Query 005076
Match_columns 715
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 14:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.7 0.022 7.6E-07 50.6 29.3 36 580-615 216-251 (284)
2 1c1g_A Tropomyosin; contractIl 97.4 0.057 2E-06 47.9 27.6 33 370-402 25-57 (284)
3 1i84_S Smooth muscle myosin he 96.8 0.0024 8.1E-08 73.6 8.7 12 165-176 778-789 (1184)
4 3na7_A HP0958; flagellar bioge 93.2 5.9 0.0002 38.5 17.9 53 501-553 63-117 (256)
5 2dfs_A Myosin-5A; myosin-V, in 88.3 3.3 0.00011 48.3 12.6 27 499-525 954-980 (1080)
6 3na7_A HP0958; flagellar bioge 86.2 19 0.00064 35.0 14.8 25 249-273 6-30 (256)
7 3vkg_A Dynein heavy chain, cyt 85.9 42 0.0014 43.9 21.3 211 398-623 1860-2087(3245)
8 1e52_A Excinuclease ABC subuni 81.9 1.2 3.9E-05 36.8 3.6 33 216-248 26-58 (63)
9 3oja_B Anopheles plasmodium-re 71.0 60 0.002 33.7 13.7 80 523-614 499-578 (597)
10 3vkg_A Dynein heavy chain, cyt 69.2 2.1E+02 0.0073 37.7 20.4 49 478-526 1918-1966(3245)
11 3oja_B Anopheles plasmodium-re 68.5 62 0.0021 33.6 13.2 18 387-404 457-474 (597)
12 3s84_A Apolipoprotein A-IV; fo 65.7 1.1E+02 0.0039 30.5 18.6 66 516-609 202-271 (273)
13 2dfs_A Myosin-5A; myosin-V, in 65.4 26 0.0009 41.0 10.6 68 371-438 976-1043(1080)
14 3oja_A Leucine-rich immune mol 61.1 57 0.0019 33.4 11.1 39 487-525 356-394 (487)
15 1l8d_A DNA double-strand break 60.9 76 0.0026 26.8 10.7 85 513-604 11-102 (112)
16 2p22_C Protein SRN2; endosome, 59.9 81 0.0028 30.4 11.3 34 417-450 127-166 (192)
17 3ghg_A Fibrinogen alpha chain; 57.3 56 0.0019 36.5 10.7 36 387-422 125-160 (562)
18 2jee_A YIIU; FTSZ, septum, coi 54.3 31 0.0011 29.9 6.6 51 492-542 20-71 (81)
19 2fxo_A Myosin heavy chain, car 52.7 1.3E+02 0.0043 26.9 11.9 77 382-461 9-88 (129)
20 1gp8_A Protein (scaffolding pr 50.5 16 0.00056 28.3 3.8 30 213-242 7-36 (40)
21 1cii_A Colicin IA; bacteriocin 50.2 43 0.0015 37.2 8.3 88 338-427 303-390 (602)
22 2b5u_A Colicin E3; high resolu 46.8 2.1E+02 0.0071 32.0 13.0 159 489-689 305-469 (551)
23 3ghg_A Fibrinogen alpha chain; 45.1 90 0.0031 34.9 9.9 111 411-539 50-162 (562)
24 2v71_A Nuclear distribution pr 43.8 2.4E+02 0.0082 27.5 16.2 53 500-552 58-114 (189)
25 2d7d_A Uvrabc system protein B 42.9 11 0.00039 40.9 2.7 34 215-248 627-660 (661)
26 2v4h_A NF-kappa-B essential mo 42.5 64 0.0022 29.4 7.0 78 506-595 25-105 (110)
27 1d7m_A Cortexillin I; coiled-c 41.6 1.2E+02 0.0042 27.1 8.5 56 348-410 8-63 (101)
28 2etd_A LEMA protein; bromodoma 40.7 1.7E+02 0.0056 27.6 9.8 72 495-571 47-132 (171)
29 3edv_A Spectrin beta chain, br 39.9 2.5E+02 0.0085 26.6 21.9 46 369-418 10-57 (323)
30 3u1c_A Tropomyosin alpha-1 cha 39.2 1.4E+02 0.0049 25.7 8.5 48 578-625 42-89 (101)
31 2w96_A G1/S-specific cyclin-D1 38.7 15 0.0005 35.5 2.4 100 409-508 45-149 (271)
32 2pjw_V Vacuolar protein sortin 37.4 70 0.0024 28.0 6.2 45 471-515 38-86 (91)
33 2l5g_B Putative uncharacterize 36.6 51 0.0017 25.9 4.6 35 581-615 3-37 (42)
34 1m1j_C Fibrinogen gamma chain; 35.0 1.8E+02 0.0061 31.1 10.0 40 411-450 31-70 (409)
35 1m1j_B Fibrinogen beta chain; 34.8 2.4E+02 0.0084 30.6 11.2 104 495-619 90-193 (464)
36 3mq9_A Bone marrow stromal ant 33.3 4E+02 0.014 27.0 13.3 97 480-605 372-468 (471)
37 2v4h_A NF-kappa-B essential mo 32.5 2E+02 0.007 26.2 8.6 38 505-542 62-106 (110)
38 3l8r_A PTCA, putative PTS syst 30.9 91 0.0031 28.5 6.1 57 623-680 22-81 (120)
39 2jee_A YIIU; FTSZ, septum, coi 30.4 1.3E+02 0.0044 26.1 6.7 67 345-411 11-80 (81)
40 3plt_A Sphingolipid long chain 30.4 1.1E+02 0.0039 30.7 7.3 117 515-665 100-224 (234)
41 1l8d_A DNA double-strand break 28.4 2E+02 0.0069 24.2 7.6 25 368-392 13-37 (112)
42 3edv_A Spectrin beta chain, br 27.2 4E+02 0.014 25.1 20.5 32 396-427 188-219 (323)
43 2p22_C Protein SRN2; endosome, 25.5 4.2E+02 0.014 25.5 10.0 22 249-270 130-151 (192)
44 2b9c_A Striated-muscle alpha t 24.6 3.4E+02 0.012 25.1 8.9 89 523-614 28-121 (147)
