSNLVKLTNLYIGTN-KITDI--SA 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT----GGGC--TTCCEEECCSSC--CCCCG------G-GTTCTTCCEEECCSS-CCCCC--GG
T ss_pred ccccEEEEeCCccccchh----hhhc--CCccEEEccCCc--cccch------h-hhcCCcCCEEEccCC-cccCc--hH
Confidence 578899999886322211 3445 899999999986 44321 1 578999999999996 44442 22
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+..+++|++|++++|..-.... +. .+ ++|+.|++++|...... ..+..+++|++|+++++.......
T Consensus 106 -~~~l~~L~~L~l~~n~i~~~~~---~~-~l-~~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~---- 172 (347)
T 4fmz_A 106 -LQNLTNLRELYLNEDNISDISP---LA-NL-TKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP---- 172 (347)
T ss_dssp -GTTCTTCSEEECTTSCCCCCGG---GT-TC-TTCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG----
T ss_pred -HcCCCcCCEEECcCCcccCchh---hc-cC-CceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh----
Confidence 4678999999999975322222 22 22 88999999999765543 237899999999999875333222
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
+ ...++|+.|++++|. +++... ...+++|+.|++++| .+++... ...+++|+.|+|++|.+.+... +
T Consensus 173 ~-~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~-- 239 (347)
T 4fmz_A 173 I-ANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP--L-- 239 (347)
T ss_dssp G-GGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG--G--
T ss_pred h-ccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc--h--
Confidence 2 234899999999984 554332 346899999999996 5554332 4568999999999998866332 1
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCC
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSN 679 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~ 679 (715)
...++|+.|+|++| .+++. .....+++|++|++++|. +++. .. ...+++|+.|++++|. ++...... ..+
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~l 310 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDI--SV-LNNLSQLNSLFLNNNQ-LGNEDMEVIGGL 310 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSC-CCGGGHHHHHTC
T ss_pred hcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCC--hh-hcCCCCCCEEECcCCc-CCCcChhHhhcc
Confidence 23489999999997 45432 123568999999999985 6543 22 4579999999999984 66554432 256
Q ss_pred CCeeEEecCCC
Q 005073 680 PDVQIIGLKMS 690 (715)
Q Consensus 680 ~~L~~l~L~~c 690 (715)
+.|+.+.+..|
T Consensus 311 ~~L~~L~L~~n 321 (347)
T 4fmz_A 311 TNLTTLFLSQN 321 (347)
T ss_dssp TTCSEEECCSS
T ss_pred ccCCEEEccCC
Confidence 77777776654
No 13
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=2.6e-13 Score=146.85 Aligned_cols=248 Identities=19% Similarity=0.193 Sum_probs=118.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCC-CccEEEecCCCCCCHHH---HHHHHhhC-CCCCEEeeccCCCCChHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLP-SLTTLSICGACRISDVG---FKALVTSA-PALRSINLSQCSLLSSTS 463 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~-~L~~L~Ls~c~~lsd~~---l~~L~~~~-p~L~~L~Ls~c~~l~~~~ 463 (715)
++|++|+|++|. +++.... .+...+..++ +|++|+|++| .+++.+ +..++... ++|++|+|++|. +++..
T Consensus 22 ~~L~~L~Ls~n~--l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNN--LYSISTV-ELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp TTCCEEECTTSC--GGGSCHH-HHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCceEEEccCCC--CChHHHH-HHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence 447777776665 3332221 2223344555 6777777664 444332 22222332 667777777653 33322
Q ss_pred HHHHHHH---hcCCceEEEecCCCCchhhh---hHHHhhcC-CCCCEEeecCccccCHHHHH---HHHHhcCCCccEEEe
Q 005073 464 VDILADK---LGSFIQELYINDCQSLNAML---ILPALRKL-KHLEVLSVAGIETVTDEFVR---GFVYACGHNMKELIL 533 (715)
Q Consensus 464 l~~L~~~---~~~~L~~L~Ls~c~~l~~~~---l~~~L~~l-~~Le~L~Ls~~~~isd~~l~---~ll~~~~~~L~~L~L 533 (715)
...++.. ++++|+.|+|++|. ++... +...+..+ ++|++|+++++ .+++.+.. ..+....++|++|+|
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeee
Confidence 2222222 22466677776665 22221 22334442 46666666654 33332222 222222236666666
Q ss_pred cCCCCCChHHHHHHH---hcC-CCccEEEecCCCCCChHHHHHHH----hcCCCccEEEccCCCCCHHHHHHHHH--hCC
Q 005073 534 TDCVKLTDFSLKVIA---ETC-PRLCTLDLSNLYKLTDFGIGYLA----NGCQAIQTLKLCRNAFSDEAIAAFLE--TAG 603 (715)
Q Consensus 534 s~c~~Ltd~~L~~L~---~~~-p~L~~L~Ls~c~~ltd~gl~~l~----~~~~~Lk~L~Ls~~~isd~~l~~Ll~--~~~ 603 (715)
++| .+++.....++ ..+ ++|+.|+|++| .+++.+...+. ..+++|+.|+|++|.+++.+...+.. ...
T Consensus 175 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 175 RGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred cCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 666 35443332222 223 36666666664 45554433322 22346666666666665543333222 122
Q ss_pred CCccEEEeCCCC--CCCHHHHHHHHh---cCCCccEEEecCCCCCCHH
Q 005073 604 EPLKELSLNNVR--KVADNTALSLAK---RSNKLVNLDLSWCRNLSDE 646 (715)
Q Consensus 604 ~~L~~L~L~~c~--~I~d~~l~~L~~---~~~~L~~LdLs~C~~Ltd~ 646 (715)
++|+.|+|++|. .+++..+..+.. .+++|+.|+++++. +.+.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 556666666553 355555555443 23455566666643 4443
No 14
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=2.7e-13 Score=146.72 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=175.5
Q ss_pred HHHHhcCCCCccEEEecCCCCCCHHHH---HHHHhhCC-CCCEEeeccCCCCChHHHHHHHHH---hcCCceEEEecCCC
Q 005073 412 LASSLNSLPSLTTLSICGACRISDVGF---KALVTSAP-ALRSINLSQCSLLSSTSVDILADK---LGSFIQELYINDCQ 484 (715)
Q Consensus 412 l~~~~~~l~~L~~L~Ls~c~~lsd~~l---~~L~~~~p-~L~~L~Ls~c~~l~~~~l~~L~~~---~~~~L~~L~Ls~c~ 484 (715)
++.+....++|++|+|++| .+++.+. ...+..++ +|++|+|++| .+++.+...++.. .+++|++|+|++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4566677778999999995 4555433 34446677 8999999997 4555444444432 23789999999997
Q ss_pred Cch--hhhhHHHhhcC-CCCCEEeecCccccCHHHHHHH---HHhcCCCccEEEecCCCCCChHHHHHHHh---cCC-Cc
Q 005073 485 SLN--AMLILPALRKL-KHLEVLSVAGIETVTDEFVRGF---VYACGHNMKELILTDCVKLTDFSLKVIAE---TCP-RL 554 (715)
Q Consensus 485 ~l~--~~~l~~~L~~l-~~Le~L~Ls~~~~isd~~l~~l---l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~---~~p-~L 554 (715)
... ...+...+..+ ++|++|+++++. +++.....+ +...+++|++|+|++| .+++.....++. .++ +|
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccc
Confidence 322 22244556777 899999999874 444443333 3222369999999998 587655544432 344 99
Q ss_pred cEEEecCCCCCChHHHHHH---HhcC-CCccEEEccCCCCCHHHHHHH---HHhCCCCccEEEeCCCCCCCHHHH---HH
Q 005073 555 CTLDLSNLYKLTDFGIGYL---ANGC-QAIQTLKLCRNAFSDEAIAAF---LETAGEPLKELSLNNVRKVADNTA---LS 624 (715)
Q Consensus 555 ~~L~Ls~c~~ltd~gl~~l---~~~~-~~Lk~L~Ls~~~isd~~l~~L---l~~~~~~L~~L~L~~c~~I~d~~l---~~ 624 (715)
++|+|++| .+++.+...+ ...+ ++|+.|+|++|.+++.+...+ +....++|++|+|+++ .+++.+. ..
T Consensus 170 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 247 (362)
T 3goz_A 170 NSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL 247 (362)
T ss_dssp CEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred cEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence 99999997 6766554433 3445 499999999999888554433 3333469999999997 5666444 44
Q ss_pred HHhcCCCccEEEecCCC--CCCHHHHHHHHhc---CCCccEEEEecCCCCCcc
Q 005073 625 LAKRSNKLVNLDLSWCR--NLSDEALGLIVDS---CLSLRMLKLFGCSQITNA 672 (715)
Q Consensus 625 L~~~~~~L~~LdLs~C~--~Ltd~~l~~L~~~---~~~L~~L~L~gC~~lt~~ 672 (715)
+...+++|+.|+|++|. .+++.++..+... +++|+.|+++++. +.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 44668999999999974 5888888888765 4567777888754 5544
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=9.9e-14 Score=155.33 Aligned_cols=244 Identities=21% Similarity=0.286 Sum_probs=145.1
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|++|++++|. ++.. .. +..+++|+.|++.++.. .... +.. + ++|+.|++++|... .. ..+.
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~~~~-~~~~---~~~-l-~~L~~L~l~~n~l~-~~---~~l~ 196 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDI--SA-LSGLTSLQQLSFGNQVT-DLKP---LAN-L-TTLERLDISSNKVS-DI---SVLA 196 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCC--GG-GTTCTTCSEEEEEESCC-CCGG---GTT-C-TTCCEEECCSSCCC-CC---GGGG
T ss_pred cCCCCCCEEECCCCc-cCCC--hh-hccCCcccEeecCCccc-Cchh---hcc-C-CCCCEEECcCCcCC-CC---hhhc
Confidence 455566666665532 2211 11 24455666666654211 1111 211 2 67888888887532 21 2367
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
.+++|++|+++++....... + ...++|+.|++++| .+++. ..+ ..+++|+.|++++| .++.... ...
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~---~~~ 263 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP----L-GILTNLDELSLNGN-QLKDI--GTL-ASLTNLTDLDLANN-QISNLAP---LSG 263 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG----G-GGCTTCCEEECCSS-CCCCC--GGG-GGCTTCSEEECCSS-CCCCCGG---GTT
T ss_pred cCCCCCEEEecCCccccccc----c-cccCCCCEEECCCC-Ccccc--hhh-hcCCCCCEEECCCC-ccccchh---hhc
Confidence 78888888887764322111 1 22478888888887 35543 223 35788888888886 4443221 456
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCL 656 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~ 656 (715)
+++|+.|++++|.+..... + ...++|+.|+|++|. +++.. . ...+++|+.|++++|. +++... ...++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~ 331 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--L--AGLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFNN-ISDISP---VSSLT 331 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSSC-CSCCGG---GGGCT
T ss_pred CCCCCEEECCCCccCcccc--c--cCCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCCc-CCCchh---hccCc
Confidence 7889999998887765321 1 134789999998874 43211 1 3568899999999975 554322 35789
Q ss_pred CccEEEEecCCCCCcccccCCCCCCeeEEecCC-----------CCCCCeeecCCC
Q 005073 657 SLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKM-----------SPVLEHVKVPDF 701 (715)
Q Consensus 657 ~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~-----------cp~L~~L~l~~~ 701 (715)
+|+.|++++| .+++.. ....++.|+.+.+.. ++.|+.|.+.++
T Consensus 332 ~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp TCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred cCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 9999999987 465542 223677777776654 445666665543
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=7.4e-14 Score=156.34 Aligned_cols=275 Identities=20% Similarity=0.236 Sum_probs=182.3
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHH
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~ 439 (715)
.+.++.|++.+|. ++... . +..+ ++|++|++++|. +.+. . ....+++|+.|.+.+. +... .
T Consensus 111 l~~L~~L~L~~n~-l~~~~--~-~~~l--~~L~~L~l~~n~--l~~~------~-~~~~l~~L~~L~l~~~--~~~~--~ 171 (466)
T 1o6v_A 111 LTNLTGLTLFNNQ-ITDID--P-LKNL--TNLNRLELSSNT--ISDI------S-ALSGLTSLQQLSFGNQ--VTDL--K 171 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG--G-GTTC--TTCSEEEEEEEE--ECCC------G-GGTTCTTCSEEEEEES--CCCC--G
T ss_pred CCCCCEEECCCCC-CCCCh--H-HcCC--CCCCEEECCCCc--cCCC------h-hhccCCcccEeecCCc--ccCc--h
Confidence 3678899999886 33311 1 3444 899999999876 3321 1 2477899999999742 2221 1
Q ss_pred HHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHH
Q 005073 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (715)
Q Consensus 440 ~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ 519 (715)
. +..+++|+.|++++|..-... .+.. + ++|+.|++++|...... .+..+++|+.|+++++.......
T Consensus 172 ~-~~~l~~L~~L~l~~n~l~~~~---~l~~-l-~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--- 238 (466)
T 1o6v_A 172 P-LANLTTLERLDISSNKVSDIS---VLAK-L-TNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGT--- 238 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCG---GGGG-C-TTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG---
T ss_pred h-hccCCCCCEEECcCCcCCCCh---hhcc-C-CCCCEEEecCCcccccc----cccccCCCCEEECCCCCcccchh---
Confidence 1 467899999999997532221 1222 2 78999999998643322 26778999999998874322211
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHH
Q 005073 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFL 599 (715)
Q Consensus 520 ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll 599 (715)
+. .+++|+.|++++|. ++.... ...+++|+.|++++| .++.... ...+++|+.|+|++|.+.+... +
T Consensus 239 -l~-~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~- 305 (466)
T 1o6v_A 239 -LA-SLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQLEDISP--I- 305 (466)
T ss_dssp -GG-GCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCSCCGG--G-
T ss_pred -hh-cCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCcccCchh--h-
Confidence 12 33889999999984 544322 335889999999986 5554222 4468899999999987765221 1
Q ss_pred HhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCC
Q 005073 600 ETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSN 679 (715)
Q Consensus 600 ~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~ 679 (715)
...++|+.|+|++|. +++... ...+++|+.|++++|. +++. ..+ ..+++|+.|++++|. +++... ...+
T Consensus 306 -~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~-~~~l 374 (466)
T 1o6v_A 306 -SNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDV--SSL-ANLTNINWLSAGHNQ-ISDLTP-LANL 374 (466)
T ss_dssp -GGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCC--GGG-TTCTTCCEEECCSSC-CCBCGG-GTTC
T ss_pred -cCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCc--hhh-ccCCCCCEEeCCCCc-cCccch-hhcC
Confidence 234789999999874 443221 3568999999999975 6543 233 468999999999874 555443 4577
Q ss_pred CCeeEEecCCC
Q 005073 680 PDVQIIGLKMS 690 (715)
Q Consensus 680 ~~L~~l~L~~c 690 (715)
+.|+.+.+..+
T Consensus 375 ~~L~~L~l~~n 385 (466)
T 1o6v_A 375 TRITQLGLNDQ 385 (466)
T ss_dssp TTCCEEECCCE
T ss_pred CCCCEEeccCC
Confidence 88888888765
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=5.2e-14 Score=160.21 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++.. ... ....+..+++|++|+|+++ .++.......+..+++|+.|++++|..++......+.
T Consensus 74 ~~L~~L~Ls~n~l--~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 145 (549)
T 2z81_A 74 GSLEHLDLSDNHL--SSL-----SSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145 (549)
T ss_dssp TTCCEEECTTSCC--CSC-----CHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred ccCCEEECCCCcc--Ccc-----CHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhh
Confidence 5666666666542 211 1222355666666666663 2222111112344566666666665433221111111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecC
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAG 508 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~ 508 (715)
. + ++|++|++++|..... ....+..+++|++|++.+
T Consensus 146 ~-l-~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 146 G-L-TSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp T-C-CEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEEC
T ss_pred c-c-cccCeeeccCCccccc--ChhhhhccccCceEeccc
Confidence 1 1 5566666665542211 122234444455555444
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=5.3e-15 Score=164.35 Aligned_cols=129 Identities=20% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCC
Q 005073 552 PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNK 631 (715)
Q Consensus 552 p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~ 631 (715)
++|+.|++++| .++... ......+++|+.|+|++|.+.......+. ..++|+.|+|+++ .++... ......+++
T Consensus 275 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQN-FLGSID-SRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCCEEC-GGGGTTCTT
T ss_pred cCceEEEecCc-cccccc-hhhcccCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCC-ccCCcC-hhHhcCccc
Confidence 35555555553 333211 11223456677777777666542111111 1256777777765 333211 111234677
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCC
Q 005073 632 LVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 632 L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
|++|+|++|. ++......+ ..+++|+.|+|++| +++...... ..+++|+.+.+..
T Consensus 349 L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 349 LEVLDLSYNH-IRALGDQSF-LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCc-ccccChhhc-cccccccEEECCCC-ccccCCHhHhccCCcccEEEccC
Confidence 7777777753 543322222 34677777777775 455544332 2455555555544
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=6e-15 Score=163.91 Aligned_cols=304 Identities=16% Similarity=0.156 Sum_probs=175.9
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHH
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~ 439 (715)
...++.|++.++. ++... ...+..+ ++|++|+|+++.. .... ....+..+++|++|+|+++ .++....
T Consensus 29 ~~~l~~L~Ls~n~-i~~~~-~~~~~~l--~~L~~L~L~~n~~-~~~i-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~- 96 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAELN-ETSFSRL--QDLQFLKVEQQTP-GLVI-----RNNTFRGLSSLIILKLDYN-QFLQLET- 96 (455)
T ss_dssp CTTCCEEECCSSC-CCEEC-TTTTSSC--TTCCEEECCCCST-TCEE-----CTTTTTTCTTCCEEECTTC-TTCEECT-
T ss_pred CCccCEEEecCCc-cCcCC-hhHhccC--ccccEEECcCCcc-cceE-----CcccccccccCCEEeCCCC-ccCccCh-
Confidence 3678999999886 43210 1123344 8999999998863 1110 0123477899999999985 3433211
Q ss_pred HHHhhCCCCCEEeeccCCCCChHHHHH--HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccC--HH
Q 005073 440 ALVTSAPALRSINLSQCSLLSSTSVDI--LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVT--DE 515 (715)
Q Consensus 440 ~L~~~~p~L~~L~Ls~c~~l~~~~l~~--L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~is--d~ 515 (715)
..+..+++|++|++++|. ++...+.. +.. + ++|++|+|++|..... .....+..+++|++|+++++.... ..
T Consensus 97 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~-l-~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCN-LDGAVLSGNFFKP-L-TSLEMLVLRDNNIKKI-QPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CBTHHHHSSTTTT-C-TTCCEEECCSSBCCSC-CCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred hhccCcccCCEEeCCCCC-CCccccCcccccC-c-ccCCEEECCCCccCcc-CcccccCCCCcccEEeCCCCcccccChh
Confidence 123568999999999975 44322222 222 2 7899999999964322 111237889999999998864211 11
Q ss_pred HHHHHH-----------------------------HhcCCCccEEEecCCCCCChHHHHHHHhc--CCCccEEEecCCCC
Q 005073 516 FVRGFV-----------------------------YACGHNMKELILTDCVKLTDFSLKVIAET--CPRLCTLDLSNLYK 564 (715)
Q Consensus 516 ~l~~ll-----------------------------~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~--~p~L~~L~Ls~c~~ 564 (715)
.+..+. ....++|+.|++++| .++......+... .++|+.|++++|..
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccc
Confidence 111110 001134566666655 3544444333322 25566666655421
Q ss_pred CCh------------HHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCc
Q 005073 565 LTD------------FGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKL 632 (715)
Q Consensus 565 ltd------------~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L 632 (715)
... ..+.. -.+++|+.|+|++|.+.......+ ...++|+.|+|+++. ++..... ....+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L 325 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNE-INKIDDN-AFWGLTHL 325 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSC-CCEECTT-TTTTCTTC
T ss_pred cccccchhhhccCccccccc--ccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCc-ccccChh-HhcCcccC
Confidence 110 00000 123678888888887764211111 123789999999863 4422111 12457899
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCC
Q 005073 633 VNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 633 ~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
++|+|++|. ++...... +..+++|+.|+|++| .++...... ..++.|+.+.+..
T Consensus 326 ~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 326 LKLNLSQNF-LGSIDSRM-FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CEEECCSSC-CCEECGGG-GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCc-cCCcChhH-hcCcccCCEEECCCC-cccccChhhccccccccEEECCC
Confidence 999999974 65432222 346899999999997 466654433 3677888876643
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=8.3e-14 Score=167.15 Aligned_cols=300 Identities=13% Similarity=0.112 Sum_probs=168.3
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHH---HhcCCCCccEEEecCCCCCCHH
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLAS---SLNSLPSLTTLSICGACRISDV 436 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~---~~~~l~~L~~L~Ls~c~~lsd~ 436 (715)
..+++.|+|.+|..... +...+..+ ++|+.|+|+++.. ++...+...+.. ....+++|+.|+|+++ .++
T Consensus 490 L~~L~~L~Ls~N~l~~~--iP~~l~~L--~~L~~L~Ls~N~~-lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-- 561 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ--LPDFLYDL--PELQSLNIACNRG-ISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE-- 561 (876)
T ss_dssp CTTCCEEEEESCTTCCS--CCGGGGGC--SSCCEEECTTCTT-SCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--
T ss_pred CCCCCEEECcCCCCCcc--ChHHHhCC--CCCCEEECcCCCC-cccccchHHHHhhhhcccccCCccEEEeeCC-cCC--
Confidence 35788999988863321 11233344 8999999988752 333122222222 2356779999999985 444
Q ss_pred HHHH--HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCC-CCEEeecCccccC
Q 005073 437 GFKA--LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKH-LEVLSVAGIETVT 513 (715)
Q Consensus 437 ~l~~--L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~-Le~L~Ls~~~~is 513 (715)
.+.. .+..+++|+.|+|++|. ++. +..+.. + ++|+.|+|++|... .+...+..+++ |+.|+++++. +.
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~-l~~--lp~~~~-L-~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-L~ 632 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNK-VRH--LEAFGT-N-VKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNK-LK 632 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSC-CCB--CCCCCT-T-SEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred ccCChhhhhcCCCCCEEECCCCC-ccc--chhhcC-C-CcceEEECcCCccc---cchHHHhhccccCCEEECcCCC-CC
Confidence 2333 45778999999999874 221 112222 2 78999999988643 23445777888 9999998764 33
Q ss_pred HHHHHHHHHh-cCCCccEEEecCCCCCChHHH---HHHH-hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCC
Q 005073 514 DEFVRGFVYA-CGHNMKELILTDCVKLTDFSL---KVIA-ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (715)
Q Consensus 514 d~~l~~ll~~-~~~~L~~L~Ls~c~~Ltd~~L---~~L~-~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~ 588 (715)
.+...+.. ..++|+.|+|++|. ++.... ..+. ..+++|+.|+|++| .++... ..+...+++|+.|+|++|
T Consensus 633 --~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 633 --YIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP-TELFATGSPISTIILSNN 707 (876)
T ss_dssp --SCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSC
T ss_pred --cCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCC
Confidence 11111111 11348888888873 432110 0000 02347888888875 555322 233445778888888887
Q ss_pred CCCHHHHHHHHHhC-------CCCccEEEeCCCCCCCHHHHHHHH--hcCCCccEEEecCCCCCCHHHHHHHHhcCCCcc
Q 005073 589 AFSDEAIAAFLETA-------GEPLKELSLNNVRKVADNTALSLA--KRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLR 659 (715)
Q Consensus 589 ~isd~~l~~Ll~~~-------~~~L~~L~L~~c~~I~d~~l~~L~--~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~ 659 (715)
.+.. +...+... +++|+.|+|++| .++ .+.... ..+++|+.|+|++|. ++. +..-...+++|+
T Consensus 708 ~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~lp~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~ 779 (876)
T 4ecn_A 708 LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SLSDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLK 779 (876)
T ss_dssp CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CCCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCC
T ss_pred cCCc--cChHHhccccccccccCCccEEECCCC-CCc--cchHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCC
Confidence 6652 11100000 027888888876 344 122222 257788888888864 543 222223677888
Q ss_pred EEEEecCC-----CCCcccccC-CCCCCeeEEecCC
Q 005073 660 MLKLFGCS-----QITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 660 ~L~L~gC~-----~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
.|+|++|. ++....... ..+++|+.+.|+.
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 88887633 222222211 2466666666543
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=8.3e-15 Score=168.97 Aligned_cols=312 Identities=19% Similarity=0.156 Sum_probs=179.1
Q ss_pred ChhhHHhhhCCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCC
Q 005073 351 NSHFLNLLFSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGA 430 (715)
Q Consensus 351 ~~~~l~l~~~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c 430 (715)
....+..+....++.|++.++. ++... ...+..+ ++|++|+|+++.. .. ++..+..+++|++|+|+++
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~-l~~~~-~~~~~~l--~~L~~L~l~~n~l--~~------lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHY-FFNIS-SNTFHCF--SGLQELDLTATHL--SE------LPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCC-CSSCC-TTTTTTC--TTCSEEECTTSCC--SC------CCSSCCSCTTCCEEECTTC
T ss_pred ChhHhchhhcCceeEEEeecCc-cCccC-HHHhccc--cCCCEEeccCCcc--CC------CChhhcccccCCEEECccC
Confidence 3333333333467788888775 22210 1122333 7899999988763 21 1223467888999999885
Q ss_pred CCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCcc
Q 005073 431 CRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (715)
Q Consensus 431 ~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~ 510 (715)
.++.... ..+..+++|+.|++++|..........+.. + ++|+.|++++|...........+..+++|++|+++++.
T Consensus 312 -~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 312 -KFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLEN-L-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp -CCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTT-C-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred -CcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhc-c-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 4443211 223567899999998874321111111111 2 78899999888643322113346788899999988763
Q ss_pred ccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 511 TVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 511 ~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
. ..... ..+. ..++|+.|++++|. ++..........+++|+.|++++| .++..... ....+++|+.|+|++|.+
T Consensus 388 l-~~~~~-~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 388 P-LSLKT-EAFK-ECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQ-LFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp C-EEECT-TTTT-TCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTC-CCBTTCTT-TTTTCTTCCEEECTTCBC
T ss_pred C-CcCCH-HHhc-CCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCC-ccCCcCHH-HHhCCCCCCEEECCCCCC
Confidence 2 11100 0111 23789999998873 432222122235788999999886 44432222 234578899999988877
Q ss_pred CHHHHH--HHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCC
Q 005073 591 SDEAIA--AFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQ 668 (715)
Q Consensus 591 sd~~l~--~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~ 668 (715)
.+..+. ..+ ...++|+.|+|++|. ++.... .....+++|++|+|++|. ++......+ ..++.| .|++++| .
T Consensus 462 ~~~~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 462 PKGNIQKTNSL-QTLGRLEILVLSFCD-LSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSIEAL-SHLKGI-YLNLASN-H 534 (606)
T ss_dssp GGGEECSSCGG-GGCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCGGGGGGG-TTCCSC-EEECCSS-C
T ss_pred Cccccccchhh-ccCCCccEEECCCCc-cCccCh-hhhccccCCCEEECCCCc-cCcCChhHh-Cccccc-EEECcCC-c
Confidence 652111 011 123788999998873 432111 112457889999998864 766554444 357888 8888886 4
Q ss_pred CCcccccC-CCCCCeeEEecCCCC
Q 005073 669 ITNAFLDG-HSNPDVQIIGLKMSP 691 (715)
Q Consensus 669 lt~~~l~~-~~~~~L~~l~L~~cp 691 (715)
++...... ..++.|+.+.+..+|
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccccCHhhcccCCCCCEEeCCCCC
Confidence 55443332 134556666665544
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=5.1e-14 Score=157.71 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=112.2
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.++. ++.. . -+..+ ++|++|+|+++. +... + ...+++|++|+++++ .++...
T Consensus 42 ~~L~~L~Ls~n~-l~~~--~-~l~~l--~~L~~L~Ls~n~--l~~~------~--~~~l~~L~~L~Ls~N-~l~~~~--- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDM--T-GIEKL--TGLTKLICTSNN--ITTL------D--LSQNTNLTYLACDSN-KLTNLD--- 101 (457)
T ss_dssp TTCCEEECCSSC-CCCC--T-TGGGC--TTCSEEECCSSC--CSCC------C--CTTCTTCSEEECCSS-CCSCCC---
T ss_pred CCCCEEEccCCC-cccC--h-hhccc--CCCCEEEccCCc--CCeE------c--cccCCCCCEEECcCC-CCceee---
Confidence 567777777764 3321 1 12334 778888887765 3331 1 456777888888774 333321
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+..+++|+.|++++|. ++... +.. + ++|+.|++++|.... . .+..+++|+.|+++++..+....+
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~---~~~-l-~~L~~L~l~~N~l~~-l----~l~~l~~L~~L~l~~n~~~~~~~~--- 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD---VSQ-N-PLLTYLNCARNTLTE-I----DVSHNTQLTELDCHLNKKITKLDV--- 166 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC---CTT-C-TTCCEEECTTSCCSC-C----CCTTCTTCCEEECTTCSCCCCCCC---
T ss_pred -cCCCCcCCEEECCCCc-CCeec---CCC-C-CcCCEEECCCCccce-e----ccccCCcCCEEECCCCCccccccc---
Confidence 3556777888777763 22211 211 2 677777777775322 1 256677777777776543332211
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
...++|+.|++++| .++... ...+++|+.|++++| .++... ...+++|+.|++++|.++... +
T Consensus 167 --~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~~ip---~-- 229 (457)
T 3bz5_A 167 --TPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLTEID---V-- 229 (457)
T ss_dssp --TTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC---C--
T ss_pred --ccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCcccccC---c--
Confidence 12266777777776 354422 224666777777664 444321 234566777777776665421 1
Q ss_pred hCCCCccEEEeCCC
Q 005073 601 TAGEPLKELSLNNV 614 (715)
Q Consensus 601 ~~~~~L~~L~L~~c 614 (715)
...++|+.|+|+++
T Consensus 230 ~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 230 TPLTQLTYFDCSVN 243 (457)
T ss_dssp TTCTTCSEEECCSS
T ss_pred cccCCCCEEEeeCC
Confidence 12356677776665
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=3.1e-13 Score=152.91 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=56.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHH-HHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDE-AIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~-~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
.+++|++|++++| .++...... ...+++|+.|+|++|.+... .+...+. ..++|+.|+|+++. ++..........
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~-l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNS-VSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSC-CBCCGGGCSCCC
T ss_pred hCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCc-CCcccccchhcc
Confidence 3556666666654 343321111 13455666666666666542 1111111 22566666666543 221000001123
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcC-CCccEEEEecCCCCCcccccCCCCCCeeEEecC
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSC-LSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLK 688 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~-~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~ 688 (715)
+++|++|++++|. ++... ...+ ++|+.|++++| +++..+.....++.|+.+.+.
