Query 005075
Match_columns 715
No_of_seqs 340 out of 814
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 4.7E-28 1.6E-32 226.0 13.3 114 114-227 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 8.9E-17 3E-21 153.0 10.8 98 118-225 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 7.7E-14 2.6E-18 124.8 10.0 95 118-223 7-101 (104)
4 1wmh_B Partitioning defective- 94.4 0.13 4.3E-06 45.3 8.0 65 617-685 6-70 (86)
5 1vd2_A Protein kinase C, IOTA 94.0 0.11 3.7E-06 45.8 6.7 58 618-678 7-64 (89)
6 1na6_A Ecorii, restriction end 93.5 0.12 4.3E-06 56.2 7.5 93 118-211 17-123 (404)
7 2ktr_A Sequestosome-1; autopha 85.5 1.4 4.6E-05 40.8 6.1 61 615-678 18-95 (117)
8 2kkc_A Sequestosome-1; P62, PB 84.6 1.5 5E-05 39.6 5.8 59 618-678 6-80 (102)
9 1q1o_A Cell division control p 84.0 1.3 4.5E-05 39.7 5.2 67 618-684 6-82 (98)
10 1oey_A P67-PHOX, neutrophil cy 78.9 5.9 0.0002 34.5 7.3 67 619-690 7-78 (83)
11 1pqs_A Cell division control p 71.0 3.2 0.00011 35.5 3.6 50 635-684 8-61 (77)
12 1oey_J P40-PHOX, neutrophil cy 63.8 12 0.00041 34.0 5.9 55 634-692 28-82 (107)
13 2bkf_A Zinc-finger protein NBR 61.5 21 0.00073 31.3 6.9 54 619-676 8-61 (87)
14 1wj6_A KIAA0049 protein, RSGI 57.5 23 0.00077 32.0 6.5 55 619-677 16-70 (101)
15 3p8d_A Medulloblastoma antigen 36.0 40 0.0014 28.2 4.4 41 326-381 3-43 (67)
16 3s6w_A Tudor domain-containing 35.5 31 0.0011 26.7 3.5 28 329-360 1-28 (54)
17 2jng_A Cullin-7, CUL-7; P53 bi 33.7 32 0.0011 31.2 3.6 68 318-399 10-77 (105)
18 1mhn_A SurviVal motor neuron p 31.3 40 0.0014 26.6 3.6 29 328-360 2-30 (59)
19 3o27_A Putative uncharacterize 30.2 50 0.0017 27.8 3.9 35 192-226 31-66 (68)
20 4a4f_A SurviVal of motor neuro 29.5 43 0.0015 27.0 3.5 30 327-360 6-35 (64)
21 3qii_A PHD finger protein 20; 25.3 72 0.0025 27.9 4.3 40 327-381 19-58 (85)
22 2equ_A PHD finger protein 20-l 24.2 59 0.002 27.4 3.5 40 327-381 7-46 (74)
23 1e8p_A Endoglucanase, dockerin 23.4 24 0.00081 27.7 0.8 13 662-674 20-32 (46)
24 1g5v_A SurviVal motor neuron p 21.7 72 0.0025 27.7 3.6 30 327-360 8-37 (88)
25 3h8z_A FragIle X mental retard 21.6 1E+02 0.0035 28.7 4.8 61 298-359 26-90 (128)
26 2k75_A Uncharacterized protein 21.2 2.2E+02 0.0076 24.9 6.8 48 159-226 39-90 (106)
27 2e63_A KIAA1787 protein; struc 20.8 56 0.0019 31.5 3.0 26 197-222 115-140 (170)
28 3m7a_A Uncharacterized protein 20.5 1.3E+02 0.0046 28.1 5.5 46 160-208 84-140 (140)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=4.7e-28 Score=225.97 Aligned_cols=114 Identities=30% Similarity=0.491 Sum_probs=103.7
Q ss_pred CCCCcceEEEEecccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchh
Q 005075 114 ETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWST 193 (715)
Q Consensus 114 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~ 193 (715)
...++..+|.|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34556789999999999999999999999999999999987667789999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEEecC--CcEEEEEEEeccCc
Q 005075 194 FVNHKKLVAGDSIVFLRAEN--GDLCVGIRRAKRGI 227 (715)
Q Consensus 194 FV~~K~L~aGD~VvF~R~~n--G~l~VGIRRa~~~~ 227 (715)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999874 57999999988744
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.68 E-value=8.9e-17 Score=152.96 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=86.3
Q ss_pred cceEEEEecccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhhcc
Q 005075 118 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNH 197 (715)
Q Consensus 118 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~ 197 (715)
...+|.|+||+||+.++..|.||+++++.|||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34699999999999987789999999999999753 46788888 6999999999974 79999999999999
Q ss_pred cCCCCCCEEEEEEecCC--cEEEEEEEecc
Q 005075 198 KKLVAGDSIVFLRAENG--DLCVGIRRAKR 225 (715)