45 3tnu_B Keratin, type II cytosk 24.1 1.7E+02 0.0058 25.9 6.5 64 373-436 37-100 (129)
46 1ic2_A Tropomyosin alpha chain 24.0 2.8E+02 0.0096 22.9 7.5 60 553-615 17-76 (81)
47 2b3g_B Cellular tumor antigen 23.7 32 0.0011 24.8 1.5 13 308-320 12-24 (28)
48 1vyk_A Oxygen-evolving enhance 22.3 4.2E+02 0.014 24.8 9.1 62 170-237 71-132 (149)
49 3f31_A Spectrin alpha chain, b 21.3 2.2E+02 0.0075 24.9 6.7 58 374-431 80-137 (149)
50 2b5u_A Colicin E3; high resolu 20.9 5.5E+02 0.019 28.8 10.9 62 585-677 319-380 (551)
51 1w98_B Cyclin E, G1/S-specific 20.7 71 0.0024 31.2 3.7 100 408-508 37-143 (283)
52 1m1j_C Fibrinogen gamma chain; 20.7 6.3E+02 0.022 26.9 11.1 39 496-541 29-67 (409)
53 3tso_C RAB11 family-interactin 20.5 1.1E+02 0.0038 26.4 4.3 42 375-416 17-58 (75)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.72 E-value=0.022 Score=50.56 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=15.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 580 VEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 580 ~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
.+...+...+......+..++..+...-..+..+.+
T Consensus 216 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (284)
T 1c1g_A 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.43 E-value=0.057 Score=47.93 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHH
Q 005076 370 LTNELQKLLALVRDKEKEIAENDSNIRAVEERI 402 (715)
Q Consensus 370 L~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erI 402 (715)
|..+|..+-.-+...+.++......+......+
T Consensus 25 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 25 AEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.79 E-value=0.0024 Score=73.62 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=6.2
Q ss_pred ChhhhHHHHHHH
Q 005076 165 DPHQRFEYLRSV 176 (715)
Q Consensus 165 ~~~~rl~~lrsq 176 (715)
|.-..|+.+|..
T Consensus 778 g~l~~LE~~r~~ 789 (1184)
T 1i84_S 778 GVLAHLEEERDL 789 (1184)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444446666553
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.17 E-value=5.9 Score=38.48 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHhhhhhhhhccCcchh
Q 005076 501 EKLSAEVQTLQQEASAARASLQELSSTK--SNIQQNIASFKQRIFFIDKRVPDLE 553 (715)
Q Consensus 501 Eel~~dvQ~lrQevS~AR~SLQElSS~k--s~IQQ~IasfKQki~Fidkr~peLE 553 (715)
.++-.+|..+++.+...+.-|...++.| ..++.+|.+.+.++.+.++.+=++.
T Consensus 63 ~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 63 SKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888887776655 5788999999999999888764443
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.26 E-value=3.3 Score=48.33 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 499 TEEKLSAEVQTLQQEASAARASLQELS 525 (715)
Q Consensus 499 ~EEel~~dvQ~lrQevS~AR~SLQElS 525 (715)
+++++.+++..|+.++.+-+...+|..
T Consensus 954 ~~~~~~~e~~~L~~~l~~le~~~~e~~ 980 (1080)
T 2dfs_A 954 LEITYSTETEKLRSDVERLRMSEEEAK 980 (1080)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666555555555444444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.19 E-value=19 Score=34.98 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhhhchhhhhHHHH
Q 005076 249 QQSLLIALRDAEAHCDAIDSKMYDV 273 (715)
Q Consensus 249 k~~ll~aLrdAe~~~D~vD~kmq~v 273 (715)
+...|.-|-.-+...|.+...+.+.
T Consensus 6 ~L~~L~~LQ~lD~~i~~l~~~~~~l 30 (256)
T 3na7_A 6 HLKQLIEISHLDKEIDSLEPLIREK 30 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666665555553
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.86 E-value=42 Score=43.88 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhchh---------hHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHH
Q 005076 398 VEERISIVVSDFQEYQSSINAKYD---------SLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADE 468 (715)
Q Consensus 398 V~erIs~VVS~F~e~QssId~k~~---------~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~E 468 (715)
+.+.|......||.+=..+..+|- .=.+=|.-+++=..-+..|+++|..-...=+.-=.||.+...
