Query 005078
Match_columns 715
No_of_seqs 375 out of 2377
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 3E-85 1E-89 726.0 44.0 408 290-698 13-426 (427)
2 2wme_A BADH, betaine aldehyde 100.0 1E-83 3.4E-88 722.6 40.9 400 268-696 27-485 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 9.9E-84 3.4E-88 717.3 38.9 408 290-698 25-443 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 3.3E-81 1.1E-85 699.7 41.3 422 290-713 13-463 (468)
5 2h5g_A Delta 1-pyrroline-5-car 100.0 1.2E-80 4E-85 694.4 43.4 440 266-713 10-457 (463)
6 3ek1_A Aldehyde dehydrogenase; 100.0 1.6E-80 5.6E-85 699.5 42.2 399 268-695 53-503 (504)
7 3ifg_A Succinate-semialdehyde 100.0 5.2E-80 1.8E-84 693.4 41.6 397 268-693 33-483 (484)
8 3ros_A NAD-dependent aldehyde 100.0 5.8E-80 2E-84 692.4 40.1 397 269-695 10-459 (484)
9 3prl_A NADP-dependent glyceral 100.0 1.1E-79 3.8E-84 693.6 41.6 401 268-695 32-484 (505)
10 3rh9_A Succinate-semialdehyde 100.0 3.6E-80 1.2E-84 697.1 37.2 412 268-709 32-502 (506)
11 3r31_A BADH, betaine aldehyde 100.0 1.2E-79 4E-84 694.6 40.9 398 268-698 35-492 (517)
12 4f3x_A Putative aldehyde dehyd 100.0 1.5E-79 5.3E-84 691.3 40.8 399 268-694 45-497 (498)
13 1a4s_A ALDH, betaine aldehyde 100.0 5.3E-79 1.8E-83 688.4 43.7 398 268-696 41-498 (503)
14 3ed6_A Betaine aldehyde dehydr 100.0 2.1E-79 7.2E-84 693.0 38.9 400 267-695 52-511 (520)
15 3u4j_A NAD-dependent aldehyde 100.0 5.2E-79 1.8E-83 691.0 40.7 402 268-698 43-502 (528)
16 4e4g_A Methylmalonate-semialde 100.0 2.5E-79 8.5E-84 692.6 37.8 401 268-695 47-506 (521)
17 3k2w_A Betaine-aldehyde dehydr 100.0 4.9E-79 1.7E-83 688.2 39.5 399 268-695 33-489 (497)
18 3pqa_A Lactaldehyde dehydrogen 100.0 4E-79 1.4E-83 686.0 38.5 414 268-709 17-482 (486)
19 1o04_A Aldehyde dehydrogenase, 100.0 1.3E-78 4.3E-83 684.2 40.8 397 269-694 41-495 (500)
20 3iwj_A Putative aminoaldehyde 100.0 1.3E-78 4.4E-83 685.8 39.7 401 268-695 28-490 (503)
21 2o2p_A Formyltetrahydrofolate 100.0 7.6E-79 2.6E-83 688.0 37.8 400 268-693 57-516 (517)
22 1wnd_A Putative betaine aldehy 100.0 2.2E-78 7.7E-83 681.4 41.4 398 268-693 43-494 (495)
23 3jz4_A Succinate-semialdehyde 100.0 3.1E-78 1E-82 680.2 42.2 397 268-693 30-480 (481)
24 3qan_A 1-pyrroline-5-carboxyla 100.0 2.1E-78 7.1E-83 687.5 40.8 401 267-696 55-518 (538)
25 1bxs_A Aldehyde dehydrogenase; 100.0 1.9E-78 6.6E-83 682.9 39.4 398 268-694 41-496 (501)
26 3b4w_A Aldehyde dehydrogenase; 100.0 1.9E-78 6.4E-83 682.6 39.2 397 268-694 29-482 (495)
27 3lns_A Benzaldehyde dehydrogen 100.0 4.4E-78 1.5E-82 674.7 41.3 404 265-693 8-456 (457)
28 2d4e_A 5-carboxymethyl-2-hydro 100.0 4.5E-78 1.5E-82 682.7 40.1 399 267-694 46-505 (515)
29 2imp_A Lactaldehyde dehydrogen 100.0 1.8E-77 6.1E-82 673.6 43.4 397 268-693 27-478 (479)
30 2w8n_A Succinate-semialdehyde 100.0 1.5E-77 5.2E-82 674.5 42.6 397 268-693 31-485 (487)
31 1uxt_A Glyceraldehyde-3-phosph 100.0 8.7E-78 3E-82 678.1 40.5 399 268-694 37-492 (501)
32 2j6l_A Aldehyde dehydrogenase 100.0 1.7E-77 5.7E-82 676.2 42.1 401 268-693 42-498 (500)
33 2ve5_A BADH, betaine aldehyde 100.0 2.1E-77 7.1E-82 675.3 41.0 400 268-696 27-485 (490)
34 3i44_A Aldehyde dehydrogenase; 100.0 8.1E-78 2.8E-82 677.2 36.9 395 267-692 45-496 (497)
35 1euh_A NADP dependent non phos 100.0 2.5E-77 8.6E-82 671.7 40.3 396 268-693 23-473 (475)
36 3sza_A Aldehyde dehydrogenase, 100.0 3.9E-77 1.3E-81 667.6 41.3 386 290-695 17-449 (469)
37 1uzb_A 1-pyrroline-5-carboxyla 100.0 5.7E-77 1.9E-81 674.4 42.5 400 267-693 55-515 (516)
38 4h7n_A Aldehyde dehydrogenase; 100.0 1.7E-77 5.7E-82 673.0 37.6 398 268-695 11-464 (474)
39 3etf_A Putative succinate-semi 100.0 3E-77 1E-81 669.8 39.1 395 269-693 13-460 (462)
40 3r64_A NAD dependent benzaldeh 100.0 3.9E-77 1.3E-81 674.5 39.9 402 268-698 33-489 (508)
41 4dng_A Uncharacterized aldehyd 100.0 3.6E-77 1.2E-81 672.6 39.0 399 268-695 27-479 (485)
42 1t90_A MMSDH, probable methylm 100.0 1.7E-76 5.9E-81 666.2 37.2 399 268-694 26-480 (486)
43 3ty7_A Putative aldehyde dehyd 100.0 4.3E-76 1.5E-80 662.7 34.2 391 268-692 28-475 (478)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 1E-75 3.5E-80 663.7 35.5 405 269-692 13-481 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 9.3E-76 3.2E-80 666.8 34.4 403 267-691 44-515 (528)
46 3ju8_A Succinylglutamic semial 100.0 5.7E-74 1.9E-78 646.4 39.8 392 269-696 26-473 (490)
47 4e3x_A Delta-1-pyrroline-5-car 100.0 4.4E-73 1.5E-77 645.1 39.5 399 268-694 82-551 (563)
48 4f9i_A Proline dehydrogenase/d 100.0 1.3E-72 4.4E-77 674.2 45.1 429 240-696 514-1012(1026)
49 2y53_A Aldehyde dehydrogenase 100.0 1.5E-71 5E-76 633.1 38.1 396 268-694 27-519 (534)
50 3haz_A Proline dehydrogenase; 100.0 2.1E-71 7.3E-76 662.3 39.2 384 290-695 549-988 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 3.8E-69 1.3E-73 603.6 36.9 385 290-698 11-453 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 7.1E-67 2.4E-71 583.3 34.5 383 290-695 6-450 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 1.8E-38 6.2E-43 342.4 22.6 255 11-283 1-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 1.2E-36 4.2E-41 313.9 21.4 244 15-280 2-250 (251)
55 3d40_A FOMA protein; fosfomyci 100.0 1.6E-33 5.6E-38 295.0 16.6 255 7-283 15-283 (286)
56 3ll9_A Isopentenyl phosphate k 100.0 3E-33 1E-37 290.5 18.2 254 14-281 2-266 (269)
57 2ap9_A NAG kinase, acetylgluta 100.0 1.2E-32 4.2E-37 290.9 21.9 243 14-283 25-291 (299)
58 2rd5_A Acetylglutamate kinase- 100.0 1.2E-32 4E-37 290.7 19.9 244 14-281 36-297 (298)
59 2e9y_A Carbamate kinase; trans 100.0 2E-32 6.9E-37 290.8 21.3 255 11-282 1-315 (316)
60 2v5h_A Acetylglutamate kinase; 100.0 7.4E-32 2.5E-36 286.7 20.9 246 14-283 49-311 (321)
61 3l86_A Acetylglutamate kinase; 100.0 2.1E-31 7.3E-36 276.0 23.8 222 7-263 30-271 (279)
62 3ll5_A Gamma-glutamyl kinase r 100.0 4.6E-32 1.6E-36 278.6 16.8 240 13-280 2-248 (249)
63 3nwy_A Uridylate kinase; allos 100.0 1.4E-31 4.8E-36 277.3 18.9 238 5-281 41-280 (281)
64 2buf_A Acetylglutamate kinase; 100.0 1.2E-30 4E-35 275.6 23.3 243 14-283 26-297 (300)
65 2bty_A Acetylglutamate kinase; 100.0 4.3E-31 1.5E-35 276.9 19.1 242 14-283 21-280 (282)
66 4axs_A Carbamate kinase; oxido 100.0 5.6E-31 1.9E-35 278.1 19.3 261 7-282 17-332 (332)
67 3k4o_A Isopentenyl phosphate k 100.0 1.3E-30 4.4E-35 269.9 21.5 245 14-283 6-265 (266)
68 1e19_A Carbamate kinase-like c 100.0 1.3E-30 4.4E-35 276.5 21.6 252 13-281 1-313 (314)
69 2egx_A Putative acetylglutamat 100.0 1.2E-30 4.2E-35 271.4 20.6 235 16-280 1-268 (269)
70 2va1_A Uridylate kinase; UMPK, 100.0 1.8E-30 6.2E-35 268.0 21.5 232 10-281 20-255 (256)
71 2we5_A Carbamate kinase 1; arg 100.0 1.4E-30 4.7E-35 276.3 20.6 253 13-281 1-309 (310)
72 2j4j_A Uridylate kinase; trans 100.0 1.4E-30 4.7E-35 264.4 18.5 220 15-282 1-225 (226)
73 1ybd_A Uridylate kinase; alpha 100.0 9.9E-30 3.4E-34 260.3 22.8 230 13-281 6-238 (239)
74 4a7w_A Uridylate kinase; trans 100.0 9.8E-30 3.4E-34 259.6 22.2 230 14-280 7-239 (240)
75 3kzf_A Carbamate kinase; argin 100.0 1.2E-29 3.9E-34 263.1 22.9 258 11-282 2-316 (317)
76 2ogx_B Molybdenum storage prot 100.0 5.9E-30 2E-34 266.2 20.3 231 15-282 37-269 (270)
77 1z9d_A Uridylate kinase, UK, U 100.0 1.5E-29 5.1E-34 260.7 21.9 230 14-283 7-241 (252)
78 3ek6_A Uridylate kinase; UMPK 100.0 1.4E-29 4.6E-34 258.9 20.5 231 13-282 8-241 (243)
79 2a1f_A Uridylate kinase; PYRH, 100.0 1.9E-29 6.6E-34 259.3 21.0 231 14-283 8-241 (247)
80 1gs5_A Acetylglutamate kinase; 100.0 7.2E-30 2.5E-34 264.2 17.5 240 14-281 2-257 (258)
81 2brx_A Uridylate kinase; UMP k 100.0 6.5E-30 2.2E-34 262.0 14.6 226 9-281 14-243 (244)
82 3zzh_A Acetylglutamate kinase; 100.0 2E-29 6.7E-34 264.2 15.6 235 15-283 49-302 (307)
83 3d2m_A Putative acetylglutamat 100.0 1.9E-28 6.4E-33 274.4 23.7 254 14-299 43-323 (456)
84 2ogx_A Molybdenum storage prot 100.0 9.8E-29 3.3E-33 257.5 19.6 224 16-283 41-272 (276)
85 2jjx_A Uridylate kinase, UMP k 100.0 5.9E-28 2E-32 249.2 23.8 236 10-283 8-247 (255)
86 2ij9_A Uridylate kinase; struc 100.0 3.1E-28 1.1E-32 245.9 17.6 213 15-280 1-218 (219)
87 3s6g_A N-acetylglutamate kinas 100.0 1.8E-28 6.2E-33 270.1 15.1 237 15-283 59-311 (460)
88 3ab4_A Aspartokinase; aspartat 99.9 1.8E-27 6E-32 262.9 18.9 232 14-283 1-244 (421)
89 4ab7_A Protein Arg5,6, mitocho 99.9 6.2E-28 2.1E-32 265.1 15.0 235 15-283 49-302 (464)
90 3s6k_A Acetylglutamate kinase; 99.9 4E-28 1.4E-32 267.5 6.0 239 15-283 62-314 (467)
91 3l76_A Aspartokinase; alloster 99.9 2.5E-26 8.4E-31 263.1 16.8 232 14-283 1-245 (600)
92 3c1m_A Probable aspartokinase; 99.9 7.2E-24 2.5E-28 236.9 18.7 238 15-283 1-301 (473)
93 2cdq_A Aspartokinase; aspartat 99.9 9.1E-23 3.1E-27 228.3 22.2 240 13-283 25-324 (510)
94 2j0w_A Lysine-sensitive aspart 99.9 2.8E-23 9.6E-28 229.9 15.6 236 14-283 2-292 (449)
95 3tvi_A Aspartokinase; structur 99.9 4.9E-23 1.7E-27 226.8 14.5 234 15-283 3-279 (446)
96 4gic_A HDH, histidinol dehydro 97.1 0.2 6.9E-06 53.5 25.7 283 363-692 93-401 (423)
97 1kae_A HDH, histidinol dehydro 95.9 2.4 8.1E-05 45.4 25.3 284 363-692 87-394 (434)
98 3pdw_A Uncharacterized hydrola 32.2 39 0.0013 33.0 4.6 44 12-61 4-47 (266)
99 3fgh_A Transcription factor A, 31.8 84 0.0029 23.7 5.5 36 298-333 28-63 (67)
100 3fzq_A Putative hydrolase; YP_ 31.1 52 0.0018 32.0 5.4 46 11-61 2-47 (274)
101 2b30_A Pvivax hypothetical pro 30.7 55 0.0019 33.0 5.5 51 7-61 18-70 (301)
102 3qgm_A P-nitrophenyl phosphata 30.7 40 0.0014 32.9 4.4 44 12-61 6-49 (268)
103 3r4c_A Hydrolase, haloacid deh 29.4 60 0.002 31.6 5.4 44 13-60 11-54 (268)
104 1rkq_A Hypothetical protein YI 28.6 66 0.0023 31.9 5.6 43 14-61 5-47 (282)
105 2fiu_A Conserved hypothetical 27.5 70 0.0024 26.7 4.7 69 541-620 2-76 (99)
106 2obb_A Hypothetical protein; s 27.0 30 0.001 31.2 2.3 47 14-61 3-49 (142)
107 2eqz_A High mobility group pro 24.7 1.2E+02 0.0041 24.2 5.5 36 298-333 47-82 (86)
108 3rag_A Uncharacterized protein 24.6 2.6E+02 0.009 27.3 8.8 78 243-327 28-131 (242)
109 2p9j_A Hypothetical protein AQ 23.8 91 0.0031 27.6 5.2 61 7-67 2-67 (162)
110 3ewi_A N-acylneuraminate cytid 23.3 86 0.003 28.7 4.9 49 193-262 11-61 (168)
111 3f9r_A Phosphomannomutase; try 22.6 88 0.003 30.4 5.1 43 14-61 4-46 (246)
112 1k1e_A Deoxy-D-mannose-octulos 22.1 57 0.002 29.8 3.5 57 8-68 2-67 (180)
113 1l6r_A Hypothetical protein TA 21.8 74 0.0025 30.5 4.3 45 13-62 4-48 (227)
114 1hry_A Human SRY; DNA, DNA-bin 20.8 1.4E+02 0.0047 23.1 5.0 31 300-330 36-66 (76)
115 1v63_A Nucleolar transcription 20.6 1.6E+02 0.0053 24.5 5.6 37 299-335 37-73 (101)
116 3pgv_A Haloacid dehalogenase-l 20.5 1.2E+02 0.0043 29.7 5.9 43 13-60 20-62 (285)
117 3dao_A Putative phosphatse; st 20.5 1.2E+02 0.004 29.9 5.6 46 12-61 19-64 (283)
118 1wr8_A Phosphoglycolate phosph 20.2 1.3E+02 0.0046 28.4 5.9 43 14-61 3-45 (231)
119 2ec4_A FAS-associated factor 1 20.2 21 0.00072 33.5 -0.1 49 593-641 25-77 (178)
120 3v42_A Folliculin; tumor suppr 20.2 1.2E+02 0.0041 29.4 5.3 71 418-498 21-91 (226)
121 1ns5_A Hypothetical protein YB 20.2 79 0.0027 28.9 3.8 53 9-71 62-114 (155)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=3e-85 Score=726.01 Aligned_cols=408 Identities=35% Similarity=0.617 Sum_probs=372.0
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
-+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+++++++|+.++..+++.....|+..+++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~ 92 (427)
T 1o20_A 13 MDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIK 92 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999988777778777777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005078 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 449 (715)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~ 449 (715)
.+++|+++.++.+...+....+.+...+++++|+|||++|+||||++++++++|||++||+||+|||+.||+|+..++++
T Consensus 93 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~l 172 (427)
T 1o20_A 93 ACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSA 172 (427)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHHH
Confidence 99999976655554433211123455688999999999999998888899999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-c-chhhHhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHHH
Q 005078 450 ITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 526 (715)
Q Consensus 450 ~~~al~~a-lP~gvv~vv~~-~-~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~A 526 (715)
+.++|.++ ||+|++|+|+| + ++++++|..||+||+|+||||+++||.|++++.||+++|||||||+||++|||||.|
T Consensus 173 ~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~A 252 (427)
T 1o20_A 173 IREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKA 252 (427)
T ss_dssp HHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHH
T ss_pred HHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHHH
Confidence 99988889 99999999996 3 568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCcccccccc-C--CCCCCccccccCceEEEE
Q 005078 527 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTVE 603 (715)
Q Consensus 527 ~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-v--~~~~~~~eE~FGPVl~v~ 603 (715)
++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| | +++++++||+||||++|+
T Consensus 253 a~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v~ 331 (427)
T 1o20_A 253 VPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIK 331 (427)
T ss_dssp HHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEE
T ss_pred HHHHHHHhccCCCCCCCccEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEEE
Confidence 9999999999999999999999999999 79999999999999888777765445668 5 468899999999999999
Q ss_pred EeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCccccccccccccccccccccc
Q 005078 604 IVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEG 683 (715)
Q Consensus 604 ~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ 683 (715)
+|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+|+|+++++|++|+++
T Consensus 332 ~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~~ 411 (427)
T 1o20_A 332 VVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRE 411 (427)
T ss_dssp EESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGG
T ss_pred EECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999877777889999999999877767789999999
Q ss_pred ceEEEEEEEcCcccc
Q 005078 684 LLTTRWILRGNGHVV 698 (715)
Q Consensus 684 ft~~K~v~~~~~~~~ 698 (715)
||+.|+|+++.+++|
T Consensus 412 ~~~~k~v~~~~~~~~ 426 (427)
T 1o20_A 412 LTTYKFVVLGEYHVR 426 (427)
T ss_dssp GEEEEEEEECSSCCC
T ss_pred HhceEEEEECCCccC
Confidence 999999999998877
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=1e-83 Score=722.64 Aligned_cols=400 Identities=16% Similarity=0.187 Sum_probs=349.1
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.||.||+.++++..++ .+||++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++|+.
T Consensus 27 ~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (490)
T 2wme_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4578999999999988 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++. ..++...++.+++++++.+. .+...+. ..+...+++|+|+|||++|+|| ||. +++++++||
T Consensus 99 --~ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~A 166 (490)
T 2wme_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHHH
Confidence 1221 12577788888888866543 3443332 2456678899999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+||||.||+|+.++++++++ + +|+|++|+|+| +.++++.|..||+||+|+||||+++|+++++.+
T Consensus 167 LaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 9999999999999999999999999987 7 99999999996 678999999999999999999999999887643
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC------
Q 005078 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 571 (715)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 571 (715)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~~ 321 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHH-HHHHHHHHHHHHhCcCCCCccc
Confidence 49999999999999999999999999999999999987 999999999999999 7999999999987521
Q ss_pred ----------------------------eE-ecCccc------cccc--c-C-----CCCCCccccccCceEEEEEeCCH
Q 005078 572 ----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (715)
Q Consensus 572 ----------------------------~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 608 (715)
++ .|+.+. .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 401 (490)
T 2wme_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred cCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCCH
Confidence 22 233221 1233 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEE
Q 005078 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 688 (715)
Q Consensus 609 deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K 688 (715)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.|
T Consensus 402 deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~G----re~G~~gl~~ft~~K 477 (490)
T 2wme_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccC----chhHHHHHHHhhcee
Confidence 9999999999999999999999999999999999999999998777788999999999986 357999999999999
Q ss_pred EEEEcCcc
Q 005078 689 WILRGNGH 696 (715)
Q Consensus 689 ~v~~~~~~ 696 (715)
+|+++.+.
