Query 005076
Match_columns 715
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 17:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 98.4 0.007 1.5E-07 68.4 50.0 204 232-452 243-446 (880)
2 TIGR00606 rad50 rad50. This fa 97.9 0.14 3.1E-06 61.6 40.9 161 366-556 882-1044(1311)
3 TIGR02168 SMC_prok_B chromosom 97.6 0.12 2.7E-06 58.4 31.4 9 286-294 193-201 (1179)
4 TIGR02169 SMC_prok_A chromosom 97.6 0.21 4.5E-06 57.1 33.6 37 507-543 394-430 (1164)
5 TIGR00606 rad50 rad50. This fa 97.5 0.47 1E-05 57.4 47.5 135 496-639 972-1113(1311)
6 TIGR02169 SMC_prok_A chromosom 97.4 0.14 3.1E-06 58.4 27.7 32 372-403 674-705 (1164)
7 COG1196 Smc Chromosome segrega 97.3 0.38 8.2E-06 57.5 31.5 231 368-614 249-487 (1163)
8 PRK02224 chromosome segregatio 96.9 1.1 2.5E-05 51.1 50.2 38 235-272 260-297 (880)
9 PRK11637 AmiB activator; Provi 96.8 0.33 7.3E-06 51.7 22.8 86 464-549 164-249 (428)
10 COG1196 Smc Chromosome segrega 96.6 2.5 5.4E-05 50.9 31.1 105 365-480 807-911 (1163)
11 PRK03918 chromosome segregatio 96.5 2.4 5.1E-05 48.3 48.9 86 525-612 618-705 (880)
12 PF12128 DUF3584: Protein of u 96.1 5.3 0.00011 48.5 33.1 296 309-617 223-534 (1201)
13 PRK11637 AmiB activator; Provi 95.6 1.7 3.7E-05 46.5 20.2 80 472-554 161-240 (428)
14 PHA02562 46 endonuclease subun 95.6 3.4 7.4E-05 44.6 22.4 12 699-710 472-483 (562)
15 PF07888 CALCOCO1: Calcium bin 95.5 6 0.00013 45.3 33.2 55 237-291 161-215 (546)
16 KOG0161 Myosin class II heavy 95.3 13 0.00029 47.9 48.3 437 165-622 1298-1800(1930)
17 PF05701 WEMBL: Weak chloropla 95.0 7.7 0.00017 43.3 41.0 151 214-377 27-184 (522)
18 KOG1924 RhoA GTPase effector D 94.7 0.13 2.7E-06 60.5 9.3 12 11-22 510-521 (1102)
19 PHA02562 46 endonuclease subun 94.4 8.9 0.00019 41.5 21.8 38 504-541 336-373 (562)
20 PRK04778 septation ring format 94.2 12 0.00026 42.1 37.2 109 500-619 399-508 (569)
21 PF02151 UVR: UvrB/uvrC motif; 93.9 0.098 2.1E-06 39.2 4.1 33 216-248 4-36 (36)
22 PF00261 Tropomyosin: Tropomyo 93.5 9.2 0.0002 38.3 22.4 177 417-612 56-236 (237)
23 KOG0250 DNA repair protein RAD 93.4 11 0.00023 46.2 21.5 144 456-617 284-431 (1074)
24 PF00038 Filament: Intermediat 93.2 11 0.00023 38.3 26.3 106 503-633 200-306 (312)
25 KOG1924 RhoA GTPase effector D 93.0 0.23 4.9E-06 58.5 7.2 16 252-267 747-762 (1102)
26 PRK03918 chromosome segregatio 92.9 21 0.00046 40.9 48.7 12 177-188 174-185 (880)
27 PF00261 Tropomyosin: Tropomyo 91.0 19 0.00041 36.2 20.1 153 176-348 5-163 (237)
28 TIGR02680 conserved hypothetic 89.1 61 0.0013 40.5 22.4 90 374-463 744-835 (1353)
29 PF12128 DUF3584: Protein of u 88.6 70 0.0015 39.4 44.0 45 236-280 355-399 (1201)
30 PF00038 Filament: Intermediat 87.3 36 0.00078 34.6 24.1 70 369-438 8-81 (312)
31 COG0419 SbcC ATPase involved i 87.3 71 0.0015 37.9 39.0 40 367-406 554-599 (908)
32 PF08317 Spc7: Spc7 kinetochor 87.1 36 0.00079 35.8 16.6 142 457-621 123-264 (325)
33 PF09726 Macoilin: Transmembra 86.9 40 0.00087 39.7 18.2 76 496-573 451-526 (697)
34 PF06160 EzrA: Septation ring 86.8 62 0.0013 36.7 41.6 415 177-619 42-504 (560)
35 COG4942 Membrane-bound metallo 86.4 63 0.0014 36.4 20.4 120 365-490 38-170 (420)
36 COG0419 SbcC ATPase involved i 86.0 82 0.0018 37.4 50.9 21 180-200 233-253 (908)
37 PRK01156 chromosome segregatio 85.8 78 0.0017 37.0 33.6 29 515-543 412-440 (895)
38 PF05701 WEMBL: Weak chloropla 85.6 68 0.0015 36.1 41.5 27 200-226 55-81 (522)
39 KOG0612 Rho-associated, coiled 85.4 1.2E+02 0.0025 38.5 21.4 156 352-519 516-688 (1317)
40 KOG0977 Nuclear envelope prote 84.8 84 0.0018 36.5 19.8 109 372-492 141-257 (546)
41 PRK09039 hypothetical protein; 84.3 58 0.0012 35.0 16.6 18 504-521 136-153 (343)
42 smart00787 Spc7 Spc7 kinetocho 83.6 18 0.00039 38.5 12.5 176 466-694 127-303 (312)
43 PF04949 Transcrip_act: Transc 83.4 19 0.00041 35.9 11.6 123 302-442 21-150 (159)
44 PRK04863 mukB cell division pr 81.7 1.7E+02 0.0037 37.6 23.4 216 398-644 209-426 (1486)
45 PF13514 AAA_27: AAA domain 79.0 1.6E+02 0.0035 35.8 45.3 115 230-351 526-647 (1111)
46 TIGR03185 DNA_S_dndD DNA sulfu 78.8 1.3E+02 0.0028 34.5 27.2 30 516-545 388-417 (650)
47 KOG0161 Myosin class II heavy 76.7 2.6E+02 0.0057 37.0 49.1 419 234-679 1190-1641(1930)
48 TIGR01000 bacteriocin_acc bact 76.2 1.2E+02 0.0027 33.0 16.8 24 588-611 292-315 (457)
49 PF09789 DUF2353: Uncharacteri 75.1 48 0.0011 36.0 12.5 112 580-709 126-260 (319)
50 PRK08475 F0F1 ATP synthase sub 74.5 51 0.0011 31.8 11.5 93 234-341 54-146 (167)
51 smart00502 BBC B-Box C-termina 73.5 57 0.0012 27.8 13.5 121 501-632 3-124 (127)
52 smart00787 Spc7 Spc7 kinetocho 73.0 89 0.0019 33.5 13.8 159 306-481 126-285 (312)
53 KOG0994 Extracellular matrix g 72.2 3E+02 0.0064 35.5 26.7 80 383-462 1419-1498(1758)
54 PRK15319 AIDA autotransporter- 72.1 3.9 8.4E-05 52.2 4.2 8 103-110 1766-1773(2039)
55 TIGR03321 alt_F1F0_F0_B altern 71.6 1.2E+02 0.0026 30.8 15.4 106 233-353 36-141 (246)
56 PF05557 MAD: Mitotic checkpoi 70.6 19 0.00042 41.4 9.0 29 654-682 607-636 (722)
57 COG1579 Zn-ribbon protein, pos 70.5 1E+02 0.0022 32.4 13.2 58 348-405 28-85 (239)
58 PRK09039 hypothetical protein; 70.4 63 0.0014 34.7 12.1 36 578-613 142-177 (343)
59 TIGR03185 DNA_S_dndD DNA sulfu 70.3 2.1E+02 0.0045 32.9 29.4 14 269-282 300-313 (650)
60 TIGR02231 conserved hypothetic 69.3 14 0.00031 40.6 7.3 106 502-615 68-173 (525)
61 PF12072 DUF3552: Domain of un 68.4 1.3E+02 0.0028 29.8 13.4 93 376-471 61-153 (201)
62 COG3264 Small-conductance mech 66.9 70 0.0015 38.8 12.5 115 426-570 137-251 (835)
63 KOG0996 Structural maintenance 66.3 3.7E+02 0.0081 34.4 32.1 146 345-532 459-604 (1293)
64 PF01576 Myosin_tail_1: Myosin 65.8 2 4.3E-05 50.6 0.0 206 169-382 149-366 (859)
65 PRK12704 phosphodiesterase; Pr 61.7 2.4E+02 0.0051 32.3 14.9 59 410-471 99-157 (520)
66 KOG0612 Rho-associated, coiled 60.5 4.7E+02 0.01 33.6 23.4 48 570-617 701-751 (1317)
67 PF12329 TMF_DNA_bd: TATA elem 60.4 28 0.0006 30.2 5.9 49 495-543 23-71 (74)
68 TIGR01843 type_I_hlyD type I s 59.8 2.2E+02 0.0047 29.5 17.3 35 583-618 249-283 (423)
69 KOG0996 Structural maintenance 59.2 4.9E+02 0.011 33.4 29.7 124 414-544 401-532 (1293)
70 PF04156 IncA: IncA protein; 58.7 1.7E+02 0.0037 27.9 12.4 31 419-449 82-112 (191)
71 KOG2391 Vacuolar sorting prote 58.6 3.1E+02 0.0066 30.8 16.2 35 284-318 302-337 (365)
72 PF05667 DUF812: Protein of un 58.3 3.6E+02 0.0079 31.6 21.8 205 385-613 327-531 (594)
73 KOG0250 DNA repair protein RAD 58.2 4.8E+02 0.01 33.0 24.2 66 503-568 406-480 (1074)
74 PRK10884 SH3 domain-containing 57.4 84 0.0018 31.9 9.6 36 503-541 98-133 (206)
75 PF09325 Vps5: Vps5 C terminal 57.3 1.9E+02 0.0041 28.0 15.2 30 581-610 171-200 (236)
76 KOG0979 Structural maintenance 55.9 2.5E+02 0.0054 35.2 14.5 30 507-543 422-451 (1072)
77 PRK04778 septation ring format 55.7 3.6E+02 0.0078 30.7 30.5 114 214-337 79-207 (569)
78 TIGR01005 eps_transp_fam exopo 55.5 3.9E+02 0.0084 31.0 16.9 108 333-450 161-269 (754)
79 PF04012 PspA_IM30: PspA/IM30 55.4 2.1E+02 0.0046 28.0 14.7 139 474-631 5-144 (221)
80 PF05911 DUF869: Plant protein 55.2 4.6E+02 0.01 31.8 23.0 88 481-568 655-745 (769)
81 PF03148 Tektin: Tektin family 54.4 1.6E+02 0.0035 32.0 11.7 46 501-547 327-372 (384)
82 PHA03247 large tegument protei 54.3 47 0.001 44.7 8.7 17 106-122 2726-2742(3151)
83 PRK05759 F0F1 ATP synthase sub 54.1 1.8E+02 0.004 26.9 13.8 109 244-353 32-140 (156)
84 PRK14472 F0F1 ATP synthase sub 54.1 2.1E+02 0.0045 27.5 13.6 105 234-353 50-154 (175)
85 cd07666 BAR_SNX7 The Bin/Amphi 53.7 2.9E+02 0.0062 29.0 19.3 43 440-485 200-243 (243)
86 COG3074 Uncharacterized protei 52.7 44 0.00095 30.1 5.9 51 492-542 18-69 (79)
87 PRK13461 F0F1 ATP synthase sub 52.7 2.1E+02 0.0045 27.0 13.6 106 234-354 37-142 (159)
88 cd07632 BAR_APPL2 The Bin/Amph 52.0 1.4E+02 0.003 31.3 10.2 108 336-450 83-209 (215)
89 PRK00106 hypothetical protein; 51.7 4.3E+02 0.0093 30.7 15.0 53 416-471 120-172 (535)
90 PF09726 Macoilin: Transmembra 51.5 1.8E+02 0.0038 34.6 12.2 138 502-681 422-567 (697)
91 PF07200 Mod_r: Modifier of ru 51.5 96 0.0021 28.8 8.3 23 416-438 94-116 (150)
92 PF06248 Zw10: Centromere/kine 51.3 2E+02 0.0044 32.5 12.3 78 530-616 18-105 (593)
93 PF07106 TBPIP: Tat binding pr 49.9 50 0.0011 31.4 6.4 124 508-633 24-158 (169)
94 CHL00019 atpF ATP synthase CF0 48.9 2.6E+02 0.0057 27.1 13.9 106 233-353 55-160 (184)
95 PF00435 Spectrin: Spectrin re 48.7 98 0.0021 24.8 7.1 61 372-432 34-94 (105)
96 PRK14471 F0F1 ATP synthase sub 48.5 2.4E+02 0.0053 26.7 13.2 106 233-353 39-144 (164)
97 PF00015 MCPsignal: Methyl-acc 48.0 2.4E+02 0.0051 26.3 11.4 153 343-539 59-211 (213)
98 PF08317 Spc7: Spc7 kinetochor 47.9 3.7E+02 0.008 28.5 14.5 130 306-449 131-261 (325)
99 PF15619 Lebercilin: Ciliary p 46.9 3.2E+02 0.007 27.6 17.3 168 373-547 16-192 (194)
100 COG1730 GIM5 Predicted prefold 46.9 1.2E+02 0.0027 29.6 8.6 39 501-539 9-47 (145)
101 PF09730 BicD: Microtubule-ass 46.8 4.1E+02 0.0089 32.1 14.2 133 503-648 284-447 (717)
102 COG1842 PspA Phage shock prote 46.4 3.4E+02 0.0073 28.1 12.0 125 478-615 10-134 (225)
103 PF06160 EzrA: Septation ring 46.0 5.1E+02 0.011 29.7 33.9 133 396-543 347-489 (560)
104 KOG0018 Structural maintenance 45.9 7.5E+02 0.016 31.6 21.5 104 355-459 250-359 (1141)
105 PF04156 IncA: IncA protein; 45.7 2.8E+02 0.006 26.5 10.8 24 437-460 125-148 (191)
106 PF01576 Myosin_tail_1: Myosin 45.3 7 0.00015 46.2 0.0 329 300-645 372-704 (859)
107 PF12718 Tropomyosin_1: Tropom 45.3 2.9E+02 0.0062 26.6 14.4 110 506-624 8-117 (143)
108 PRK12705 hypothetical protein; 45.3 1.4E+02 0.0031 34.3 10.0 87 375-471 59-145 (508)
109 KOG0962 DNA repair protein RAD 45.1 8.1E+02 0.018 31.7 28.2 155 340-499 806-966 (1294)
110 PF15070 GOLGA2L5: Putative go 44.6 6E+02 0.013 30.0 19.8 34 585-618 412-445 (617)
111 PRK14474 F0F1 ATP synthase sub 43.8 3.9E+02 0.0084 27.7 13.8 106 233-353 36-141 (250)
112 KOG4657 Uncharacterized conser 43.0 1.4E+02 0.003 31.9 8.7 82 472-556 35-116 (246)
113 PRK07352 F0F1 ATP synthase sub 42.4 3.2E+02 0.0069 26.3 13.5 105 234-353 51-155 (174)
114 PRK13453 F0F1 ATP synthase sub 42.1 3.3E+02 0.0071 26.3 13.6 106 234-354 50-155 (173)
115 KOG4603 TBP-1 interacting prot 42.1 1.7E+02 0.0036 30.3 8.9 91 503-611 91-183 (201)
116 PRK06568 F0F1 ATP synthase sub 41.9 2E+02 0.0044 28.2 9.2 40 233-272 35-74 (154)
117 PRK09591 celC cellobiose phosp 41.2 83 0.0018 29.0 6.1 48 626-674 8-58 (104)
118 TIGR03319 YmdA_YtgF conserved 40.5 6.2E+02 0.013 29.0 14.9 56 416-471 92-151 (514)
119 PRK15422 septal ring assembly 39.9 90 0.002 28.3 6.0 52 492-543 18-70 (79)
120 PRK10454 PTS system N,N'-diace 39.6 81 0.0018 29.8 5.9 54 624-678 17-73 (115)
121 PRK10698 phage shock protein P 39.1 4.4E+02 0.0095 26.9 14.3 34 495-528 110-143 (222)
122 cd07667 BAR_SNX30 The Bin/Amph 38.6 5E+02 0.011 27.4 19.9 174 233-483 58-238 (240)
123 KOG0018 Structural maintenance 38.5 9.6E+02 0.021 30.7 19.5 229 355-632 649-894 (1141)
124 cd00215 PTS_IIA_lac PTS_IIA, P 38.4 79 0.0017 28.8 5.5 52 628-680 5-59 (97)
125 TIGR00823 EIIA-LAC phosphotran 37.3 96 0.0021 28.3 5.9 52 626-678 5-59 (99)
126 PRK13460 F0F1 ATP synthase sub 37.2 3.9E+02 0.0084 25.7 13.6 106 234-354 48-153 (173)
127 PF05010 TACC: Transforming ac 36.0 5.1E+02 0.011 26.8 17.0 92 310-412 21-112 (207)
128 PF11932 DUF3450: Protein of u 35.8 1.3E+02 0.0028 30.4 7.2 65 362-426 53-117 (251)
129 PF10146 zf-C4H2: Zinc finger- 34.7 3.4E+02 0.0074 28.2 10.0 41 348-388 29-69 (230)
130 PRK03947 prefoldin subunit alp 34.6 2.1E+02 0.0045 26.4 7.7 32 504-535 12-43 (140)
131 PF02403 Seryl_tRNA_N: Seryl-t 33.6 1.8E+02 0.0039 25.6 6.9 38 503-540 27-64 (108)
132 COG1579 Zn-ribbon protein, pos 33.5 6E+02 0.013 26.9 12.9 117 312-443 45-167 (239)
133 PF13514 AAA_27: AAA domain 32.6 1E+03 0.022 29.3 48.6 168 440-608 637-836 (1111)
134 COG1842 PspA Phage shock prote 32.3 5.9E+02 0.013 26.4 14.9 61 502-562 89-149 (225)
135 PRK00558 uvrC excinuclease ABC 31.4 54 0.0012 37.8 4.1 34 217-250 205-238 (598)
136 PRK15178 Vi polysaccharide exp 31.3 7.3E+02 0.016 28.4 12.5 120 512-647 242-371 (434)
137 PF05266 DUF724: Protein of un 31.3 5.7E+02 0.012 25.9 11.0 31 297-327 54-84 (190)
138 PF07798 DUF1640: Protein of u 31.2 5E+02 0.011 25.3 10.5 24 327-350 45-68 (177)
139 COG3883 Uncharacterized protei 30.8 7.1E+02 0.015 26.9 17.1 88 469-559 136-223 (265)
140 PF09457 RBD-FIP: FIP domain ; 30.4 96 0.0021 25.6 4.3 42 375-416 3-44 (48)
141 COG3599 DivIVA Cell division i 30.2 6.4E+02 0.014 26.1 13.2 33 603-640 115-147 (212)
142 TIGR02231 conserved hypothetic 29.7 4.1E+02 0.0088 29.7 10.3 20 584-603 149-168 (525)
143 PF07989 Microtub_assoc: Micro 29.6 1.4E+02 0.003 26.2 5.4 74 520-604 1-74 (75)
144 COG5178 PRP8 U5 snRNP spliceos 29.5 35 0.00075 43.0 2.3 25 79-122 9-33 (2365)
145 TIGR02338 gimC_beta prefoldin, 28.4 4.5E+02 0.0097 23.8 8.8 96 502-615 7-102 (110)
146 PRK13428 F0F1 ATP synthase sub 28.3 8.8E+02 0.019 27.2 13.8 205 234-498 33-238 (445)
147 PF04111 APG6: Autophagy prote 27.9 3.5E+02 0.0075 29.0 9.0 16 310-325 21-36 (314)
148 PF05278 PEARLI-4: Arabidopsis 27.6 7.2E+02 0.016 26.9 11.2 47 357-403 192-238 (269)
149 TIGR00634 recN DNA repair prot 27.5 9.5E+02 0.021 27.3 18.1 49 503-551 159-207 (563)
150 KOG4825 Component of synaptic 27.4 1.6E+02 0.0035 34.3 6.8 96 175-272 170-267 (666)
151 KOG0559 Dihydrolipoamide succi 27.3 89 0.0019 35.3 4.7 28 79-106 213-241 (457)
152 KOG0946 ER-Golgi vesicle-tethe 27.3 1.3E+03 0.029 28.9 21.6 201 344-555 626-877 (970)
153 PF15619 Lebercilin: Ciliary p 27.3 6.7E+02 0.014 25.4 17.2 139 443-614 48-191 (194)
154 PF04011 LemA: LemA family; I 25.9 6.2E+02 0.013 24.6 11.0 67 499-569 63-145 (186)
155 PF10473 CENP-F_leu_zip: Leuci 25.4 6.5E+02 0.014 24.7 9.6 43 570-612 70-112 (140)
156 TIGR00293 prefoldin, archaeal 25.4 3.4E+02 0.0073 24.5 7.3 28 586-613 92-119 (126)
157 KOG1830 Wiskott Aldrich syndro 25.0 1.2E+03 0.025 27.4 12.9 169 16-207 320-500 (518)
158 PRK14473 F0F1 ATP synthase sub 24.7 6.1E+02 0.013 24.0 13.6 108 233-355 39-146 (164)
159 PF02255 PTS_IIA: PTS system, 24.6 1.5E+02 0.0033 26.8 5.0 50 631-680 6-58 (96)
160 PF07795 DUF1635: Protein of u 24.6 2.4E+02 0.0052 29.5 6.9 54 583-636 4-63 (214)
161 PRK12306 uvrC excinuclease ABC 24.4 84 0.0018 35.9 4.0 31 217-247 195-225 (519)
162 TIGR01000 bacteriocin_acc bact 24.4 9.7E+02 0.021 26.3 18.6 27 500-526 238-264 (457)
163 cd07666 BAR_SNX7 The Bin/Amphi 24.2 8.6E+02 0.019 25.6 12.4 174 480-693 40-223 (243)
164 PRK03598 putative efflux pump 24.1 8.1E+02 0.018 25.3 12.9 65 583-649 110-174 (331)
165 PF14662 CCDC155: Coiled-coil 24.1 8.3E+02 0.018 25.4 12.6 88 530-624 64-153 (193)
166 KOG0978 E3 ubiquitin ligase in 24.1 1.4E+03 0.03 28.0 34.9 351 173-567 259-642 (698)
167 KOG2685 Cystoskeletal protein 24.0 1.4E+02 0.003 33.9 5.5 70 468-547 330-399 (421)
168 PRK07353 F0F1 ATP synthase sub 23.7 5.7E+02 0.012 23.4 9.8 76 233-322 36-111 (140)
169 PF05010 TACC: Transforming ac 23.6 8.3E+02 0.018 25.3 18.6 100 487-618 100-203 (207)
170 PF02151 UVR: UvrB/uvrC motif; 23.5 47 0.001 25.0 1.3 33 547-579 2-34 (36)
171 PF13838 Clathrin_H_link: Clat 23.4 51 0.0011 28.6 1.6 16 561-576 18-33 (66)
172 TIGR03007 pepcterm_ChnLen poly 23.3 1E+03 0.022 26.1 17.4 50 339-388 134-184 (498)
173 PRK07883 hypothetical protein; 23.1 93 0.002 35.5 4.1 34 216-249 408-441 (557)
174 smart00150 SPEC Spectrin repea 23.0 3.9E+02 0.0085 21.3 6.6 11 312-322 8-18 (101)
175 PF03148 Tektin: Tektin family 23.0 1E+03 0.022 26.1 28.9 309 285-611 19-369 (384)
176 PF05852 DUF848: Gammaherpesvi 23.0 5.2E+02 0.011 25.7 8.5 80 506-611 32-113 (146)
177 PF13805 Pil1: Eisosome compon 22.8 8.9E+02 0.019 26.2 10.8 48 612-665 203-258 (271)
178 PF10186 Atg14: UV radiation r 22.7 7.6E+02 0.017 24.5 12.8 22 386-407 63-84 (302)
179 cd07614 BAR_Endophilin_A2 The 21.6 6.5E+02 0.014 26.2 9.3 75 457-536 118-192 (223)
180 KOG0239 Kinesin (KAR3 subfamil 21.1 1.5E+03 0.032 27.2 17.7 19 601-619 300-318 (670)
181 PF05278 PEARLI-4: Arabidopsis 21.0 1.1E+03 0.024 25.7 12.5 40 504-543 220-259 (269)
182 PRK14666 uvrC excinuclease ABC 20.8 1.1E+02 0.0023 36.6 4.1 34 217-250 204-237 (694)
183 PRK14668 uvrC excinuclease ABC 20.7 1.1E+02 0.0024 35.4 4.0 31 217-247 202-232 (577)
184 PF07106 TBPIP: Tat binding pr 20.5 5.8E+02 0.013 24.3 8.2 47 503-549 84-132 (169)
185 PF10186 Atg14: UV radiation r 20.3 8.5E+02 0.019 24.1 11.9 22 333-354 27-48 (302)
186 PF14932 HAUS-augmin3: HAUS au 20.3 9.7E+02 0.021 24.8 11.8 82 502-612 72-153 (256)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=98.43 E-value=0.007 Score=68.36 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=112.7
Q ss_pred hHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcH
Q 005076 232 FEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSS 311 (715)
Q Consensus 232 Fe~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lss 311 (715)
+...+..-+.+..++++...+-.-+..++..+..+..++...-...-..+.+.-.|......-+. ......++-..+.