T Consensus 1860 ~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~----- 1934 (3245)
T 3vkg_A 1860 HRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEA----- 1934 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345666666677766555544432 345667777777778888888887765554444445554321
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhh
Q 005076 469 AKEYWEVVELRRSLMSSILKSREDKVKLAKTE-EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIF-FID 546 (715)
Q Consensus 469 Ak~~qe~V~lRr~l~ssIlKSrEdk~~L~k~E-Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~-Fid 546 (715)
+|-+++..|... +-.+.-.+.| +++.+.|..-++++..-+...++....-..++.+|+..|...- =.+
T Consensus 1935 -----~V~~l~~~L~~~-----~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~ 2004 (3245)
T 3vkg_A 1935 -----QVKDLQVSLAQK-----NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLE 2004 (3245)
T ss_dssp -----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222111 0000000001 1233333333333333333333332222222333333222210 001
Q ss_pred ccCcchhhhhhHHHHHHchHHHHHH----HHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ch
Q 005076 547 KRVPDLEAEKKVAAAARNFKEAARL----AAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLIS--SK 620 (715)
Q Consensus 547 kr~peLEAEKkvAaaaRnFKEAaRi----AAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~--~K 620 (715)
+-.|.-=-..+++.|..+.++|-.- -++-+.+......++.+.+.+..+-+.|+.+++.+-.||+-.+.||. .-
T Consensus 2005 ~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2005 KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1122211223444555555444332 34445667777889999999999999999999999999999999984 44
Q ss_pred hhH
Q 005076 621 EKE 623 (715)
Q Consensus 621 EkE 623 (715)
||+
T Consensus 2085 Ek~ 2087 (3245)
T 3vkg_A 2085 ERG 2087 (3245)
T ss_dssp HHH
T ss_pred ccc
Confidence 443
No 8
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=81.91 E-value=1.2 Score=36.77 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 005076 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (715)
Q Consensus 216 h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKe 248 (715)
-..|++++.+|++..|||.|-+|-|-+.++++.
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999865
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.97 E-value=60 Score=33.73 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=44.8
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHH
Q 005076 523 ELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEEN 602 (715)
Q Consensus 523 ElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~ 602 (715)
++...+..+.+.+...+++...+.... .+--++....-.+.+.+..|.+.++..++.....++.+.++
T Consensus 499 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 499 GLARSSDNLNKVFTHLKERQAFKLRET------------QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhhhhhhHHHH------------HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 555566666666666666554433211 11111222333445666667777777777777777767666
Q ss_pred HHHHHHHHhhhh
Q 005076 603 IEDTINRLQEIE 614 (715)
Q Consensus 603 I~~t~~~lqe~E 614 (715)
+..+..+|++.+
T Consensus 567 ~~~~~~~~~~l~ 578 (597)
T 3oja_B 567 TSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.19 E-value=2.1e+02 Score=37.70 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005076 478 LRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSS 526 (715)
Q Consensus 478 lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS 526 (715)
.++.|-.-+-|-.+-.....+|.++|..--..|.+...+|...|+++..
T Consensus 1918 ~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1918 EQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555556665555666666666666666654
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.52 E-value=62 Score=33.61 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=8.5
Q ss_pred hhhhhcchHHHHHHHHHH
Q 005076 387 EIAENDSNIRAVEERISI 404 (715)
Q Consensus 387 EIAeNd~~I~aV~erIs~ 404 (715)
++.+.+..|+.+++++..
T Consensus 457 e~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 12
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=65.66 E-value=1.1e+02 Score=30.47 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHH-
Q 005076 516 AARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVL- 594 (715)
Q Consensus 516 ~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~- 594 (715)
..+.+|++++ ..|+|.+..|++++ +|--| +|..+ +.-.-+.++.++..-..
T Consensus 202 ~l~~~l~~~~---~~~~qq~e~f~~~~------~p~~e----------~~~~~---------l~~~~e~l~~~l~~~~~~ 253 (273)
T 3s84_A 202 GLQKSLAELG---GHLDQQVEEFRRRV------EPYGE----------NFNKA---------LVQQMEQLRQKLGPHAGD 253 (273)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH------TTHHH----------HHHHH---------HHHHHHHHHHHHSCC---
T ss_pred HHHHhHHHHH---HHHHHHHHHHHHHh------HhhHH----------HHHHH---------HHHHHHHHHHHhCcchhh
Confidence 4567777777 67899999999997 45422 33322 33334455555533333
Q ss_pred ---HHHHHHHHHHHHHHH
Q 005076 595 ---ELEKLEENIEDTINR 609 (715)
Q Consensus 595 ---eLe~~E~~I~~t~~~ 609 (715)
.|.-+|+|+.+.++.
T Consensus 254 ~~~~~~~~~~d~~~~~~~ 271 (273)
T 3s84_A 254 VEGHLSFLEKDLRDKVNS 271 (273)
T ss_dssp ------------------
T ss_pred HHhhhhHHHHHHHHHhhc
Confidence 344577787777764
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.40 E-value=26 Score=40.98 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhh
Q 005076 371 TNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMS 438 (715)
Q Consensus 371 ~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~ 438 (715)
..|+..+-..|+..+.||++.+..++.....-...-......+.++..|+++|++...++.++-+.|.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666555555544444444444444444555555555555555555554444
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.15 E-value=57 Score=33.39 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005076 487 LKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELS 525 (715)
Q Consensus 487 lKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElS 525 (715)
-+.+.+|+.|...+.++.+.+...|......+..+|+.-
T Consensus 356 ~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 394 (487)
T 3oja_A 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence 345667777888888888888888888887777776653
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.87 E-value=76 Score=26.82 Aligned_cols=85 Identities=14% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhc---cCc----chhhhhhHHHHHHchHHHHHHHHHhhhhccchhhh
Q 005076 513 EASAARASLQELSSTKSNIQQNIASFKQRIFFIDK---RVP----DLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGL 585 (715)
Q Consensus 513 evS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidk---r~p----eLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~ 585 (715)
+....+.-|.+|-+.+..+.+.|..+++.+.|.++ .-| .+..+.+. .--..+-.+.+.+..+...+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~-------~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHRE-------ELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 44555667777778888899999999999999877 223 23322111 11123334444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005076 586 QQEMEKAVLELEKLEENIE 604 (715)
Q Consensus 586 ~~~leka~~eLe~~E~~I~ 604 (715)
...+.....+++.++..|.