T Consensus 478 ~v~i~~g~ 485 (490)
T 2wme_A 478 SVQVELGD 485 (490)
T ss_dssp EEEEECSC
T ss_pred EEEEECCC
Confidence 99997763
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=9.9e-84 Score=717.34 Aligned_cols=408 Identities=36% Similarity=0.618 Sum_probs=352.4
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
.+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++++.|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999988777655566666777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005078 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 449 (715)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~ 449 (715)
.+++++++.++.+...+....+.+...+++++|+|||++|+||||++++++++|||++||+||+|||+.||+|+..++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999877766665443221223556788999999999999999977889999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-cc-hhhHhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHHH
Q 005078 450 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 526 (715)
Q Consensus 450 ~~~al~~a-lP~gvv~vv~~-~~-~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~A 526 (715)
+.++|.++ ||+|++|+|+| +. +++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||||.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98887789 99999999995 44 58999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCcccccccc-------C-CCCCCccccccCc
Q 005078 527 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 598 (715)
Q Consensus 527 ~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------v-~~~~~~~eE~FGP 598 (715)
++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|++....++. + +++++++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCcccCcCceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 9999999999988999999999999999 79999999999998775556554333321 1 4688999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccc
Q 005078 599 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 678 (715)
Q Consensus 599 Vl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~ 678 (715)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..||||+++||+|+++.+++|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCCh
Confidence 99999999999999999999999999999999999999999999999999998877788999999999998777678899
Q ss_pred cccccceEEEEEEEcCcccc
Q 005078 679 VGVEGLLTTRWILRGNGHVV 698 (715)
Q Consensus 679 ~gl~~ft~~K~v~~~~~~~~ 698 (715)
+|+++||+.|+|+++.+++|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred hHHHhhceEEEEEECCCccc
Confidence 99999999999999988876
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=3.3e-81 Score=699.75 Aligned_cols=422 Identities=43% Similarity=0.712 Sum_probs=330.7
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhc-ChhHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSLA 368 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~-~~~~i~~~~ 368 (715)
-..+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.++|+.++...++.. +..++++++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a 92 (468)
T 1vlu_A 13 MSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVML 92 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999988766666776567887 788999999
Q ss_pred HHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHH
Q 005078 369 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 448 (715)
Q Consensus 369 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~ 448 (715)
+.++.+....++.|...+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+|||+.||+|+..+++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ 172 (468)
T 1vlu_A 93 QGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAK 172 (468)
T ss_dssp HHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHH
Confidence 99999876555555543311112345678899999999999999997778999999999999999999999999999999
Q ss_pred HHHHhccc----c-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCH
Q 005078 449 VITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANL 523 (715)
Q Consensus 449 ~~~~al~~----a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl 523 (715)
+++++|.+ + ||+|++|+|+++++++++|..||+||+|+||||+++||.|++++.||+++|||||||+||++|||+
T Consensus 173 l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl 252 (468)
T 1vlu_A 173 IVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADL 252 (468)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCH
T ss_pred HHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCH
Confidence 99988888 9 999999999933468899999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCccccc---------------ccc--C-
Q 005078 524 DVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK---------------LLQ--I- 585 (715)
Q Consensus 524 ~~A~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~---------------~~p--v- 585 (715)
|.|++.+++++|.|+|+|+|++|+|||+++ | +|+++|+++++++++.+.|++.... +.| +
T Consensus 253 ~~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv 330 (468)
T 1vlu_A 253 IKAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVD 330 (468)
T ss_dssp HHHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC-
T ss_pred HHHHHHHHHHhcCCCCcCCcCcEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceee
Confidence 999999999999998899999999999999 7 9999999999998765445542111 224 2
Q ss_pred -CCCCCccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcc
Q 005078 586 -PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGA 664 (715)
Q Consensus 586 -~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~ 664 (715)
+++++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+|||+|+
T Consensus 331 ~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~Gg 410 (468)
T 1vlu_A 331 ADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGA 410 (468)
T ss_dssp ------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC--------
T ss_pred CCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999987777788999777
Q ss_pred cccccccccccccccccccceEEEEEEEcCccccc--C--CCCceeeeccccC
Q 005078 665 EVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--G--DQGVVYTHKNLAL 713 (715)
Q Consensus 665 ~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~~~~~--~--~~~~~~~~~~~~~ 713 (715)
++|++.|+.+..|++|+++|++.|+|+++.+++|+ + .....|+|+.+++
T Consensus 411 ~~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~~ 463 (468)
T 1vlu_A 411 EVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDI 463 (468)
T ss_dssp --------------CCSGGGEEEEEEEECSSCCSCCC----------------
T ss_pred CcceecCCCCCCcchHHHHhcceEEEEECCCCcCccccccccccceecCCCCc
Confidence 77777655444499999999999999999999883 2 2358999998764
No 5
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.2e-80 Score=694.39 Aligned_cols=440 Identities=47% Similarity=0.759 Sum_probs=348.7
Q ss_pred hHHHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 266 SIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 266 ~l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
...+|.+|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++.++
T Consensus 10 ~~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~ 83 (463)
T 2h5g_A 10 GVDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE 83 (463)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc
Confidence 357899999999999888 78999999999999999999999999999999999999999999999999886443
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccc-ccccccccccccCCCeEEEEeeeceeEEEEEcCCChhhHHHHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLA 424 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~A 424 (715)
.|....+.+++..+..|+..+++.++++++.. +..|...+......+...+++++|+|||++|+||+|....++++||
T Consensus 84 -~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~A 162 (463)
T 2h5g_A 84 -GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALA 162 (463)
T ss_dssp -TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHHH
T ss_pred -ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHHH
Confidence 22112222333344568999999999988543 4445543211111345678899999999999999885444899999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC-C
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-I 503 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~-~ 503 (715)
|++||+||+|||+.||+|+..++++++++|.++-|+|+||+|+|+.++++.|..||+||+|+||||+.+||.|++.|+ |
T Consensus 163 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~ 242 (463)
T 2h5g_A 163 IASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGI 242 (463)
T ss_dssp HHHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSS
T ss_pred HHcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCC
Confidence 999999999999999999999999999854321179999999976667888899999999999999999999999886 9
Q ss_pred CEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCcccc--c
Q 005078 504 PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRAS--K 581 (715)
Q Consensus 504 ~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~--~ 581 (715)
|+++|||||||+||++|||||.|++.+++++|.|+|+|+|++|||||++|||+.+.+++++.+.+.|++++++.... +
T Consensus 243 pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~~rvlV~~~i~d~p~~~~~i~~~~~~Ga~v~~G~~~~~~g 322 (463)
T 2h5g_A 243 PVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYL 322 (463)
T ss_dssp CBCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSEEEEEEEGGGTTSHHHHHHHHHHHHTTCEEEECHHHHC--
T ss_pred CEEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccCcEEEEeccccchHHHHHHHHHHHhCCCEEEeCCcccccC
Confidence 99999999999999999999999999999999995599999999999999932588888888888888877654321 2
Q ss_pred cccC-CCCCCccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCcc
Q 005078 582 LLQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARF 660 (715)
Q Consensus 582 ~~pv-~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pf 660 (715)
++ + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||
T Consensus 323 ~~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~Pf 401 (463)
T 2h5g_A 323 TF-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRF 401 (463)
T ss_dssp --------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTT
T ss_pred cc-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCCCCCC
Confidence 11 3 468999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred CCcccccccccccccccccccccceEEEEEEEcCccccc--C-CCCceeeeccccC
Q 005078 661 GLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--G-DQGVVYTHKNLAL 713 (715)
Q Consensus 661 G~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~~~~~--~-~~~~~~~~~~~~~ 713 (715)
||+++||+|++++|.+|++|+++||+.|+|+++.+++|+ + .....|+|+.+++
T Consensus 402 GG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~~~ 457 (463)
T 2h5g_A 402 GLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 457 (463)
T ss_dssp TSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEECCC
T ss_pred CCCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccCcc
Confidence 999999997656556799999999999999999999984 2 2346899987754
No 6
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=1.6e-80 Score=699.54 Aligned_cols=399 Identities=18% Similarity=0.188 Sum_probs=349.5
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 124 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPL-- 124 (504)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5688999999998888 89999999999999999999999999999999999999999999999987765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.+++++.+.+.. +...+. . ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 125 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 192 (504)
T 3ek1_A 125 --AEA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA-P-QNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPA 192 (504)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc-c-cccccceeeccCceEEEEECCCcchHHHHHHHHHHH
Confidence 122 236778888888888665432 333221 1 2356778999999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 502 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.++
T Consensus 193 LaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 268 (504)
T 3ek1_A 193 LAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA 268 (504)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhh
Confidence 9999999999999999999999999987 8 99999999995 6678888999999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC-------
Q 005078 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 571 (715)
||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.+
T Consensus 269 ~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 347 (504)
T 3ek1_A 269 PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEPG 347 (504)
T ss_dssp GGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHH-HHHHHHHHHHHhhcccCCCcccc
Confidence 9999999999999999999999999999999999987 999999999999999 7999999999987521
Q ss_pred ---------------------------eE-ecCccccccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005078 572 ---------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 615 (715)
Q Consensus 572 ---------------------------~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 615 (715)
++ .|+.+..++| | | +++++++||+||||++|++|+|+||||+++
T Consensus 348 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 427 (504)
T 3ek1_A 348 VVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQA 427 (504)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHHH
Confidence 12 1332212333 5 2 468999999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 616 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 616 N~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.|+|+++.+
T Consensus 428 N~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~v~~~~g 503 (504)
T 3ek1_A 428 NDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLG----REGSKYGIEEYLETKYICSAYK 503 (504)
T ss_dssp HCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSTTTSGGGGEEEEEEEEECC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCC----CCCcHHHHHHhhceEEEEEecC
Confidence 999999999999999999999999999999999998777788999999999986 4579999999999999998765
No 7
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=5.2e-80 Score=693.45 Aligned_cols=397 Identities=15% Similarity=0.158 Sum_probs=348.2
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (484)
T 3ifg_A 33 FDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPL-- 104 (484)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 4578899999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.+++++...+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 105 --~~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 172 (484)
T 3ifg_A 105 --AEA--------KGEIAYAASFIEWFAEEGKRVAGDTLPTP--DANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPA 172 (484)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--STTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHhhcCcccccc--CCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHH
Confidence 122 24788888999988865543 34333211 1356778999999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++++
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa 248 (484)
T 3ifg_A 173 LAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA 248 (484)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTG
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999996 567888899999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC-------
Q 005078 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 502 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 571 (715)
.||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 327 (484)
T 3ifg_A 249 PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTESG 327 (484)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred ccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999987 999999999999999 7999999999987631
Q ss_pred ---------------------------eE-ecCccc--cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 572 ---------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 572 ---------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
++ .|+.+. .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 328 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (484)
T 3ifg_A 328 ATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVR 407 (484)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHHH
Confidence 12 233321 2333 5 3 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.|+|+++
T Consensus 408 ~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~~~~~k~v~~~ 483 (484)
T 3ifg_A 408 LANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLG----REGSHYGIDDYVVIKYLCVA 483 (484)
T ss_dssp HHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEEC----CBSTTTTTGGGEEEEEEEEE
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCC----CCchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999998777788999999999986 35799999999999999874
No 8
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=5.8e-80 Score=692.43 Aligned_cols=397 Identities=17% Similarity=0.158 Sum_probs=340.2
Q ss_pred HHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Q 005078 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (715)
Q Consensus 269 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 348 (715)
+|.||+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 10 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 80 (484)
T 3ros_A 10 NPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLL--- 80 (484)
T ss_dssp ETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH---
Confidence 478899999988888 89999999999999999999999999999999999999999999999988876542
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHHHH
Q 005078 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLAIR 426 (715)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~ALa 426 (715)
.++. .++..+...++++++.++.+. +...+. ..+...+++++|+|||++|+|| || .+++++++|||+
T Consensus 81 -~ea~-~ev~~~~~~~~~~a~~~~~~~------~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALa 149 (484)
T 3ros_A 81 -SESK-EEVELCVSICNYYADHGPEML------KPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNFI 149 (484)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHHHHHHT------SCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHHH
T ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHhc------CCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHHHH
Confidence 2332 223333334444444444432 222111 1245678899999999999998 67 467899999999
Q ss_pred hCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC--
Q 005078 427 SGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-- 502 (715)
Q Consensus 427 aGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~-- 502 (715)
+||+||+|||+.||+|+..+++++.+ + ||+|++|+|+| ++++++ |..||+||+|+||||+++||.|++.|+
T Consensus 150 aGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa~~ 224 (484)
T 3ros_A 150 VGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGKN 224 (484)
T ss_dssp HTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHhcc
Confidence 99999999999999999999999987 7 99999999996 566788 788999999999999999999998873
Q ss_pred -CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC----------
Q 005078 503 -IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---------- 570 (715)
Q Consensus 503 -~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---------- 570 (715)
||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 225 lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~~ 303 (484)
T 3ros_A 225 LKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEADTT 303 (484)
T ss_dssp TCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTCC
T ss_pred CCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCCCc
Confidence 9999999999999999999999999999999999987 999999999999999 799999999998752
Q ss_pred ------------------------CeE-ecCcc--ccccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005078 571 ------------------------VGL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 615 (715)
Q Consensus 571 ------------------------~~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 615 (715)
+++ .|+.. ..++| | | ++|++++||+||||++|++|+|+||||+++
T Consensus 304 ~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 383 (484)
T 3ros_A 304 LPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLA 383 (484)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHHH
Confidence 222 23322 12333 5 2 368999999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 616 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 616 N~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++..
T Consensus 384 N~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~v~~~~~ 459 (484)
T 3ros_A 384 NDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYG----RELSGLGLMAFVNEHLVIDVTK 459 (484)
T ss_dssp HSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTCEEEEEEECGG
T ss_pred hCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCC----cCchHHHHHHhheeEEEEECCC
Confidence 999999999999999999999999999999999998877889999999999986 4679999999999999998643
No 9
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=1.1e-79 Score=693.57 Aligned_cols=401 Identities=21% Similarity=0.235 Sum_probs=345.0
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (505)
T 3prl_A 32 SAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK- 104 (505)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4588999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCC---CeEEEEeeeceeEEEEEcCC-Ch-hhHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RP-DALVQIA 421 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~---~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~ 421 (715)
++. .|+..+++.++++++..+ ..+...+....+. +...+++|+|+|||++|+|| || .+.++++
T Consensus 105 ---ea~--------~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 173 (505)
T 3prl_A 105 ---SAI--------GEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKI 173 (505)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHH
Confidence 221 256666666776664432 2233322111111 45678899999999999998 57 4678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+..|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 174 a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 174 APALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6778888999999999999999999999999
Q ss_pred hcC-CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 500 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 500 ~a~-~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
.|+ ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 328 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA-DQLVANIKELVEQLTVGSPEDD 328 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTTT
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHH-HHHHHHHHHHHHhcccCCCCCc
Confidence 886 9999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred --------------------------CeE-ecCccccccc-c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHHH
Q 005078 571 --------------------------VGL-FGGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIH 616 (715)
Q Consensus 571 --------------------------~~~-~g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN 616 (715)
+++ .|+.....++ | | ++|++++||+||||++|++|+|+||||+++|
T Consensus 329 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~aN 408 (505)
T 3prl_A 329 ADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSN 408 (505)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHH
T ss_pred CcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHHh
Confidence 122 1332211123 5 2 3689999999999999999999999999999
Q ss_pred hcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCC-CCCCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 617 QHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 617 ~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~-~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||.|+||+| +++|++|+++||+.|+|+++.+
T Consensus 409 ~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~G----r~~g~~~~~~f~~~k~v~~~~~ 484 (505)
T 3prl_A 409 QSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLG----VQGIKPSLLSMTRERVTVLNLA 484 (505)
T ss_dssp TSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEEEC-
T ss_pred CCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCC----cCccHHHHHHhhceEEEEEeCC
Confidence 9999999999999999999999999999999999875 4578999999999986 3579999999999999988754
No 10
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=3.6e-80 Score=697.11 Aligned_cols=412 Identities=16% Similarity=0.163 Sum_probs=346.7
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 32 ~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 103 (506)
T 3rh9_A 32 YNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPW-- 103 (506)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4578999999999888 89999999999999999999999999999999999999999999999988876542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEee-eceeEEEEEcCC-Ch-hhHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RP-DALVQIASL 423 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~-~PlGVV~~I~p~-~P-~~~~~~~~~ 423 (715)
.++. .|+..+++.++++++..+.. +...+. ..+...++++ +|+|||++|+|| || .+++++++|
T Consensus 104 --~ea~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 170 (506)
T 3rh9_A 104 --KEAQ--------GEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA 170 (506)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHHH
Confidence 1221 35777777778777654332 332221 1245567888 999999999998 57 467899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005078 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (715)
Q Consensus 424 ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 501 (715)
||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++|
T Consensus 171 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 171 ALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999986 8 99999999996 667888888899999999999999999999888
Q ss_pred C---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 502 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 502 ~---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
+ ||+++|||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 325 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMND 325 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHH-HHHHHHHHHHHHhccCCCCccc
Confidence 3 9999999999999999999999999999999999987 999999999999999 799999999998752
Q ss_pred ---------------------------CeE-ecCccc---cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHH
Q 005078 571 ---------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 611 (715)
Q Consensus 571 ---------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deA 611 (715)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+|||
T Consensus 326 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 405 (506)
T 3rh9_A 326 GIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEV 405 (506)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHHH
Confidence 222 244321 2333 5 2 36899999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEE
Q 005078 612 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 691 (715)
Q Consensus 612 i~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~ 691 (715)
|+++|+++|||++||||+|.+++++|++++++|+|+||+++.+.+.+||||+++||+| +++|++|+++||+.|+|+
T Consensus 406 i~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v~ 481 (506)
T 3rh9_A 406 IDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTVP 481 (506)
T ss_dssp HHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEEE
T ss_pred HHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCC----cCccHHHHHHhcceEEEE
Confidence 9999999999999999999999999999999999999998888888999999999986 467999999999999999
Q ss_pred EcCcccc---cCCCCceeeec
Q 005078 692 RGNGHVV---DGDQGVVYTHK 709 (715)
Q Consensus 692 ~~~~~~~---~~~~~~~~~~~ 709 (715)
++.++.- ++-----|.|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~ 502 (506)
T 3rh9_A 482 RGFAENLYFQSHHHHHHWSHP 502 (506)
T ss_dssp EC-------------------
T ss_pred EcCccceeecccccccccCcc
Confidence 9876532 33333345553
No 11
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.2e-79 Score=694.64 Aligned_cols=398 Identities=14% Similarity=0.144 Sum_probs=344.2
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 35 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 106 (517)
T 3r31_A 35 IFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPI-- 106 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578999999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-----ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-----IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 420 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 420 (715)
.++ |+..+++.++++++..+. .++..+. ..+. .+++++|+|||++|+|| ||. +++++
T Consensus 107 --~ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~ 170 (517)
T 3r31_A 107 --QET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACWK 170 (517)
T ss_dssp --HHH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHHH
T ss_pred --HHH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHHH
Confidence 121 444555555555543322 2333221 2345 78999999999999998 684 67899
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 421 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 421 ~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
++|||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+|+.++++.|..||+||+|+||||+++||.|++
T Consensus 171 ~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 171 AAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999987 8 999999999986678888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-----
Q 005078 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (715)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 570 (715)
.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 325 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDPL 325 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCTT
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHH-HHHHHHHHHHHHhccCCCCC
Confidence 87 49999999999999999999999999999999999997 999999999999999 799999999998752
Q ss_pred -----------------------------CeE-ecCc-c----ccccc--c-C-----CCCCCccccccCceEEEEEeCC
Q 005078 571 -----------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (715)
Q Consensus 571 -----------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 607 (715)
+++ .|+. . ..+++ | | ++|++++||+||||++|++|+|
T Consensus 326 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 405 (517)
T 3r31_A 326 DYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDD 405 (517)
T ss_dssp STTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEECC
T ss_pred CcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeCC
Confidence 222 2441 0 12333 5 3 4689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEE
Q 005078 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 687 (715)
Q Consensus 608 ~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~ 687 (715)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.
T Consensus 406 ~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~ 481 (517)
T 3r31_A 406 EDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFG----RENSAAALEHYSEL 481 (517)
T ss_dssp HHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEEC----CBSTGGGGGGSEEE
T ss_pred HHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhce
Confidence 99999999999999999999999999999999999999999998877889999999999986 45799999999999
Q ss_pred EEEEEcCcccc
Q 005078 688 RWILRGNGHVV 698 (715)
Q Consensus 688 K~v~~~~~~~~ 698 (715)
|+|+++.++.+
T Consensus 482 K~v~~~~~~~~ 492 (517)
T 3r31_A 482 KTVYVSTGKVD 492 (517)
T ss_dssp EEEEECCC---
T ss_pred EEEEEcCCCCC
Confidence 99999877654
No 12
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=1.5e-79 Score=691.30 Aligned_cols=399 Identities=14% Similarity=0.135 Sum_probs=347.9
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 45 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 116 (498)
T 4f3x_A 45 LNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI-- 116 (498)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4688999999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++. ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 117 --~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (498)
T 4f3x_A 117 --NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPA 185 (498)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHHH
Confidence 1221 13677788888888765543 23332211 2356778999999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+|+..+++++.+ +||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++|
T Consensus 186 LaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 261 (498)
T 4f3x_A 186 IGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAAK 261 (498)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 499999999996 667888899999999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC---------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 570 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 570 (715)
.||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~~ 340 (498)
T 4f3x_A 262 TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTEN 340 (498)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGGC
T ss_pred hCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHH-HHHHHHHHHHHHhcccCCCccccC
Confidence 39999999999999999999999999999999999987 999999999999999 799999999987642
Q ss_pred -------------------------C-eEe-cCccc--cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 571 -------------------------V-GLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 571 -------------------------~-~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
+ ++. |+... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 420 (498)
T 4f3x_A 341 EIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVA 420 (498)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHHH
Confidence 2 332 33221 2333 5 2 3688999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.|+|+++
T Consensus 421 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~t~~k~v~~~ 496 (498)
T 4f3x_A 421 WANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYG----KDMSVYALEDYTAVRHIMIN 496 (498)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEEC----CBSHHHHHHHTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcC----ccchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999998877789999999999986 46799999999999999886
Q ss_pred C
Q 005078 694 N 694 (715)
Q Consensus 694 ~ 694 (715)
.