T Consensus 243 ~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~-~~~~l~~~~~~l~- 320 (880)
T PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA-DAEAVEARREELE- 320 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHH-
Confidence 33334444556666777777777777777777777777766554444444333333332221111 1111111112221
Q ss_pred HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 005076 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN 391 (715)
Q Consensus 312 kEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeN 391 (715)
+.++.+..-...+..+=.++.-+. ..+...+..=.++..-+..+-..+++++..+-..+...+.+|...
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~-----------e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l 389 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEA-----------ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211111000000000 111111222222223344556678888888888888888888888
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhh
Q 005076 392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEV 452 (715)
Q Consensus 392 d~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee 452 (715)
...+..+..+|..+...|. .++.++..++..+.++...-..+....+...++|...+
T Consensus 390 ~~el~el~~~l~~~~~~~~----~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 390 EEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHhcchhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877665443 45677888888888888888888888888888877766
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=0.14 Score=61.62 Aligned_cols=161 Identities=13% Similarity=0.163 Sum_probs=111.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHh
Q 005076 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEID 445 (715)
Q Consensus 366 kkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID 445 (715)
++.-|..+|.+|-..+..-..+|.+.+..|..+..+|...-+.|.......+.++..+|..+.++......|...-++|+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777766666667777777777778888888888888888888899999999999999999999999999999
Q ss_pred HhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 446 KFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELS 525 (715)
Q Consensus 446 ~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElS 525 (715)
.|+..- .+..|.++-+ .+... ...=+.+-.+++.+..++...+..+..+.
T Consensus 962 ~y~~~~--~~~qL~~~e~-----------------el~~~-----------~~~ie~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606 962 NKIQDG--KDDYLKQKET-----------------ELNTV-----------NAQLEECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred HHHHcC--CHHHHHHHHH-----------------HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998764 2222333222 11111 01114456666677777777777777777
Q ss_pred hhhhhHHHHHHHH--hhhhhhhhccCcchhhhh
Q 005076 526 STKSNIQQNIASF--KQRIFFIDKRVPDLEAEK 556 (715)
Q Consensus 526 S~ks~IQQ~Iasf--KQki~Fidkr~peLEAEK 556 (715)
.++..|+.+|... +..+.-+...+-+|+.+-
T Consensus 1012 ~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 1012 IQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777 555555555555555443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.64 E-value=0.12 Score=58.45 Aligned_cols=9 Identities=11% Similarity=0.460 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q 005076 286 SLLDHFSAD 294 (715)
Q Consensus 286 ~LL~~Fakd 294 (715)
.-|....+.
T Consensus 193 ~ql~~L~~q 201 (1179)
T TIGR02168 193 DILNELERQ 201 (1179)
T ss_pred HHHHHHHHH
Confidence 334444333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.64 E-value=0.21 Score=57.12 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 507 VQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 507 vQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
++.+++++......++.+......+...+..+++++.
T Consensus 394 l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 430 (1164)
T TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.47 Score=57.39 Aligned_cols=135 Identities=12% Similarity=0.200 Sum_probs=72.5
Q ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh--ccCcchhhhhhHHHHHHchHH--H
Q 005076 496 LAKTEEKLS---AEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFID--KRVPDLEAEKKVAAAARNFKE--A 568 (715)
Q Consensus 496 L~k~EEel~---~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fid--kr~peLEAEKkvAaaaRnFKE--A 568 (715)
|...+.++. ..+..++.++...+..+..++..-...+.....++.-|.+.. ..+-+++. ++..--...-+ -
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~--eI~~l~~~~~~~~~ 1049 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEE--ELKQHLKEMGQMQV 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccH
Confidence 445555553 555666666666666666666666666666666666666662 22222211 11111111111 1
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhh
Q 005076 569 ARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAA 639 (715)
Q Consensus 569 aRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aA 639 (715)
.++..|.+.|..+...+...-..+.-++..++.+|...-..|.+ .+-.-|..+|++-.+...+-
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e-------~~yk~a~~ryrka~i~~~~~ 1113 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE-------PQFRDAEEKYREMMIVMRTT 1113 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555666666666665555533 34556666777766665543
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.37 E-value=0.14 Score=58.41 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHH
Q 005076 372 NELQKLLALVRDKEKEIAENDSNIRAVEERIS 403 (715)
Q Consensus 372 ~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs 403 (715)
.++..|..-+..-+.++.+.+..+..++..+.
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~ 705 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLD 705 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.38 Score=57.53 Aligned_cols=231 Identities=21% Similarity=0.301 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhh---hhhhhhchhhHHHHHHhhhhhhHHhhhhhHHH
Q 005076 368 DILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEY---QSSINAKYDSLQSIISQLNLESEAMSMKKKEI 444 (715)
Q Consensus 368 dvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~---QssId~k~~~Lqs~lsq~~letEaL~~KkkeI 444 (715)
.-+..++..+...+...+.+|......++++.+++..+-..+... ..+++.++..++..+.......+.+...-..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1163)
T COG1196 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL 328 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666667766777777766666664433332 33444445555544444444422222221111
Q ss_pred hHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhhHHHHHHHHHHHHHHHHHHHH
Q 005076 445 DKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVK-----LAKTEEKLSAEVQTLQQEASAARA 519 (715)
Q Consensus 445 D~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~-----L~k~EEel~~dvQ~lrQevS~AR~ 519 (715)
.+=+...+..-....++. +.+.-.......+.+..+.+.+ +-..=+.+..++..+..+.+..+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~-----------~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1163)
T COG1196 329 KEKIEALKEELEERETLL-----------EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397 (1163)
T ss_pred HHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 1122222222333333333333 222224445555566666666666
Q ss_pred HHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHH
Q 005076 520 SLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKL 599 (715)
Q Consensus 520 SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~ 599 (715)
.+..+..+-..+++.+..+..++-=+.....+++++..-. - .+.+.+-.+-..|....+.+...+.....++..+
T Consensus 398 ~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
T COG1196 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL--Q---TELEELNEELEELEEQLEELRDRLKELERELAEL 472 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666554320 0 1222233333344444444444444444444444
Q ss_pred HHHHHHHHHHHhhhh
Q 005076 600 EENIEDTINRLQEIE 614 (715)
Q Consensus 600 E~~I~~t~~~lqe~E 614 (715)
...+...-+.++.++
T Consensus 473 ~~~~~~~~~~l~~~~ 487 (1163)
T COG1196 473 QEELQRLEKELSSLE 487 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=96.93 E-value=1.1 Score=51.07 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHH
Q 005076 235 AQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYD 272 (715)
Q Consensus 235 AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~ 272 (715)
.+..-..+..+++....+..-+...+..++.+..++..
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666665544433
No 9
>PRK11637 AmiB activator; Provisional
Probab=96.85 E-value=0.33 Score=51.70 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=57.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 464 VSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 464 ~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
+.......+.+.-..|+.|....-.-.+.+-.|...-.++....+.|+++....+.-++.|.+.+...++.+..+++...
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666677776666666666666666666677777777777777777777787777777777777766555
Q ss_pred hhhccC
Q 005076 544 FIDKRV 549 (715)
Q Consensus 544 Fidkr~ 549 (715)
=+.+.+
T Consensus 244 ~L~~~I 249 (428)
T PRK11637 244 RLRDSI 249 (428)
T ss_pred HHHHHH
Confidence 555443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.64 E-value=2.5 Score=50.87 Aligned_cols=105 Identities=26% Similarity=0.334 Sum_probs=63.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHH
Q 005076 365 KKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEI 444 (715)
Q Consensus 365 KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeI 444 (715)
.+.+-|..++..+...+-..+.+|+.+..++..++++|..+. ..++.++..+..+..+-+.+...+.++
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~l 875 (1163)
T COG1196 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE-----------EELEELEKELEELKEELEELEAEKEEL 875 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666677777777777777777666543 344455555555555555555555555
Q ss_pred hHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHH
Q 005076 445 DKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRR 480 (715)
Q Consensus 445 D~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr 480 (715)
..-|...+.+-..|..-++-...+...|.+.+..-+
T Consensus 876 ~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 911 (1163)
T COG1196 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLR 911 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666566556666666665666666655554433
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=96.45 E-value=2.4 Score=48.34 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=39.8
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHch--HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHH
Q 005076 525 SSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNF--KEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEEN 602 (715)
Q Consensus 525 SS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnF--KEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~ 602 (715)
......++.+|..++..|.=+.+++.+| +.++....++| .+-..+-.+-..++.+..++...++.....++.++++
T Consensus 618 ~~~l~~~~~~l~~~~~~i~~l~~~i~~l--~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 695 (880)
T PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEEL--RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555554444444444 22333332222 2233333444445555555555566666666666655
Q ss_pred HHHHHHHHhh
Q 005076 603 IEDTINRLQE 612 (715)
Q Consensus 603 I~~t~~~lqe 612 (715)
|...-+.+..
T Consensus 696 i~~~~~~~~~ 705 (880)
T PRK03918 696 LEKLKEELEE 705 (880)
T ss_pred HHHHHHHHHH
Confidence 5554433333
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.06 E-value=5.3 Score=48.52 Aligned_cols=296 Identities=18% Similarity=0.288 Sum_probs=136.0
Q ss_pred hcHHHHHHHHhhHhhhh-hhhhhHHH-------HHhHHHHHHh-hhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q 005076 309 LSSEEMEKWLASTEALE-GRKIELEI-------ESHLVNEARA-VLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLA 379 (715)
Q Consensus 309 lsskEme~W~ss~E~LE-~KK~Elei-------Es~~v~eAr~-~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~ 379 (715)
+....|+.|+..+.... ..++.-.+ -...-.++++ .|-..+.+.+.....++..+..+..-+..++.+|..
T Consensus 223 ~~~~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (1201)
T PF12128_consen 223 LKKNDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLED 302 (1201)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 67788899988876543 11221111 1111111111 123445555555566666666666666666666655
Q ss_pred HHHhh----hhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcc
Q 005076 380 LVRDK----EKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRG 455 (715)
Q Consensus 380 lVr~K----E~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~g 455 (715)
..+.. ..++...++.|.....+|..+-..+..++. ..+..+...+.++..-...+..+++.++.+.+.-..-.
T Consensus 303 ~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~---~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~ 379 (1201)
T PF12128_consen 303 EIKELRDELNKELSALNADLARIKSELDEIEQQKKDYED---ADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIE 379 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 345555566666666666665555555532 11223333333333334444445555555544443333
Q ss_pred cchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHH
Q 005076 456 TKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEAS-AARASLQELSSTKSNIQQN 534 (715)
Q Consensus 456 akLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS-~AR~SLQElSS~ks~IQQ~ 534 (715)
++.......-...--. +.-.++.. ...| |+.+..+ =++.-..++.+.++.. ...+-++++...+..+...
T Consensus 380 ~ky~~~~~~l~~~~~~--~~~~~~~~-~~~~---~e~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1201)
T PF12128_consen 380 SKYNKLKQKLEEAFNR--QQERLQAQ-QDEI---REEKAER---REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSE 450 (1201)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHH-HHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222111111 11122222 2222 2222221 1223333444444443 3445677888888888888
Q ss_pred HHHHhhhhhhhhccCcchhhhhhHHHHHHc--hHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005076 535 IASFKQRIFFIDKRVPDLEAEKKVAAAARN--FKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQE 612 (715)
Q Consensus 535 IasfKQki~Fidkr~peLEAEKkvAaaaRn--FKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe 612 (715)
+..+|+++.-.. --|++-.+..++-++-. ..+.......-..+..+...++..-+++...|..++.++...-.++.+
T Consensus 451 l~~l~~~~~~~~-~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 529 (1201)
T PF12128_consen 451 LAELKQQLKNPQ-YTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAE 529 (1201)
T ss_pred HHHHHHHHhCcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875332 23444333332222111 111222222233333444444444455555555555555544444444
Q ss_pred hhhhh
Q 005076 613 IEGLI 617 (715)
Q Consensus 613 ~EgLI 617 (715)
+..++
T Consensus 530 l~~~L 534 (1201)
T PF12128_consen 530 LQRQL 534 (1201)
T ss_pred HHHhh
Confidence 44444
No 13
>PRK11637 AmiB activator; Provisional
Probab=95.62 E-value=1.7 Score=46.47 Aligned_cols=80 Identities=13% Similarity=0.227 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcc
Q 005076 472 YWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPD 551 (715)
Q Consensus 472 ~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~pe 551 (715)
|..+...|+.++..+-..+ -.|.....++....+.++..........++|...+..-|+.+..+++.+.=....+-+
T Consensus 161 l~~i~~~d~~~l~~l~~~~---~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~ 237 (428)
T PRK11637 161 FGYLNQARQETIAELKQTR---EELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSE 237 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777665443 3455555666666666666666666666666666666666666666655544444444
Q ss_pred hhh
Q 005076 552 LEA 554 (715)
Q Consensus 552 LEA 554 (715)
|++
T Consensus 238 l~~ 240 (428)
T PRK11637 238 LRA 240 (428)
T ss_pred HHH
Confidence 433
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.57 E-value=3.4 Score=44.57 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=7.0
Q ss_pred hHHHHHHHHHhc
Q 005076 699 GRKQLAELVAAI 710 (715)
Q Consensus 699 ~~k~L~Ela~s~ 710 (715)
|.++...||..+
T Consensus 472 Ge~~r~~la~~l 483 (562)
T PHA02562 472 GEKARIDLALLF 483 (562)
T ss_pred hHHHHHHHHHHH
Confidence 455666666544
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.54 E-value=6 Score=45.28 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHH
Q 005076 237 RISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHF 291 (715)
Q Consensus 237 riSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~F 291 (715)
.+-+.+..+.++.+.|-..|+...-.|+.+-.+.+++..+.=...+|-..|..+.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888888888888888888888888887776655556655555554
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.32 E-value=13 Score=47.93 Aligned_cols=437 Identities=19% Similarity=0.217 Sum_probs=217.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHH---HHHHHHhhhhhchHHHHHHhHH
Q 005076 165 DPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQL---EKQLDEACEAEDFEAAQRISDL 241 (715)
Q Consensus 165 ~~~~rl~~lrsqIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~L---E~eLEeACEaEDFe~AeriSds 241 (715)
.+..+++.+++|+..-...-.+++......+.+.-..|.+.-++.+.-.--++.| --++-++|- -|+ +-+-+.
T Consensus 1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~--k~e--~~~~~~ 1373 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK--KFE--EEVLQR 1373 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHH
Confidence 4455577788888877777778888888888887777776666555443222222 222222221 111 112233
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHHHHHHHhhH
Q 005076 242 LAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLAST 321 (715)
Q Consensus 242 LAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskEme~W~ss~ 321 (715)
+..+|..|..+..-+-.++...+.+..++...-..+-....|...+.-. .+..+.+-..+.+=..=..+=+..|....
T Consensus 1374 ~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d--~~~~~~~~~~le~k~k~f~k~l~e~k~~~ 1451 (1930)
T KOG0161|consen 1374 LEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD--LERSRAAVAALEKKQKRFEKLLAEWKKKL 1451 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555555555544422222212221111110 01111222223333333344555665555
Q ss_pred hhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHH
Q 005076 322 EALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER 401 (715)
Q Consensus 322 E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~er 401 (715)
+.|-.--=...-|.+-...=...|.+.++.+.+ .++.+-..+..|..|+.+|-.-+...++-+.+...-.+..+.+
T Consensus 1452 e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e----~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1452 EKLQAELDAAQRELRQLSTELQKLKNALEELLE----QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544221111112222222222233333333333 5666666666777777766655554444443333333333333
Q ss_pred HHHHhhhhhhhhhh----hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhccc--------chHHHHHhcHHHH
Q 005076 402 ISIVVSDFQEYQSS----INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGT--------KLKELARVSADEA 469 (715)
Q Consensus 402 Is~VVS~F~e~Qss----Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~ga--------kLRe~~~~s~~EA 469 (715)
+..+=....+...+ =+.++. +|-. +.-.|-+|+++|..-++.-. .++.+...-.+|+
T Consensus 1528 ~~elQ~aLeElE~~le~eE~~~lr-~~~~----------~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~ 1596 (1930)
T KOG0161|consen 1528 KEELQAALEELEAALEAEEDKKLR-LQLE----------LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAET 1596 (1930)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHH-HHHH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33222222222211 111111 2222 45566777777766544322 2333444445788
Q ss_pred HHHHHHHHHHHHHHHHHh-------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhHHHHH
Q 005076 470 KEYWEVVELRRSLMSSIL-------KSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELS-------STKSNIQQNI 535 (715)
Q Consensus 470 k~~qe~V~lRr~l~ssIl-------KSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElS-------S~ks~IQQ~I 535 (715)
+.=.+++.+++++-.-|= -+.--+..+.|.=-++...+++||.++.+++.+.+++- -+-...+.++
T Consensus 1597 r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ 1676 (1930)
T KOG0161|consen 1597 RSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAEL 1676 (1930)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888886654332 23334555666667788999999999999999999887 4455667777
Q ss_pred HHHhhhhhhhhccCcchhhhhhHHHHHHchHHH-------------------------------------HHHHHHhhhh
Q 005076 536 ASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEA-------------------------------------ARLAAEAKSL 578 (715)
Q Consensus 536 asfKQki~Fidkr~peLEAEKkvAaaaRnFKEA-------------------------------------aRiAAEAKaL 578 (715)
.+++..+.=..+---.+|.|.-=++-.-|++-+ -...+.|.-+
T Consensus 1677 eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~ 1756 (1930)
T KOG0161|consen 1677 EELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKL 1756 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777766654332222222222222222222211 1223333334
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhh
Q 005076 579 SVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEK 622 (715)
Q Consensus 579 ~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEk 622 (715)
.-|-..-+....+-....+.||..+++-=-+|++.|+.-+.+-|
T Consensus 1757 ~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k 1800 (1930)
T KOG0161|consen 1757 AEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGK 1800 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence 44444444444444555566666777777777777766554444
No 17
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.98 E-value=7.7 Score=43.33 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHH---HHH
Q 005076 214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASL---LDH 290 (715)
Q Consensus 214 ~~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~L---L~~ 290 (715)
.++..++.||.-+= +-+-++-..|..+|++|...+.=|-.|.--.|-+-.+|+.+..++..+.+.+-.. +.+
T Consensus 27 e~~~~~e~eL~~~q-----eel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e 101 (522)
T PF05701_consen 27 ERVKEKETELEKAQ-----EELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKE 101 (522)
T ss_pred hhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 44556666665442 2345667789999999999999999999999999999999999988887665432 223
Q ss_pred HhhhhhhhHHHHH----HHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhh
Q 005076 291 FSADASNSADTFL----KKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKK 366 (715)
Q Consensus 291 FakdA~~~A~~~~----k~A~~lsskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~Kk 366 (715)
.-......+...+ ..+.+-|..-|-...+..+.|+.-+.|| .+- .+++. ..+.|. ++-.+--....++
T Consensus 102 ~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~--~~~--~~~k~---~A~~~a-eea~~~a~~~~~k 173 (522)
T PF05701_consen 102 LEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQEL--ASA--LDAKN---AALKQA-EEAVSAAEENEEK 173 (522)
T ss_pred HhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHH---HHHHHH-HHHHHHHHHHHHH
Confidence 3233333333323 3366667777777777777665444333 332 22221 112221 2222333455667
Q ss_pred hhhHHHHHHHH
Q 005076 367 KDILTNELQKL 377 (715)
Q Consensus 367 kdvL~~ELe~L 377 (715)
=+.|+.||..|
T Consensus 174 ve~L~~Ei~~l 184 (522)
T PF05701_consen 174 VEELSKEIIAL 184 (522)
T ss_pred HHHHHHHHHHH
Confidence 77788875544
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.75 E-value=0.13 Score=60.47 Aligned_cols=12 Identities=50% Similarity=0.545 Sum_probs=7.6
Q ss_pred hhceeccCCccc
Q 005076 11 EGMVLFTPSQLA 22 (715)
Q Consensus 11 EGMVLFtPs~~~ 22 (715)
|+|-|=+|++..
T Consensus 510 e~~al~s~~~~~ 521 (1102)
T KOG1924|consen 510 EKQALSSPSQLL 521 (1102)
T ss_pred hhhhccCcccCC
Confidence 466677776643
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.43 E-value=8.9 Score=41.50 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 005076 504 SAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQR 541 (715)
Q Consensus 504 ~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQk 541 (715)
...+..+++.+..-|.++.++...+..+|.+|.++..+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555555555555666666555555
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.21 E-value=12 Score=42.08 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhcc-CcchhhhhhHHHHHHchHHHHHHHHHhhhh
Q 005076 500 EEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKR-VPDLEAEKKVAAAARNFKEAARLAAEAKSL 578 (715)
Q Consensus 500 EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr-~peLEAEKkvAaaaRnFKEAaRiAAEAKaL 578 (715)
..++...++.|+..-..||..|+.+...-+.|+.-| .++ +|.+...-.-.-. .--.+-.++..+-..-
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l----------~k~~lpgip~~y~~~~~-~~~~~i~~l~~~L~~g 467 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL----------EKSNLPGLPEDYLEMFF-EVSDEIEALAEELEEK 467 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCCCCcHHHHHHHH-HHHHHHHHHHHHhccC
Confidence 566777888888888889888888877655544332 233 6665543221100 0001223344444445
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 005076 579 SVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISS 619 (715)
Q Consensus 579 ~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~ 619 (715)
.+--+.+...++.+...+..+++...+.++...-+|.+|--
T Consensus 468 ~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 468 PINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999999976
No 21
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=93.86 E-value=0.098 Score=39.22 Aligned_cols=33 Identities=39% Similarity=0.626 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 005076 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (715)
Q Consensus 216 h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKe 248 (715)
..+|+.+++.|++.+|||.|-+|-|.+..++++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999988763
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.48 E-value=9.2 Score=38.34 Aligned_cols=177 Identities=20% Similarity=0.374 Sum_probs=111.9
Q ss_pred hhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhc----ccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005076 417 NAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDR----GTKLKELARVSADEAKEYWEVVELRRSLMSSILKSRED 492 (715)
Q Consensus 417 d~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~----gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEd 492 (715)
+..|...+..|..+..........++-+.+-....+.+ ...|++....+.+=-.-|.++ ..|=..+..-|.--++
T Consensus 56 eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~-~rkl~~~E~~Le~aEe 134 (237)
T PF00261_consen 56 EERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV-ERKLKVLEQELERAEE 134 (237)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555444433332 334555555555555555543 3344444444554555
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHH
Q 005076 493 KVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLA 572 (715)
Q Consensus 493 k~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiA 572 (715)
|+.. +-.-|.-|.+++.....+|+.+...-....+....|..+|-|...++-+ +|.+.-.|-|+
T Consensus 135 R~e~------~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke--aE~Rae~aE~~-------- 198 (237)
T PF00261_consen 135 RAEA------AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE--AENRAEFAERR-------- 198 (237)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------
T ss_pred HHhh------hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------
Confidence 5433 3456778888888888888887777777777777777777777666543 45555555444
Q ss_pred HHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005076 573 AEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQE 612 (715)
Q Consensus 573 AEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe 612 (715)
.+.|..+.+.+...|.........+..++..|++-|.+
T Consensus 199 --v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 199 --VKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35677788888899999999999999999888876653
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.41 E-value=11 Score=46.25 Aligned_cols=144 Identities=20% Similarity=0.302 Sum_probs=88.1
Q ss_pred cchHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 005076 456 TKLKELARVSADEAKEYWEVVELRRSLMSSIL---KSREDKVKLAKTEEK-LSAEVQTLQQEASAARASLQELSSTKSNI 531 (715)
Q Consensus 456 akLRe~~~~s~~EAk~~qe~V~lRr~l~ssIl---KSrEdk~~L~k~EEe-l~~dvQ~lrQevS~AR~SLQElSS~ks~I 531 (715)
-.+.+.+..-.+....|++-++-+-.=-.++. ++-|.+++=.+-|-. -..+++-+++-+-++|--.-++-.....+
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~ 363 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI 363 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666667665554433222222 444444443332211 12233444444444444344444556688
Q ss_pred HHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005076 532 QQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQ 611 (715)
Q Consensus 532 QQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lq 611 (715)
|++|...|-++-++.|.+-.++++- -+.+.+++++.+.+++.-..+.+++|+.|..--.+++
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~------------------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQT------------------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888777654 4667778888888888888888888887777777776
Q ss_pred hhhhhh
Q 005076 612 EIEGLI 617 (715)
Q Consensus 612 e~EgLI 617 (715)
+|=.=+
T Consensus 426 ~~~~~~ 431 (1074)
T KOG0250|consen 426 EVKEKA 431 (1074)
T ss_pred HHHHHH
Confidence 654433
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.20 E-value=11 Score=38.26 Aligned_cols=106 Identities=21% Similarity=0.374 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccch
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEK 582 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EK 582 (715)
+...+......+..++.-+.++...-.+++-+|.+.+.+.....+++-+|+..-.. +.