T Consensus 84 ~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 16
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=59.88 E-value=81 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.9
Q ss_pred hhchhhHHHHHHhhhhhhHHhhhh------hHHHhHhhhh
Q 005076 417 NAKYDSLQSIISQLNLESEAMSMK------KKEIDKFLND 450 (715)
Q Consensus 417 d~k~~~Lqs~lsq~~letEaL~~K------kkeID~fl~~ 450 (715)
+.=|.+||...++.+.++++|.-+ ..+||.||..
T Consensus 127 ~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 127 IALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 444678999999999999998753 3456666543
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.28 E-value=56 Score=36.47 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=27.8
Q ss_pred hhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhh
Q 005076 387 EIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDS 422 (715)
Q Consensus 387 EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~ 422 (715)
+|..+-++|+.+|..|.++|+..+-.-.+||+|+..
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666788888888888888888888888877544
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.27 E-value=31 Score=29.88 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=29.5
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh
Q 005076 492 DKVKLAKTE-EKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRI 542 (715)
Q Consensus 492 dk~~L~k~E-Eel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki 542 (715)
|.|.|++|| ++|-+.-..|.+++..+|.+-..+-..-..++|+..++..||
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776 345555666666666666555445445555555555555554
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.70 E-value=1.3e+02 Score=26.86 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=40.3
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhh---hhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccch
Q 005076 382 RDKEKEIAENDSNIRAVEERISIVVSDFQEYQS---SINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKL 458 (715)
Q Consensus 382 r~KE~EIAeNd~~I~aV~erIs~VVS~F~e~Qs---sId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakL 458 (715)
-..+.|++.-+..|+.+.+++..+-....+... .+...++.|+. ++..+++.+.-+-.-.+.++...-+-..+|
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~---qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL---QVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766665554433 33344444443 334455554444444444444444444444
Q ss_pred HHH
Q 005076 459 KEL 461 (715)
Q Consensus 459 Re~ 461 (715)
.++
T Consensus 86 ~el 88 (129)
T 2fxo_A 86 KEM 88 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=50.47 E-value=16 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHhhhhhchHHHHHHhHHH
Q 005076 213 SLRHSQLEKQLDEACEAEDFEAAQRISDLL 242 (715)
Q Consensus 213 s~~h~~LE~eLEeACEaEDFe~AeriSdsL 242 (715)
+.+-.+||.|...||--||||++..+-.-|
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346688999999999999999998765444
No 21
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=50.22 E-value=43 Score=37.17 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=70.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhh
Q 005076 338 VNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSIN 417 (715)
Q Consensus 338 v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId 417 (715)
|-+-|..||+.+-|+--|+++ .||.-+.-|.|+|.+.+=...+.-=+|-...+.++-..+..|+.++|.-.-.|+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvS 380 (602)
T 1cii_A 303 VIDNRANLNYLLSHSGLDYKR--NILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLS 380 (602)
T ss_dssp EECCHHHHHHHHTSCHHHHHH--HTSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhHHhhccchhhhh--hhhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588999999999999986 699999999999999987777666566666677888888899999888877777777
Q ss_pred hchhhHHHHH
Q 005076 418 AKYDSLQSII 427 (715)
Q Consensus 418 ~k~~~Lqs~l 427 (715)
..-+..|...
T Consensus 381 a~t~e~k~A~ 390 (602)
T 1cii_A 381 ARTNEQKHAN 390 (602)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666543
No 22
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=46.85 E-value=2.1e+02 Score=31.99 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=92.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHH-HHHchHH
Q 005076 489 SREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAA-AARNFKE 567 (715)
Q Consensus 489 SrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAa-aaRnFKE 567 (715)
.|++...+.+-+|....+..+.|+++..|-.+.-++++|..+-||=|.+.|--+--++|-+-++.++++--- .+|+.=+
T Consensus 305 r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 305 RRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTS
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhh
Confidence 355666667777777778888899988888888888888788888888888777666666655555443221 3333344
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhh
Q 005076 568 AARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAATAERSAAL 647 (715)
Q Consensus 568 AaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~ 647 (715)
|+ |-.-+.+....+...+|.+. + .+.|--+-=--..|.++++.|+
T Consensus 385 ~G----------------h~~w~~~~~~~~~~~~dv~~----------------~---~a~~d~~~~~~s~~~~~ls~~m 429 (551)
T 2b5u_A 385 GG----------------HRMWQMAGLKAQRAQTDVNN----------------K---QAAFDAAAKEKSDADAALSSAM 429 (551)
T ss_dssp TH----------------HHHHHHHHHHHHHHHHHHHH----------------H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----------------chhhhhccchhhhhhhhhhh----------------H---HHHHHHHhhcccchhhhhhhhh
Confidence 44 33444444333332222111 1 3444444333356778888888
Q ss_pred hcCChHHHHHHHHH--HHHhchHHHhhhh---cccccccccCCCccc
Q 005076 648 ELGDLEEANLLLAE--AEAAGQEAKKLEE---ANLKEEEFTNLPEHF 689 (715)
Q Consensus 648 E~~D~EEa~lL~aE--AeAAe~eA~~Lk~---y~~~~ed~~~~~~~~ 689 (715)
|.- -++| ...|++++.+-+. -+|+..+-.+.|-|=
T Consensus 430 e~R-------kq~e~k~k~ae~kl~~e~~kprkg~~~~~h~y~paP~ 469 (551)