T Consensus 398 l~~L~~L~Ls~N~-l~~~~----~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 398 TKSLLSLNMSSNI-LTDTI----FRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CTTCCEEECCSSC-CCGGG----GGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred CccCCEEECcCCC-CCcch----hhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECC
Confidence 4556666666543 43211 1122 45666666654 344332222245555555444
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.6e-14 Score=161.79 Aligned_cols=298 Identities=17% Similarity=0.134 Sum_probs=148.9
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
..++.|+|.++. ++... ...+..+ ++|++|+|+++. +... .+..+..+++|++|+|+++ .++.... .
T Consensus 32 ~~l~~L~L~~n~-l~~~~-~~~~~~l--~~L~~L~L~~n~--i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~ 98 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLN-QDEFASF--PHLEELELNENI--VSAV-----EPGAFNNLFNLRTLGLRSN-RLKLIPL-G 98 (477)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTC--TTCCEEECTTSC--CCEE-----CTTTTTTCTTCCEEECCSS-CCCSCCT-T
T ss_pred CCCcEEECCCCc-cceEC-HhHccCC--CCCCEEECCCCc--cCEe-----ChhhhhCCccCCEEECCCC-cCCccCc-c
Confidence 355667777664 32210 0122333 777888877764 2221 1123456777888887764 3332111 1
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
.+..+++|+.|+|++|.. .......+. .+ ++|+.|+|++|..... ....+..+++|+.|+++++. +..... ..
T Consensus 99 ~~~~l~~L~~L~Ls~n~i-~~~~~~~~~-~l-~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~ 171 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKI-VILLDYMFQ-DL-YNLKSLEVGDNDLVYI--SHRAFSGLNSLEQLTLEKCN-LTSIPT-EA 171 (477)
T ss_dssp SSTTCTTCCEEECTTSCC-CEECTTTTT-TC-TTCCEEEECCTTCCEE--CTTSSTTCTTCCEEEEESCC-CSSCCH-HH
T ss_pred cccCCCCCCEEECCCCcc-ccCChhHcc-cc-ccCCEEECCCCcccee--ChhhccCCCCCCEEECCCCc-CcccCh-hH
Confidence 134567778888777632 211001111 12 6777777777653221 12235667777777777653 221111 11
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
+. ..++|+.|+|++| .++......+ ..+++|+.|+|++|..+...... +. ...+|+.|+|++|.+.......+
T Consensus 172 l~-~l~~L~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~-- 244 (477)
T 2id5_A 172 LS-HLHGLIVLRLRHL-NINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPN-CL-YGLNLTSLSITHCNLTAVPYLAV-- 244 (477)
T ss_dssp HT-TCTTCCEEEEESC-CCCEECTTCS-CSCTTCCEEEEECCTTCCEECTT-TT-TTCCCSEEEEESSCCCSCCHHHH--
T ss_pred hc-ccCCCcEEeCCCC-cCcEeChhhc-ccCcccceeeCCCCccccccCcc-cc-cCccccEEECcCCcccccCHHHh--
Confidence 11 2367777777776 3433221112 23667777777776544321111 11 12467777777776654222222
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCC
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSN 679 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~ 679 (715)
...++|+.|+|+++. ++.... .....+++|+.|+|++|. ++......+ ..+++|+.|+|++| .++...... ..+
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPYAF-RGLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTTTB-TTCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred cCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCc-cceECHHHh-cCcccCCEEECCCC-cCceeCHhHcCCC
Confidence 123677777777653 332111 112346677777777753 443222222 35677777777775 455443322 245
Q ss_pred CCeeEEecCCC
Q 005073 680 PDVQIIGLKMS 690 (715)
Q Consensus 680 ~~L~~l~L~~c 690 (715)
++|+.+.+..+
T Consensus 320 ~~L~~L~l~~N 330 (477)
T 2id5_A 320 GNLETLILDSN 330 (477)
T ss_dssp GGCCEEECCSS
T ss_pred cccCEEEccCC
Confidence 55666655443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.36 E-value=4.3e-14 Score=158.36 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=175.5
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++. +... ....+..+++|++|+|+++ .++..... .+..+++|+.|+|+++. ++......+.
T Consensus 32 ~~l~~L~L~~n~--l~~~-----~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNR--IKTL-----NQDEFASFPHLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSNR-LKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSC--CCEE-----CTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCSCCTTSST
T ss_pred CCCcEEECCCCc--cceE-----CHhHccCCCCCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCCc-CCccCccccc
Confidence 689999999876 3321 1223578999999999985 44432111 24678999999999973 2221111111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|+.|+|++|..... ....+..+++|++|+++++. +....... + ...++|+.|+|++| .++......+.
T Consensus 102 ~-l-~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~l~ 173 (477)
T 2id5_A 102 G-L-SNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDND-LVYISHRA-F-SGLNSLEQLTLEKC-NLTSIPTEALS 173 (477)
T ss_dssp T-C-TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTT-CCEECTTS-S-TTCTTCCEEEEESC-CCSSCCHHHHT
T ss_pred C-C-CCCCEEECCCCccccC--ChhHccccccCCEEECCCCc-cceeChhh-c-cCCCCCCEEECCCC-cCcccChhHhc
Confidence 1 2 7899999999964322 12347889999999998753 22111111 1 12379999999998 46654444444
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
.+++|+.|+|.++ .++..... ....+++|+.|+|++|.+......... ...+|+.|+|++| .++.... .....
T Consensus 174 -~l~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n-~l~~~~~-~~~~~ 246 (477)
T 2id5_A 174 -HLHGLIVLRLRHL-NINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHC-NLTAVPY-LAVRH 246 (477)
T ss_dssp -TCTTCCEEEEESC-CCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESS-CCCSCCH-HHHTT
T ss_pred -ccCCCcEEeCCCC-cCcEeChh-hcccCcccceeeCCCCccccccCcccc--cCccccEEECcCC-cccccCH-HHhcC
Confidence 5899999999986 45442221 234578999999998754321111111 1258999999997 4543222 23356
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCC
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
+++|+.|+|++|. ++...... +..+++|+.|+|++| +++...... ..++.|+.+.+..
T Consensus 247 l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 247 LVYLRFLNLSYNP-ISTIEGSM-LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CTTCCEEECCSSC-CCEECTTS-CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCS
T ss_pred ccccCeeECCCCc-CCccChhh-ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCC
Confidence 8999999999975 65332222 246899999999997 466654433 3677888876653
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=2.6e-13 Score=162.85 Aligned_cols=309 Identities=17% Similarity=0.160 Sum_probs=186.6
Q ss_pred CCccEEEEcCCCCCCHH----------------HHHHHH--hhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCc
Q 005073 361 GSPTEIRLRDCSWLTEQ----------------EFTKAF--VSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSL 422 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~----------------~l~~l~--~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L 422 (715)
..++.|+|.++. ++.. .+..-+ ..+ ++|++|+|+.|.. ... ++..+..+++|
T Consensus 448 ~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~N~l-~~~------iP~~l~~L~~L 517 (876)
T 4ecn_A 448 TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDLTDVELYNCPN-MTQ------LPDFLYDLPEL 517 (876)
T ss_dssp TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEESCTT-CCS------CCGGGGGCSSC
T ss_pred CCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccC--CCCCEEECcCCCC-Ccc------ChHHHhCCCCC
Confidence 578889998886 4431 111111 134 7899999988763 111 22345778899
Q ss_pred cEEEecCCCCCCH----HHHHHHH---hhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHh
Q 005073 423 TTLSICGACRISD----VGFKALV---TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPAL 495 (715)
Q Consensus 423 ~~L~Ls~c~~lsd----~~l~~L~---~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L 495 (715)
+.|+|+++..++. ..+..+. ..+++|+.|+|++|..-.-.....+.. + ++|+.|+|++|... . +. .+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~-L-~~L~~L~Ls~N~l~-~--lp-~~ 591 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK-M-VKLGLLDCVHNKVR-H--LE-AF 591 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT-C-TTCCEEECTTSCCC-B--CC-CC
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc-C-CCCCEEECCCCCcc-c--ch-hh
Confidence 9999988643665 1222221 245689999998874221101112322 2 78999999988633 2 22 67
Q ss_pred hcCCCCCEEeecCccccCHHHHHHHHHhcCCC-ccEEEecCCCCCChHHHHHHHhcC--CCccEEEecCCCCCChHHHHH
Q 005073 496 RKLKHLEVLSVAGIETVTDEFVRGFVYACGHN-MKELILTDCVKLTDFSLKVIAETC--PRLCTLDLSNLYKLTDFGIGY 572 (715)
Q Consensus 496 ~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~-L~~L~Ls~c~~Ltd~~L~~L~~~~--p~L~~L~Ls~c~~ltd~gl~~ 572 (715)
..+++|+.|+++++. +. .+...+... ++ |+.|+|++|. ++.. ......+ ++|+.|+|++| .++... ..
T Consensus 592 ~~L~~L~~L~Ls~N~-l~--~lp~~l~~l-~~~L~~L~Ls~N~-L~~l--p~~~~~~~~~~L~~L~Ls~N-~l~g~i-p~ 662 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQ-IE--EIPEDFCAF-TDQVEGLGFSHNK-LKYI--PNIFNAKSVYVMGSVDFSYN-KIGSEG-RN 662 (876)
T ss_dssp CTTSEESEEECCSSC-CS--CCCTTSCEE-CTTCCEEECCSSC-CCSC--CSCCCTTCSSCEEEEECCSS-CTTTTS-SS
T ss_pred cCCCcceEEECcCCc-cc--cchHHHhhc-cccCCEEECcCCC-CCcC--chhhhccccCCCCEEECcCC-cCCCcc-cc
Confidence 788899999998763 32 111112222 56 9999999884 5521 1111112 45999999986 443210 10
Q ss_pred HH-----hcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHH-HH-------hcCCCccEEEecC
Q 005073 573 LA-----NGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALS-LA-------KRSNKLVNLDLSW 639 (715)
Q Consensus 573 l~-----~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~-L~-------~~~~~L~~LdLs~ 639 (715)
+. -.+++|+.|+|++|.+.. +...+....++|+.|+|+++ .++. +.. +. .+|++|+.|+|++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred chhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCC
Confidence 10 124589999999998773 22222223479999999986 4441 111 11 1234899999999
Q ss_pred CCCCCHHHHHHHH--hcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCC-------------------CCCCCeeec
Q 005073 640 CRNLSDEALGLIV--DSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKM-------------------SPVLEHVKV 698 (715)
Q Consensus 640 C~~Ltd~~l~~L~--~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~-------------------cp~L~~L~l 698 (715)
|. ++ .+.... ..+++|+.|+|++| .++..+.....+++|+.+.|+. ++.|+.|++
T Consensus 738 N~-L~--~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 738 NK-LT--SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp SC-CC--CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CC-Cc--cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 74 66 233333 26899999999997 4665443334778888887743 667888888
Q ss_pred CCCCC
Q 005073 699 PDFHE 703 (715)
Q Consensus 699 ~~~~~ 703 (715)
+++..
T Consensus 814 s~N~L 818 (876)
T 4ecn_A 814 GSNDI 818 (876)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 77654
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=5.9e-14 Score=153.16 Aligned_cols=144 Identities=19% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++| .++... ...+++|+.|++++| .+++. .....+++|+.|+|++|.+.......+. ..++
T Consensus 205 ~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~ 273 (390)
T 3o6n_A 205 IAVEELDASHN-SINVVR----GPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQR 273 (390)
T ss_dssp SSCSEEECCSS-CCCEEE----CCCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT--TCSS
T ss_pred CcceEEECCCC-eeeecc----ccccccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhHcc--cccc
Confidence 45666666665 233221 112467888888875 45543 2234578888888888877653222221 2378
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEE
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQII 685 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l 685 (715)
|+.|+|+++ .++.. ......+++|++|+|++|. ++... ..+ ..+++|+.|++++|. ++...+ ..++.|+.+
T Consensus 274 L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~-~~l~~L~~L~L~~N~-i~~~~~--~~~~~L~~L 344 (390)
T 3o6n_A 274 LERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDHNS-IVTLKL--STHHTLKNL 344 (390)
T ss_dssp CCEEECCSS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCSSC-CCCCCC--CTTCCCSEE
T ss_pred CCEEECCCC-cCccc--CcccCCCCCCCEEECCCCc-ceecC-ccc-cccCcCCEEECCCCc-cceeCc--hhhccCCEE
Confidence 888888886 34321 1112357888888888874 54211 112 347888888888864 554432 234455555
Q ss_pred ecCC
Q 005073 686 GLKM 689 (715)
Q Consensus 686 ~L~~ 689 (715)
.+..
T Consensus 345 ~l~~ 348 (390)
T 3o6n_A 345 TLSH 348 (390)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 5543
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.35 E-value=6.9e-14 Score=163.05 Aligned_cols=109 Identities=18% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHh------hCCCCCEEeeccCCCCChH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVT------SAPALRSINLSQCSLLSST 462 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~------~~p~L~~L~Ls~c~~l~~~ 462 (715)
++|++|+|++|.. .. .++..+..+++|+.|+|+++..++...+..-+. .+++|+.|++++|..-.-.
T Consensus 249 ~~L~~L~L~~n~l--~~-----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 249 KDLTDVEVYNCPN--LT-----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp TTCCEEEEECCTT--CS-----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred CCCCEEEecCCcC--Cc-----cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 7888888887752 11 112334677888888888754366522222222 2477888888776322100
Q ss_pred HHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc
Q 005073 463 SVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (715)
Q Consensus 463 ~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~ 509 (715)
....+.. + ++|+.|++++|...... . .+..+++|+.|+++++
T Consensus 322 ~~~~l~~-l-~~L~~L~L~~N~l~g~i--p-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 322 VETSLQK-M-KKLGMLECLYNQLEGKL--P-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp CHHHHTT-C-TTCCEEECCSCCCEEEC--C-CCEEEEEESEEECCSS
T ss_pred chhhhcc-C-CCCCEEeCcCCcCccch--h-hhCCCCCCCEEECCCC
Confidence 0012222 2 56777777777532121 1 3444455555555443
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=1.6e-12 Score=147.98 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=41.7
Q ss_pred cCCCccEEEccCCCCCHHHHHHHH-HhCCCCccEEEeCCCCCCCHHH-HHHHHhcCCCccEEEecCCCCCCHHHHHHHHh
Q 005073 576 GCQAIQTLKLCRNAFSDEAIAAFL-ETAGEPLKELSLNNVRKVADNT-ALSLAKRSNKLVNLDLSWCRNLSDEALGLIVD 653 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~~isd~~l~~Ll-~~~~~~L~~L~L~~c~~I~d~~-l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~ 653 (715)
.+++|+.|+|++|.+.+....... -...++|+.|+|++| .++... .......+++|++|++++|. ++ .+.....
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~ 407 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FH--PMPDSCQ 407 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CC--CCCSCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-Cc--cCChhhc
Confidence 456666666666666553322110 012256666666665 333221 11223456666666666653 43 1111122
Q ss_pred cCCCccEEEEecC
Q 005073 654 SCLSLRMLKLFGC 666 (715)
Q Consensus 654 ~~~~L~~L~L~gC 666 (715)
.+++|+.|++++|
T Consensus 408 ~~~~L~~L~Ls~N 420 (549)
T 2z81_A 408 WPEKMRFLNLSST 420 (549)
T ss_dssp CCTTCCEEECTTS
T ss_pred ccccccEEECCCC
Confidence 3455666666554
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.34 E-value=2.3e-14 Score=165.25 Aligned_cols=275 Identities=15% Similarity=0.161 Sum_probs=164.7
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHH
Q 005073 390 NLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILAD 469 (715)
Q Consensus 390 ~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~ 469 (715)
+|+.|+++++.. ... .......+++|++|+|+++ .++. +..-+..+++|+.|++++|. +.......+..
T Consensus 255 ~L~~L~l~~n~l--~~~-----~~~~~~~l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHYF--FNI-----SSNTFHCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANK-FENLCQISASN 323 (606)
T ss_dssp EEEEEECTTCCC--SSC-----CTTTTTTCTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCC-CSBGGGGCGGG
T ss_pred ceeEEEeecCcc--Ccc-----CHHHhccccCCCEEeccCC-ccCC--CChhhcccccCCEEECccCC-cCcCchhhhhc
Confidence 577777777652 221 1223467889999999885 4442 21123557889999998874 33211112222
Q ss_pred HhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHh
Q 005073 470 KLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAE 549 (715)
Q Consensus 470 ~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~ 549 (715)
+ ++|+.|++++|...... ....+..+++|++|+++++...........+ ...++|+.|++++|. ++......+.
T Consensus 324 -l-~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~- 397 (606)
T 3t6q_A 324 -F-PSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNE-PLSLKTEAFK- 397 (606)
T ss_dssp -C-TTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCS-CEEECTTTTT-
T ss_pred -c-CcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCc-CCcCCHHHhc-
Confidence 2 78999999988643221 1223678889999999876422111000011 123789999999883 5433222233
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHH--HHHh
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTAL--SLAK 627 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~--~L~~ 627 (715)
.+++|+.|++++| .++..........+++|+.|+|++|.+.......+. ..++|++|+|+++. ++...+. ....
T Consensus 398 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 398 ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNH-FPKGNIQKTNSLQ 473 (606)
T ss_dssp TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEECTTCB-CGGGEECSSCGGG
T ss_pred CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEECCCCC-CCccccccchhhc
Confidence 4788999999886 443322222234578999999999877543222221 23789999999874 4321111 1234
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCC-CCCCeeEEecCC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGH-SNPDVQIIGLKM 689 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~-~~~~L~~l~L~~ 689 (715)
.+++|+.|+|++|. ++......+ ..+++|+.|++++| +++....... .++.| .+.+..
T Consensus 474 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 474 TLGRLEILVLSFCD-LSSIDQHAF-TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp GCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS
T ss_pred cCCCccEEECCCCc-cCccChhhh-ccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcC
Confidence 68999999999975 654332333 46899999999997 4666554433 56666 665543
No 31
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=134.15 Aligned_cols=175 Identities=22% Similarity=0.264 Sum_probs=131.4
Q ss_pred CCceEEEecCCCCchhh--hhHHHhhcC-CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHh
Q 005073 473 SFIQELYINDCQSLNAM--LILPALRKL-KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAE 549 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~--~l~~~L~~l-~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~ 549 (715)
+.|+.|+|++|...... .+...+... ++|++|+|+++ .+++.++..+.... ++|+.|+|++| .+++.++..++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L-~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVF-LRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHH-HTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHH-HhccHhhcCCC-CCCHHHHHHHHH
Confidence 77999999998633221 233344433 68999999887 57777776665544 68999999998 688888777654
Q ss_pred ----cCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEEccCCCCCHHHHHHHHHh--CCCCccEEEeCCCCCCCHH
Q 005073 550 ----TCPRLCTLDLSNLYKLTDFGIGYLA---NGCQAIQTLKLCRNAFSDEAIAAFLET--AGEPLKELSLNNVRKVADN 620 (715)
Q Consensus 550 ----~~p~L~~L~Ls~c~~ltd~gl~~l~---~~~~~Lk~L~Ls~~~isd~~l~~Ll~~--~~~~L~~L~L~~c~~I~d~ 620 (715)
.+++|+.|+|++| .+++.+...++ ..+++|++|+|++|.+++.++..+... ..++|+.|+|++| .|++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 3578999999986 78887776664 457889999999999988887666443 2368999999986 68888
Q ss_pred HHHHHHh---cCCCccEEEecCCCCCCHHHHHHHHh
Q 005073 621 TALSLAK---RSNKLVNLDLSWCRNLSDEALGLIVD 653 (715)
Q Consensus 621 ~l~~L~~---~~~~L~~LdLs~C~~Ltd~~l~~L~~ 653 (715)
++..++. .+++|++|+|++|. |++.++..+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 7766654 56889999999965 99998888875
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.33 E-value=4e-14 Score=165.04 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=138.1
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHH--hcCCCCccEEEecCCCCCCHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASS--LNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~--~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
..++.|++.+|..... +...+..+ ++|++|+|+++.. ++...+...+..+ ...+++|+.|+|+++ .++ .+
T Consensus 249 ~~L~~L~L~~n~l~~~--~p~~l~~l--~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~i 320 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTK--LPTFLKAL--PEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TF 320 (636)
T ss_dssp TTCCEEEEECCTTCSS--CCTTTTTC--SSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SC
T ss_pred CCCCEEEecCCcCCcc--ChHHHhcC--CCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCC-cCC--cc
Confidence 5678888888763221 11122223 7888888887752 3321121222221 233578888888874 444 23
Q ss_pred HH--HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCC-CCEEeecCccccCHH
Q 005073 439 KA--LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKH-LEVLSVAGIETVTDE 515 (715)
Q Consensus 439 ~~--L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~-Le~L~Ls~~~~isd~ 515 (715)
.. .+..+++|+.|++++|..-..-. .+.. + ++|+.|++++|... .+...+..+++ |++|+++++. +.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~-l-~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~-- 390 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP--AFGS-E-IKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LK-- 390 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC--CCEE-E-EEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CS--
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh--hhCC-C-CCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-Cc--
Confidence 22 35667888888888864220111 1211 1 67888888877532 23334667777 8888887653 22
Q ss_pred HHHHHHHh-cCCCccEEEecCCCCCChHHHHHHH------hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCC
Q 005073 516 FVRGFVYA-CGHNMKELILTDCVKLTDFSLKVIA------ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (715)
Q Consensus 516 ~l~~ll~~-~~~~L~~L~Ls~c~~Ltd~~L~~L~------~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~ 588 (715)
.+...+.. ..++|+.|++++|. ++......+. ..+++|+.|+|++| .++... ..+...+++|+.|+|++|
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGN 467 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSS
T ss_pred ccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCC
Confidence 11111111 11367777777763 4332111111 02456777777764 444211 123334666777777766
Q ss_pred CCCHHHHHHHHHhC------CCCccEEEeCCCCCCCHHHHHHHH--hcCCCccEEEecCCCCCCHHHHHHHHhcCCCccE
Q 005073 589 AFSDEAIAAFLETA------GEPLKELSLNNVRKVADNTALSLA--KRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRM 660 (715)
Q Consensus 589 ~isd~~l~~Ll~~~------~~~L~~L~L~~c~~I~d~~l~~L~--~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~ 660 (715)
.+..-....+ ... .++|+.|+|+++ .++ .+.... ..+++|+.|+|++|. ++. +..-...+++|+.
T Consensus 468 ~l~~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~ 540 (636)
T 4eco_A 468 MLTEIPKNSL-KDENENFKNTYLLTSIDLRFN-KLT--KLSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKG 540 (636)
T ss_dssp CCSBCCSSSS-EETTEECTTGGGCCEEECCSS-CCC--BCCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCE
T ss_pred CCCCcCHHHh-ccccccccccCCccEEECcCC-cCC--ccChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCE
Confidence 6542100000 000 016666666665 333 111111 245666666666643 442 2211224666666
Q ss_pred EEEec
Q 005073 661 LKLFG 665 (715)
Q Consensus 661 L~L~g 665 (715)
|+|++
T Consensus 541 L~Ls~ 545 (636)
T 4eco_A 541 FGIRN 545 (636)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 66654
No 33
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.8e-11 Score=130.84 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|++|. +++.........+...+++|++|+|++ +.+++.++..++..+++|++|+|++| .+++.++..++
T Consensus 72 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred hhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 466677776665 444433322222233345777777776 35677666666666667777777775 46666666655
Q ss_pred HHh---cCCceEEEecCCCCchhhh---hHHHhhcCCCCCEEeecCccccCHHHHHHHHHh--cCCCccEEEecCCCCCC
Q 005073 469 DKL---GSFIQELYINDCQSLNAML---ILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CGHNMKELILTDCVKLT 540 (715)
Q Consensus 469 ~~~---~~~L~~L~Ls~c~~l~~~~---l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~--~~~~L~~L~Ls~c~~Lt 540 (715)
..+ .++|++|+|++|. +++.+ +...+..+++|++|+|+++ .+++.++..+... ..++|+.|+|++| .|+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 432 1445555555553 22211 2223344445555555443 2443333322211 1134444444444 344
Q ss_pred hHHHHHHHh---cCCCccEEEecCCCCCChHHHHHH
Q 005073 541 DFSLKVIAE---TCPRLCTLDLSNLYKLTDFGIGYL 573 (715)
Q Consensus 541 d~~L~~L~~---~~p~L~~L~Ls~c~~ltd~gl~~l 573 (715)
+.+...++. .+++|++|+|++| .+++.|...+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L 259 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN-ELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHH
Confidence 443333322 2244444444442 3444444433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=1.6e-13 Score=158.75 Aligned_cols=237 Identities=18% Similarity=0.152 Sum_probs=124.5
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|+.|+|+++ .++... ..++..+++|+.|+|++|. ++......+.. + ++|+.|+|++|.... . .+.
T Consensus 120 ~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l-~~L~~L~L~~N~l~~-~----~~~ 189 (597)
T 3oja_B 120 QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIEDDTFQA-T-TSLQNLQLSSNRLTH-V----DLS 189 (597)
T ss_dssp TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTTT-C-TTCCEEECTTSCCSB-C----CGG
T ss_pred cCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCCc-CCCCChhhhhc-C-CcCcEEECcCCCCCC-c----Chh
Confidence 45556666666553 222110 1112345566666665542 11110001111 1 456666666554221 1 134
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
.+++|+.|+++++. +..- ...++|+.|++++|. ++... ....++|+.|+|++| .+++. .....
T Consensus 190 ~l~~L~~L~l~~n~-l~~l-------~~~~~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n-~l~~~---~~l~~ 252 (597)
T 3oja_B 190 LIPSLFHANVSYNL-LSTL-------AIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHN-NLTDT---AWLLN 252 (597)
T ss_dssp GCTTCSEEECCSSC-CSEE-------ECCTTCSEEECCSSC-CCEEE----CSCCSCCCEEECCSS-CCCCC---GGGGG
T ss_pred hhhhhhhhhcccCc-cccc-------cCCchhheeeccCCc-ccccc----cccCCCCCEEECCCC-CCCCC---hhhcc
Confidence 45556666655432 2110 112466777776662 43221 112357888888886 45542 22345
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCL 656 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~ 656 (715)
+++|+.|+|++|.+.......+. ..++|+.|+|+++ .++. +......+++|+.|+|++|. ++. +......++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~--i~~~~~~l~ 324 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFD 324 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHT
T ss_pred CCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCC-CCc--cCcccccCC
Confidence 78899999998887653222221 2378999999886 3432 11222457899999999875 542 221123578
Q ss_pred CccEEEEecCCCCCcccccCCCCCCeeEEecCCCC
Q 005073 657 SLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSP 691 (715)
Q Consensus 657 ~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp 691 (715)
+|+.|+|++|. ++... ...++.|+.+.+.++|
T Consensus 325 ~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 99999999875 54443 2345566666665443
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=148.04 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=103.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChH-HHHHHHhcCCCccEEEccCCCCCH-HHHHHHHHh
Q 005073 524 CGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDF-GIGYLANGCQAIQTLKLCRNAFSD-EAIAAFLET 601 (715)
Q Consensus 524 ~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~-gl~~l~~~~~~Lk~L~Ls~~~isd-~~l~~Ll~~ 601 (715)
..++|++|++++| .+++.....+ ..+++|+.|++++| .++.. .+......+++|+.|+|++|.+.. .....+ .
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--S 396 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--C
T ss_pred hCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchh--c
Confidence 3478999999998 4665333333 35899999999996 66652 344445678999999999998765 211111 1
Q ss_pred CCCCccEEEeCCCCCCCHHHHHHHHhcC-CCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccccc-CCCC
Q 005073 602 AGEPLKELSLNNVRKVADNTALSLAKRS-NKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLD-GHSN 679 (715)
Q Consensus 602 ~~~~L~~L~L~~c~~I~d~~l~~L~~~~-~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~-~~~~ 679 (715)
..++|+.|+|++| .++.. +...+ ++|+.|+|++|. ++ .+..-...+++|+.|++++| +++..+.. ...+
T Consensus 397 ~l~~L~~L~Ls~N-~l~~~----~~~~l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 467 (520)
T 2z7x_B 397 WTKSLLSLNMSSN-ILTDT----IFRCLPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL 467 (520)
T ss_dssp CCTTCCEEECCSS-CCCGG----GGGSCCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred cCccCCEEECcCC-CCCcc----hhhhhcccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence 2379999999997 45432 22233 699999999975 76 23322237999999999997 57755443 2245
Q ss_pred CCeeEEecCCCC
Q 005073 680 PDVQIIGLKMSP 691 (715)
Q Consensus 680 ~~L~~l~L~~cp 691 (715)
+.|+.+.+..+|
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 666666665544
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.31 E-value=3.1e-14 Score=169.52 Aligned_cols=12 Identities=42% Similarity=0.202 Sum_probs=6.5
Q ss_pred CCCccEEEecCC
Q 005073 551 CPRLCTLDLSNL 562 (715)
Q Consensus 551 ~p~L~~L~Ls~c 562 (715)
+++|+.|++++|
T Consensus 342 l~~L~~L~Ls~n 353 (768)
T 3rgz_A 342 MRGLKVLDLSFN 353 (768)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEeCcCC
Confidence 455555555554
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.31 E-value=9.9e-14 Score=159.96 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=38.3
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|+.|+++++. ++... .+..+++|+.|++++|.. .. +..+ .+ ++|+.|++++|..+... .+.
T Consensus 282 ~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~--lp~~--~l-~~L~~L~l~~n~~~~~~----~~~ 347 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQ--FPTL--DL-PFLKSLTLTMNKGSISF----KKV 347 (606)
T ss_dssp GGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SS--CCCC--CC-SSCCEEEEESCSSCEEC----CCC
T ss_pred ccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-cc--cccC--CC-CccceeeccCCcCccch----hhc
Confidence 445666666666643 22211 123456666666666532 11 1111 11 55666666666433322 234
Q ss_pred cCCCCCEEeecCc
Q 005073 497 KLKHLEVLSVAGI 509 (715)
Q Consensus 497 ~l~~Le~L~Ls~~ 509 (715)
.+++|++|+++++
T Consensus 348 ~l~~L~~L~ls~n 360 (606)
T 3vq2_A 348 ALPSLSYLDLSRN 360 (606)
T ss_dssp CCTTCCEEECCSS
T ss_pred cCCCCCEEECcCC
Confidence 5566666666554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.30 E-value=5.3e-13 Score=145.57 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=180.4
Q ss_pred CCccEEEEcCCC--CCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH
Q 005073 361 GSPTEIRLRDCS--WLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 361 ~~L~~L~L~~c~--~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
..++.|++.++. .+... ++..+ ++|++|+|+++. +.+. ....+..+++|++|+|+++ .++....