T Consensus 497 ~ 497 (498)
T 4f3x_A 497 H 497 (498)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=5.3e-79 Score=688.36 Aligned_cols=398 Identities=15% Similarity=0.156 Sum_probs=348.8
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 112 (503)
T 1a4s_A 41 FEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI-- 112 (503)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578899999998888 89999999999999999999999999999999999999999999999987765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.++++++..+. .++..+.. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 113 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 179 (503)
T 1a4s_A 113 --TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPA 179 (503)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHHH
Confidence 122 23677888888888765543 34333211 234568899999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| + ++++.|..||+||+|+||||+.+||.|++.|
T Consensus 180 LaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 254 (503)
T 1a4s_A 180 LACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA 254 (503)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999999999999999987 8 99999999996 6 7888899999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC--------
Q 005078 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (715)
Q Consensus 502 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 570 (715)
.||+++|||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 255 ~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 333 (503)
T 1a4s_A 255 KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLTE 333 (503)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHH-HHHHHHHHHHHHhcCCCCCcccC
Confidence 59999999999999999999999999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------CeE-ecCccc--------ccc-c-c-C-----CCCCCccccccCceEEEEEeCC
Q 005078 571 --------------------------VGL-FGGPRA--------SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (715)
Q Consensus 571 --------------------------~~~-~g~~~~--------~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~ 607 (715)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|
T Consensus 334 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 413 (503)
T 1a4s_A 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDT 413 (503)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECC
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecCC
Confidence 222 244322 243 3 5 3 3688999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEE
Q 005078 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 687 (715)
Q Consensus 608 ~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~ 687 (715)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.
T Consensus 414 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~ 489 (503)
T 1a4s_A 414 EEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFG----RENGQATVDYYSQL 489 (503)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSTTGGGGGSEEE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998777788999999999986 46799999999999
Q ss_pred EEEEEcCcc
Q 005078 688 RWILRGNGH 696 (715)
Q Consensus 688 K~v~~~~~~ 696 (715)
|+|+++.++
T Consensus 490 k~v~~~~~~ 498 (503)
T 1a4s_A 490 KTVIVEMGD 498 (503)
T ss_dssp EEEEECCSC
T ss_pred eEEEEccCC
Confidence 999997765
No 14
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=2.1e-79 Score=693.00 Aligned_cols=400 Identities=17% Similarity=0.208 Sum_probs=350.5
Q ss_pred HHHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005078 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (715)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 344 (715)
+.+|.+|+.++++..++ .+|+++|+++|++|| +.|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 125 (520)
T 3ed6_A 52 IINPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT 125 (520)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 35688999999998888 899999999999999 8999999999999999999999999999999998776543
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHH
Q 005078 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (715)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 421 (715)
. .++ ..|+..+++.++++++..+.. +...+. . ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 126 ~----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 191 (520)
T 3ed6_A 126 L----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDS-P-IPDTESKIVKEPVGVVTQITPWNYPLLQASWKI 191 (520)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeccc-C-CCCCcccccccCccEEEEECCCccHHHHHHHHH
Confidence 2 122 236788888899888765443 333321 1 1356778999999999999998 685 577999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++
T Consensus 192 apALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 192 APALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 8 99999999996 6778999999999999999999999999998
Q ss_pred hcC---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-----
Q 005078 500 STK---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (715)
Q Consensus 500 ~a~---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 570 (715)
.|+ ||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~ 346 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGF 346 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTT
T ss_pred HhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHH-HHHHHHHHHHHHhccCCCCc
Confidence 873 9999999999999999999999999999999999987 999999999999999 799999999987752
Q ss_pred -----------------------------CeE-ecCccc------cccc--c-C-----CCCCCccccccCceEEEEEeC
Q 005078 571 -----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 606 (715)
Q Consensus 571 -----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 606 (715)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+
T Consensus 347 d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 426 (520)
T 3ed6_A 347 DADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFE 426 (520)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeC
Confidence 122 244321 2333 5 2 368999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceE
Q 005078 607 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 686 (715)
Q Consensus 607 ~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~ 686 (715)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.|+||+| +++|++|+++||+
T Consensus 427 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----re~G~~gl~~~t~ 502 (520)
T 3ed6_A 427 TEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIG----RELGKEGLEEYLV 502 (520)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEE
T ss_pred CHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCC----ccchHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998777788999999999996 3579999999999
Q ss_pred EEEEEEcCc
Q 005078 687 TRWILRGNG 695 (715)
Q Consensus 687 ~K~v~~~~~ 695 (715)
.|+|+++.+
T Consensus 503 ~k~v~~~~~ 511 (520)
T 3ed6_A 503 SKHILTNTN 511 (520)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEcCC
Confidence 999998765
No 15
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.2e-79 Score=691.00 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=348.6
Q ss_pred HHHHc-CCcceeEEecCCcccccHhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005078 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (715)
Q Consensus 268 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 344 (715)
.+|.+ |+.++++..++ .+|+++|+++|++|| +.|+.++.++|.++|++++++|++|+++|++++++|++++
T Consensus 43 ~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 116 (528)
T 3u4j_A 43 VSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP 116 (528)
T ss_dssp ECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34788 99999999888 899999999999999 7899999999999999999999999999999998877543
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHH
Q 005078 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (715)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 421 (715)
. .++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. ++++++
T Consensus 117 ~----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 182 (528)
T 3u4j_A 117 I----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERV 182 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHH
Confidence 2 222 23566677777776654432 23332211 1356678999999999999998 684 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 183 PWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-----
Q 005078 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (715)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 570 (715)
.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|||||+++| |+|+++|+++++++.
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 337 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDPL 337 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECTT
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHH-HHHHHHHHHHHHhhcCCCCC
Confidence 77 39999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred -----------------------------CeE-ecCccc---cccc--c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 571 -----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 571 -----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 338 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 417 (528)
T 3u4j_A 338 NERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTAD 417 (528)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHH
Confidence 222 233321 2333 5 2 368999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 689 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~ 689 (715)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 418 eAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~ 493 (528)
T 3u4j_A 418 EAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLG----RELGRYGFDEYSQFKG 493 (528)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSTTHHHHHTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhceEE
Confidence 999999999999999999999999999999999999999998877889999999999986 3569999999999999
Q ss_pred EEEcCcccc
Q 005078 690 ILRGNGHVV 698 (715)
Q Consensus 690 v~~~~~~~~ 698 (715)
|+++.++.+
T Consensus 494 v~~~~~~~~ 502 (528)
T 3u4j_A 494 VHVTLGRPA 502 (528)
T ss_dssp EEEESSCCC
T ss_pred EEEeCCCCC
Confidence 999877444
No 16
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.5e-79 Score=692.60 Aligned_cols=401 Identities=15% Similarity=0.167 Sum_probs=346.4
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+.++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 119 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID- 119 (521)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578899999998888 899999999999999999999999999999999999999999999999887765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
++ ..|+..+++.++++++..+.. +...+. ...+...+++++|+|||++|+|| ||. +++++++||
T Consensus 120 ---ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 186 (521)
T 4e4g_A 120 ---DA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPA 186 (521)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHH
Confidence 22 236778888888887654332 322211 12355678899999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+|+.+.++.|..||+||+|+||||+++||.|++.|
T Consensus 187 LaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa~ 262 (521)
T 4e4g_A 187 IACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAM 262 (521)
T ss_dssp HHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 8 99999999997555567788899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCc-ccCchhHHHHHHHHHhcCC-------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~~~~~~~~~------- 571 (715)
.||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|+++++++.+
T Consensus 263 ~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~~ 341 (521)
T 4e4g_A 263 NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDEK 341 (521)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCTT
T ss_pred cCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCcc
Confidence 49999999999999999999999999999999999976 9999999999999 99 7999999999887521
Q ss_pred ---------------------------eE-ecCcc------ccccc--c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 572 ---------------------------GL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 572 ---------------------------~~-~g~~~------~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
++ .|+.+ ..++| | | ++|++++||+||||++|++|+|+|
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 421 (521)
T 4e4g_A 342 ADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYE 421 (521)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCHH
Confidence 22 24422 12333 5 2 368899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCC-CCCccCCcccccccccccccccccccccceEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC-DGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 688 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~-~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K 688 (715)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++... +.+||||.+.||+| +.+++|++|+++||+.|
T Consensus 422 eAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~G~~gl~~ft~~K 499 (521)
T 4e4g_A 422 EALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFG--DLNQHGTDSIKFWTRTK 499 (521)
T ss_dssp HHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEES--SCCBSHHHHHHHTEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCC--CCccchHHHHHHhheEE
Confidence 9999999999999999999999999999999999999999986553 67899999999986 33467999999999999
Q ss_pred EEEEcCc
Q 005078 689 WILRGNG 695 (715)
Q Consensus 689 ~v~~~~~ 695 (715)
+|+++..
T Consensus 500 ~v~~~~~ 506 (521)
T 4e4g_A 500 TITSRWP 506 (521)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998754
No 17
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=4.9e-79 Score=688.22 Aligned_cols=399 Identities=15% Similarity=0.184 Sum_probs=348.5
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 33 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 104 (497)
T 3k2w_A 33 LSPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLL-- 104 (497)
T ss_dssp ECSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578899999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 105 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 172 (497)
T 3k2w_A 105 --SVA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPA 172 (497)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHH
Confidence 122 13677788888888765543 33333211 2456778899999999999998 684 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 502 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.++
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa 248 (497)
T 3k2w_A 173 LITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSA 248 (497)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhh
Confidence 9999999999999999999999999987 8 99999999996 6678888889999999999999999999998884
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC-------
Q 005078 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 571 (715)
||+++|||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~~ 327 (497)
T 3k2w_A 249 EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDAD 327 (497)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999987 999999999999999 7999999999987632
Q ss_pred ---------------------------eE-ecCcc--c----cccc--c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 572 ---------------------------GL-FGGPR--A----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 572 ---------------------------~~-~g~~~--~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
++ .|+.+ . .++| | | ++|++++||+||||++|++|+|+|
T Consensus 328 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 407 (497)
T 3k2w_A 328 SQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSME 407 (497)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHH
T ss_pred CccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCHH
Confidence 12 24431 1 2333 5 2 368899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 689 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~ 689 (715)
|||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||||.|+||+| +++|++|+++||+.|+
T Consensus 408 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~k~ 483 (497)
T 3k2w_A 408 QAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG----GEDGKFGLEQYLEKKT 483 (497)
T ss_dssp HHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCC----ccchHHHHHHhcceEE
Confidence 999999999999999999999999999999999999999998888888999999999986 3579999999999999
Q ss_pred EEEcCc
Q 005078 690 ILRGNG 695 (715)
Q Consensus 690 v~~~~~ 695 (715)
|+++..
T Consensus 484 v~~~~~ 489 (497)
T 3k2w_A 484 VYINEA 489 (497)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998754
No 18
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=4e-79 Score=685.99 Aligned_cols=414 Identities=18% Similarity=0.213 Sum_probs=345.4
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 17 ~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 89 (486)
T 3pqa_A 17 INPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIK- 89 (486)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578899999998888 899999999999999999999999999999999999999999999999887765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
++. .|+..+++.++++++..+ ..+...+. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 90 ---ea~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 154 (486)
T 3pqa_A 90 ---QAR--------VEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPA 154 (486)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHHH
Confidence 221 245566666666654332 22332221 245678999999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+|||+.||+|+..++++++++++++ ||+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.|
T Consensus 155 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa 234 (486)
T 3pqa_A 155 IATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG 234 (486)
T ss_dssp HHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCC
T ss_pred HHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcC
Confidence 999999999999999999999999999998888 99999999996 667788888999999999999999999999887
Q ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC---------
Q 005078 502 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV--------- 571 (715)
Q Consensus 502 ~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~--------- 571 (715)
.||++||||||||+||++|||||.|++.+++|+|.|+| .|+|++|||||+++| |+|+++|+++++++.+
T Consensus 235 ~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~~ 313 (486)
T 3pqa_A 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKTD 313 (486)
T ss_dssp SSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTCS
T ss_pred CCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCCC
Confidence 69999999999999999999999999999999999987 999999999999999 7999999999886532
Q ss_pred -------------------------eE-ecCccccccc-c-C----CCCCCccccccCceEEEEEeCCHHHHHHHHHhcC
Q 005078 572 -------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG 619 (715)
Q Consensus 572 -------------------------~~-~g~~~~~~~~-p-v----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~ 619 (715)
++ .|+.+...++ | | ++|++++||+||||++|++|+| ||||+++|+++
T Consensus 314 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~~ 392 (486)
T 3pqa_A 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTE 392 (486)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcCC
Confidence 11 2332211122 5 2 4689999999999999999999 99999999999
Q ss_pred CCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEEEcCcc-c
Q 005078 620 SAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH-V 697 (715)
Q Consensus 620 ~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~~-~ 697 (715)
|||++||||+|.++++++++++++|+|+||+++.+ .+.+||||.|+||+| +++|++|+++||+.|+|+++.+. +
T Consensus 393 ~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~f~~~k~v~~~~~~~~ 468 (486)
T 3pqa_A 393 YGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLG----REGVKYAMEEMSNIKTIIISKAENL 468 (486)
T ss_dssp CCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEES----CBSHHHHHHHTEEEEEEEEEC----
T ss_pred CCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCC----CCCcHHHHHHhhceEEEEEcCCccC
Confidence 99999999999999999999999999999998653 358999999999986 46799999999999999987543 3
Q ss_pred c--cCCCCceeeec
Q 005078 698 V--DGDQGVVYTHK 709 (715)
Q Consensus 698 ~--~~~~~~~~~~~ 709 (715)
+ +++----|.|.
T Consensus 469 ~~~~~~~~~~~~~~ 482 (486)
T 3pqa_A 469 YFQSHHHHHHWSHP 482 (486)
T ss_dssp --------------
T ss_pred CCCCCCccccccCc
Confidence 3 34444456554
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=1.3e-78 Score=684.18 Aligned_cols=397 Identities=14% Similarity=0.144 Sum_probs=344.5
Q ss_pred HHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 269 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
+|.||+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 114 (500)
T 1o04_A 41 NPSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPY 114 (500)
T ss_dssp ETTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 478899999999888 8999999999999999 9999999999999999999999999999999988775442
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 422 (715)
.++. ..|+..+++.++++++..+ ..+...+. ..+...+++++|+|||++|+|| ||. +++++++
T Consensus 115 ----~ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 180 (500)
T 1o04_A 115 ----VISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLG 180 (500)
T ss_dssp ----HHHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHHH
Confidence 1221 1256677777777765443 23433221 2345678899999999999999 584 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhh
Q 005078 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (715)
Q Consensus 423 ~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 500 (715)
|||++||+||+|||+.||+|+..+++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.
T Consensus 181 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~ 256 (500)
T 1o04_A 181 PALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVA 256 (500)
T ss_dssp HHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHh
Confidence 999999999999999999999999999987 7 99999999996 66788888899999999999999999999877
Q ss_pred cC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-----
Q 005078 501 TK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (715)
Q Consensus 501 a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 570 (715)
|+ ||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 257 aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 335 (500)
T 1o04_A 257 AGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY-DEFVERSVARAKSRVVGNPF 335 (500)
T ss_dssp HHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBCCTT
T ss_pred hhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHH-HHHHHHHHHHHHhCcCCCcc
Confidence 64 9999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred -----------------------------CeEe-cCccc--cccc--c-C-----CCCCCccccccCceEEEEEeCCHHH
Q 005078 571 -----------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (715)
Q Consensus 571 -----------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~de 610 (715)
+++. |+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 336 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 415 (500)
T 1o04_A 336 DSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEE 415 (500)
T ss_dssp STTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred cccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHHH
Confidence 2222 44322 2333 5 3 3578999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEE
Q 005078 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 690 (715)
Q Consensus 611 Ai~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v 690 (715)
||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|.||+| +++|++|+++|++.|+|
T Consensus 416 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~f~~~K~v 491 (500)
T 1o04_A 416 VVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSG----RELGEYGLQAYTEVKTV 491 (500)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEES----CBSTGGGGGGGEEEEEE
T ss_pred HHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcceEEE
Confidence 99999999999999999999999999999999999999998766778999999999985 45799999999999999
Q ss_pred EEcC
Q 005078 691 LRGN 694 (715)
Q Consensus 691 ~~~~ 694 (715)
+++.
T Consensus 492 ~~~~ 495 (500)
T 1o04_A 492 TVKV 495 (500)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8864
No 20
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=1.3e-78 Score=685.83 Aligned_cols=401 Identities=17% Similarity=0.177 Sum_probs=343.1
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVA 342 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~ 342 (715)
.+|.||+.++++..++ .+|+++|+++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++
T Consensus 28 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 101 (503)
T 3iwj_A 28 INPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCG 101 (503)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578899999998888 8999999999999999 9999999999999999999999999999999988876
Q ss_pred HHHhhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccc-cccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHH
Q 005078 343 AAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALV 418 (715)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~ 418 (715)
++. .++. .|+..+++.++++++..+. .+... +......+...+++++|+|||++|+|| ||. +.+
T Consensus 102 k~~----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 169 (503)
T 3iwj_A 102 KPL----DEAA--------WDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMAT 169 (503)
T ss_dssp CCH----HHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHH
T ss_pred CCH----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHH
Confidence 542 1221 2455556666665543321 12211 100011345678999999999999998 685 677
Q ss_pred HHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHH
Q 005078 419 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 496 (715)
Q Consensus 419 ~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~ 496 (715)
++++|||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.
T Consensus 170 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 170 WKVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 9999999999999999999999999999999987 7 99999999996 5678888999999999999999999999
Q ss_pred HHhhc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC--
Q 005078 497 IKEST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-- 570 (715)
Q Consensus 497 i~~~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-- 570 (715)
|++.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|||||+++| |+|+++|+++++++.
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g 324 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA-TEFLNRIVKWIKNIKIS 324 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBS
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHH-HHHHHHHHHHHHhccCC
Confidence 99887 38999999999999999999999999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------------CeE-ecCccc----cccc--c-C-----CCCCCccccccCceEEEEEe
Q 005078 571 --------------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 605 (715)
Q Consensus 571 --------------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 605 (715)
+++ .|+.+. .++| | | ++|++++||+||||++|++|
T Consensus 325 ~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 404 (503)
T 3iwj_A 325 DPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTF 404 (503)
T ss_dssp CTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEe
Confidence 122 233321 2333 5 2 36889999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccce
Q 005078 606 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 685 (715)
Q Consensus 606 ~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft 685 (715)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|.+|+++||
T Consensus 405 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~g~~~f~ 480 (503)
T 3iwj_A 405 STEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFG----RELGEWGLDNYL 480 (503)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCC----CcchHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998777788999999999986 356999999999
Q ss_pred EEEEEEEcCc
Q 005078 686 TTRWILRGNG 695 (715)
Q Consensus 686 ~~K~v~~~~~ 695 (715)
+.|+|++..+
T Consensus 481 ~~k~v~~~~~ 490 (503)
T 3iwj_A 481 SVKQVTQYIS 490 (503)
T ss_dssp EEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999998654
No 21
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=7.6e-79 Score=688.01 Aligned_cols=400 Identities=15% Similarity=0.180 Sum_probs=345.0
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 57 ~nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 130 (517)
T 2o2p_A 57 INPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVY 130 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH
Confidence 4578999999999988 8999999999999999 9999999999999999999999999999999987765432
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-cccccccc-ccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRT-ELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 421 (715)
.++. ..|+..+++.++++++..+. .+...+.. ....+...+++|+|+|||++|+|| ||. +.++++
T Consensus 131 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 199 (517)
T 2o2p_A 131 ----TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKT 199 (517)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHH
Confidence 1221 03567778888887765433 34332211 002233568899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 200 a~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~ 275 (517)
T 2o2p_A 200 AACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMK 275 (517)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 8 99999999996 5677888889999999999999999999987
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC----
Q 005078 500 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 570 (715)
Q Consensus 500 ~a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 570 (715)
.|. ||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 276 ~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~vGdp 354 (517)
T 2o2p_A 276 SCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH-NQFVQKVVEEVEKMKIGNP 354 (517)
T ss_dssp HHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCBSCT
T ss_pred HhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 664 9999999999999999999999999999999999986 999999999999999 799999999887652
Q ss_pred ------------------------------CeE-ecCccc--cccc--c-C-----CCCCCccccccCceEEEEEeCC--
Q 005078 571 ------------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD-- 607 (715)
Q Consensus 571 ------------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~-- 607 (715)
+++ .|+... .++| | | ++|++++||+||||++|++|+|
T Consensus 355 ~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 434 (517)
T 2o2p_A 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434 (517)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTTC
T ss_pred CCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCCC
Confidence 122 233321 2333 5 2 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEE
Q 005078 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 687 (715)
Q Consensus 608 ~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~ 687 (715)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.