T 2b5u_A 430 ESR-------KKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPK 469 (551)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHTTSSCCCCHHHHTTTSCCCCC
T ss_pred hcc-------cchhhhhhhhhhccchhhhCcccCcCCCCCccCCCCC
Confidence 832 2333 3345555544322 455555555555543
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.11 E-value=90 Score=34.89 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=65.3
Q ss_pred hhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchH-HHHHhcHHHHHHHHHHH-HHHHHHHHHHhh
Q 005076 411 EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLK-ELARVSADEAKEYWEVV-ELRRSLMSSILK 488 (715)
Q Consensus 411 e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLR-e~~~~s~~EAk~~qe~V-~lRr~l~ssIlK 488 (715)
.+|..|+..=-+|...+.+|..+-+.++-.+++|+.+...-.+ .|| .+..+. +.--.|.|+- +|||.+.- ||
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E---~Lr~rq~q~~-dNdNtynE~S~ELRRrIqy--LK 123 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIME---ILRGDFSSAN-NRDNTYNRVSEDLRSRIEV--LK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---TTSSHHHHHH-HHHHHHHHTTHHHHHHHHH--HH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH---HHHHHHHhhh-ccchhHHHHHHHHHHHHHH--HH
Confidence 4677788877888888999999999999999999998754433 343 333333 3334566655 78776532 22
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 005076 489 SREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFK 539 (715)
Q Consensus 489 SrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfK 539 (715)
. +....| +-|+.||.-|.+-|.-+|-| -.-|.-.|.++|
T Consensus 124 e--------kVdnQl-snIrvLQsnLedq~~kIQRL---EvDIdiqirsCK 162 (562)
T 3ghg_A 124 R--------KVIEKV-QHIQLLQKNVRAQLVDMKRL---EVDIDIKIRSCR 162 (562)
T ss_dssp H--------HHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHGG
T ss_pred H--------HHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcc
Confidence 1 122223 44455555554444444433 334555555554
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.81 E-value=2.4e+02 Score=27.50 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHhhhhhhhhccCcch
Q 005076 500 EEKLSAEVQTLQQEASAARASLQELSST----KSNIQQNIASFKQRIFFIDKRVPDL 552 (715)
Q Consensus 500 EEel~~dvQ~lrQevS~AR~SLQElSS~----ks~IQQ~IasfKQki~Fidkr~peL 552 (715)
.-.|...+..|..++-..|.-++..++- -+++|.+|+.++...--.-+++-+|
T Consensus 58 ~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 58 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444333 5556666666554443333333333
No 25
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=42.87 E-value=11 Score=40.93 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 005076 215 RHSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (715)
Q Consensus 215 ~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKe 248 (715)
--.+||+++.+|++..|||+|.++-|.+.++++.
T Consensus 627 ~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 627 VVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999988753
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=42.52 E-value=64 Score=29.45 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhc---cCcchhhhhhHHHHHHchHHHHHHHHHhhhhccch
Q 005076 506 EVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDK---RVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEK 582 (715)
Q Consensus 506 dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidk---r~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EK 582 (715)
+|.-|++++..|...|.+ -|.+|.-+|+.|.=.++ ++|=|++--.|- -..| +|.|=|-| .++.||
T Consensus 25 ei~~L~~~L~~AEeaL~~-------Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY--~~DF-~aERadRE--kl~~eK 92 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA-------KQELIDKLKEEAEQHKIVMETVPVLKAQADIY--KADF-QAERHARE--KLVEKK 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--HHHH-HHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-ccchhhHH--HHHhHH
Confidence 688899999999999987 57888888888877777 888887754443 3344 35554443 356666
Q ss_pred hhhHHHHHHHHHH
Q 005076 583 DGLQQEMEKAVLE 595 (715)
Q Consensus 583 e~~~~~leka~~e 595 (715)
+.++..+......
T Consensus 93 e~L~~ql~~Lq~q 105 (110)
T 2v4h_A 93 EYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544433
No 27
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.63 E-value=1.2e+02 Score=27.13 Aligned_cols=56 Identities=30% Similarity=0.506 Sum_probs=43.1
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhh
Q 005076 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQ 410 (715)
Q Consensus 348 sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~ 410 (715)
+++.+.|..|-=++-|-|.|+ ||+.+|+.++ .|-+.-+.+|..++-||-.+.-+..
T Consensus 8 ~le~sLe~EK~S~eeL~kQk~----eL~~~l~~l~---~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 8 GLENSLESEKVSREQLIKQKD----QLNSLLASLE---SEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 456667778888888888875 6777777664 5677778899999999998887765
No 28
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=40.72 E-value=1.7e+02 Score=27.62 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhh--------------hhhHHH
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEA--------------EKKVAA 560 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEA--------------EKkvAa 560 (715)
+.++-|.+++..|-.+|.++..+ +++++ +...|+.+.+.-.+|+-+--..|+|-| |.+++.
T Consensus 47 ~ya~hE~~tl~~v~~aR~~~~~~-~~~~~----~~~ae~~Ls~aL~~L~av~E~YP~LKan~~f~~Lq~eL~~~EnrIa~ 121 (171)
T 2etd_A 47 GYAAHEXEILEEIANARAXLIGA-XTPQE----SAQADAELSSALSRLLAIAENYPNLXADANFRQLMDELAGTENRIAV 121 (171)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHC-CSHHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhccc-CCHHH----HHHHHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHHHHHHHH
Confidence 34566777776666666555432 23333 456778888888888888888998755 777888
Q ss_pred HHHchHHHHHH
Q 005076 561 AARNFKEAARL 571 (715)
Q Consensus 561 aaRnFKEAaRi 571 (715)
|-|.|-+|.+.