T Consensus 45 ~~l~~l~l~~~~l~~l~~~----~~~~l--~~L~~L~L~~n~--i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~ 110 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA----LLDSF--RQVELLNLNDLQ--IEEI-----DTYAFAYAHTIQKLYMGFN-AIRYLPP 110 (390)
T ss_dssp CCCSEEEEESCEESEECTH----HHHHC--CCCSEEECTTSC--CCEE-----CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCceEEEecCCchhhCChh----Hhccc--ccCcEEECCCCc--cccc-----ChhhccCCCCcCEEECCCC-CCCcCCH
Confidence 577889998875 23332 34445 899999999876 3321 1123477899999999985 3443211
Q ss_pred HHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHH
Q 005073 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~ 518 (715)
..+..+++|+.|++++|. ++......+. .+ ++|++|++++|..... ....+..+++|++|+++++. +....+
T Consensus 111 -~~~~~l~~L~~L~L~~n~-l~~l~~~~~~-~l-~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~- 182 (390)
T 3o6n_A 111 -HVFQNVPLLTVLVLERND-LSSLPRGIFH-NT-PKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNR-LTHVDL- 182 (390)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TC-TTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSC-CSBCCG-
T ss_pred -HHhcCCCCCCEEECCCCc-cCcCCHHHhc-CC-CCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCc-CCcccc-
Confidence 123567999999999973 2211111111 12 7899999999863321 12347788999999998763 332211
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHH
Q 005073 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAF 598 (715)
Q Consensus 519 ~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~L 598 (715)
...++|+.|++++| .++.. ...++|+.|++++| .++.... ...++|+.|++++|.+.+.. .+
T Consensus 183 ----~~l~~L~~L~l~~n-~l~~~------~~~~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~n~l~~~~--~l 244 (390)
T 3o6n_A 183 ----SLIPSLFHANVSYN-LLSTL------AIPIAVEELDASHN-SINVVRG----PVNVELTILKLQHNNLTDTA--WL 244 (390)
T ss_dssp ----GGCTTCSEEECCSS-CCSEE------ECCSSCSEEECCSS-CCCEEEC----CCCSSCCEEECCSSCCCCCG--GG
T ss_pred ----ccccccceeecccc-ccccc------CCCCcceEEECCCC-eeeeccc----cccccccEEECCCCCCcccH--HH
Confidence 23389999999987 35432 13578999999986 5554311 23578999999999887642 22
Q ss_pred HHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCC
Q 005073 599 LETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHS 678 (715)
Q Consensus 599 l~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~ 678 (715)
. ..++|++|+|+++ .++.... .....+++|++|+|++|. ++. +......+++|+.|++++| .++........
T Consensus 245 -~-~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 316 (390)
T 3o6n_A 245 -L-NYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ 316 (390)
T ss_dssp -G-GCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSSC-CCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred -c-CCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCCc-Ccc--cCcccCCCCCCCEEECCCC-cceecCccccc
Confidence 2 2389999999997 4543211 122458999999999975 653 2222246899999999998 46654433234
Q ss_pred CCCeeEEecCC
Q 005073 679 NPDVQIIGLKM 689 (715)
Q Consensus 679 ~~~L~~l~L~~ 689 (715)
++.|+.+.+..
T Consensus 317 l~~L~~L~L~~ 327 (390)
T 3o6n_A 317 FDRLENLYLDH 327 (390)
T ss_dssp HTTCSEEECCS
T ss_pred cCcCCEEECCC
Confidence 56676666553
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=8.4e-14 Score=165.79 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=18.2
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~ 509 (715)
++|+.|+|++|...... ....+..+++|++|+++++
T Consensus 318 ~~L~~L~L~~n~l~~~i-p~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 318 SLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp TTCCEEECCSSEEEEEC-CHHHHTTCTTCCEEECCSS
T ss_pred CCccEEECCCCcccCcC-CHHHHhcCCCCCEEeCcCC
Confidence 55666666665422111 1223555666666666554
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.29 E-value=3.6e-14 Score=163.61 Aligned_cols=294 Identities=16% Similarity=0.067 Sum_probs=137.7
Q ss_pred CccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHH
Q 005073 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKAL 441 (715)
Q Consensus 362 ~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L 441 (715)
.++++.+..+..+...... +..+ ++|+.|++.++.. ... + ....+++|+.|++++|.. +. +..+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~--~~~l--~~L~~L~l~~~~~--~~l------~-~l~~~~~L~~L~l~~n~l-~~--lp~~ 325 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK--FHCL--ANVSAMSLAGVSI--KYL------E-DVPKHFKWQSLSIIRCQL-KQ--FPTL 325 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS--CGGG--TTCSEEEEESCCC--CCC------C-CCCTTCCCSEEEEESCCC-SS--CCCC
T ss_pred cHhheeccccccccccccc--cccC--CCCCEEEecCccc--hhh------h-hccccccCCEEEcccccC-cc--cccC
Confidence 3455666444444432221 2333 6677777766552 111 1 234566677777766432 22 1122
Q ss_pred HhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHH
Q 005073 442 VTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFV 521 (715)
Q Consensus 442 ~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll 521 (715)
.+++|+.|++++|..+....+. .+ ++|+.|++++|.......+...+..+++|++|+++++...... ..+
T Consensus 326 --~l~~L~~L~l~~n~~~~~~~~~----~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~ 395 (606)
T 3vq2_A 326 --DLPFLKSLTLTMNKGSISFKKV----AL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANF 395 (606)
T ss_dssp --CCSSCCEEEEESCSSCEECCCC----CC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCC
T ss_pred --CCCccceeeccCCcCccchhhc----cC-CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch---hhc
Confidence 5566777777666333322111 11 5677777766642221111334556667777776655311100 001
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHh
Q 005073 522 YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLET 601 (715)
Q Consensus 522 ~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~ 601 (715)
. ..++|+.|++++|. ++..........+++|+.|++++| .++.... .....+++|+.|+|++|.+.+..+...+.
T Consensus 396 ~-~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 470 (606)
T 3vq2_A 396 M-GLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT-NTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFA- 470 (606)
T ss_dssp T-TCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred c-CCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCC-CCCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhc-
Confidence 1 12567777776662 322211011124566777777665 2322111 11234566777777666554321111111
Q ss_pred CCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCC-
Q 005073 602 AGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNP- 680 (715)
Q Consensus 602 ~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~- 680 (715)
..++|+.|+|++| .++.... .....+++|++|+|++|. ++......+ ..+++|+.|+|++|. ++..+.....++
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~p~~~~~l~~ 545 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDSSHY-NQLYSLSTLDCSFNR-IETSKGILQHFPK 545 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEGGGT-TTCTTCCEEECTTSC-CCCEESCGGGSCT
T ss_pred cCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCHHHc-cCCCcCCEEECCCCc-CcccCHhHhhhcc
Confidence 1256777777665 3332111 112346667777777653 443222222 346667777777653 554333322333
Q ss_pred CeeEEecCCCC
Q 005073 681 DVQIIGLKMSP 691 (715)
Q Consensus 681 ~L~~l~L~~cp 691 (715)
.|+.+.+..+|
T Consensus 546 ~L~~l~l~~N~ 556 (606)
T 3vq2_A 546 SLAFFNLTNNS 556 (606)
T ss_dssp TCCEEECCSCC
T ss_pred cCcEEEccCCC
Confidence 35555555443
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=4.7e-14 Score=149.92 Aligned_cols=255 Identities=16% Similarity=0.113 Sum_probs=171.1
Q ss_pred HHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCC
Q 005073 379 FTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSL 458 (715)
Q Consensus 379 l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~ 458 (715)
+..++..+ ++|++|+|+++. +... ....+..+++|+.|+|+++. ++... . +..+++|+.|++++|.
T Consensus 26 ~~~~~~~~--~~L~~L~L~~n~--l~~~-----~~~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 26 LASLRQSA--WNVKELDLSGNP--LSQI-----SAADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp HHHHHTTG--GGCSEEECTTSC--CCCC-----CHHHHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSE-
T ss_pred HHHHhccC--CCCCEEECcCCc--cCcC-----CHHHhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCc-
Confidence 44555555 799999999886 3332 12345788999999999854 33211 1 4668999999999973
Q ss_pred CChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCC
Q 005073 459 LSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVK 538 (715)
Q Consensus 459 l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~ 538 (715)
++... ..++|+.|++++|...... ...+++|+.|+++++. +....... + ...++|+.|++++| .
T Consensus 92 l~~l~-------~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~-~-~~l~~L~~L~Ls~N-~ 155 (317)
T 3o53_A 92 VQELL-------VGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNK-ITMLRDLD-E-GCRSRVQYLDLKLN-E 155 (317)
T ss_dssp EEEEE-------ECTTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBC-T-GGGSSEEEEECTTS-C
T ss_pred ccccc-------CCCCcCEEECCCCccCCcC-----ccccCCCCEEECCCCC-CCCccchh-h-hccCCCCEEECCCC-C
Confidence 22111 1278999999998643221 2357889999998864 33211101 1 12379999999998 5
Q ss_pred CChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCC
Q 005073 539 LTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVA 618 (715)
Q Consensus 539 Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~ 618 (715)
++......+...+++|+.|+|++| .++.. ... ..+++|+.|+|++|.+...... +. ..++|+.|+|+++ .++
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN-KLV 227 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS-CCC
T ss_pred CCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCC-ccc
Confidence 776555555556899999999996 55543 111 1378999999999988652111 21 2379999999997 454
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccc
Q 005073 619 DNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFL 674 (715)
Q Consensus 619 d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l 674 (715)
. +......+++|+.|+|++|. ++...+..+...+++|+.|++.+|..++....
T Consensus 228 ~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 228 L--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp E--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred c--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 2 22223467899999999976 77555666667899999999987766655443
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=3.3e-13 Score=151.14 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=145.9
Q ss_pred CCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHH
Q 005073 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (715)
Q Consensus 360 ~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~ 439 (715)
.+.++.|++.++. ++... +.. +++|++|+|+++. +... . +..+++|++|+++++ .++...
T Consensus 63 l~~L~~L~Ls~n~-l~~~~----~~~--l~~L~~L~Ls~N~--l~~~------~--~~~l~~L~~L~L~~N-~l~~l~-- 122 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTLD----LSQ--NTNLTYLACDSNK--LTNL------D--VTPLTKLTYLNCDTN-KLTKLD-- 122 (457)
T ss_dssp CTTCSEEECCSSC-CSCCC----CTT--CTTCSEEECCSSC--CSCC------C--CTTCTTCCEEECCSS-CCSCCC--
T ss_pred cCCCCEEEccCCc-CCeEc----ccc--CCCCCEEECcCCC--Ccee------e--cCCCCcCCEEECCCC-cCCeec--
Confidence 3578889998886 44311 223 3899999998876 3332 1 467889999999885 444422
Q ss_pred HHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHH
Q 005073 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (715)
Q Consensus 440 ~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ 519 (715)
+..+++|+.|++++|. ++... +.. + ++|+.|++++|..+... .+..+++|+.|+++++. ++.-.
T Consensus 123 --~~~l~~L~~L~l~~N~-l~~l~---l~~-l-~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~l~--- 186 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNT-LTEID---VSH-N-TQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNK-ITELD--- 186 (457)
T ss_dssp --CTTCTTCCEEECTTSC-CSCCC---CTT-C-TTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSC-CCCCC---
T ss_pred --CCCCCcCCEEECCCCc-cceec---ccc-C-CcCCEEECCCCCccccc----ccccCCcCCEEECCCCc-cceec---
Confidence 4667899999999874 32211 222 2 78999999998655543 36678899999998763 33211
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHH
Q 005073 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFL 599 (715)
Q Consensus 520 ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll 599 (715)
+ ...++|+.|++++| .++... + ..+++|+.|++++| .++... ...+++|+.|++++|.++...+.
T Consensus 187 -l-~~l~~L~~L~l~~N-~l~~~~---l-~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N~l~~~~~~--- 251 (457)
T 3bz5_A 187 -V-SQNKLLNRLNCDTN-NITKLD---L-NQNIQLTFLDCSSN-KLTEID----VTPLTQLTYFDCSVNPLTELDVS--- 251 (457)
T ss_dssp -C-TTCTTCCEEECCSS-CCSCCC---C-TTCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCCCT---
T ss_pred -c-ccCCCCCEEECcCC-cCCeec---c-ccCCCCCEEECcCC-cccccC----ccccCCCCEEEeeCCcCCCcCHH---
Confidence 1 23378999999988 465542 2 34788999999885 565532 34578899999998877653221
Q ss_pred HhCCCCccEE----------EeCCCCCCCHHHHHHHHhcCCCccEEEecCCCC
Q 005073 600 ETAGEPLKEL----------SLNNVRKVADNTALSLAKRSNKLVNLDLSWCRN 642 (715)
Q Consensus 600 ~~~~~~L~~L----------~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~ 642 (715)
..++|+.| ++++|..++... ...|++|+.|++++|..
T Consensus 252 --~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 252 --TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp --TCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTT
T ss_pred --HCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcc
Confidence 12444444 444443333211 13568888888888753
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.28 E-value=5.2e-13 Score=143.74 Aligned_cols=257 Identities=18% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++. +... ....+..+++|+.|+|+++ .++..... .+..+++|++|++++|. ++......+.
T Consensus 52 ~~L~~L~l~~n~--i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYI-----SNSDLQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYNY-LSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSC--CCEE-----CTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSSCCHHHHT
T ss_pred ccCcEEECCCCc--Cccc-----CHHHhccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCCc-CCcCCHhHhC
Confidence 456666666654 2211 0112355666666666663 33321111 12445666666666652 2211111121
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|++|++++|... .......+..+++|++|+++++..+....... + ...++|++|++++| .++......+.
T Consensus 122 ~-l-~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~l~ 195 (353)
T 2z80_A 122 P-L-SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-F-AGLTFLEELEIDAS-DLQSYEPKSLK 195 (353)
T ss_dssp T-C-TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-T-TTCCEEEEEEEEET-TCCEECTTTTT
T ss_pred C-C-ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH-c-cCCCCCCEEECCCC-CcCccCHHHHh
Confidence 1 1 56666766666422 11000134566677777776543222110000 1 11256777777666 24432222222
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHH-HhCCCCccEEEeCCCCCCCHHHHHHH--
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFL-ETAGEPLKELSLNNVRKVADNTALSL-- 625 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll-~~~~~~L~~L~L~~c~~I~d~~l~~L-- 625 (715)
.+++|++|+++++ .++.... .+...+++|+.|+|++|.++......+. ......++.++|.++ .+++..+..+
T Consensus 196 -~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~ 271 (353)
T 2z80_A 196 -SIQNVSHLILHMK-QHILLLE-IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMK 271 (353)
T ss_dssp -TCSEEEEEEEECS-CSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHH
T ss_pred -ccccCCeecCCCC-ccccchh-hhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHH
Confidence 3566777777664 3443222 2233456777777776655442111110 012245666666665 4555544433
Q ss_pred -HhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 626 -AKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 626 -~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
...+++|++|+|++|. ++.. ...++..+++|+.|++++++
T Consensus 272 ~l~~l~~L~~L~Ls~N~-l~~i-~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQ-LKSV-PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCCCC-CCcc-CHHHHhcCCCCCEEEeeCCC
Confidence 2356677777777653 4411 11222456677777777654
No 44
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.27 E-value=2.7e-12 Score=124.44 Aligned_cols=92 Identities=14% Similarity=0.298 Sum_probs=51.6
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc---C
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR---S 629 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~---~ 629 (715)
.|+.|++++|. +++.|+..+. .|++| ++|+|++|..|+|.++..++.. +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L--------------------------~~L~L~~C~~ItD~gL~~L~~~~~~~ 113 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYV--------------------------EKIRLCKCHYIEDGCLERLSQLENLQ 113 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCC--------------------------CEEEEESCTTCCHHHHHHHHTCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCC--------------------------CEEEeCCCCccCHHHHHHHHhccccc
Confidence 46666666663 6666665553 35545 4555555555555555555431 3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccc
Q 005073 630 NKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAF 673 (715)
Q Consensus 630 ~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~ 673 (715)
++|++|+|++|.+|||.++..+. .|++|+.|+|++|++||+.+
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHH
T ss_pred CCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchH
Confidence 45666666666556666665554 35666666666666666544
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=4.8e-13 Score=156.49 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=59.7
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcC--CCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcC
Q 005073 552 PRLCTLDLSNLYKLTDFGIGYLANGC--QAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRS 629 (715)
Q Consensus 552 p~L~~L~Ls~c~~ltd~gl~~l~~~~--~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~ 629 (715)
++|+.|++++| .++......+. .+ ++|+.|+|++|.+.......+ ...++|+.|+|+++. ++... ......+
T Consensus 222 ~~L~~L~L~~n-~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~-~~~~~~l 295 (680)
T 1ziw_A 222 TSIRNLSLSNS-QLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNN-IQHLF-SHSLHGL 295 (680)
T ss_dssp SCCCEEECTTS-CCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCC-BSEEC-TTTTTTC
T ss_pred ccccEEEccCC-cccccChhHhh-ccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCc-cCccC-hhhhcCC
Confidence 55666666664 33322111111 12 347777777766543211111 122677777777653 22111 0112345
Q ss_pred CCccEEEecCCCCCCHHHHHH-------HHhcCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCC
Q 005073 630 NKLVNLDLSWCRNLSDEALGL-------IVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 630 ~~L~~LdLs~C~~Ltd~~l~~-------L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
++|+.|++++|..-....+.. .+..+++|+.|++++|. ++...... ..+++|+.+.+..
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCC
Confidence 666666666542111111100 12346677777777653 44333222 2456666666554
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=2.1e-12 Score=147.86 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=63.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHH-HHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDE-AIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~-~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
.+++|+.|++++| .+++.... ....+++|+.|+|++|.+... .+...+ ...++|+.|+|+++. ++..........
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred CCCCceEEECCCC-ccccchhh-hhcccCCCCEEECCCCCcCCcccchhhh-cCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 4566667776664 44432111 123456677777777766541 111111 122567777776653 221000011223
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcC-CCccEEEEecCCCCCcccccCCCCCCeeEEecC
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSC-LSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLK 688 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~-~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~ 688 (715)
+++|++|++++|. +++. +...+ ++|+.|++++| +++..+.....++.|+.+.+.
T Consensus 427 l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 427 AESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred cccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence 5666677766654 5421 22233 46777777765 455443333355666666554
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.8e-12 Score=149.83 Aligned_cols=293 Identities=14% Similarity=0.094 Sum_probs=188.9
Q ss_pred CCccEEEEcCCC--CCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH
Q 005073 361 GSPTEIRLRDCS--WLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 361 ~~L~~L~L~~c~--~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
.+++.|++.++. .+... ++..+ ++|++|+|+++. +... ....+..+++|+.|+|+++. ++....
T Consensus 51 ~~l~~l~l~~~~l~~lp~~----~~~~l--~~L~~L~L~~n~--l~~~-----~~~~~~~l~~L~~L~L~~n~-l~~~~~ 116 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAA----LLDSF--RQVELLNLNDLQ--IEEI-----DTYAFAYAHTIQKLYMGFNA-IRYLPP 116 (597)
T ss_dssp CCCSEEEESSCEESEECTH----HHHHC--CCCSEEECTTSC--CCEE-----CTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCceEEEeeCCCCCCcCHH----HHccC--CCCcEEECCCCC--CCCC-----ChHHhcCCCCCCEEECCCCc-CCCCCH
Confidence 467888888874 23332 34445 899999999886 3321 12234788999999999854 443211
Q ss_pred HHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHH
Q 005073 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~ 518 (715)
..+..+++|+.|+|++|. ++......+. .+ ++|+.|+|++|..... ....+..+++|++|+++++. ++...
T Consensus 117 -~~~~~l~~L~~L~L~~n~-l~~l~~~~~~-~l-~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~-- 187 (597)
T 3oja_B 117 -HVFQNVPLLTVLVLERND-LSSLPRGIFH-NT-PKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNR-LTHVD-- 187 (597)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TC-TTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSC-CSBCC--
T ss_pred -HHHcCCCCCCEEEeeCCC-CCCCCHHHhc-cC-CCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCC-CCCcC--
Confidence 223668999999999974 2211111111 12 7899999999964321 22347889999999998863 33221
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHH
Q 005073 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAF 598 (715)
Q Consensus 519 ~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~L 598 (715)
....++|+.|++++| .++.. ...++|+.|++++| .++.... ...++|+.|+|++|.+++. ..+
T Consensus 188 ---~~~l~~L~~L~l~~n-~l~~l------~~~~~L~~L~ls~n-~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYN-LLSTL------AIPIAVEELDASHN-SINVVRG----PVNVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp ---GGGCTTCSEEECCSS-CCSEE------ECCTTCSEEECCSS-CCCEEEC----SCCSCCCEEECCSSCCCCC--GGG
T ss_pred ---hhhhhhhhhhhcccC-ccccc------cCCchhheeeccCC-ccccccc----ccCCCCCEEECCCCCCCCC--hhh
Confidence 123489999999998 45532 23578999999986 4543211 1246899999999988763 212
Q ss_pred HHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCC
Q 005073 599 LETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHS 678 (715)
Q Consensus 599 l~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~ 678 (715)
. ..++|+.|+|+++ .++.... .....+++|+.|+|++|. ++. +......+++|+.|+|++|. ++..+.....
T Consensus 251 -~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~ 322 (597)
T 3oja_B 251 -L-NYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQ 322 (597)
T ss_dssp -G-GCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHH
T ss_pred -c-cCCCCCEEECCCC-ccCCCCH-HHhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCC-CCccCccccc
Confidence 1 2489999999997 4443211 122468999999999975 653 22223458999999999974 5544333335
Q ss_pred CCCeeEEecCC----------CCCCCeeecCCC
Q 005073 679 NPDVQIIGLKM----------SPVLEHVKVPDF 701 (715)
Q Consensus 679 ~~~L~~l~L~~----------cp~L~~L~l~~~ 701 (715)
++.|+.+.+.. ++.|+.|+++++
T Consensus 323 l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp HTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 66777776654 445555555544
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=2.6e-14 Score=151.89 Aligned_cols=249 Identities=21% Similarity=0.172 Sum_probs=160.0
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCC
Q 005073 406 YILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQS 485 (715)
Q Consensus 406 ~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~ 485 (715)
..+...+..+...+++|++|+|+++ .++..... .+..+++|+.|+|++|....... +.. + ++|+.|++++|.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~-l-~~L~~L~Ls~n~- 91 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNVLYETLD---LES-L-STLRTLDLNNNY- 91 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE---ETT-C-TTCCEEECCSSE-
T ss_pred cchhhhHHHHhccCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCcCCcchh---hhh-c-CCCCEEECcCCc-
Confidence 3445556677778889999999985 45443222 24678999999999975322111 222 2 789999999985
Q ss_pred chhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCC
Q 005073 486 LNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKL 565 (715)
Q Consensus 486 l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~l 565 (715)
+.. +..+++|++|+++++. +.... ....++|+.|++++| .++......+. .+++|+.|++++| .+
T Consensus 92 l~~------l~~~~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l 156 (317)
T 3o53_A 92 VQE------LLVGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG-CRSRVQYLDLKLN-EI 156 (317)
T ss_dssp EEE------EEECTTCCEEECCSSC-CSEEE-----ECCCSSCEEEECCSS-CCCSGGGBCTG-GGSSEEEEECTTS-CC
T ss_pred ccc------ccCCCCcCEEECCCCc-cCCcC-----ccccCCCCEEECCCC-CCCCccchhhh-ccCCCCEEECCCC-CC
Confidence 322 3356899999998763 33211 112378999999998 46653322222 4789999999985 67
Q ss_pred ChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCH
Q 005073 566 TDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSD 645 (715)
Q Consensus 566 td~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd 645 (715)
+......+...+++|+.|+|++|.+..... . ...++|+.|+|+++ .++... .-...+++|+.|+|++|. ++.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~--~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~L~~N~-l~~ 228 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--Q--VVFAKLKTLDLSSN-KLAFMG--PEFQSAAGVTWISLRNNK-LVL 228 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--C--CCCTTCCEEECCSS-CCCEEC--GGGGGGTTCSEEECTTSC-CCE
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccccc--c--cccccCCEEECCCC-cCCcch--hhhcccCcccEEECcCCc-ccc
Confidence 765555565568899999999998765311 1 12478999999986 444211 113457899999999964 652
Q ss_pred HHHHHHHhcCCCccEEEEecCCCCC-cccccC-CCCCCeeEEecC
Q 005073 646 EALGLIVDSCLSLRMLKLFGCSQIT-NAFLDG-HSNPDVQIIGLK 688 (715)
Q Consensus 646 ~~l~~L~~~~~~L~~L~L~gC~~lt-~~~l~~-~~~~~L~~l~L~ 688 (715)
+......+++|+.|++++++ ++ +..... ..++.|+.+.+.
T Consensus 229 --l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 --IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp --ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHH
T ss_pred --hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECC
Confidence 22223467899999999875 44 322221 144455544444
No 49
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.23 E-value=1.2e-11 Score=119.93 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=85.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
.+|++|++++|. |++.++..+. .|++|++|+|++|..++|.|+..++.. . ..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~-~----------------------~~~~~ 115 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQL-E----------------------NLQKS 115 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTC-H----------------------HHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhc-c----------------------cccCC
Confidence 479999999996 9999999985 699999999999999999999988752 0 00136
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHH--HHHHhcCCCccE
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEAL--GLIVDSCLSLRM 660 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l--~~L~~~~~~L~~ 660 (715)
|++|+|++|..|||.++..++ .|++|++|+|++|+.||+.++ ..+-..+|+++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 777777777778888877775 478888888888888887663 445556776653
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=3.8e-12 Score=136.93 Aligned_cols=257 Identities=13% Similarity=0.107 Sum_probs=165.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
.++|++|+|+++ .++..... .+..+++|+.|+++++. ++......+.. + ++|++|++++|... .. ....+..+
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l-~~L~~L~Ls~n~l~-~~-~~~~~~~l 123 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNS-DLQRCVNLQALVLTSNG-INTIEEDSFSS-L-GSLEHLDLSYNYLS-NL-SSSWFKPL 123 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTSC-CCEECTTTTTT-C-TTCCEEECCSSCCS-SC-CHHHHTTC
T ss_pred cccCcEEECCCC-cCcccCHH-HhccCCCCCEEECCCCc-cCccCHhhcCC-C-CCCCEEECCCCcCC-cC-CHhHhCCC
Confidence 468999999985 45542211 23678999999999973 33321112222 2 78999999999643 21 23447889
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|++|+++++. +..-.....+ ...++|+.|++++|..++......+. .+++|+.|++++| .++...... ...++
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~-l~~l~ 198 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS-DLQSYEPKS-LKSIQ 198 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET-TCCEECTTT-TTTCS
T ss_pred ccCCEEECCCCC-CcccCchhhh-ccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC-CcCccCHHH-Hhccc
Confidence 999999998863 3211000011 12389999999998545543322333 4789999999986 555432222 34578
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHH--HHhcCCCccEEEecCCCCCCHHHHHHH---Hh
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALS--LAKRSNKLVNLDLSWCRNLSDEALGLI---VD 653 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~--L~~~~~~L~~LdLs~C~~Ltd~~l~~L---~~ 653 (715)
+|+.|++++|.+.......+ . ..++|+.|+|+++. ++...... ....++.|+.+++.++. +++.++..+ ..
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~-~-~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFV-D-VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLN 274 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHH-H-HTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHH
T ss_pred cCCeecCCCCccccchhhhh-h-hcccccEEECCCCc-cccccccccccccccchhhcccccccc-ccCcchhhhHHHHh
Confidence 99999999998865433222 2 23899999999864 43321111 12457889999999964 888776554 34
Q ss_pred cCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCCCCC
Q 005073 654 SCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKMSPV 692 (715)
Q Consensus 654 ~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~cp~ 692 (715)
.+++|+.|++++| +++..+... ..+++|+.+.+..+|.
T Consensus 275 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6899999999997 576554432 3566777777665543
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=7.8e-14 Score=159.19 Aligned_cols=155 Identities=18% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++|. ++..... ...+++|+.|++++| .++..........+++|+.|+|++|.+.......+ ...++
T Consensus 373 ~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~ 446 (570)
T 2z63_A 373 TSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSS 446 (570)
T ss_dssp SCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTT
T ss_pred CccCEEECCCCc-ccccccc--ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCc
Confidence 566666666652 2221111 123566666666664 22221111122346667777777665433211111 11256
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCCCCeeE
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQI 684 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~ 684 (715)
|+.|+|++|. +++..+......+++|++|+|++|. +++.....+ ..+++|+.|++++| +++...... ..+++|+.
T Consensus 447 L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 447 LEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcE
Confidence 7777777753 2211111222346777777777764 543322222 35677777777776 455544332 24555555
Q ss_pred EecCCC
Q 005073 685 IGLKMS 690 (715)
Q Consensus 685 l~L~~c 690 (715)
+.+..+
T Consensus 523 L~l~~N 528 (570)
T 2z63_A 523 IWLHTN 528 (570)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 555543
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.20 E-value=5.4e-13 Score=142.13 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=101.6
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++. +... ....+..+++|++|+|+++ .++.... ..+..+++|+.|+++++. ++. +.
T Consensus 52 ~~l~~L~L~~n~--i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~-----l~ 116 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEI-----KDGDFKNLKNLHTLILINN-KISKISP-GAFAPLVKLERLYLSKNQ-LKE-----LP 116 (330)
T ss_dssp TTCCEEECCSSC--CCCB-----CTTTTTTCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSC-CSB-----CC
T ss_pred CCCeEEECCCCc--CCEe-----ChhhhccCCCCCEEECCCC-cCCeeCH-HHhcCCCCCCEEECCCCc-CCc-----cC
Confidence 567777776665 2221 0112356677777777664 3332111 112456677777777653 221 11
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHH-HHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFV-RGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l-~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L 547 (715)
....++|++|++++|..... ....+..+++|+.|+++++. +....+ ...+ ...++|+.|++++|. ++....
T Consensus 117 ~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~l~~--- 188 (330)
T 1xku_A 117 EKMPKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNP-LKSSGIENGAF-QGMKKLSYIRIADTN-ITTIPQ--- 188 (330)
T ss_dssp SSCCTTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGG-GGCTTCCEEECCSSC-CCSCCS---
T ss_pred hhhcccccEEECCCCccccc--CHhHhcCCccccEEECCCCc-CCccCcChhhc-cCCCCcCEEECCCCc-cccCCc---
Confidence 11125677777776643221 23345666777777776542 211100 0111 122566777776652 332110
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHh
Q 005073 548 AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAK 627 (715)
Q Consensus 548 ~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~ 627 (715)
...++|+.|++++| .++......+ ..+++|+.|+|++|.+.......+. ..++|++|+|+++ .++. +.....
T Consensus 189 -~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~--lp~~l~ 260 (330)
T 1xku_A 189 -GLPPSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNN-KLVK--VPGGLA 260 (330)
T ss_dssp -SCCTTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSS-CCSS--CCTTTT
T ss_pred -cccccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCC-cCcc--CChhhc
Confidence 01256666666664 3443222222 2356666666666655432111111 1245555555554 2221 111112
Q ss_pred cCCCccEEEecCC
Q 005073 628 RSNKLVNLDLSWC 640 (715)
Q Consensus 628 ~~~~L~~LdLs~C 640 (715)
.+++|++|+|++|
T Consensus 261 ~l~~L~~L~l~~N 273 (330)
T 1xku_A 261 DHKYIQVVYLHNN 273 (330)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 3455566666554
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.19 E-value=7.4e-13 Score=151.12 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=36.3
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCc--ccccCCCCCCeeEEecC-------------CCCC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITN--AFLDGHSNPDVQIIGLK-------------MSPV 692 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~--~~l~~~~~~~L~~l~L~-------------~cp~ 692 (715)
.+++|++|++++|. ++... ......+++|+.|++++|. +++ .+.....++.|+.+.+. .++.