T Consensus 435 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~~~~ 510 (517)
T 2o2p_A 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFG----KDLGEAALNEYLRI 510 (517)
T ss_dssp SHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEEC----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcC----ccChHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998766778999999999986 35799999999999
Q ss_pred EEEEEc
Q 005078 688 RWILRG 693 (715)
Q Consensus 688 K~v~~~ 693 (715)
|+|+++
T Consensus 511 k~v~~~ 516 (517)
T 2o2p_A 511 KTVTFE 516 (517)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 999874
No 22
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=2.2e-78 Score=681.36 Aligned_cols=398 Identities=15% Similarity=0.153 Sum_probs=344.8
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 43 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 114 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPL-- 114 (495)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5688899999998888 89999999999999999999999999999999999999999999999988775542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~A 424 (715)
.++.. .|+..+++.++++++..+ ..++..+.. . .+...+++++|+|||++|+|| || .+++++++||
T Consensus 115 --~ea~~-------~Ev~~~~~~~~~~a~~~~~~~g~~~~~~-~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 183 (495)
T 1wnd_A 115 --HSAFN-------DEIPAIVDVFRFFAGAARCLNGLAAGEY-L-EGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPA 183 (495)
T ss_dssp --HHHHH-------THHHHHHHHHHHHHHHTTCCEEECBEEE-E-TTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHHHHhcCccccCC-C-CCceeEEeeecCCeEEEECCCcchHHHHHHHHHHH
Confidence 12211 156677777777775443 234433221 1 244668899999999999999 58 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+|+..+++++.+ +||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.|
T Consensus 184 LaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa~ 259 (495)
T 1wnd_A 184 LAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259 (495)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGG
T ss_pred HHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 667788888899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhc----------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 569 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~---------- 569 (715)
.||+++|||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 260 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 338 (495)
T 1wnd_A 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDEST 338 (495)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTTC
T ss_pred cCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhH-HHHHHHHHHHHHhccCCCCccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 79999999988765
Q ss_pred ------------------------C-CeEe-cCc-cc-cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 570 ------------------------G-VGLF-GGP-RA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 570 ------------------------~-~~~~-g~~-~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
| +++. |+. .. .+++ | | ++|++++||+||||++|++|+|+||||+
T Consensus 339 ~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 418 (495)
T 1wnd_A 339 ELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVN 418 (495)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHHH
Confidence 3 3443 443 21 2333 5 3 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|.||+| +++|++|+++||+.|+|+++
T Consensus 419 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~f~~~k~v~~~ 494 (495)
T 1wnd_A 419 WANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYG----KDMSLYGLEDYTVVRHVMVK 494 (495)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCC----ccchHHHHHHhhCeEEEEec
Confidence 99999999999999999999999999999999999997766788999999999986 35799999999999999864
No 23
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=3.1e-78 Score=680.18 Aligned_cols=397 Identities=17% Similarity=0.166 Sum_probs=347.6
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 30 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 102 (481)
T 3jz4_A 30 TNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLA- 102 (481)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 4578899999998888 899999999999999999999999999999999999999999999999877654421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
++ ..|+..+++.+++++.... ..+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 103 ---~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 169 (481)
T 3jz4_A 103 ---EA--------KGEISYAASFIEWFAEEGKRIYGDTIPGH--QADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPA 169 (481)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCcccccc--CCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHH
Confidence 22 2367888888888876542 334433211 2356778999999999999998 684 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 502 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+.+||.|++.++
T Consensus 170 LaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 170 LAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999996 6678888999999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC--------
Q 005078 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (715)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 570 (715)
||+++|||||||+||++|||||.|++.+++|+|.|+| .|+|++|||||+++| |+|+++|+++++++.
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 324 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDNG 324 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCccCc
Confidence 9999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred --------------------------CeE-ecCcc--cccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 571 --------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 571 --------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
+++ .|+.. ..++ + | | +++++++||+||||++|++|+|+||||+
T Consensus 325 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 404 (481)
T 3jz4_A 325 VTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIA 404 (481)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHHH
Confidence 222 23322 1223 3 5 2 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++
T Consensus 405 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~t~~k~v~~~ 480 (481)
T 3jz4_A 405 QANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG----REGSKYGIEDYLEIKYMCIG 480 (481)
T ss_dssp HHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCC----CCchHHHHHHhhceeEEEEe
Confidence 99999999999999999999999999999999999998877788999999999986 46799999999999999875
No 24
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=2.1e-78 Score=687.55 Aligned_cols=401 Identities=18% Similarity=0.204 Sum_probs=344.6
Q ss_pred HHHHHc-CCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 267 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 267 l~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
+.+|.+ |+.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 55 ~~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW 128 (538)
T ss_dssp EECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 467889 99999999888 89999999999999999999999999999999999999999999999887765432
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcc-cc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIA 421 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~ 421 (715)
.++. .|+..+++.++++++. .+ ..++..+. ..+...+++++|+|||++|+|| || .+.++++
T Consensus 129 ----~ea~--------~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 193 (538)
T 3qan_A 129 ----KEAD--------ADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTA 193 (538)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHH
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHH
Confidence 1222 2566666777766654 22 22333321 1356678999999999999998 58 4678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 194 a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 269 (538)
T 3qan_A 194 VAPIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYE 269 (538)
T ss_dssp HHHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888889999999999999999999998
Q ss_pred hc---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhc
Q 005078 500 ST---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE 569 (715)
Q Consensus 500 ~a---------~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~ 569 (715)
.| .||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 270 ~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~ 348 (538)
T 3qan_A 270 RAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVY-DEVLEKTVALAKNL 348 (538)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHTTC
T ss_pred HhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHH-HHHHHHHHHHHHhc
Confidence 76 58999999999999999999999999999999999987 999999999999999 79999999998765
Q ss_pred CC---------------------------------eE-ecCccc--cccc--c-C-----CCCCCccccccCceEEEEEe
Q 005078 570 GV---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 605 (715)
Q Consensus 570 ~~---------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 605 (715)
.+ ++ .|+... .++| | | ++|++++||+||||++|++|
T Consensus 349 ~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~ 428 (538)
T 3qan_A 349 TVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKA 428 (538)
T ss_dssp CBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEEe
Confidence 21 11 233221 2333 5 2 36899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEc-CCCCC-CCCCccCCccccccccccccccccccccc
Q 005078 606 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHN-ASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEG 683 (715)
Q Consensus 606 ~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN-~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ 683 (715)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+|| .++.. .+.+||||.++||+|. +++|++|+++
T Consensus 429 ~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~G~~gl~~ 505 (538)
T 3qan_A 429 NDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDS---KAGGPDYLAL 505 (538)
T ss_dssp SSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCC---CBTSTTTGGG
T ss_pred CCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCc---ccccHHHHHH
Confidence 99999999999999999999999999999999999999999999 55554 6789999999999862 3579999999
Q ss_pred ceEEEEEEEcCcc
Q 005078 684 LLTTRWILRGNGH 696 (715)
Q Consensus 684 ft~~K~v~~~~~~ 696 (715)
||+.|+|+++.++
T Consensus 506 ft~~k~v~~~~~~ 518 (538)
T 3qan_A 506 HMQAKTVSEMYAE 518 (538)
T ss_dssp GEEEEEEEEEC--
T ss_pred hhCeEEEEEecCC
Confidence 9999999987654
No 25
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=1.9e-78 Score=682.85 Aligned_cols=398 Identities=16% Similarity=0.153 Sum_probs=344.4
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 344 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++
T Consensus 41 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 114 (501)
T 1bxs_A 41 FNPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKL 114 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3578899999999888 8999999999999999 999999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHH
Q 005078 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 421 (715)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 421 (715)
. .++. ..|+..+++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. ++++++
T Consensus 115 ~----~e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 180 (501)
T 1bxs_A 115 F----SNAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKI 180 (501)
T ss_dssp H----HHHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHHH
Confidence 2 1221 1256667777777765443 23433221 2345678899999999999999 584 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
+|||++||+||+|||+.||+|+..+++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 181 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~ 256 (501)
T 1bxs_A 181 GPALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKE 256 (501)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 8 99999999996 6678888889999999999999999999987
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC----
Q 005078 500 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 570 (715)
Q Consensus 500 ~a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 570 (715)
.|+ ||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 257 ~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 335 (501)
T 1bxs_A 257 AAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY-DEFVRRSVERAKKYVLGNP 335 (501)
T ss_dssp HHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHH-HHHHHHHHHHHTCCCBSCT
T ss_pred HhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHH-HHHHHHHHHHHHhcCCCCC
Confidence 754 9999999999999999999999999999999999987 999999999999999 799999999887652
Q ss_pred ------------------------------CeEe-cCccc--cccc--c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 571 ------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 571 ------------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
+++. |+... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 336 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 415 (501)
T 1bxs_A 336 LTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLD 415 (501)
T ss_dssp TSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCHH
T ss_pred cccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCHH
Confidence 2222 33321 2333 5 3 357899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 689 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~ 689 (715)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|.||+| +++|++|+++|++.|+
T Consensus 416 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G----~~~G~~~l~~f~~~K~ 491 (501)
T 1bxs_A 416 DVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNG----RELGEYGFHEYTEVKT 491 (501)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcC----ccchHHHHHHhhCeeE
Confidence 999999999999999999999999999999999999999998766778999999999885 4579999999999999
Q ss_pred EEEcC
Q 005078 690 ILRGN 694 (715)
Q Consensus 690 v~~~~ 694 (715)
|+++.
T Consensus 492 v~~~~ 496 (501)
T 1bxs_A 492 VTIKI 496 (501)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 98864
No 26
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-78 Score=682.61 Aligned_cols=397 Identities=15% Similarity=0.138 Sum_probs=345.8
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 29 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 102 (495)
T 3b4w_A 29 RCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPP 102 (495)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4578899999999888 8999999999999999 8999999999999999999999999999999988775442
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 422 (715)
.++. ..|+..+++.++++++..+. .+...+. +.+...+++|+|+|||++|+|| ||. +++++++
T Consensus 103 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 168 (495)
T 3b4w_A 103 ----TIIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA 168 (495)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHHH
Confidence 1221 02567778888888765432 3433221 2344668899999999999998 684 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005078 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (715)
Q Consensus 423 ~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 501 (715)
|||++||+||+|||+.||+|+.++++++++ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|+++|
T Consensus 169 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 169 PALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999987 8 99999999998656788888999999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
.||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 323 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY-DEIVAAVTNFVTALPVGPPSDP 323 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTCT
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhcCCCCCccC
Confidence 59999999999999999999999999999999999987 999999999999999 799999999987752
Q ss_pred ---------------------------CeE-ecCccc----cccc--c-C-----CCCCCccccccCceEEEEEeCCHHH
Q 005078 571 ---------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (715)
Q Consensus 571 ---------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~de 610 (715)
+++ .|+... .+++ | | ++|++++||+||||++|++|+|+||
T Consensus 324 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 403 (495)
T 3b4w_A 324 AAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEED 403 (495)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHHH
Confidence 233 244331 2333 5 2 3688999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEE
Q 005078 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 690 (715)
Q Consensus 611 Ai~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v 690 (715)
||+++|+++|||++||||+|.++++++++++++|+|+||++. ..+.+||||.|.||+| +++|++|+++||+.|+|
T Consensus 404 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~~k~v 478 (495)
T 3b4w_A 404 AIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIG----RENGPEGVEHFTQQKSV 478 (495)
T ss_dssp HHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcC----ccchHHHHHHhcceeEE
Confidence 999999999999999999999999999999999999999987 6778999999999986 46799999999999999
Q ss_pred EEcC
Q 005078 691 LRGN 694 (715)
Q Consensus 691 ~~~~ 694 (715)
+++.
T Consensus 479 ~~~~ 482 (495)
T 3b4w_A 479 LLPM 482 (495)
T ss_dssp ECCT
T ss_pred EEcc
Confidence 8864
No 27
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=4.4e-78 Score=674.70 Aligned_cols=404 Identities=17% Similarity=0.150 Sum_probs=332.3
Q ss_pred chHHHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005078 265 DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 344 (715)
Q Consensus 265 ~~l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 344 (715)
+.+.++.+++.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++
T Consensus 8 ~~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 81 (457)
T 3lns_A 8 HHHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKP 81 (457)
T ss_dssp ---------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC
T ss_pred ccccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 4467788999999999888 8999999999999999999999999999999999999999999999999887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHH
Q 005078 345 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIAS 422 (715)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~ 422 (715)
. .++...++..+...++++++.++.|.+.. ...... ...+...+++++|+|||++|+|| || .+++++++
T Consensus 82 ~----~ea~~~ev~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 152 (457)
T 3lns_A 82 K----DVVDLAEIGAVLHEIDFALAHLDEWVAPV-SVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLI 152 (457)
T ss_dssp H----HHHHHHTHHHHHHHHHHHHHHHHHHTSCE-EECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHHH
Confidence 3 23433344445556677777776665311 111111 01234678899999999999998 57 46789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005078 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (715)
Q Consensus 423 ~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 502 (715)
|||++||+||+|||+.||+|+.++++++.+ +||+|++|+|+|+.++++.|.+ ++||+|+||||+++||.|++.|.
T Consensus 153 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa 227 (457)
T 3lns_A 153 GAIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAA 227 (457)
T ss_dssp HHHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999987 4999999999975566777776 68999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhc---------
Q 005078 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 569 (715)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~--------- 569 (715)
||+++|||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 228 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~gp 306 (457)
T 3lns_A 228 KHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVK-DALLERLVERVKTELPEINSTGK 306 (457)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTCC
T ss_pred hccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999987 999999999999999 79999999998775
Q ss_pred ------------------CCeEecCccc-cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHHHh-cCCC
Q 005078 570 ------------------GVGLFGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGSA 621 (715)
Q Consensus 570 ------------------~~~~~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~-~~~G 621 (715)
+.-+.|+... .+++ | | ++|++++||+||||++|++|+|+||||+++|+ ++||
T Consensus 307 li~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~g 386 (457)
T 3lns_A 307 LVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKP 386 (457)
T ss_dssp CSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCSC
T ss_pred CCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCCC
Confidence 2112355321 2333 5 2 36899999999999999999999999999999 9999
Q ss_pred ceeEEEecCHHHHHHHHHhcCcceEEEcCCCC--CCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 622 HTDCIVAEDQKVAETFLCQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 622 L~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~--~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
|++||||+|.+++++|++++++|+|+||++.. ..+.+||||.|+||+| +++|++|+++||+.|+|++.
T Consensus 387 L~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~~~ 456 (457)
T 3lns_A 387 LAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMG----EYHGHFSYLTFTHKKSVRIV 456 (457)
T ss_dssp SEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEEC----CBSHHHHHHHTEEEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCC----CCchHHHHHHhhCeeEEEeC
Confidence 99999999999999999999999999999753 3578999999999986 35799999999999999863
No 28
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=4.5e-78 Score=682.68 Aligned_cols=399 Identities=16% Similarity=0.166 Sum_probs=349.3
Q ss_pred HHHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005078 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (715)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 346 (715)
..+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 46 ~~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 118 (515)
T 2d4e_A 46 SLDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL- 118 (515)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 35688999999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHH
Q 005078 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASL 423 (715)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~ 423 (715)
.++. .|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| || .+++++++|
T Consensus 119 ---~ea~--------~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 185 (515)
T 2d4e_A 119 ---RIVR--------AQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAP 185 (515)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhH
Confidence 1221 3677888889988876543 34433211 2345678899999999999998 68 467899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005078 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (715)
Q Consensus 424 ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 501 (715)
||++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+||.|+++|
T Consensus 186 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~a 261 (515)
T 2d4e_A 186 ALAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNA 261 (515)
T ss_dssp HHHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 8 99999999996 567888888999999999999999999999887
Q ss_pred C---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 502 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 502 ~---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
. ||+++|||||||+||++|||||.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.
T Consensus 262 a~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 340 (515)
T 2d4e_A 262 ADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF-EDFVGKVVERARAIRVGHPLDP 340 (515)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTST
T ss_pred hhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHH-HHHHHHHHHHHhhcccCCcccc
Confidence 4 9999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred ---------------------------CeE-ecCccc----------cccc--c-C----CCCCCccccccCceEEEEEe
Q 005078 571 ---------------------------VGL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEIV 605 (715)
Q Consensus 571 ---------------------------~~~-~g~~~~----------~~~~--p-v----~~~~~~~eE~FGPVl~v~~~ 605 (715)
+++ .|+... .++| | | ++|++++||+||||++|++|
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~ 420 (515)
T 2d4e_A 341 ETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPF 420 (515)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEee
Confidence 122 244321 2333 5 3 35789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccce
Q 005078 606 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 685 (715)
Q Consensus 606 ~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft 685 (715)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|+
T Consensus 421 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~~ 496 (515)
T 2d4e_A 421 KDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDR----REGGTYALDFYT 496 (515)
T ss_dssp SSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCS----CBSHHHHHHHHE
T ss_pred CCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998777788999999999986 357999999999
Q ss_pred EEEEEEEcC
Q 005078 686 TTRWILRGN 694 (715)
Q Consensus 686 ~~K~v~~~~ 694 (715)
+.|+|+++.
T Consensus 497 ~~K~v~~~~ 505 (515)
T 2d4e_A 497 DLKTIALPL 505 (515)
T ss_dssp EEEEEEEES
T ss_pred ceeEEEEcC
Confidence 999998864
No 29
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=1.8e-77 Score=673.59 Aligned_cols=397 Identities=18% Similarity=0.194 Sum_probs=346.9
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQ-- 98 (479)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578999999999888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.++++++..+ ..+...+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 99 --~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 166 (479)
T 2imp_A 99 --QLA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAPA 166 (479)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHHH
Confidence 122 2468888899998886553 234432211 1345678899999999999998 684 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 502 (715)
|++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.|.
T Consensus 167 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa 242 (479)
T 2imp_A 167 LLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAA 242 (479)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 8 99999999996 5667888888999999999999999999998773
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC--------
Q 005078 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (715)
Q Consensus 503 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 570 (715)
||+++|||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 ~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 321 (479)
T 2imp_A 243 KNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAERN 321 (479)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTCS
T ss_pred ccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhH-HHHHHHHHHHHHhcccCCccccC
Confidence 9999999999999999999999999999999999987 999999999999999 799999999987642
Q ss_pred ---------------------------CeE-ecCccc--ccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHH
Q 005078 571 ---------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 612 (715)
Q Consensus 571 ---------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 612 (715)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 322 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eAi 401 (479)
T 2imp_A 322 DIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAI 401 (479)
T ss_dssp SCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHHH
Confidence 222 244321 233 3 5 2 368899999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEE
Q 005078 613 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 613 ~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|++|+++||+.|+|++
T Consensus 402 ~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~~l~~~~~~k~v~~ 477 (479)
T 2imp_A 402 SMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG----GADGKHGLHEYLQTQVVYL 477 (479)
T ss_dssp HHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEES----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCC----CCchHHHHHHhcCeeEEEe
Confidence 999999999999999999999999999999999999998776778999999999986 4579999999999999986
Q ss_pred c
Q 005078 693 G 693 (715)
Q Consensus 693 ~ 693 (715)
+
T Consensus 478 ~ 478 (479)
T 2imp_A 478 Q 478 (479)
T ss_dssp E
T ss_pred c
Confidence 4
No 30
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=1.5e-77 Score=674.51 Aligned_cols=397 Identities=16% Similarity=0.179 Sum_probs=346.0
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 31 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 102 (487)
T 2w8n_A 31 QDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL-- 102 (487)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578899999999888 88999999999999999999999999999999999999999999999988775542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++. .|+..+++.++++++..+ ..++..+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 103 --~ea~--------~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 170 (487)
T 2w8n_A 103 --KEAH--------GEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA 170 (487)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHHH
Confidence 1221 257777788888775443 234433211 1345678899999999999998 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEec---C-cchhhHhhcCCCCccEEEeecCHHHHHHHHh
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~---~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 499 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|++|+|+ | +.++++.|.+||+||+|+||||+.+||.|++
T Consensus 171 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 171 LAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999987 8 9999999999 7 5667888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHh-cC----
Q 005078 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQH-EG---- 570 (715)
Q Consensus 500 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~-~~---- 570 (715)
.| .||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|++++++ +.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~p 325 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH-DAFVKAFAEAMKKNLRVGNG 325 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHH-HHHHHHHHHHHHHHCCBSCT
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHH-HHHHHHHHHHHHhhcccCCc
Confidence 87 59999999999999999999999999999999999987 999999999999999 7999999999888 52
Q ss_pred ------------------------------CeEe-cCccc-cc--cc-c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 571 ------------------------------VGLF-GGPRA-SK--LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 571 ------------------------------~~~~-g~~~~-~~--~~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
+++. |+... .+ ++ | | ++|++++||+||||++|++|+|+|
T Consensus 326 ~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 405 (487)
T 2w8n_A 326 FEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEE 405 (487)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCHH
T ss_pred ccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCHH
Confidence 2222 44322 23 34 5 3 358999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 689 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~ 689 (715)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|.||+| +++|++|+++||+.|+
T Consensus 406 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G----~~~G~~~l~~f~~~k~ 481 (487)
T 2w8n_A 406 EAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG----REGSKYGIDEYLELKY 481 (487)
T ss_dssp HHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEES----CBSTTTGGGGGEEEEE
T ss_pred HHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcC----CCchHHHHHHhcCccE
Confidence 999999999999999999999999999999999999999998777778999999999885 4579999999999999
Q ss_pred EEEc
Q 005078 690 ILRG 693 (715)
Q Consensus 690 v~~~ 693 (715)
|+++
T Consensus 482 v~~~ 485 (487)
T 2w8n_A 482 VCYG 485 (487)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9874
No 31
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=8.7e-78 Score=678.13 Aligned_cols=399 Identities=15% Similarity=0.151 Sum_probs=346.8
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 346 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 37 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 109 (501)
T 1uxt_A 37 KSPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK- 109 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 4578899999999888 8999999999999999 9999999999999999999999999999999988765432
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCC--CeEEEEeeeceeEEEEEcCC-Ch-hhHHHHH
Q 005078 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELAD--GLILEKTSCPLGVLLIVFES-RP-DALVQIA 421 (715)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~--~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~ 421 (715)
.++ ..|+..+++.++++++..+. .++..+....+. +...+++++|+|||++|+|| || .++++++
T Consensus 110 ---~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 178 (501)
T 1uxt_A 110 ---SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKI 178 (501)
T ss_dssp ---HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHH
Confidence 122 13678888899988876543 244332110022 34678899999999999998 58 4678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhh
Q 005078 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (715)
Q Consensus 422 ~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 500 (715)
+|||++||+||+|||+.||+|+.++++++++ + ||+|++|+|+|..++++.|..||+||+|+||||+++||.|++.