T Consensus 122 ARr~YN~aV~~ 132 (171)
T 2etd_A 122 ARRDYNEAVXX 132 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87877777553
No 29
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=39.91 E-value=2.5e+02 Score=26.59 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHhhhhhhhhhhhhh
Q 005076 369 ILTNELQKLLALVRDKEKEIAEND--SNIRAVEERISIVVSDFQEYQSSINA 418 (715)
Q Consensus 369 vL~~ELe~LL~lVr~KE~EIAeNd--~~I~aV~erIs~VVS~F~e~QssId~ 418 (715)
.+..++++|+.-+..||......+ ..+..|+. ....|...+.+|..
T Consensus 10 ~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~----l~~~~~~f~~el~~ 57 (323)
T 3edv_A 10 QLNREVDDLEQWIAEREVVAGSHELGQDYEHVTM----LQERFREFARDTGN 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHH----HHHHHHHHHHHHHH
Confidence 356788889999999887664332 34555543 34457777766654
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.22 E-value=1.4e+02 Score=25.75 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=32.6
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHH
Q 005076 578 LSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVA 625 (715)
Q Consensus 578 L~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~A 625 (715)
+..|...|+-++.....+|+++++.+..+..+|.+.+....--|-++|
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~ 89 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777766655554443
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=38.69 E-value=15 Score=35.47 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred hhhhhhhhhhch-----hhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHH
Q 005076 409 FQEYQSSINAKY-----DSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLM 483 (715)
Q Consensus 409 F~e~QssId~k~-----~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee~~gakLRe~~~~s~~EAk~~qe~V~lRr~l~ 483 (715)
|.+.|.+|+.+. +=+.......++..+++.+.-+-+|.|++.-.-.+.++.-++-+|-.=|.-|.+.+-..=+-.
T Consensus 45 ~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~ 124 (271)
T 2w96_A 45 FKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKL 124 (271)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 455677776553 236777778888899999999999999998887888999999999999999988732111112
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHH
Q 005076 484 SSILKSREDKVKLAKTEEKLSAEVQ 508 (715)
Q Consensus 484 ssIlKSrEdk~~L~k~EEel~~dvQ 508 (715)
..+-...=.+-.+.+||..++..+.
T Consensus 125 ~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 125 CIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 2333334467778888888877643
No 32
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=37.44 E-value=70 Score=27.97 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH----HHHHHHH
Q 005076 471 EYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQ----TLQQEAS 515 (715)
Q Consensus 471 ~~qe~V~lRr~l~ssIlKSrEdk~~L~k~EEel~~dvQ----~lrQevS 515 (715)
.|+.++.+|-||+.+|-+....+-.|.-|=+||+.-+. +|.|+++
T Consensus 38 Ly~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~ 86 (91)
T 2pjw_V 38 LAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQLQ 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999998764 4555554
No 33
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.62 E-value=51 Score=25.85 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 581 EKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 581 EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
-||+|-.++++...|..+.|+.|..-=+++.++|.
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999988874
No 34
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.01 E-value=1.8e+02 Score=31.05 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=30.5
Q ss_pred hhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhh
Q 005076 411 EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLND 450 (715)
Q Consensus 411 e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ 450 (715)
..|..++..+..|...+.++..-|+..-..++.|......
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788888888888888888888777777777766544
No 35
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.77 E-value=2.4e+02 Score=30.62 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=56.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHH
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAE 574 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAE 574 (715)
.|+|.++.+-.+||.|...+ ++||-+-+++.+=|..++..+---++.+|+++. +|.--.-.+.+--..-
T Consensus 90 ~L~k~q~~V~~~LqeLe~~l-------~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n--~~~~~~~~~e~~~~~i-- 158 (464)
T 1m1j_B 90 TLLKQEKTVKPVLRDLKDRV-------AKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI--ILSEYNTEMELHYNYI-- 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhhHhHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHhhcccccccchhh--HHHHHHHHHHHHHHHH--
Confidence 46688888888888887766 444555556666666666666666666666654 2222111111110000
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 005076 575 AKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISS 619 (715)
Q Consensus 575 AKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~ 619 (715)
++-+ .....+.+..|+..|..-..+||.+|+.|..
T Consensus 159 -------~~~~---~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 159 -------KDNL---DNNIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp -------HHHH---HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1123455666666666667777777777643
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.25 E-value=4e+02 Score=27.04 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHH
Q 005076 480 RSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVA 559 (715)
Q Consensus 480 r~l~ssIlKSrEdk~~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvA 559 (715)
...+..+-+.=+.-+.=.+.+.+.....+.|||++++++..|+.+-..-+.---..-++..-| ||||+
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 439 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL------------DAEKA 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH------------HHHHH
Q ss_pred HHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q 005076 560 AAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIED 605 (715)
Q Consensus 560 aaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~ 605 (715)
.+....+|- +.+.-+-..+|+.++-+|+.