T Consensus 419 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 45666666666653 32211 1122356777777777764 332 11112255666665443 2455
Q ss_pred CCeeecCCC
Q 005073 693 LEHVKVPDF 701 (715)
Q Consensus 693 L~~L~l~~~ 701 (715)
|+.|+++++
T Consensus 496 L~~L~l~~n 504 (570)
T 2z63_A 496 LQVLNMASN 504 (570)
T ss_dssp CCEEECCSS
T ss_pred CCEEeCCCC
Confidence 666666554
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=5.7e-12 Score=147.34 Aligned_cols=313 Identities=15% Similarity=0.107 Sum_probs=182.8
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
..++.|++.++. ++... ...+..+ ++|++|+|+++.. ... .+.....+++|+.|+|+++ .++.... .
T Consensus 25 ~~l~~L~Ls~n~-l~~~~-~~~~~~l--~~L~~L~Ls~n~l--~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~~-~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLP-AANFTRY--SQLTSLDVGFNTI--SKL-----EPELCQKLPMLKVLNLQHN-ELSQLSD-K 91 (680)
T ss_dssp TTCSEEECCSSC-CCCCC-GGGGGGG--TTCSEEECCSSCC--CCC-----CTTHHHHCTTCCEEECCSS-CCCCCCT-T
T ss_pred CCCcEEECCCCC-CCCcC-HHHHhCC--CcCcEEECCCCcc--Ccc-----CHHHHhcccCcCEEECCCC-ccCccCh-h
Confidence 578889998875 32210 1123444 7899999988752 221 1123356789999999885 3432111 1
Q ss_pred HHhhCCCCCEEeeccCCC--CChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHH
Q 005073 441 LVTSAPALRSINLSQCSL--LSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~--l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~ 518 (715)
.+..+++|++|++++|.. +....+.. + ++|++|++++|..... ....+..+++|++|+++++. +......
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l-~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 163 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVK----Q-KNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNK-IQALKSE 163 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTT----C-TTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSC-CCCBCHH
T ss_pred hhccCCCCCEEECCCCccCccChhHccc----c-CCCCEEECCCCccccc--CchhhcccccCCEEEccCCc-ccccCHH
Confidence 235678999999988732 22222221 2 7899999998853221 12335678899999998763 2221111
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHh--cCCCccEEEccCCCCCHHHHH
Q 005073 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN--GCQAIQTLKLCRNAFSDEAIA 596 (715)
Q Consensus 519 ~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~--~~~~Lk~L~Ls~~~isd~~l~ 596 (715)
.+.....++|+.|++++| .++......+. .+++|+.|.+.++ .+.......+.. ..++|+.|++++|.+......
T Consensus 164 ~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN-QIKEFSPGCFH-AIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp HHGGGTTCEESEEECTTC-CCCCBCTTGGG-GSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred HhhccccccccEEECCCC-cccccChhhhh-hhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 111112378999999888 35443322222 4778899998875 555544443331 247899999999877653222
Q ss_pred HHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccc---
Q 005073 597 AFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAF--- 673 (715)
Q Consensus 597 ~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~--- 673 (715)
.+.....++|+.|+|+++. ++.... .....+++|++|++++|. ++......+ ..+++|+.|++++|..-....
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp TTGGGGGSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------
T ss_pred HhhccCcCCCCEEECCCCC-cCccCc-ccccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEeccchhhhccccccc
Confidence 2222222469999999874 432111 112457899999999964 543222222 468899999998753221110
Q ss_pred ------ccCCCCCCeeEEecCC-------------CCCCCeeecCCC
Q 005073 674 ------LDGHSNPDVQIIGLKM-------------SPVLEHVKVPDF 701 (715)
Q Consensus 674 ------l~~~~~~~L~~l~L~~-------------cp~L~~L~l~~~ 701 (715)
.....++.|+.+.+.. ++.|+.|+++++
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 0123567777777764 345666666553
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=7.1e-13 Score=141.23 Aligned_cols=272 Identities=14% Similarity=0.152 Sum_probs=168.0
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.++. ++... ...+..+ ++|++|+|+++.. ... .+..+..+++|++|+|+++ .++....
T Consensus 52 ~~l~~L~L~~n~-i~~~~-~~~~~~l--~~L~~L~L~~n~l--~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~l~~-- 117 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIK-DGDFKNL--KNLHTLILINNKI--SKI-----SPGAFAPLVKLERLYLSKN-QLKELPE-- 117 (330)
T ss_dssp TTCCEEECCSSC-CCCBC-TTTTTTC--TTCCEEECCSSCC--CCB-----CTTTTTTCTTCCEEECCSS-CCSBCCS--
T ss_pred CCCeEEECCCCc-CCEeC-hhhhccC--CCCCEEECCCCcC--Cee-----CHHHhcCCCCCCEEECCCC-cCCccCh--
Confidence 467889998875 33210 0122334 8999999998863 221 1233577899999999985 4442110
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
...++|++|+++++. +.......+.. + ++|+.|++++|...........+..+++|++|+++++. +.. +
T Consensus 118 --~~~~~L~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-----l 186 (330)
T 1xku_A 118 --KMPKTLQELRVHENE-ITKVRKSVFNG-L-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT-----I 186 (330)
T ss_dssp --SCCTTCCEEECCSSC-CCBBCHHHHTT-C-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS-----C
T ss_pred --hhcccccEEECCCCc-ccccCHhHhcC-C-ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc-----C
Confidence 123799999999974 33322222332 2 78999999999753322234557889999999998864 321 1
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
.....++|+.|++++| .++......+. .+++|+.|+|++| .++......+ ..+++|+.|+|++|.+.. +...+.
T Consensus 187 ~~~~~~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~--lp~~l~ 260 (330)
T 1xku_A 187 PQGLPPSLTELHLDGN-KITKVDAASLK-GLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNKLVK--VPGGLA 260 (330)
T ss_dssp CSSCCTTCSEEECTTS-CCCEECTGGGT-TCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSCCSS--CCTTTT
T ss_pred CccccccCCEEECCCC-cCCccCHHHhc-CCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCcCcc--CChhhc
Confidence 1122378999999998 46654333343 5899999999996 5655332223 458999999999998763 111111
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHH-----hcCCCccEEEecCCCCCCHHHH-HHHHhcCCCccEEEEecC
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLA-----KRSNKLVNLDLSWCRNLSDEAL-GLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~-----~~~~~L~~LdLs~C~~Ltd~~l-~~L~~~~~~L~~L~L~gC 666 (715)
..++|+.|+|+++. ++......+. ...+.|+.|++++++ +....+ ...+.++.+|+.|+++++
T Consensus 261 -~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 -DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 23799999999863 4422111111 124678888888865 432111 122345677888877764
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=4.1e-13 Score=161.51 Aligned_cols=302 Identities=17% Similarity=0.139 Sum_probs=170.0
Q ss_pred hCCCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH
Q 005073 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (715)
Q Consensus 359 ~~~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l 438 (715)
..+.++.|+|.++. ++... ...+..+ ++|++|+|++|.. .... .+..+.++++|+.|+|+++ .++...
T Consensus 22 lp~~l~~LdLs~N~-i~~i~-~~~~~~l--~~L~~LdLs~n~~-~~~i-----~~~~f~~L~~L~~L~Ls~N-~l~~~~- 89 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVT-ASSFPFL--EQLQLLELGSQYT-PLTI-----DKEAFRNLPNLRILDLGSS-KIYFLH- 89 (844)
T ss_dssp SCTTCCEEEEESCC-CCEEC-SSSCSSC--CSCSEEEECTTCC-CCEE-----CTTTTSSCTTCCEEECTTC-CCCEEC-
T ss_pred CCCCcCEEECCCCc-CCccC-hhHCccc--ccCeEEeCCCCCC-cccc-----CHHHhcCCCCCCEEECCCC-cCcccC-
Confidence 34678999999876 43210 1122333 8999999999853 2110 0223578999999999985 444321
Q ss_pred HHHHhhCCCCCEEeeccCCCCChHHHHH--HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccc--cCH
Q 005073 439 KALVTSAPALRSINLSQCSLLSSTSVDI--LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIET--VTD 514 (715)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~c~~l~~~~l~~--L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~--isd 514 (715)
...+..+++|++|+|++|.. +...... +. .+ ++|++|+|++|.... ......+.++++|++|+++++.. +..
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~-~L-~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGL-SDAVLKDGYFR-NL-KALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCC-SSCCSTTCCCS-SC-SSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred HhHccCCcccCEeeCcCCCC-CcccccCcccc-cc-CCCCEEECCCCcccc-cccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 11245689999999999743 2211110 11 12 789999999986432 22234578999999999988632 222
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC------CccEEEecCCCCCChHHHHHHHh-------------
Q 005073 515 EFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP------RLCTLDLSNLYKLTDFGIGYLAN------------- 575 (715)
Q Consensus 515 ~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p------~L~~L~Ls~c~~ltd~gl~~l~~------------- 575 (715)
..+..+. .++|+.|+++.|. ++......+. .|+ .|+.|++++| .++......+..
T Consensus 166 ~~l~~l~---~~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 166 HELEPLQ---GKTLSFFSLAANS-LYSRVSVDWG-KCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp GGGHHHH---HCSSCCCEECCSB-SCCCCCCCCC-SSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred HHccccc---CCccceEECCCCc-cccccccchh-hcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecc
Confidence 3333332 1689999999884 4332111111 133 3999999986 333222111111
Q ss_pred ------------------------cCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCC
Q 005073 576 ------------------------GCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNK 631 (715)
Q Consensus 576 ------------------------~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~ 631 (715)
.+++|+.|+|++|.+.......+ ...++|+.|+|+++ .++.... .....+++
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~ 315 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYN-KINKIAD-EAFYGLDN 315 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESC-CCCEECT-TTTTTCSS
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCC-cCCCCCh-HHhcCCCC
Confidence 02567777777766543211111 12367777777775 3332111 11234677
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccC-CCCCCeeEEecCC
Q 005073 632 LVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDG-HSNPDVQIIGLKM 689 (715)
Q Consensus 632 L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~ 689 (715)
|++|+|++|. ++...... +..+++|+.|++++| .++...... ..+++|+.+.+..
T Consensus 316 L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 316 LQVLNLSYNL-LGELYSSN-FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCC-CSCCCSCS-CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCC-CCccCHHH-hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCC
Confidence 8888887754 43211111 235677888888776 455443322 2466677766543
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=1.8e-11 Score=140.14 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.++. ++... ...+..+ ++|++|+|+++. +... .+..+..+++|++|+|+++ .++. +..
T Consensus 52 ~~L~~L~Ls~N~-i~~~~-~~~~~~l--~~L~~L~Ls~N~--l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~--lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELR-MPDISFL--SELRVLRLSHNR--IRSL-----DFHVFLFNQDLEYLDVSHN-RLQN--ISC 117 (562)
T ss_dssp TTCCEEECCSSC-CCCCC-GGGTTTC--TTCCEEECCSCC--CCEE-----CTTTTTTCTTCCEEECTTS-CCCE--ECS
T ss_pred CCcCEEECCCCC-ccccC-hhhhccC--CCccEEECCCCC--CCcC-----CHHHhCCCCCCCEEECCCC-cCCc--cCc
Confidence 577888888775 32210 0122333 788888888775 3321 1223466788888888874 4442 111
Q ss_pred HHhhCCCCCEEeeccCCCCChHHH-HHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCC--CEEeecCc
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSV-DILADKLGSFIQELYINDCQSLNAMLILPALRKLKHL--EVLSVAGI 509 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l-~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~L--e~L~Ls~~ 509 (715)
. .+++|+.|++++|.. +...+ ..+.. + ++|+.|+++++.... . .+..+++| +.|+++++
T Consensus 118 ~--~l~~L~~L~Ls~N~l-~~l~~p~~~~~-l-~~L~~L~L~~n~l~~-~----~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDF-DVLPVCKEFGN-L-TKLTFLGLSAAKFRQ-L----DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp C--CCTTCSEEECCSSCC-SBCCCCGGGGG-C-TTCCEEEEECSBCCT-T----TTGGGTTSCEEEEEEEES
T ss_pred c--ccccCCEEECCCCCc-cccCchHhhcc-c-CcccEEecCCCcccc-C----chhhhhhceeeEEEeecc
Confidence 1 578888888888642 22111 11222 2 678888888875332 1 13334444 77777664
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.15 E-value=2.3e-13 Score=163.76 Aligned_cols=298 Identities=18% Similarity=0.097 Sum_probs=175.2
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHH-
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK- 439 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~- 439 (715)
..++.|++.+|..+..-. ...+..+ ++|++|+|+++.. ... .+..+..+++|++|+|++| .++.....
T Consensus 48 ~~L~~LdLs~n~~~~~i~-~~~f~~L--~~L~~L~Ls~N~l--~~~-----~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 116 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTID-KEAFRNL--PNLRILDLGSSKI--YFL-----HPDAFQGLFHLFELRLYFC-GLSDAVLKD 116 (844)
T ss_dssp CSCSEEEECTTCCCCEEC-TTTTSSC--TTCCEEECTTCCC--CEE-----CTTSSCSCSSCCCEECTTC-CCSSCCSTT
T ss_pred ccCeEEeCCCCCCccccC-HHHhcCC--CCCCEEECCCCcC--ccc-----CHhHccCCcccCEeeCcCC-CCCcccccC
Confidence 578999999985332100 1123344 8999999998873 221 1234578999999999985 44331111
Q ss_pred HHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC--CCCCEEeecCccccCHHHH
Q 005073 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL--KHLEVLSVAGIETVTDEFV 517 (715)
Q Consensus 440 ~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l--~~Le~L~Ls~~~~isd~~l 517 (715)
..+..+++|+.|+|++|.......-..+. .+ ++|+.|+|++|...... ...+..+ ++|+.|+++++.......
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~L-~~L~~L~Ls~N~i~~~~--~~~l~~l~~~~L~~L~L~~n~l~~~~~- 191 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFG-KL-NSLKSIDFSSNQIFLVC--EHELEPLQGKTLSFFSLAANSLYSRVS- 191 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGG-TC-SSCCEEEEESSCCCCCC--SGGGHHHHHCSSCCCEECCSBSCCCCC-
T ss_pred ccccccCCCCEEECCCCcccccccchhHh-hC-CCCCEEECCCCcCCeeC--HHHcccccCCccceEECCCCccccccc-
Confidence 12356899999999997432211001122 22 88999999998632211 1112223 789999998764322110
Q ss_pred HHHHHhc-----CCCccEEEecCCCCCChHHHHHHHh-------------------------------------cCCCcc
Q 005073 518 RGFVYAC-----GHNMKELILTDCVKLTDFSLKVIAE-------------------------------------TCPRLC 555 (715)
Q Consensus 518 ~~ll~~~-----~~~L~~L~Ls~c~~Ltd~~L~~L~~-------------------------------------~~p~L~ 555 (715)
..+ ..+ ..+|+.|++++|. ++......+.. .+++|+
T Consensus 192 ~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 192 VDW-GKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCC-CSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred cch-hhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 000 000 1249999999982 33221111111 136799
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEE
Q 005073 556 TLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNL 635 (715)
Q Consensus 556 ~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~L 635 (715)
.|+|++| .++... ......+++|+.|+|++|.+....-..+ ...++|+.|+|+++. ++... ......+++|+.|
T Consensus 270 ~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L 343 (844)
T 3j0a_A 270 HLDLSHG-FVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVAYI 343 (844)
T ss_dssp EEECTTC-CCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCCEE
T ss_pred EEECCCC-cccccC-hhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCC-CCccC-HHHhcCCCCCCEE
Confidence 9999886 444322 1223457899999999998765322222 123799999999874 33110 0112457899999
Q ss_pred EecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCC
Q 005073 636 DLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKM 689 (715)
Q Consensus 636 dLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~ 689 (715)
++++|. ++...... +..+++|+.|++++|. ++... .++.|+.+.+..
T Consensus 344 ~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~ 390 (844)
T 3j0a_A 344 DLQKNH-IAIIQDQT-FKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSG 390 (844)
T ss_dssp ECCSCC-CCCCCSSC-SCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEES
T ss_pred ECCCCC-CCccChhh-hcCCCCCCEEECCCCC-CCccc----CCCCcchhccCC
Confidence 999974 54322222 2468999999999974 55432 256666666553
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=3e-13 Score=144.35 Aligned_cols=246 Identities=17% Similarity=0.178 Sum_probs=142.0
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++. +... ....+..+++|++|+|+++ .++..... .+..+++|++|+++++. ++. +.
T Consensus 54 ~~l~~L~l~~n~--i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~-----l~ 118 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISEL-----RKDDFKGLQHLYALVLVNN-KISKIHEK-AFSPLRKLQKLYISKNH-LVE-----IP 118 (332)
T ss_dssp TTCCEEECCSSC--CCEE-----CTTTTTTCTTCCEEECCSS-CCCEECGG-GSTTCTTCCEEECCSSC-CCS-----CC
T ss_pred CCCeEEECCCCc--CCcc-----CHhHhhCCCCCcEEECCCC-ccCccCHh-HhhCcCCCCEEECCCCc-CCc-----cC
Confidence 678888887765 2221 1123467788888888874 44432111 13557888888888763 221 11
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHH-HHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFV-RGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l-~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L 547 (715)
....++|++|++++|..... ....+..+++|+.|+++++. +....+ ...+ .. .+|+.|++++|. ++....
T Consensus 119 ~~~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~-l~L~~L~l~~n~-l~~l~~--- 189 (332)
T 2ft3_A 119 PNLPSSLVELRIHDNRIRKV--PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAF-DG-LKLNYLRISEAK-LTGIPK--- 189 (332)
T ss_dssp SSCCTTCCEEECCSSCCCCC--CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSS-CS-CCCSCCBCCSSB-CSSCCS---
T ss_pred ccccccCCEEECCCCccCcc--CHhHhCCCccCCEEECCCCc-cccCCCCcccc-cC-CccCEEECcCCC-CCccCc---
Confidence 11226788888888753221 12236778888888887753 221111 0011 11 278888888873 443110
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHh
Q 005073 548 AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAK 627 (715)
Q Consensus 548 ~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~ 627 (715)
...++|+.|++++| .++......+ ..+++|+.|+|++|.+.......+. ..++|+.|+|+++ .++. +.....
T Consensus 190 -~~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~--lp~~l~ 261 (332)
T 2ft3_A 190 -DLPETLNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDNN-KLSR--VPAGLP 261 (332)
T ss_dssp -SSCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCSS-CCCB--CCTTGG
T ss_pred -cccCCCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCCC-cCee--cChhhh
Confidence 11367888888875 4544322222 3467888888888876542211121 2378888888886 3441 112234
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhc-----CCCccEEEEecCC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDS-----CLSLRMLKLFGCS 667 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~-----~~~L~~L~L~gC~ 667 (715)
.+++|+.|++++|. ++..+...+... .+.|+.|++++++
T Consensus 262 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 262 DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 57889999999864 654433333221 4678899998876
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=3.6e-12 Score=136.29 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=118.7
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhc
Q 005073 418 SLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRK 497 (715)
Q Consensus 418 ~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~ 497 (715)
..++++.|+|+++ .++. +..-+..+++|+.|+|++|.. +.. ...+.. + ++|+.|+|++|... .+...+..
T Consensus 79 ~~~~l~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~n~l-~~l-p~~~~~-l-~~L~~L~Ls~n~l~---~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQ--FPDQAFRLSHLQHMTIDAAGL-MEL-PDTMQQ-F-AGLETLTLARNPLR---ALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEESS-CCSS--CCSCGGGGTTCSEEEEESSCC-CCC-CSCGGG-G-TTCSEEEEESCCCC---CCCGGGGG
T ss_pred cccceeEEEccCC-Cchh--cChhhhhCCCCCEEECCCCCc-cch-hHHHhc-c-CCCCEEECCCCccc---cCcHHHhc
Confidence 3567888888874 3331 111123467888888877632 210 011111 2 67777777777532 13344667
Q ss_pred CCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC
Q 005073 498 LKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC 577 (715)
Q Consensus 498 l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~ 577 (715)
+++|++|++++|..+... ...+..+.+.+. ...+++|+.|+|++| .++. +......+
T Consensus 149 l~~L~~L~L~~n~~~~~~---------p~~~~~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~--lp~~l~~l 205 (328)
T 4fcg_A 149 LNRLRELSIRACPELTEL---------PEPLASTDASGE-----------HQGLVNLQSLRLEWT-GIRS--LPASIANL 205 (328)
T ss_dssp CTTCCEEEEEEETTCCCC---------CSCSEEEC-CCC-----------EEESTTCCEEEEEEE-CCCC--CCGGGGGC
T ss_pred CcCCCEEECCCCCCcccc---------ChhHhhccchhh-----------hccCCCCCEEECcCC-CcCc--chHhhcCC
Confidence 777777777765432210 011111111110 012555666666554 3331 11112345
Q ss_pred CCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 005073 578 QAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLS 657 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~ 657 (715)
++|+.|+|++|.+.. +..-+. ..++|+.|+|++|...+. +......+++|++|+|++|..++. .... ...+++
T Consensus 206 ~~L~~L~L~~N~l~~--l~~~l~-~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~-~~~l~~ 278 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA--LGPAIH-HLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLD-IHRLTQ 278 (328)
T ss_dssp TTCCEEEEESSCCCC--CCGGGG-GCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTT-GGGCTT
T ss_pred CCCCEEEccCCCCCc--Cchhhc-cCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchh-hhcCCC
Confidence 566666666665542 110011 125666666666544331 111123578888888888764431 1112 346888
Q ss_pred ccEEEEecCCCCCcccccCCCCCCeeEEecC
Q 005073 658 LRMLKLFGCSQITNAFLDGHSNPDVQIIGLK 688 (715)
Q Consensus 658 L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~ 688 (715)
|+.|+|++|..++..+-....++.|+++.+.
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 8888888887776665544466666666543
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.10 E-value=3.2e-13 Score=144.11 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=6.0
Q ss_pred cCCCccEEEEec
Q 005073 654 SCLSLRMLKLFG 665 (715)
Q Consensus 654 ~~~~L~~L~L~g 665 (715)
.+++|+.|++++
T Consensus 262 ~l~~L~~L~l~~ 273 (332)
T 2ft3_A 262 DLKLLQVVYLHT 273 (332)
T ss_dssp GCTTCCEEECCS
T ss_pred cCccCCEEECCC
Confidence 344555555554
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=1.3e-12 Score=147.41 Aligned_cols=238 Identities=16% Similarity=0.113 Sum_probs=156.1
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++.. .+. .+..+..+++|+.|+|++|. ++... . +..+++|+.|+|++|. ++...
T Consensus 34 ~~L~~L~Ls~n~l--~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~----- 96 (487)
T 3oja_A 34 WNVKELDLSGNPL--SQI-----SAADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQELL----- 96 (487)
T ss_dssp GGCCEEECCSSCC--CCC-----CGGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSE-EEEEE-----
T ss_pred CCccEEEeeCCcC--CCC-----CHHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCc-CCCCC-----
Confidence 5899999988763 321 12345788999999999854 43211 1 4667899999999873 22211
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
..++|+.|++++|...... ...+++|+.|+++++. ++...... + ..+++|+.|+|++| .++......+.
T Consensus 97 --~~~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~-l~~~~~~~-~-~~l~~L~~L~Ls~N-~l~~~~~~~l~ 165 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNK-ITMLRDLD-E-GCRSRVQYLDLKLN-EIDTVNFAELA 165 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEE-----ECCCSSCEEEECCSSC-CCSGGGBC-G-GGGSSEEEEECTTS-CCCEEEGGGGG
T ss_pred --CCCCcCEEECcCCcCCCCC-----ccccCCCCEEECCCCC-CCCCCchh-h-cCCCCCCEEECCCC-CCCCcChHHHh
Confidence 1168999999998643321 2356889999998764 33211101 1 12378999999998 57765555555
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..+++|+.|+|++| .++.. ... ..+++|+.|+|++|.++..... +. ..++|+.|+|+++ .++. +......
T Consensus 166 ~~l~~L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N-~l~~--lp~~l~~ 235 (487)
T 3oja_A 166 ASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN-KLVL--IEKALRF 235 (487)
T ss_dssp GGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS-CCCE--ECTTCCC
T ss_pred hhCCcccEEecCCC-ccccc--ccc-ccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCC-cCcc--cchhhcc
Confidence 56889999999986 55543 111 2478999999999987652111 11 2378999999986 4442 2222345
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEec
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFG 665 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~g 665 (715)
+++|+.|++++|+ ++...+..+...++.|+.|.+.+
T Consensus 236 l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 236 SQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEeccc
Confidence 7899999999976 76555656666788888887753
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=1.6e-13 Score=145.70 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=53.5
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCC--ChHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLL--SSTSVDI 466 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l--~~~~l~~ 466 (715)
.+++.|+|+++.. .... .++..+..+++|++|+|++++.+.... ...+..+++|++|+++++... ....+
T Consensus 50 ~~l~~L~L~~~~l--~~~~---~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNL--PKPY---PIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFL-- 121 (313)
T ss_dssp CCEEEEEEECCCC--SSCE---ECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGG--
T ss_pred ceEEEEECCCCCc--cCCc---ccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCHHH--
Confidence 4788888887763 2100 012234567777888777423222111 111345677777777765321 11111
Q ss_pred HHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc
Q 005073 467 LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (715)
Q Consensus 467 L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~ 509 (715)
.. + ++|++|+|++|..... +...+..+++|++|+++++
T Consensus 122 -~~-l-~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 122 -SQ-I-KTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp -GG-C-TTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSS
T ss_pred -hC-C-CCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCC
Confidence 11 1 5666666666642211 1223455666666666554
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=1.2e-12 Score=147.76 Aligned_cols=230 Identities=21% Similarity=0.175 Sum_probs=148.2
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCC
Q 005073 406 YILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQS 485 (715)
Q Consensus 406 ~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~ 485 (715)
..+...+......+++|+.|+|+++ .++.... ..+..+++|+.|+|++|....... +.. + ++|+.|+|++|.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---l~~-l-~~L~~L~Ls~N~- 91 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD---LES-L-STLRTLDLNNNY- 91 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE---CTT-C-TTCCEEECCSSE-
T ss_pred hhhHHHHHHhcccCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc---ccc-C-CCCCEEEecCCc-
Confidence 3344445555566779999999985 4443221 123678999999999975322111 222 2 789999999985
Q ss_pred chhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCC
Q 005073 486 LNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKL 565 (715)
Q Consensus 486 l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~l 565 (715)
+.. +...++|++|+++++. ++... ....++|+.|+|++| .++......+. .+++|+.|+|++| .+
T Consensus 92 l~~------l~~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l 156 (487)
T 3oja_A 92 VQE------LLVGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG-CRSRVQYLDLKLN-EI 156 (487)
T ss_dssp EEE------EEECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSS-CCCSGGGBCGG-GGSSEEEEECTTS-CC
T ss_pred CCC------CCCCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCC-CCCCCCchhhc-CCCCCCEEECCCC-CC
Confidence 332 3345899999998864 32211 112378999999998 46654322333 4788999999985 67
Q ss_pred ChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCH
Q 005073 566 TDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSD 645 (715)
Q Consensus 566 td~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd 645 (715)
+......+...+++|+.|+|++|.++... .+ ...++|+.|+|+++ .++... .-...+++|+.|+|++|. ++.
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~--~~l~~L~~L~Ls~N-~l~~~~--~~~~~l~~L~~L~Ls~N~-l~~ 228 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVK--GQ--VVFAKLKTLDLSSN-KLAFMG--PEFQSAAGVTWISLRNNK-LVL 228 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEE--CC--CCCTTCCEEECCSS-CCCEEC--GGGGGGTTCSEEECTTSC-CCE
T ss_pred CCcChHHHhhhCCcccEEecCCCcccccc--cc--ccCCCCCEEECCCC-CCCCCC--HhHcCCCCccEEEecCCc-Ccc
Confidence 66555555556889999999998876531 11 12478999999886 444211 113457889999999864 652
Q ss_pred HHHHHHHhcCCCccEEEEecCCC
Q 005073 646 EALGLIVDSCLSLRMLKLFGCSQ 668 (715)
Q Consensus 646 ~~l~~L~~~~~~L~~L~L~gC~~ 668 (715)
+......+++|+.|++++|+-
T Consensus 229 --lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 229 --IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp --ECTTCCCCTTCCEEECTTCCB
T ss_pred --cchhhccCCCCCEEEcCCCCC
Confidence 222234578899999988753
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=3.3e-11 Score=127.60 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHH-HHHHHhcCCCccEEEecCCCCCCh--HHHHHHHh
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFV-RGFVYACGHNMKELILTDCVKLTD--FSLKVIAE 549 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l-~~ll~~~~~~L~~L~Ls~c~~Ltd--~~L~~L~~ 549 (715)
++|++|+|++|..... ....+..+++|++|+++++.......+ ..+.....++|++|++++| .++. .....+..
T Consensus 149 ~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCC--CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccc--hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHh
Confidence 4455555555432111 112244555566666655432211111 1111112255566666555 3442 11222333
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
.+++|+.|+|+++ .++..........+++|+.|+|++|.++
T Consensus 226 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 226 ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC
Confidence 4555666666553 3333110011122355555555555443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=9.1e-11 Score=124.16 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=114.0
Q ss_pred CCceEEEecCCCCchhhhhHHH--hhcCCCCCEEeecCccccCH--HHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 473 SFIQELYINDCQSLNAMLILPA--LRKLKHLEVLSVAGIETVTD--EFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~--L~~l~~Le~L~Ls~~~~isd--~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
++|++|+|++|...... ... +..+++|++|+++++. ++. ..+..+.....++|++|+|++| .++......+.
T Consensus 95 ~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTA--PPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp SCCCEEEEEEEBCBSCC--CCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CCccEEEccCCcccchh--HHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 67777777777532211 111 2677788888887753 222 2233332222367888888887 35443322333
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHH--hcCCCccEEEccCCCCCHH-HHHHHHHhCCCCccEEEeCCCCCCCHHHHHHH
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLA--NGCQAIQTLKLCRNAFSDE-AIAAFLETAGEPLKELSLNNVRKVADNTALSL 625 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~--~~~~~Lk~L~Ls~~~isd~-~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L 625 (715)
.+++|+.|++++|.-.+..++..-. ..+++|+.|+|++|.+... .+...+....++|+.|+|+++. ++.......
T Consensus 171 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 171 -VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp -CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred -cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 4778888888886433223332222 5678888888888888742 1221121233788888888863 432110011
Q ss_pred HhcCCCccEEEecCCCCCCHHHHHHHHhc-CCCccEEEEecCCCCCcccccCCCCCCeeEEecCC
Q 005073 626 AKRSNKLVNLDLSWCRNLSDEALGLIVDS-CLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKM 689 (715)
Q Consensus 626 ~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~-~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~ 689 (715)
...+++|++|+|++|. ++ .+ ... .++|+.|+++++ +++..+. ...++.|+.+.+..