T Consensus 179 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~ 254 (501)
T 1uxt_A 179 TYSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKV 254 (501)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHh
Confidence 9999999999999999999999999999987 8 9999999999633788889999999999999999999999988
Q ss_pred cC-CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC-------
Q 005078 501 TK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 501 a~-~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 571 (715)
|. ||+++|||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 255 aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 333 (501)
T 1uxt_A 255 GGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDPT 333 (501)
T ss_dssp HCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred cCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchH-HHHHHHHHHHHHhccCCCccccC
Confidence 85 9999999999999999999999999999999999987 999999999999999 7999999999886521
Q ss_pred ---------------------------eE-ecCccccc-c-c-c-C----C----CCCCccccccCceEEEEEeCCHHHH
Q 005078 572 ---------------------------GL-FGGPRASK-L-L-Q-I----P----ETRLFHHEYNSMVCTVEIVDDVRAA 611 (715)
Q Consensus 572 ---------------------------~~-~g~~~~~~-~-~-p-v----~----~~~~~~eE~FGPVl~v~~~~~~deA 611 (715)
++ .|+.. .+ + + | | + +|++++||+||||++|++|+|+|||
T Consensus 334 ~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~-~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~deA 412 (501)
T 1uxt_A 334 VDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR-LGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQA 412 (501)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB-CSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHHH
Confidence 22 24332 23 3 3 5 2 2 3689999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCC-CCCCCCCccCCcccccccccccccccccccccceEEEEE
Q 005078 612 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 690 (715)
Q Consensus 612 i~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~-~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v 690 (715)
|+++|+++|||++||||+|.++++++++++++|+|+||++ ....+.+||||.++||+| +++|++|+++||+.|+|
T Consensus 413 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~k~v 488 (501)
T 1uxt_A 413 IELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVF----REGIGYAVEAVTAYKTI 488 (501)
T ss_dssp HHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEES----CBSTTTTHHHHEEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCC----ccChHHHHHHhCceeEE
Confidence 9999999999999999999999999999999999999997 556678999999999986 46799999999999999
Q ss_pred EEcC
Q 005078 691 LRGN 694 (715)
Q Consensus 691 ~~~~ 694 (715)
+++.
T Consensus 489 ~~~~ 492 (501)
T 1uxt_A 489 VFNY 492 (501)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8864
No 32
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=1.7e-77 Score=676.22 Aligned_cols=401 Identities=16% Similarity=0.159 Sum_probs=345.0
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 42 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 113 (500)
T 2j6l_A 42 YCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKIL-- 113 (500)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 4578899999998888 88999999999999999999999999999999999999999999998877654432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
.++ ..|+..+++.++++++..+ ..|...+. ...+...+++++|+|||++|+|| ||. +++++++||
T Consensus 114 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 181 (500)
T 2j6l_A 114 --VEG--------VGEVQEYVDICDYAVGLSRMIGGPILPS--ERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181 (500)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHTTTCCCBEECC--SSTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceeEEEEecccEEEEECCCcchhhHHHHHHHHH
Confidence 122 2356677777777765443 23433221 11244567789999999999998 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+|+..+++++.+++.++ ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 182 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa~ 261 (500)
T 2j6l_A 182 MICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQE 261 (500)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhcc
Confidence 999999999999999999999999999988889 99999999998666888888899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC---------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 570 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 570 (715)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 340 (500)
T 2j6l_A 262 RFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPNV 340 (500)
T ss_dssp TTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 799999999988762
Q ss_pred -------------------------CeE-ecCccc--ccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005078 571 -------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (715)
Q Consensus 571 -------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 614 (715)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 341 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 420 (500)
T 2j6l_A 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAW 420 (500)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHHH
Confidence 122 244321 233 3 5 3 36889999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHH--HhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEE
Q 005078 615 IHQHGSAHTDCIVAEDQKVAETFL--CQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 691 (715)
Q Consensus 615 aN~~~~GL~a~i~t~d~~~~~~~~--~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~ 691 (715)
+|+++|||++||||+|.+++++++ +++++|+|+||++... ...+||||.|.||+| +++|.+|+++|++.|+|+
T Consensus 421 aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~ 496 (500)
T 2j6l_A 421 NNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG----RESGSDAWKQYMRRSTCT 496 (500)
T ss_dssp HHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSC----CEESTTGGGGGEEEEEEE
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCC----CcchHHHHHHhhceEEEE
Confidence 999999999999999999999999 7799999999986543 467899999999885 356999999999999998
Q ss_pred Ec
Q 005078 692 RG 693 (715)
Q Consensus 692 ~~ 693 (715)
++
T Consensus 497 ~~ 498 (500)
T 2j6l_A 497 IN 498 (500)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 33
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=2.1e-77 Score=675.35 Aligned_cols=400 Identities=16% Similarity=0.184 Sum_probs=348.1
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++++++|++||+.|+.++.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 99 (490)
T 2ve5_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA- 99 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578899999999888 899999999999999999999999999999999999999999999999887754321
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
++. ..|+...++.++++++..+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~A 166 (490)
T 2ve5_A 100 ---ETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp ---HHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHHH
Confidence 211 12677777788877754432 2333221 2356678899999999999998 685 567999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 167 LaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 9999999999999999999999999987 7 99999999996 677888899999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d~ 321 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 49999999999999999999999999999999999987 999999999999999 799999999998752
Q ss_pred ---------------------------CeE-ecCccc------cccc--c-C-----CCCCCccccccCceEEEEEeCCH
Q 005078 571 ---------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (715)
Q Consensus 571 ---------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 608 (715)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~~ 401 (490)
T 2ve5_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCCH
Confidence 122 233321 2333 5 2 36899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEE
Q 005078 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 688 (715)
Q Consensus 609 deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K 688 (715)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.|+||+| +++|.+|+++||+.|
T Consensus 402 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G----~~~G~~~~~~f~~~k 477 (490)
T 2ve5_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCC----CcchHHHHHHhheeE
Confidence 9999999999999999999999999999999999999999998777788999999999986 357999999999999
Q ss_pred EEEEcCcc
Q 005078 689 WILRGNGH 696 (715)
Q Consensus 689 ~v~~~~~~ 696 (715)
+|+++.++
T Consensus 478 ~v~~~~~~ 485 (490)
T 2ve5_A 478 SVQVELGD 485 (490)
T ss_dssp EEEEECSC
T ss_pred EEEEccCc
Confidence 99987753
No 34
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=8.1e-78 Score=677.17 Aligned_cols=395 Identities=16% Similarity=0.165 Sum_probs=335.2
Q ss_pred HHHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005078 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (715)
Q Consensus 267 l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 346 (715)
+.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 45 v~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 117 (497)
T 3i44_A 45 VIDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPI- 117 (497)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 35688999999998888 89999999999999999999999999999999999999999999999988765432
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeEEEEe-eeceeEEEEEcCC-Chh-hHHHHHHH
Q 005078 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASL 423 (715)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~PlGVV~~I~p~-~P~-~~~~~~~~ 423 (715)
.++.. .|+..+++.++++++..+.. ..+. ....+...+++ ++|+|||++|+|| ||. +.+++++|
T Consensus 118 ---~~a~~-------~ev~~~~~~~~~~a~~~~~~--~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (497)
T 3i44_A 118 ---DMALN-------AQTATGSSHIRNFIKAYKEF--SFQE-ALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIP 184 (497)
T ss_dssp ---HHHHH-------THHHHHHHHHHHHHHHHHHC--CSEE-ESSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHHH-------HHHHHHHHHHHHHHHHhhcc--cccc-cccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHH
Confidence 12221 24555566666555322111 0000 00112334566 9999999999998 684 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005078 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (715)
Q Consensus 424 ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 501 (715)
||++||+||+|||+.||+|+..+++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 185 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~a 260 (497)
T 3i44_A 185 ALLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNA 260 (497)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 8 99999999996 667888888999999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC-------
Q 005078 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (715)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 570 (715)
.||+++|||||||+||++||| |.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 261 a~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~~ 338 (497)
T 3i44_A 261 SNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQT 338 (497)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSC
T ss_pred hhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 399999999999999999999 9999999999999987 999999999999999 799999999988752
Q ss_pred ---------------------------CeE-ecCc-cc----cccc--c-C-----CCCCCccccccCceEEEEEeCCHH
Q 005078 571 ---------------------------VGL-FGGP-RA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (715)
Q Consensus 571 ---------------------------~~~-~g~~-~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 609 (715)
+++ .|+. .. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 339 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 418 (497)
T 3i44_A 339 GNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTED 418 (497)
T ss_dssp SSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHH
Confidence 222 2441 11 2333 5 2 368999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEE
Q 005078 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 689 (715)
Q Consensus 610 eAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~ 689 (715)
|||+++|+++|||++||||+|.++++++++++++|+|+||. ....+.+||||.|.||+| +++|++|+++||+.|+
T Consensus 419 eAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~ 493 (497)
T 3i44_A 419 EAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRA----REGGLWGIKEFLDTKA 493 (497)
T ss_dssp HHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCC----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcceeE
Confidence 99999999999999999999999999999999999999994 455678999999999986 4679999999999999
Q ss_pred EEE
Q 005078 690 ILR 692 (715)
Q Consensus 690 v~~ 692 (715)
|+.
T Consensus 494 v~~ 496 (497)
T 3i44_A 494 ISY 496 (497)
T ss_dssp ESC
T ss_pred EEe
Confidence 864
No 35
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=2.5e-77 Score=671.72 Aligned_cols=396 Identities=17% Similarity=0.182 Sum_probs=345.1
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.||+.++++..++ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 23 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 94 (475)
T 1euh_A 23 YEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGY-- 94 (475)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5688999999999888 89999999999999999999999999999999999999999999999988876542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCC----eEE-EEeeeceeEEEEEcCC-Chh-hHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALVQ 419 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~----~~~-~~~~~PlGVV~~I~p~-~P~-~~~~ 419 (715)
.++ ..|+..+++.++++++..+. .+...+.. . .+ ... +++++|+|||++|+|| ||. +.++
T Consensus 95 --~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 162 (475)
T 1euh_A 95 --KSA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG-S-FEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGS 162 (475)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG-G-TCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC-C-CCccccceeeEEEEeccceEEEECCCCchHHHHHH
Confidence 122 23677788888887764432 34432211 1 23 356 8899999999999998 584 6789
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHH
Q 005078 420 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (715)
Q Consensus 420 ~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i 497 (715)
+++|||++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|
T Consensus 163 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 999999999999999999999999999999987 8 99999999996 46678888899999999999999999999
Q ss_pred Hhhc-CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC----
Q 005078 498 KEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV---- 571 (715)
Q Consensus 498 ~~~a-~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~---- 571 (715)
++.| .||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~ 317 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA-DELVEKIREKVLALTIGNPE 317 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHTSCBSCGG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHH-HHHHHHHHHHHHhccCCCcc
Confidence 9988 59999999999999999999999999999999999987 999999999999999 7999999999876531
Q ss_pred -----------------------------eEe-cCcccccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 572 -----------------------------GLF-GGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 572 -----------------------------~~~-g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
++. |+.. .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 318 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~-~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai~ 396 (475)
T 1euh_A 318 DDADITPLIDTKSADYVEGLINDANDKGATALTEIKR-EGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIE 396 (475)
T ss_dssp GTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHH
T ss_pred ccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHHH
Confidence 221 3322 233 3 5 2 3678999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcC-CCCCCCCCccCCcccccccccccccccccccccceEEEEEEE
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~-~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
++|+++|||++||||+|.++++++++++++|+|+||+ +....+.+||||.|+||+| +++|++|+++||+.|+|++
T Consensus 397 ~an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G----~~~g~~~~~~~~~~k~v~~ 472 (475)
T 1euh_A 397 ISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAG----IQGVKYSIEAMTTVKSVVF 472 (475)
T ss_dssp HHHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEE
T ss_pred HHhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcC----CCccHHHHHHhCCeeEEEE
Confidence 9999999999999999999999999999999999999 7766778999999999986 4679999999999999987
Q ss_pred c
Q 005078 693 G 693 (715)
Q Consensus 693 ~ 693 (715)
+
T Consensus 473 ~ 473 (475)
T 1euh_A 473 D 473 (475)
T ss_dssp E
T ss_pred e
Confidence 4
No 36
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=3.9e-77 Score=667.59 Aligned_cols=386 Identities=21% Similarity=0.234 Sum_probs=327.5
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
.+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++. .++...++.....+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNE----WNAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999998876543 23333344445567788888
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005078 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (715)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~ 447 (715)
.++.|+... +.+.... ..+...+++++|+|||++|+|| || .+++++++|||++||+||+|||+.||+|+..++
T Consensus 93 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAADE-PVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSCE-ECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhccc-ccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 887776421 1111111 1234568899999999999998 68 467899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc---CCCEEEecCCcceEEEcCCCCH
Q 005078 448 KVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST---KIPVLGHADGICHVYVDKSANL 523 (715)
Q Consensus 448 ~~~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a---~~~~~lElGGk~p~iV~~dADl 523 (715)
+++.+ +||+|++|+|+| ++.+++++ .| +||+|+||||+++||.|++.| .||++||||||||+||++||||
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99986 599999999996 44556655 46 799999999999999999877 3999999999999999999999
Q ss_pred HHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhc----------------------------CCeE-
Q 005078 524 DVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE----------------------------GVGL- 573 (715)
Q Consensus 524 ~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~----------------------------~~~~- 573 (715)
|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++ |+++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAPDYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSCCEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999999999999987 999999999999999 79999999988763 1122
Q ss_pred ecCccc-cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcc
Q 005078 574 FGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSA 644 (715)
Q Consensus 574 ~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G 644 (715)
.|+... .++| | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 233221 2333 5 2 36899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCC--CCCCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 645 AVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 645 ~V~iN~~~~--~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
+|+||+... ..+.+||||.|+||+| +++|.+|+++||+.|+|+++..
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~G----r~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMG----SYHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEEC----CBSTHHHHHHTEEEEEEEECCS
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccC----ccchHHHHHHhhCeeEEEECCc
Confidence 999999763 3578899999999986 3579999999999999998754
No 37
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=5.7e-77 Score=674.36 Aligned_cols=400 Identities=16% Similarity=0.174 Sum_probs=340.5
Q ss_pred HHHHH-cCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 267 IIKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 267 l~~~~-tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
..+|. +|+.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 55 ~~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (516)
T 1uzb_A 55 SLNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNW 128 (516)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 46788 588999998888 89999999999999999999999999999999999999999999999988775542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIAS 422 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~ 422 (715)
.++. .|+..+++.++++++..+ ..+...+... ..+...+++++|+|||++|+|| || .+++++++
T Consensus 129 ----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 195 (516)
T 1uzb_A 129 ----VEAS--------ADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIV 195 (516)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHH
Confidence 1222 256666667776664332 2232211011 1345678899999999999998 58 57789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhh
Q 005078 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (715)
Q Consensus 423 ~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 500 (715)
|||++||+||+|||+.||+|+..+++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.
T Consensus 196 ~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~ 271 (516)
T 1uzb_A 196 GPVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEA 271 (516)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999987 7 99999999996 66788888889999999999999999999876
Q ss_pred c---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC
Q 005078 501 T---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 570 (715)
Q Consensus 501 a---------~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 570 (715)
| .||+++|||||||+||++|||||.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 272 aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~ 350 (516)
T 1uzb_A 272 AGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAY-EPVLERVLKRAERLS 350 (516)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHTTCC
T ss_pred hhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHH-HHHHHHHHHHHHhcc
Confidence 5 48999999999999999999999999999999999986 999999999999999 799999999987653
Q ss_pred C--------------------------------eE-ecCcc--ccccc--c-C-----CCCCCccccccCceEEEEEeCC
Q 005078 571 V--------------------------------GL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (715)
Q Consensus 571 ~--------------------------------~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 607 (715)
+ ++ .|+.. ..++| | | ++|++++||+||||++|++|+|
T Consensus 351 ~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 430 (516)
T 1uzb_A 351 VGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKD 430 (516)
T ss_dssp BSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEESS
T ss_pred CCCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeCC
Confidence 1 22 34432 12333 5 3 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC--CCCCccCCcccccccccccccccccccccce
Q 005078 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLL 685 (715)
Q Consensus 608 ~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~--~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft 685 (715)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++++++||
T Consensus 431 ~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~g~~~l~~f~ 507 (516)
T 1uzb_A 431 FAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNA---KTGALDYLRLFL 507 (516)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCC---CBTSHHHHHTTE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCC---ccchHHHHHHcC
Confidence 99999999999999999999999999999999999999999986543 4678999999999852 246889999999
Q ss_pred EEEEEEEc
Q 005078 686 TTRWILRG 693 (715)
Q Consensus 686 ~~K~v~~~ 693 (715)
+.|+|+++
T Consensus 508 ~~k~v~~~ 515 (516)
T 1uzb_A 508 EMKAVAER 515 (516)
T ss_dssp EEEEEEEE
T ss_pred CeeEEEec
Confidence 99999864
No 38
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=1.7e-77 Score=673.00 Aligned_cols=398 Identities=16% Similarity=0.116 Sum_probs=335.0
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.||.||+.++++..++ ++|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+||..
T Consensus 11 ~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 82 (474)
T 4h7n_A 11 RNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLS-- 82 (474)
T ss_dssp ECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--
Confidence 4578999999998888 89999999999999999999999999999999999999999999999987765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 424 (715)
++ ..|++.+++.+++|++.... ....... ...++...+..++|+|||++|+|| ||. +.+++++||
T Consensus 83 ---~~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~A 150 (474)
T 4h7n_A 83 ---IT--------VLEIDSFLASIDRWCGLAPELLQTSAKN-TSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPA 150 (474)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHHHCCEEEE-CSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHhhhhhcccccccC-CCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcc
Confidence 11 12556666666666543211 1111111 112345567788999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+++..+++++.+ + +|+|++|+++++.+.+..|..| +|+|+||||+++||.|++.+
T Consensus 151 LaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 151 LLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred hhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 9999999999999999999999998875 7 9999999999766677777765 99999999999999998877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC--------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 571 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~-------- 571 (715)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++..
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 303 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVEDG 303 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGGC
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHH-HHHHHHHHHHhhccccCCCccccc
Confidence 59999999999999999999999999999999999987 999999999999999 7999999999887632
Q ss_pred --------------------------eE-ecCccc---cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 572 --------------------------GL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 572 --------------------------~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
.+ .|+... .++| | | +++++++||+||||++|++|+|+||||+
T Consensus 304 ~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 383 (474)
T 4h7n_A 304 AIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVY 383 (474)
T ss_dssp SBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHH
Confidence 11 122111 1222 5 2 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC--CCCCccCCcccccccccccccccccccccceEEEEEE
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 691 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~--~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~ 691 (715)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++|+++|++.|+|+
T Consensus 384 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~---~~~G~~g~~~f~~~k~v~ 460 (474)
T 4h7n_A 384 LANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGG---SRVGAAGLKRFLRKQAFL 460 (474)
T ss_dssp HHHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESC---CSSTTHHHHTTEEEEEEE
T ss_pred HHHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCC---CcchHHHHHHhCeEEEEE
Confidence 99999999999999999999999999999999999987643 4678999999999862 245899999999999999
Q ss_pred EcCc
Q 005078 692 RGNG 695 (715)
Q Consensus 692 ~~~~ 695 (715)
++..