Q Consensus 198 K~L~aGD~VvF~R~~nG--~l~VGIRRa~~ 225 (715)
++|++||.|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998865 68999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.49 E-value=7.7e-14 Score=124.78 Aligned_cols=95 Identities=23% Similarity=0.398 Sum_probs=82.0
Q ss_pred cceEEEEecccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhhcc
Q 005075 118 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNH 197 (715)
Q Consensus 118 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~ 197 (715)
....|.|+|+++|.. .+|.||+++++.+.+.+. ..+.++|..|++|.+++.+++ .+++|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 335899999999944 489999999988655432 468889999999999999874 578999999999999
Q ss_pred cCCCCCCEEEEEEecCCcEEEEEEEe
Q 005075 198 KKLVAGDSIVFLRAENGDLCVGIRRA 223 (715)
Q Consensus 198 K~L~aGD~VvF~R~~nG~l~VGIRRa 223 (715)
++|++||.++|...++..+.|-|-+.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999988774
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=94.44 E-value=0.13 Score=45.25 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=51.1
Q ss_pred cceEEEEecccceeeecccCCcCCHHHHHHHHHHhhCCCccccceeEEEeeCCCCeEecCCcchhhhcc
Q 005075 617 TGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLF 685 (715)
Q Consensus 617 ~~~vKV~meG~~vgR~vDLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~ 685 (715)
...||..-+++--==.+|-+...+|++|+..|+++|.+.. ....+.|.|.+||++-+-++ ++|..
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~--~~f~i~Y~D~dGDLlpInnD--dnl~~ 70 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG--LDVLLGYTDAHGDLLPLTND--DSLHR 70 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT--CCCEEEEECTTSCEEECCSH--HHHHH
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC--CCEEEEEECCCCCEeeecCH--HHHHH
Confidence 3567888888632225666778899999999999999743 44689999999999998877 66654
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.02 E-value=0.11 Score=45.81 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=44.2
Q ss_pred ceEEEEecccceeeecccCCcCCHHHHHHHHHHhhCCCccccceeEEEeeCCCCeEecCCc
Q 005075 618 GHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDE 678 (715)
Q Consensus 618 ~~vKV~meG~~vgR~vDLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D~eGd~mlvGD~ 678 (715)
.-+|++-+|.-+ .+.+..--+|++|+++|.++|.+.. .-..++-|.|.|||+.-+-..
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcccccCH
Confidence 578999999744 4444445699999999999999853 222589999999998776554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.50 E-value=0.12 Score=56.23 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=67.7
Q ss_pred cceEEEEecccccCCCC----CceeeccccccccCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCc
Q 005075 118 KPASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLDY-SADPPVQTILAK--DVHGETWKFRHIYRG------TPRR 184 (715)
Q Consensus 118 ~~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~yr~------~~rr 184 (715)
.-..|+|.|++.|++.. .++.+|+..+..+||.|+. ....|.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 34789999999999855 3799999889999999983 333456665543 444455599999997 4466
Q ss_pred eeeccCch-hhhcccCCCCCCEEEEEEe
Q 005075 185 HLLTTGWS-TFVNHKKLVAGDSIVFLRA 211 (715)
Q Consensus 185 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 211 (715)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88863 32 2344467789999999765
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=85.46 E-value=1.4 Score=40.77 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=43.9
Q ss_pred CccceEEEEecc-----cceeeecccC-----------CcCCHHHHHHHHHHhh-CCCccccceeEEEeeCCCCeEecCC
Q 005075 615 LETGHCKVFMES-----EDVGRTLDLS-----------LLGSYDELYKKLAEMF-GIENAETLSHLLYRDVTGAVKHIGD 677 (715)
Q Consensus 615 ~~~~~vKV~meG-----~~vgR~vDLs-----------~~~sY~eL~~~L~~MF-~~~~~~l~~~v~Y~D~eGd~mlvGD 677 (715)
.....||++..| ..| |.+-|. ...+|++|...+.++| .+.+ ..+.+.|+|.|||+.-+-.