T Consensus 200 l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~----------------------~~ 257 (312)
T PF00038_consen 200 LRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE----------------------ER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
T ss_pred ccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH----------------------HH
Confidence 33334444444444555555555555566666777777777666666666654321 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhh-HHHHHHHHHHH
Q 005076 583 DGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEK-EVAMARFQRLR 633 (715)
Q Consensus 583 e~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEk-E~Ama~~qrLr 633 (715)
+..+..+..-..+|..+-.+|..... +++.|.-+|-. +.=++.|.+|+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~~---ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQLR---EYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHH
Confidence 22333344444455555555544433 33444444422 33356788885
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.02 E-value=0.23 Score=58.49 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHhhhhhhchhh
Q 005076 252 LLIALRDAEAHCDAID 267 (715)
Q Consensus 252 ll~aLrdAe~~~D~vD 267 (715)
.|.-|++-.+.||-+.
T Consensus 747 ~l~~L~e~Kaeye~l~ 762 (1102)
T KOG1924|consen 747 QLNKLSELKAEYEDLP 762 (1102)
T ss_pred HHHHHHHHHHhccCCC
Confidence 3445555556666554
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=92.88 E-value=21 Score=40.88 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 005076 177 ISDKLNRARELA 188 (715)
Q Consensus 177 Is~KL~~~~q~a 188 (715)
...++..+....
T Consensus 174 ~~~~~~~l~~~l 185 (880)
T PRK03918 174 IKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.98 E-value=19 Score=36.21 Aligned_cols=153 Identities=25% Similarity=0.256 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHH
Q 005076 176 VISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIA 255 (715)
Q Consensus 176 qIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~~ll~a 255 (715)
+|-..|+.+.+.+...-..-+..-.++-++=.++.+..-+-..||.+|+.+=+ +...+..-|..+++..+-.-.+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee-----rL~~~~~kL~~~e~~~de~er~ 79 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE-----RLEEATEKLEEAEKRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-----CCCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666677777777777777777765554321 1222333444444444444444
Q ss_pred HHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH------HHHHHHhhHhhhhhhhh
Q 005076 256 LRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE------EMEKWLASTEALEGRKI 329 (715)
Q Consensus 256 LrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk------Eme~W~ss~E~LE~KK~ 329 (715)
+ .+|+++...-++....|+.=-+.|...++.+..+..+..++ +++.--...+.++.+-.
T Consensus 80 ~---------------k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~ 144 (237)
T PF00261_consen 80 R---------------KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK 144 (237)
T ss_dssp H---------------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence 4 35555555555666666666777777777777777766554 45555566677777777
Q ss_pred hHHHHHhHHHHHHhhhhhh
Q 005076 330 ELEIESHLVNEARAVLNNS 348 (715)
Q Consensus 330 EleiEs~~v~eAr~~Ln~s 348 (715)
+|+-+.+.|.+---.|.-+
T Consensus 145 eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7777777665544444333
No 28
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.07 E-value=61 Score=40.54 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhh--hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhh
Q 005076 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSS--INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDE 451 (715)
Q Consensus 374 Le~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~Qss--Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~e 451 (715)
|.+|=+.+...+.+|++.+.+|.+++.++..+...+...=++ +..-+..+...-..+..-...+...+...+.....-
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~ 823 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAW 823 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555556677777777777777777777766655553 344455566666666666666666666666666655
Q ss_pred hhcccchHHHHH
Q 005076 452 VDRGTKLKELAR 463 (715)
Q Consensus 452 e~~gakLRe~~~ 463 (715)
.+.-..+++.+.
T Consensus 824 ~~a~~~l~~aaa 835 (1353)
T TIGR02680 824 KQARRELERDAA 835 (1353)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.65 E-value=70 Score=39.37 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhh
Q 005076 236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAA 280 (715)
Q Consensus 236 eriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~Iaa 280 (715)
.-+.+.+..+.+.++.|.....+.+..|+..=.++.+-+..++..
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~ 399 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQER 399 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999988888888776654
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.31 E-value=36 Score=34.55 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHH----HHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhh
Q 005076 369 ILTNELQKLLALVRDKEKEIAENDSNIRAVEER----ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMS 438 (715)
Q Consensus 369 vL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~er----Is~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~ 438 (715)
.|-+=|+..+..||.-|.+=......|.....+ .+.+-..|..--.+.-..++.+....+++..+...+.
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 477778899999999999998888888888887 3334444544444555666666666677766666554
No 31
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.27 E-value=71 Score=37.89 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=18.7
Q ss_pred hhhHHHHHH---HHHHHHHhhhhhhhhhc---chHHHHHHHHHHHh
Q 005076 367 KDILTNELQ---KLLALVRDKEKEIAEND---SNIRAVEERISIVV 406 (715)
Q Consensus 367 kdvL~~ELe---~LL~lVr~KE~EIAeNd---~~I~aV~erIs~VV 406 (715)
.+.+-.|+. +++.-++........+. ..|+.+.+++..+-
T Consensus 554 ~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 599 (908)
T COG0419 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 44544555555544444 44444444444333
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.14 E-value=36 Score=35.79 Aligned_cols=142 Identities=24% Similarity=0.311 Sum_probs=97.0
Q ss_pred chHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 005076 457 KLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIA 536 (715)
Q Consensus 457 kLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~Ia 536 (715)
.++-+=..|--+||.-|- +-|-++...|.. +|...=+.|-+|...|.....-....+..+..++..++.+|.
T Consensus 123 q~~~vK~~aRl~aK~~WY--eWR~~ll~gl~~------~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~ 194 (325)
T PF08317_consen 123 QFQLVKTYARLEAKKMWY--EWRMQLLEGLKE------GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELE 194 (325)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667776553 456666666544 455555566777888888888888999999999999999999
Q ss_pred HHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005076 537 SFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGL 616 (715)
Q Consensus 537 sfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgL 616 (715)
.+|+...-++.-=| .+-..+-++-.++..+.+....++.....+|+.++..|.....+++++..-
T Consensus 195 ~Lk~~~~e~~~~D~---------------~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 195 NLKQLVEEIESCDQ---------------EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHhhhhhcCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765433222 122222345556666666777777777788888888888888888887776
Q ss_pred hhchh
Q 005076 617 ISSKE 621 (715)
Q Consensus 617 I~~KE 621 (715)
|.--+
T Consensus 260 I~e~~ 264 (325)
T PF08317_consen 260 IAEAE 264 (325)
T ss_pred HHHHH
Confidence 65433
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.92 E-value=40 Score=39.66 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=55.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHH
Q 005076 496 LAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAA 573 (715)
Q Consensus 496 L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAA 573 (715)
|...|..+..+++.+|++.-....-+++|...|..=-|.|.++-.||. +-|.-..+.||-+.+--+-=|++..-||
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~--eE~~~R~~lEkQL~eErk~r~~ee~~aa 526 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA--EERRQRASLEKQLQEERKARKEEEEKAA 526 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 677889999999999999999999999999998888888888877753 4444445555555554443333333333
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.78 E-value=62 Score=36.71 Aligned_cols=415 Identities=18% Similarity=0.281 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHH---HHhhhhhchHHHHHHhHHHHHHHHhHHHHH
Q 005076 177 ISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQL---DEACEAEDFEAAQRISDLLAAAETHQQSLL 253 (715)
Q Consensus 177 Is~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eL---EeACEaEDFe~AeriSdsLAa~EKek~~ll 253 (715)
|..+|..+.++--+--+ ...-.+-|+-.+++.. ..-.++|..| |+++..-.|-.|...- ..+-
T Consensus 42 v~~el~kvk~l~l~Gqt--~~~fe~w~~~w~~i~~--~~~~~ie~~L~~ae~~~~~~rf~ka~~~i----------~~~~ 107 (560)
T PF06160_consen 42 VADELSKVKKLNLTGQT--EEKFEEWRQKWDEIVT--KQLPEIEEQLFEAEEYADKYRFKKAKQAI----------KEIE 107 (560)
T ss_pred HHHHHHHHHhccccHHH--HHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHhcccHHHHHHHH----------HHHH
Confidence 44555555554222111 2234444555555443 3446788877 5555555566555443 3344
Q ss_pred HHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHh---hhhhhhHHHHHH-------Hhhhhc--HHHHHHHHhhH
Q 005076 254 IALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFS---ADASNSADTFLK-------KAESLS--SEEMEKWLAST 321 (715)
Q Consensus 254 ~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~Fa---kdA~~~A~~~~k-------~A~~ls--skEme~W~ss~ 321 (715)
..|.+++.+++.|-.+|.+.+.+.-.--++--.|.+.|. |...+|..+... +-..+- -.+.+.|.++.
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567788999999999999999998888888888888775 444444433322 222221 13566777777
Q ss_pred hhhhhhhhhHHHHHhH-------------HHHHHhhhhhhhhhhhhhhh--h------HHHHHhhhhhhHHHHHHHHHHH
Q 005076 322 EALEGRKIELEIESHL-------------VNEARAVLNNSIEHSVEDDL--R------EKEILYKKKDILTNELQKLLAL 380 (715)
Q Consensus 322 E~LE~KK~EleiEs~~-------------v~eAr~~Ln~sIEhsVEdDk--r------EKeiL~KkkdvL~~ELe~LL~l 380 (715)
.-++.+.+=..|+.++ +.+....+-+-|+++-...+ . +..-+.+.=+.+.+.|..++.+
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777777766666543 23333333333333222111 1 1112333344566666666666
Q ss_pred HHhhhhhhhhhcchHHHHHHHHHHHhhhhh---hhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccc
Q 005076 381 VRDKEKEIAENDSNIRAVEERISIVVSDFQ---EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTK 457 (715)
Q Consensus 381 Vr~KE~EIAeNd~~I~aV~erIs~VVS~F~---e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gak 457 (715)
+ +.-++.+....+..+.++|...-..|. ...-.+...++.+...+.++......|..-=..|..--.........
T Consensus 268 L--~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~ 345 (560)
T PF06160_consen 268 L--KNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEI 345 (560)
T ss_pred H--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 6 344666677777777888777666654 34455666666677777776666666655444444444444433333
Q ss_pred hHHHHHhcHHHHHHHHHHHHHHH--HHHHHHhhhhhh--hhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005076 458 LKELARVSADEAKEYWEVVELRR--SLMSSILKSRED--KVKLA---KTEEKLSAEVQTLQQEASAARASLQELSSTKSN 530 (715)
Q Consensus 458 LRe~~~~s~~EAk~~qe~V~lRr--~l~ssIlKSrEd--k~~L~---k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~ 530 (715)
.|.+-.-...--+.|...+..-. ...-|.+..+-. .-.|. +.-.++...++.|+..-..||..|+.+...-..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433332222233332222111 011111111111 11222 233456777888888888888888877665555
Q ss_pred HHHHHHHHhhhhhhhhccCcchhhhhh--HHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005076 531 IQQNIASFKQRIFFIDKRVPDLEAEKK--VAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTIN 608 (715)
Q Consensus 531 IQQ~IasfKQki~Fidkr~peLEAEKk--vAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~ 608 (715)
|+..|. -.++|-+=.+-. .-.+. .+-.+++..--.....-+.++..++.|..+++.+.+.....|+
T Consensus 426 ikR~le---------k~nLPGlp~~y~~~~~~~~---~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 426 IKRRLE---------KSNLPGLPEDYLDYFFDVS---DEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHHHH---------HcCCCCCCHHHHHHHHHHH---HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544442 235666643321 22222 3445566666666678899999999999999999999999999
Q ss_pred HHhhhhhhhhc
Q 005076 609 RLQEIEGLISS 619 (715)
Q Consensus 609 ~lqe~EgLI~~ 619 (715)
.-.=+|.+|.-
T Consensus 494 ~A~L~E~~iQY 504 (560)
T PF06160_consen 494 NATLAEQLIQY 504 (560)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 35
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.42 E-value=63 Score=36.43 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHH
Q 005076 365 KKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEI 444 (715)
Q Consensus 365 KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeI 444 (715)
++-+-...|++.+=..++....+-+.....|+.++..|+.|-.--.+++.+++ .+...++.++..-++|.-.+ .
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~----~~~~~I~~~~~~l~~l~~q~--r 111 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK----KLRKQIADLNARLNALEVQE--R 111 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHhhHHHHHHHHHHHHHHH--H
Confidence 34444555555555555555555555555555555555555444444443322 12222222222222222222 2
Q ss_pred hHhhhhhhhcccchHH------HHHhcHHH-------HHHHHHHHHHHHHHHHHHhhhh
Q 005076 445 DKFLNDEVDRGTKLKE------LARVSADE-------AKEYWEVVELRRSLMSSILKSR 490 (715)
Q Consensus 445 D~fl~~ee~~gakLRe------~~~~s~~E-------Ak~~qe~V~lRr~l~ssIlKSr 490 (715)
..+-.+++.-++--|- .+.++.++ +.-|+.++.-|+..+.++-+..
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~ 170 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATL 170 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2222222222222221 23344444 4578888888888877776543
No 36
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.99 E-value=82 Score=37.38 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 005076 180 KLNRARELAASVSAARKDSIR 200 (715)
Q Consensus 180 KL~~~~q~aasvsa~Rk~~~~ 200 (715)
.+..+....+.+...++....
T Consensus 233 e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 233 EIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 37
>PRK01156 chromosome segregation protein; Provisional
Probab=85.85 E-value=78 Score=37.02 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 515 SAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 515 S~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
..-+.-+.+|......+.+.|..++..|.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~ 440 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLD 440 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555556666666666555444
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.60 E-value=68 Score=36.11 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHh
Q 005076 200 RRRRKAADDVELASLRHSQLEKQLDEA 226 (715)
Q Consensus 200 ~rRRKaaed~~~as~~h~~LE~eLEeA 226 (715)
+-|-+|..++..+=..-.+|-.+|+.+
T Consensus 55 ~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 55 REKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666666666644
No 39
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.39 E-value=1.2e+02 Score=38.55 Aligned_cols=156 Identities=23% Similarity=0.228 Sum_probs=75.2
Q ss_pred hhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhc-----------------chHHHHHHHHHHHhhhhhhhhh
Q 005076 352 SVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEND-----------------SNIRAVEERISIVVSDFQEYQS 414 (715)
Q Consensus 352 sVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd-----------------~~I~aV~erIs~VVS~F~e~Qs 414 (715)
.|.+-.+|.+.+.++.+.+.++++++..+-+.-+.-+.+.. .+|+.+.+ -+.+|...-+
T Consensus 516 ~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e----~~~~~~d~l~ 591 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE----ENRDLEDKLS 591 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh----ccccHHHHHH
Confidence 34455666666677777777777777666665554333333 33333333 1223332222
Q ss_pred hhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005076 415 SINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKV 494 (715)
Q Consensus 415 sId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~ 494 (715)
.+..--..|-....++..+.+.....+.+|..-+..-+..-+.|.+-...-.- ..+.+-++||..+..+--+-+.
T Consensus 592 ~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~---~l~k~~el~r~~~e~~~~~ek~-- 666 (1317)
T KOG0612|consen 592 LLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKK---ELLKVEELKRENQERISDSEKE-- 666 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHH--
Confidence 22222222222333444455555555555555555444444444433332222 2233444777777766555443
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARA 519 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~ 519 (715)
.+|-++--..||+++++-..++
T Consensus 667 ---~~e~~~e~~lk~~q~~~eq~~~ 688 (1317)
T KOG0612|consen 667 ---ALEIKLERKLKMLQNELEQENA 688 (1317)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666655544433
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.85 E-value=84 Score=36.50 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhH-------HhhhhhHHH
Q 005076 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESE-------AMSMKKKEI 444 (715)
Q Consensus 372 ~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letE-------aL~~KkkeI 444 (715)
+.+.+.+...-..|+||+-+..+|+.+++....+-.. +.--++.|+..-.++|.||- ..+.-+.+|
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e-------n~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE-------NSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444556666677777777777777777766554333 33334444444455555541 123334455
Q ss_pred hHhhhhhhhcccchHHHHHhcH-HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005076 445 DKFLNDEVDRGTKLKELARVSA-DEAKEYWEVVELRRSLMSSILKSRED 492 (715)
Q Consensus 445 D~fl~~ee~~gakLRe~~~~s~-~EAk~~qe~V~lRr~l~ssIlKSrEd 492 (715)
+-....-++.=..++-+++.-. .+.-. ..+.+|+.+|-..|.+
T Consensus 214 ~f~~~~h~~eI~e~~~~~~rd~t~~~r~-----~F~~eL~~Ai~eiRaq 257 (546)
T KOG0977|consen 214 AFLKRIHKQEIEEERRKARRDTTADNRE-----YFKNELALAIREIRAQ 257 (546)
T ss_pred HHHHhccHHHHHHHHHHHhhcccccchH-----HHHHHHHHHHHHHHHH
Confidence 5444433333222222222111 11111 2355777777766643
No 41
>PRK09039 hypothetical protein; Validated
Probab=84.30 E-value=58 Score=34.97 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005076 504 SAEVQTLQQEASAARASL 521 (715)
Q Consensus 504 ~~dvQ~lrQevS~AR~SL 521 (715)
..+|+.|++|+.+-|..|
T Consensus 136 ~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 136 LAQVELLNQQIAALRRQL 153 (343)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666666666666653
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.59 E-value=18 Score=38.50 Aligned_cols=176 Identities=23% Similarity=0.259 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhh
Q 005076 466 ADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFI 545 (715)
Q Consensus 466 ~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fi 545 (715)
--+||.-| -+-|-++.-.|... |...=+.+-.|-+.|-.+..-+-.-+-++..+...++.++..+++....|
T Consensus 127 Rl~ak~~W--YeWR~kllegLk~~------L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 127 RLEAKKMW--YEWRMKLLEGLKEG------LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555544 34566666666443 44444445555566666666677788889999999999999999998888
Q ss_pred hccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHH
Q 005076 546 DKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVA 625 (715)
Q Consensus 546 dkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~A 625 (715)
+.--|+. ..++=++-+.+..+-.....+++-...+|+.++..|++..+++++|.+-|.-=|+-.-
T Consensus 199 ~~~d~~e---------------L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 199 EDCDPTE---------------LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HhCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777653 2222245556677778888889999999999999999999999999998865444211
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhhcCChHHHHHHHHHHHHhchHHHhhhh-cccccccccCCCcccchhhH
Q 005076 626 MARFQRLRIVAGAATAERSAALELGDLEEANLLLAEAEAAGQEAKKLEE-ANLKEEEFTNLPEHFISMEL 694 (715)
Q Consensus 626 ma~~qrLrL~a~aArAEr~aA~E~~D~EEa~lL~aEAeAAe~eA~~Lk~-y~~~~ed~~~~~~~~i~m~l 694 (715)
.- =.-+.-|++.|.+.- ..|+. +|+...-++ .+.+.|.|
T Consensus 264 -----~~---------------r~~t~~Ei~~Lk~~~-------~~Le~l~g~~~~~~~---~~~l~~~~ 303 (312)
T smart00787 264 -----QC---------------RGFTFKEIEKLKEQL-------KLLQSLTGWKITKLS---GNTLSMTY 303 (312)
T ss_pred -----hc---------------CCCCHHHHHHHHHHH-------HHHHHHhCCeeEecc---CCeEEEEe
Confidence 10 123556777777643 44555 666644333 45555544
No 43
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=83.43 E-value=19 Score=35.86 Aligned_cols=123 Identities=26% Similarity=0.329 Sum_probs=83.8
Q ss_pred HHHHhhhhcHHHHHHHHhhHhhhhhhhhhHH--HHHhH--HHHHHhh---hhhhhhhhhhhhhhHHHHHhhhhhhHHHHH
Q 005076 302 FLKKAESLSSEEMEKWLASTEALEGRKIELE--IESHL--VNEARAV---LNNSIEHSVEDDLREKEILYKKKDILTNEL 374 (715)
Q Consensus 302 ~~k~A~~lsskEme~W~ss~E~LE~KK~Ele--iEs~~--v~eAr~~---Ln~sIEhsVEdDkrEKeiL~KkkdvL~~EL 374 (715)
....++++|..-+--+....|.+|.||+|.. |..++ |.++--. +-.-+|..+-+-++|-+++.||=|....||
T Consensus 21 ~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreL 100 (159)
T PF04949_consen 21 MDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNREL 100 (159)
T ss_pred cchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Confidence 3456777788888888889999999998863 22221 2222222 222355678888999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhH
Q 005076 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK 442 (715)
Q Consensus 375 e~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~Kkk 442 (715)
.-|=--++.||+|.-+.-....+-...=.. |-..|-.+-.++|.+.+||=
T Consensus 101 kpl~~~cqKKEkEykealea~nEknkeK~~------------------Lv~~L~eLv~eSE~~rmKKL 150 (159)
T PF04949_consen 101 KPLGQSCQKKEKEYKEALEAFNEKNKEKAQ------------------LVTRLMELVSESERLRMKKL 150 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987653322222222222 33344446678888888873
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.66 E-value=1.7e+02 Score=37.62 Aligned_cols=216 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhhh-hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHH-HHHHHHH
Q 005076 398 VEERISIVVSDFQEYQSS-INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADE-AKEYWEV 475 (715)
Q Consensus 398 V~erIs~VVS~F~e~Qss-Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~E-Ak~~qe~ 475 (715)
+...|...|..|-=..++ |+.-++.+++.+.....--+++..-..+=|-| +.+|+.+..- |..|-..
T Consensus 209 i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlF-----------k~lI~~~~~~~aad~~r~ 277 (1486)
T PRK04863 209 ISSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLF-----------KHLITESTNYVAADYMRH 277 (1486)
T ss_pred HHHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHH-----------HHHhhhhhhhhHHHHhhC
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhh
Q 005076 476 VELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAE 555 (715)
Q Consensus 476 V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAE 555 (715)
-+=||.+..-+++.| +.=.+....+...++....-..-+.||..+...++.++...++...-..
T Consensus 278 ~eERR~liEEAag~r-------~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e--------- 341 (1486)
T PRK04863 278 ANERRVHLEEALELR-------RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ--------- 341 (1486)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred hhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHh
Q 005076 556 KKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIV 635 (715)
Q Consensus 556 KkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~ 635 (715)
.+.+..++-......-+.|....+.....++.+..++..++.++...-..++++..=+.-...+.....-+...+.
T Consensus 342 ----e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~q 417 (1486)
T PRK04863 342 ----TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQ 417 (1486)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHh
Q 005076 636 AGAATAERS 644 (715)
Q Consensus 636 a~aArAEr~ 644 (715)
....+.+..
T Consensus 418 q~i~~Le~~ 426 (1486)
T PRK04863 418 QAVQALERA 426 (1486)
T ss_pred HHHHHHHHH
No 45
>PF13514 AAA_27: AAA domain
Probab=78.96 E-value=1.6e+02 Score=35.82 Aligned_cols=115 Identities=29% Similarity=0.295 Sum_probs=53.8
Q ss_pred hchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhh
Q 005076 230 EDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESL 309 (715)
Q Consensus 230 EDFe~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~l 309 (715)
+-||.|-+-.|.|++.--..-.-..-++............+..+-.-.=+++.+-+.+-..++.-..... ..+
T Consensus 526 ~~fe~a~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-------~p~ 598 (1111)
T PF13514_consen 526 EAFEAAVREADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG-------LPL 598 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCC
Confidence 4566666666666554333333333333333333333333333333333334444444444433322211 234
Q ss_pred cHHHHHHHHhhHhhh-------hhhhhhHHHHHhHHHHHHhhhhhhhhh
Q 005076 310 SSEEMEKWLASTEAL-------EGRKIELEIESHLVNEARAVLNNSIEH 351 (715)
Q Consensus 310 sskEme~W~ss~E~L-------E~KK~EleiEs~~v~eAr~~Ln~sIEh 351 (715)
+..+|-.|...-+.+ ....-+++--..-...++..|...+..