T Consensus 461 ~~~~ 464 (474)
T 4h7n_A 461 IKTN 464 (474)
T ss_dssp EECS
T ss_pred ECCC
Confidence 8765
No 39
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=3e-77 Score=669.75 Aligned_cols=395 Identities=15% Similarity=0.204 Sum_probs=339.1
Q ss_pred HHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Q 005078 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (715)
Q Consensus 269 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 348 (715)
+|.+|+.++++..++ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 13 ~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 84 (462)
T 3etf_A 13 NPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIK-- 84 (462)
T ss_dssp CTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--
Confidence 478899999988888 899999999999999999999999999999999999999999999999887654321
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHHH
Q 005078 349 YAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLAI 425 (715)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~AL 425 (715)
++. .|+..+++.++++++..+ ..+.. +.. ..+...+++++|+|||++|+|| || .+.+++++|||
T Consensus 85 --~a~--------~ev~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 151 (462)
T 3etf_A 85 --QAR--------AEVTKSAALCDWYAEHGPAMLNPE-PTL--VENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPIL 151 (462)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHTSCE-ECS--SGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHhHHHhcCCc-ccC--CCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHH
Confidence 221 245566666666654332 12222 111 1244578899999999999998 57 46789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc---
Q 005078 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST--- 501 (715)
Q Consensus 426 aaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a--- 501 (715)
++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+++.+.++.|..||+||+|+||||+++||.|++.+
T Consensus 152 aaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~~ 227 (462)
T 3etf_A 152 LAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAA 227 (462)
T ss_dssp HTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhcc
Confidence 999999999999999999999999987 7 99999999997555667778899999999999999999998877
Q ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC----------
Q 005078 502 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---------- 570 (715)
Q Consensus 502 ~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---------- 570 (715)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 228 ~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~~ 306 (462)
T 3etf_A 228 LKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEEND 306 (462)
T ss_dssp TCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTTCS
T ss_pred CCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHH-HHHHHHHHHHHHhhcCCCCccccCc
Confidence 49999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred ------------------------CeE-ecCcc--cccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005078 571 ------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 615 (715)
Q Consensus 571 ------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 615 (715)
+++ .|+.. ..++ + | | +++++++||+||||++|++|+|+||||+++
T Consensus 307 ~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 386 (462)
T 3etf_A 307 LGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALA 386 (462)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHH
Confidence 122 23321 1223 3 5 2 368899999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 616 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 616 N~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+| +++|++|+++||+.|+|+++
T Consensus 387 n~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 387 NDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFG----RELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEC
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHHhceeEEEEe
Confidence 999999999999999999999999999999999998777788999999999986 35699999999999999875
No 40
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.9e-77 Score=674.52 Aligned_cols=402 Identities=17% Similarity=0.171 Sum_probs=332.5
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++++++|++||+.|+.++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (508)
T 3r64_A 33 INPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR-- 104 (508)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH--
Confidence 3478899999998888 89999999999999999999999999999999999999999999999887654432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 425 (715)
.++ ..|+..+++.++++++..+......+.. ...+...+++++|+|||++|+|| ||. +++++++|||
T Consensus 105 --~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 173 (508)
T 3r64_A 105 --SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPAL 173 (508)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHH
Confidence 122 2378888999999987665432233211 12356778999999999999998 684 6789999999
Q ss_pred HhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 426 RSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 426 aaGN~vvlKps~~tp~t~-~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
++||+||+|||+.||+|+ .++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.|
T Consensus 174 aaGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa 249 (508)
T 3r64_A 174 AVGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249 (508)
T ss_dssp HTTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 999999886 8 99999999996 467788888899999999999999999998876
Q ss_pred ----CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC-----
Q 005078 502 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 571 (715)
Q Consensus 502 ----~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~----- 571 (715)
.||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|||||+++| |+|+++|+++++++.+
T Consensus 250 ~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 328 (508)
T 3r64_A 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH-DEFLEKFVEAVKNIPTGDPSA 328 (508)
T ss_dssp SSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred cccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHH-HHHHHHHHHHHHhccCCCCcc
Confidence 48999999999999999999999999999999999987 999999999999999 7999999999987521
Q ss_pred -----------------------------eE-ecCcccccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 572 -----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 572 -----------------------------~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
++ .|+.. .++ + | | +++++++||+||||++|++|+|+||||+
T Consensus 329 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~-~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (508)
T 3r64_A 329 EGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI-EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAE 407 (508)
T ss_dssp SSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE-ETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC-CCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHH
Confidence 11 13322 222 2 5 3 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEEE
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|++
T Consensus 408 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~G----r~~G~~~l~~ft~~k~v~~ 483 (508)
T 3r64_A 408 LANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLG----RFNGDWAIEEFTTDRWIGI 483 (508)
T ss_dssp HHTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC------------------------CCCHHHHHHHTEEEEEEEE
T ss_pred HHhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCC----cCccHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999998754 677899999999986 3569999999999999999
Q ss_pred cCcccc
Q 005078 693 GNGHVV 698 (715)
Q Consensus 693 ~~~~~~ 698 (715)
+.++.+
T Consensus 484 ~~~~~~ 489 (508)
T 3r64_A 484 KRSAEN 489 (508)
T ss_dssp ECCSTT
T ss_pred ecccch
Confidence 876544
No 41
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=3.6e-77 Score=672.60 Aligned_cols=399 Identities=17% Similarity=0.189 Sum_probs=326.3
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|+++..
T Consensus 27 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (485)
T 4dng_A 27 LNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI-- 98 (485)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578999999999888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~A 424 (715)
.++ ..|+..+++.++++++..+.. +...+. ....+...+++++|+|||++|+|| +| .+++++++||
T Consensus 99 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 167 (485)
T 4dng_A 99 --IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPA 167 (485)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHH
Confidence 122 236778888888887655433 332221 112356778999999999999998 68 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005078 425 IRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~-~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 501 (715)
|++||+||+|||+.||+++ .++++++.+ + ||+|+||+|++ ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 168 LaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 168 IALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999 999999987 8 99999999996 556888888999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC------
Q 005078 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 571 (715)
Q Consensus 502 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 571 (715)
.||++||||||||+||++|||||.|++.+++++|.|+| .|+|++|||||+++| |+|+++|+++++++.+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~~ 322 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY-DEFVEKFTARVKQLPYGDQTDP 322 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHH-HHHHHHHHHHHHhccCCCCCcC
Confidence 49999999999999999999999999999999999987 999999999999999 7999999999987532
Q ss_pred ----------------------------eE-ecCcccccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005078 572 ----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (715)
Q Consensus 572 ----------------------------~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 614 (715)
++ .|+.+ .++ + | | +++++++||+||||++|++|+|+||||++
T Consensus 323 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~-~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~~ 401 (485)
T 4dng_A 323 KTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR-VGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDM 401 (485)
T ss_dssp TCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC-CCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHHH
Confidence 11 12222 222 2 5 2 36889999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEEEc
Q 005078 615 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 693 (715)
Q Consensus 615 aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~ 693 (715)
+|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|+++
T Consensus 402 an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~t~~k~v~~~ 477 (485)
T 4dng_A 402 ANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVG----RFGNPWVVEEFTVTKWISIQ 477 (485)
T ss_dssp HHCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEEE
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHhhceEEEEEe
Confidence 9999999999999999999999999999999999998754 678999999999886 35699999999999999886
Q ss_pred Cc
Q 005078 694 NG 695 (715)
Q Consensus 694 ~~ 695 (715)
.+
T Consensus 478 ~~ 479 (485)
T 4dng_A 478 KQ 479 (485)
T ss_dssp C-
T ss_pred cC
Confidence 54
No 42
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.7e-76 Score=666.23 Aligned_cols=399 Identities=15% Similarity=0.142 Sum_probs=342.6
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 26 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 97 (486)
T 1t90_A 26 VNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNT-- 97 (486)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578899999999888 89999999999999999999999999999999999999999999999988775442
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~A 424 (715)
.++ ..|+..+++.+++++...+. .++..+.. ..+...+++|+|+|||++|+|| || .+.+++++||
T Consensus 98 --~~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 165 (486)
T 1t90_A 98 --KEA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMA 165 (486)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHHH
Confidence 122 23677778888877654332 23332211 1345668899999999999998 58 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 501 (715)
|++||+||+|||+.||+|+..+++++++ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.|
T Consensus 166 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 166 IALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999987 8 99999999997556778888899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccce-EEEcCcccCchhHHHHHHHHHhcCC-------
Q 005078 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMET-LLVHKDLACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 502 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~r-v~V~~~i~d~~f~~~l~~~~~~~~~------- 571 (715)
.||+++|||||||+||++|||||.|++.+++++|.|+| +|+|++| +|||++ | |+|+++|+++++++.+
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~~ 319 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDDG 319 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-H-HHHHHHHHHHHHhcccCCCCccC
Confidence 59999999999999999999999999999999999987 9999999 999999 9 7999999999876531
Q ss_pred ---------------------------eE-ecCcc---cccc-c-c-C-----CCCCCccccccCceEEEEEeCCHHHHH
Q 005078 572 ---------------------------GL-FGGPR---ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 612 (715)
Q Consensus 572 ---------------------------~~-~g~~~---~~~~-~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 612 (715)
++ .|+.+ ..++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 320 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~eai 399 (486)
T 1t90_A 320 VFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAI 399 (486)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHHH
Confidence 22 24331 1233 3 5 2 357899999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEE
Q 005078 613 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 691 (715)
Q Consensus 613 ~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~ 691 (715)
+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.|+||+|. ++++|++|+++||+.|+|+
T Consensus 400 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~--~~~~g~~g~~~~~~~k~v~ 477 (486)
T 1t90_A 400 EIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGT--LHANGKDSVDFYTRKKVVT 477 (486)
T ss_dssp HHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESS--SCSSHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCC--CccchHHHHHHhhceEEEE
Confidence 999999999999999999999999999999999999986543 3578999999999852 3467999999999999998
Q ss_pred EcC
Q 005078 692 RGN 694 (715)
Q Consensus 692 ~~~ 694 (715)
++.
T Consensus 478 ~~~ 480 (486)
T 1t90_A 478 ARY 480 (486)
T ss_dssp EEC
T ss_pred Eec
Confidence 854
No 43
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=4.3e-76 Score=662.68 Aligned_cols=391 Identities=16% Similarity=0.171 Sum_probs=316.5
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
.+|.+|+.++++..++ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 28 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 99 (478)
T 3ty7_A 28 INPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPL-- 99 (478)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4578999999999888 89999999999999999999999999999999999999999999999988776542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Ch-hhHHHHHHHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~A 424 (715)
.++. ..|+..+++.++++++..+. .+.. . +...+++++|+|||++|+|| +| .+++++++||
T Consensus 100 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (478)
T 3ty7_A 100 --SLSE-------RVHYQMGLNHFVAARDALDNYEFEE-R------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA 163 (478)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHHHHCCSEE-E------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhhccc-C------CccceEEecCceEEEEECCCcchHHHHHHHHHHH
Confidence 2221 12455666666666543321 1211 1 12356789999999999998 57 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005078 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (715)
Q Consensus 425 LaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 501 (715)
|++||+||+|||+.||+|+.++++++++ + ||+|++|+|++ +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 164 FAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 9999999999999999999999999987 7 99999999996 667888898999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC--------
Q 005078 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (715)
Q Consensus 502 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 570 (715)
.||+++|||||||+||++|||||.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 318 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK-DAFLAELKEQFSQVRVGNPREDG 318 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------CeEe-cCc-c----ccccc--c-C-----CCCCCccccccCceEEEEEeCCHHH
Q 005078 571 --------------------------VGLF-GGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (715)
Q Consensus 571 --------------------------~~~~-g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~de 610 (715)
+++. |+. . ..+++ | | +++++++||+||||++|++|+|+||
T Consensus 319 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~e 398 (478)
T 3ty7_A 319 TQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDE 398 (478)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHHH
Confidence 2222 331 1 12333 5 2 3688999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCCCCCCccCCcccccccccccccccccccccceEEEEE
Q 005078 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 690 (715)
Q Consensus 611 Ai~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v 690 (715)
||+++|+++|||++||||+|.++++++++++++|+|+||+ ....+.+||||.++||+| +++|++|+++||+.|+|
T Consensus 399 Ai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G----~~~G~~~l~~~t~~k~v 473 (478)
T 3ty7_A 399 AIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLG----REWGDYGIEEFLEVKSI 473 (478)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEEE
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcCeEEE
Confidence 9999999999999999999999999999999999999999 555677899999999986 35799999999999998
Q ss_pred EE
Q 005078 691 LR 692 (715)
Q Consensus 691 ~~ 692 (715)
+.
T Consensus 474 ~~ 475 (478)
T 3ty7_A 474 AG 475 (478)
T ss_dssp ET
T ss_pred EE
Confidence 73
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=1e-75 Score=663.74 Aligned_cols=405 Identities=13% Similarity=0.117 Sum_probs=334.4
Q ss_pred HHHcCCcc-eeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005078 269 KVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (715)
Q Consensus 269 ~~~tg~~i-GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 347 (715)
+|.||+.+ +++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 13 nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 85 (510)
T 1ez0_A 13 NAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV- 85 (510)
T ss_dssp CTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred CCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 47889999 6998888 899999999999999999999999999999999999999999999999988765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHH--HhcccccccccccccccCCC-eEEEEeeeceeEEEEEcCC-Chh-hH--HHH
Q 005078 348 GYAKSLVSRLALKPGKISSLAKSIRI--LADMEEPIGQILKRTELADG-LILEKTSCPLGVLLIVFES-RPD-AL--VQI 420 (715)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~-~~~~~~~~PlGVV~~I~p~-~P~-~~--~~~ 420 (715)
++. .++..+...++++++.++. +.+ .......+.. .+.+ ...+++|+|+|||++|+|| ||. ++ +++
T Consensus 86 ---~a~-~Ev~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 158 (510)
T 1ez0_A 86 ---RLT-GEIARTANQLRLFADVVNSGSYHQ--AILDTPNPTR-APLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGD 158 (510)
T ss_dssp ---HHH-HHHHHHHHHHHHHHHHHHHTGGGC--EEEECCBTTC-SSSCBCCEEEEEEECSCEEEECCSSCTTTTSTTSHH
T ss_pred ---HHH-HHHHHHHHHHHHHHHHHHhCcccc--cccccccccc-CCCCCCCceEEEecCcEEEEECCccchhhhhhhHHH
Confidence 221 1222223334444444433 111 0000000100 0111 1357889999999999998 685 43 399
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 005078 421 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 498 (715)
Q Consensus 421 ~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~ 498 (715)
++|||++||+||+|||+.||+|+..+++++.++|.++ ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|+
T Consensus 159 ~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~ 238 (510)
T 1ez0_A 159 TASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALF 238 (510)
T ss_dssp HHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999999888889 99999999996 667888888899999999999999999999
Q ss_pred hhcC-----CCEEEecCCcceEEEcCCCCHH--HHHHHHHhhccCCCc-cccccceEEEcCc-ccCchhHHHHHHHHHhc
Q 005078 499 ESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHE 569 (715)
Q Consensus 499 ~~a~-----~~~~lElGGk~p~iV~~dADl~--~A~~~iv~~~f~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~~~~~~~ 569 (715)
+.|. ||+++|||||||+||++|||+| .|++.+++++|.|+| +|+|++|+|||++ +| |+|+++|+++++++
T Consensus 239 ~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~ 317 (510)
T 1ez0_A 239 NLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPET-QAFIETAQSLIRQQ 317 (510)
T ss_dssp HHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHH-HHHHHHHHHHHHHC
T ss_pred HHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccH-HHHHHHHHHHHHhc
Confidence 8773 9999999999999999999999 999999999999987 9999999999999 99 79999999988765
Q ss_pred -------------------------CCeEe-cCccccccc--c-C-----CC---CCCccccccCceEEEEEeCCHHHHH
Q 005078 570 -------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIVDDVRAAI 612 (715)
Q Consensus 570 -------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~~~~~deAi 612 (715)
|+++. |+. . ++| | | ++ |++++||+||||++|++|+|+||||
T Consensus 318 ~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~-g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~~~deai 395 (510)
T 1ez0_A 318 SPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-E-SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADML 395 (510)
T ss_dssp CCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-C-TTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-C-CCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeCCHHHHH
Confidence 23332 443 2 433 5 3 23 8999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCH--HHHHHHHHhc--CcceEEEcCCCC---CCCCCccCC-cccccccccccccccccccccc
Q 005078 613 DHIHQHGSAHTDCIVAEDQ--KVAETFLCQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARGPVGVEGL 684 (715)
Q Consensus 613 ~~aN~~~~GL~a~i~t~d~--~~~~~~~~~l--~~G~V~iN~~~~---~~~~~pfG~-g~~sG~~~~~~~~~g~~gl~~f 684 (715)
+++|+++|||++||||+|. ++++++++++ ++|+|+||++.. ..+.+|||| +++||+|++ +++|++|+++|
T Consensus 396 ~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~--~~~G~~gl~~~ 473 (510)
T 1ez0_A 396 SLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAS--TSVGAEAIHRW 473 (510)
T ss_dssp HHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSC--CSSSGGGGGGG
T ss_pred HHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCC--CCccHHHHHHh
Confidence 9999999999999999987 8999999999 899999998764 346789999 688888643 34699999999
Q ss_pred eEEEEEEE
Q 005078 685 LTTRWILR 692 (715)
Q Consensus 685 t~~K~v~~ 692 (715)
++.|++.-
T Consensus 474 ~~~k~~~~ 481 (510)
T 1ez0_A 474 LRPVAYQA 481 (510)
T ss_dssp EEEEEEES
T ss_pred heEEEEcC
Confidence 99997654
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=9.3e-76 Score=666.75 Aligned_cols=403 Identities=15% Similarity=0.100 Sum_probs=336.6
Q ss_pred HHHHHcCCcce-eEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005078 267 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (715)
Q Consensus 267 l~~~~tg~~iG-T~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 345 (715)
+.+|.||+.++ ++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 45688999998 888888 89999999999999999999999999999999999999999999999988876542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc---ccccc----cccccCCCeEEEEeeeceeEEEEEcCC-Chhh-
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDA- 416 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~- 416 (715)
. ++. .|+..+++.++++++..+. .+... +......+...+++++|+|||++|+|| ||..
T Consensus 118 ~----~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 A----RLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 1 221 1344444555544432211 11111 100001233467889999999999998 6854
Q ss_pred H--HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHH
Q 005078 417 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 492 (715)
Q Consensus 417 ~--~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~ 492 (715)
. .++++|||++||+||+|||+.||+|+..+++++.+++.++ ||+|+||+|++ +.++++.|..||+||+|+||||++
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 2 3899999999999999999999999999999999988889 99999999996 557888888899999999999999
Q ss_pred HHHHHHhhc---C--CCEEEecCCcceEEEcCCC---CHHHHHHHHHhhccCCCc-cccccceEEEcCc-ccCchhHHHH
Q 005078 493 LVSQIKEST---K--IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNEL 562 (715)
Q Consensus 493 ~g~~i~~~a---~--~~~~lElGGk~p~iV~~dA---Dl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~-i~d~~f~~~l 562 (715)
+||.|++.| . ||+++|||||||+||++|| |+|.|++.+++++|.|+| +|+|++|+|||++ || |+|+++|
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l 344 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADA-DRFTTAA 344 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHH-HHHHHHH
Confidence 999999877 3 8999999999999999999 889999999999999987 9999999999997 99 7999999
Q ss_pred HHHHHhc-------------------------CCeEe-cCccccccc--c-C-----CC---CCCccccccCceEEEEEe
Q 005078 563 VVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIV 605 (715)
Q Consensus 563 ~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~~ 605 (715)
+++++++ |+++. |+.. .++| | | ++ |++++||+||||++|++|
T Consensus 345 ~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 9998764 33332 4433 3333 5 3 23 799999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEec--CHHHHHHHHHhcC--cceEEEcCCCC---CCCCCccCC-ccccccccccccccc
Q 005078 606 DDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 677 (715)
Q Consensus 606 ~~~deAi~~aN~~~~GL~a~i~t~--d~~~~~~~~~~l~--~G~V~iN~~~~---~~~~~pfG~-g~~sG~~~~~~~~~g 677 (715)
+|+||||+++|+++|||++||||+ |.+++++|+++++ +|+|+||+++. ..+.+|||| .+.||+| +.|.+|
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~g--r~~~~G 501 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF--GATSVG 501 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCT--TCCSSS
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCC--CCCCCc
Confidence 999999999999999999999999 8999999999998 99999999654 347889999 8988885 444569
Q ss_pred ccccccceEEEEEE
Q 005078 678 PVGVEGLLTTRWIL 691 (715)
Q Consensus 678 ~~gl~~ft~~K~v~ 691 (715)
++|+++||+.|++.
T Consensus 502 ~~gl~~~~~~k~~q 515 (528)
T 3v4c_A 502 TMSIRRFLRPVAYQ 515 (528)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhchhHHhh
Confidence 99999999999743
No 46
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.7e-74 Score=646.41 Aligned_cols=392 Identities=16% Similarity=0.111 Sum_probs=331.6
Q ss_pred HHHcCCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Q 005078 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (715)
Q Consensus 269 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 348 (715)
+|.||+.++++..++ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 26 ~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 96 (490)
T 3ju8_A 26 DPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPL--- 96 (490)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---
Confidence 578999999999888 89999999999999999999999999999999999999999999999988776542
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005078 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (715)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 425 (715)
.++. .|+..+++.++++++..+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++|||
T Consensus 97 -~ea~--------~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 164 (490)
T 3ju8_A 97 -WESA--------TEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPAL 164 (490)
T ss_dssp -HHHH--------HHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred -HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHHH
Confidence 1221 2455555556555433221 2222211 1223456679999999999998 684 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC--
Q 005078 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-- 502 (715)
Q Consensus 426 aaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~-- 502 (715)
++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+++.++++.|..||+||+|+||||+++||.|++++.