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~--~i---p~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LK--QV---PKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCCCTTCCEEECTTSC-CS--SC---CSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTT
T ss_pred hhhcCCCCEEECCCCc-cC--hh---hhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccC
Confidence 2346789999998864 65 11 111 168899999886 5665532 23455555555543
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=1.4e-10 Score=122.59 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++| .+++.. .+ ..+++|+.|++++| .++.... ...+++|+.|+|++|.+.+... + ...++
T Consensus 107 ~~L~~L~l~~n-~l~~~~--~l-~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l--~~l~~ 174 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVT--PL-AGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQVSDLTP--L--ANLSK 174 (308)
T ss_dssp TTCCEEECTTS-CCCCCG--GG-TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG--G--TTCTT
T ss_pred CCCCEEECCCC-CCCCch--hh-cCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCcCCCChh--h--cCCCC
Confidence 45555555555 233321 11 23555666666554 3332211 2345566666666655543211 1 12256
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
|+.|+|+++ .+++.. . ...+++|++|+|++|. +++.. . ...+++|+.|++++|+
T Consensus 175 L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 175 LTTLKADDN-KISDIS--P-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCEEECCSS-CCCCCG--G-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEE
T ss_pred CCEEECCCC-ccCcCh--h-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCe
Confidence 666666654 232211 1 2456777777777754 44322 2 2457777777777753
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=1.7e-10 Score=133.87 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++| .++. +....++|+.|++++| .++. +...+++|+.|+|++|.++.-. ...++
T Consensus 181 ~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N~L~~lp------~~l~~ 242 (622)
T 3g06_A 181 SGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGNRLTSLP------VLPSE 242 (622)
T ss_dssp TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSCCC------CCCTT
T ss_pred CCCcEEECCCC-CCCC-----CCCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCCccCcCC------CCCCc
Confidence 55666666655 2332 1122355666666553 3332 1122355666666665554311 22355
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
|+.|+|+++ .++. +...+++|+.|+|++|. |+ .+......+++|+.|+|++|+
T Consensus 243 L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N~-L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 243 LKELMVSGN-RLTS-----LPMLPSGLLSLSVYRNQ-LT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CcEEECCCC-CCCc-----CCcccccCcEEeCCCCC-CC--cCCHHHhhccccCEEEecCCC
Confidence 666666654 3331 11134556666666643 44 111122345666666666643
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.04 E-value=1.8e-11 Score=130.86 Aligned_cols=207 Identities=19% Similarity=0.188 Sum_probs=120.4
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
+.++.|+++++.. .. +...+..+++|++|+++++. +. .+...+. ..++|+.|+|++| .++.. ...+ ..++
T Consensus 81 ~~l~~L~L~~n~l-~~--lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~-~l~~L~~L~Ls~n-~l~~l-p~~l-~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQ--FPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQ-QFAGLETLTLARN-PLRAL-PASI-ASLN 150 (328)
T ss_dssp TTCCEEEEESSCC-SS--CCSCGGGGTTCSEEEEESSC-CC--CCCSCGG-GGTTCSEEEEESC-CCCCC-CGGG-GGCT
T ss_pred cceeEEEccCCCc-hh--cChhhhhCCCCCEEECCCCC-cc--chhHHHh-ccCCCCEEECCCC-ccccC-cHHH-hcCc
Confidence 4455555555432 11 22224445666666665542 22 0111111 1256677777666 34311 1112 2467
Q ss_pred CccEEEecCCCCCChHHHH-------HHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHH
Q 005073 553 RLCTLDLSNLYKLTDFGIG-------YLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSL 625 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~-------~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L 625 (715)
+|+.|+|++|..++..... .....+++|+.|+|++|.++. +...+. ..++|++|+|++|. ++. +..-
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~-~l~~L~~L~L~~N~-l~~--l~~~ 224 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIA-NLQNLKSLKIRNSP-LSA--LGPA 224 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGG-GCTTCCEEEEESSC-CCC--CCGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhc-CCCCCCEEEccCCC-CCc--Cchh
Confidence 7777777776443321100 002348999999999998762 211122 23799999999974 431 1122
Q ss_pred HhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCCCCCCCeee
Q 005073 626 AKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSPVLEHVK 697 (715)
Q Consensus 626 ~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp~L~~L~ 697 (715)
...+++|++|+|++|...+. +......+++|+.|+|++|..++........+++|+.+.|..|+.+..+.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred hccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 35689999999999874432 12223468999999999998777665554577888888888877666543
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.03 E-value=1.1e-12 Score=138.17 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHH-HHHHhhCCCCCEEeeccC
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF-KALVTSAPALRSINLSQC 456 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l-~~L~~~~p~L~~L~Ls~c 456 (715)
++|++|+|+++.. ... ....+..+++|+.|+|+++ .++..+. ...+..+++|+.|++++|
T Consensus 28 ~~l~~L~L~~n~l--~~i-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 28 SSATRLELESNKL--QSL-----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TTCCEEECCSSCC--CCC-----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CCCCEEECCCCcc--Ccc-----CHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 4566666665542 110 0112345566666666653 3331100 001123456666666554
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.01 E-value=4e-11 Score=126.72 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHh--cCCCCccEEEecCCCCCCH---
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSL--NSLPSLTTLSICGACRISD--- 435 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~--~~l~~L~~L~Ls~c~~lsd--- 435 (715)
..++.+.+.++. ++...+..+......++|++|+|+++.. .... +... ..+++|++|+|+++ .++.
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~-----~~~~~~~~~~~L~~L~Ls~n-~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI--TGTM-----PPLPLEATGLALSSLRLRNV-SWATGRS 134 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC--BSCC-----CCCSSSCCCBCCSSCEEESC-CCSSTTS
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe--ccch-----hhhhhhccCCCCCEEEeecc-cccchhh
Confidence 456778888886 6776666655443336788888888763 2110 1111 55677888888774 3332
Q ss_pred -HHHHHHHhhCCCCCEEeeccC
Q 005073 436 -VGFKALVTSAPALRSINLSQC 456 (715)
Q Consensus 436 -~~l~~L~~~~p~L~~L~Ls~c 456 (715)
.....+ ..+++|+.|+|++|
T Consensus 135 ~~~~~~~-~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 135 WLAELQQ-WLKPGLKVLSIAQA 155 (310)
T ss_dssp SHHHHHT-TBCSCCCEEEEECC
T ss_pred hhHHHHh-hhccCCCEEEeeCC
Confidence 111111 24667777777765
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.99 E-value=1.9e-10 Score=133.39 Aligned_cols=234 Identities=19% Similarity=0.159 Sum_probs=113.1
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++.. .. +...+++|+.|+|+++. ++. +. ..+++|++|+|++|..-.-..
T Consensus 61 ~~L~~L~L~~N~l--~~---------lp~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~l~~l~~----- 118 (622)
T 3g06_A 61 AHITTLVIPDNNL--TS---------LPALPPELRTLEVSGNQ-LTS--LP---VLPPGLLELSIFSNPLTHLPA----- 118 (622)
T ss_dssp TTCSEEEECSCCC--SC---------CCCCCTTCCEEEECSCC-CSC--CC---CCCTTCCEEEECSCCCCCCCC-----
T ss_pred CCCcEEEecCCCC--CC---------CCCcCCCCCEEEcCCCc-CCc--CC---CCCCCCCEEECcCCcCCCCCC-----
Confidence 4666666666542 21 11245566666666642 321 11 144666666666652111000
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
..++|+.|++++|.. ... . ..+++|++|+++++. ++. + ....++|+.|++++| .++.. .
T Consensus 119 --~l~~L~~L~L~~N~l-~~l--p---~~l~~L~~L~Ls~N~-l~~--l----~~~~~~L~~L~L~~N-~l~~l-----~ 177 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQL-TSL--P---VLPPGLQELSVSDNQ-LAS--L----PALPSELCKLWAYNN-QLTSL-----P 177 (622)
T ss_dssp --CCTTCCEEECCSSCC-SCC--C---CCCTTCCEEECCSSC-CSC--C----CCCCTTCCEEECCSS-CCSCC-----C
T ss_pred --CCCCcCEEECCCCCC-CcC--C---CCCCCCCEEECcCCc-CCC--c----CCccCCCCEEECCCC-CCCCC-----c
Confidence 125566666666642 211 0 123566666666542 221 0 012256666666665 34331 1
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..+++|+.|++++| .++. +....++|+.|++++|.++.-. ...++|+.|+|+++ .++. +...
T Consensus 178 ~~~~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N-~L~~-----lp~~ 239 (622)
T 3g06_A 178 MLPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGN-RLTS-----LPVL 239 (622)
T ss_dssp CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSS-CCSC-----CCCC
T ss_pred ccCCCCcEEECCCC-CCCC-----CCCccchhhEEECcCCcccccC------CCCCCCCEEEccCC-ccCc-----CCCC
Confidence 34566666666664 3432 1122456666666666554210 11256666666665 3332 1134
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEecCCC
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMS 690 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~c 690 (715)
+++|+.|+|++|. |+. +...+++|+.|+|++| +++..+.....+++|+.+.+..+
T Consensus 240 l~~L~~L~Ls~N~-L~~-----lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 240 PSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCcCcEEECCCCC-CCc-----CCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 5666777766653 431 1114566666766665 34433322224455555555544
No 73
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.4e-09 Score=117.84 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=5.3
Q ss_pred CCeeEEEEc
Q 005073 389 KNLTVLQLD 397 (715)
Q Consensus 389 p~L~~L~L~ 397 (715)
++|+.|.|.
T Consensus 139 ~~L~~L~l~ 147 (362)
T 2ra8_A 139 AHFEGLFWG 147 (362)
T ss_dssp TTCSEEEEC
T ss_pred chhhheeec
Confidence 566666654
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.98 E-value=9.9e-12 Score=137.96 Aligned_cols=227 Identities=19% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|+.|+|+++.. ... ....+..+++|+.|+|+++ .++...... +..+++|+.|+|++|. ++......+.
T Consensus 64 ~~l~~L~L~~n~i--~~~-----~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QII-----KVNSFKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDNR-LTTIPNGAFV 133 (440)
T ss_dssp TTCSEEECCSCCC--CEE-----CTTTTSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred CCCcEEEccCCcC--Cee-----CHHHhhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCCc-CCeeCHhHhh
Confidence 6788899888763 221 1123467888999999884 444322222 3567889999998863 2211111111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|+.|+|++|..... ....+..+++|+.|++.++..+....... + ...++|+.|+|++| .++... .+
T Consensus 134 ~-l-~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~-~~l~~L~~L~L~~n-~l~~~~--~~- 203 (440)
T 3zyj_A 134 Y-L-SKLKELWLRNNPIESI--PSYAFNRIPSLRRLDLGELKRLSYISEGA-F-EGLSNLRYLNLAMC-NLREIP--NL- 203 (440)
T ss_dssp S-C-SSCCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTT-T-TTCSSCCEEECTTS-CCSSCC--CC-
T ss_pred c-c-ccCceeeCCCCccccc--CHHHhhhCcccCEeCCCCCCCcceeCcch-h-hcccccCeecCCCC-cCcccc--cc-
Confidence 1 1 6788888888863221 12246778888888888754433211100 1 12378888888887 354321 12
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..+++|+.|+|++| .++..... .+..+++|+.|+|++|.+.......+. ..++|+.|+|+++ .++... ......
T Consensus 204 ~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~-~~~~~~ 277 (440)
T 3zyj_A 204 TPLIKLDELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFD--NLQSLVEINLAHN-NLTLLP-HDLFTP 277 (440)
T ss_dssp TTCSSCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSST--TCTTCCEEECTTS-CCCCCC-TTTTSS
T ss_pred CCCcccCEEECCCC-ccCccChh-hhccCccCCEEECCCCceeEEChhhhc--CCCCCCEEECCCC-CCCccC-hhHhcc
Confidence 24678888888885 55543222 233578888888888876543222221 2367888888875 343211 112245
Q ss_pred CCCccEEEecCCC
Q 005073 629 SNKLVNLDLSWCR 641 (715)
Q Consensus 629 ~~~L~~LdLs~C~ 641 (715)
+++|+.|+|++++
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 6788888888754
No 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.97 E-value=2.8e-11 Score=134.79 Aligned_cols=228 Identities=18% Similarity=0.107 Sum_probs=137.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
.++|+.|+|+++ .++...... +..+++|+.|+|+++. +.......+.. + ++|+.|+|++|.. ... ....+..+
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-l-~~L~~L~L~~n~l-~~~-~~~~~~~l 146 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRNS-IRQIEVGAFNG-L-ASLNTLELFDNWL-TVI-PSGAFEYL 146 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTTTT-C-TTCCEEECCSSCC-SBC-CTTTSSSC
T ss_pred CCCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCCc-cCCcChhhccC-c-ccCCEEECCCCcC-Ccc-Chhhhccc
Confidence 358999999984 444321111 3567999999999873 33221112222 2 7899999998863 221 12336778
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|++|+++++. +..... ..+ ...++|+.|+|++|..++......+. .+++|+.|+|++| .++.. .. ...++
T Consensus 147 ~~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPS-YAF-NRVPSLMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMC-NIKDM--PN-LTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEECT-TTT-TTCTTCCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTS-CCSSC--CC-CTTCT
T ss_pred CCCCEEECCCCC-cceeCH-hHH-hcCCcccEEeCCCCCCccccChhhcc-CCCCCCEEECCCC-ccccc--cc-ccccc
Confidence 899999998763 321100 011 12378999999887666543322222 4788999999886 45432 12 23578
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCc
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSL 658 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L 658 (715)
+|+.|+|++|.+.......+. ..++|+.|+|+++ .++.... .....+++|+.|+|++|. ++.... .++..+++|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L 292 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNS-QVSLIER-NAFDGLASLVELNLAHNN-LSSLPH-DLFTPLRYL 292 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCT-TSSTTCTTC
T ss_pred cccEEECcCCcCcccCccccc--CccCCCEEEeCCC-cCceECH-HHhcCCCCCCEEECCCCc-CCccCh-HHhccccCC
Confidence 899999998877653222221 2378888888886 3432111 112457888888888864 553222 223457888
Q ss_pred cEEEEecCC
Q 005073 659 RMLKLFGCS 667 (715)
Q Consensus 659 ~~L~L~gC~ 667 (715)
+.|+|++++
T Consensus 293 ~~L~L~~Np 301 (452)
T 3zyi_A 293 VELHLHHNP 301 (452)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 888888754
No 76
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=7e-12 Score=131.88 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=137.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHH--HHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTS--VDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~--l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
.++|+.|+|+++ .++.... ..+..+++|+.|+|+++. ++..+ ...+.. + ++|+.|+|++|.... +...+.
T Consensus 27 ~~~l~~L~L~~n-~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~-~-~~L~~L~Ls~n~i~~---l~~~~~ 98 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFG-T-TSLKYLDLSFNGVIT---MSSNFL 98 (306)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHHS-C-SCCCEEECCSCSEEE---EEEEEE
T ss_pred CCCCCEEECCCC-ccCccCH-hHhhccccCCEEECCCCc-cCcccCccccccc-c-cccCEEECCCCcccc---ChhhcC
Confidence 468999999985 4443211 224678999999999964 33211 111222 2 889999999986332 223367
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
.+++|++|+++++......... .+ ...++|+.|++++|. ++......+ ..+++|+.|++++| .++...+......
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~-~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 173 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFS-VF-LSLRNLIYLDISHTH-TRVAFNGIF-NGLSSLEVLKMAGN-SFQENFLPDIFTE 173 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTT-TT-TTCTTCCEEECTTSC-CEECSTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTT
T ss_pred CCCCCCEEECCCCcccccccch-hh-hhccCCCEEECCCCc-CCccchhhc-ccCcCCCEEECCCC-ccccccchhHHhh
Confidence 7899999999876322111101 11 123789999999883 443222222 24788999999885 4443222333455
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcC-
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSC- 655 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~- 655 (715)
+++|+.|+|++|.+.......+. ..++|+.|+|+++. ++..... ....+++|+.|+|++|. ++......+. .+
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~~~ 247 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQELQ-HFP 247 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSSSCC-CCC
T ss_pred CcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC-CcccCHHHHH-hhh
Confidence 78899999998877653222121 23678888888763 3321111 12457788888888864 5433333332 34
Q ss_pred CCccEEEEecCC
Q 005073 656 LSLRMLKLFGCS 667 (715)
Q Consensus 656 ~~L~~L~L~gC~ 667 (715)
++|+.|+|++++
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 478888887764
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.96 E-value=1.2e-11 Score=137.89 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=148.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++. +... ....+..+++|+.|+|+++ .++..... .+..+++|+.|+|++|. ++......+.
T Consensus 75 ~~l~~L~L~~n~--i~~~-----~~~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENN--IQMI-----QADTFRHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDNW-LTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSC--CCEE-----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred CCccEEECcCCc--CceE-----CHHHcCCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCCc-CCccChhhhc
Confidence 689999999876 3321 1233578999999999985 45432212 23668999999999974 3221111111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
.+ ++|+.|+|++|... .. ....+..+++|+.|+++++..+..-.... + ...++|+.|+|++| .+++.. .+
T Consensus 145 -~l-~~L~~L~L~~N~l~-~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~-~~l~~L~~L~L~~n-~l~~~~--~~- 214 (452)
T 3zyi_A 145 -YL-SKLRELWLRNNPIE-SI-PSYAFNRVPSLMRLDLGELKKLEYISEGA-F-EGLFNLKYLNLGMC-NIKDMP--NL- 214 (452)
T ss_dssp -SC-TTCCEEECCSCCCC-EE-CTTTTTTCTTCCEEECCCCTTCCEECTTT-T-TTCTTCCEEECTTS-CCSSCC--CC-
T ss_pred -cc-CCCCEEECCCCCcc-ee-CHhHHhcCCcccEEeCCCCCCccccChhh-c-cCCCCCCEEECCCC-cccccc--cc-
Confidence 12 78999999999643 21 12347789999999998865543211111 1 12389999999998 465431 22
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..+++|+.|+|++| .++..... .+..+++|+.|+|++|.+.......+. ..++|+.|+|+++ .++... ......
T Consensus 215 ~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~-~~~~~~ 288 (452)
T 3zyi_A 215 TPLVGLEELEMSGN-HFPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAHN-NLSSLP-HDLFTP 288 (452)
T ss_dssp TTCTTCCEEECTTS-CCSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCSCCC-TTSSTT
T ss_pred cccccccEEECcCC-cCcccCcc-cccCccCCCEEEeCCCcCceECHHHhc--CCCCCCEEECCCC-cCCccC-hHHhcc
Confidence 24789999999996 66543222 234689999999999987653222221 2379999999987 444211 112245
Q ss_pred CCCccEEEecCCC
Q 005073 629 SNKLVNLDLSWCR 641 (715)
Q Consensus 629 ~~~L~~LdLs~C~ 641 (715)
+++|+.|+|++++
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 7999999999965
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.96 E-value=2e-10 Score=121.28 Aligned_cols=136 Identities=24% Similarity=0.283 Sum_probs=64.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHH--HhcCCCccEEEccCCCCCHH--HHHHHHHh
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYL--ANGCQAIQTLKLCRNAFSDE--AIAAFLET 601 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l--~~~~~~Lk~L~Ls~~~isd~--~l~~Ll~~ 601 (715)
++|+.|+|++|. ++......+. .+++|++|+|++|.-.++.++... ...+++|+.|+|++|.++.. ....++..
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred cCCCEEEeeCCC-cchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 566666666652 3322211111 356666666666432222222211 13456666666666666531 11112121
Q ss_pred CCCCccEEEeCCCCCCCHHHHHHHHh--cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCc
Q 005073 602 AGEPLKELSLNNVRKVADNTALSLAK--RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITN 671 (715)
Q Consensus 602 ~~~~L~~L~L~~c~~I~d~~l~~L~~--~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~ 671 (715)
.++|++|+|+++. +++.....+.. .+++|++|+|++|. ++. +.. .-+++|+.|+|++| +++.
T Consensus 223 -l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~~~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 223 -GVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--GLPAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp -TCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--CCCSCCSCEECCSC-CCCS
T ss_pred -CCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--hhcCCCCEEECCCC-cCCC
Confidence 2566666666643 33210000111 12577777777754 541 111 11367788888775 3554
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.96 E-value=2.6e-11 Score=134.56 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=140.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
.++|+.|+|+++ .++...... +..+++|+.|+|++|. +.......+.. + ++|+.|+|++|.. ... ....+..+
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-l-~~L~~L~L~~n~l-~~~-~~~~~~~l 135 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRNH-IRTIEIGAFNG-L-ANLNTLELFDNRL-TTI-PNGAFVYL 135 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSSC-CCEECGGGGTT-C-SSCCEEECCSSCC-SSC-CTTTSCSC
T ss_pred CCCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCCc-CCccChhhccC-C-ccCCEEECCCCcC-Cee-CHhHhhcc
Confidence 368999999984 444322222 3568999999999973 33221122222 2 7899999999853 221 12246788
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|++|+++++. +...... .+ ...++|+.|+|++|..++......+. .+++|+.|+|++| .++.. .. ...++
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~-~~-~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~ 207 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSY-AF-NRIPSLRRLDLGELKRLSYISEGAFE-GLSNLRYLNLAMC-NLREI--PN-LTPLI 207 (440)
T ss_dssp SSCCEEECCSCC-CCEECTT-TT-TTCTTCCEEECCCCTTCCEECTTTTT-TCSSCCEEECTTS-CCSSC--CC-CTTCS
T ss_pred ccCceeeCCCCc-ccccCHH-Hh-hhCcccCEeCCCCCCCcceeCcchhh-cccccCeecCCCC-cCccc--cc-cCCCc
Confidence 999999998763 3211000 11 12378999999987666543322222 4788999999986 55432 12 34578
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCc
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSL 658 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L 658 (715)
+|+.|+|++|.+.......+. ..++|+.|+|+++ .++..... ....+++|+.|+|++|. ++..... ++..+++|
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L 281 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQS-QIQVIERN-AFDNLQSLVEINLAHNN-LTLLPHD-LFTPLHHL 281 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTC-CCCEECTT-SSTTCTTCCEEECTTSC-CCCCCTT-TTSSCTTC
T ss_pred ccCEEECCCCccCccChhhhc--cCccCCEEECCCC-ceeEEChh-hhcCCCCCCEEECCCCC-CCccChh-HhccccCC
Confidence 899999999877653222221 2378999999886 44422111 12357889999999864 6532222 23467889
Q ss_pred cEEEEecCC
Q 005073 659 RMLKLFGCS 667 (715)
Q Consensus 659 ~~L~L~gC~ 667 (715)
+.|+|++++
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 999888654
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.93 E-value=4.2e-11 Score=124.70 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=111.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 419 l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
.++|++|+|+++ .++..... .+..+++|+.|+|+++. ++......+.. + ++|+.|+|++|..+... ....+..+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~l~~n~~l~~~-~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSNV-LARIDAAAFTG-L-ALLEQLDLSDNAQLRSV-DPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECTTTTTT-C-TTCCEEECCSCTTCCCC-CTTTTTTC
T ss_pred CCCceEEEeeCC-cCCccCHH-HcccCCCCCEEECCCCc-cceeCHhhcCC-c-cCCCEEeCCCCCCcccc-CHHHhcCC
Confidence 468899999884 44432211 13567888888888863 33211112222 2 67888888887533332 12346677
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|++|+++++. +.... ...+ ...++|++|++++| .++......+ ..+++|+.|+|++| .++...... ...++
T Consensus 105 ~~L~~L~l~~n~-l~~~~-~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCG-LQELG-PGLF-RGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGN-RISSVPERA-FRGLH 177 (285)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTT-TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCEECTTT-TTTCT
T ss_pred cCCCEEECCCCc-CCEEC-HhHh-hCCcCCCEEECCCC-cccccCHhHh-ccCCCccEEECCCC-cccccCHHH-hcCcc
Confidence 888888887753 22110 0111 12367888888877 3443222222 24677888888775 454322211 23467
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
+|+.|+|++|.+.......+. ..++|+.|+|+++ .++.... .....+++|++|+|++++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHcc--CcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence 777777777766543211111 1256777777665 3332111 122346677777777654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.92 E-value=1.1e-09 Score=115.89 Aligned_cols=188 Identities=21% Similarity=0.248 Sum_probs=86.6
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|++.+|.. .+. . ....+++|+.|+|++| .+++... +..+++|+.|++++|. +... ..+.
T Consensus 41 ~~L~~L~l~~~~i--~~l------~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGV--TTI------E-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV--SAIA 104 (308)
T ss_dssp HTCCEEECTTSCC--CCC------T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC--GGGT
T ss_pred CCcCEEEeeCCCc--cCc------h-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc--hhhc
Confidence 5677777776652 221 1 1245666777777664 3332111 3455666666666653 2211 1111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|+.|++++|.... . ..+..+++ |+.|++++| .+++... .
T Consensus 105 ~-l-~~L~~L~l~~n~l~~-~---~~l~~l~~---------------------------L~~L~l~~n-~l~~~~~---l 147 (308)
T 1h6u_A 105 G-L-QSIKTLDLTSTQITD-V---TPLAGLSN---------------------------LQVLYLDLN-QITNISP---L 147 (308)
T ss_dssp T-C-TTCCEEECTTSCCCC-C---GGGTTCTT---------------------------CCEEECCSS-CCCCCGG---G
T ss_pred C-C-CCCCEEECCCCCCCC-c---hhhcCCCC---------------------------CCEEECCCC-ccCcCcc---c
Confidence 1 1 445555555553211 1 11344444 555555444 2322111 1
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..+++|+.|++++| .+++... ...+++|+.|+|++|.+.+... + ...++|++|+|++| .+++.. . ...
T Consensus 148 ~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~L~~N-~l~~~~--~-l~~ 215 (308)
T 1h6u_A 148 AGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDNKISDISP--L--ASLPNLIEVHLKNN-QISDVS--P-LAN 215 (308)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECTTS-CCCBCG--G-GTT
T ss_pred cCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCCccCcChh--h--cCCCCCCEEEccCC-ccCccc--c-ccC
Confidence 23455555555554 3333111 2335555666665555443211 1 12256666666664 233211 1 245
Q ss_pred CCCccEEEecCCC
Q 005073 629 SNKLVNLDLSWCR 641 (715)
Q Consensus 629 ~~~L~~LdLs~C~ 641 (715)
+++|+.|++++|.
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 6778888877754
No 82
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.90 E-value=1e-10 Score=121.69 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=119.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++. +... ....+..+++|++|+|+++ .++..... .+..+++|+.|+++++..+.......+.
T Consensus 32 ~~l~~L~l~~n~--i~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHV-----PAASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSC--CCEE-----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCc--CCcc-----CHHHcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 578888887765 2221 1123466778888888774 44432111 1355688888888876433322111122
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|+.|++++|..... ....+..+++|++|+++++. +..... ..+ ...++|+.|+|++| .++......+.
T Consensus 103 ~-l-~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~ 174 (285)
T 1ozn_A 103 G-L-GRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNA-LQALPD-DTF-RDLGNLTHLFLHGN-RISSVPERAFR 174 (285)
T ss_dssp T-C-TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred C-C-cCCCEEECCCCcCCEE--CHhHhhCCcCCCEEECCCCc-ccccCH-hHh-ccCCCccEEECCCC-cccccCHHHhc
Confidence 1 1 6788888888753221 12346678888888887753 221100 001 12378888888887 45543322232
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCC
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRK 616 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~ 616 (715)
.+++|+.|+|++| .++......+ ..+++|+.|+|++|.+.......+. ..++|+.|+|++++-
T Consensus 175 -~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 175 -GLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPW 237 (285)
T ss_dssp -TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCE
T ss_pred -CccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCc
Confidence 4788888888885 5554332222 3478888888888877653322221 237888888888653
No 83
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=7.6e-09 Score=112.13 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=52.3
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHh-CCCCccEEEeCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCHHHHHHHH
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLET-AGEPLKELSLNNVRKVADNTALSLA---KRSNKLVNLDLSWCRNLSDEALGLIV 652 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~-~~~~L~~L~L~~c~~I~d~~l~~L~---~~~~~L~~LdLs~C~~Ltd~~l~~L~ 652 (715)
+|+|+.|+|.+|.+.+.+...+... ..++|+.|+|+. +.+++.++..++ ..+++|+.|+|++|. |++.++..|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHH
Confidence 5666666666666655544444331 135677777754 356666655554 346788888888764 8888888777
Q ss_pred hcCCCccEEEEec
Q 005073 653 DSCLSLRMLKLFG 665 (715)
Q Consensus 653 ~~~~~L~~L~L~g 665 (715)
+.+ .-.+++++
T Consensus 329 ~al--g~~~~~~~ 339 (362)
T 2ra8_A 329 KSL--PMKIDVSD 339 (362)
T ss_dssp HHC--CSEEECCS
T ss_pred HHc--CCEEEecC
Confidence 644 34466655
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.88 E-value=1.5e-09 Score=121.17 Aligned_cols=241 Identities=17% Similarity=0.180 Sum_probs=143.1
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.++. ++. +.. +..+ ++|++|+++++.. .. +....++|++|+++++ .++. +..
T Consensus 131 ~~L~~L~L~~n~-l~~--lp~-~~~l--~~L~~L~l~~N~l--~~---------lp~~~~~L~~L~L~~n-~l~~--l~~ 190 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK--LPE-LQNS--SFLKIIDVDNNSL--KK---------LPDLPPSLEFIAAGNN-QLEE--LPE 190 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTC--TTCCEEECCSSCC--SC---------CCCCCTTCCEEECCSS-CCSS--CCC
T ss_pred CCCCEEECcCCC-CCC--Ccc-cCCC--CCCCEEECCCCcC--cc---------cCCCcccccEEECcCC-cCCc--Ccc
Confidence 356777777664 322 111 2223 6777777777652 21 1123357788888774 3332 112
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+..+++|+.|++++|..-. + .. .+++|+.|++++|... . +. .+..+++|++|+++++. +.. +
T Consensus 191 -~~~l~~L~~L~l~~N~l~~---l---~~-~~~~L~~L~l~~n~l~-~--lp-~~~~l~~L~~L~l~~N~-l~~--l--- 252 (454)
T 1jl5_A 191 -LQNLPFLTAIYADNNSLKK---L---PD-LPLSLESIVAGNNILE-E--LP-ELQNLPFLTTIYADNNL-LKT--L--- 252 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSS---C---CC-CCTTCCEEECCSSCCS-S--CC-CCTTCTTCCEEECCSSC-CSS--C---
T ss_pred -ccCCCCCCEEECCCCcCCc---C---CC-CcCcccEEECcCCcCC-c--cc-ccCCCCCCCEEECCCCc-CCc--c---
Confidence 3567788888888764211 0 01 1257888888888532 2 11 36678888888888753 221 1
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHH
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLE 600 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~ 600 (715)
....++|+.|++++|. ++. +...+++|+.|++++| .++.. ....++|+.|++++|.+..- .