T Consensus 18 ~~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~--~~f~l~YkDEdGDlItISs 94 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSS 94 (117)
T ss_dssp --CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECS
T ss_pred cccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecC
Confidence 345678999974 233 433332 2469999999999999 4543 2368999999999998877
Q ss_pred c
Q 005075 678 E 678 (715)
Q Consensus 678 ~ 678 (715)
+
T Consensus 95 D 95 (117)
T 2ktr_A 95 D 95 (117)
T ss_dssp H
T ss_pred H
Confidence 6
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=84.64 E-value=1.5 Score=39.56 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=42.3
Q ss_pred ceEEEEeccc----ceeeecccC-----------CcCCHHHHHHHHHHhhC-CCccccceeEEEeeCCCCeEecCCc
Q 005075 618 GHCKVFMESE----DVGRTLDLS-----------LLGSYDELYKKLAEMFG-IENAETLSHLLYRDVTGAVKHIGDE 678 (715)
Q Consensus 618 ~~vKV~meG~----~vgR~vDLs-----------~~~sY~eL~~~L~~MF~-~~~~~l~~~v~Y~D~eGd~mlvGD~ 678 (715)
..||++..|. .-=|.+-|. ...+|++|+..+.++|. +.+ -.+.+.|.|.|||+.-+.++
T Consensus 6 ~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH
T ss_pred EEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH
Confidence 4678888752 223444332 23589999999999996 332 23689999999999988876
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.04 E-value=1.3 Score=39.72 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=49.2
Q ss_pred ceEEEEeccc------ceeeecccCCcCCHHHHHHHHHHhhCCC-cccc--ceeEEEeeCCCCeEecCCc-chhhhc
Q 005075 618 GHCKVFMESE------DVGRTLDLSLLGSYDELYKKLAEMFGIE-NAET--LSHLLYRDVTGAVKHIGDE-PFRFQL 684 (715)
Q Consensus 618 ~~vKV~meG~------~vgR~vDLs~~~sY~eL~~~L~~MF~~~-~~~l--~~~v~Y~D~eGd~mlvGD~-Pw~~F~ 684 (715)
-.|||+-++. .=-|+|=...-=+|++|+.++.+-|++. ..+. ..++-|+|.|||+..+++. =|++-+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 5678887742 1237777778889999999999999874 2232 3579999999999988875 455433
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=78.86 E-value=5.9 Score=34.46 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=52.7
Q ss_pred eEEEEecccceeeecccCCcCCHHHHHHHHHHhhCCCccccceeEEEee-CCCCeEecCCcchhhhcc----ceEEE
Q 005075 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRD-VTGAVKHIGDEPFRFQLF----RLLAI 690 (715)
Q Consensus 619 ~vKV~meG~~vgR~vDLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D-~eGd~mlvGD~Pw~~F~~----krl~I 690 (715)
-|||+-+ +--.|....=-+|.+|.+.|.+-+.+..+. .+|-|+| .+|.+++.+|.=++.-.. -||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce--eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 3566666 677788888889999999999999996543 3788999 688888999998777665 45666
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=71.00 E-value=3.2 Score=35.50 Aligned_cols=50 Identities=12% Similarity=0.323 Sum_probs=36.0
Q ss_pred cCCcCCHHHHHHHHHHhhCCCcc-c--cceeEEEeeCCCCeEecCCc-chhhhc
Q 005075 635 LSLLGSYDELYKKLAEMFGIENA-E--TLSHLLYRDVTGAVKHIGDE-PFRFQL 684 (715)
Q Consensus 635 Ls~~~sY~eL~~~L~~MF~~~~~-~--l~~~v~Y~D~eGd~mlvGD~-Pw~~F~ 684 (715)
...-=+|++|+.++.+-|+.... + -..++-|+|.|||+..+++. =|.+-+
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~ 61 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 61 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 34455799999999999996411 1 22479999999999887764 455433
No 12
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=63.83 E-value=12 Score=33.95 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=41.1
Q ss_pred ccCCcCCHHHHHHHHHHhhCCCccccceeEEEeeCCCCeEecCCcchhhhccceEEEcc
Q 005075 634 DLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFS 692 (715)
Q Consensus 634 DLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~krl~I~~ 692 (715)
||+.--+|++|.....+-|.-+. -.+=|+|.|||+.-+=|.-=-.|+.++-++++
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D----IaLNYrD~eGDLIrilddeDv~lmi~~sr~~~ 82 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED----IALNYRDAEGDLVRLLSDEDVALMVRQARGLP 82 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS----EEEEEECTTSCEEECCSHHHHHHHHHHCCCCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc----eeeeeecCCCCEEEEcchHHHHHHHHHhhcCc
Confidence 78888899999999999999664 37889999999998876622233334444443
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=61.53 E-value=21 Score=31.35 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=42.2
Q ss_pred eEEEEecccceeeecccCCcCCHHHHHHHHHHhhCCCccccceeEEEeeCCCCeEecC
Q 005075 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIG 676 (715)
Q Consensus 619 ~vKV~meG~~vgR~vDLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D~eGd~mlvG 676 (715)
-.||.-.|+..==-|.-..--++++|...+..+|++.. ..|.|.|.|||-.-|-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~----~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS----EEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc----eEEEEEcCCCCEEEEe
Confidence 46888888743223544446789999999999999975 5999999999987664
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=57.54 E-value=23 Score=31.97 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=43.5