T Consensus 165 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~ 240 (490)
T 3ju8_A 165 LAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQ 240 (490)
T ss_dssp HHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTTC
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhcc
Confidence 999999999999999999999999987 7 999999999976678888889999999999999999999998874
Q ss_pred -CCE-EEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcc-cCchhHHHHHHHHHhcCC-------
Q 005078 503 -IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDL-ACNGALNELVVELQHEGV------- 571 (715)
Q Consensus 503 -~~~-~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i-~d~~f~~~l~~~~~~~~~------- 571 (715)
||+ +||||||||+||++|||||.|++.+++|+|.|+| .|+|++|+|||+++ | |+|+++|+++++++.+
T Consensus 241 ~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~~~ 319 (490)
T 3ju8_A 241 PQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWG-DALLARLVAVSATLRVGRFDEQP 319 (490)
T ss_dssp TTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTCSS
T ss_pred CCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 898 7999999999999999999999999999999987 99999999999996 9 7999999999887632
Q ss_pred ----------------------------eE-ecCccc--ccc-c-c-C----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005078 572 ----------------------------GL-FGGPRA--SKL-L-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (715)
Q Consensus 572 ----------------------------~~-~g~~~~--~~~-~-p-v----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 613 (715)
++ .|+.+. .++ + | | +++++++||+||||++|++|+|+||||+
T Consensus 320 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi~ 399 (490)
T 3ju8_A 320 APFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAIR 399 (490)
T ss_dssp CCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHHH
Confidence 11 122111 122 2 4 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCCCCC-CCCCccCCcccccccccccccccccccccceEEEEEEE
Q 005078 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 614 ~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~~~~-~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.|.||. .++++||+.|+|++
T Consensus 400 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~----------~~~~~~~~~k~v~~ 469 (490)
T 3ju8_A 400 EANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGN----------HRPSAYYAADYCAY 469 (490)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBS----------SCCEETTHHHHHEE
T ss_pred HHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccch----------hHHHhhheeEEEEE
Confidence 99999999999999999999999999999999999997653 46789999887754 47899999999998
Q ss_pred cCcc
Q 005078 693 GNGH 696 (715)
Q Consensus 693 ~~~~ 696 (715)
+...
T Consensus 470 ~~~~ 473 (490)
T 3ju8_A 470 PVAS 473 (490)
T ss_dssp EEEE
T ss_pred eccc
Confidence 7543
No 47
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=4.4e-73 Score=645.15 Aligned_cols=399 Identities=16% Similarity=0.173 Sum_probs=330.3
Q ss_pred HHHHc-CCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
Q 005078 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 345 (715)
Q Consensus 268 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~-~~~l~~~~~~d~~~~~ 345 (715)
.+|.+ ++.++++..++ .+||++|+++|++||+.|+++|.++|.++|++++++|+++ +++|++++..|++++.
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~ 155 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTV 155 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCH
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCH
Confidence 45676 67888888888 8999999999999999999999999999999999999999 9999999887665432
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHH
Q 005078 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (715)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 422 (715)
.++..+ ++..+++.++++++..+. .+.... . .+.+...++++.|+|||++|+|| ||. +..++++
T Consensus 156 ----~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 156 ----IQAEID-------AAAELIDFFRFNAKFAVELEGEQPI-S-VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ----HHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCC-C-CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ----HHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCcc-C-CCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 233222 244445555554433211 121111 0 11234456778889999999998 685 4678999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhh
Q 005078 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (715)
Q Consensus 423 ~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 500 (715)
||| +||+||+|||+.||+++.++++++.+ + ||+|+||+|+| +.++++.|..||+|++|+||||+++|+.|+++
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 69999999999999999999999987 8 99999999996 66788999999999999999999999999887
Q ss_pred c---CC------CEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcC
Q 005078 501 T---KI------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 570 (715)
Q Consensus 501 a---~~------~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 570 (715)
+ .| |+++|||||||+||++|||||.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~-d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW-PQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHTCC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchH-HHHHHHHHHHHHhcc
Confidence 7 25 499999999999999999999999999999999987 999999999999999 799999999998763
Q ss_pred C------------------------------------eE-ecCccc--cccc--c-C-----CCCCCccccccCceEEEE
Q 005078 571 V------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVE 603 (715)
Q Consensus 571 ~------------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~ 603 (715)
+ ++ .|+... .++| | | +++++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 1 11 122111 2333 5 2 468999999999999999
Q ss_pred EeCC--HHHHHHHH-HhcCCCceeEEEecCHHHHHHHHHhcC--cceEEEcCCCCC--CCCCccCCcccccccccccccc
Q 005078 604 IVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD--SAAVFHNASTRF--CDGARFGLGAEVGISTSRIHAR 676 (715)
Q Consensus 604 ~~~~--~deAi~~a-N~~~~GL~a~i~t~d~~~~~~~~~~l~--~G~V~iN~~~~~--~~~~pfG~g~~sG~~~~~~~~~ 676 (715)
+|+| +||||+++ |+++|||++||||+|.+++++++++++ +|+|+||+.+.. .+.+||||.+.||++. +++
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~---~~~ 533 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTND---KPG 533 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCC---CTT
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCC---ccC
Confidence 9996 79999999 799999999999999999999999965 999999997543 4678999999998852 467
Q ss_pred cccccccceEEEEEEEcC
Q 005078 677 GPVGVEGLLTTRWILRGN 694 (715)
Q Consensus 677 g~~gl~~ft~~K~v~~~~ 694 (715)
|++++++|++.|+|....
T Consensus 534 G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 534 GPHYILRWTSPQVIKETH 551 (563)
T ss_dssp STTGGGGGBCCEEEEEEC
T ss_pred CHHHHHHhCceEEEEEeC
Confidence 999999999999998754
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=1.3e-72 Score=674.19 Aligned_cols=429 Identities=17% Similarity=0.168 Sum_probs=356.2
Q ss_pred HHHHHHHHHHHHcCC--c-EEEEeCCC-----cchHHHHHc-CCcceeEEecCCcccccHhhHHHHHHHHHHHHHHHhcC
Q 005078 240 TAKVNAAYCAACAGI--P-VVITSGFA-----MDSIIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQAL 310 (715)
Q Consensus 240 ~~Kl~aa~~a~~~gv--~-v~I~~g~~-----~~~l~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~ 310 (715)
+..+++++...+... . -.+++|.. .-.+.+|.+ ++.+|++..++ .++|++|+++|++||+.|+.+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~I~G~~~~~~~~~~v~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~ 587 (1026)
T 4f9i_A 514 RAAFPKHIAQVRTQLGKTYPLFINGKEVRTNDLIPTVNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDT 587 (1026)
T ss_dssp HHHHHHHHHHHHTTCCEEECEEETTEEECCSCEEEEEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhccccccCceECCEEecCCCcEEEeCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccC
Confidence 445556665555442 2 12444431 123466776 77889988888 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccc
Q 005078 311 QSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTE 389 (715)
Q Consensus 311 ~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~ 389 (715)
|.++|.++|++++++|++|+++|++++++|.+++. .++ ..|+..+++.+++++...+.. +...+.
T Consensus 588 ~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~-- 653 (1026)
T 4f9i_A 588 DPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQW----DQA--------YADVTEAIDFLEYYAREMIRLGQPQRVG-- 653 (1026)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH----HHH--------HHHHHHHHHHHHHHHHHHHHHTSCEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hhH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc--
Confidence 99999999999999999999999999887765432 122 236777788888877654322 221111
Q ss_pred cCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEe
Q 005078 390 LADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLV 466 (715)
Q Consensus 390 ~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv 466 (715)
...+...++.++|+|||++|+|| ||. +.++++++||++||+||+|||+.||+++..+++++++ + ||+|+||+|
T Consensus 654 ~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a~ALaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV 729 (1026)
T 4f9i_A 654 HAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFT 729 (1026)
T ss_dssp CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEEC
T ss_pred CCCCccceeEeecCceEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEE
Confidence 12355677889999999999998 674 6789999999999999999999999999999999987 8 999999999
Q ss_pred cC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcC---------CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccC
Q 005078 467 TS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKID 536 (715)
Q Consensus 467 ~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~---------~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~f~ 536 (715)
+| +.++++.|..||+|++|+||||+++|+.|++.++ ||+++|||||||+||++|||+|.|++.+++|+|.
T Consensus 730 ~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~ 809 (1026)
T 4f9i_A 730 PGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFG 809 (1026)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHG
T ss_pred ecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHhhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHh
Confidence 96 6678888889999999999999999999988764 7999999999999999999999999999999999
Q ss_pred CCc-cccccceEEEcCcccCchhHHHHHHHHHhcCC---------------------------------e-EecCccc--
Q 005078 537 YPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV---------------------------------G-LFGGPRA-- 579 (715)
Q Consensus 537 n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~---------------------------------~-~~g~~~~-- 579 (715)
|+| .|+|++|+|||++|| |+|+++|+++++++.+ + +.|+...
T Consensus 810 ~aGQ~C~A~~rl~V~~~i~-d~f~~~L~~~~~~l~vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~ 888 (1026)
T 4f9i_A 810 FQGQKCSACSRVIVLDAVY-DKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAG 888 (1026)
T ss_dssp GGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSS
T ss_pred CCCCCCCCCceEEecHHHH-HHHHHHHHHHHHhcccCCcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCC
Confidence 987 999999999999999 7999999999987632 1 1233221
Q ss_pred cccc--c-C-----CCCCCccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcCcceEEEcCC
Q 005078 580 SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS 651 (715)
Q Consensus 580 ~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~~G~V~iN~~ 651 (715)
.++| | | +++++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.
T Consensus 889 ~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~ 968 (1026)
T 4f9i_A 889 EGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRN 968 (1026)
T ss_dssp SSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSC
T ss_pred CCceecceeeecCCCCccccCceecCcEEEEEEeCCHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCC
Confidence 1333 5 2 368899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC--CCCCccCCcccccccccccccccccccccceEEEEEEEcCcc
Q 005078 652 TRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH 696 (715)
Q Consensus 652 ~~~--~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~~ 696 (715)
+.. .+..||||.|.||+|. +++|++++++|++.|+|..+...
T Consensus 969 ~~~~~~~~~PFGG~k~SG~G~---~~gG~~~l~~f~~~k~v~~~~~~ 1012 (1026)
T 4f9i_A 969 NTGALVERQPFGGARMSGVGT---KAGGPDYLLHFMDPRVVTENTMR 1012 (1026)
T ss_dssp SCCCCTTTSCBCCCGGGBSSC---CBTSTTTGGGGEEEEEEEEECCB
T ss_pred CCCCCCCCCCCCCcCcCCCCC---CcCCHHHHHHhceEEEEEEeccc
Confidence 654 3678999999998852 35799999999999999987653
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=1.5e-71 Score=633.10 Aligned_cols=396 Identities=15% Similarity=0.138 Sum_probs=323.6
Q ss_pred HHHHcCCcceeEEecCCcccccHhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005078 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (715)
Q Consensus 268 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~a-~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 346 (715)
.+|.||+.++++...+ +|+++|+++|++| |+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~nP~tg~~i~~~~~~~-------~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (534)
T 2y53_A 27 TDPVTGVALVRVSSEG-------LDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTR- 98 (534)
T ss_dssp ECTTTCCEEEEECCTT-------CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCCH-------HHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 4578899999886643 6899999999999 599999999999999999999999999999999988775542
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc--------cccccccccCCCeEEEEeeece-eEEEEEcCC-Chh-
Q 005078 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI--------GQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD- 415 (715)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~Pl-GVV~~I~p~-~P~- 415 (715)
.++. .|+...++.+++++...+.. ++..+. ..+.....+++++|+ |||++|+|| ||.
T Consensus 99 ---~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~ 166 (534)
T 2y53_A 99 ---NDSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESL-SKDRSFSAQHVLSPTRGVALFINAFNFPSW 166 (534)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEEC-STTSSEEEEEEEEECSSCEEEECCTTCTTH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccC-CCCCcccceEEEecCCCEEEEECCCchHHH
Confidence 2222 14555555566555432111 221111 111222457889997 999999998 585
Q ss_pred hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHH
Q 005078 416 ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKL 493 (715)
Q Consensus 416 ~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~ 493 (715)
+++++++|||++||+||+|||+.||+|+..+++++.++ - ||+|+||+|+| +.++++.| +++|+|+||||+++
T Consensus 167 ~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~~ 240 (534)
T 2y53_A 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSADT 240 (534)
T ss_dssp HHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHHH
Confidence 67799999999999999999999999999999999872 3 69999999996 33333333 57999999999999
Q ss_pred HHHHHhhc-----CCCEEEecCCcceEEEcCCC-----CHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHH
Q 005078 494 VSQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNEL 562 (715)
Q Consensus 494 g~~i~~~a-----~~~~~lElGGk~p~iV~~dA-----Dl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l 562 (715)
||.|++.+ .||++||||||||+||++|| |||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|
T Consensus 241 G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l 319 (534)
T 2y53_A 241 AATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL-EPVLEAL 319 (534)
T ss_dssp HHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHH
T ss_pred HHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHH-HHHHHHH
Confidence 99998764 59999999999999999999 999999999999999987 999999999999999 7999999
Q ss_pred HHHHHhcCC---------------------------------eE-ecCcc--------ccccc--c-C----C-C--CCC
Q 005078 563 VVELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I----P-E--TRL 590 (715)
Q Consensus 563 ~~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-v----~-~--~~~ 590 (715)
+++++++.+ ++ .|+.. ..++| | | + + +++
T Consensus 320 ~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~i 399 (534)
T 2y53_A 320 KAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLL 399 (534)
T ss_dssp HHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSST
T ss_pred HHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCHH
Confidence 999887532 23 34432 12333 5 3 2 2 589
Q ss_pred ccccccCceEEEEEeC---CH-----HHHHHHHHhcCCCceeEEEecCHHHHHHHHHhc--CcceEEEcCCCC-------
Q 005078 591 FHHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV--DSAAVFHNASTR------- 653 (715)
Q Consensus 591 ~~eE~FGPVl~v~~~~---~~-----deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l--~~G~V~iN~~~~------- 653 (715)
++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+|+||+++.
T Consensus 400 ~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~~ 479 (534)
T 2y53_A 400 HDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGH 479 (534)
T ss_dssp TTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCCS
T ss_pred HhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCccccccccc
Confidence 9999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred --CCCCCccCCccccccccccccc-ccccccccceEEEEEEEcC
Q 005078 654 --FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILRGN 694 (715)
Q Consensus 654 --~~~~~pfG~g~~sG~~~~~~~~-~g~~gl~~ft~~K~v~~~~ 694 (715)
..+.+||||.|+||+| ++ +|++|+++|++.|++....
T Consensus 480 ~~~~~~~pfGG~k~SG~G----r~~~g~~~l~~~~~~k~v~~~p 519 (534)
T 2y53_A 480 GNVMPMSLHGGPGRAGGG----EELGGLRALAFYHRRSAIQAAS 519 (534)
T ss_dssp SCCCTTSEECCSGGGCSC----CEESGGGGGGGGEEEEEEEEEH
T ss_pred CCCCCCCCCCCcccCCCC----CCcchHHHHHHHhhhheeecCH
Confidence 2467899999999985 24 5899999999999987643
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=2.1e-71 Score=662.30 Aligned_cols=384 Identities=17% Similarity=0.154 Sum_probs=328.9
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
.+|+++|+++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++. .++ ..|+..+++
T Consensus 549 ~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai~ 616 (1001)
T 3haz_A 549 PDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAAD 616 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887665432 122 247888888
Q ss_pred HHHHHhccccc-ccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005078 370 SIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 446 (715)
Q Consensus 370 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l 446 (715)
.+++++...+. .+..... ..+.+...+++++|+|||++|+|| ||. +.++++++||++||+||+|||+.||+|+..+
T Consensus 617 ~lr~~a~~a~~~~g~~~~~-~~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l 695 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSETAM-PGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREA 695 (1001)
T ss_dssp HHHHHHHHHHHHHSSCEEC-CCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccc-cCCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHH
Confidence 88888865543 2322111 112356778899999999999998 684 6789999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhc------CCCEEEecCCcceEEEc
Q 005078 447 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYVD 518 (715)
Q Consensus 447 ~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a------~~~~~lElGGk~p~iV~ 518 (715)
++++++ + +|+|+||+|+| +++ ++.|..||+||+|+||||+++||.|++.+ .||+++|||||||+||+
T Consensus 696 ~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~ 770 (1001)
T 3haz_A 696 VALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIAD 770 (1001)
T ss_dssp HHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEEC
T ss_pred HHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEc
Confidence 999987 7 99999999996 555 88888999999999999999999998764 38999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHHhcCCe-------------------------
Q 005078 519 KSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGVG------------------------- 572 (715)
Q Consensus 519 ~dADl~~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~------------------------- 572 (715)
+|||+|+|++.+++|+|.|+| +|+|++|||||++|| |+|+++|+++++++.+.
T Consensus 771 ~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i 849 (1001)
T 3haz_A 771 ATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI 849 (1001)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHH
Confidence 999999999999999999987 999999999999999 79999999999876321
Q ss_pred --------EecCccc-ccc-c-c-C---CCCCCccccccCceEEEEEeCC--HHHHHHHHHhcCCCceeEEEecCHHHHH
Q 005078 573 --------LFGGPRA-SKL-L-Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVAE 635 (715)
Q Consensus 573 --------~~g~~~~-~~~-~-p-v---~~~~~~~eE~FGPVl~v~~~~~--~deAi~~aN~~~~GL~a~i~t~d~~~~~ 635 (715)
+.|+... .++ + | | +++.+++||+||||++|++|++ +||||+++|+++|||++||||+|.++++
T Consensus 850 ~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~ 929 (1001)
T 3haz_A 850 ARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIE 929 (1001)
T ss_dssp HHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHH
T ss_pred HHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHH
Confidence 0111110 122 2 5 3 4678999999999999999996 8999999999999999999999999999
Q ss_pred HHHHhcCcceEEEcCCCCC--CCCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 636 TFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 636 ~~~~~l~~G~V~iN~~~~~--~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++|+++|++.|+|+++..
T Consensus 930 ~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 930 AIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGP---KAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCC---CBTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCC---CCCCHHHHHHhceeeEEEECCc
Confidence 9999999999999997654 3567999999998852 3578999999999999998765
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=3.8e-69 Score=603.58 Aligned_cols=385 Identities=18% Similarity=0.227 Sum_probs=313.5
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
.+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++. .++.. .+....++
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI----WQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCH----HHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999988765432 22221 13445556
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005078 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (715)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~ 447 (715)
.+.+++...+..|.... +.+...+++++|+|||++|+|| ||. +.++++++||++||+||+|||+.||+|+..++
T Consensus 80 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 66666543333343211 2345567889999999999998 796 45799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecC-CcceEEEcCCCCHH
Q 005078 448 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 524 (715)
Q Consensus 448 ~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElG-Gk~p~iV~~dADl~ 524 (715)
+++.+++.++ +|+|++|+|++ +.++++.|..||+||+|+||||+.+.+..+ ...||+ +|+| ||+|+||++|||||
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9998888899 99999999996 556777788899999999999999877663 347999 6777 99999999999999
Q ss_pred HHHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHHHH-------hc--C-------CeEecCc---c----cc
Q 005078 525 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQ-------HE--G-------VGLFGGP---R----AS 580 (715)
Q Consensus 525 ~A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~-------~~--~-------~~~~g~~---~----~~ 580 (715)
.|++.+++|+|+|+| +|+|++|+|||++|| |+|+++|+++.. +. | ..+ |.. + ..
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-gp~i~~~~~~~i~ 311 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASEQSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSM-NPAIVGKSVQHIA 311 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSCCEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCB-CGGGTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhhcccccCCCCcc-CcccCHHHHHHHH
Confidence 999999999999987 999999999999999 799999987641 11 0 000 000 0 00
Q ss_pred ccc----c------------CCCCCCccccccCceEEEEEeCCHHHHH----HHHHhcCCCceeEEEecCHHHHHHHHHh
Q 005078 581 KLL----Q------------IPETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFLCQ 640 (715)
Q Consensus 581 ~~~----p------------v~~~~~~~eE~FGPVl~v~~~~~~deAi----~~aN~~~~GL~a~i~t~d~~~~~~~~~~ 640 (715)
.++ + ++.+..+.||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|+++
T Consensus 312 ~~~~~a~~~ga~vl~gg~~~v~~~~~~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~~~ 391 (464)
T 3k9d_A 312 NLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALK 391 (464)
T ss_dssp HHTTCCCCTTCCEEEEECCCCSTTCGGGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred HHhhhhhcCCCEEEEcCCCCCCCCCcccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHh
Confidence 000 1 1222335699999999999999999997 7999999999999999999999999999
Q ss_pred cCcceEEEcCCCC---------CCCCCccCCcccccccccccccccccccccceEEEEEEEcCcccc
Q 005078 641 VDSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVV 698 (715)
Q Consensus 641 l~~G~V~iN~~~~---------~~~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~~~~ 698 (715)
+++|+|+||+++. ..+.+|||+|.+ |.+ ..+|..|+++|++.|+|.++..+..
T Consensus 392 l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~-G~g----~~~~~~~~~~~~~~k~v~~~~~~~~ 453 (464)
T 3k9d_A 392 KPVSRLLVNTPGALGGIGATTNLVPALTLGCGAV-GGS----SSSDNIGPENLFNIRRIATGVLELE 453 (464)
T ss_dssp SSEEEEEESSCHHHHHTTSSSSSCCCSCBBCTGG-GTC----SCCSBCCGGGSEEEEEEEECCCCHH
T ss_pred CCEeEEEEECCccccccccCCCCCccccccCcCC-CCC----cCCCCCCHHHheEEEEEEecCCchh
Confidence 9999999999875 457889998653 443 2358899999999999999876644
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=7.1e-67 Score=583.34 Aligned_cols=383 Identities=16% Similarity=0.211 Sum_probs=296.4
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005078 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (715)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (715)
.+|+++++++|++||+.|+++|+++|.++|++++++|++|+++|++++.+|.+++. .++.. .++.++++
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~----~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGI----VEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHH-------HHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887765432 22221 13455566
Q ss_pred HHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005078 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (715)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vvlKps~~tp~t~~~l~ 447 (715)
.+..+....+..|.... +.+...+++++|+|||++|+|| ||. +.+++++|||++||+||+|||+.||+|+..++
T Consensus 75 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~~ 150 (452)
T 3my7_A 75 FIYNKYKDEQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAA 150 (452)
T ss_dssp HHHHHHTTCCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHHhhhccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHH
Confidence 66333322223333211 1233457889999999999998 786 56799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-cchhhHhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHH
Q 005078 448 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 525 (715)
Q Consensus 448 ~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~ 525 (715)
+++++++.++ +|+|++|+|++ +.++++.|..||+||+|+||||+.+++..+ ...||+++|||||+|+||++|||+|.