T Consensus 253 -~~~~~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N-~l~~l-----~~~~~~L~~L~l~~N~l~~i------~ 313 (454)
T 1jl5_A 253 -PDLPPSLEALNVRDNY-LTD-----LPELPQSLTFLDVSEN-IFSGL-----SELPPNLYYLNASSNEIRSL------C 313 (454)
T ss_dssp -CSCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSEE-----SCCCTTCCEEECCSSCCSEE------C
T ss_pred -cccccccCEEECCCCc-ccc-----cCcccCcCCEEECcCC-ccCcc-----cCcCCcCCEEECcCCcCCcc------c
Confidence 1123688888888873 443 2233578888888885 45431 11236788888888877641 1
Q ss_pred hCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCc
Q 005073 601 TAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITN 671 (715)
Q Consensus 601 ~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~ 671 (715)
....+|+.|+++++ .++. +...+++|+.|++++|. ++. +.. .+++|+.|++++|. ++.
T Consensus 314 ~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 314 DLPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFNH-LAE--VPE---LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSS
T ss_pred CCcCcCCEEECCCC-cccc-----ccccCCcCCEEECCCCc-ccc--ccc---hhhhccEEECCCCC-CCc
Confidence 12258888988886 3432 22346889999998864 542 222 46789999998864 444
No 85
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=4.6e-08 Score=95.56 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc---CCCccEEEecCCCCCChHHHHHHHh---cCCCccEEEccCCC
Q 005073 516 FVRGFVYACGHNMKELILTDCVKLTDFSLKVIAET---CPRLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNA 589 (715)
Q Consensus 516 ~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~---~p~L~~L~Ls~c~~ltd~gl~~l~~---~~~~Lk~L~Ls~~~ 589 (715)
.+..++.. .++|++|+|++|..+++.++..++.. +++|++|+|++| .+++.|...++. ..++|++|+|++|.
T Consensus 27 ~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 34444433 37888888888755888777666543 577888888885 688877666543 34678888888888
Q ss_pred CCHHHHHHHHHhC--CCCccEEEe--CCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCHHH
Q 005073 590 FSDEAIAAFLETA--GEPLKELSL--NNVRKVADNTALSLA---KRSNKLVNLDLSWCRNLSDEA 647 (715)
Q Consensus 590 isd~~l~~Ll~~~--~~~L~~L~L--~~c~~I~d~~l~~L~---~~~~~L~~LdLs~C~~Ltd~~ 647 (715)
|++.+..++.... .++|++|+| ++ +.|++.++..++ ..+++|++|+|++|. +++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 8888777665432 356888888 44 467777765554 345778888887754 66554
No 86
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=4.6e-08 Score=95.60 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHhhcCCCCCEEeecCccccCHHHHHHHHHh--cCCCccEEEecCCCCCChHHHHHHHhc---CCCccEEEecCCCCCCh
Q 005073 493 PALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CGHNMKELILTDCVKLTDFSLKVIAET---CPRLCTLDLSNLYKLTD 567 (715)
Q Consensus 493 ~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~--~~~~L~~L~Ls~c~~Ltd~~L~~L~~~---~p~L~~L~Ls~c~~ltd 567 (715)
..+...++|++|+|+++..+++.++..+... ..++|++|+|++| .|++.+...++.. .++|++|+|++| .+++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 3344445555555544323444444333221 1234555555554 3444444333321 244555555543 4455
Q ss_pred HHHHHHHh---cCCCccEEEc--cCCCCCHHHHHHHHHh--CCCCccEEEeCCC
Q 005073 568 FGIGYLAN---GCQAIQTLKL--CRNAFSDEAIAAFLET--AGEPLKELSLNNV 614 (715)
Q Consensus 568 ~gl~~l~~---~~~~Lk~L~L--s~~~isd~~l~~Ll~~--~~~~L~~L~L~~c 614 (715)
.|...++. .+++|++|+| ++|.+++.+...+... ..++|++|+|+++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 44444432 2234555555 4455555443333221 1244555555443
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=1.1e-09 Score=122.51 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|++.++. ++. +.... ++|++|+++++.. .. +....++|++|+++++ .++. +..
T Consensus 91 ~~L~~L~l~~n~-l~~-----lp~~~--~~L~~L~l~~n~l--~~---------l~~~~~~L~~L~L~~n-~l~~--lp~ 148 (454)
T 1jl5_A 91 PHLESLVASCNS-LTE-----LPELP--QSLKSLLVDNNNL--KA---------LSDLPPLLEYLGVSNN-QLEK--LPE 148 (454)
T ss_dssp TTCSEEECCSSC-CSS-----CCCCC--TTCCEEECCSSCC--SC---------CCSCCTTCCEEECCSS-CCSS--CCC
T ss_pred CCCCEEEccCCc-CCc-----ccccc--CCCcEEECCCCcc--Cc---------ccCCCCCCCEEECcCC-CCCC--Ccc
Confidence 467788887665 322 11122 6788888877652 22 1112258888888875 3433 222
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHH
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~l 520 (715)
+..+++|+.|++++|. ++. +. . ...+|+.|++++|.... . +.+..+++|++|+++++. +.. +
T Consensus 149 -~~~l~~L~~L~l~~N~-l~~--lp---~-~~~~L~~L~L~~n~l~~-l---~~~~~l~~L~~L~l~~N~-l~~--l--- 210 (454)
T 1jl5_A 149 -LQNSSFLKIIDVDNNS-LKK--LP---D-LPPSLEFIAAGNNQLEE-L---PELQNLPFLTAIYADNNS-LKK--L--- 210 (454)
T ss_dssp -CTTCTTCCEEECCSSC-CSC--CC---C-CCTTCCEEECCSSCCSS-C---CCCTTCTTCCEEECCSSC-CSS--C---
T ss_pred -cCCCCCCCEEECCCCc-Ccc--cC---C-CcccccEEECcCCcCCc-C---ccccCCCCCCEEECCCCc-CCc--C---
Confidence 4667888888888863 221 10 1 12578888888875322 1 136777888888887653 221 1
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 521 l~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
....++|+.|++++| .++.. ..+. .+++|+.|++++| .++. +...+++|+.|++++|.+.
T Consensus 211 -~~~~~~L~~L~l~~n-~l~~l--p~~~-~l~~L~~L~l~~N-~l~~-----l~~~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 211 -PDLPLSLESIVAGNN-ILEEL--PELQ-NLPFLTTIYADNN-LLKT-----LPDLPPSLEALNVRDNYLT 270 (454)
T ss_dssp -CCCCTTCCEEECCSS-CCSSC--CCCT-TCTTCCEEECCSS-CCSS-----CCSCCTTCCEEECCSSCCS
T ss_pred -CCCcCcccEEECcCC-cCCcc--cccC-CCCCCCEEECCCC-cCCc-----ccccccccCEEECCCCccc
Confidence 111246777777776 34421 1222 4667777777764 3332 1112355666666665543
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.80 E-value=1.3e-09 Score=107.16 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCC
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSN 630 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~ 630 (715)
+++|++|++++| .+++.....+. .+++|+.|++++|.+++.....+. ..++|++|+|++|..+++.. ....++
T Consensus 87 l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~i~~~~---~l~~l~ 159 (197)
T 4ezg_A 87 LSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIM---PLKTLP 159 (197)
T ss_dssp CTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTBCCCCG---GGGGCS
T ss_pred CCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCCccccH---hhcCCC
Confidence 455555555553 33332222222 345555555555555543333221 12455555555554343321 123466
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 005073 631 KLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 631 ~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC 666 (715)
+|++|++++|. +++.. . ...+++|+.|+++++
T Consensus 160 ~L~~L~l~~n~-i~~~~--~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 160 ELKSLNIQFDG-VHDYR--G-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECTTBC-CCCCT--T-GGGCSSCCEEEECBC
T ss_pred CCCEEECCCCC-CcChH--H-hccCCCCCEEEeeCc
Confidence 67777776654 44321 2 235667777777664
No 89
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.75 E-value=5.4e-11 Score=126.11 Aligned_cols=249 Identities=14% Similarity=0.124 Sum_probs=152.9
Q ss_pred CCccEEEecCCCCCCH-HHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 420 PSLTTLSICGACRISD-VGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd-~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
.+++.|+|+++. ++. ..+...+..+++|+.|+|+++..+.......+.. + ++|+.|+|++|..... +...+..+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l-~~L~~L~Ls~n~l~~~--~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-L-TQLHYLYITHTNVSGA--IPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-C-TTCSEEEEEEECCEEE--CCGGGGGC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-C-CCCCEEECcCCeeCCc--CCHHHhCC
Confidence 589999999854 432 0122234678999999999533332111112222 2 7899999999864322 23457889
Q ss_pred CCCCEEeecCcccc--CHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC-CccEEEecCCCCCChHHHHHHHh
Q 005073 499 KHLEVLSVAGIETV--TDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP-RLCTLDLSNLYKLTDFGIGYLAN 575 (715)
Q Consensus 499 ~~Le~L~Ls~~~~i--sd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p-~L~~L~Ls~c~~ltd~gl~~l~~ 575 (715)
++|++|+++++... -...+ . ..++|++|++++| .++......+.. ++ +|+.|++++| .++......+ .
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~L~~N-~l~~~~p~~l~~-l~~~L~~L~L~~N-~l~~~~~~~~-~ 195 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSI----S-SLPNLVGITFDGN-RISGAIPDSYGS-FSKLFTSMTISRN-RLTGKIPPTF-A 195 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGG----G-GCTTCCEEECCSS-CCEEECCGGGGC-CCTTCCEEECCSS-EEEEECCGGG-G
T ss_pred CCCCEEeCCCCccCCcCChHH----h-cCCCCCeEECcCC-cccCcCCHHHhh-hhhcCcEEECcCC-eeeccCChHH-h
Confidence 99999999886422 11112 2 2389999999998 465333333443 55 8999999986 4442211222 2
Q ss_pred cCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcC
Q 005073 576 GCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSC 655 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~ 655 (715)
.+. |+.|+|++|.+.......+ ...++|+.|+|+++. ++.. +.. ...+++|++|+|++|. ++......+ ..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQGL-TQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEECCCGGG-GGC
T ss_pred CCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCc-eeee-cCc-ccccCCCCEEECcCCc-ccCcCChHH-hcC
Confidence 344 9999999987653211111 123799999999874 3311 111 3457899999999975 653322333 468
Q ss_pred CCccEEEEecCCCCCcccccCCCCCCeeEEecCCCC
Q 005073 656 LSLRMLKLFGCSQITNAFLDGHSNPDVQIIGLKMSP 691 (715)
Q Consensus 656 ~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L~~cp 691 (715)
++|+.|+|++| .++........++.|+.+.+...|
T Consensus 268 ~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 KFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCCCEEECcCC-cccccCCCCccccccChHHhcCCC
Confidence 99999999997 455443333344455555554444
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.73 E-value=2.4e-10 Score=131.40 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCccEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHH
Q 005073 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (715)
Q Consensus 361 ~~L~~L~L~~c~~L~~~~l~~l~~~c~~p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~ 440 (715)
+.++.|+|.+|. ++.-. ...+..+ ++|++|+|+++. +..- ....+.++++|++|+|+++ .++...- .
T Consensus 76 ~~L~~L~Ls~N~-i~~i~-~~~f~~L--~~L~~L~Ls~N~--l~~l-----~~~~f~~L~~L~~L~Ls~N-~l~~l~~-~ 142 (635)
T 4g8a_A 76 PELQVLDLSRCE-IQTIE-DGAYQSL--SHLSTLILTGNP--IQSL-----ALGAFSGLSSLQKLVAVET-NLASLEN-F 142 (635)
T ss_dssp TTCCEEECTTCC-CCEEC-TTTTTTC--TTCCEEECTTCC--CCEE-----CGGGGTTCTTCCEEECTTS-CCCCSTT-C
T ss_pred CCCCEEECCCCc-CCCcC-hhHhcCC--CCCCEEEccCCc--CCCC-----CHHHhcCCCCCCEEECCCC-cCCCCCh-h
Confidence 567888888775 32100 0123333 788888888775 2221 1123467788888888875 3332110 1
Q ss_pred HHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCC
Q 005073 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ 484 (715)
Q Consensus 441 L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~ 484 (715)
.+..+++|+.|+++++..-.. .+......+ ++|++|++++|.
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l-~~L~~L~L~~N~ 184 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNL-TNLEHLDLSSNK 184 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCC-CCCGGGGGC-TTCCEEECCSSC
T ss_pred hhhcCcccCeeccccCccccC-CCchhhccc-hhhhhhcccCcc
Confidence 135578888888888632110 010111112 678888888875
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.72 E-value=7.7e-09 Score=101.68 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=39.0
Q ss_pred hhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLA 574 (715)
Q Consensus 495 L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~ 574 (715)
+..+++|++|+++++ .+++.....+ . ..++|+.|++++|..+++.. .+ ..+++|+.|++++| .+++.. ..
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~~~~~l-~-~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n-~i~~~~---~l 177 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDSILTKI-N-TLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFD-GVHDYR---GI 177 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGGGHHHH-T-TCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTB-CCCCCT---TG
T ss_pred hcCCCCCCEEEecCC-ccCcHhHHHH-h-hCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCC-CCcChH---Hh
Confidence 344555555555554 2332222221 1 22556666665553244332 12 23566666666654 344321 12
Q ss_pred hcCCCccEEEccCCCCC
Q 005073 575 NGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 575 ~~~~~Lk~L~Ls~~~is 591 (715)
..+++|+.|++++|.|.
T Consensus 178 ~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGCSSCCEEEECBC---
T ss_pred ccCCCCCEEEeeCcccC
Confidence 33566666666666553
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.69 E-value=1.3e-08 Score=106.76 Aligned_cols=35 Identities=34% Similarity=0.316 Sum_probs=17.1
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC 666 (715)
.+++|+.|++++|. +++. .. ...+++|+.|++++|
T Consensus 176 ~l~~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCC
Confidence 35555555555542 4331 12 234556666666554
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.66 E-value=1.8e-09 Score=111.90 Aligned_cols=194 Identities=19% Similarity=0.210 Sum_probs=112.5
Q ss_pred hCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHh
Q 005073 444 SAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA 523 (715)
Q Consensus 444 ~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~ 523 (715)
.+++|+.|+++++..-...++ .. + ++|+.|++++|.... . ..+..+++|++|+++++. +.... ...+ .
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l---~~-l-~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~L~~n~-l~~~~-~~~~-~ 106 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGI---QY-L-PNVRYLALGGNKLHD-I---SALKELTNLTYLILTGNQ-LQSLP-NGVF-D 106 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTG---GG-C-TTCCEEECTTSCCCC-C---GGGTTCTTCCEEECTTSC-CCCCC-TTTT-T
T ss_pred cccceeeeeeCCCCccccccc---cc-C-CCCcEEECCCCCCCC-c---hhhcCCCCCCEEECCCCc-cCccC-hhHh-c
Confidence 348889999888743222222 22 2 788889988886332 1 357788888888888763 32111 0011 1
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCC
Q 005073 524 CGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAG 603 (715)
Q Consensus 524 ~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~ 603 (715)
.+++|+.|++++| .++......+ ..+++|++|++++| .++.... .....+++|+.|+|++|.++......+ ...
T Consensus 107 ~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 180 (272)
T 3rfs_A 107 KLTNLKELVLVEN-QLQSLPDGVF-DKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVF--DKL 180 (272)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTC
T ss_pred CCcCCCEEECCCC-cCCccCHHHh-ccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCCcCccCHHHh--cCC
Confidence 2378888888887 3543222112 24678888888886 5543221 122457788888888887654211111 123
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 005073 604 EPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 604 ~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC 666 (715)
++|+.|+|+++. ++... ......+++|+.|+|++|+ ++ ..|++|+.|.++++
T Consensus 181 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 181 TQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP-WD--------CTCPGIRYLSEWIN 232 (272)
T ss_dssp TTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC-BC--------CCTTTTHHHHHHHH
T ss_pred ccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCC-cc--------ccCcHHHHHHHHHH
Confidence 678888887763 33211 1122456778888888765 22 24667777776654
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=1e-08 Score=118.53 Aligned_cols=171 Identities=22% Similarity=0.239 Sum_probs=120.8
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|++++|... .. +.+..+++|+.|+|+++....... + ..+++|+.|+|++| .+++.. .+. .++
T Consensus 43 ~~L~~L~l~~n~i~-~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l-~~l~~L~~L~Ls~N-~l~~l~--~l~-~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SV---QGIQYLPNVTKLFLNGNKLTDIKP----L-TNLKNLGWLFLDEN-KIKDLS--SLK-DLK 109 (605)
T ss_dssp TTCCCCBCTTCCCC-CC---TTGGGCTTCCEEECTTSCCCCCGG----G-GGCTTCCEEECCSS-CCCCCT--TST-TCT
T ss_pred CCCCEEECcCCCCC-CC---hHHccCCCCCEEEeeCCCCCCChh----h-ccCCCCCEEECcCC-CCCCCh--hhc-cCC
Confidence 78999999998633 21 247889999999999874322111 2 23489999999998 465532 333 589
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCc
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKL 632 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L 632 (715)
+|+.|+|++| .+++. .. ...+++|+.|+|++|.+.+. ..+ ...++|+.|+|++|. +++.. . ...+++|
T Consensus 110 ~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L 177 (605)
T 1m9s_A 110 KLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQ-ISDIV--P-LAGLTKL 177 (605)
T ss_dssp TCCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSSC-CCCCG--G-GTTCTTC
T ss_pred CCCEEEecCC-CCCCC--cc-ccCCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCCc-CCCch--h-hccCCCC
Confidence 9999999996 55542 22 34589999999999988763 222 134899999999974 44321 1 4568999
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccc
Q 005073 633 VNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAF 673 (715)
Q Consensus 633 ~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~ 673 (715)
+.|+|++|. |++. ..+ ..|++|+.|+|++|. ++..+
T Consensus 178 ~~L~Ls~N~-i~~l--~~l-~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 178 QNLYLSKNH-ISDL--RAL-AGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp CEEECCSSC-CCBC--GGG-TTCTTCSEEECCSEE-EECCC
T ss_pred CEEECcCCC-CCCC--hHH-ccCCCCCEEEccCCc-CcCCc
Confidence 999999975 6643 333 468999999999874 44443
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.63 E-value=1.6e-08 Score=116.98 Aligned_cols=79 Identities=27% Similarity=0.248 Sum_probs=35.7
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCC
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSN 630 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~ 630 (715)
+++|+.|+|++| .++.. .....+++|+.|+|++|.+.+... + ...++|+.|+|++| .+++. .. ...++
T Consensus 130 l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N-~i~~l--~~-l~~l~ 197 (605)
T 1m9s_A 130 LPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKN-HISDL--RA-LAGLK 197 (605)
T ss_dssp CTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSS-CCCBC--GG-GTTCT
T ss_pred CCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCcCCCchh--h--ccCCCCCEEECcCC-CCCCC--hH-HccCC
Confidence 455555555553 33321 122234555555555554433211 1 12245555555554 23321 11 23456
Q ss_pred CccEEEecCCC
Q 005073 631 KLVNLDLSWCR 641 (715)
Q Consensus 631 ~L~~LdLs~C~ 641 (715)
+|+.|+|++|+
T Consensus 198 ~L~~L~L~~N~ 208 (605)
T 1m9s_A 198 NLDVLELFSQE 208 (605)
T ss_dssp TCSEEECCSEE
T ss_pred CCCEEEccCCc
Confidence 66666666653
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.62 E-value=7e-10 Score=114.81 Aligned_cols=203 Identities=21% Similarity=0.214 Sum_probs=97.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCC
Q 005073 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~ 499 (715)
++|++|+|+++ .++..... .+..+++|+.|++++|. ++......+.. + ++|+.|+|++|..... ....+..++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~L~~n~l~~~--~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRCE-IQTIEDGAYQS-L-SHLSTLILTGNPIQSL--ALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTCC-CCEECTTTTTT-C-TTCCEEECTTCCCCEE--CTTTTTTCT
T ss_pred CCccEEECCCC-cccccCHh-HhccccCCcEEECCCCc-CCccCHHHccC-C-cCCCEEECCCCccCcc--ChhhhcCCc
Confidence 46888888874 44432211 23557888888888863 22211111211 1 6788888877753221 123356677
Q ss_pred CCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChH---HHHHHHhc
Q 005073 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDF---GIGYLANG 576 (715)
Q Consensus 500 ~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~---gl~~l~~~ 576 (715)
+|++|++.++....... .. + ...++|++|++++| .++...+......+++|+.|++++| .++.. .+..+. .
T Consensus 101 ~L~~L~l~~n~l~~~~~-~~-~-~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~ 174 (276)
T 2z62_A 101 SLQKLVAVETNLASLEN-FP-I-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH-Q 174 (276)
T ss_dssp TCCEEECTTSCCCCSTT-CC-C-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH-T
T ss_pred cccEEECCCCCccccCc-hh-c-ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh-h
Confidence 77777776653211100 00 1 12266777777776 3433221111224666777777664 44332 222222 2
Q ss_pred CCCcc-EEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 005073 577 CQAIQ-TLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWC 640 (715)
Q Consensus 577 ~~~Lk-~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C 640 (715)
++.|. .|++++|.+.......+ ...+|+.|+|+++. ++... ..+...+++|+.|+|+++
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCSS
T ss_pred ccccceeeecCCCcccccCcccc---CCCcccEEECCCCc-eeecC-HhHhcccccccEEEccCC
Confidence 33333 66666665543111111 11356666666542 32110 011233556666666653
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.62 E-value=2.4e-08 Score=104.62 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccC
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c 456 (715)
++|+.|++++|.. .+. . ....+++|+.|+|+++ .++.... +..+++|+.|++++|
T Consensus 46 ~~L~~L~l~~~~i--~~~------~-~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 46 NSIDQIIANNSDI--KSV------Q-GIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN 100 (291)
T ss_dssp HTCCEEECTTSCC--CCC------T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS
T ss_pred CcccEEEccCCCc--ccC------h-hHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC
Confidence 4566666665542 211 0 1244566666666653 2222111 344556666666554
No 98
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=1e-09 Score=113.50 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=46.7
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|++++|.. ... ....+..+++|++|+++++. +....... + ...++|+.|++++|. ++......+ ..++
T Consensus 52 ~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~ 124 (276)
T 2z62_A 52 PELQVLDLSRCEI-QTI-EDGAYQSLSHLSTLILTGNP-IQSLALGA-F-SGLSSLQKLVAVETN-LASLENFPI-GHLK 124 (276)
T ss_dssp TTCSEEECTTCCC-CEE-CTTTTTTCTTCCEEECTTCC-CCEECTTT-T-TTCTTCCEEECTTSC-CCCSTTCCC-TTCT
T ss_pred cCCcEEECCCCcC-Ccc-CHHHccCCcCCCEEECCCCc-cCccChhh-h-cCCccccEEECCCCC-ccccCchhc-ccCC
Confidence 4566666665532 111 11224455566666665542 11110000 0 112556666665552 322111111 1345
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
+|++|+++++ .++...+......+++|+.|+|++|.+.
T Consensus 125 ~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 125 TLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCC
Confidence 5666666553 3332222222334556666666665544
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.60 E-value=5.3e-09 Score=108.24 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=108.2
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|+++++..... ..+..+++|++|+++++...... . + ..+++|++|+|++| .++......+ ..++
T Consensus 41 ~~L~~L~l~~~~i~~~----~~l~~l~~L~~L~l~~n~l~~~~---~-l-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV----QGIQYLPNVRYLALGGNKLHDIS---A-L-KELTNLTYLILTGN-QLQSLPNGVF-DKLT 109 (272)
T ss_dssp TTCCEEECTTSCCCCC----TTGGGCTTCCEEECTTSCCCCCG---G-G-TTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred cceeeeeeCCCCcccc----cccccCCCCcEEECCCCCCCCch---h-h-cCCCCCCEEECCCC-ccCccChhHh-cCCc
Confidence 7899999998863322 23678899999999876432211 1 1 23378999999988 4554322222 2478
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCc
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKL 632 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L 632 (715)
+|++|++++| .++.... .....+++|+.|+|++|.++......+ ...++|+.|+|++|. ++... ......+++|
T Consensus 110 ~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 183 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQL 183 (272)
T ss_dssp TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred CCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCC-cCccC-HHHhcCCccC
Confidence 8999999886 4543221 123457889999998887653221111 123688888888863 43211 1122457888
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 633 VNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 633 ~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
++|++++|. ++.... .....+++|+.|++++|+
T Consensus 184 ~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCC
Confidence 888888864 543222 223457888888888764
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.53 E-value=2e-08 Score=93.74 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++| .+++..+......+++|+.|++++| .++.. .....+++|+.|+|++|.+... +...+.. .++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~-l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEK-CPN 89 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHH-CTT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhh-CCC
Confidence 45666666665 2442111122234566666666664 44432 2233456666777766665442 1112111 256
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHH--HHHHhcCCCccEEEEe
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEAL--GLIVDSCLSLRMLKLF 664 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l--~~L~~~~~~L~~L~L~ 664 (715)
|+.|+|+++ .+++.........+++|++|++++|. +++... ......+++|+.|+++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 666666664 34432222223456667777777653 433221 1233456666666654
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.52 E-value=1.3e-09 Score=110.32 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCcc---EEEecCCCCCChHHHHHHHhcCCCcc-EEEccCCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLC---TLDLSNLYKLTDFGIGYLANGCQAIQ-TLKLCRNAFS 591 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~---~L~Ls~c~~ltd~gl~~l~~~~~~Lk-~L~Ls~~~is 591 (715)
++|+.|++++|. ++.. .. ...+++|+ .|+++++..++...... ...+++|+ .|++++|.+.
T Consensus 105 ~~L~~L~l~~n~-l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 105 PLLKFLGIFNTG-LKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTCCEEEEEEEC-CCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSCCCC
T ss_pred CCCCEEeCCCCC-Cccc--cc-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCCCCc
Confidence 455555555542 3221 11 11344555 66666643443322111 22356666 7777666554
No 102
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.52 E-value=3.8e-09 Score=109.13 Aligned_cols=179 Identities=23% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcC
Q 005073 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACG 525 (715)
Q Consensus 446 p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~ 525 (715)
++|+.|+|+++. ++......+.. + ++|+.|+|++|... .. ....+..+++|++|+++++. +..... ..+ ...
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~l~~n~l~-~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~-~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHR-L-TKLRLLYLNDNKLQ-TL-PAGIFKELKNLETLWVTDNK-LQALPI-GVF-DQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSS-C-TTCCEEECCSSCCS-CC-CTTTTSSCTTCCEEECCSSC-CCCCCT-TTT-TTC
T ss_pred CCCCEEECcCCC-CCeeCHHHhcC-C-CCCCEEECCCCccC-ee-ChhhhcCCCCCCEEECCCCc-CCcCCH-hHc-ccc
Confidence 567888887763 22111111111 1 56777777776422 11 11224566777777776542 221000 001 112
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|+|++| .++......+ ..+++|++|+|++| .++..... ....+++|+.|+|++|.+.......+. ..++
T Consensus 109 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~ 182 (270)
T 2o6q_A 109 VNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFD--KLTE 182 (270)
T ss_dssp SSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTT
T ss_pred cCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCCcCcEeChhHhc--cCCC
Confidence 56777777766 2433221112 23566777777664 34332111 123456666666666654431111110 1245
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWC 640 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C 640 (715)
|+.|+|+++ .++... ......+++|+.|+|+++
T Consensus 183 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVP-EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred cCEEECCCC-cCCcCC-HHHhccccCCCEEEecCC
Confidence 666666554 222110 011123555666666554
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.47 E-value=2.3e-09 Score=108.60 Aligned_cols=59 Identities=8% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeecc
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQ 455 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~ 455 (715)
++|++|+|+++. +... .......+++|+.|+|+++..++..... .+..+++|+.|++++
T Consensus 31 ~~l~~L~l~~n~--l~~i-----~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTI-----PSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCC--CSEE-----CTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEE
T ss_pred CcccEEEEeCCc--ceEE-----CHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCC
Confidence 456666666654 2211 0112345666666666664323321110 123456666666665
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.47 E-value=5e-09 Score=109.83 Aligned_cols=201 Identities=14% Similarity=0.053 Sum_probs=113.5
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhh
Q 005073 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (715)
Q Consensus 417 ~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~ 496 (715)
..+++|++|+++++ .++.... ...++|+.|+|+++. ++......+... ++|+.|+|++|...... ...
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N~-l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~----~~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSENL-LYTFSLATLMPY--TRLTQLNLDRAELTKLQ----VDG 74 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTSC-CSEEEGGGGTTC--TTCCEEECTTSCCCEEE----CCS
T ss_pred cccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCCc-CCccCHHHhhcC--CCCCEEECCCCccCccc----CCC
Confidence 56788999998873 4432110 113678899998864 332211222222 77888888888632211 125
Q ss_pred cCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc
Q 005073 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (715)
Q Consensus 497 ~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~ 576 (715)
.+++|++|+++++. +.. +...+ ...++|+.|++++| .++......+ ..+++|+.|+|+++ .++.... ..+..
T Consensus 75 ~l~~L~~L~Ls~N~-l~~--l~~~~-~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~ 146 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQS--LPLLG-QTLPALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTLPP-GLLTP 146 (290)
T ss_dssp CCTTCCEEECCSSC-CSS--CCCCT-TTCTTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCCCT-TTTTT
T ss_pred CCCcCCEEECCCCc-CCc--Cchhh-ccCCCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCccCh-hhccc
Confidence 77888888888753 221 11111 12378888888887 3543222222 24678888888875 4543211 12235
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCC
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRN 642 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~ 642 (715)
+++|+.|+|++|.+.......+ ...++|+.|+|+++ .++. +..-...+++|+.|+|++++.
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~--~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTT--TTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCCB
T ss_pred ccCCCEEECCCCcCCccCHHHh--cCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCCc
Confidence 6788888888887653111111 11267888888875 3331 111122356788888887553
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.46 E-value=1.2e-08 Score=97.28 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=69.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|++++|. +++..+......+++|+.|++++| .++.. .....+++|+.|+|++|.+... +..+... .++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~-l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEK-LPN 96 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHH-CTT
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhh-CCC
Confidence 456666666652 432111112223566666666664 34432 2223456666666666655441 1111111 256
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHH--HHHHhcCCCccEEEEecCC
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEAL--GLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l--~~L~~~~~~L~~L~L~gC~ 667 (715)
|+.|+|++| .+++.........+++|+.|++++|. ++.... ...+..+++|+.|++++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 667766665 34432111223457888888888864 443221 1244568888888888875
No 106
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=2.9e-08 Score=102.52 Aligned_cols=83 Identities=27% Similarity=0.246 Sum_probs=35.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
++|+.|+|++| .++......+ ..+++|+.|+|++| .++...... ...+++|+.|+|++|.+.......+ ...++
T Consensus 133 ~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~ 206 (270)
T 2o6q_A 133 TKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEGAF--DSLEK 206 (270)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTT--TTCTT
T ss_pred cCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCCcCCcCCHHHh--ccccC
Confidence 45555555554 2332211111 13455666666553 333211111 1234566666666654432111111 11255
Q ss_pred ccEEEeCCC
Q 005073 606 LKELSLNNV 614 (715)
Q Consensus 606 L~~L~L~~c 614 (715)
|+.|+|+++
T Consensus 207 L~~L~l~~N 215 (270)
T 2o6q_A 207 LKMLQLQEN 215 (270)
T ss_dssp CCEEECCSS
T ss_pred CCEEEecCC
Confidence 666666654
No 107
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.41 E-value=2.1e-06 Score=84.54 Aligned_cols=123 Identities=14% Similarity=0.304 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC---CCccEEEecCCCCCChHHHHHHHh---cCCCccEEEccCCC
Q 005073 516 FVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETC---PRLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNA 589 (715)
Q Consensus 516 ~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~---p~L~~L~Ls~c~~ltd~gl~~l~~---~~~~Lk~L~Ls~~~ 589 (715)
.+..++.. .+.|++|+|+++..|++.+...|+..+ ..|+.|+|++| .++|.|..+++. .-..|++|+|++|.