T Consensus 599 ~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 647 (1111)
T PF13514_consen 599 SPAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAA 647 (1111)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 569999998776544 333333333344455566666655543
No 46
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.81 E-value=1.3e+02 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhhhhhhh
Q 005076 516 AARASLQELSSTKSNIQQNIASFKQRIFFI 545 (715)
Q Consensus 516 ~AR~SLQElSS~ks~IQQ~IasfKQki~Fi 545 (715)
.....+..+..+...++.+|....++|.-+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445566666666677777777777777544
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.73 E-value=2.6e+02 Score=37.05 Aligned_cols=419 Identities=19% Similarity=0.211 Sum_probs=186.9
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
.-..+++.+-.+-+.|+.+..--++.+...|.+-.++...-.++-..|-=| ..++-=-.+++.-.+.+......++.+.
T Consensus 1190 ~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~-k~~E~~l~elq~k~~~~~~~~~~l~~q~ 1268 (1930)
T KOG0161|consen 1190 SLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD-KKLEAQLSELQLKLDEQERLRNDLTAKR 1268 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666677777777777777777777777776655555555444 3333333455555566666666666666
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhh---hhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHS---VEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAE 390 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhs---VEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAe 390 (715)
-..|....+.. ..--|.+...--++.....+..-|+++ ++..-|+|.-|+..=.-|-.|+..| ....|.++..
T Consensus 1269 ~~l~~E~~~l~-~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l---~e~leee~e~ 1344 (1930)
T KOG0161|consen 1269 SRLQNENEELS-RQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL---REQLEEEQEA 1344 (1930)
T ss_pred HHhhhhHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 66665544331 111111111111111222222222221 2222333333333222222222222 1222222221
Q ss_pred hcc---hHHHHHHHHHHHhhhhhhhhhh----hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhh----cccch-
Q 005076 391 NDS---NIRAVEERISIVVSDFQEYQSS----INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVD----RGTKL- 458 (715)
Q Consensus 391 Nd~---~I~aV~erIs~VVS~F~e~Qss----Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~----~gakL- 458 (715)
-+. .+..+.-.+..--..|.+.+.. ++---..++..+.......+.+..+-..+.+-...-.+ .-.++
T Consensus 1345 ~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1345 KNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 1111111111111222222211 11122233334444444444444444333333222111 11111
Q ss_pred --HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 005076 459 --KELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIA 536 (715)
Q Consensus 459 --Re~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~Ia 536 (715)
+..+.....-=+.+...+.-||+..--+..-++ +--.....+..+++.++.++...-..+-++-....+.|++|.
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld---~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~ 1501 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELD---AAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIE 1501 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222233444444444433322222111 122333445566677777777777777777778888888888
Q ss_pred HHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHH-HH---HHHhh
Q 005076 537 SFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIED-TI---NRLQE 612 (715)
Q Consensus 537 sfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~-t~---~~lqe 612 (715)
-++..+---.|++.+||..+|- +-.||.++|..|+-+..+|+.-|..+-. -+ ..=.+
T Consensus 1502 dl~~~~~e~~k~v~elek~~r~-------------------le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e 1562 (1930)
T KOG0161|consen 1502 DLEEQKDEGGKRVHELEKEKRR-------------------LEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE 1562 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 8888888888888888876653 3334444444444444444333322211 00 00012
Q ss_pred hhhhhhchhhHHHH---------HHHHHHHHhhhhhhhHHhhh--hhcCChHHHHHHHHHHHHhchHHHh-hhhccccc
Q 005076 613 IEGLISSKEKEVAM---------ARFQRLRIVAGAATAERSAA--LELGDLEEANLLLAEAEAAGQEAKK-LEEANLKE 679 (715)
Q Consensus 613 ~EgLI~~KEkE~Am---------a~~qrLrL~a~aArAEr~aA--~E~~D~EEa~lL~aEAeAAe~eA~~-Lk~y~~~~ 679 (715)
+|--|..|+.|.-+ .+|+-.+=...-+|+|+.+. -.-||..+-++-+..|..+..++.+ |+.|+-+.
T Consensus 1563 ~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~ 1641 (1930)
T KOG0161|consen 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQL 1641 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Confidence 33333333333222 22222111222334444333 2448888888888888888877754 22244443
No 48
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.19 E-value=1.2e+02 Score=32.97 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 005076 588 EMEKAVLELEKLEENIEDTINRLQ 611 (715)
Q Consensus 588 ~leka~~eLe~~E~~I~~t~~~lq 611 (715)
++..+..+|..++..+...-+.|.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444434433
No 49
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.13 E-value=48 Score=35.99 Aligned_cols=112 Identities=24% Similarity=0.315 Sum_probs=68.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhhhcCCh-------
Q 005076 580 VEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAATAERSAALELGDL------- 652 (715)
Q Consensus 580 ~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~E~~D~------- 652 (715)
.|++.+=..|+++....+.||.|+.+.+|-.+|. ..|+..=.--..|| --|++..+=-++.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl-----~~ERD~yk~K~~RL-------N~ELn~~L~g~~~rivDIDa 193 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL-----VTERDAYKCKAHRL-------NHELNYILNGDENRIVDIDA 193 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-------HHHHHHHhCCCCCCcccHHH
Confidence 7888888999999999999999999999888774 45676655556666 3455555522221
Q ss_pred ---------HHHHHHHHHHHHhchHHHhhhh-cccccccccCCCcccc------hhhHhhhhhHHHHHHHHHh
Q 005076 653 ---------EEANLLLAEAEAAGQEAKKLEE-ANLKEEEFTNLPEHFI------SMELVTNFGRKQLAELVAA 709 (715)
Q Consensus 653 ---------EEa~lL~aEAeAAe~eA~~Lk~-y~~~~ed~~~~~~~~i------~m~lvsn~~~k~L~Ela~s 709 (715)
|..+.+..|-.-+-+-..+.|+ ..=+ --+.+| +-.+++-++.+|+.++..+
T Consensus 194 Li~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k------~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~ 260 (319)
T PF09789_consen 194 LIMENRYLKERLKQLQEEKELLKQTINKYKSALERK------RKKGIIKLGNSASSNLTGVMSAKQVKELLES 260 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccccccCCCCCCcccccccHHHHHHHHhc
Confidence 2223334444444444444444 2111 112222 3446666778888887744
No 50
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=74.55 E-value=51 Score=31.77 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|...|..+++.+...-..+.+++.... .+..|+..+++.-.++|..-.+.+.++|..-...-
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~--------------~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~ 119 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLE--------------EAKEKAELIVETAKKEAYILTQKIEKQTKDDIENL 119 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655555544443322 46678888888888999999999999999999999
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHH
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEA 341 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eA 341 (715)
++.|.+..+ .|.++.-.++-.++++++
T Consensus 120 ~~~a~~~ie-~Ek~~a~~elk~eii~~~ 146 (167)
T PRK08475 120 IKSFEELME-FEVRKMEREVVEEVLNEL 146 (167)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999998876 455666666666666554
No 51
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=73.46 E-value=57 Score=27.82 Aligned_cols=121 Identities=23% Similarity=0.249 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh-hhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhc
Q 005076 501 EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRI-FFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLS 579 (715)
Q Consensus 501 Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki-~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~ 579 (715)
++|..-++.++.........++.+-+....++.+...+++.| .+++.-+--|+.+++..-.. |-.+.+
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~--------l~~~~~--- 71 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLED--------LEEQKE--- 71 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH---
Confidence 457777788888888888888888888888888888888877 34455555555555432111 000000
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHH
Q 005076 580 VEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRL 632 (715)
Q Consensus 580 ~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrL 632 (715)
.-...++..++.....+..+..-|..+-..|....+.-++.-+-.-..+|+.|
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 00123455555666666666666666666666666655555555666666654
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.96 E-value=89 Score=33.47 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=82.9
Q ss_pred hhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 005076 306 AESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE 385 (715)
Q Consensus 306 A~~lsskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE 385 (715)
|.-.+.+..-.|.+.. ++.=|-.++-....+..-...|+.-++-+ ..=+..|..+.+.|..|+..|-..+
T Consensus 126 aRl~ak~~WYeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l----~~~~~~l~~~~~~L~~e~~~L~~~~---- 195 (312)
T smart00787 126 ARLEAKKMWYEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELL----NSIKPKLRDRKDALEEELRQLKQLE---- 195 (312)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 3444556667887765 55444444433333333333333222211 1223456677888888887765544
Q ss_pred hhhhhhcch-HHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHh
Q 005076 386 KEIAENDSN-IRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARV 464 (715)
Q Consensus 386 ~EIAeNd~~-I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~ 464 (715)
.||..||.. +....++|..+-.....++. ++..+|..+..++..-++..-++.++-.=|...+. .+.+.=..
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~----~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~---~~~~~r~~ 268 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVK----KLEELEEELQELESKIEDLTNKKSELNTEIAEAEK---KLEQCRGF 268 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC
Confidence 577777754 45566777766554444433 34455555555555555555555555544444443 22233334
Q ss_pred cHHHHHHHHHHHHHHHH
Q 005076 465 SADEAKEYWEVVELRRS 481 (715)
Q Consensus 465 s~~EAk~~qe~V~lRr~ 481 (715)
+..|+..++..|..-.+
T Consensus 269 t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 269 TFKEIEKLKEQLKLLQS 285 (312)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45566666555554433
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.19 E-value=3e+02 Score=35.49 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=48.9
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHH
Q 005076 383 DKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELA 462 (715)
Q Consensus 383 ~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~ 462 (715)
+-+.+|..-.+....+-..+..+--.--+.|.+-..-|.......+||+.-.+.|..--..|-+||+....--...++++
T Consensus 1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA 1498 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVA 1498 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 33344444444444444444444444556666666667777777888888888888778888888886554444444444
No 54
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=72.14 E-value=3.9 Score=52.25 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=4.1
Q ss_pred ceecccCC
Q 005076 103 LRIGYGRD 110 (715)
Q Consensus 103 ~RIGYgR~ 110 (715)
+||--|+.
T Consensus 1766 ~Ri~GGh~ 1773 (2039)
T PRK15319 1766 ARFKAGKA 1773 (2039)
T ss_pred EEEecccc
Confidence 46654444
No 55
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=71.65 E-value=1.2e+02 Score=30.76 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=79.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-++|.+.|..+++-+...-..+.+++.. | -.+..|+..++++..++|..-...+..+|..=...
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~-------l-------~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~ 101 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEK-------N-------EELDQQREVLLTKAKEEAQAERQRLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776665555544332 2 24789999999999999999999999999999999
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 313 Eme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
.+++|....+. |..+.--++..++++-|-..-...|.+.+
T Consensus 102 ~~~~a~~~ie~-E~~~a~~~l~~ei~~la~~~A~kil~~~~ 141 (246)
T TIGR03321 102 IREKWQEALRR-EQAALSDELRRRTGAEVFAIARKVLTDLA 141 (246)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987764 66666667777777776666666666655
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.60 E-value=19 Score=41.38 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhchHHHhhhh-cccccccc
Q 005076 654 EANLLLAEAEAAGQEAKKLEE-ANLKEEEF 682 (715)
Q Consensus 654 Ea~lL~aEAeAAe~eA~~Lk~-y~~~~ed~ 682 (715)
|..-|.++..-++.....||. |+=+--+|
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888 76554444
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=70.54 E-value=1e+02 Score=32.43 Aligned_cols=58 Identities=33% Similarity=0.371 Sum_probs=51.3
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH
Q 005076 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIV 405 (715)
Q Consensus 348 sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~V 405 (715)
++...+..-+-|++-+.+.-.-+..|+++|=..|++-|.+|.+-..+|+-.++++++|
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v 85 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777777888899999999999999999999999999999999999999999999443
No 58
>PRK09039 hypothetical protein; Validated
Probab=70.40 E-value=63 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=15.5
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 578 LSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEI 613 (715)
Q Consensus 578 L~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~ 613 (715)
|+.+.+.|...+......|..+|....+.-.+|...
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 59
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.32 E-value=2.1e+02 Score=32.91 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=6.2
Q ss_pred hHHHHHHHhhhhhH
Q 005076 269 KMYDVLVSQIAAEQ 282 (715)
Q Consensus 269 kmq~vL~s~IaaEE 282 (715)
++-.-+..|+..|.
T Consensus 300 ~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 300 NLLDSTKAQLQKEE 313 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 60
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.27 E-value=14 Score=40.62 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccc
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVE 581 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~E 581 (715)
..+.+++.|++++...+..+. .+|..++.+++++-|++...+-..+.-+-++ ..+-...+.+.+-+..+..+
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELR-------DLEDRGDALKALAKFLEDIREGLTEPIKDSA-KRNEPDLKEWFQAFDFNGSE 139 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhcccccccc-ccCCCCHHHHHHHHHHHHHH
Confidence 455567777766666665554 4566777777888888887654322211100 01111233455555555556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 582 KDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 582 Ke~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
..+++..+..+...+++++++|...-++|..+.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666777777777777666666665554
No 61
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.41 E-value=1.3e+02 Score=29.85 Aligned_cols=93 Identities=19% Similarity=0.395 Sum_probs=61.2
Q ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcc
Q 005076 376 KLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRG 455 (715)
Q Consensus 376 ~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~g 455 (715)
+.+.+=..-|.|+.+-...+...+.||..--.......-.++.+-..|.....+++.....|--++++++..+.. ..
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~---~~ 137 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEE---QQ 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344444455666666666677777777655444444445555555555555566666666677777777776654 44
Q ss_pred cchHHHHHhcHHHHHH
Q 005076 456 TKLKELARVSADEAKE 471 (715)
Q Consensus 456 akLRe~~~~s~~EAk~ 471 (715)
.+|-.+++.+.+|||.
T Consensus 138 ~~Le~iAglT~eEAk~ 153 (201)
T PF12072_consen 138 QELEEIAGLTAEEAKE 153 (201)
T ss_pred HHHHHHhCCCHHHHHH
Confidence 5699999999999985
No 62
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=66.90 E-value=70 Score=38.81 Aligned_cols=115 Identities=20% Similarity=0.146 Sum_probs=86.0
Q ss_pred HHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 005076 426 IISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSA 505 (715)
Q Consensus 426 ~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~ 505 (715)
....+..|-..|.--|.+|.....+.++ .+.+.-+..-+++..||+|.++.+++| ..-
T Consensus 137 e~~~v~~eR~~L~~e~~~in~~~~~~e~----------ls~~~~~~ld~I~~~RReLf~~~l~~~------------~~i 194 (835)
T COG3264 137 EQFEVTQERDALQAEKAYINALEGQAEQ----------LTAEVRDILDQILDTRRELLNSLLSQR------------EAI 194 (835)
T ss_pred chhHHHHHHHHHhhhHHHHHHHhcchhh----------hCHHHHHHHHHHHHHHHHHHHHHHhhc------------ccc
Confidence 3445666667777777777776665544 344555566689999999999999999 334
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHH
Q 005076 506 EVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAAR 570 (715)
Q Consensus 506 dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaR 570 (715)
+.|+.+++++++...|+.++-..+. ==+..|.-|+.|-|-+.-..-..+=.|...++
T Consensus 195 s~~l~~~q~~~~~d~l~~~~~~~~f--------W~~~~w~~~~~~~l~~~f~~~~~al~~~~~~~ 251 (835)
T COG3264 195 SLQLNQQQLSAASDELRSLLHQQSF--------WVSFAWPKAFPQALRALFSSITFALLLLVGGM 251 (835)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHH
Confidence 5789999999999999988755433 22378888899999888888888777777653
No 63
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.27 E-value=3.7e+02 Score=34.36 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=99.3
Q ss_pred hhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHH
Q 005076 345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQ 424 (715)
Q Consensus 345 Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lq 424 (715)
++...+.-...-+++-+.+..+.+.+.+||..++.-|-....|+.---+.+.-.-.+-+.++..|.+.|+++...-.+++
T Consensus 459 ~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~ 538 (1293)
T KOG0996|consen 459 EERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLK 538 (1293)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556666777777778888888888888777777777777777777778888888877777776666666
Q ss_pred HHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 005076 425 SIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLS 504 (715)
Q Consensus 425 s~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~ 504 (715)
+....++--.+.|...|.|++. ..+.| -.+.+++..+.
T Consensus 539 e~~~~l~~~k~~l~~~k~e~~~-------------------------------~~k~l-----------~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 539 EKKTELDDLKEELPSLKQELKE-------------------------------KEKEL-----------PKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------------------------------HHHhH-----------HHHHHHHHHHH
Confidence 6555555444444444433321 11111 13556777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 005076 505 AEVQTLQQEASAARASLQELSSTKSNIQ 532 (715)
Q Consensus 505 ~dvQ~lrQevS~AR~SLQElSS~ks~IQ 532 (715)
...+.+||.+-.++.++|.-+|+--.++
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 8999999999999999999888765444
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=65.82 E-value=2 Score=50.62 Aligned_cols=206 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhh------hchHHHHHHh---
Q 005076 169 RFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEA------EDFEAAQRIS--- 239 (715)
Q Consensus 169 rl~~lrsqIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eLEeACEa------EDFe~AeriS--- 239 (715)
.++.-++.+..-++.+..-.-++..+|-.+=+.+++.-..++-...++.+.++.+-+.-.. |-.+....+.
T Consensus 149 ~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e 228 (859)
T PF01576_consen 149 KLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAE 228 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666667777666666666666666666666566666666666666655443211 1001000000
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHHHHHHHh
Q 005076 240 DLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLA 319 (715)
Q Consensus 240 dsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskEme~W~s 319 (715)
..+..+.+.+..|-.-|.++...+|.-...-..+-..--..+.|+..|-+++--... +-..+.+.-+-..-||..|.+
T Consensus 229 ~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e--~k~~l~~qlsk~~~El~~~k~ 306 (859)
T PF01576_consen 229 SQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEE--AKSELERQLSKLNAELEQWKK 306 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhHHHHHHH
Confidence 112333344444444444444444443222222222223445566666666533222 222233333445678999987
Q ss_pred hHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhh---hhhhhhHHHHHhhhhhhHHHHHHHHHHHHH
Q 005076 320 STEALEGRKIELEIESHLVNEARAVLNNSIEHS---VEDDLREKEILYKKKDILTNELQKLLALVR 382 (715)
Q Consensus 320 s~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhs---VEdDkrEKeiL~KkkdvL~~ELe~LL~lVr 382 (715)
..+.--.-++ .-+.++|-.|+.-|..+ ++.-..-..-|-|.+.-|+.|+++|.--|-
T Consensus 307 K~e~e~~~~~------EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 307 KYEEEAEQRT------EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654322222 22456777777766544 445555666777888889999998875443
No 65
>PRK12704 phosphodiesterase; Provisional
Probab=61.69 E-value=2.4e+02 Score=32.30 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=39.2
Q ss_pred hhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHH
Q 005076 410 QEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471 (715)
Q Consensus 410 ~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~ 471 (715)
...+..++.+-..|......+....+.|.-+++++++.+... -.+|-.+++.+.+|||.
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~---~~~l~~~a~lt~~ea~~ 157 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ---LQELERISGLTAEEAKE 157 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHH
Confidence 333444555555555555556666666666777777666544 34799999999999985
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.51 E-value=4.7e+02 Score=33.61 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=27.0
Q ss_pred HHHHHhhhhccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005076 570 RLAAEAKSLSVEKDG---LQQEMEKAVLELEKLEENIEDTINRLQEIEGLI 617 (715)
Q Consensus 570 RiAAEAKaL~~EKe~---~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI 617 (715)
+++.-.+.|+-||+. ++.-+-+.+.+++-|-.+...+.+++...+|.-
T Consensus 701 ~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~ 751 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSK 751 (1317)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhH
Confidence 444444555555543 333444466666666666666666666666654
No 67
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.37 E-value=28 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
.|.+.|-++..-|..||+++...-.++.+++.+.....+++.++++++.
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888899999999999999999999999999999999999998874
No 68
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.83 E-value=2.2e+02 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005076 583 DGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLIS 618 (715)
Q Consensus 583 e~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~ 618 (715)
..++..+..+...+..++.++..|+-+ .-+.|.|.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~~~~i~-AP~dG~V~ 283 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQRLIIR-SPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcEEE-CCCCcEEE
Confidence 334555566666666666555543221 23467765
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.16 E-value=4.9e+02 Score=33.38 Aligned_cols=124 Identities=25% Similarity=0.253 Sum_probs=72.5
Q ss_pred hhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhh----
Q 005076 414 SSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKS---- 489 (715)
Q Consensus 414 ssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKS---- 489 (715)
..+.-++.++++.+.++..+-|..+.++.++.+.. ++.+..+.-|..|-..|.+..+-=++-+.-|+.+
T Consensus 401 vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p-------e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~ 473 (1293)
T KOG0996|consen 401 VKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAP-------EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQE 473 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc-------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667788888888888888888888877776554 3445555555555555555443333323333322
Q ss_pred ----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhh
Q 005076 490 ----REDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFF 544 (715)
Q Consensus 490 ----rEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~F 544 (715)
|+....+-+.=..++.+++..+-++..|+.-|.-|.++....+-...++|-+|.=
T Consensus 474 t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 474 TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333445566666666666666666666666666666666665543
No 70
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.71 E-value=1.7e+02 Score=27.91 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=13.3
Q ss_pred chhhHHHHHHhhhhhhHHhhhhhHHHhHhhh
Q 005076 419 KYDSLQSIISQLNLESEAMSMKKKEIDKFLN 449 (715)
Q Consensus 419 k~~~Lqs~lsq~~letEaL~~KkkeID~fl~ 449 (715)
++...+..+++++.+...+..+-.+....+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 71
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.64 E-value=3.1e+02 Score=30.82 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=18.8
Q ss_pred HHHHHHHHhhh-hhhhHHHHHHHhhhhcHHHHHHHH
Q 005076 284 CASLLDHFSAD-ASNSADTFLKKAESLSSEEMEKWL 318 (715)
Q Consensus 284 ~A~LL~~Fakd-A~~~A~~~~k~A~~lsskEme~W~ 318 (715)
.-.+|+-||.| |.+.|-..++++-.=-.-+++++.
T Consensus 302 ~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yL 337 (365)
T KOG2391|consen 302 YKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYL 337 (365)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHH
Confidence 34556777765 455566666655443334444443
No 72
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.31 E-value=3.6e+02 Score=31.59 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHh
Q 005076 385 EKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARV 464 (715)
Q Consensus 385 E~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~ 464 (715)
+.|+.+....|+.+...|..+-..-+..+.++......+.........--+.+.+|++=+|=....++.. .+|..++..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni-~kL~~~v~~ 405 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI-AKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhh
Q 005076 465 SADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFF 544 (715)
Q Consensus 465 s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~F 544 (715)
+...-...+.--+--|. -.|-+-|.=|......+.+..+-+ +++-..|...+++..---.-.+.+..++..+-=
T Consensus 406 s~~rl~~L~~qWe~~R~--pL~~e~r~lk~~~~~~~~e~~~~~----~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRA--PLIEEYRRLKEKASNRESESKQKL----QEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 545 IDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEI 613 (715)
Q Consensus 545 idkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~ 613 (715)
..|.++.---=+++---..|.+-= ..++.|.-.|-..|.++|+....+|..+
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQ-----------------k~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQ-----------------KEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.19 E-value=4.8e+02 Score=32.97 Aligned_cols=66 Identities=29% Similarity=0.448 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------hhhhhHHHHHHHHhhhhhhhhccCcchhhhh--hHHHHHHchHHH
Q 005076 503 LSAEVQTLQQEASAARASLQELS-------STKSNIQQNIASFKQRIFFIDKRVPDLEAEK--KVAAAARNFKEA 568 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElS-------S~ks~IQQ~IasfKQki~Fidkr~peLEAEK--kvAaaaRnFKEA 568 (715)
|..+|..++.++..-|..+|++- -.+..|+-.|.+.+-+|.|+-.-+-.|.+=| ||-+--.|+-+.
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~l 480 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQL 480 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 34455555555555555555543 3455677777777777777776555555544 233333444443
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.44 E-value=84 Score=31.94 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQR 541 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQk 541 (715)
+.++++.++++...++.++ ..+++.+|+.++..++.
T Consensus 98 le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHH
Confidence 3345555555555555443 35666667666665544
No 75
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=57.29 E-value=1.9e+02 Score=27.98 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=13.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005076 581 EKDGLQQEMEKAVLELEKLEENIEDTINRL 610 (715)
Q Consensus 581 EKe~~~~~leka~~eLe~~E~~I~~t~~~l 610 (715)
|.+.++...+.|..+++.+-+.|+.-+.+.
T Consensus 171 ei~~~~~~~~~~~~~~~~is~~~k~E~~rf 200 (236)
T PF09325_consen 171 EIEEAERRVEQAKDEFEEISENIKKELERF 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.91 E-value=2.5e+02 Score=35.17 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 507 VQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 507 vQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
.++|+|-.++|+-..|= .||+=..||+++.