Q ss_pred eEEEEecccceeeecccCCcCCHHHHHHHHHHhhCCCccccceeEEEeeCCCCeEecCC
Q 005075 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGD 677 (715)
Q Consensus 619 ~vKV~meG~~vgR~vDLs~~~sY~eL~~~L~~MF~~~~~~l~~~v~Y~D~eGd~mlvGD 677 (715)
-.||.-.|+..==-|.-..--++++|...+..+|++.. ..|.|.|.|||-.-|=-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~----~~IkY~DEenD~V~i~S 70 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS 70 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS----BCCEEECTTSCEECCCS
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc----eEEEEecCCCCEEEEec
Confidence 46999999743323644446789999999999999975 48999999999887743
No 15
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=36.01 E-value=40 Score=28.16 Aligned_cols=41 Identities=7% Similarity=0.211 Sum_probs=32.0
Q ss_pred hhcCcccccEEEEEeeeCCCCceeeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005075 326 LQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (715)
Q Consensus 326 ~~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~~Dp~~wP~S~WR~LqV~WDe~ 381 (715)
|-..|.+|+++-.++ .|. +||-++|.+|... ....|.+++.
T Consensus 3 ~~~~~~vGd~vmArW--~D~---~yYpA~I~si~~~----------~~Y~V~F~dG 43 (67)
T 3p8d_A 3 MSSEFQINEQVLACW--SDC---RFYPAKVTAVNKD----------GTYTVKFYDG 43 (67)
T ss_dssp --CCCCTTCEEEEEC--TTS---CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred cCcccccCCEEEEEc--CCC---CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 456899999999999 342 6999999999742 4588999983
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=35.51 E-value=31 Score=26.70 Aligned_cols=28 Identities=7% Similarity=0.330 Sum_probs=22.2
Q ss_pred CcccccEEEEEeeeCCCCceeeeeeEEEEeec
Q 005075 329 RWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (715)
Q Consensus 329 ~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~ 360 (715)
.|.+|+..--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 5999999999995444 799999999863
No 17
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=33.72 E-value=32 Score=31.18 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.7
Q ss_pred ehHHHHHHhhcCcccccEEEEEeeeCCCCceeeeeeEEEEeecCCCCCCCCCCccceecccCcccccCCCCccccceeee
Q 005075 318 KASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 397 (715)
Q Consensus 318 ~~~~~~~a~~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~~Dp~~wP~S~WR~LqV~WDe~~~~~~~~RVSPWeIE~ 397 (715)
.++.|-.=++.+..||||+||.=.-|+-+.. =.|++. + +.|- -+ ..||.|..... .-.|+==.||+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~G--D~G~vl-~-s~~G-----l~--~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISAG--DEGEFR-Q-SNNG-----VP--PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCTT--CEEEEE-E-ECTT-----SS--EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhccC--CceeEE-e-cCCC-----Cc--cceeeehhcCc---eEEEEeehhhh
Confidence 4567888888899999999996433443322 257766 3 3232 22 89999987652 33333334555
Q ss_pred cc
Q 005075 398 VS 399 (715)
Q Consensus 398 v~ 399 (715)
+.
T Consensus 76 lg 77 (105)
T 2jng_A 76 LG 77 (105)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 18
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.31 E-value=40 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=23.6
Q ss_pred cCcccccEEEEEeeeCCCCceeeeeeEEEEeec
Q 005075 328 IRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (715)
Q Consensus 328 ~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~ 360 (715)
..|.+|+..-..|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG----CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS----CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 47999999999995333 699999999964
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=30.17 E-value=50 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=30.3
Q ss_pred hhhhcccCCCCCCEEEEEEec-CCcEEEEEEEeccC
Q 005075 192 STFVNHKKLVAGDSIVFLRAE-NGDLCVGIRRAKRG 226 (715)
Q Consensus 192 s~FV~~K~L~aGD~VvF~R~~-nG~l~VGIRRa~~~ 226 (715)
.++++.-+|+.||.+...-++ +|++.+..+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 589999999999999998875 88899999987653
No 20
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=29.54 E-value=43 Score=27.01 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=24.8
Q ss_pred hcCcccccEEEEEeeeCCCCceeeeeeEEEEeec
Q 005075 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (715)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~ 360 (715)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTTTS----SEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 468999999999995333 699999999974
No 21
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=25.27 E-value=72 Score=27.88 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=31.6
Q ss_pred hcCcccccEEEEEeeeCCCCceeeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005075 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (715)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~~Dp~~wP~S~WR~LqV~WDe~ 381 (715)
...|.+|+++--.+ + |. +||-++|.+|... ..+.|.+++.