T Consensus 32 ~l~~ll~~-n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 32 CINRLRED-DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHTT-CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHhc-CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 44444433 367888888775467777776666543 57888888875 788877666552 33678888888888
Q ss_pred CCHHHHHHHHHhC--CCCccEEEeCCCC--CCCHHHHHHHH---hcCCCccEEEecCC
Q 005073 590 FSDEAIAAFLETA--GEPLKELSLNNVR--KVADNTALSLA---KRSNKLVNLDLSWC 640 (715)
Q Consensus 590 isd~~l~~Ll~~~--~~~L~~L~L~~c~--~I~d~~l~~L~---~~~~~L~~LdLs~C 640 (715)
|++.|..++.+.. ...|++|+|+++. .+++.+...++ ..-+.|+.|+++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 8888888776653 4668888887642 57777655554 34578888888774
No 108
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.33 E-value=4e-06 Score=82.52 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred hHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC---CCccEEEccCCCCCHHHHHHHHHh--CCCCccEEEeCCCC
Q 005073 541 DFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC---QAIQTLKLCRNAFSDEAIAAFLET--AGEPLKELSLNNVR 615 (715)
Q Consensus 541 d~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~---~~Lk~L~Ls~~~isd~~l~~Ll~~--~~~~L~~L~L~~c~ 615 (715)
+..+..+...-+.|+.|+|++++.+++.|...++..+ ..|+.|+|++|.|+|.+..++.+. ..+.|++|+|+++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N- 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN- 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-
Confidence 3456666666789999999986699999988877443 579999999999999887665432 2489999999985
Q ss_pred CCCHHHHHHHHhc---CCCccEEEecCCC--CCCHHHHHHHHh---cCCCccEEEEecC
Q 005073 616 KVADNTALSLAKR---SNKLVNLDLSWCR--NLSDEALGLIVD---SCLSLRMLKLFGC 666 (715)
Q Consensus 616 ~I~d~~l~~L~~~---~~~L~~LdLs~C~--~Ltd~~l~~L~~---~~~~L~~L~L~gC 666 (715)
.|++.++.+|+.. -+.|++|+|++|. .+++.+...|++ .-+.|+.|+++.+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 7999999998764 3579999999763 588887655544 4678999998754
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.32 E-value=2.9e-07 Score=85.77 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=44.1
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|++++|.. .+..+...+..+++|+.|+++++. +... ..+ ...++|+.|++++| .++.. +..+...++
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~-~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVG-LTSI---ANL-PKLNKLKKLELSDN-RVSGG-LEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTC-CCCTTCCEEECCSS-CCCSC-THHHHHHCT
T ss_pred ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhh-hcCCCCCEEECCCC-cccch-HHHHhhhCC
Confidence 4566666666542 211112233455555555555542 2211 001 11245555555554 23331 112222345
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
+|+.|++++| .+++.........+++|+.|++++|.+
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 5555555543 343322212223344455555544433
No 110
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.32 E-value=6.5e-08 Score=101.29 Aligned_cols=199 Identities=22% Similarity=0.180 Sum_probs=123.0
Q ss_pred hCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHh
Q 005073 444 SAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA 523 (715)
Q Consensus 444 ~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~ 523 (715)
.+++|+.++++++. ++. +....+++|+.|+|++|..... ....+..+++|++|+++++. ++.... . .
T Consensus 8 ~l~~l~~l~~~~~~-l~~-----ip~~~~~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~--~--~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTA-----LPPDLPKDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAE-LTKLQV--D--G 74 (290)
T ss_dssp CSTTCCEEECTTSC-CSS-----CCSCCCTTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSC-CCEEEC--C--S
T ss_pred ccCCccEEECCCCC-CCc-----CCCCCCCCCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECCCCc-cCcccC--C--C
Confidence 46889999998853 321 1112347899999999964322 23457889999999998763 332110 0 2
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCC
Q 005073 524 CGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAG 603 (715)
Q Consensus 524 ~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~ 603 (715)
..++|+.|+|++| .++.. ......+++|+.|+++++ .++..... .+..+++|+.|+|++|.+.......+ ...
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l 147 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLL--TPT 147 (290)
T ss_dssp CCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTT--TTC
T ss_pred CCCcCCEEECCCC-cCCcC--chhhccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCCCCCccChhhc--ccc
Confidence 3488999999998 45421 112235789999999985 55532211 23457889999999987754211111 123
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 604 EPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 604 ~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
++|+.|+|+++ .++... ..+...+++|+.|+|+++. ++. +..-...+++|+.|.|++++
T Consensus 148 ~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 148 PKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCC
T ss_pred cCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCC
Confidence 68899999886 343110 1122457889999998864 541 21112245688888888754
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=1.2e-07 Score=97.80 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=18.2
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGC 666 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC 666 (715)
.+++|+.|++++|. +++. . ....+++|+.|+++++
T Consensus 148 ~l~~L~~L~L~~N~-i~~~--~-~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE-ITNT--G-GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GCTTCCEEECTTSC-CCBC--T-TSTTCCCCCEEEEEEE
T ss_pred cCCCCCEEECCCCc-Ccch--H-HhccCCCCCEEeCCCC
Confidence 35566666666643 4332 1 1234566666666654
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.18 E-value=2e-07 Score=88.82 Aligned_cols=15 Identities=27% Similarity=-0.053 Sum_probs=8.0
Q ss_pred hcCCCccEEEecCCC
Q 005073 627 KRSNKLVNLDLSWCR 641 (715)
Q Consensus 627 ~~~~~L~~LdLs~C~ 641 (715)
..+++|++|++++|.
T Consensus 144 ~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 144 KLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCSSCCEETTEETT
T ss_pred HhCccCcEecCCCCC
Confidence 345555555555543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=7.6e-07 Score=91.73 Aligned_cols=100 Identities=24% Similarity=0.316 Sum_probs=43.3
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|++++|.. ... .. +..+++|++|+++++. +.. +..+ ..++|+.|++++| .+++. ..+ ..++
T Consensus 63 ~~L~~L~L~~N~i-~~~--~~-l~~l~~L~~L~L~~N~-l~~--l~~~---~~~~L~~L~L~~N-~l~~~--~~l-~~l~ 128 (263)
T 1xeu_A 63 TNLKELHLSHNQI-SDL--SP-LKDLTKLEELSVNRNR-LKN--LNGI---PSACLSRLFLDNN-ELRDT--DSL-IHLK 128 (263)
T ss_dssp TTCCEEECCSSCC-CCC--GG-GTTCSSCCEEECCSSC-CSC--CTTC---CCSSCCEEECCSS-CCSBS--GGG-TTCT
T ss_pred CCCCEEECCCCcc-CCC--hh-hccCCCCCEEECCCCc-cCC--cCcc---ccCcccEEEccCC-ccCCC--hhh-cCcc
Confidence 5566666665542 221 11 5555666666665542 211 0000 0145555665555 34332 111 1345
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
+|+.|++++| .+++.. ....+++|+.|+|++|.+
T Consensus 129 ~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 129 NLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp TCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSCC
T ss_pred cccEEECCCC-cCCCCh---HHccCCCCCEEECCCCcC
Confidence 5555555553 343321 122345555555555444
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.15 E-value=2.5e-07 Score=94.36 Aligned_cols=177 Identities=20% Similarity=0.167 Sum_probs=104.1
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
...+.++++++.. ... ... -.++|+.|+++++. +....... + ...++|+.|+|++| .++......+ ..++
T Consensus 14 ~~~~~l~~~~~~l-~~~--p~~--~~~~l~~L~L~~n~-l~~~~~~~-~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSL-DSV--PSG--IPADTEKLDLQSTG-LATLSDAT-F-RGLTKLTWLNLDYN-QLQTLSAGVF-DDLT 83 (251)
T ss_dssp GGGTEEECTTCCC-SSC--CSC--CCTTCCEEECTTSC-CCCCCTTT-T-TTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred CCCeEEecCCCCc-ccc--CCC--CCCCCCEEEccCCC-cCccCHhH-h-cCcccCCEEECCCC-cCCccCHhHh-ccCC
Confidence 3466777776642 211 111 12589999998763 22111111 1 12378999999998 4654332222 2478
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCc
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKL 632 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L 632 (715)
+|+.|+|+++ .++.... .....+++|+.|+|++|.+.......+ ...++|+.|+|+++ .++.... .....+++|
T Consensus 84 ~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L 157 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTN-QLQSIPA-GAFDKLTNL 157 (251)
T ss_dssp TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred cCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCC-cCCccCH-HHcCcCcCC
Confidence 9999999985 5553222 223457899999999987763211111 12378999999886 4442111 112457889
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 633 VNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 633 ~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
++|+|++|. ++..... .+..+++|+.|+|++++
T Consensus 158 ~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQ-LQSVPHG-AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred CEEECCCCc-CCccCHH-HHhCCCCCCEEEeeCCc
Confidence 999998864 5432222 23467889999988864
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.12 E-value=1.2e-06 Score=100.47 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=105.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCC
Q 005073 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~ 499 (715)
.+|+.|+|+++ .++. +.. ..+++|+.|+|++|. ++. +. . ..++|+.|+|++|.. ... .. +..
T Consensus 59 ~~L~~L~Ls~n-~L~~--lp~--~l~~~L~~L~Ls~N~-l~~--ip---~-~l~~L~~L~Ls~N~l-~~i--p~-l~~-- 120 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS--LPD--NLPPQITVLEITQNA-LIS--LP---E-LPASLEYLDACDNRL-STL--PE-LPA-- 120 (571)
T ss_dssp TTCSEEECCSS-CCSC--CCS--CCCTTCSEEECCSSC-CSC--CC---C-CCTTCCEEECCSSCC-SCC--CC-CCT--
T ss_pred CCccEEEeCCC-CCCc--cCH--hHcCCCCEEECcCCC-Ccc--cc---c-ccCCCCEEEccCCCC-CCc--ch-hhc--
Confidence 47888888874 3433 111 113678888888863 221 11 1 137788888888753 221 11 222
Q ss_pred CCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 005073 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQA 579 (715)
Q Consensus 500 ~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~ 579 (715)
+|++|+++++. ++. +.. .+++|+.|+|++| .++. +...+++|+.|+|++| .++.. ..+ .++
T Consensus 121 ~L~~L~Ls~N~-l~~--lp~----~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~L~~l--p~l---~~~ 181 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTM--LPE----LPALLEYINADNN-QLTM-----LPELPTSLEVLSVRNN-QLTFL--PEL---PES 181 (571)
T ss_dssp TCCEEECCSSC-CSC--CCC----CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCC--CCC---CTT
T ss_pred CCCEEECCCCc-CCC--CCC----cCccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCC-CCCCc--chh---hCC
Confidence 78888887753 322 111 3377888888887 3543 1224678888888875 45442 111 267
Q ss_pred ccEEEccCCCCCHHHH-HHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHH
Q 005073 580 IQTLKLCRNAFSDEAI-AAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIV 652 (715)
Q Consensus 580 Lk~L~Ls~~~isd~~l-~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~ 652 (715)
|+.|+|++|.++.-.. ..-+....+.|+.|+|+++ .|+. +..-...+++|+.|+|++|. ++......+.
T Consensus 182 L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~-l~~~~p~~l~ 251 (571)
T 3cvr_A 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNP-LSSRIRESLS 251 (571)
T ss_dssp CCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSS-CCHHHHHHHH
T ss_pred CCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCc-CCCcCHHHHH
Confidence 8888888887653110 0000001122388888775 3441 12212237788888888854 7666555543
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.10 E-value=3.9e-07 Score=92.86 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCC
Q 005073 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~ 499 (715)
++|+.|+|+++ .++..... .+..+++|+.|+|+++. +.......+.. + ++|+.|+|++|..... ....+..++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l-~~L~~L~L~~n~l~~~--~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDA-TFRGLTKLTWLNLDYNQ-LQTLSAGVFDD-L-TELGTLGLANNQLASL--PLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCTTTTTT-C-TTCCEEECTTSCCCCC--CTTTTTTCT
T ss_pred CCCCEEEccCC-CcCccCHh-HhcCcccCCEEECCCCc-CCccCHhHhcc-C-CcCCEEECCCCccccc--ChhHhcccC
Confidence 35666666653 22221111 12345666666666542 11110000111 1 4566666655542211 112234555
Q ss_pred CCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 005073 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQA 579 (715)
Q Consensus 500 ~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~ 579 (715)
+|++|+++++. +..... ..+ ...++|+.|+|++| .++......+. .+++|+.|+|+++ .++..... ....+++
T Consensus 108 ~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~ 180 (251)
T 3m19_A 108 QLDKLYLGGNQ-LKSLPS-GVF-DRLTKLKELRLNTN-QLQSIPAGAFD-KLTNLQTLSLSTN-QLQSVPHG-AFDRLGK 180 (251)
T ss_dssp TCCEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTT
T ss_pred CCCEEEcCCCc-CCCcCh-hHh-ccCCcccEEECcCC-cCCccCHHHcC-cCcCCCEEECCCC-cCCccCHH-HHhCCCC
Confidence 56666655532 210000 000 11245556665555 23322111111 2455555555553 33321111 1123455
Q ss_pred ccEEEccCCCC
Q 005073 580 IQTLKLCRNAF 590 (715)
Q Consensus 580 Lk~L~Ls~~~i 590 (715)
|+.|+|++|.+
T Consensus 181 L~~L~l~~N~~ 191 (251)
T 3m19_A 181 LQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSCCB
T ss_pred CCEEEeeCCce
Confidence 55555555544
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.06 E-value=5.1e-08 Score=104.68 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCc
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKL 632 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L 632 (715)
++..|++.++..++......+......|+.|+|++|.+..-.-..+ .+.+|++|.+.+++.++.-.- .....+++|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L 204 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPN-DVFHGASGP 204 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCT-TTTTTEECC
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCH-HHhccCccc
Confidence 4455555554444332211122222356667777666543111111 124677777766554442110 112346777
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeEEec
Q 005073 633 VNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQIIGL 687 (715)
Q Consensus 633 ~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~l~L 687 (715)
+.|+|+++. |+.-. ...+.+|+.|.+.+|.+++..+- -..+++|+.+.+
T Consensus 205 ~~LdLs~N~-l~~lp----~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 205 VILDISRTR-IHSLP----SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp SEEECTTSC-CCCCC----SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred chhhcCCCC-cCccC----hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 777777753 54211 12356677777777766655431 224455555544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=1.1e-07 Score=109.10 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCH
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSD 592 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd 592 (715)
..|+.|+|++| .++.. ..+ ..+++|+.|+|++| .++. +......+++|+.|+|++|.++.
T Consensus 441 ~~L~~L~Ls~n-~l~~l--p~~-~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVL--CHL-EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp TTCSEEECTTS-CCSSC--CCG-GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCC
T ss_pred cCceEEEecCC-CCCCC--cCc-cccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCCCCCC
Confidence 35777777776 35432 122 24667777777764 4442 22223346677777777666543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.01 E-value=1e-06 Score=84.66 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=24.9
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
++|+.|++++| .++.. ..+ ..+++|+.|++++| .++.... .+...+++|+.|+|++|.+
T Consensus 42 ~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNNSL 100 (176)
T ss_dssp TCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSCCC
T ss_pred CCCCEEECCCC-CCCcc--ccc-ccCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCCcC
Confidence 35566666555 34432 111 12445555555553 3332110 1112344555555555544
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.96 E-value=2.2e-06 Score=98.19 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=123.6
Q ss_pred HHHHHH-hhCCCCCEEeeccCCCCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHH
Q 005073 437 GFKALV-TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDE 515 (715)
Q Consensus 437 ~l~~L~-~~~p~L~~L~Ls~c~~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~ 515 (715)
.+..+. ..+.+|+.|+++++. ++. +....+++|+.|+|++|.. .. +. ..+++|++|+++++. ++.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~-L~~-----lp~~l~~~L~~L~Ls~N~l-~~--ip---~~l~~L~~L~Ls~N~-l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLN-LSS-----LPDNLPPQITVLEITQNAL-IS--LP---ELPASLEYLDACDNR-LST- 114 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSC-CSC-----CCSCCCTTCSEEECCSSCC-SC--CC---CCCTTCCEEECCSSC-CSC-
T ss_pred hhhhccccccCCccEEEeCCCC-CCc-----cCHhHcCCCCEEECcCCCC-cc--cc---cccCCCCEEEccCCC-CCC-
Confidence 454442 224689999999974 332 1111237899999999963 32 22 567899999999863 332
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHH
Q 005073 516 FVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAI 595 (715)
Q Consensus 516 ~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l 595 (715)
+.. ...+|+.|+|++| .++.. ...+++|+.|+|++| .++.. . ..+++|+.|+|++|.++. +
T Consensus 115 -ip~----l~~~L~~L~Ls~N-~l~~l-----p~~l~~L~~L~Ls~N-~l~~l--p---~~l~~L~~L~Ls~N~L~~--l 175 (571)
T 3cvr_A 115 -LPE----LPASLKHLDVDNN-QLTML-----PELPALLEYINADNN-QLTML--P---ELPTSLEVLSVRNNQLTF--L 175 (571)
T ss_dssp -CCC----CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSCCSC--C
T ss_pred -cch----hhcCCCEEECCCC-cCCCC-----CCcCccccEEeCCCC-ccCcC--C---CcCCCcCEEECCCCCCCC--c
Confidence 222 2248999999998 46541 115789999999986 56542 1 157899999999998765 2
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCHHHH-H-HHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCccc
Q 005073 596 AAFLETAGEPLKELSLNNVRKVADNTA-L-SLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAF 673 (715)
Q Consensus 596 ~~Ll~~~~~~L~~L~L~~c~~I~d~~l-~-~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~ 673 (715)
..+ +++|+.|+|+++ .|+.-.. . .+....+.|+.|+|++|. |+.- ...+. .+++|+.|+|++++ ++...
T Consensus 176 p~l----~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~l-p~~l~-~l~~L~~L~L~~N~-l~~~~ 246 (571)
T 3cvr_A 176 PEL----PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHI-PENIL-SLDPTCTIILEDNP-LSSRI 246 (571)
T ss_dssp CCC----CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCC-CGGGG-GSCTTEEEECCSSS-CCHHH
T ss_pred chh----hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceec-CHHHh-cCCCCCEEEeeCCc-CCCcC
Confidence 221 279999999986 4441100 0 111112334999999964 6621 12233 48999999999974 55543
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.94 E-value=3.6e-06 Score=96.36 Aligned_cols=199 Identities=21% Similarity=0.204 Sum_probs=101.5
Q ss_pred CccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCC--CCChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcC
Q 005073 421 SLTTLSICGACRISDVGFKALVTSAPALRSINLSQCS--LLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (715)
Q Consensus 421 ~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~--~l~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l 498 (715)
++++|+|++ +.++...-.. +..+++|+.|+|++|. .+.+..+..+ ++|++|+|++|.. ... ....+..+
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-----~~L~~L~Ls~N~l-~~l-~~~~f~~L 123 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSL-----SHLSTLILTGNPI-QSL-ALGAFSGL 123 (635)
T ss_dssp TCCEEECTT-SCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTC-----TTCCEEECTTCCC-CEE-CGGGGTTC
T ss_pred CCCEEEeeC-CCCCCCCHHH-HhCCCCCCEEECCCCcCCCcChhHhcCC-----CCCCEEEccCCcC-CCC-CHHHhcCC
Confidence 788888888 4554321111 3567888888888863 1222222222 6788888888752 221 12346777
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCC---hHHHHHHHh
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLT---DFGIGYLAN 575 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~lt---d~gl~~l~~ 575 (715)
++|++|+++++. +.. +........++|++|+|++| .++...+......+++|++|+++++ .++ ...+..+..
T Consensus 124 ~~L~~L~Ls~N~-l~~--l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 124 SSLQKLVAVETN-LAS--LENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQ 198 (635)
T ss_dssp TTCCEEECTTSC-CCC--STTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHT
T ss_pred CCCCEEECCCCc-CCC--CChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-cccccccccccchhh
Confidence 888888887653 221 00000012367788888776 3433222222234677777777774 343 233444443
Q ss_pred cCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEe
Q 005073 576 GCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDL 637 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdL 637 (715)
....+..++++.|.+.......+ ....+..|.+.+. ...-.........++.|+.+.+
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~---~~~~~~~l~l~~n-~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTT---TTCEEEEEEEESC-CSSHHHHHHHHHTTTTCEEEEE
T ss_pred hhhhhhhhhcccCcccccCcccc---cchhhhhhhhhcc-cccccccchhhcCCcccccccc
Confidence 33345566776665532111111 1134555666553 2222222333344555555544
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.85 E-value=1e-06 Score=86.48 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHH---------HH
Q 005073 578 QAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDE---------AL 648 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~---------~l 648 (715)
++|+.|+|++|.++... .+... ++|+.|+|+++ .+++.........+++|++|++++|. +++. ..
T Consensus 93 ~~L~~L~L~~N~l~~l~--~~~~l--~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS--GIEKL--VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYR 166 (198)
T ss_dssp HHCSEEEEEEEECCCHH--HHHHH--HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHH
T ss_pred CcCCEEECcCCcCCcCC--ccccC--CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHH
Confidence 44555555555444311 11111 45555555554 23322211122346666666666653 3222 11
Q ss_pred HHHHhcCCCccEEE
Q 005073 649 GLIVDSCLSLRMLK 662 (715)
Q Consensus 649 ~~L~~~~~~L~~L~ 662 (715)
..+...+++|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 22344577777775
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.85 E-value=6.7e-08 Score=103.77 Aligned_cols=226 Identities=14% Similarity=0.121 Sum_probs=114.7
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccCCCCChHHHHHHH
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c~~l~~~~l~~L~ 468 (715)
++|++|+|+++. ++.. ....+.++++|++|+|+++..++.... ..+..+++|.++.+.++..+....-..+.
T Consensus 30 ~~l~~L~Ls~N~--i~~i-----~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVI-----QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCC--CSEE-----CTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCc--CCCc-----CHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhh
Confidence 467777777654 2211 011235667777777776433221110 11234566665544443333321111111
Q ss_pred HHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 005073 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (715)
Q Consensus 469 ~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~ 548 (715)
. + ++|+.|++++|...... ........++..|++.++..+..-....+ ......++.|++++| .|+..... +
T Consensus 102 ~-l-~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~f-~~~~~~l~~L~L~~N-~i~~i~~~--~ 173 (350)
T 4ay9_X 102 N-L-PNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKN-GIQEIHNS--A 173 (350)
T ss_dssp C-C-TTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTTSS-TTSBSSCEEEECCSS-CCCEECTT--S
T ss_pred h-c-cccccccccccccccCC--chhhcccchhhhhhhccccccccccccch-hhcchhhhhhccccc-cccCCChh--h
Confidence 1 1 56777777776422111 00122334555666654433321110011 111246888888887 45432111 1
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
....+|+.|.+.+++.++...-. .+..+++|+.|+|++|.++.-.. ....+|++|.+.++..++.- .. ...
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~~~l~~l--P~-l~~ 244 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYNLKKL--PT-LEK 244 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTCTTCCCC--CC-TTT
T ss_pred ccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccCCCcCcC--CC-chh
Confidence 12457888888877666543221 23457889999999987754211 11267888888777655421 11 245
Q ss_pred CCCccEEEecC
Q 005073 629 SNKLVNLDLSW 639 (715)
Q Consensus 629 ~~~L~~LdLs~ 639 (715)
+++|+.+++.+
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 78888888875
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.81 E-value=6.2e-06 Score=79.15 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=26.3
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccC
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c 456 (715)
++|+.|+++++.. ... +.+...+++|+.|+|+++ .++.. ..+..+++|+.|++++|
T Consensus 19 ~~L~~L~l~~n~l--~~i------~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 19 VRDRELDLRGYKI--PVI------ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp TSCEEEECTTSCC--CSC------CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS
T ss_pred CCceEEEeeCCCC--chh------HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC
Confidence 5666666666542 210 112222346666666663 33321 11234455556665554
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=4.8e-07 Score=96.10 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCC-CCCCHHHHHHHHhcCC
Q 005073 552 PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNV-RKVADNTALSLAKRSN 630 (715)
Q Consensus 552 p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c-~~I~d~~l~~L~~~~~ 630 (715)
.++..+.+.+ .+....+..+...|++|+.|+|.+|.+..-+-.+| ..+.+|+.|.|.+. ..|.+. ...+|+
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~ni~~I~~~----aF~~~~ 273 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHNLKTIGQR----VFSNCG 273 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTTCCEECTT----TTTTCT
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcccceehHH----HhhCCh
Confidence 3455555554 34444555555556666666666554432111111 12356666666542 112211 123577
Q ss_pred Ccc-EEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccc
Q 005073 631 KLV-NLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFL 674 (715)
Q Consensus 631 ~L~-~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l 674 (715)
+|+ .|+|.. .++.-+-. .+.+|++|+.|.+.+ .+++..+-
T Consensus 274 ~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 274 RLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG-DKITTLGD 314 (329)
T ss_dssp TCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS-SCCCEECT
T ss_pred hccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC-CccCccch
Confidence 787 888776 23322112 234688888888765 34555443
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.70 E-value=2.1e-06 Score=86.41 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=67.8
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|++|+|+++. +..... ..+. ..++|+.|+|++| .++......+ ..+++|+.|+|+++ .++...- ..+..++
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~-~~~~-~l~~L~~L~L~~N-~l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEP-GVFD-SLINLKELYLGSN-QLGALPVGVF-DSLTQLTVLDLGTN-QLTVLPS-AVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTT-TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCEEEcCCCc-cCccCH-HHhh-CccCCcEEECCCC-CCCCcChhhc-ccCCCcCEEECCCC-cCCccCh-hHhCcch
Confidence 678888887753 221100 0111 2267888888877 3443221111 24677888888775 5543211 1223467
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
+|+.|+|++|.+.. +..-+ ...++|+.|+|+++ .++.... .....+++|+.|+|++++
T Consensus 113 ~L~~L~Ls~N~l~~--lp~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNKLTE--LPRGI-ERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSCCCS--CCTTG-GGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCcccc--cCccc-ccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 77888887776652 11111 12266777777764 3331110 112345677777777654
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=3.7e-06 Score=89.21 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCC--CCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhc
Q 005073 577 CQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNV--RKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDS 654 (715)
Q Consensus 577 ~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c--~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~ 654 (715)
..++..+.+.++ +....+..+.. .+++|+.|+|.++ ..|.+. ....|++|+.|+|... ++.-+-. .+.+
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~-~~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n--i~~I~~~-aF~~ 271 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRD-YMPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN--LKTIGQR-VFSN 271 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHH-HCTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT--CCEECTT-TTTT
T ss_pred ccccceEEEeee-ecHHHHHHHHH-hcCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc--cceehHH-HhhC
Confidence 456777777654 44555554443 3489999999874 233322 2246889999999873 4322222 2357
Q ss_pred CCCcc-EEEEecCCCCCcccccC-CCCCCeeEEecCCCCCCCeee
Q 005073 655 CLSLR-MLKLFGCSQITNAFLDG-HSNPDVQIIGLKMSPVLEHVK 697 (715)
Q Consensus 655 ~~~L~-~L~L~gC~~lt~~~l~~-~~~~~L~~l~L~~cp~L~~L~ 697 (715)
|++|+ .|.+.+ .++..+-.. ..|++|+.+.+. .+.++.+.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~-~n~i~~I~ 313 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT-GDKITTLG 313 (329)
T ss_dssp CTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC-SSCCCEEC
T ss_pred ChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC-CCccCccc
Confidence 88998 999976 566554332 367777777664 23455544
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.68 E-value=2.3e-06 Score=84.28 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=6.3
Q ss_pred hCCCCCEEeeccC
Q 005073 444 SAPALRSINLSQC 456 (715)
Q Consensus 444 ~~p~L~~L~Ls~c 456 (715)
.+++|++|+++++
T Consensus 50 ~l~~L~~L~l~~n 62 (208)
T 2o6s_A 50 ELTSLTQLYLGGN 62 (208)
T ss_dssp TCTTCSEEECCSS
T ss_pred ccccCcEEECCCC
Confidence 3445555555443
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.67 E-value=1.8e-05 Score=77.41 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=6.9
Q ss_pred hhCCCCCEEeeccC
Q 005073 443 TSAPALRSINLSQC 456 (715)
Q Consensus 443 ~~~p~L~~L~Ls~c 456 (715)
..+++|+.|++++|
T Consensus 45 ~~l~~L~~L~ls~n 58 (198)
T 1ds9_A 45 STLKACKHLALSTN 58 (198)
T ss_dssp HHTTTCSEEECSEE
T ss_pred hcCCCCCEEECCCC
Confidence 33455555555544
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.62 E-value=3e-06 Score=83.46 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=85.7
Q ss_pred CCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC
Q 005073 498 LKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC 577 (715)
Q Consensus 498 l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~ 577 (715)
.++|++|+++++. +.... ...+ ...++|++|+|++| .++......+ ..+++|++|+|+++ .++.... .....+
T Consensus 27 ~~~l~~L~l~~n~-l~~~~-~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLP-NGVF-DELTSLTQLYLGGN-KLQSLPNGVF-NKLTSLTYLNLSTN-QLQSLPN-GVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTT-TTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCCc-cCcCC-hhhh-cccccCcEEECCCC-ccCccChhhc-CCCCCcCEEECCCC-cCCccCH-hHhcCc
Confidence 4578899888763 32111 0111 12378899999887 4553222112 34788888888885 4543211 123457
Q ss_pred CCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 005073 578 QAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLS 657 (715)
Q Consensus 578 ~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~ 657 (715)
++|+.|+|++|.+.......+ ...++|+.|+|+++ .++... ......+++|++|+|++++ ++ ..|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-~~--------~~~~~ 166 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP-WD--------CTCPG 166 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC-BC--------CCTTT
T ss_pred cCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCC-ee--------cCCCC
Confidence 888888888887653211111 12367888888875 333111 1122456788888888865 22 24677
Q ss_pred ccEEEEecC
Q 005073 658 LRMLKLFGC 666 (715)
Q Consensus 658 L~~L~L~gC 666 (715)
|+.|.++++
T Consensus 167 l~~L~~~~n 175 (208)
T 2o6s_A 167 IRYLSEWIN 175 (208)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.60 E-value=4.1e-06 Score=90.16 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH--hc
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA--ET 550 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~--~~ 550 (715)
++|+.|+|++|.. ... ....+..+++|+.|+|+++. +....... + ...++|+.|+|++| .++......+. ..