T Consensus 422 ~~~l~~~~~d~~dAy~w-------lrenr~~FK~~vy 451 (1072)
T KOG0979|consen 422 YRVLRQGSSDAYDAYQW-------LRENRSEFKDEVY 451 (1072)
T ss_pred HHHhccCchHHHHHHHH-------HHHCHHHhccccc
Confidence 77777777777776664 5788888998863
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.70 E-value=3.6e+02 Score=30.73 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHhh---hhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHH
Q 005076 214 LRHSQLEKQLDEAC---EAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDH 290 (715)
Q Consensus 214 ~~h~~LE~eLEeAC---EaEDFe~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~ 290 (715)
..-.++|..|.+|- ..=.|-.|.+.-+ .+-..|..++..++.|=..|++.+.+.=.--++-..|...
T Consensus 79 ~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~----------~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~ 148 (569)
T PRK04778 79 NSLPDIEEQLFEAEELNDKFRFRKAKHEIN----------EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL 148 (569)
T ss_pred hhhhhHHHHHHHHHHHHhcccHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665443 3344555544433 3445677888999999999999999887777777777777
Q ss_pred Hh---hhhhhhH-------HHHHHHhhhhc--HHHHHHHHhhHhhhhhhhhhHHHHHhH
Q 005076 291 FS---ADASNSA-------DTFLKKAESLS--SEEMEKWLASTEALEGRKIELEIESHL 337 (715)
Q Consensus 291 Fa---kdA~~~A-------~~~~k~A~~ls--skEme~W~ss~E~LE~KK~EleiEs~~ 337 (715)
|. |+..++. +.+.++-..+- -..++.|.++..-++.+.+=..++.++
T Consensus 149 y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~ 207 (569)
T PRK04778 149 YRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEEL 207 (569)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 65 3333322 22223222222 246778888888888777666555543
No 78
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.50 E-value=3.9e+02 Score=31.02 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=64.5
Q ss_pred HHHhHHHHHHhhhhhhhhhhhhhhhhHH-HHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhh
Q 005076 333 IESHLVNEARAVLNNSIEHSVEDDLREK-EILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQE 411 (715)
Q Consensus 333 iEs~~v~eAr~~Ln~sIEhsVEdDkrEK-eiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e 411 (715)
+++.==..|..-+|..++--++.-...| +...+-.+.|.+.|.+|=.-+...|.++..--.. +.+++. +
T Consensus 161 ~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~--------~~l~~~--~ 230 (754)
T TIGR01005 161 FRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ--------SDLLMG--N 230 (754)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCccc--C
Confidence 3343344566666666666665443332 2334556778888888877777777776654332 223332 3
Q ss_pred hhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhh
Q 005076 412 YQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLND 450 (715)
Q Consensus 412 ~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ 450 (715)
.+.-.+.+++.|...++....+..+....-+.+.+.+..
T Consensus 231 ~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 231 NATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445778888888888777777766666666665543
No 79
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.36 E-value=2.1e+02 Score=28.02 Aligned_cols=139 Identities=21% Similarity=0.331 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchh
Q 005076 474 EVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLE 553 (715)
Q Consensus 474 e~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLE 553 (715)
.+..+-++-+..++..-||-. .-|-+-|.-++.++..++.++..+-+.+..+++.+......+.=..++.
T Consensus 5 Rl~~~~~a~~~~~ld~~EDP~------~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---- 74 (221)
T PF04012_consen 5 RLKTLVKANINELLDKAEDPE------KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---- 74 (221)
T ss_pred HHHHHHHHHHHHHHHhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344555666677777666654 4566778888899999999999999999999999988888776443321
Q ss_pred hhhhHHHHHHchHHHHHHHHHhh-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHH
Q 005076 554 AEKKVAAAARNFKEAARLAAEAK-SLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQR 631 (715)
Q Consensus 554 AEKkvAaaaRnFKEAaRiAAEAK-aL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qr 631 (715)
..|-..+-.+.||-|..-| .+....+.++..++.+.....+|...|...-.+|++... +++..++++.+
T Consensus 75 ----~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~-----k~~~l~ar~~~ 144 (221)
T PF04012_consen 75 ----ELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS-----KREELKARENA 144 (221)
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2233445666666666554 556777888888899999888888888888888877642 44555555553
No 80
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.21 E-value=4.6e+02 Score=31.84 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhh--hccCcchhhhhh
Q 005076 481 SLMSSILKSREDKVKLAKTE-EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFI--DKRVPDLEAEKK 557 (715)
Q Consensus 481 ~l~ssIlKSrEdk~~L~k~E-Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fi--dkr~peLEAEKk 557 (715)
+-|..+.++=+-++..+.+| +.+..-|..|.-++..-|..-+|+..+--.+|.++.+.++.-... ....+.+--||-
T Consensus 655 ~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~E 734 (769)
T PF05911_consen 655 KAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKE 734 (769)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHH
Confidence 34445555555566655555 346678889999999999999999999999999999988754322 366778888999
Q ss_pred HHHHHHchHHH
Q 005076 558 VAAAARNFKEA 568 (715)
Q Consensus 558 vAaaaRnFKEA 568 (715)
+|+||..|-|.
T Consensus 735 iaaAA~KLAEC 745 (769)
T PF05911_consen 735 IAAAAEKLAEC 745 (769)
T ss_pred HHHHHHHHHHH
Confidence 99999888776
No 81
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.38 E-value=1.6e+02 Score=32.02 Aligned_cols=46 Identities=35% Similarity=0.588 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhc
Q 005076 501 EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDK 547 (715)
Q Consensus 501 Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidk 547 (715)
.+|..-+..|+++...|.++|+.|..++..|+.+|. .|+.-.|||.
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~-~K~~sL~iD~ 372 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA-VKNNSLFIDR 372 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH
Confidence 345666788999999999999999999999999996 7999999997
No 82
>PHA03247 large tegument protein UL36; Provisional
Probab=54.28 E-value=47 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.5
Q ss_pred cccCCCCCCCCCCCCCC
Q 005076 106 GYGRDTTPHSSSAPDDD 122 (715)
Q Consensus 106 GYgR~~~p~~pspp~~~ 122 (715)
.+||.++|.+|.||.++
T Consensus 2726 ~s~r~asP~~PlpPa~p 2742 (3151)
T PHA03247 2726 AAARQASPALPAAPAPP 2742 (3151)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 57787776666554443
No 83
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=54.14 E-value=1.8e+02 Score=26.89 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=76.9
Q ss_pred HHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhh
Q 005076 244 AAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEA 323 (715)
Q Consensus 244 a~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskEme~W~ss~E~ 323 (715)
.+++-++.+...|.+|+....-....+.+.=..--.+..|+..+++.--.+|..-.+.+..+|..-...-+++|...-+
T Consensus 32 ~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~- 110 (156)
T PRK05759 32 ALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIE- 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555555666666666666666666665566667778888888888888888888888888888888887776554
Q ss_pred hhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 324 LEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 324 LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
.+..+...++..+++.-|..-....+.+.+
T Consensus 111 ~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~ 140 (156)
T PRK05759 111 QERKRAREELRKQVADLAVAGAEKILGREL 140 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 456677778888888877777766666665
No 84
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.08 E-value=2.1e+02 Score=27.51 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=68.8
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|.++|..+++-+...-..+.+++.. --.++.|+...+++.-++|......+..+|..-...-
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~--------------L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~ 115 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAEAILRKNREL--------------LAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKM 115 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555555555544443 3456777888888888888888888888888888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
+++|...-+. +..+.--++..++++-|-.-....|.+.+
T Consensus 116 ~~~a~~~I~~-e~~~a~~~l~~~i~~lA~~~a~kil~~~l 154 (175)
T PRK14472 116 IASAKEEIEQ-EKRRALDVLRNEVADLAVKGAEKIIRTSL 154 (175)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8888876553 45555556666666665555555555544
No 85
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.74 E-value=2.9e+02 Score=29.02 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=33.8
Q ss_pred hhHHHhHhhhhhhhcccchHHH-HHhcHHHHHHHHHHHHHHHHHHHH
Q 005076 440 KKKEIDKFLNDEVDRGTKLKEL-ARVSADEAKEYWEVVELRRSLMSS 485 (715)
Q Consensus 440 KkkeID~fl~~ee~~gakLRe~-~~~s~~EAk~~qe~V~lRr~l~ss 485 (715)
-|.|+++| .++|-.++|.+ +..+..-...|++++..|++++.|
T Consensus 200 ~k~e~~Rf---~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl~~ 243 (243)
T cd07666 200 LKADWERW---KQNMQTDLRSAFTDMAENNISYYEECLATWESFLHS 243 (243)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34899999 45677788874 566777788888999999998765
No 86
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.70 E-value=44 Score=30.09 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=39.4
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh
Q 005076 492 DKVKLAKTE-EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRI 542 (715)
Q Consensus 492 dk~~L~k~E-Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki 542 (715)
|-|.|+.|| |+|.+.-+.|+|++++|+.+--.|-+.-..++++-.....||
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899998 678888889999999998887777777666666665555554
No 87
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=52.67 E-value=2.1e+02 Score=27.01 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=73.8
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|..+|..+++.+......+.++ =..--.+..|+..+++..-++|....+.+..+|..=..+-
T Consensus 37 R~~~I~~~l~~A~~~~~eA~~~~~e~--------------~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~ 102 (159)
T PRK13461 37 RQSEIDNKIEKADEDQKKARELKLKN--------------ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLI 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444444433 3333456788888888888899988999999999888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVE 354 (715)
++.|...-+ .+..+.--++..++++-|-......|.+.+-
T Consensus 103 ~~~a~~~i~-~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~ 142 (159)
T PRK13461 103 IERAKLEAQ-REKEKAEYEIKNQAVDLAVLLSSKALEESID 142 (159)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence 999988775 4666677777777777777666666666663
No 88
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=52.05 E-value=1.4e+02 Score=31.29 Aligned_cols=108 Identities=21% Similarity=0.180 Sum_probs=71.8
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHH----HHHHHhh--hhhhhhhcchHHHHHHHHHHHhhhh
Q 005076 336 HLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKL----LALVRDK--EKEIAENDSNIRAVEERISIVVSDF 409 (715)
Q Consensus 336 ~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~L----L~lVr~K--E~EIAeNd~~I~aV~erIs~VVS~F 409 (715)
.++..|.-.+-.-|+.-+++|.++---..|+=|..++++.-- +.+=|-| |.+.++++.++.... ..|
T Consensus 83 ~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sR-------r~F 155 (215)
T cd07632 83 ELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSR-------RKQ 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHH-------HHH
Confidence 677888888888899999999999888888888888886543 3444556 556666665554433 347
Q ss_pred hhhhhhhhhchhhHHHH-------------HHhhhhhhHHhhhhhHHHhHhhhh
Q 005076 410 QEYQSSINAKYDSLQSI-------------ISQLNLESEAMSMKKKEIDKFLND 450 (715)
Q Consensus 410 ~e~QssId~k~~~Lqs~-------------lsq~~letEaL~~KkkeID~fl~~ 450 (715)
|..=.+-=.++|.||+. .+++.-=-.+-.+-.+..|.||+.
T Consensus 156 ~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~ 209 (215)
T cd07632 156 HLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSS 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666677777753 222222234445556677777765
No 89
>PRK00106 hypothetical protein; Provisional
Probab=51.71 E-value=4.3e+02 Score=30.74 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=32.8
Q ss_pred hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHH
Q 005076 416 INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471 (715)
Q Consensus 416 Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~ 471 (715)
++.+-..|......++...+.|.-++++++..+... -.+|-.+++.+.+|||.
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~---~~~Le~~a~lt~~eak~ 172 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQK---KAELERVAALSQAEARE 172 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHH
Confidence 333444444444444555555556666666655443 34899999999999985
No 90
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.54 E-value=1.8e+02 Score=34.60 Aligned_cols=138 Identities=23% Similarity=0.258 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHH
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTK-------SNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAE 574 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~k-------s~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAE 574 (715)
+|..||+.||-++...|..=|||.+.- -.+..++..+|+..--...++-.|..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~-------------------- 481 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ-------------------- 481 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 466666667766666666666666653 34445555555554433322222211
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhhhcCChHH
Q 005076 575 AKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAATAERSAALELGDLEE 654 (715)
Q Consensus 575 AKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~E~~D~EE 654 (715)
..++=...++.+|+.+.+-...=+.+|. .++--+=.|..-...|||+=-.|+.-.+ |-
T Consensus 482 -------------aRq~DKq~l~~LEkrL~eE~~~R~~lEk-------QL~eErk~r~~ee~~aar~~~~~~~~r~--e~ 539 (697)
T PF09726_consen 482 -------------ARQQDKQSLQQLEKRLAEERRQRASLEK-------QLQEERKARKEEEEKAARALAQAQATRQ--EC 539 (697)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHhhhhccccchhccc--hh
Confidence 1112223455666666666665555543 3333333344433444544222233223 44
Q ss_pred HHHHHHHHHHhchHHHhhhh-ccccccc
Q 005076 655 ANLLLAEAEAAGQEAKKLEE-ANLKEEE 681 (715)
Q Consensus 655 a~lL~aEAeAAe~eA~~Lk~-y~~~~ed 681 (715)
++.++.-...-|.|.++|+. ..-++|.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555 4444443
No 91
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=51.46 E-value=96 Score=28.75 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=18.9
Q ss_pred hhhchhhHHHHHHhhhhhhHHhh
Q 005076 416 INAKYDSLQSIISQLNLESEAMS 438 (715)
Q Consensus 416 Id~k~~~Lqs~lsq~~letEaL~ 438 (715)
-++=+..||...++.+.+++.|.
T Consensus 94 ~~~l~~~L~~~~~e~eeeSe~la 116 (150)
T PF07200_consen 94 PDALLARLQAAASEAEEESEELA 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999983
No 92
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=51.29 E-value=2e+02 Score=32.49 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhhhh-hhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccch---------hhhHHHHHHHHHHHHHH
Q 005076 530 NIQQNIASFKQRIF-FIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEK---------DGLQQEMEKAVLELEKL 599 (715)
Q Consensus 530 ~IQQ~IasfKQki~-Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EK---------e~~~~~leka~~eLe~~ 599 (715)
.++..|..+|-+|. +|++..++. ..++..+.-+....++|..|. +.+...+..+..+++.+
T Consensus 18 ~L~~~i~~~k~eV~~~I~~~y~df---------~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L 88 (593)
T PF06248_consen 18 RLSRRIEELKEEVHSMINKKYSDF---------SPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQEL 88 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 33344444444443 566555533 345555555555556555555 45677888888999998
Q ss_pred HHHHHHHHHHHhhhhhh
Q 005076 600 EENIEDTINRLQEIEGL 616 (715)
Q Consensus 600 E~~I~~t~~~lqe~EgL 616 (715)
..++.....-+.-.++|
T Consensus 89 ~~eL~~~~~~l~~L~~L 105 (593)
T PF06248_consen 89 KRELEENEQLLEVLEQL 105 (593)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888766555555554
No 93
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.93 E-value=50 Score=31.43 Aligned_cols=124 Identities=27% Similarity=0.399 Sum_probs=75.0
Q ss_pred HHHHHHH--HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcch---hhhhhHHHHHHc-hHHHHHHHHHhhhhccc
Q 005076 508 QTLQQEA--SAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDL---EAEKKVAAAARN-FKEAARLAAEAKSLSVE 581 (715)
Q Consensus 508 Q~lrQev--S~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peL---EAEKkvAaaaRn-FKEAaRiAAEAKaL~~E 581 (715)
+.|..++ +.+.-.|-.|.....-+..++ =||+|.|+.-...+. |--..+-..... =.+-..+..+.|.|..|
T Consensus 24 ~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~--GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 24 DNLHNKVGKTAVQKALDSLVEEGKIVEKEY--GKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHhhccHHHHHHHHHHHHhCCCeeeeee--cceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 334445666666555554443 489999998766442 111122222222 23456677777777777
Q ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhh---hhhhchhhHHHHHHHHHHH
Q 005076 582 KDGLQQEM--EKAVLELEKLEENIEDTINRLQEIE---GLISSKEKEVAMARFQRLR 633 (715)
Q Consensus 582 Ke~~~~~l--eka~~eLe~~E~~I~~t~~~lqe~E---gLI~~KEkE~Ama~~qrLr 633 (715)
...+...+ +.....+..++.+|...-.+|+... ..|.-.|++-+...|.+++
T Consensus 102 L~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 102 LASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWR 158 (169)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 77776655 4455666777777777777776654 3566778888888888765
No 94
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.86 E-value=2.6e+02 Score=27.13 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=72.3
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-+.|+++|..+++-+...-..+.+++. .--.+..++..++....+.|....+.+..+|+.=...
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~--------------~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~ 120 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARA--------------RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLER 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777776665555555544 2234678888888888888888888899999888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 313 Eme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
-+++|...-+. |..+..-++..++++-|-..-...|.+.+
T Consensus 121 ~~~~a~~~ie~-Ek~~a~~~l~~ei~~lav~~A~kil~~~l 160 (184)
T CHL00019 121 LENYKNETIRF-EQQRAINQVRQQVFQLALQRALGTLNSCL 160 (184)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 88888876653 44455555555555555555555555555
No 95
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=48.71 E-value=98 Score=24.75 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 005076 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432 (715)
Q Consensus 372 ~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~l 432 (715)
.+++.++.-.+.-+.+|.....+|..|.+.-..++..-+..-..|..+++.|+..-..+..
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777777777666666666666666666666555543
No 96
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=48.53 E-value=2.4e+02 Score=26.66 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=61.0
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-++|.+.|..+++-+...-..+.+.+.... .+..|+...+..--.+|.........+|+.-...
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~--------------~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~ 104 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLK--------------EARAERDAILKEAREIKEKMIADAKEEAQVEGDK 104 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888777777776666665554333 3455566666665666666666666666666666
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 313 Eme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
.+++|...-+ .+..+.--++.++.+.-|-.-....|.+.+
T Consensus 105 ~~~~a~~~i~-~ek~~a~~~l~~~i~~la~~~a~kil~~~l 144 (164)
T PRK14471 105 MIEQAKASIE-SEKNAAMAEIKNQVANLSVEIAEKVLRKEL 144 (164)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666665433 234444444555555444444444444433
No 97
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=48.03 E-value=2.4e+02 Score=26.34 Aligned_cols=153 Identities=20% Similarity=0.328 Sum_probs=87.1
Q ss_pred hhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhh
Q 005076 343 AVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDS 422 (715)
Q Consensus 343 ~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~ 422 (715)
+.||-+||-+=--+ .-+-=.|+.+|+.+|-.-++.-=.+|.. .|..+...+..++..++.....++.-.+.
T Consensus 59 LalNAsIEAaraGe------~G~gF~vvA~eir~LA~~t~~~~~~I~~---~i~~i~~~~~~~~~~~~~~~~~i~~~~~~ 129 (213)
T PF00015_consen 59 LALNASIEAARAGE------AGRGFAVVADEIRKLAEQTSESAKEISE---IIEEIQEQISQVVESMEESREQIEEGSES 129 (213)
T ss_dssp HHHHHHHHHHHTCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhcc------cchhHHHHHHHHHHhhhhhhhHHHHHHH---HHhhhhhhhhhhhhhhhcchhhhhhhccc
Confidence 56777777542211 1122368889998888887766555543 57777777777776666665555443333
Q ss_pred HHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 005076 423 LQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEK 502 (715)
Q Consensus 423 Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEe 502 (715)
+.... +.+..+...-+.-...+.++......-+..++++..-- ..
T Consensus 130 ~~~~~--------------~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i---------------------~~ 174 (213)
T PF00015_consen 130 VEETS--------------ESLEEIAESVEEISDSIEEISESAEEQSESIEQINESI---------------------EE 174 (213)
T ss_dssp HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred chhcc--------------hhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHH---------------------HH
Confidence 32222 22334444444455566677777777776666655221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFK 539 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfK 539 (715)
+..-++..-+.+.....+...|...-..|+..+..||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 175 ISEISEQISASSEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333344455555666666666666777766665
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.89 E-value=3.7e+02 Score=28.54 Aligned_cols=130 Identities=24% Similarity=0.287 Sum_probs=65.0
Q ss_pred hhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 005076 306 AESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE 385 (715)
Q Consensus 306 A~~lsskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE 385 (715)
|.-.+.+..-.|.+. .++.-+-.|+-....+..-...|...++-+- .-...+..+.+.|+.|+..|=+.+.
T Consensus 131 aRl~aK~~WYeWR~~--ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~----~~~~~l~~~~~~L~~e~~~Lk~~~~--- 201 (325)
T PF08317_consen 131 ARLEAKKMWYEWRMQ--LLEGLKEGLEENLELLQEDYAKLDKQLEQLD----ELLPKLRERKAELEEELENLKQLVE--- 201 (325)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 344455566778744 3344444444333333333333333322221 1233455667777777776655543
Q ss_pred hhhhhhcc-hHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhh
Q 005076 386 KEIAENDS-NIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLN 449 (715)
Q Consensus 386 ~EIAeNd~-~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~ 449 (715)
||..+|. .+.+...+|..+-......+ .++..|+..+..++...+.+..++.+.-.=|.
T Consensus 202 -e~~~~D~~eL~~lr~eL~~~~~~i~~~k----~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 202 -EIESCDQEELEALRQELAEQKEEIEAKK----KELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred -hhhhcCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665553 45555566655544443333 24455566666666555555555554443333
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=46.94 E-value=3.2e+02 Score=27.60 Aligned_cols=168 Identities=17% Similarity=0.289 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhch-------hhHHHHHHhhhhhhHHhhhhhHHHh
Q 005076 373 ELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKY-------DSLQSIISQLNLESEAMSMKKKEID 445 (715)
Q Consensus 373 ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~-------~~Lqs~lsq~~letEaL~~KkkeID 445 (715)
+|.-.|.-+..+=.++.-=|--++.++.|=...+.+|.+.++.+.--+ ..|+..+-+....--++..+-++.|
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433333333334433455688999999999999999999886443 4455666666666666777777777
Q ss_pred HhhhhhhhcccchHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 005076 446 KFLNDEVDRGTKLKELAR--VSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQE 523 (715)
Q Consensus 446 ~fl~~ee~~gakLRe~~~--~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQE 523 (715)
.=|-.....-..|..++. --.+.-+..+++-.+.. -+...+.| +..+|-++-.....+++++..-+....+
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~-----~l~~~~~k--i~~Lek~leL~~k~~~rql~~e~kK~~~ 168 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQ-----KLQEKEKK--IQELEKQLELENKSFRRQLASEKKKHKE 168 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 666655554444544432 11112222222222222 22333333 3445666666677788887777777777
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhc
Q 005076 524 LSSTKSNIQQNIASFKQRIFFIDK 547 (715)
Q Consensus 524 lSS~ks~IQQ~IasfKQki~Fidk 547 (715)
+-..-..++.+|..+.|+|-=.|+
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777778888899999988865554
No 100
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=1.2e+02 Score=29.59 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 005076 501 EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFK 539 (715)
Q Consensus 501 Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfK 539 (715)
++|...+|+++++++.-++.+..|-..++.+|+-|.+++
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998877764
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.76 E-value=4.1e+02 Score=32.08 Aligned_cols=133 Identities=25% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh-----------------------hhhhhhccCcc-hhhhhhH
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQ-----------------------RIFFIDKRVPD-LEAEKKV 558 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQ-----------------------ki~Fidkr~pe-LEAEKkv 558 (715)
|...+|-.|.+..-++.-|++.-.+-..+=+.+.+.+. ...=+|..+|+ ||..-+|
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~v 363 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKV 363 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHH
Q ss_pred HHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhchhhHHHHHHHHH
Q 005076 559 AAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG-------LISSKEKEVAMARFQR 631 (715)
Q Consensus 559 AaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg-------LI~~KEkE~Ama~~qr 631 (715)
|-. |++++.+|.|.|..+...++. ++.-+...++.++...-+++.-+|+ .|..=|+++ +-
T Consensus 364 av~-----Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~EL-----r~ 430 (717)
T PF09730_consen 364 AVS-----EVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKEL-----RA 430 (717)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----HH
Q ss_pred HHHhhhhhhhHHhhhhh
Q 005076 632 LRIVAGAATAERSAALE 648 (715)
Q Consensus 632 LrL~a~aArAEr~aA~E 648 (715)
++..|+-+.+.+++|.+
T Consensus 431 l~~~A~E~q~~LnsAQD 447 (717)
T PF09730_consen 431 LSKLAGESQGSLNSAQD 447 (717)
T ss_pred HHHHHHhHHHHHHHHHH
No 102
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.37 E-value=3.4e+02 Score=28.15 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhh
Q 005076 478 LRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKK 557 (715)
Q Consensus 478 lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKk 557 (715)
+.++.+++.+-..||.. .||+|-+-+++..|+++-..-..+=-.-..|..++--.-.+.-.++.=-+
T Consensus 10 ~~~a~~~~~~dk~EDp~-------------~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 10 LVKANINELLDKAEDPE-------------KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHHhhcCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543 56777777777777776554444433333333444444444445554445
Q ss_pred HHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 558 VAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 558 vAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
.|=.+.|=.=|...+.+.++|..-...++..+..+..-+.+++..|..+-.+|.+++-
T Consensus 77 ~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 77 LALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677666777777778888888888888888888888888888888888877764
No 103
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.01 E-value=5.1e+02 Score=29.66 Aligned_cols=133 Identities=17% Similarity=0.342 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhc---hhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHH
Q 005076 396 RAVEERISIVVSDFQEYQSSINAK---YDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEY 472 (715)
Q Consensus 396 ~aV~erIs~VVS~F~e~QssId~k---~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~ 472 (715)
+..+++|..+-..|...+-.|+.+ |+.+++.+..+...-+.+.-.-+++. ..+.+++.+|-.+=
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~-------------~~l~~L~~dE~~Ar 413 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN-------------ESLQSLRKDEKEAR 413 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 444445555555554444444332 55555555555444444433333332 34556666776666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 473 WEVVELRRSLMSSILKSREDKVKLAKT-------EEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 473 qe~V~lRr~l~ssIlKSrEdk~~L~k~-------EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
+.+..++..|-. .|.+=.|..|-.. =...+..|+.+.++.+.-+--+.+++..-..++.+|..+..+.-
T Consensus 414 ~~l~~~~~~l~~--ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~ 489 (560)
T PF06160_consen 414 EKLQKLKQKLRE--IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTE 489 (560)
T ss_pred HHHHHHHHHHHH--HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555432 3333344444222 23345667777777777777777888888888888888877654
No 104
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.86 E-value=7.5e+02 Score=31.55 Aligned_cols=104 Identities=30% Similarity=0.460 Sum_probs=83.6
Q ss_pred hhhhHHHHHhhhhh--hHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhh---chhhHHHHHHh
Q 005076 355 DDLREKEILYKKKD--ILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINA---KYDSLQSIISQ 429 (715)
Q Consensus 355 dDkrEKeiL~Kkkd--vL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~---k~~~Lqs~lsq 429 (715)
.|++|+++--+|++ ..+.|+.++=..++.||..+++ -.+.=.|.+.++..-.+|.+.+-+|.. .|+.+++.+.+
T Consensus 250 ~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~ 328 (1141)
T KOG0018|consen 250 MDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIER 328 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHH
Confidence 46677777666644 5889999999999999999999 545556777777777888888888764 68888999999
Q ss_pred hhhhhHHhhhhhHHHhHhhhhhhh-cccchH
Q 005076 430 LNLESEAMSMKKKEIDKFLNDEVD-RGTKLK 459 (715)
Q Consensus 430 ~~letEaL~~KkkeID~fl~~ee~-~gakLR 459 (715)
+..+-.++.-++.+..+=|-...+ +|.+|.