T Consensus 19 ~~~f~vGd~VlArW-~-D~---~yYPAkI~sV~~~----------~~YtV~F~DG 58 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-DC---RFYPAKVTAVNKD----------GTYTVKFYDG 58 (85)
T ss_dssp --CCCTTCEEEEEC-T-TS---CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred CcccccCCEEEEEe-C-CC---CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 45899999999999 3 42 6999999999752 3589999983
No 22
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.24 E-value=59 Score=27.43 Aligned_cols=40 Identities=8% Similarity=0.240 Sum_probs=30.9
Q ss_pred hcCcccccEEEEEeeeCCCCceeeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005075 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (715)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~~Dp~~wP~S~WR~LqV~WDe~ 381 (715)
...|.+|+++.-.|. +. .||.+||.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg----~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC----RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS----SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC----CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 357999999999996 33 699999999963 1 3467887765
No 23
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=23.45 E-value=24 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.2
Q ss_pred eEEEeeCCCCeEe
Q 005075 662 HLLYRDVTGAVKH 674 (715)
Q Consensus 662 ~v~Y~D~eGd~ml 674 (715)
.|+|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4999999999954
No 24
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.71 E-value=72 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.2
Q ss_pred hcCcccccEEEEEeeeCCCCceeeeeeEEEEeec
Q 005075 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (715)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~ 360 (715)
...|.+|+.+.-.|. +|. .||.++|.++..
T Consensus 8 ~~~~kvGd~C~A~ys-~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWS-EDG---CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECT-TTC---CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEEC-CCC---CEEEEEEEEecC
Confidence 358999999999994 342 699999999964
No 25
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=21.58 E-value=1e+02 Score=28.66 Aligned_cols=61 Identities=7% Similarity=0.182 Sum_probs=40.1
Q ss_pred cCCcEEEEEecCCCCCceEEehHHHHH----HhhcCcccccEEEEEeeeCCCCceeeeeeEEEEee
Q 005075 298 NRQPFEVVYYPRASTPEFCVKASMVKA----ALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQ 359 (715)
Q Consensus 298 ~g~~F~V~Y~Pr~~~~EFvV~~~~~~~----a~~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~ 359 (715)
....++|.|.-- ..++-.|+.+.++- +....++.|+.+...-..+|.--..||.|+|..+.
T Consensus 26 ~~d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 26 HEDSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp CSSEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred eCCcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 345588999642 12477888776542 33467899999999887666444469999999996
No 26
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.25 E-value=2.2e+02 Score=24.85 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=35.1
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhhcccCCCCCCEEEEEEec----CCcEEEEEEEeccC
Q 005075 159 VQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAE----NGDLCVGIRRAKRG 226 (715)
Q Consensus 159 ~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~K~L~aGD~VvF~R~~----nG~l~VGIRRa~~~ 226 (715)
..++.+.|..| ..++..|+.. |.+||+|.+.... +|.+.+-+-|..+.
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I 90 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRI 90 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSEE
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEEE
Confidence 35788999999 5788888642 8899999987432 77777766655443
No 27
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.75 E-value=56 Score=31.50 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred ccCCCCCCEEEEEEecCCcEEEEEEE
Q 005075 197 HKKLVAGDSIVFLRAENGDLCVGIRR 222 (715)
Q Consensus 197 ~K~L~aGD~VvF~R~~nG~l~VGIRR 222 (715)
-..|.+||.|-|++..+|+|.+.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34578999999999999999998753
No 28
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=20.51 E-value=1.3e+02 Score=28.11 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCeEEEEEEE---------eCCCCceee--ccCchhhhcccCCCCCCEEEE
Q 005075 160 QTILAKDVHGETWKFRHIY---------RGTPRRHLL--TTGWSTFVNHKKLVAGDSIVF 208 (715)
Q Consensus 160 q~L~~~D~~G~~W~Fr~~y---------r~~~rr~lL--TtGWs~FV~~K~L~aGD~VvF 208 (715)
.++.+.|.+|++=....-- ...+-+|+| ..|| +.+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 6778888888877765421 112346887 5777 68889999999875
Done!