Query 005076
Match_columns 715
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 14:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 60.0 8.6 0.00063 30.1 6.1 72 374-448 39-110 (114)
2 d1e52a_ a.2.9.1 (A:) C-termina 59.2 3.8 0.00028 31.2 3.6 35 215-249 18-52 (56)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 44.3 33 0.0024 27.7 7.4 34 502-535 5-38 (133)
4 d2e2aa_ a.7.2.1 (A:) Enzyme II 40.6 27 0.002 28.9 6.3 57 623-680 5-64 (104)
5 d1cuna2 a.7.1.1 (A:116-219) Sp 35.3 63 0.0046 24.1 7.3 72 356-427 28-103 (104)
6 d2etda1 a.29.9.1 (A:35-183) Hy 34.4 96 0.007 25.8 9.1 71 495-570 35-119 (149)
7 d1u5pa1 a.7.1.1 (A:1662-1771) 33.7 51 0.0037 24.7 6.6 51 377-427 40-90 (110)
8 d1u5pa2 a.7.1.1 (A:1772-1872) 32.2 62 0.0045 23.8 6.7 59 374-432 33-91 (101)
9 d2fzta1 a.46.3.1 (A:1-78) Hypo 28.6 12 0.0009 30.3 2.1 22 217-238 4-25 (78)
10 d1cuna2 a.7.1.1 (A:116-219) Sp 25.5 91 0.0066 23.1 6.7 62 372-433 30-91 (104)
11 d1s35a2 a.7.1.1 (A:1169-1273) 23.0 1.1E+02 0.0083 22.6 6.8 52 377-428 38-89 (105)
12 d2spca_ a.7.1.1 (A:) Spectrin 23.0 97 0.007 22.8 6.4 47 382-428 46-92 (107)
13 d1s35a1 a.7.1.1 (A:1063-1168) 20.7 1.4E+02 0.01 21.9 6.8 57 374-430 34-91 (106)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.00 E-value=8.6 Score=30.11 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhh
Q 005076 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFL 448 (715)
Q Consensus 374 Le~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl 448 (715)
++.+|...+.-+.||.-+..+|+.|...=..++..-|.....|..+++.|+..-..+.. .+.-++.+|++-|
T Consensus 39 ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~---~~~~R~~~Le~~i 110 (114)
T d1hcia4 39 LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLT---TIARTINEVETQI 110 (114)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 46777888888899999999999999888888888888888899998888887777653 3445666666543
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=59.22 E-value=3.8 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 005076 215 RHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (715)
Q Consensus 215 ~h~~LE~eLEeACEaEDFe~AeriSdsLAa~EKek 249 (715)
.-+.||++..+|.+.-|||.|-+|-|-+..+++..
T Consensus 18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999887643
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.27 E-value=33 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 005076 502 KLSAEVQTLQQEASAARASLQELSSTKSNIQQNI 535 (715)
Q Consensus 502 el~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~I 535 (715)
+|...+++|++++..-..++..+.+..+.+++-+
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555555555554333
No 4
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=40.62 E-value=27 Score=28.85 Aligned_cols=57 Identities=32% Similarity=0.393 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhh---hcCChHHHHHHHHHHHHhchHHHhhhhcccccc
Q 005076 623 EVAMARFQRLRIVAGAATAERSAAL---ELGDLEEANLLLAEAEAAGQEAKKLEEANLKEE 680 (715)
Q Consensus 623 E~Ama~~qrLrL~a~aArAEr~aA~---E~~D~EEa~lL~aEAeAAe~eA~~Lk~y~~~~e 680 (715)
|.-+.+|+ +.+-+|.||.-...|+ ..||.++|+-++++|...=.+|-+.++-=++.|
T Consensus 5 e~e~~~f~-iI~~aG~Ars~~~eAl~~ak~gdfe~A~~~l~eA~e~l~~AH~~qt~liq~E 64 (104)
T d2e2aa_ 5 EMTLLGFE-IVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLARE 64 (104)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 7788999998776665 579999999999999999999999999444443
No 5
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=35.26 E-value=63 Score=24.10 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=47.4
Q ss_pred hhhHHHHHhhhhhhHHHHHHH----HHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 005076 356 DLREKEILYKKKDILTNELQK----LLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (715)
Q Consensus 356 DkrEKeiL~KkkdvL~~ELe~----LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (715)
|...-+.|.++-+.|.+|+.. +-.++..-+.=|..+...-..|++++..|-.+|.+.+..+..+-..|+.++
T Consensus 28 d~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le~s~ 103 (104)
T d1cuna2 28 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103 (104)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555555555555543 334445555557777777788888888888888888888877777777664
No 6
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=34.45 E-value=96 Score=25.78 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhccCcchh--------------hhhhHHH
Q 005076 495 KLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLE--------------AEKKVAA 560 (715)
Q Consensus 495 ~L~k~EEel~~dvQ~lrQevS~AR~SLQElSS~ks~IQQ~IasfKQki~Fidkr~peLE--------------AEKkvAa 560 (715)
+-.+-|.++..+|..+|..+..+ .+.+ .+..++..+...-.+|...=-+.|+|- -|.++++
T Consensus 35 ~y~~~Ek~~l~~v~~~R~~~~~a-~~~~----~~~~~~~~l~~al~~l~~~~E~yP~Lka~~~~~~l~~~l~~~E~~Ia~ 109 (149)