T Consensus 329 ~ek~l~av~~~~~~fekei~~~~q~rg~~ln 359 (1141)
T KOG0018|consen 329 LEKELKAVEGAKEEFEKEIEERSQERGSELN 359 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999998888877777 775553
No 105
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.71 E-value=2.8e+02 Score=26.50 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=9.6
Q ss_pred hhhhhHHHhHhhhhhhhcccchHH
Q 005076 437 MSMKKKEIDKFLNDEVDRGTKLKE 460 (715)
Q Consensus 437 L~~KkkeID~fl~~ee~~gakLRe 460 (715)
+...+..++.|-..-+..-..+++
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333
No 106
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=45.29 E-value=7 Score=46.24 Aligned_cols=329 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q 005076 300 DTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLA 379 (715)
Q Consensus 300 ~~~~k~A~~lsskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~ 379 (715)
...+.+.+.--.+.+..|....+.+-.-.=-..-|.+-+..=-..| .+..++-.-.-+.+-+..-.|..||.+|-.
T Consensus 372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L----k~~lee~~e~~e~lere~k~L~~El~dl~~ 447 (859)
T PF01576_consen 372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL----KNELEELQEQLEELERENKQLQDELEDLTS 447 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3344445555567778887766544322212222222211111122 222233333345566666777777777765
Q ss_pred HHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhh---hhchhhHHHHHHhhhhhhH-HhhhhhHHHhHhhhhhhhcc
Q 005076 380 LVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSI---NAKYDSLQSIISQLNLESE-AMSMKKKEIDKFLNDEVDRG 455 (715)
Q Consensus 380 lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssI---d~k~~~Lqs~lsq~~letE-aL~~KkkeID~fl~~ee~~g 455 (715)
-.......+.+....++..+-.+...-....+.-..+ ..++-+|+..++++..+-+ .|.-|-.|+++. -....
T Consensus 448 q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~---Rr~~q 524 (859)
T PF01576_consen 448 QLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEET---RRNHQ 524 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHhhH
Confidence 5554444455555444444444444333333333333 2355566666666665543 233333344331 12223
Q ss_pred cchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 005076 456 TKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNI 535 (715)
Q Consensus 456 akLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~I 535 (715)
..|+.+=.--..|.+.-...+..+++|-+-|-.....=-...+.-.++...+..++.++.+....|.+-...+..++..+
T Consensus 525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~ 604 (859)
T PF01576_consen 525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQL 604 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444444445688888889999999977764432111122233446666777788888887777777776666666665
Q ss_pred HHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 536 ASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 536 asfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
.....|+.....-+-++....-.+--+|.--|+ |.--+..+..+++..-........++|.+|..--..|-+.
T Consensus 605 ~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~-----el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~-- 677 (859)
T PF01576_consen 605 AVSERRLRALQAELEELREALEQAERARKQAES-----ELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEE-- 677 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 555555444443333333332222222221111 0011111111111111111222233333333333322222
Q ss_pred hhhchhhHHHHHHHHHHHHhhhhhhhHHhh
Q 005076 616 LISSKEKEVAMARFQRLRIVAGAATAERSA 645 (715)
Q Consensus 616 LI~~KEkE~Ama~~qrLrL~a~aArAEr~a 645 (715)
..+-+.|+-+|+|....++.-..|+..
T Consensus 678 ---~~~~~~~~ek~kka~~~~~~l~~eL~~ 704 (859)
T PF01576_consen 678 ---QSEAEAAEEKAKKAQAQAAQLAEELRQ 704 (859)
T ss_dssp ------------------------------
T ss_pred ---HHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 234567788888888877766655543
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.28 E-value=2.9e+02 Score=26.55 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhh
Q 005076 506 EVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGL 585 (715)
Q Consensus 506 dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~ 585 (715)
+.-..+..+..+.+-+.++=.+...+-++|.+|-.|+.-++..+-.++. ++..+-.++.+..-. ...-+.+
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~--~l~~~k~~lee~~~~-------~~~~E~l 78 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE--QLKEAKEKLEESEKR-------KSNAEQL 78 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHH-------HHhHHHH
Confidence 3444556677777788888888888899999999999887776655543 444444444444332 2333478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHH
Q 005076 586 QQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEV 624 (715)
Q Consensus 586 ~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~ 624 (715)
+.+++...-+|+..++....|+.+|.++++-.---|+-+
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKV 117 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888888899999999999999988876554444433
No 108
>PRK12705 hypothetical protein; Provisional
Probab=45.25 E-value=1.4e+02 Score=34.26 Aligned_cols=87 Identities=20% Similarity=0.341 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhc
Q 005076 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDR 454 (715)
Q Consensus 375 e~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~ 454 (715)
++.+.+=...|.|+.+-...++.-+.||..-- ..+|.|.+.|.....++......|.-+++++++. .++.
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e-------~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~ 128 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKE-------EQLDARAEKLDNLENQLEEREKALSARELELEEL---EKQL 128 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34444444455555555555555555543321 1367888888888888888888888888888888 5666
Q ss_pred ccchHHHHHhcHHHHHH
Q 005076 455 GTKLKELARVSADEAKE 471 (715)
Q Consensus 455 gakLRe~~~~s~~EAk~ 471 (715)
..+|-++++.+.+|||.
T Consensus 129 ~~~Le~ia~lt~~eak~ 145 (508)
T PRK12705 129 DNELYRVAGLTPEQARK 145 (508)
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 77999999999999985
No 109
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.10 E-value=8.1e+02 Score=31.73 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=90.7
Q ss_pred HHHhhhhhhh--hhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhh
Q 005076 340 EARAVLNNSI--EHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSIN 417 (715)
Q Consensus 340 eAr~~Ln~sI--EhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId 417 (715)
.-.+.|..++ -|++.+-..||..+..+.+.+++|++.+-..|-..+.+|....+...++.+.-.+.-..-...| -++
T Consensus 806 ~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~-qle 884 (1294)
T KOG0962|consen 806 ELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQ-QLE 884 (1294)
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhH
Confidence 3344444433 3567778899999999999999999999999999999988877776666554444333322222 123
Q ss_pred hchhhHHHHHHhh----hhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005076 418 AKYDSLQSIISQL----NLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDK 493 (715)
Q Consensus 418 ~k~~~Lqs~lsq~----~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk 493 (715)
.++.+|++..+.+ +--.+.+.-++.+.+.+++.-++.-.+ |.. +...|..|..-+--|.++..-+-+--...
T Consensus 885 ~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~-~~~---~~~~aqk~~~~ine~~s~l~~~~~~~~~~ 960 (1294)
T KOG0962|consen 885 EDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE-RNT---SEKLAQKKRNDINEKVSLLHQIYKLNECF 960 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH-hhH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444443333 233455666777777777765554332 111 44455555554555555555444444444
Q ss_pred hhhhhh
Q 005076 494 VKLAKT 499 (715)
Q Consensus 494 ~~L~k~ 499 (715)
....+.
T Consensus 961 ~~~~~~ 966 (1294)
T KOG0962|consen 961 EQYGFD 966 (1294)
T ss_pred HHHhhh
Confidence 433333
No 110
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.58 E-value=6e+02 Score=30.04 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005076 585 LQQEMEKAVLELEKLEENIEDTINRLQEIEGLIS 618 (715)
Q Consensus 585 ~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~ 618 (715)
++.-|+|-.+..-.+=++..+-..+....|.+++
T Consensus 412 Lq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ 445 (617)
T PF15070_consen 412 LQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFI 445 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444455555566677777777665
No 111
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=43.80 E-value=3.9e+02 Score=27.66 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-++|.+.|..+++-+...-..+.+++.. .-.++.|+..++++..+.|......++.+|..=...
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~--------------l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~ 101 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQK--------------QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVAT 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776666555444444332 235788999999999999999999999999999999
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 313 Eme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
.+++|...-+. |.++.--++-.++.+-|-..-...|...+
T Consensus 102 ~~~~a~~~ie~-Ek~~a~~~L~~~v~~la~~~A~kiL~~~~ 141 (250)
T PRK14474 102 ARDEWLEQLER-EKQEFFKALQQQTGQQMVKIIRAALADLA 141 (250)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999876543 44555555555555555444444444444
No 112
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.03 E-value=1.4e+02 Score=31.87 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcc
Q 005076 472 YWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPD 551 (715)
Q Consensus 472 ~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~pe 551 (715)
||.. |+.+|.|+..-=+.=-.-.+-+|.+.+++-.-+-+.+.--.-++|--.+.+.|-|+|.++++++--..++.--
T Consensus 35 ~q~~---r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~ 111 (246)
T KOG4657|consen 35 IQSP---RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQL 111 (246)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhh
Q 005076 552 LEAEK 556 (715)
Q Consensus 552 LEAEK 556 (715)
|+-|+
T Consensus 112 lkeE~ 116 (246)
T KOG4657|consen 112 LKEEK 116 (246)
T ss_pred HHHHh
No 113
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=42.39 E-value=3.2e+02 Score=26.26 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|+++|..+++-+...-..+.+++... -.+..|+..+++..-++|....+.+..+|..-....
T Consensus 51 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L--------------~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~ 116 (174)
T PRK07352 51 RREAILQALKEAEERLRQAAQALAEAQQKL--------------AQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARL 116 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777766655555554444322 345677778888888888888888888888888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsV 353 (715)
+++|...-+ .+.++.--++..++++-|-..-...|.+.+
T Consensus 117 ~~~a~~~i~-~e~~~a~~~l~~qi~~la~~~A~kil~~~l 155 (174)
T PRK07352 117 KQTAAADLS-AEQERVIAQLRREAAELAIAKAESQLPGRL 155 (174)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 888887644 455566666666666666555555555555
No 114
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.11 E-value=3.3e+02 Score=26.34 Aligned_cols=106 Identities=8% Similarity=0.146 Sum_probs=69.5
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|.+.|..+++-++.....+.+++. .--.+..|+..++++--+.|....+.+..+|..-..+-
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~--------------~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~ 115 (173)
T PRK13453 50 RERDINRDIDDAEQAKLNAQKLEEENKQ--------------KLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGM 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555544443 33456777778888888888888888888888888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVE 354 (715)
+++|...-+. +..+.--++..+.++-|-.-....|.+.+-
T Consensus 116 ~~~A~~~I~~-ek~~a~~~l~~ei~~lA~~~a~kll~~~l~ 155 (173)
T PRK13453 116 IETAQSEINS-QKERAIADINNQVSELSVLIASKVLRKEIS 155 (173)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence 8887766543 445555566666666666666666666553
No 115
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.09 E-value=1.7e+02 Score=30.30 Aligned_cols=91 Identities=27% Similarity=0.387 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhcc
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTK--SNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSV 580 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~k--s~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~ 580 (715)
|.+.+|.|+|..|.--+-+.+|||-- -.||..|.++|--..=..+|+ -|||++-+.-. -.
T Consensus 91 l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl-------------~~~k~g~~~vt-----pe 152 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL-------------KNIKAGTNHVT-----PE 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhcccCC-----HH
Confidence 55678999999999999999999955 479999999876544333332 36776655322 24
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005076 581 EKDGLQQEMEKAVLELEKLEENIEDTINRLQ 611 (715)
Q Consensus 581 EKe~~~~~leka~~eLe~~E~~I~~t~~~lq 611 (715)
+|+.+.-+-+++-.+-.+...-..+.++++.
T Consensus 153 dk~~v~~~y~~~~~~wrk~krmf~ei~d~~~ 183 (201)
T KOG4603|consen 153 DKEQVYREYQKYCKEWRKRKRMFREIIDKLL 183 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888876666666663
No 116
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=41.90 E-value=2e+02 Score=28.24 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYD 272 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~ 272 (715)
+|.++|.++|..+++.|+.+-..+.+.+...--...+=+.
T Consensus 35 eR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 35 AKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999888888777665444444333
No 117
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=41.16 E-value=83 Score=29.03 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhh
Q 005076 626 MARFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEE 674 (715)
Q Consensus 626 ma~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~ 674 (715)
+.+|+ +.+-||.||.-...|+ ..||.++|+-++++|+..-.+|-+.++
T Consensus 8 ~~~~~-II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt 58 (104)
T PRK09591 8 VAAFE-IILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQT 58 (104)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 7778999998776665 579999999999999999999999888
No 118
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.51 E-value=6.2e+02 Score=29.04 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=31.8
Q ss_pred hhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhh----hhcccchHHHHHhcHHHHHH
Q 005076 416 INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDE----VDRGTKLKELARVSADEAKE 471 (715)
Q Consensus 416 Id~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~e----e~~gakLRe~~~~s~~EAk~ 471 (715)
++.+...|.....++...-..|.-+++++|+....- .+.-.+|-.+++.+.+|||.
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~ 151 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKE 151 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 344444444444444444444445555554443322 23445789999999999985
No 119
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.88 E-value=90 Score=28.34 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=39.3
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 492 DKVKLAKTE-EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 492 dk~~L~k~E-Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
|-|.|++|| ++|-+.-..|.+++-.++.+=-+|-..-..++|+-.++..||.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889998 5677777888888888877776777777777777777776663
No 120
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=39.56 E-value=81 Score=29.76 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccc
Q 005076 624 VAMARFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLK 678 (715)
Q Consensus 624 ~Ama~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~ 678 (715)
.-+.+|+ +..-+|.||.--.-|+ ..||.++|+.++++|...=.+|-+.++-=++
T Consensus 17 ~e~~~~~-II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~qt~Liq 73 (115)
T PRK10454 17 LEEVVMG-LIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIE 73 (115)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356676 7888999998776665 5799999999999999999999999883333
No 121
>PRK10698 phage shock protein PspA; Provisional
Probab=39.11 E-value=4.4e+02 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARASLQELSSTK 528 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~k 528 (715)
....+-++|...++.|+..+..+|+--..|..|.
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666655543
No 122
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.64 E-value=5e+02 Score=27.43 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhh---
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESL--- 309 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~l--- 309 (715)
|.++.++..|+-.+|=.+|+..-..+-..+| .++-.+...=...|.+-+.=|..|+.--...+-..-.-.+.+
T Consensus 58 ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~----~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 58 DYLDTFALKLGTIDRIAQRIIKEEIEYLVEL----REYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5788899999999998888876554444433 456667777777888888888888754444433332222222
Q ss_pred ---cHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 005076 310 ---SSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEK 386 (715)
Q Consensus 310 ---sskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~ 386 (715)
+.+||..+--|+ -.++|++|...-+++.|++-+-.+-.
T Consensus 134 yl~~Lke~~~Y~~sl---------------------------------------k~vlK~RdqkQ~d~E~l~E~l~~rre 174 (240)
T cd07667 134 FLPVLREYILYSESM---------------------------------------KNVLKKRDQVQAEYEAKLEAVALRKE 174 (240)
T ss_pred HHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222221 13667777777777776665432333
Q ss_pred hhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHH-HHHhc
Q 005076 387 EIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKE-LARVS 465 (715)
Q Consensus 387 EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe-~~~~s 465 (715)
.|...+.+|++++.++ .-.+. .-++|++.| +..|-..+|. |...+
T Consensus 175 ~~~kLe~~ie~~~~~v-------------------------e~f~~------~~~~E~~~F---e~~K~~e~k~~l~~~A 220 (240)
T cd07667 175 ERPKVPTDVEKCQDRV-------------------------ECFNA------DLKADMERW---QNNKRQDFRQLLMGMA 220 (240)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3333333333333333 11111 235677777 3444455554 34456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005076 466 ADEAKEYWEVVELRRSLM 483 (715)
Q Consensus 466 ~~EAk~~qe~V~lRr~l~ 483 (715)
.--..-|+.++..|.++.
T Consensus 221 d~~i~fy~~~~~~We~~l 238 (240)
T cd07667 221 DKNIQYYEKCLTAWESII 238 (240)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 667888999999999863
No 123
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.47 E-value=9.6e+02 Score=30.69 Aligned_cols=229 Identities=22% Similarity=0.313 Sum_probs=120.6
Q ss_pred hhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhh
Q 005076 355 DDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLES 434 (715)
Q Consensus 355 dDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~let 434 (715)
=|.++-+.|-.+|+-|+.||.+|-. |-+ |..+--+.|+-++-||...-.... ++.
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~--~~~--e~~~v~~~i~~le~~~~~~~~~~~------------------~~k--- 703 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK--RRK--EVSSVESKIHGLEMRLKYSKLDLE------------------QLK--- 703 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH--hhh--hHHHHHHHHHHHHHHHHHHHHHHH------------------HHH---
Confidence 5778889999999999999998866 333 444444445444444443322222 222
Q ss_pred HHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 005076 435 EAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEA 514 (715)
Q Consensus 435 EaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQev 514 (715)
-.|...++|+-...+.-...|-++-+|.+--..--....+..+.-+++...|.+.==-++|.. +=+ -.+.++ +
T Consensus 704 ~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~--Yee~~~-~--- 776 (1141)
T KOG0018|consen 704 RSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IRE--YEEREL-Q--- 776 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eeh--HHHHHH-H---
Confidence 112223334433333333444444455444444444455555666777888888766677665 211 112222 2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh-----ccCcchhh------------hhhHHHHHHchHHHHHHHHHhhh
Q 005076 515 SAARASLQELSSTKSNIQQNIASFKQRIFFID-----KRVPDLEA------------EKKVAAAARNFKEAARLAAEAKS 577 (715)
Q Consensus 515 S~AR~SLQElSS~ks~IQQ~IasfKQki~Fid-----kr~peLEA------------EKkvAaaaRnFKEAaRiAAEAKa 577 (715)
|+.+-++...++.|+.+.-+|.|-- .|+-.++- ++.+.|+.--..+. ..
T Consensus 777 -------~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-------~~ 842 (1141)
T KOG0018|consen 777 -------QEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-------EE 842 (1141)
T ss_pred -------HHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-------HH
Confidence 2333344445566666666666632 22221111 12233333222222 22
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHH
Q 005076 578 LSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRL 632 (715)
Q Consensus 578 L~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrL 632 (715)
+.. |+ ..+.++...++....+.....+..++...+=|.+.|-..=.-.++|-
T Consensus 843 ~e~-k~--k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 843 LEK-KN--KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 221 22 56667777777777777777777777777777777655555555553
No 124
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=38.41 E-value=79 Score=28.80 Aligned_cols=52 Identities=37% Similarity=0.452 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccccc
Q 005076 628 RFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLKEE 680 (715)
Q Consensus 628 ~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~~e 680 (715)
+|+ +..-+|.||.-..-|+ ..||.++|+.+++||+..=.+|-+.++-=++.|
T Consensus 5 ~~~-iI~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~AH~~qt~liq~e 59 (97)
T cd00215 5 SFQ-IILHAGNARSKALEALKAAKEGDFAEAEELLEEANDSLNEAHHAQTKLLQQE 59 (97)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 6777899998766665 579999999999999999999999998444433
No 125
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=37.32 E-value=96 Score=28.34 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccc
Q 005076 626 MARFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLK 678 (715)
Q Consensus 626 ma~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~ 678 (715)
+.+|+ +..-+|.||.-...|+ ..||.++|+-+++||+..-.+|-+.++-=++
T Consensus 5 ~~~~~-iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~AH~~qt~liq 59 (99)
T TIGR00823 5 LVGFE-LIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCLNEAHLAQTSLLA 59 (99)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 7778999998776665 5799999999999999999999999983333
No 126
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=37.23 E-value=3.9e+02 Score=25.75 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=72.8
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|+++|..+++.+...-..+.+++ ..--.+..|+...++.--++|....+.+..+|..-..+.
T Consensus 48 R~~~I~~~l~~Ae~~~~eA~~~~~e~e--------------~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~ 113 (173)
T PRK13460 48 RASGVQNDINKASELRLEAEALLKDYE--------------ARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ 113 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655555444443 333456788888888888888888888888888888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVE 354 (715)
+++|...-+. +..+.--++..++++-|-......|.+.+.
T Consensus 114 ~~~a~~~ie~-e~~~a~~el~~ei~~lA~~~a~kil~~~l~ 153 (173)
T PRK13460 114 KDQAVKEIEL-AKGKALSQLQNQIVEMTITIASKVLEKQLK 153 (173)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8888876653 445555666666666666666666666553
No 127
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.04 E-value=5.1e+02 Score=26.75 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred cHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 005076 310 SSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIA 389 (715)
Q Consensus 310 sskEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIA 389 (715)
+..+...|....+.+..+-.+|. ..-.+++++|-+.+++..+.+...-..-.-+..|-..+++=+.--|.-..
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~-------~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMR-------KIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 33678899999998888777763 23346788999999987777665544444444555554444444444333
Q ss_pred hhcchHHHHHHHHHHHhhhhhhh
Q 005076 390 ENDSNIRAVEERISIVVSDFQEY 412 (715)
Q Consensus 390 eNd~~I~aV~erIs~VVS~F~e~ 412 (715)
.++.=-+|.-.|++||+..