T Consensus 88 ~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 88 PNLRYLDLSSNHL-HTL-DEFLFSDLQALEVLLLYNNH-IVVVDRNA-F-EDMAQLQKLYLSQN-QISRFPVELIKDGNK 161 (361)
T ss_dssp TTCCEEECCSSCC-CEE-CTTTTTTCTTCCEEECCSSC-CCEECTTT-T-TTCTTCCEEECCSS-CCCSCCGGGTC----
T ss_pred CCCCEEECCCCcC-CcC-CHHHhCCCcCCCEEECCCCc-ccEECHHH-h-CCcccCCEEECCCC-cCCeeCHHHhcCccc
Confidence 4566666666542 111 11224556666666666542 21110000 1 11256666666665 34332111110 13
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCC--ccEEEccCCCC
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQA--IQTLKLCRNAF 590 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~--Lk~L~Ls~~~i 590 (715)
+++|+.|+|+++ .++......+.. ++. |+.|+|.+|.+
T Consensus 162 l~~L~~L~L~~N-~l~~l~~~~~~~-l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 162 LPKLMLLDLSSN-KLKKLPLTDLQK-LPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CTTCCEEECCSS-CCCCCCHHHHHH-SCHHHHTTEECCSSCE
T ss_pred CCcCCEEECCCC-CCCccCHHHhhh-ccHhhcceEEecCCCc
Confidence 566677776663 444433333322 343 35666766654
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.58 E-value=2.8e-06 Score=84.93 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=67.8
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
+.++.|+++++. +........+ ...++|+.|+|++| .++......+. .+++|+.|+|+++ .++..... ....++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~-~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIF-KKLPQLRKINFSNN-KITDIEEGAFE-GASGVNEILLTSN-RLENVQHK-MFKGLE 105 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCG-GGCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCCCCCGG-GGTTCS
T ss_pred CCCCEEEcCCCc-CCccCchhhh-ccCCCCCEEECCCC-cCCEECHHHhC-CCCCCCEEECCCC-ccCccCHh-HhcCCc
Confidence 456788887653 2211000001 12367888888877 35543222222 4677888888774 44432211 223567
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
+|+.|+|++|.+....-..+. ..++|+.|+|+++ .++... ......+++|+.|+|++++
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDN-QITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCeECHhHcC--CCccCCEEECCCC-cCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 788888877766432111111 1256777777664 232110 0112345667777777654
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.57 E-value=3e-06 Score=84.71 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=66.7
Q ss_pred CCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (715)
Q Consensus 499 ~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~ 578 (715)
++|+.|+++++. +...... .+ ...++|+.|+|++| .++......+. .+++|+.|+|+++ .++...- .++..++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~-~~-~~l~~L~~L~Ls~N-~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG-AF-SPYKKLRRIDLSNN-QISELAPDAFQ-GLRSLNSLVLYGN-KITELPK-SLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT-SS-TTCTTCCEEECCSS-CCCEECTTTTT-TCSSCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cCCCEEECCCCc-CCCcCHh-Hh-hCCCCCCEEECCCC-cCCCcCHHHhh-CCcCCCEEECCCC-cCCccCH-hHccCCC
Confidence 577888887652 2211000 01 12267888888877 35433222222 3677788887774 4443211 1223467
Q ss_pred CccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 005073 579 AIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCR 641 (715)
Q Consensus 579 ~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~ 641 (715)
+|+.|+|++|.+.......+. ..++|+.|+|+++. ++.... .....+++|+.|+|++++
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCHHHcC--CCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCCC
Confidence 777777777766432111111 12567777776642 221110 112235667777776654
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.55 E-value=4.4e-06 Score=89.92 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|+|++|... .. ....+..+++|++|+|+++. +..... ..+ ...++|+.|+|++| .|+......+. .++
T Consensus 64 ~~L~~L~L~~N~i~-~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~-~~l~~L~~L~L~~N-~i~~~~~~~~~-~l~ 136 (361)
T 2xot_A 64 TNLHSLLLSHNHLN-FI-SSEAFVPVPNLRYLDLSSNH-LHTLDE-FLF-SDLQALEVLLLYNN-HIVVVDRNAFE-DMA 136 (361)
T ss_dssp TTCCEEECCSSCCC-EE-CTTTTTTCTTCCEEECCSSC-CCEECT-TTT-TTCTTCCEEECCSS-CCCEECTTTTT-TCT
T ss_pred cccCEEECCCCcCC-cc-ChhhccCCCCCCEEECCCCc-CCcCCH-HHh-CCCcCCCEEECCCC-cccEECHHHhC-Ccc
Confidence 56777777766422 11 11236678888888888753 321100 011 12378888888887 45543222222 467
Q ss_pred CccEEEecCCCCCChHHHHHHH--hcCCCccEEEccCCCCCHHHHHHHHHhCCCC--ccEEEeCCCCC
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLA--NGCQAIQTLKLCRNAFSDEAIAAFLETAGEP--LKELSLNNVRK 616 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~--~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~--L~~L~L~~c~~ 616 (715)
+|+.|+|+++ .++......+. ..+++|+.|+|++|.+.......+... +. |+.|+|.+++-
T Consensus 137 ~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l--~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 137 QLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL--PAWVKNGLYLHNNPL 201 (361)
T ss_dssp TCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS--CHHHHTTEECCSSCE
T ss_pred cCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc--cHhhcceEEecCCCc
Confidence 8888888875 55442221110 346788888888887654322222211 22 46677777543
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.53 E-value=1.2e-05 Score=80.67 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=15.8
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~ 509 (715)
++|+.|+|++|.. ... ....+..+++|++|+|+++
T Consensus 64 ~~L~~L~L~~N~l-~~i-~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 64 INLKELYLGSNQL-GAL-PVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTCCEEECCSSCC-CCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCcEEECCCCCC-CCc-ChhhcccCCCcCEEECCCC
Confidence 4566666665542 111 0112344555555555543
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.48 E-value=1.3e-05 Score=80.11 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
++|+.|+|++| .++......+. .+++|+.|+|+++ .++..... ....+++|+.|+|++|.+
T Consensus 104 ~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 104 FSLQLLLLNAN-KINCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCC-CCCEeCHHHcC-CCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCCc
Confidence 45555555555 23322111111 2455666666553 33321111 112345566666665543
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.35 E-value=2e-05 Score=78.67 Aligned_cols=133 Identities=24% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEP 605 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~ 605 (715)
..++.|+|++| .++..........+++|+.|+|+++ .++...-. .+..+++|+.|+|++|.+.......+ ...++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG-AFEGASGVNEILLTSNRLENVQHKMF--KGLES 106 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGG--TTCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHH-HhCCCCCCCEEECCCCccCccCHhHh--cCCcC
Confidence 57899999998 4654321122235889999999985 56543222 23457899999999987754222112 12378
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 606 LKELSLNNVRKVADNTALSLAKRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 606 L~~L~L~~c~~I~d~~l~~L~~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
|++|+|+++. ++.... .....+++|+.|+|+++. ++...... +..+++|+.|+|++++
T Consensus 107 L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred CCEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECHHH-hcCCCCCCEEEecCcC
Confidence 9999998863 432110 112357889999998864 55332222 2468889999888754
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.99 E-value=0.0002 Score=81.89 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=114.7
Q ss_pred CCeeEEEEccCCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC------------CCHHHHHHHHhhCCCCCEEe-ecc
Q 005073 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACR------------ISDVGFKALVTSAPALRSIN-LSQ 455 (715)
Q Consensus 389 p~L~~L~L~~c~~~l~d~~~~~~l~~~~~~l~~L~~L~Ls~c~~------------lsd~~l~~L~~~~p~L~~L~-Ls~ 455 (715)
++|+.|+|+.+. + ..++..+..|++|+.|+++++.. .. ......+..+++|+.|+ ++.
T Consensus 349 ~~L~~L~Ls~n~-------L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 349 EQLFRCELSVEK-------S-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp TTSSSCCCCHHH-------H-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGH
T ss_pred ccceeccCChhh-------H-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhh
Confidence 566666665432 2 24555566677777777754310 01 01122334567777777 443
Q ss_pred CCCCChHH---H--HHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccE
Q 005073 456 CSLLSSTS---V--DILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKE 530 (715)
Q Consensus 456 c~~l~~~~---l--~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~ 530 (715)
+ .+.+-. + ..+...-...|+.|+|++|.. .. +. .+..+++|+.|+++++. ++ .+...+. .+++|+.
T Consensus 420 n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~--lp-~~~~l~~L~~L~Ls~N~-l~--~lp~~~~-~l~~L~~ 490 (567)
T 1dce_A 420 A-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TV--LC-HLEQLLLVTHLDLSHNR-LR--ALPPALA-ALRCLEV 490 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SS--CC-CGGGGTTCCEEECCSSC-CC--CCCGGGG-GCTTCCE
T ss_pred c-ccchhhhhhhhcccccccCccCceEEEecCCCC-CC--Cc-CccccccCcEeecCccc-cc--ccchhhh-cCCCCCE
Confidence 2 111100 0 011111124689999999853 33 22 37888999999998863 33 1111122 3389999
Q ss_pred EEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHH--HHHHHHHhCCCCccE
Q 005073 531 LILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDE--AIAAFLETAGEPLKE 608 (715)
Q Consensus 531 L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~--~l~~Ll~~~~~~L~~ 608 (715)
|+|++| .++.. ..+. .+++|+.|+|++| .++..........+++|+.|+|++|.++.. .+..+.. ..++|+.
T Consensus 491 L~Ls~N-~l~~l--p~l~-~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~-~lp~L~~ 564 (567)
T 1dce_A 491 LQASDN-ALENV--DGVA-NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE-MLPSVSS 564 (567)
T ss_dssp EECCSS-CCCCC--GGGT-TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH-HCTTCSE
T ss_pred EECCCC-CCCCC--cccC-CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH-HCcccCc
Confidence 999998 46653 2333 5899999999985 666542122334589999999999876542 1112222 2378888
Q ss_pred EEe
Q 005073 609 LSL 611 (715)
Q Consensus 609 L~L 611 (715)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 864
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00036 Score=68.02 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=49.9
Q ss_pred CCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 005073 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (715)
Q Consensus 473 ~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p 552 (715)
++|+.|+|+++.. .. +...+..+++|+.|+++++. ++...... + ...++|+.|+|++| .++......+. .++
T Consensus 31 ~~l~~L~L~~n~i-~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-f-~~l~~L~~L~Ls~N-~l~~i~~~~f~-~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TL--VPKELSNYKHLTLIDLSNNR-ISTLSNQS-F-SNMTQLLTLILSYN-RLRCIPPRTFD-GLK 102 (193)
T ss_dssp TTCCEEECCSSCC-CS--CCGGGGGCTTCCEEECCSSC-CCCCCTTT-T-TTCTTCCEEECCSS-CCCBCCTTTTT-TCT
T ss_pred CCCCEEECCCCcC-ch--hHHHhhcccCCCEEECCCCc-CCEeCHhH-c-cCCCCCCEEECCCC-ccCEeCHHHhC-CCC
Confidence 4455666655532 11 11345566666666666542 21100000 0 11256666666665 24432221222 356
Q ss_pred CccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 553 ~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
+|+.|+|+++ .++..... ....+++|+.|+|++|.+
T Consensus 103 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 103 SLRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCCe
Confidence 6667776663 44321111 122356667777766644
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.68 E-value=0.00027 Score=83.38 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=72.8
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhc
Q 005073 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKR 628 (715)
Q Consensus 549 ~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~ 628 (715)
..++.|+.|+|++| .+.... ..++ .+++|+.|+|++|.++. +..-+. ..++|+.|+|+++. |+ .+..-...
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~-~~~~-~l~~L~~L~Ls~N~l~~--lp~~~~-~l~~L~~L~Ls~N~-l~--~lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNIS-ANIF-KYDFLTRLYLNGNSLTE--LPAEIK-NLSNLRVLDLSHNR-LT--SLPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCC-GGGG-GCCSCSCCBCTTSCCSC--CCGGGG-GGTTCCEEECTTSC-CS--SCCSSGGG
T ss_pred ccCCCCcEEECCCC-CCCCCC-hhhc-CCCCCCEEEeeCCcCcc--cChhhh-CCCCCCEEeCcCCc-CC--ccChhhcC
Confidence 35789999999986 444211 1122 58999999999998762 211111 22799999999864 54 22222346
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcc
Q 005073 629 SNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNA 672 (715)
Q Consensus 629 ~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~ 672 (715)
+++|++|+|++|. |+. +..-+..+++|+.|+|+++. ++..
T Consensus 292 l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp GTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSC-CCSH
T ss_pred CCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCc-cCCC
Confidence 7899999999974 652 22223468999999999974 5543
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.62 E-value=0.00026 Score=68.80 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~i 590 (715)
++|+.|+|++| .++......+. .+++|+.|+|+++ .++..... ....+++|+.|+|++|.+
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKMFL-GLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSSST-TCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred ccCCEEECCCC-cCCccCHHHhc-CCCCCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence 55666666665 24332211111 2456666666653 44321111 112345666666666554
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.57 E-value=0.00023 Score=67.88 Aligned_cols=15 Identities=20% Similarity=0.052 Sum_probs=10.5
Q ss_pred hcCCCccEEEecCCC
Q 005073 627 KRSNKLVNLDLSWCR 641 (715)
Q Consensus 627 ~~~~~L~~LdLs~C~ 641 (715)
..+++|++|+|++++
T Consensus 121 ~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccCEEEecCCC
Confidence 346777888887765
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.55 E-value=0.00056 Score=65.18 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
++|+.|++++| .++......+ ..+++|+.|+++++ .++.... .+...+++|+.|+|++|.+.
T Consensus 76 ~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHEN-KLQSLPNGVF-DKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CccCEEECCCC-CccccCHHHh-hCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCCee
Confidence 56666666665 3432211111 23566777777664 4442111 12234566777777766553
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.55 E-value=0.00028 Score=83.15 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=30.1
Q ss_pred HhhCCCCCEEeeccCCCC--ChHHHHHHHHHhcCCceEEEecCCCCchhhhhHHHhhcCCCCCEEeecCc
Q 005073 442 VTSAPALRSINLSQCSLL--SSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (715)
Q Consensus 442 ~~~~p~L~~L~Ls~c~~l--~~~~l~~L~~~~~~~L~~L~Ls~c~~l~~~~l~~~L~~l~~Le~L~Ls~~ 509 (715)
+..++.|+.|+|++|... ... +. .+ ++|+.|+|++|.. . .+...+..+++|++|+|+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~----~~-~l-~~L~~L~Ls~N~l-~--~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN----IF-KY-DFLTRLYLNGNSL-T--ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG----GG-GC-CSCSCCBCTTSCC-S--CCCGGGGGGTTCCEEECTTS
T ss_pred hccCCCCcEEECCCCCCCCCChh----hc-CC-CCCCEEEeeCCcC-c--ccChhhhCCCCCCEEeCcCC
Confidence 345667777777776321 111 11 12 5666666666642 2 12334556666666666654
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.43 E-value=0.00017 Score=70.18 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=9.4
Q ss_pred cCCCccEEEecCCC
Q 005073 628 RSNKLVNLDLSWCR 641 (715)
Q Consensus 628 ~~~~L~~LdLs~C~ 641 (715)
.+++|++|+|++++
T Consensus 124 ~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 124 HLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECTTCC
T ss_pred cCCCCCEEEeCCCC
Confidence 35677777777754
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.36 E-value=0.00054 Score=66.77 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=9.5
Q ss_pred cCCCccEEEecCCC
Q 005073 628 RSNKLVNLDLSWCR 641 (715)
Q Consensus 628 ~~~~L~~LdLs~C~ 641 (715)
.+++|+.|+|++++
T Consensus 124 ~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 124 DLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCccccEEEeCCCC
Confidence 45677777777754
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.70 E-value=0.013 Score=60.19 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=19.4
Q ss_pred cCCCccEEEecCCCCCCh-HHHHHHHhcCCCccEEEccCCCCCH
Q 005073 550 TCPRLCTLDLSNLYKLTD-FGIGYLANGCQAIQTLKLCRNAFSD 592 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd-~gl~~l~~~~~~Lk~L~Ls~~~isd 592 (715)
.+|+|+.|+|+++ .++. .++..+...+++|+.|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 3455555555542 3332 1222233345556666665555543
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.03 E-value=0.024 Score=58.24 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=6.2
Q ss_pred cCCCCccEEEecC
Q 005073 417 NSLPSLTTLSICG 429 (715)
Q Consensus 417 ~~l~~L~~L~Ls~ 429 (715)
.++++|+.|+|++
T Consensus 167 ~~l~~L~~L~Ls~ 179 (267)
T 3rw6_A 167 ENIPELLSLNLSN 179 (267)
T ss_dssp HHCTTCCEEECTT
T ss_pred hhCCCCCEEECCC
Confidence 3344555555544
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.99 E-value=0.0035 Score=68.41 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=7.6
Q ss_pred cCCCccEEEccCC
Q 005073 576 GCQAIQTLKLCRN 588 (715)
Q Consensus 576 ~~~~Lk~L~Ls~~ 588 (715)
.|++|+.|.|.++
T Consensus 269 ~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 269 YCPELAEVTTYGS 281 (401)
T ss_dssp TCTTCCEEEEESS
T ss_pred CCCCCCEEEeCCc
Confidence 4566666666554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.82 E-value=0.0085 Score=56.83 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=7.1
Q ss_pred CCCccEEEecCC
Q 005073 629 SNKLVNLDLSWC 640 (715)
Q Consensus 629 ~~~L~~LdLs~C 640 (715)
+++|++|+|+++
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 456666666664
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.79 E-value=0.0087 Score=57.08 Aligned_cols=13 Identities=15% Similarity=-0.002 Sum_probs=7.7
Q ss_pred CCCccEEEecCCC
Q 005073 629 SNKLVNLDLSWCR 641 (715)
Q Consensus 629 ~~~L~~LdLs~C~ 641 (715)
+++|++|+|++++
T Consensus 104 l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 104 LKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCSEEECCSSC
T ss_pred ccCCCEEEeCCCC
Confidence 5566666666643
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.30 E-value=0.0064 Score=66.31 Aligned_cols=125 Identities=11% Similarity=0.262 Sum_probs=58.5
Q ss_pred hhcCCCCCEEeecC-ccccCHHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCC-----hH
Q 005073 495 LRKLKHLEVLSVAG-IETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLT-----DF 568 (715)
Q Consensus 495 L~~l~~Le~L~Ls~-~~~isd~~l~~ll~~~~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~lt-----d~ 568 (715)
+..+++|+.+.+.. ...+....+. . .+|+.+.|... ++...-.++ ..|++|+.|.+.+.. +. ..
T Consensus 222 F~~~~~L~~l~l~~~l~~I~~~aF~-----~-~~L~~i~lp~~--i~~I~~~aF-~~c~~L~~l~l~~~~-~~~~~~~~I 291 (401)
T 4fdw_A 222 FLKTSQLKTIEIPENVSTIGQEAFR-----E-SGITTVKLPNG--VTNIASRAF-YYCPELAEVTTYGST-FNDDPEAMI 291 (401)
T ss_dssp TTTCTTCCCEECCTTCCEECTTTTT-----T-CCCSEEEEETT--CCEECTTTT-TTCTTCCEEEEESSC-CCCCTTCEE
T ss_pred hhCCCCCCEEecCCCccCccccccc-----c-CCccEEEeCCC--ccEEChhHh-hCCCCCCEEEeCCcc-ccCCcccEE
Confidence 45566666666643 1122222111 1 46667766442 322111112 246777777776532 11 00
Q ss_pred HHHHHHhcCCCccEEEccCC--CCCHHHHHHHHHhCCCCccEEEeCCC-CCCCHHHHHHHHhcCCCccEEEecCC
Q 005073 569 GIGYLANGCQAIQTLKLCRN--AFSDEAIAAFLETAGEPLKELSLNNV-RKVADNTALSLAKRSNKLVNLDLSWC 640 (715)
Q Consensus 569 gl~~l~~~~~~Lk~L~Ls~~--~isd~~l~~Ll~~~~~~L~~L~L~~c-~~I~d~~l~~L~~~~~~L~~LdLs~C 640 (715)
+ ...+..|++|+.|.|..+ .+.+.++. .+.+|+.|.|... ..|... ...+| +|+.|.+.++
T Consensus 292 ~-~~aF~~c~~L~~l~l~~~i~~I~~~aF~-----~c~~L~~l~lp~~l~~I~~~----aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 292 H-PYCLEGCPKLARFEIPESIRILGQGLLG-----GNRKVTQLTIPANVTQINFS----AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp C-TTTTTTCTTCCEECCCTTCCEECTTTTT-----TCCSCCEEEECTTCCEECTT----SSSSS-CCCEEEECCS
T ss_pred C-HHHhhCCccCCeEEeCCceEEEhhhhhc-----CCCCccEEEECccccEEcHH----hCCCC-CCCEEEEcCC
Confidence 1 112345777777777642 12222221 2367777777542 112211 12356 8888888774
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.11 E-value=0.026 Score=53.67 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 551 ~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
+++|+.|+|+++ .++...- .....+++|+.|+|++|.+.
T Consensus 80 l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCCcc
Confidence 455666666553 3332111 11234567777777776553
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.31 E-value=0.037 Score=52.31 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCCEEeeccC
Q 005073 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (715)
Q Consensus 420 ~~L~~L~Ls~c~~lsd~~l~~L~~~~p~L~~L~Ls~c 456 (715)
++|+.|+|+++ .++.... ..+..+++|+.|+|+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCC
Confidence 45566666552 2222100 11233455555555554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.31 E-value=0.003 Score=68.36 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=15.4
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEe
Q 005073 628 RSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLF 664 (715)
Q Consensus 628 ~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~ 664 (715)
.|.+|+.++|... ++.-+-. .+.+|.+|+.+.|.
T Consensus 318 ~c~~L~~i~lp~~--v~~I~~~-aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 318 SCTSLVSIDLPYL--VEEIGKR-SFRGCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCCTT--CCEECTT-TTTTCTTCCEECCC
T ss_pred CCCCCCEEEeCCc--ccEEhHH-hccCCCCCCEEEEC
Confidence 4566666666431 2211111 12346666666554
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.64 E-value=0.042 Score=57.86 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 005073 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFS 591 (715)
Q Consensus 526 ~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~is 591 (715)
++|+.|+|++| .|+......+. .+++|+.|+|+++ .++...- .++..++ |+.|+|.+|.+.
T Consensus 56 ~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 56 GELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSFN-ALESLSW-KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCSS-CCSCCCS-TTTCSCC-CCEEECCSSCCC
T ss_pred cCCCEEECCCC-ccceeCHHHhc-CCcCCCEEeCCCC-ccceeCH-HHcccCC-ceEEEeeCCCcc
Confidence 55666666665 34432211222 3566666666653 3432110 1112222 666666666553
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=88.43 E-value=0.13 Score=53.90 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred EEecCCCCCChHHHHHHHhcCCCccEEEccC-CCCCHHHHHHHHHhCCCCccEEEeCCCCCCCHHHHHHHHhcCCCccEE
Q 005073 557 LDLSNLYKLTDFGIGYLANGCQAIQTLKLCR-NAFSDEAIAAFLETAGEPLKELSLNNVRKVADNTALSLAKRSNKLVNL 635 (715)
Q Consensus 557 L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~-~~isd~~l~~Ll~~~~~~L~~L~L~~c~~I~d~~l~~L~~~~~~L~~L 635 (715)
++.++.+.++. +.. ...+.+|+.|+|++ |.+....-..| ...++|+.|+|+++ .++... ......+++|++|
T Consensus 13 v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L 85 (347)
T 2ifg_A 13 LRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRL 85 (347)
T ss_dssp EECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEE
T ss_pred EEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHh--ccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEE
Confidence 45544324443 333 34567899999996 87754211111 12378999999986 454211 1123568999999
Q ss_pred EecCCCCCCHHHHHHHHhcCCCccEEEEecCC
Q 005073 636 DLSWCRNLSDEALGLIVDSCLSLRMLKLFGCS 667 (715)
Q Consensus 636 dLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~ 667 (715)
+|+++. |+... ..++..++ |+.|+|.++.
T Consensus 86 ~l~~N~-l~~~~-~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 86 NLSFNA-LESLS-WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp ECCSSC-CSCCC-STTTCSCC-CCEEECCSSC
T ss_pred eCCCCc-cceeC-HHHcccCC-ceEEEeeCCC
Confidence 999954 65221 11222333 9999998754
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.07 E-value=0.11 Score=55.83 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=27.9
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCcccccCCCCCCeeE
Q 005073 627 KRSNKLVNLDLSWCRNLSDEALGLIVDSCLSLRMLKLFGCSQITNAFLDGHSNPDVQI 684 (715)
Q Consensus 627 ~~~~~L~~LdLs~C~~Ltd~~l~~L~~~~~~L~~L~L~gC~~lt~~~l~~~~~~~L~~ 684 (715)
.+|.+|+.+.|... ++.-+-. .+.+|++|+.+.|... ++........|++|+.
T Consensus 340 ~~c~~L~~i~lp~~--l~~I~~~-aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 340 RGCTSLSNINFPLS--LRKIGAN-AFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTT-TBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred cCCCCCCEEEECcc--ccEehHH-HhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 35777888877542 3211111 2346888888888642 3333333334555544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=68.57 E-value=1.6 Score=46.54 Aligned_cols=100 Identities=15% Similarity=0.421 Sum_probs=44.8
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCC--CCCHHHHHHHHHhCCCCccEEEeCC-CCCCCHHHHHHHH
Q 005073 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN--AFSDEAIAAFLETAGEPLKELSLNN-VRKVADNTALSLA 626 (715)
Q Consensus 550 ~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~--~isd~~l~~Ll~~~~~~L~~L~L~~-c~~I~d~~l~~L~ 626 (715)
.|..|+.+.+.. .+...+-. .+..|+.|+.+.+... .+.+.++. .+.+|+.+.|.. ...|++.+ .
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~-aF~~c~~L~~i~l~~~i~~I~~~aF~-----~c~~L~~i~lp~~v~~I~~~a----F 330 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTG-AFMNCPALQDIEFSSRITELPESVFA-----GCISLKSIDIPEGITQILDDA----F 330 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTTCCEECTTTTT-----TCTTCCEEECCTTCCEECTTT----T
T ss_pred ecccccEEeccc--ccceecCc-ccccccccccccCCCcccccCceeec-----CCCCcCEEEeCCcccEehHhH----h
Confidence 355666666543 11111111 1224566666666432 22222211 235666666642 22333221 2
Q ss_pred hcCCCccEEEecCC-CCCCHHHHHHHHhcCCCccEEEEec
Q 005073 627 KRSNKLVNLDLSWC-RNLSDEALGLIVDSCLSLRMLKLFG 665 (715)
Q Consensus 627 ~~~~~L~~LdLs~C-~~Ltd~~l~~L~~~~~~L~~L~L~g 665 (715)
.+|.+|+.+.|... ..|.+. .+.+|.+|+.+.+.+
T Consensus 331 ~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 331 AGCEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESS
T ss_pred hCCCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECC
Confidence 34667777776431 223221 224567777776665
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=45.40 E-value=9.1 Score=40.59 Aligned_cols=37 Identities=5% Similarity=0.223 Sum_probs=17.8
Q ss_pred hhcCCCCCEEeecC-ccccCHHHHHHHHHhcCCCccEEEecCC
Q 005073 495 LRKLKHLEVLSVAG-IETVTDEFVRGFVYACGHNMKELILTDC 536 (715)
Q Consensus 495 L~~l~~Le~L~Ls~-~~~isd~~l~~ll~~~~~~L~~L~Ls~c 536 (715)
+..|.+|+.+.|.. ...+.+..+ ..+.+|+.+++.++
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~aF-----~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESAF-----SNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGGG-----TTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECcccCEEhHhHh-----hCCCCCCEEEECCc
Confidence 45566666666532 222332221 12256666666653
No 161
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=32.82 E-value=20 Score=21.74 Aligned_cols=14 Identities=50% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcc
Q 005073 209 RMEQFRDIARQNAS 222 (715)
Q Consensus 209 ~~~~~~~~a~~~~~ 222 (715)
-.|++|..|||+|-
T Consensus 4 ~te~lrr~arrnaw 17 (25)
T 3ech_C 4 YTEQLRRAARRNAW 17 (26)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhHH
Confidence 35899999999963
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=23.95 E-value=8.1 Score=40.57 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEEccCCCCCHHHHHHHHHhCCC
Q 005073 525 GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFSDEAIAAFLETAGE 604 (715)
Q Consensus 525 ~~~L~~L~Ls~c~~Ltd~~L~~L~~~~p~L~~L~Ls~c~~ltd~gl~~l~~~~~~Lk~L~Ls~~~isd~~l~~Ll~~~~~ 604 (715)
+.+|+.+.+.. .++...-..+.. |.+|+.+.+.. .+...+...+.. |.+|+.+.+..+.+..-+-.+|. .+.
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF~~-~~~l~~i~l~~--~i~~i~~~aF~~-c~~L~~i~l~~~~i~~I~~~aF~--~c~ 310 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLLQN-CTALKTLNFYA--KVKTVPYLLCSG-CSNLTKVVMDNSAIETLEPRVFM--DCV 310 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTTTT-CTTCCEEEECC--CCSEECTTTTTT-CTTCCEEEECCTTCCEECTTTTT--TCT
T ss_pred CccceEEEcCC--CccEeCccccce-eehhccccccc--cceecccccccc-ccccccccccccccceehhhhhc--CCC
Q ss_pred CccEEEe-CCCCCCCHHHHHHHHhcCCCccEEEe
Q 005073 605 PLKELSL-NNVRKVADNTALSLAKRSNKLVNLDL 637 (715)
Q Consensus 605 ~L~~L~L-~~c~~I~d~~l~~L~~~~~~L~~LdL 637 (715)
+|+.+.| .++..|++ ....+|.+|+.+.|
T Consensus 311 ~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTALKTIQV----YAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTTCCEECT----TTTTTCTTCCCCCC
T ss_pred CCCEEEcCccccEEHH----HHhhCCCCCCEEEE
No 163
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=21.65 E-value=1.5e+02 Score=20.64 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 005073 308 IPSLKELSMKILVQNADAITSLEHVPDALRHKLS 341 (715)
Q Consensus 308 ~psL~~LcL~~i~~n~~~l~~L~~lp~~~~~kL~ 341 (715)
+|+||.||-..|-.+++....--.+|..+...+.
T Consensus 1 v~sLQHLCR~~I~~~~~~~~~~LpLP~~Lk~yL~ 34 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHLDSYEKVTQLPGPIREFLD 34 (40)
T ss_pred CccHHHHHHHHHHHHcCCCcccCCCCHHHHHHHH
Confidence 5899999999998877544323356766655543
Done!