BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005076
         (715 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1
          Length = 1140

 Score = 34.7 bits (78), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 47/243 (19%)

Query: 398 VEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEI---DK---FLNDE 451
            + R+SI   + +  Q  I      L+++  ++ ++SE     KK I   DK   FL + 
Sbjct: 683 CQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQET 742

Query: 452 VDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQ 511
           VD  T+                ++  L+ SL+S               +EK+ A+++   
Sbjct: 743 VDEKTE----------------KIANLQESLLS---------------KEKVIAQLKVTV 771

Query: 512 QEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARL 571
            E   +   LQE  +T+    + I S ++++    K + D+   ++++     FKE  RL
Sbjct: 772 AEYETSLNQLQETLTTRD---REINSLRRQLDASHKELDDVGKSREIS-----FKENRRL 823

Query: 572 AAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVA--MARF 629
             +  +++ E   +  E+E AV E E+++  +   I  +   E L+++KEKE    + RF
Sbjct: 824 QDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRF 883

Query: 630 QRL 632
           Q L
Sbjct: 884 QML 886


>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sapiens GN=CEP135 PE=1 SV=2
          Length = 1140

 Score = 33.1 bits (74), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 515 SAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAE 574
           S   +S+ +L  T  N  + I S ++++    K + ++   +++A     FKE  RL  +
Sbjct: 772 SECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIA-----FKENRRLQDD 826

Query: 575 AKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVA--MARFQRL 632
             +++ E   +  E+E AV E E+++  +   I  +   E L+++KEKE    + RFQ L
Sbjct: 827 LATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQML 886


>sp|Q64Q86|RNY_BACFR Ribonuclease Y OS=Bacteroides fragilis (strain YCH46) GN=rny PE=3
           SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 13/111 (11%)

Query: 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS---IVVSDFQEYQSSINAKYDS 422
           KK+ L    +K L    D EKE+A  +  I+  E ++    +V+S  QE      A+ D+
Sbjct: 46  KKNKLLEVKEKFLNKKADLEKEVALRNQKIQQAENKLKQREMVLSQRQEEIQRKRAEADA 105

Query: 423 LQSIISQLNLESE--AMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471
           ++      NLE++   +  KK+E+DK  + E++   KL+ L+ +SADEAKE
Sbjct: 106 VRE-----NLEAQLGIVDKKKEELDKLQHQEIE---KLEALSGLSADEAKE 148


>sp|Q5L9Y0|RNY_BACFN Ribonuclease Y OS=Bacteroides fragilis (strain ATCC 25285 / NCTC
           9343) GN=rny PE=3 SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 13/111 (11%)

Query: 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS---IVVSDFQEYQSSINAKYDS 422
           KK+ L    +K L    D EKE+A  +  I+  E ++    +V+S  QE      A+ D+
Sbjct: 46  KKNKLLEVKEKFLNKKADLEKEVALRNQKIQQAENKLKQREMVLSQRQEEIQRKRAEADA 105

Query: 423 LQSIISQLNLESE--AMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471
           ++      NLE++   +  KK+E+DK  + E++   KL+ L+ +SADEAKE
Sbjct: 106 VRE-----NLEAQLGIVDKKKEELDKLQHQEIE---KLEALSGLSADEAKE 148


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.123    0.315 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,008,627
Number of Sequences: 539616
Number of extensions: 8981354
Number of successful extensions: 62808
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 3036
Number of HSP's that attempted gapping in prelim test: 52904
Number of HSP's gapped (non-prelim): 8514
length of query: 715
length of database: 191,569,459
effective HSP length: 125
effective length of query: 590
effective length of database: 124,117,459
effective search space: 73229300810
effective search space used: 73229300810
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)