T Consensus 440 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 440 QGQKKVEEL-----------------EGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
No 37
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.45 E-value=2e+02 Score=26.21 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH-------HHHHHhhhhhhhhHHHHHHHHhhhh
Q 005076 505 AEVQTLQQEASAA-------RASLQELSSTKSNIQQNIASFKQRI 542 (715)
Q Consensus 505 ~dvQ~lrQevS~A-------R~SLQElSS~ks~IQQ~IasfKQki 542 (715)
+.|++|+||+--- |+.=..+-++|..++++++++..++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 6799999998643 3333445566777777777666554
No 38
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=30.85 E-value=91 Score=28.46 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccccc
Q 005076 623 EVAMARFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLKEE 680 (715)
Q Consensus 623 E~Ama~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~~e 680 (715)
+.-+.+|+ +.+-+|.||.-..-|+ ..||.++|+.++++|...=.+|-+.++-=++.|
T Consensus 22 ele~~~m~-II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT~Liq~E 81 (120)
T 3l8r_A 22 ELQVAAFE-IILNSGNARSIVHEAFDAMREKNYILAEQKLQEANDELLKAHQAQTDLLQEY 81 (120)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455664 8888999997655444 569999999999999999999999998444433
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.43 E-value=1.3e+02 Score=26.11 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhhhh---HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhh
Q 005076 345 LNNSIEHSVEDDLR---EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQE 411 (715)
Q Consensus 345 Ln~sIEhsVEdDkr---EKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e 411 (715)
|+.-|..+|+--.. |-+-|.-|...|..|.+.+-.-...+..|+...-......++||..++..+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444443333 66777888888999998888877778888888888899999999998877643
No 40
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.38 E-value=1.1e+02 Score=30.66 Aligned_cols=117 Identities=26% Similarity=0.298 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHH
Q 005076 515 SAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVL 594 (715)
Q Consensus 515 S~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~ 594 (715)
-....|||-+-.+|.+|+.+|..+|.|-- -..+++.||.|-.-+-+. -+.+||.=-| +.-
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraEae-------~lvaEAqL~n-----~kR------- 159 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAEAE-------SLVAEAQLSN-----ITR------- 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHH-------HHHHHHHHHH-----HHH-------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHH-------hhHHHHHHHH-----hHH-------
Confidence 34446777777888889999988887622 123444454443222111 1222221111 000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhh--------hhhhhHHhhhhhcCChHHHHHHHHHHHHh
Q 005076 595 ELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVA--------GAATAERSAALELGDLEEANLLLAEAEAA 665 (715)
Q Consensus 595 eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a--------~aArAEr~aA~E~~D~EEa~lL~aEAeAA 665 (715)
+++ +.... -...+||..-||-.=++.|-|++|.- |-.|..- +-.+.++.++.+|+.+
T Consensus 160 --~~l----KEa~~--~~f~Al~E~aEK~~ila~~gk~Ll~lldd~pv~PG~~r~~Y------~g~~~t~qi~~dAe~~ 224 (234)
T 3plt_A 160 --EKL----KAAYS--YMFDSLRELSEKFALIAGYGKALLELLDDSPVTPGEARPAY------DGYEASRQIIMDAESA 224 (234)
T ss_dssp --HHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSSCCCCC------CCHHHHHHHHHHHHHH
T ss_pred --HHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC------CChhHHHHHHHHHHHH
Confidence 111 11111 13567788889999999999999863 3333321 2246677777777754
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.41 E-value=2e+02 Score=24.19 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhc
Q 005076 368 DILTNELQKLLALVRDKEKEIAEND 392 (715)
Q Consensus 368 dvL~~ELe~LL~lVr~KE~EIAeNd 392 (715)
+-+..+|.+|-......+.+|....
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444344443333
No 42
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=27.23 E-value=4e+02 Score=25.15 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 005076 396 RAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (715)
Q Consensus 396 ~aV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (715)
..|+.+...|..++...+.-+...-..|+..+
T Consensus 188 ~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~ 219 (323)
T 3edv_A 188 DDIQKRENEVLEAWKSLLDACESRRVRLVDTG 219 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665555555544
No 43
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.54 E-value=4.2e+02 Score=25.49 Aligned_cols=22 Identities=5% Similarity=0.196 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhhhchhhhhH
Q 005076 249 QQSLLIALRDAEAHCDAIDSKM 270 (715)
Q Consensus 249 k~~ll~aLrdAe~~~D~vD~km 270 (715)
+++|-.+...+|..|+.|--..
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444
No 44
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.60 E-value=3.4e+02 Score=25.14 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=47.2
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhccCcchhhhhhHHH-----HHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHH
Q 005076 523 ELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAA-----AARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELE 597 (715)
Q Consensus 523 ElSS~ks~IQQ~IasfKQki~Fidkr~peLEAEKkvAa-----aaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe 597 (715)
+.+..-...+.-...+-+|-.--+-|+-.||..-|.|. |-|+|.|++|=- .-+..+.+......+.+.....
T Consensus 28 eaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl---~~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 28 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL---VIIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444455555555666666665554432 445555555411 1233444555566666666666
Q ss_pred HHHHHHHHHHHHHhhhh
Q 005076 598 KLEENIEDTINRLQEIE 614 (715)
Q Consensus 598 ~~E~~I~~t~~~lqe~E 614 (715)
.||++|..+.+.|...|
T Consensus 105 eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 105 ELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 77777777666665543
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.11 E-value=1.7e+02 Score=25.93 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHH
Q 005076 373 ELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEA 436 (715)
Q Consensus 373 ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEa 436 (715)
|+.+|=.-|...+.||...-+.....+..|..+=.+|..--.++..++..|.+.+.++..+.+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444445555555555555555556666666666666555566666777777777776655543
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.05 E-value=2.8e+02 Score=22.86 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHchHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 553 EAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 553 EAEKkvAaaaRnFKEAaRiAAEAKaL~~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
.|.-++..+-...+++ =..+..+..|...|+.++.....+|++.++....+..+|.+.+.