T Consensus 94 ----dl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 94 ----DLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred ----HHHHHHHHHHHHHHHHHHh
Confidence 2333344555556666553
No 128
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.82 E-value=1.3e+02 Score=30.39 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHH
Q 005076 362 ILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSI 426 (715)
Q Consensus 362 iL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~ 426 (715)
.|..+-..|..|++.|-..++..+..++.....|..++.+|..+...=.+.-..+...++.|+.-
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555666666666666666666655555556666666666553
No 129
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.69 E-value=3.4e+02 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=26.0
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Q 005076 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEI 388 (715)
Q Consensus 348 sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EI 388 (715)
..++.|++.++|++-|...+.-.++||...=.=.-.-|..|
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887777777777655433333333333
No 130
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.61 E-value=2.1e+02 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 005076 504 SAEVQTLQQEASAARASLQELSSTKSNIQQNI 535 (715)
Q Consensus 504 ~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~I 535 (715)
.+..|.+++++..-..+++.+......++.-+
T Consensus 12 ~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 12 AAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 131
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.60 E-value=1.8e+02 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQ 540 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQ 540 (715)
...+|-.|-++...+...++++-+++..|...|...|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 45566667777777777777787788878777777664
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.53 E-value=6e+02 Score=26.89 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=70.6
Q ss_pred HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhh------hhhHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 005076 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVED------DLREKEILYKKKDILTNELQKLLALVRDKE 385 (715)
Q Consensus 312 kEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEd------DkrEKeiL~KkkdvL~~ELe~LL~lVr~KE 385 (715)
+.++....-.|.|+.....++.|.+-+++=......-+ ..|.+ -.+|.+++..+...|..||.+|...+.-++
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555567777777777777666655544444444 33332 235677777888888888888888777777
Q ss_pred hhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHH
Q 005076 386 KEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKE 443 (715)
Q Consensus 386 ~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~Kkke 443 (715)
.+|- .+.++|......|.+...+++..+ ..++.+-..++.++.+
T Consensus 124 ~~i~-------~l~~~~~~~e~~~~e~~~~~e~e~-------~~i~e~~~~~~~~~~~ 167 (239)
T COG1579 124 KEIE-------DLKERLERLEKNLAEAEARLEEEV-------AEIREEGQELSSKREE 167 (239)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6654 455555566666666666655443 3444444444444443
No 133
>PF13514 AAA_27: AAA domain
Probab=32.57 E-value=1e+03 Score=29.31 Aligned_cols=168 Identities=19% Similarity=0.287 Sum_probs=101.2
Q ss_pred hhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH-------
Q 005076 440 KKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQ------- 512 (715)
Q Consensus 440 KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQ------- 512 (715)
-+..+...|..... +..|..+++........+++....++.+..-+-+.+.+.-.+..--..+...+...++
T Consensus 637 ~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 715 (1111)
T PF13514_consen 637 ARAALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALA 715 (1111)
T ss_pred HHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 5566666666655555566655555555544443333322222211222222222222
Q ss_pred ---------------------HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccC----cchhhhhhHHHHHHchHH
Q 005076 513 ---------------------EASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRV----PDLEAEKKVAAAARNFKE 567 (715)
Q Consensus 513 ---------------------evS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~----peLEAEKkvAaaaRnFKE 567 (715)
++-.....++.+..+...|++++..|.+++..+-..+ |....+..+..-...+++
T Consensus 716 ~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~ 795 (1111)
T PF13514_consen 716 ELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEE 795 (1111)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHH
Confidence 2333444555566677789999999999988776553 334445667777777778
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005076 568 AARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTIN 608 (715)
Q Consensus 568 AaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~ 608 (715)
+-......+.+..+.+.++..++.+...+..++.+|..-..
T Consensus 796 a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 796 AREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87778888888888888888888888888888888866543
No 134
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.27 E-value=5.9e+02 Score=26.41 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHH
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAA 562 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaa 562 (715)
+.+..+|.|.+++..-++++++.+.....+.-.|..+.+||.=.....-.|.|.+.++-|.
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~ 149 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888888888765444444444444444433
No 135
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=31.38 E-value=54 Score=37.78 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHH
Q 005076 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQ 250 (715)
Q Consensus 217 ~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~ 250 (715)
..|+.+.++|++..+||+|.++-|.|.++++-..
T Consensus 205 ~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~ 238 (598)
T PRK00558 205 KELEEKMEEASENLEFERAARYRDQIQALRRVQE 238 (598)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999987544
No 136
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.32 E-value=7.3e+02 Score=28.36 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHH----
Q 005076 512 QEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQ---- 587 (715)
Q Consensus 512 QevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~---- 587 (715)
.++.-|+..+.+---+-...|+.+..|.++--.|| |+-+++-...-.+. +=.+--.+..+...+..
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlD---P~~~a~~~~~lI~~-------Le~qLa~~~aeL~~L~~~~~p 311 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDID---PKETITAIYQLIAG-------FETQLAEAKAEYAQLMVNGLD 311 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCC
Confidence 34444555554444555556666677777766666 44444333222221 11111112222222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhh
Q 005076 588 ---EMEKAVLELEKLEENIEDTINRLQEIE---GLISSKEKEVAMARFQRLRIVAGAATAERSAAL 647 (715)
Q Consensus 588 ---~leka~~eLe~~E~~I~~t~~~lqe~E---gLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~ 647 (715)
.+.........||++|...-.+|-.-- || -..++.|++|.+...-|..-..+|+
T Consensus 312 ~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~l------a~~laeYe~L~le~efAe~~y~sAl 371 (434)
T PRK15178 312 QNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGS------SESLSLFEDLRLQSEIAKARWESAL 371 (434)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCch------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444566777777777777764322 23 3368899999999998888777664
No 137
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.26 E-value=5.7e+02 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhhhcHHHHHHHHhhHhhhhhh
Q 005076 297 NSADTFLKKAESLSSEEMEKWLASTEALEGR 327 (715)
Q Consensus 297 ~~A~~~~k~A~~lsskEme~W~ss~E~LE~K 327 (715)
+-++.|.+---..+....+.|..+...||.-
T Consensus 54 ~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~ 84 (190)
T PF05266_consen 54 NLAEKVKKLQIDDSRSSFESLMKTLSELEEH 84 (190)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHc
Confidence 3455565555566778888898888888753
No 138
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=31.23 E-value=5e+02 Score=25.26 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=11.8
Q ss_pred hhhhHHHHHhHHHHHHhhhhhhhh
Q 005076 327 RKIELEIESHLVNEARAVLNNSIE 350 (715)
Q Consensus 327 KK~EleiEs~~v~eAr~~Ln~sIE 350 (715)
.|-+++-..+....+=+.|..-|.
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444443
No 139
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=7.1e+02 Score=26.87 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhcc
Q 005076 469 AKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKR 548 (715)
Q Consensus 469 Ak~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr 548 (715)
+-+.-.+|.-=++++... .+||..|-.++..+-...+.|.--.-..-..++.|-+.++..--=|...+++..-.-.-
T Consensus 136 vtAi~~iv~aDk~ile~q---k~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 136 VTAISVIVDADKKILEQQ---KEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444555555544432 46777777777666655555544444555666666666666666677777776655554
Q ss_pred CcchhhhhhHH
Q 005076 549 VPDLEAEKKVA 559 (715)
Q Consensus 549 ~peLEAEKkvA 559 (715)
.-.|+.+|..+
T Consensus 213 ~a~l~~qka~a 223 (265)
T COG3883 213 KAALEEQKALA 223 (265)
T ss_pred HHHHHHHHHHH
Confidence 55555444333
No 140
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=30.38 E-value=96 Score=25.58 Aligned_cols=42 Identities=31% Similarity=0.504 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhh
Q 005076 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSI 416 (715)
Q Consensus 375 e~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssI 416 (715)
++|..++...|.+++.-|.+|++.+.=|..+..+--|..-+|
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~P~I 44 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQTPSI 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 568888899999999999999999999999887765554443
No 141
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=30.21 E-value=6.4e+02 Score=26.14 Aligned_cols=33 Identities=33% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhh
Q 005076 603 IEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAAT 640 (715)
Q Consensus 603 I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aAr 640 (715)
|..+.+.-++||+| +..++.-|+|||-..-+..
T Consensus 115 ~~~~a~~~~e~e~~-----~~q~~~~~~rl~~~~~~ql 147 (212)
T COG3599 115 YLEDAKIAQELEDL-----KRQAQVERQRLRSDIEAQL 147 (212)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 33333677889988 5678888999987655443
No 142
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.66 E-value=4.1e+02 Score=29.68 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 005076 584 GLQQEMEKAVLELEKLEENI 603 (715)
Q Consensus 584 ~~~~~leka~~eLe~~E~~I 603 (715)
.+..+++....+|++++.++
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 143
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.63 E-value=1.4e+02 Score=26.25 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=48.6
Q ss_pred HHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHH
Q 005076 520 SLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKL 599 (715)
Q Consensus 520 SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~ 599 (715)
||.|...+-+.++-+-=.+|=||.|.+.|+...- ..+-++ +-.+--.|.+|.+.++.+++....-|..+
T Consensus 1 tlrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~---------~~~~~~--~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 1 TLREQEEQIDKLKKENFNLKLRIYFLEERLQKLG---------PESIEE--LLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc---------cccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888889999999999999998876221 111111 22233346666667777776666666666
Q ss_pred HHHHH
Q 005076 600 EENIE 604 (715)
Q Consensus 600 E~~I~ 604 (715)
++.|+
T Consensus 70 ~~~~e 74 (75)
T PF07989_consen 70 EKAIE 74 (75)
T ss_pred HHHhh
Confidence 66553
No 144
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=29.51 E-value=35 Score=43.04 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=0.0
Q ss_pred CCCCCCCcccccccchhhhhhhhcceecccCCCCCCCCCCCCCC
Q 005076 79 QPQSSPSITYTKTKSSRKKKRAAGLRIGYGRDTTPHSSSAPDDD 122 (715)
Q Consensus 79 pp~~~~~~~~~q~~ss~rkkkra~~RIGYgR~~~p~~pspp~~~ 122 (715)
||+|+|+|++-.||. |+||+||..+
T Consensus 9 ppppppppg~epps~-------------------pppPppPg~~ 33 (2365)
T COG5178 9 PPPPPPPPGFEPPSQ-------------------PPPPPPPGVN 33 (2365)
T ss_pred CcccccCCCCCCCCC-------------------CCCccCCCcc
No 145
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.44 E-value=4.5e+02 Score=23.78 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccc
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVE 581 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~E 581 (715)
.+....|.+|+++......++.+-+...-..--+.+|.. +..-++=||--|++-=+ +....=
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~-----------------l~~d~~vyk~VG~vlv~-~~~~e~ 68 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER-----------------LPDDTPVYKSVGNLLVK-TDKEEA 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------CCCcchhHHHhchhhhe-ecHHHH
Confidence 345556666666555554444444433333333333321 11233445555655433 222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 582 KDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 582 Ke~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
+..+...++.....+..+++.+...-.++.++++
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555543
No 146
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=28.28 E-value=8.8e+02 Score=27.16 Aligned_cols=205 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHHH
Q 005076 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (715)
Q Consensus 234 ~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lsskE 313 (715)
|-++|.+.|..+++-+..+-.+..+.+.. --.+..|+..++++--++|..-.+.+..+|..=..+-
T Consensus 33 R~~~I~~~L~eAe~a~~ea~~~~~~~e~~--------------L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i 98 (445)
T PRK13428 33 RQDTVRQQLAESATAADRLAEADQAHTKA--------------VEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777776554444333322221 1235568899999999999999999999999888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcc
Q 005076 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDS 393 (715)
Q Consensus 314 me~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~ 393 (715)
+++|...-+. |..+.--++-.++..-|-..-...|...+.+....+.+.-+ ..++|.
T Consensus 99 ~~~a~~~Ie~-ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~----~i~~l~------------------ 155 (445)
T PRK13428 99 KVQGARQVQL-LRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDR----FLDELD------------------ 155 (445)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHhh------------------
Confidence 8888876543 44455555555555555544444444433222222222111 111111
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh-hhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHH
Q 005076 394 NIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL-ESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEY 472 (715)
Q Consensus 394 ~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~l-etEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~ 472 (715)
.|.. ++-+++|--. +.|+- -.|+|.--....|..+... -+..+..++.--..=+...
T Consensus 156 --------------~~~~--~~~~~~~~~~----~~m~~~sr~~~~~~~~~~~~~~~~~--~~~~~~~~~~el~~v~~~l 213 (445)
T PRK13428 156 --------------AMAP--STADVDYPLL----AKMRSASRRALASLVDRFDSVAADL--DNQALTTLADELVSVAKLL 213 (445)
T ss_pred --------------ccCC--CchhhcCchh----hhhhHhhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHH
Confidence 1222 1112222111 12322 2345666666677766333 1233444444444445667
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005076 473 WEVVELRRSLMSSILKSREDKVKLAK 498 (715)
Q Consensus 473 qe~V~lRr~l~ssIlKSrEdk~~L~k 498 (715)
...+.+||-|.-.-. +-++|.+|+.
T Consensus 214 ~~~~~lrr~l~d~~~-~~~~k~~l~~ 238 (445)
T PRK13428 214 DREPVLTKHLTEPAE-DAAPKIRLVE 238 (445)
T ss_pred cccHHHHHHcCCCCC-ChhhHHHHHH
Confidence 777888988876654 7788888875
No 147
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.86 E-value=3.5e+02 Score=28.97 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhHhhhh
Q 005076 310 SSEEMEKWLASTEALE 325 (715)
Q Consensus 310 sskEme~W~ss~E~LE 325 (715)
..+|.+.|......|+
T Consensus 21 ~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 21 AEKERDTYQEFLKKLE 36 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544444
No 148
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.63 E-value=7.2e+02 Score=26.92 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=37.0
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHH
Q 005076 357 LREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS 403 (715)
Q Consensus 357 krEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs 403 (715)
..||+..-++=.....||+.+++-++.+|+++++...+|.+.-.|.+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655666667789999999999999999998888887777643
No 149
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.54 E-value=9.5e+02 Score=27.29 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcc
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPD 551 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~pe 551 (715)
+..+++.+.++...++..|+++...+..+++++.-++..|-=|++--|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 4444455555555555555555555555555555555555555555554
No 150
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=27.43 E-value=1.6e+02 Score=34.30 Aligned_cols=96 Identities=23% Similarity=0.232 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHH--HH
Q 005076 175 SVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQ--SL 252 (715)
Q Consensus 175 sqIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~--~l 252 (715)
.+|-++++.-.|.| |+--|=+.+..-..|.-|+.-..-.-.+||++--||.+-|||++|.-.-|.+-++.-+-. .=
T Consensus 170 aaiIgaidenKqeA--VakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealRaeilaqld 247 (666)
T KOG4825|consen 170 AAIIGAIDENKQEA--VAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALRAEILAQLD 247 (666)
T ss_pred HHHHHHHHhhHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 46778998877765 667788888888888889988888889999999999999999999888887776655432 22
Q ss_pred HHHHHhhhhhhchhhhhHHH
Q 005076 253 LIALRDAEAHCDAIDSKMYD 272 (715)
Q Consensus 253 l~aLrdAe~~~D~vD~kmq~ 272 (715)
+..|-||+.+.--.|+-++-
T Consensus 248 lhlLeDaelhlrPfdlpadP 267 (666)
T KOG4825|consen 248 LHLLEDAELHLRPFDLPADP 267 (666)
T ss_pred hhhhhhhHhhcCcccCCCCh
Confidence 44677777776666555443
No 151
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=27.33 E-value=89 Score=35.30 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=10.7
Q ss_pred CCCCCCCcccccccc-hhhhhhhhcceec
Q 005076 79 QPQSSPSITYTKTKS-SRKKKRAAGLRIG 106 (715)
Q Consensus 79 pp~~~~~~~~~q~~s-s~rkkkra~~RIG 106 (715)
||.++|+.+.|++.+ .|-|--|-.+||.
T Consensus 213 ~~~~~p~~~~~~~R~E~RVkMnRmR~RIA 241 (457)
T KOG0559|consen 213 QPKPPPSEGATPSRSERRVKMNRMRLRIA 241 (457)
T ss_pred CCCCCcccccCCCcchhhhhhHHHHHHHH
Confidence 334444422234333 3333333334553
No 152
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.31 E-value=1.3e+03 Score=28.92 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=105.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHH----------HHHhhhhhhhh
Q 005076 344 VLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERI----------SIVVSDFQEYQ 413 (715)
Q Consensus 344 ~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erI----------s~VVS~F~e~Q 413 (715)
+++|.|..++-.+-.|- ++-++-.+++++|..-+-.---.|-+.|.+|......- ..-|..|....
T Consensus 626 ele~~i~k~ls~~~eee----~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~h 701 (970)
T KOG0946|consen 626 ELEGLIAKLLSSKTEEE----EQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEH 701 (970)
T ss_pred HHHHHHHHHhcCCCccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777776544332 22344556788888888777778888888887765432 23344444444
Q ss_pred hhhhhchhhHHHHHH-------hhhhhhHHhhhhhHHHhHhhhhhh-------------hcccchHHHHHhcHH------
Q 005076 414 SSINAKYDSLQSIIS-------QLNLESEAMSMKKKEIDKFLNDEV-------------DRGTKLKELARVSAD------ 467 (715)
Q Consensus 414 ssId~k~~~Lqs~ls-------q~~letEaL~~KkkeID~fl~~ee-------------~~gakLRe~~~~s~~------ 467 (715)
|..--.|+.|.-.+- ++-...|+.-.+-+++-..+...+ .++-..++=-.....
T Consensus 702 sql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~ 781 (970)
T KOG0946|consen 702 SQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQ 781 (970)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc
Confidence 444444444443332 222223333333333322221111 111111111111111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHhhhh-------hhhhHH
Q 005076 468 -----EAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEK---LSAEVQTLQQEASAARASLQELSS-------TKSNIQ 532 (715)
Q Consensus 468 -----EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEe---l~~dvQ~lrQevS~AR~SLQElSS-------~ks~IQ 532 (715)
-+.--++++++-++|. |.+-+|....-+ +-+++|.+-+.+|++--+|-++-+ .+.-|-
T Consensus 782 ~~~~~~~~~qeqv~El~~~l~-------e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ie 854 (970)
T KOG0946|consen 782 GSLNDNLGDQEQVIELLKNLS-------EESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIE 854 (970)
T ss_pred chhhhhhhhHHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHH
Confidence 1222344555544421 222233333332 345677788888888888876544 456678
Q ss_pred HHHHHHhhhhhhhhccCcchhhh
Q 005076 533 QNIASFKQRIFFIDKRVPDLEAE 555 (715)
Q Consensus 533 Q~IasfKQki~Fidkr~peLEAE 555 (715)
|....+++|+-|+++-+-+|--+
T Consensus 855 q~ls~l~~~~k~~~nli~~ltEk 877 (970)
T KOG0946|consen 855 QKLSNLQEKIKFGNNLIKELTEK 877 (970)
T ss_pred HHHHHHHHHhhhhhhHHHHHhhh
Confidence 88888888888888877776443
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.30 E-value=6.7e+02 Score=25.42 Aligned_cols=139 Identities=26% Similarity=0.417 Sum_probs=88.1
Q ss_pred HHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005076 443 EIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQ 522 (715)
Q Consensus 443 eID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQ 522 (715)
.|++| +.-.+.|-.++.--.+|-..+++ .|..+=-+.|...-++-+++.+|. .++.++. -|+
T Consensus 48 AL~k~----e~~e~~Lpqll~~h~eEvr~Lr~------~LR~~q~~~r~~~~klk~~~~el~----k~~~~l~----~L~ 109 (194)
T PF15619_consen 48 ALQKY----EDTEAELPQLLQRHNEEVRVLRE------RLRKSQEQERELERKLKDKDEELL----KTKDELK----HLK 109 (194)
T ss_pred HHHHH----HhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHH
Confidence 45555 55567777777766666655544 444444444555555555554443 2222222 244
Q ss_pred hhhh-----hhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHH
Q 005076 523 ELSS-----TKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELE 597 (715)
Q Consensus 523 ElSS-----~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe 597 (715)
.++. .+..+|+.++...+++---|+++-.|+ +++..+..+|.-- ++.|- .+...+..++.
T Consensus 110 ~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le--k~leL~~k~~~rq--l~~e~-----------kK~~~~~~~~~ 174 (194)
T PF15619_consen 110 KLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE--KQLELENKSFRRQ--LASEK-----------KKHKEAQEEVK 174 (194)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHH--HHHHH-----------HHHHHHHHHHH
Confidence 4443 356778888888888888888888875 6888888888742 33332 45566788888
Q ss_pred HHHHHHHHHHHHHhhhh
Q 005076 598 KLEENIEDTINRLQEIE 614 (715)
Q Consensus 598 ~~E~~I~~t~~~lqe~E 614 (715)
.+..+|.....+|.+-|
T Consensus 175 ~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888887754
No 154
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=25.93 E-value=6.2e+02 Score=24.56 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchh--------------hhhhHHHHH
Q 005076 499 TEEKLSAEVQTLQQEASAA--RASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLE--------------AEKKVAAAA 562 (715)
Q Consensus 499 ~EEel~~dvQ~lrQevS~A--R~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLE--------------AEKkvAaaa 562 (715)
.|.++..+|-.+|.++... .++++++. ..++++...-.+|...=-+.|+|- .|.+++++-
T Consensus 63 ~E~~~l~~v~~~R~~~~~~~~~~~~~~~~----~~~~~l~~al~~l~~~~e~yP~Lka~~~~~~l~~~l~~~E~~I~~aR 138 (186)
T PF04011_consen 63 HEKETLTKVTKARSQANNLSDSADIQEFQ----QAEAELSQALSRLLAVVENYPELKADENFQQLMAQLEETENRIAAAR 138 (186)
T ss_dssp T-HHHHHHHHHHHHHHH---H--SHHHHH----HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccccchHHHH----HHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665522 23333332 345566666666666666788874 455666666
Q ss_pred HchHHHH
Q 005076 563 RNFKEAA 569 (715)
Q Consensus 563 RnFKEAa 569 (715)
|.|-.|+
T Consensus 139 ~~YN~av 145 (186)
T PF04011_consen 139 RAYNDAV 145 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 155
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.41 E-value=6.5e+02 Score=24.67 Aligned_cols=43 Identities=33% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005076 570 RLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQE 612 (715)
Q Consensus 570 RiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe 612 (715)
++-.|.-++++||+.+...+++-......||....++.+.|+.
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455666677777777777776665555555555444444443
No 156
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.40 E-value=3.4e+02 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 586 QQEMEKAVLELEKLEENIEDTINRLQEI 613 (715)
Q Consensus 586 ~~~leka~~eLe~~E~~I~~t~~~lqe~ 613 (715)
..+.+.....+++++++|....+.+..+
T Consensus 92 ~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 92 KKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444444443
No 157
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=25.04 E-value=1.2e+03 Score=27.43 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred ccCCccccccCcccccCCCCCCCCCCCC---CCCCCCCchhhhhhcCCCCccccccccccc------ccccCCCCCCCCc
Q 005076 16 FTPSQLAAEQSLEEDDVPKANPNPNKSE---SPAKSNDIDTCIEAAVSSEPLEENLFSDLT------LQLQTQPQSSPSI 86 (715)
Q Consensus 16 FtPs~~~~ep~~~e~~~p~p~pp~p~~d---~~~~~~~~~~~~s~~~~~~PLDEnLFSDLT------l~~~~pp~~~~~~ 86 (715)
|++...+|.+.. ++.|+|.|++--.. .+.+++....-...+..++|+---|--++- -+.|.+|+|.+.
T Consensus 320 ~as~~s~p~~~~--d~lppPpp~~~~~sp~~pppp~pp~~~p~~~~~a~pp~~~pl~~~~p~~a~~~~~~pphp~p~~~- 396 (518)
T KOG1830|consen 320 TASIPSTPPDPR--DDLPPPPPPLLMNSPIVPPPPSPPSTIPFVEPAAPPPTNPPLCNPFPSIAMTSFLCPPHPLPQGA- 396 (518)
T ss_pred cCCCCCCCCCCc--cCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCCCCccc-
Q ss_pred ccccccchhhhhhhhcceecccCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhcCCCcccCCCCccccccCCCCh
Q 005076 87 TYTKTKSSRKKKRAAGLRIGYGRDTTPHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVVVNEINNNDP 166 (715)
Q Consensus 87 ~~~q~~ss~rkkkra~~RIGYgR~~~p~~pspp~~~~~~~~~~~~p~~~~~~~d~~~~~~n~~v~~~~~~~~~~~~~~~~ 166 (715)
++-++.|+||+||+..+....+--.|+.....-.+-..-.|+...+..++-..---.+--
T Consensus 397 --------------------~~~sppPppppppppg~~~~p~~i~p~~S~a~g~p~~~P~~p~~~~~~~~~~lP~~sDaR 456 (518)
T KOG1830|consen 397 --------------------FFGSPPPPPPPPPPPGPKLPPSVICPSGSLAKGAPMLPPSAPVSEAKRPKPVLPPISDAR 456 (518)
T ss_pred --------------------ccCCCCCCCCCCCCCCCCCCCcccCCCccCCCCCCcCCCCCCchhccCCCCCCCCCCchH
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHhHH--HHHHHHHhhh
Q 005076 167 HQRFEYLRSVIS-DKLNRARELAASVSAARKD--SIRRRRKAAD 207 (715)
Q Consensus 167 ~~rl~~lrsqIs-~KL~~~~q~aasvsa~Rk~--~~~rRRKaae 207 (715)
.-=|+.||+-|. .|.+..|+..|.-.+.--| .|-.||-|.|
T Consensus 457 sdLL~aIr~GiqLrKVeeqreqeakr~~v~ndvatiLsRRiave 500 (518)
T KOG1830|consen 457 SDLLAAIRSGIQLRKVEEQREQEAKREAVENDVATILSRRIAVE 500 (518)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhhccccchHHHHHHHHHHHH
No 158
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=24.66 E-value=6.1e+02 Score=24.05 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=74.4
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-++|.+.|..+++-+...-..+.+++... -.+..|+..++++--.+|..-.+.+...|..=...