T d2etda1 35 GYAAHEKEILEEIANARAKLIGA-KTPQ----ESAQADAELSSALSRLLAIAENYPNLKADANFRQLMDELAGTENRIAV 109 (149)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHC-CSHH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccc-cchH----HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 45567888888877777766544 2233 346788888888899999999999994 4777777
Q ss_pred HHHchHHHHH
Q 005076 561 AARNFKEAAR 570 (715)
Q Consensus 561 aaRnFKEAaR 570 (715)
+-|.|-.+.+
T Consensus 110 aR~~YN~~V~ 119 (149)
T d2etda1 110 ARRDYNEAVK 119 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777754
No 7
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.75 E-value=51 Score=24.72 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 005076 377 LLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (715)
Q Consensus 377 LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (715)
++..-+.-+.+|.....+|..|...-...+...+.....|-.+++.|+...
T Consensus 40 ~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 90 (110)
T d1u5pa1 40 LLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRF 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 333333344444444445555554444444444444444444444444433
No 8
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=32.19 E-value=62 Score=23.75 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 005076 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432 (715)
Q Consensus 374 Le~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~l 432 (715)
++.|+.--+.-+.+|...-.+|..|......++..-|.....|..+++.|+..-.++..
T Consensus 33 ~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~ 91 (101)
T d1u5pa2 33 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555566666666665555555555666666666666555543
No 9
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=28.61 E-value=12 Score=30.26 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhhchHHHHHH
Q 005076 217 SQLEKQLDEACEAEDFEAAQRI 238 (715)
Q Consensus 217 ~~LE~eLEeACEaEDFe~Aeri 238 (715)
-++|++..+|.|.||||.--.+
T Consensus 4 ~EiErkIDeaIE~EDyE~L~~L 25 (78)
T d2fzta1 4 DEIERKIDEAIEKEDYETLLSL 25 (78)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 4799999999999999975443
No 10
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.52 E-value=91 Score=23.15 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhh
Q 005076 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLE 433 (715)
Q Consensus 372 ~ELe~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~le 433 (715)
..++.|+...+.-+.+|.....++..|...-..++..-|.....|..+++.|+.....+...
T Consensus 30 ~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~ 91 (104)
T d1cuna2 30 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKA 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888889999999999999999998888888888877788888888888777666543
No 11
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.03 E-value=1.1e+02 Score=22.59 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHH
Q 005076 377 LLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIIS 428 (715)
Q Consensus 377 LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~ls 428 (715)
|+..-+.-+.+|.....+|..+...-..++..-|.....|..+++.|+..-.
T Consensus 38 l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~ 89 (105)
T d1s35a2 38 GIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHR 89 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence 3333334444555555555556555555555555555555555555544433
No 12
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=23.01 E-value=97 Score=22.78 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=21.7
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHH
Q 005076 382 RDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIIS 428 (715)
Q Consensus 382 r~KE~EIAeNd~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~ls 428 (715)
...+.+|..+..+|..|...-...+...|...-.|..+++.|+..-.
T Consensus 46 ~~~~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~ 92 (107)
T d2spca_ 46 EDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555554444433344444444444333
No 13
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.67 E-value=1.4e+02 Score=21.92 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhh-hhhhhchhhHHHHHHhh
Q 005076 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQ-SSINAKYDSLQSIISQL 430 (715)
Q Consensus 374 Le~LL~lVr~KE~EIAeNd~~I~aV~erIs~VVS~F~e~Q-ssId~k~~~Lqs~lsq~ 430 (715)
++.++..-+.-+.+|..+..+|..|...-..++...+..+ ..|.-+++.|+..-..+
T Consensus 34 ~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L 91 (106)
T d1s35a1 34 AEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDAL 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3333433334444455555555555555555554433322 23444555555444443
Done!