T Consensus 17 ~a~~~~~~~e~~l~~~---e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 17 NALDRAEQAEADKKAA---EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 47
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=23.71 E-value=32 Score=24.77 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.9
Q ss_pred hhcHHHHHHHHhh
Q 005076 308 SLSSEEMEKWLAS 320 (715)
Q Consensus 308 ~lsskEme~W~ss 320 (715)
-||...|+||+|-
T Consensus 12 mlspddi~qw~s~ 24 (28)
T 2b3g_B 12 MLSPDDIEQWFTE 24 (28)
T ss_dssp GCCHHHHHHHHHC
T ss_pred hcChHHHHHHhhc
Confidence 3789999999974
No 48
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=22.34 E-value=4.2e+02 Score=24.83 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHH
Q 005076 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQR 237 (715)
Q Consensus 170 l~~lrsqIs~KL~~~~q~aasvsa~Rk~~~~rRRKaaed~~~as~~h~~LE~eLEeACEaEDFe~Aer 237 (715)
...+|..|++|+.-.++-...|.+.- -..+|+.+.++...--.|.+ +|..|+...|-..|+.
T Consensus 71 W~~vrn~LR~~~~~Lr~Dl~~li~sl---p~~~kk~l~~La~~Lf~~le---~LD~AAr~kd~~~a~~ 132 (149)
T 1vyk_A 71 WPSLQNDLRLRASYLRYDLKTVISAK---PKDEKKSLQELTSKLFSSID---NLDHAAKIKSPTEAEK 132 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHH---HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCHHHHHH
Confidence 56789999999999999888887544 25677777666554444432 6788887777766665
No 49
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=21.30 E-value=2.2e+02 Score=24.93 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhh
Q 005076 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLN 431 (715)
Q Consensus 374 Le~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~ 431 (715)
+..++..-+.-|.||.-|..++..|...=...+..-|.....|..+++.|+..-..+.
T Consensus 80 v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~ 137 (149)
T 3f31_A 80 LQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLL 137 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4556666677788888888899888887777777767666777777777766554443
No 50
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.89 E-value=5.5e+02 Score=28.76 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHHhhhhhhhHHhhhhhcCChHHHHHHHHHHHH
Q 005076 585 LQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGAATAERSAALELGDLEEANLLLAEAEA 664 (715)
Q Consensus 585 ~~~~leka~~eLe~~E~~I~~t~~~lqe~EgLI~~KEkE~Ama~~qrLrL~a~aArAEr~aA~E~~D~EEa~lL~aEAeA 664 (715)
.+.++++|..||...++++...-+++-- +...|+-+| +++ .+||-++++|.+
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~------------t~~~~~~~~-------~~~---------~~~n~~~~~~~~ 370 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAK------------AVQVYNSRK-------SEL---------DAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-------HHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhH-------HHH---------HhhhhHHHHHHH
Confidence 3456888888888888887766555543 334444332 122 348999999887
Q ss_pred hchHHHhhhhccc
Q 005076 665 AGQEAKKLEEANL 677 (715)
Q Consensus 665 Ae~eA~~Lk~y~~ 677 (715)
.-+..-+||+
T Consensus 371 ---~~~~f~~~n~ 380 (551)
T 2b5u_A 371 ---EIKQFNRFAH 380 (551)
T ss_dssp ---HHHHHGGGTT
T ss_pred ---hhhhhhhhcc
Confidence 3344444555
No 51
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=20.73 E-value=71 Score=31.20 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=71.3
Q ss_pred hhhhhhhhhhhch-----hhHHHHHHhhhhhhHHhhhhhHHHhHhhhh-hhhcccchHHHHHhcHHHHHHHHHHHHH-HH
Q 005076 408 DFQEYQSSINAKY-----DSLQSIISQLNLESEAMSMKKKEIDKFLND-EVDRGTKLKELARVSADEAKEYWEVVEL-RR 480 (715)
Q Consensus 408 ~F~e~QssId~k~-----~~Lqs~lsq~~letEaL~~KkkeID~fl~~-ee~~gakLRe~~~~s~~EAk~~qe~V~l-Rr 480 (715)
+|-+.|..|+.+. +=+.......++..+++.+.-+-+|.|++. ..-++..+.-++-+|-.=|.-|.+..-. =+
T Consensus 37 ~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~ 116 (283)
T 1w98_B 37 HFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH 116 (283)
T ss_dssp TGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 3445577776443 337888888899999999999999999997 4567888999999999999999876211 11
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 005076 481 SLMSSILKSREDKVKLAKTEEKLSAEVQ 508 (715)
Q Consensus 481 ~l~ssIlKSrEdk~~L~k~EEel~~dvQ 508 (715)
.+. .+-...=.+-.+.+||..++..+.
T Consensus 117 ~~~-~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 117 QFA-YVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHH-HTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHcCCCCHHHHHHHHHHHHHHcC
Confidence 222 222223346778888888877653
No 52
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.69 E-value=6.3e+02 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 005076 496 LAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQR 541 (715)
Q Consensus 496 L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQk 541 (715)
|+|.|..+-.+++.|. ..|++++..++.+++=+.++|..
T Consensus 29 L~k~e~~V~~~l~~LE-------~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 29 FNKYRLTTDGELLEIE-------GLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666663 45778888888888888887766
No 53
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.49 E-value=1.1e+02 Score=26.40 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhh
Q 005076 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSI 416 (715)
Q Consensus 375 e~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssI 416 (715)
++|+.+|-..+.+|..-|.+|++.|.=|-+...+--|-.-+|
T Consensus 17 eELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 17 EEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 478888999999999999999999999999888776654443
Done!