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l--------------~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~ 104 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAEL--------------AKARQEAAKIVAQAQERARAQEAEIIAQARREAEK 104 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766665555554332 23567788888888888888888888888888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhh
Q 005076 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVED 355 (715)
Q Consensus 313 Eme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEd 355 (715)
.++.|...-+. +..+..-++.+++++-|-......|.+.+.+
T Consensus 105 ~~~~a~~~I~~-ek~~a~~~L~~~i~~la~~~a~kil~~~l~~ 146 (164)
T PRK14473 105 IKEEARAQAEQ-ERQRMLSELKSQIADLVTLTASRVLGAELQA 146 (164)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCH
Confidence 88888776543 4566666777777776666666666655543
No 159
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=24.64 E-value=1.5e+02 Score=26.76 Aligned_cols=50 Identities=36% Similarity=0.403 Sum_probs=39.3
Q ss_pred HHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccccc
Q 005076 631 RLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLKEE 680 (715)
Q Consensus 631 rLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~~e 680 (715)
.+.+-+|.||.-...|+ ..||.++|+.++++|...=.+|-+.++-=++.+
T Consensus 6 ~iI~~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~AH~~qt~llq~e 58 (96)
T PF02255_consen 6 QIISHAGDARSLAMEALKAAREGDFEEAEELLKEADEELLKAHKIQTELLQQE 58 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677899988766554 679999999999999999999999998444443
No 160
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.56 E-value=2.4e+02 Score=29.54 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhh--hhchhhHHHHHHHHHHHHhh
Q 005076 583 DGLQQEMEKAVLELEK----LEENIEDTINRLQEIEGL--ISSKEKEVAMARFQRLRIVA 636 (715)
Q Consensus 583 e~~~~~leka~~eLe~----~E~~I~~t~~~lqe~EgL--I~~KEkE~Ama~~qrLrL~a 636 (715)
|++..+|--++.||+. .-++|+..=+.+...--| ++.|||.-|..-||+|++..
T Consensus 4 EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 4 EELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556556666665 233333333333333333 46799999999999999765
No 161
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=24.43 E-value=84 Score=35.93 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHH
Q 005076 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAET 247 (715)
Q Consensus 217 ~~LE~eLEeACEaEDFe~AeriSdsLAa~EK 247 (715)
..|+.+.+.|.+..+||+|.++-|.|.+++.
T Consensus 195 ~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 195 EKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999985
No 162
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=24.37 E-value=9.7e+02 Score=26.31 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005076 500 EEKLSAEVQTLQQEASAARASLQELSS 526 (715)
Q Consensus 500 EEel~~dvQ~lrQevS~AR~SLQElSS 526 (715)
...+.+++..++.++..++..+.++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345567777778888888877777644
No 163
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.22 E-value=8.6e+02 Score=25.64 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=93.1
Q ss_pred HHHHHHH--hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhh
Q 005076 480 RSLMSSI--LKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKK 557 (715)
Q Consensus 480 r~l~ssI--lKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKk 557 (715)
+.++++. ++.|-++- +++..-++.|.+.++-.-...|-+..+...+.+....| +|++..=. ..|-+
T Consensus 40 ~~~~s~~~~v~~~~~eF------~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~f-gk~~~lws---~~E~~-- 107 (243)
T cd07666 40 KAVASSVRGVKNRPEEF------TEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEY-GPIYTLWS---ASEEE-- 107 (243)
T ss_pred HHHHHhccccCCCCHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHh---ccchh--
Confidence 4455554 45554443 35566677777777777777777776666666655555 23322200 00111
Q ss_pred HHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh-----hhchhhHHHHHHHHH
Q 005076 558 VAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEK-LEENIEDTINRLQEIEGL-----ISSKEKEVAMARFQR 631 (715)
Q Consensus 558 vAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~-~E~~I~~t~~~lqe~EgL-----I~~KEkE~Ama~~qr 631 (715)
+ ..-..++-..++++...+++ +...-..-..-|.+.-++ .++|+++.++.-|.+
T Consensus 108 L--------------------~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~ 167 (243)
T cd07666 108 L--------------------ADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDS 167 (243)
T ss_pred h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11122223445555555554 222222344455555555 478999999999999
Q ss_pred HHHhhhhhhhHHhhhhhcCChHHHHHHHHHHHHhchHHHhhhh--cccccccccCCCcccchhh
Q 005076 632 LRIVAGAATAERSAALELGDLEEANLLLAEAEAAGQEAKKLEE--ANLKEEEFTNLPEHFISME 693 (715)
Q Consensus 632 LrL~a~aArAEr~aA~E~~D~EEa~lL~aEAeAAe~eA~~Lk~--y~~~~ed~~~~~~~~i~m~ 693 (715)
++-.-+..+++|..+.. ++++.+--..+ |+. + ++. -.|+..-..++..-||.+.
T Consensus 168 k~e~l~k~~~dr~~~~~--ev~~~e~kve~---a~~-~--~k~e~~Rf~~~k~~D~k~~~~~ya 223 (243)
T cd07666 168 KVEALANKKADRDLLKE--EIEKLEDKVEC---ANN-A--LKADWERWKQNMQTDLRSAFTDMA 223 (243)
T ss_pred HHHHHHhhhhhHHHHHH--HHHHHHHHHHH---HHH-H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888864333 33333332333 321 1 333 4555555555555555554
No 164
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=24.13 E-value=8.1e+02 Score=25.33 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhhhc
Q 005076 583 DGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAATAERSAALEL 649 (715)
Q Consensus 583 e~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~E~ 649 (715)
+..+..++.+..+|+..+++....-+ |.. .|.|.-.+-+.+...|+..+-.-..|++....+...
T Consensus 110 ~~~~~~l~~ak~~l~~a~~~~~r~~~-L~~-~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 174 (331)
T PRK03598 110 AQARAAVKQAQAAYDYAQNFYNRQQG-LWK-SRTISANDLENARSSRDQAQATLKSAQDKLSQYREG 174 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445566666777766665554433 333 599999999999999998887777777777665443
No 165
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.10 E-value=8.3e+02 Score=25.44 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=57.1
Q ss_pred hHHHHHHHHhhhhhhhhccCcchhhhhh-HHHHHHch-HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005076 530 NIQQNIASFKQRIFFIDKRVPDLEAEKK-VAAAARNF-KEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTI 607 (715)
Q Consensus 530 ~IQQ~IasfKQki~Fidkr~peLEAEKk-vAaaaRnF-KEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~ 607 (715)
.+-.++..+|.=+ -.||.+++ +.|.+|+. ||..-|.++--.|+.|...+..+.++....-+.|=....+.=
T Consensus 64 ~l~eEledLk~~~-------~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 64 ALEEELEDLKTLA-------KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 3444555555433 35666654 44555554 567777777777777777777776666666666655666666
Q ss_pred HHHhhhhhhhhchhhHH
Q 005076 608 NRLQEIEGLISSKEKEV 624 (715)
Q Consensus 608 ~~lqe~EgLI~~KEkE~ 624 (715)
..|-+||-||.-++..+
T Consensus 137 ~Ql~~~e~l~~~~da~l 153 (193)
T PF14662_consen 137 RQLCEFESLICQRDAIL 153 (193)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77889999998877544
No 166
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=1.4e+03 Score=27.95 Aligned_cols=351 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHH
Q 005076 173 LRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSL 252 (715)
Q Consensus 173 lrsqIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~~l 252 (715)
+++.|...+++.-....-...-++.-.+.++.+.-+....=..|-.+...++- +-+-
T Consensus 259 ~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~-----------------------~~~~ 315 (698)
T KOG0978|consen 259 LFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLES-----------------------KSRD 315 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccc-----------------------hhHH
Q ss_pred HHHHHhhhhhhchhhhhHHHHHHHhhhh-hHhHHHHHHHHhhhhhhhHHHHHHHhhhhc----HHHHHHHHhhHhhhhhh
Q 005076 253 LIALRDAEAHCDAIDSKMYDVLVSQIAA-EQDCASLLDHFSADASNSADTFLKKAESLS----SEEMEKWLASTEALEGR 327 (715)
Q Consensus 253 l~aLrdAe~~~D~vD~kmq~vL~s~Iaa-EEE~A~LL~~FakdA~~~A~~~~k~A~~ls----skEme~W~ss~E~LE~K 327 (715)
+..|-+=-.++=+--..++.-+.+.... =++-..++...-+.-.++=|..-++.+.++ .-||-.-..+..-+++.
T Consensus 316 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~ 395 (698)
T KOG0978|consen 316 LESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQ 395 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHH
Q ss_pred hhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHH----HHHHHHHHHHhhhhhhhhhcchHHHHHHHHH
Q 005076 328 KIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTN----ELQKLLALVRDKEKEIAENDSNIRAVEERIS 403 (715)
Q Consensus 328 K~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~----ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs 403 (715)
--+|..+..--.|...=++.|+.-+.|-++.+.. ++..+..-++.+++.-- +.--.+-
T Consensus 396 -----------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-------~ll~e~~ 457 (698)
T KOG0978|consen 396 -----------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK-------CLLSEME 457 (698)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q ss_pred HHhhhhhhhhh------------------------hhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchH
Q 005076 404 IVVSDFQEYQS------------------------SINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLK 459 (715)
Q Consensus 404 ~VVS~F~e~Qs------------------------sId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLR 459 (715)
.+=+-|..+|+ +++.+|+.|-+..+.++.+--.|...-+-.-.-+..=+..+..|-
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 005076 460 ELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFK 539 (715)
Q Consensus 460 e~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfK 539 (715)
.-.+-...|-+.|+++++.-++.+--+.++.++ |---=++..+.+.-++.++.+.+.+|--.+-...-||.++..++
T Consensus 538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~---Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLED---LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhccCcchhhhhhHHHHHHchHH
Q 005076 540 QRIFFIDKRVPDLEAEKKVAAAARNFKE 567 (715)
Q Consensus 540 Qki~Fidkr~peLEAEKkvAaaaRnFKE 567 (715)
-|+.-+-+---.-.+--.++-..+|||+
T Consensus 615 ~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 615 RKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHh
No 167
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=24.04 E-value=1.4e+02 Score=33.88 Aligned_cols=70 Identities=29% Similarity=0.451 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhc
Q 005076 468 EAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDK 547 (715)
Q Consensus 468 EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidk 547 (715)
|..+|+=-|++=|-.+-. +|.+==++|-.-|+.|++++-.|..+|+-|--.+..+|-+|+ .|+.-.|||.
T Consensus 330 e~Rt~RPnvELCrD~AQ~---------~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~-~k~nsL~ID~ 399 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQY---------RLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA-IKANSLFIDR 399 (421)
T ss_pred HHcccCCchHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcchhccH
Confidence 455666666666666543 455555678888999999999999999999999999999997 7999999997
No 168
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.71 E-value=5.7e+02 Score=23.36 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=53.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcHH
Q 005076 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (715)
Q Consensus 233 e~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lssk 312 (715)
+|-++|.+.|..+++-+......+.+++.... .+..|+..+++..-.+|..-.+.....|..=...
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~--------------~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~ 101 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQYEQQLA--------------SARKQAQAVIAEAEAEADKLAAEALAEAQAEAQA 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777766666666665554332 3567788888888888888888888888888888
Q ss_pred HHHHHHhhHh
Q 005076 313 EMEKWLASTE 322 (715)
Q Consensus 313 Eme~W~ss~E 322 (715)
.++.|...-+
T Consensus 102 ~~~~a~~~i~ 111 (140)
T PRK07353 102 SKEKARREIE 111 (140)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 169
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.57 E-value=8.3e+02 Score=25.25 Aligned_cols=100 Identities=25% Similarity=0.313 Sum_probs=58.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchH
Q 005076 487 LKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFK 566 (715)
Q Consensus 487 lKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFK 566 (715)
-|.|+-=.|+-+.||.|-.-++.....+. ..+|...++|.. ||-|+.-|--+
T Consensus 100 ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~--------------~~eqry~aLK~h------------AeekL~~ANee-- 151 (207)
T PF05010_consen 100 EKQKEVIEGYKKNEETLKKCIEEYEERLK--------------KEEQRYQALKAH------------AEEKLEKANEE-- 151 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH------------HHHHHHHHHHH--
Confidence 34444445566667666655544443332 233555555542 44555544333
Q ss_pred HHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhh
Q 005076 567 EAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQE----IEGLIS 618 (715)
Q Consensus 567 EAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe----~EgLI~ 618 (715)
|+.--+....|.-.++..|.|..+.++-|++.+...+...++ |+-||.
T Consensus 152 ----i~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 152 ----IAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred ----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566677888888888888888888887766655 666664
No 170
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=23.49 E-value=47 Score=25.01 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=26.2
Q ss_pred ccCcchhhhhhHHHHHHchHHHHHHHHHhhhhc
Q 005076 547 KRVPDLEAEKKVAAAARNFKEAARLAAEAKSLS 579 (715)
Q Consensus 547 kr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~ 579 (715)
+.+.+|+..+.-|+..-+|.+|++|=..-.+|.
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999877766654
No 171
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=23.35 E-value=51 Score=28.63 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred HHHchHHHHHHHHHhh
Q 005076 561 AARNFKEAARLAAEAK 576 (715)
Q Consensus 561 aaRnFKEAaRiAAEAK 576 (715)
...||+|||+|||.+.
T Consensus 18 ~~g~y~eAA~~AA~sP 33 (66)
T PF13838_consen 18 SQGQYEEAAKVAANSP 33 (66)
T ss_dssp HTT-HHHHHHHHHHSG
T ss_pred HcCCHHHHHHHHHhCc
Confidence 4689999999999986
No 172
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.33 E-value=1e+03 Score=26.10 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=21.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhHH-HHHhhhhhhHHHHHHHHHHHHHhhhhhh
Q 005076 339 NEARAVLNNSIEHSVEDDLREK-EILYKKKDILTNELQKLLALVRDKEKEI 388 (715)
Q Consensus 339 ~eAr~~Ln~sIEhsVEdDkrEK-eiL~KkkdvL~~ELe~LL~lVr~KE~EI 388 (715)
..|..-+|..++.-++.....+ .....-.+.|.+++.++=.-+...|.++
T Consensus 134 ~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l 184 (498)
T TIGR03007 134 ELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRL 184 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444332211 1222334455555555544444444444
No 173
>PRK07883 hypothetical protein; Validated
Probab=23.12 E-value=93 Score=35.49 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 005076 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (715)
Q Consensus 216 h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek 249 (715)
-..|+.+.+.|.++.|||+|-++-|.+.+++.=.
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 441 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLRAL 441 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998643
No 174
>smart00150 SPEC Spectrin repeats.
Probab=23.04 E-value=3.9e+02 Score=21.32 Aligned_cols=11 Identities=45% Similarity=1.075 Sum_probs=6.4
Q ss_pred HHHHHHHhhHh
Q 005076 312 EEMEKWLASTE 322 (715)
Q Consensus 312 kEme~W~ss~E 322 (715)
.++..|.+..+
T Consensus 8 ~~l~~Wl~~~e 18 (101)
T smart00150 8 DELEAWLSEKE 18 (101)
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 175
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=23.01 E-value=1e+03 Score=26.07 Aligned_cols=309 Identities=24% Similarity=0.272 Sum_probs=165.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhcH-------HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhh
Q 005076 285 ASLLDHFSADASNSADTFLKKAESLSS-------EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDL 357 (715)
Q Consensus 285 A~LL~~FakdA~~~A~~~~k~A~~lss-------kEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDk 357 (715)
|.-|.+=++...+.++..-+..+.-+. .+|..|.. .|+..--++..|...+...|..|+..+++.-.+-.
T Consensus 19 s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~---eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~ 95 (384)
T PF03148_consen 19 SERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKN---ELERELEELDEEIDLLEEEKRRLEKALEALRKPLS 95 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 444555555555566665555555544 46777865 57777778999999999999999999998876654
Q ss_pred hHHHHHhhhh-----hhHHHHHHHHHHHHHhhhhhhhh-----hcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHH--
Q 005076 358 REKEILYKKK-----DILTNELQKLLALVRDKEKEIAE-----NDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQS-- 425 (715)
Q Consensus 358 rEKeiL~Kkk-----dvL~~ELe~LL~lVr~KE~EIAe-----Nd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs-- 425 (715)
-=.+-|.-+. |...++.+.-| .||.++=+ ....|+.+.+.|...-+-.+....++--|...+.=
T Consensus 96 i~~ecL~~R~~R~~~dlv~D~ve~eL----~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~ 171 (384)
T PF03148_consen 96 IAQECLSLREKRPGIDLVHDEVEKEL----LKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDT 171 (384)
T ss_pred HHHHHHHHHhCCCCcccCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444222 12222222222 12222211 12234555555555555555555555444432221
Q ss_pred HHHhhhhhhHHhhhhhH--HH-hHhhhhhhhcccchHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 005076 426 IISQLNLESEAMSMKKK--EI-DKFLNDEVDRGTKLKELARVSADE-AKEYWEVVELRRSLMSSILKSREDKVKLAKTEE 501 (715)
Q Consensus 426 ~lsq~~letEaL~~Kkk--eI-D~fl~~ee~~gakLRe~~~~s~~E-Ak~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EE 501 (715)
....++.-+-.++.|-. -+ +.+.+.+. --.+.+..-.. .+..+.++.||..+.+.|-..+.|=-.
T Consensus 172 ~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~-----W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~------ 240 (384)
T PF03148_consen 172 QCLSLNNNSTNISYKPGSTRIPKNSSTPES-----WEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRA------ 240 (384)
T ss_pred HHHhCCCccCCCcccCCcccccccCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 11122222222322211 01 11111111 11111111112 245677888998888777777665221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHH---HHch-------HH--HH
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAA---ARNF-------KE--AA 569 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaa---aRnF-------KE--Aa 569 (715)
.-..-=-.|++-|.......++|-..+..+.++|+....-|.-+.+-+-+-++=-|||-+ .|++ .. --
T Consensus 241 Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~ 320 (384)
T PF03148_consen 241 QADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQY 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHH
Confidence 112222356777777777777777888888888888777665554444444444455442 2222 11 12
Q ss_pred HHHHHhhhhccchhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 005076 570 RLAAEAKSLSVEKDGLQQEMEKAVLELE-------KLEENIEDTINRLQ 611 (715)
Q Consensus 570 RiAAEAKaL~~EKe~~~~~leka~~eLe-------~~E~~I~~t~~~lq 611 (715)
++..|++.|..=...|+.+|..|...|. .||++|....+.|.
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776665 45666666655553
No 176
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.97 E-value=5.2e+02 Score=25.74 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchh
Q 005076 506 EVQTLQQEASAARASLQELSSTKS--NIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKD 583 (715)
Q Consensus 506 dvQ~lrQevS~AR~SLQElSS~ks--~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe 583 (715)
+--.|++|.+.|+.++..+++++. .|++.+.+.+..|.---+-++-| -. .|-|.-
T Consensus 32 ~~~LF~~Qf~~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L-------~~-~d~~kv--------------- 88 (146)
T PF05852_consen 32 SSSLFRAQFQFTKKSLRSHNSLREECEIKNKVSSLETEISEKKKELSHL-------KK-FDRKKV--------------- 88 (146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-cCHHHH---------------
Confidence 345799999999999999999875 46666666665554322211111 00 233332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005076 584 GLQQEMEKAVLELEKLEENIEDTINRLQ 611 (715)
Q Consensus 584 ~~~~~leka~~eLe~~E~~I~~t~~~lq 611 (715)
..+|+-+-....|.++|...++.++
T Consensus 89 ---~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 89 ---EDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667777888999999886
No 177
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.82 E-value=8.9e+02 Score=26.24 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=30.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhhh--------hhhHHhhhhhcCChHHHHHHHHHHHHh
Q 005076 612 EIEGLISSKEKEVAMARFQRLRIVAGA--------ATAERSAALELGDLEEANLLLAEAEAA 665 (715)
Q Consensus 612 e~EgLI~~KEkE~Ama~~qrLrL~a~a--------ArAEr~aA~E~~D~EEa~lL~aEAeAA 665 (715)
...+||..-||-.-++.|-|++|.--- .|.- -+-.+.++.++.+|+.+
T Consensus 203 ~f~Al~E~aEK~~Ila~~gk~Ll~lldd~pv~PG~~r~~------Y~g~~~t~qIl~dAe~~ 258 (271)
T PF13805_consen 203 KFDALIERAEKQAILAEYGKRLLELLDDTPVVPGDTRPP------YDGYEQTRQILNDAERA 258 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS------TTS-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC------CCChhHHHHHHHHHHHH
Confidence 357889999999999999999886421 1111 11235567777777654
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.66 E-value=7.6e+02 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=8.5
Q ss_pred hhhhhhcchHHHHHHHHHHHhh
Q 005076 386 KEIAENDSNIRAVEERISIVVS 407 (715)
Q Consensus 386 ~EIAeNd~~I~aV~erIs~VVS 407 (715)
.++.....++..+..+|..+-.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~ 84 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRK 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444333333
No 179
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=21.57 E-value=6.5e+02 Score=26.22 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=54.1
Q ss_pred chHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 005076 457 KLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIA 536 (715)
Q Consensus 457 kLRe~~~~s~~EAk~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~Ia 536 (715)
-|+.+.+..--++...+.-|+-||-=+-+ -|+|.+|. .|++|-.....|-+..-.|...+|.+.++-..--++..
T Consensus 118 pL~~~le~dik~i~k~RKkLe~rRLdyD~-~K~r~~k~----~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~ 192 (223)
T cd07614 118 PLQNLCDKDLKEIQHHLKKLEGRRLDFDY-KKKRQGKI----PDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLS 192 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 36666666666666677777776655544 57777663 48999999999999999999999999887544333333
No 180
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.12 E-value=1.5e+03 Score=27.23 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 005076 601 ENIEDTINRLQEIEGLISS 619 (715)
Q Consensus 601 ~~I~~t~~~lqe~EgLI~~ 619 (715)
+..+.--|.|++..|.|-+
T Consensus 300 ~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHhhcCceE
Confidence 5555667889999999975
No 181
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.02 E-value=1.1e+03 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 005076 504 SAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF 543 (715)
Q Consensus 504 ~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~ 543 (715)
..+++-+++++++.|+-|-++--..+.|...|..+|.|+-
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999873
No 182
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=20.82 E-value=1.1e+02 Score=36.56 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHH
Q 005076 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQ 250 (715)
Q Consensus 217 ~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek~ 250 (715)
..|+++.+.|+++.|||+|-++-|.|.+++.=.+
T Consensus 204 ~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~~ 237 (694)
T PRK14666 204 DALRTEMEAASEALEFERAAVLRDQIRAVERTVE 237 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999886433
No 183
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=20.74 E-value=1.1e+02 Score=35.42 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHH
Q 005076 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAET 247 (715)
Q Consensus 217 ~~LE~eLEeACEaEDFe~AeriSdsLAa~EK 247 (715)
..|+.+.+.|++..+||.|-++-|.|.++++
T Consensus 202 ~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 202 DPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999985
No 184
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.47 E-value=5.8e+02 Score=24.34 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHhhhhhhhhccC
Q 005076 503 LSAEVQTLQQEASAARASLQELSSTK--SNIQQNIASFKQRIFFIDKRV 549 (715)
Q Consensus 503 l~~dvQ~lrQevS~AR~SLQElSS~k--s~IQQ~IasfKQki~Fidkr~ 549 (715)
|..+++.|+++++..++-|..|++.- ..++..|..+++.+.=+..|+
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777666666654 234455555555544444333
No 185
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.27 E-value=8.5e+02 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHhHHHHHHhhhhhhhhhhhh
Q 005076 333 IESHLVNEARAVLNNSIEHSVE 354 (715)
Q Consensus 333 iEs~~v~eAr~~Ln~sIEhsVE 354 (715)
.+..-+..++..|..-|+..++
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555
No 186
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.25 E-value=9.7e+02 Score=24.78 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccc
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVE 581 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~E 581 (715)
.|..++|.|+.....-+..+..+...++++.++... -+-+...++.+++.+...
T Consensus 72 ~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~----------------l~~~~~~~~~~l~~~~~~---------- 125 (256)
T PF14932_consen 72 ALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSE----------------LEGKEEEAQKKLKKAQKE---------- 125 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHH----------
Confidence 455555555555555555555555555555544432 233446677777777654
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005076 582 KDGLQQEMEKAVLELEKLEENIEDTINRLQE 612 (715)
Q Consensus 582 Ke~~~~~leka~~eLe~~E~~I~~t~~~lqe 612 (715)
+...+.+-..+|+.+=.++..++.-+..
T Consensus 126 ---l~~~~~k~~~~l~~l~~~v~~l~~~~~~ 153 (256)
T PF14932_consen 126 ---LSAECSKLNNELNQLLGEVSKLASELAH 153 (256)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555443
Done!