T Consensus 151 ~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~~ 229 (452)
T 3my7_A 151 KLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIKR 229 (452)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHHH
T ss_pred HHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHHH
Confidence 9999988889 99999999996 557788888899999999999999988753 35799999999999999999999999
Q ss_pred HHHHHHhhccCCCc-cccccceEEEcCcccCchhHHHHHHH------------HHhc-------CCeEecCccc-----c
Q 005078 526 AKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA-----S 580 (715)
Q Consensus 526 A~~~iv~~~f~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~------------~~~~-------~~~~~g~~~~-----~ 580 (715)
|++.+++|+|+|+| +|+|++|+|||++|| |+|+++|+++ ++++ +..++|+... .
T Consensus 230 Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~~~ 308 (452)
T 3my7_A 230 AVASVLMSKTFDNGVVCASEQAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEMA 308 (452)
T ss_dssp HHHHHHHGGGGGGGCCTTCEEEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccCCCcEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHHhC
Confidence 99999999999987 999999999999999 7999999763 2111 2223343321 1
Q ss_pred cc-c-c-C------------CCCCCccccccCceEEEEEeCCHHHHHHHHHhcC----CCceeEEEecCHHHHHH---HH
Q 005078 581 KL-L-Q-I------------PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET---FL 638 (715)
Q Consensus 581 ~~-~-p-v------------~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~----~GL~a~i~t~d~~~~~~---~~ 638 (715)
++ + | + ++++++ +|+||||++|++|+|+||||+++|++. |||++||||+|.+++++ |+
T Consensus 309 G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~a 387 (452)
T 3my7_A 309 GVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFG 387 (452)
T ss_dssp TCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHHH
T ss_pred CceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHHH
Confidence 22 2 2 2 134555 589999999999999999999999985 99999999999887777 99
Q ss_pred HhcCcceEEEcCCCCCC-----------CCCccCCcccccccccccccccccccccceEEEEEEEcCc
Q 005078 639 CQVDSAAVFHNASTRFC-----------DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 695 (715)
Q Consensus 639 ~~l~~G~V~iN~~~~~~-----------~~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~~~~ 695 (715)
+++++|+|+||+++.+. +.+++|.|.+.|.+. .+..+.++|.++|+|.++..
T Consensus 388 ~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~-----~~nv~~~~l~n~~~v~~~~~ 450 (452)
T 3my7_A 388 DKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSI-----SENVGPKHLINKKTVAKRAE 450 (452)
T ss_dssp HHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC-
T ss_pred HhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCcc-----CCCCChhHeeeeeEEEeecC
Confidence 99999999999987552 223445555544442 36689999999999987654
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=1.8e-38 Score=342.41 Aligned_cols=255 Identities=39% Similarity=0.561 Sum_probs=186.4
Q ss_pred hcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccc
Q 005078 11 VKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 90 (715)
Q Consensus 11 ~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l 90 (715)
|++.+++|||||||+++++++.++.+.+.+++++|+.+++.|+++||||||+++.|...++... .+..+.
T Consensus 1 ~~~~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~~----~~~~l~------ 70 (367)
T 2j5v_A 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPE----LPATIA------ 70 (367)
T ss_dssp --CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCC----CCSSHH------
T ss_pred CCCCCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCCC----CCCCHH------
Confidence 3457899999999999987777889999999999999999999999999999998876554321 111222
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCC
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (715)
..+++.++||..++.+|...|..+|+++.|++++.+|+.+...+.+..+.|++||+.|+|||+++||.+... +
T Consensus 71 ~~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~-------e 143 (367)
T 2j5v_A 71 SKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATA-------E 143 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCG-------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecc-------c
Confidence 234667899998999999999999999999999988888766665555899999999999999998877652 2
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeec--cchhhHHhcCCCCCcccCChHHHHHHHH
Q 005078 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIR--AKHQAEITFGDKSRVGRGGMTAKVNAAY 247 (715)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~--~e~~~~~~~g~~~~~~~ggM~~Kl~aa~ 247 (715)
..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|+++++ +|+.+++.. +.+.+++|||.+|+++|.
T Consensus 144 l~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~-~~s~~gtGgM~~Kl~Aa~ 222 (367)
T 2j5v_A 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGD-SVSGLGTGGMSTKLQAAD 222 (367)
T ss_dssp GCCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------------------------CHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhc-cCCCcCcCccHHHHHHHH
Confidence 3359999999999999999999999999999999995 999999999999 888775442 234578999999999999
Q ss_pred HHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 248 CAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 248 ~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
.|+++|++++|+|++.++.+.++++|+..||++.+.
T Consensus 223 ~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 223 VACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred HHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 999999999999999999999999999999999876
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=1.2e-36 Score=313.89 Aligned_cols=244 Identities=31% Similarity=0.522 Sum_probs=200.7
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchHHH
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 94 (715)
|++||||||++++ ++++++.+.+.+++++|+.+++. +++|||||||++.+...++... .. .-..++
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~~~------~~------~~~~~~ 67 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLDIDR------KN------LINKQV 67 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCCCCS------SS------HHHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhCCcc------CC------chHHHH
Confidence 7899999999999 65567888899999999999888 9999999999776654433211 01 112458
Q ss_pred HHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCceee
Q 005078 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFW 174 (715)
Q Consensus 95 ~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~~~ 174 (715)
+.+++|..++.++...|..+|+++.++..+++++.+..++.+..+.|+.+|+.|+|||+++||.+... +..++
T Consensus 68 l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~-------~~~~~ 140 (251)
T 2ako_A 68 LAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIE-------EIVFG 140 (251)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCH-------HHHBT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeec-------ceeec
Confidence 88999988888999999999999989888888886655444445899999999999999987755431 12349
Q ss_pred cchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeecc--chhhHHhcCCCCCcccCChHHHHHHHHHHHH
Q 005078 175 DNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRA--KHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 251 (715)
Q Consensus 175 ~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~--e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~ 251 (715)
|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++ |+.+++. ++.+.+++|||.+|+++|..|++
T Consensus 141 ~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~-~~~~~~~~ggm~~k~~aa~~a~~ 219 (251)
T 2ako_A 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI-KTGSEHGTGGIVTKLKAAKFLLE 219 (251)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhc-ccCCCCccCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999995 8999999999998 8877544 22235889999999999999999
Q ss_pred cCCcEEEEeCCCcchHHH--HHcCCcceeEE
Q 005078 252 AGIPVVITSGFAMDSIIK--VLEGKRVGTLF 280 (715)
Q Consensus 252 ~gv~v~I~~g~~~~~l~~--~~tg~~iGT~i 280 (715)
+|++++|+||+.|+.+.+ +++|+..||++
T Consensus 220 ~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i 250 (251)
T 2ako_A 220 HNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250 (251)
T ss_dssp TTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred CCCeEEEEeCCChhhhhhhHHhcCCCCceEe
Confidence 999999999999999998 99998899986
No 55
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=1.6e-33 Score=295.00 Aligned_cols=255 Identities=15% Similarity=0.164 Sum_probs=189.8
Q ss_pred hhhhhcc-cceEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhcccCCCccc
Q 005078 7 SRAFVKD-VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLAD 82 (715)
Q Consensus 7 ~~~~~~~-~k~~VIKiGGs~l~~~~--~~~~~~~l~~l~~~I~~l~~~G~-~vviVhGgg~~i~~~~l~~~~~~~~~~~~ 82 (715)
+++.+.+ .+++||||||+++++++ +.++.+.+.+++++|+.+.+.|+ ++|||||||+++...+ ... +....+.
T Consensus 15 ~~~~~~~~~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l-~~~-~~~~~~~- 91 (286)
T 3d40_A 15 VPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAI-RDH-DSTHAFS- 91 (286)
T ss_dssp CCCSTTSCCSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCT-
T ss_pred chhhhccCCCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHc-CCCcccc-
Confidence 4555555 46899999999999875 36888899999999999999998 6999999999777643 222 2211111
Q ss_pred ccCccccchHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceecc
Q 005078 83 LQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTR 162 (715)
Q Consensus 83 ~~~~~~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~ 162 (715)
+.+.++|+..++..+...|..+|+++.++...+.++...+.+.++.+.|+++|+.|+|||++| |.+...
T Consensus 92 ----------~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~g-d~~~~~ 160 (286)
T 3d40_A 92 ----------LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAG-DALFDE 160 (286)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEEC-EEEEBT
T ss_pred ----------hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcC-CeEEcC
Confidence 145677887788889999999999887775544433100122234568999999999999997 554431
Q ss_pred CCCCCCCCce-eecchhHHHHHHhh-cCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHh--cCCCCCcccCC
Q 005078 163 KAPYEDSSGI-FWDNDSLAGLLALE-LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGG 238 (715)
Q Consensus 163 ~~~~~~~~~~-~~~~D~~A~~lA~~-L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~--~g~~~~~~~gg 238 (715)
++.. ++|+|++|+.+|.+ |+||+|+|+|||||||++||+ ++++|++|+++|+++++. .++.+.+++||
T Consensus 161 ------~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tgg 232 (286)
T 3d40_A 161 ------HGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGA 232 (286)
T ss_dssp ------TSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CH
T ss_pred ------CCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCc
Confidence 2332 49999999999999 999999999999999999997 899999999999876543 12223578999
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcC-----Ccc-eeEEecC
Q 005078 239 MTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG-----KRV-GTLFHRD 283 (715)
Q Consensus 239 M~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg-----~~i-GT~i~~~ 283 (715)
|.+|+++|..|+++|++++|+||+.|+.+.+++++ +.+ ||++..+
T Consensus 233 M~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 233 MHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 99999999999999999999999999999999998 776 9998765
No 56
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3e-33 Score=290.46 Aligned_cols=254 Identities=17% Similarity=0.217 Sum_probs=172.8
Q ss_pred cceEEEEeCCcccccCCC--c-ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccc
Q 005078 14 VKRLVVKVGTAVVTRSDG--R-LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 90 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~--~-~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l 90 (715)
+|++|||+||+++++++. . ++.+.+.+++++|+.++ +.++|||||||+++...+ ++ .++.++|...... ..
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~-~~-~gi~~~~~~~~g~--~~ 75 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFA-GE-YRIGSEIENEEDL--RR 75 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHH-HH-HTTTSCCCSHHHH--HH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHH-HH-cCCCcccccCccc--cc
Confidence 689999999999998763 4 78888999999999885 589999999999766543 33 3444444311000 00
Q ss_pred hHHHHHHcch--HHHHHHHHHHhhcCCCCcceEEecccccCchh-HHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCC
Q 005078 91 DGKACAAVGQ--SSLMALYDTLFSQLDVTSSQLLVTDSDFRDED-FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (715)
Q Consensus 91 ~~~~~~a~G~--~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~-~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (715)
...++....+ ..+...+...|...|+++.++...+..+...+ ....+.+.|+++|++|+|||++| |....
T Consensus 76 ~~~G~rvT~~~~~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~-~~~~~------ 148 (269)
T 3ll9_A 76 RRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYG-DVVLD------ 148 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEEC-EEEEB------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECC-CEEec------
Confidence 0001111100 12334566888888888765422211111001 11223578999999999999996 44433
Q ss_pred CC--Ccee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHH
Q 005078 168 DS--SGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV 243 (715)
Q Consensus 168 ~~--~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl 243 (715)
.. ++.+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+++. ++.+.+++|||.+|+
T Consensus 149 ~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~-~~~~~~~tgGM~~Kl 227 (269)
T 3ll9_A 149 SDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-GTLNTDVTGGMVGKI 227 (269)
T ss_dssp SCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHHH
T ss_pred ccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhc-ccCCCcCcCCcHHHH
Confidence 13 4444 9999999999999999999999999999999995 89999999999999976554 222457899999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcc-eeEEe
Q 005078 244 NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 281 (715)
Q Consensus 244 ~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~i-GT~i~ 281 (715)
++|+.++++|++++|+|++.++.+.++++|+.+ ||++.
T Consensus 228 ~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 228 RELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999999999999999998 99875
No 57
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=1.2e-32 Score=290.87 Aligned_cols=243 Identities=19% Similarity=0.229 Sum_probs=183.5
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCccccchH
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDG 92 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~~~l~~ 92 (715)
+|++||||||+++++++ .+..++++|+.+++.|+++|||||||++++..+.. .+..+.|.+ ++.++.. ..
T Consensus 25 ~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~--~~~~~~~~~g~R~t~~~-~l 95 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRR--LGIEGDFKGGFRVTTPE-VL 95 (299)
T ss_dssp TCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHH--HTCCCCCSSSSCCBCHH-HH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH--cCCcccccCCcccCCHH-HH
Confidence 58999999999999753 57899999999999999999999999999876532 233323322 2222110 11
Q ss_pred HHHH--HcchHHHHHHHHHHhhcCCCCcceEEecccc-----------------cCchhH-HhHHHHHHHHHHhCCCeEE
Q 005078 93 KACA--AVGQSSLMALYDTLFSQLDVTSSQLLVTDSD-----------------FRDEDF-RKQLYDTVQSLLDLRVIPI 152 (715)
Q Consensus 93 ~~~~--a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d-----------------~~~~~~-~~~~~~~i~~ll~~g~iPV 152 (715)
+.+. +.|+ +...+...|...|+++..+...+.+ ++..+. ...+.+.|+++|+.|+|||
T Consensus 96 ~~~~~~~~G~--l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpV 173 (299)
T 2ap9_A 96 DVARMVLFGQ--VGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPV 173 (299)
T ss_dssp HHHHHHHHHT--HHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhH--HHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEE
Confidence 2222 3454 3445788999998876332111110 000111 1135789999999999999
Q ss_pred EeCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCC
Q 005078 153 FNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDK 231 (715)
Q Consensus 153 v~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~ 231 (715)
+++ +.. +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++.
T Consensus 174 v~~---v~~-----~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~---- 239 (299)
T 2ap9_A 174 VST---LAP-----DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP---- 239 (299)
T ss_dssp EES---EEE-----CTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG----
T ss_pred ECC---eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH----
Confidence 986 222 1244456 7999999999999999999999999999999996 468999999999988754
Q ss_pred CCcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 232 SRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 232 ~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
+++|||.||+++|..++++|++ ++|+||+.|+.+ .++++++..||++.++
T Consensus 240 --~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 240 --TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp --GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred --hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 6699999999999999999999 999999999997 8999999999999876
No 58
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-32 Score=290.73 Aligned_cols=244 Identities=25% Similarity=0.334 Sum_probs=185.0
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCcc-ccch
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~-~~l~ 91 (715)
+|++||||||+++++++ .+.+++++|+.+++.|+++|||||||++++..+. .. +..++|.+ ++.++ ..+.
T Consensus 36 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~-~~-~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGPDINRYLK-QL-NIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp TCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH-HT-TCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHH-Hc-CCCccccCCcccCCHHHHH
Confidence 68999999999999743 5789999999999999999999999999987643 22 33323322 11111 1111
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcc-------eEEeccc-----ccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCc
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDA 158 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~-------~~~~~~~-----d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~ 158 (715)
...+.+.|+... .+...|...|+++. +++.+.. |+...+. ...+.+.|+++|++|+|||+++
T Consensus 108 ~~~~~~~G~~n~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~--- 182 (298)
T 2rd5_A 108 IVSMVLVGKVNK--NLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIAS--- 182 (298)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEES---
T ss_pred HHHHHHhchHHH--HHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcC---
Confidence 112233566543 46678888887643 3333322 3332111 1134678999999999999986
Q ss_pred eeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccC
Q 005078 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (715)
Q Consensus 159 v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~g 237 (715)
+.. +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.+++..+ +++|
T Consensus 183 v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~g 251 (298)
T 2rd5_A 183 VAA-----DDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAG 251 (298)
T ss_dssp EEE-----CTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCT
T ss_pred eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCC
Confidence 222 1244556 7999999999999999999999999999999996 4 8999999999999877654 6799
Q ss_pred ChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEe
Q 005078 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFH 281 (715)
Q Consensus 238 gM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~ 281 (715)
||.+|+++|..++++|++ ++|+||+.++.+ .++++++..||.+.
T Consensus 252 GM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~ 297 (298)
T 2rd5_A 252 GMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMIT 297 (298)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEE
T ss_pred chHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEe
Confidence 999999999999999998 999999999999 89999999999885
No 59
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=2e-32 Score=290.76 Aligned_cols=255 Identities=17% Similarity=0.134 Sum_probs=188.5
Q ss_pred hcccceEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCc
Q 005078 11 VKDVKRLVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (715)
Q Consensus 11 ~~~~k~~VIKiGGs~l~~~~~--~--~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~ 86 (715)
|++++++|||+||+++++++. + ++.+.+.+++++|+.|++.|+++|||||||+++++.+. .. +..+.|.+ ..
T Consensus 1 ~~~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~-~~-~~~~~~t~--~~ 76 (316)
T 2e9y_A 1 MDSGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSE-AF-EALPPERP--RQ 76 (316)
T ss_dssp ---CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHH-HH-HTSCTTSC--CC
T ss_pred CCCCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHH-Hc-CCCCCCCC--HH
Confidence 566789999999999995542 2 23368999999999999999999999999999997543 22 33333311 11
Q ss_pred cccchHHHHHHcchH--HHHHHHHHHhhcCCCC------cceEEecccc------------cCc----------hhH---
Q 005078 87 QNELDGKACAAVGQS--SLMALYDTLFSQLDVT------SSQLLVTDSD------------FRD----------EDF--- 133 (715)
Q Consensus 87 ~~~l~~~~~~a~G~~--~~~~l~~~~l~~~g~~------~~~~~~~~~d------------~~~----------~~~--- 133 (715)
.+....+.+.|+. .+...+...|.+.|++ .+|+.++..| +.+ .++
T Consensus 77 --~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~ 154 (316)
T 2e9y_A 77 --PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFK 154 (316)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeee
Confidence 1212233345555 3456788889899987 3466555333 100 000
Q ss_pred -----------------HhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCC----cee-ecchhHHHHHHhhcCCCE
Q 005078 134 -----------------RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS----GIF-WDNDSLAGLLALELKADL 191 (715)
Q Consensus 134 -----------------~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~----~~~-~~~D~~A~~lA~~L~A~~ 191 (715)
...+.+.|+++|++|+|||++|++.+... .+.++ ..+ +|+|++|+.+|.+|+||+
T Consensus 155 ~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~---~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~ 231 (316)
T 2e9y_A 155 RDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVV---ERPGGVLEPVEAVVDKDLASSLLATQLNADL 231 (316)
T ss_dssp ECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEE---ECTTSCEEECSCCCCHHHHHHHHHHHTTCSE
T ss_pred ccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCee---ECCCCCeecceeeeCHHHHHHHHHHHcCCCE
Confidence 01367899999999999999988765431 11133 112 699999999999999999
Q ss_pred EEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHH
Q 005078 192 LVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKV 270 (715)
Q Consensus 192 li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~ 270 (715)
|+|+|||||||+ ||.+|++++|++|+++|+.+++..+ .+.+|||.+|+++|+.++++|+ +++|+| ++.+.++
T Consensus 232 LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~ 304 (316)
T 2e9y_A 232 LVILTDVPGVAV-NYGREGERWLRRAAASELKKYLREG---HFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQV 304 (316)
T ss_dssp EEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHH
T ss_pred EEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHH
Confidence 999999999999 6778999999999999998877643 3678999999999999999999 599998 5668889
Q ss_pred HcCCcceeEEec
Q 005078 271 LEGKRVGTLFHR 282 (715)
Q Consensus 271 ~tg~~iGT~i~~ 282 (715)
+++ ..||++.+
T Consensus 305 l~g-~~GT~i~~ 315 (316)
T 2e9y_A 305 LSL-QAGTVVML 315 (316)
T ss_dssp HTT-SSSEEEEC
T ss_pred HcC-CCCeEEec
Confidence 998 78998864
No 60
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.98 E-value=7.4e-32 Score=286.66 Aligned_cols=246 Identities=19% Similarity=0.285 Sum_probs=186.8
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCcc-ccch
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~-~~l~ 91 (715)
+|++||||||++++++ +.+..++++|+.+++.|+++|||||||++++..+. . .++.+.|.+ ++.++ ..+.
T Consensus 49 ~k~iVIKlGGs~l~~~------~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~-~-~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQE------ELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLG-R-VGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TCEEEEEECTHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH-H-TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCc------hHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-H-cCCCccccCCcccCCHHHHH
Confidence 6789999999999974 35789999999999999999999999999987543 2 233333322 12111 1122
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcc-------eEEeccc----ccCchhHHh-HHHHHHHHHHhCCCeEEEeCCCce
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS----DFRDEDFRK-QLYDTVQSLLDLRVIPIFNENDAV 159 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~-------~~~~~~~----d~~~~~~~~-~~~~~i~~ll~~g~iPVv~g~d~v 159 (715)
-..+.+.|+... .+...|..+|+++. +++.+.. |+...+.+. .+.+.|+++|+.|+|||+++ +
T Consensus 121 ~~~~~~~G~in~--~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 195 (321)
T 2v5h_A 121 VVEMVLVGRVNK--DIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISS---V 195 (321)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEES---E
T ss_pred HHHHHHhChHHH--HHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeC---c
Confidence 222334566643 35567777776532 4444432 444332221 34678999999999999984 2
Q ss_pred eccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCC
Q 005078 160 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (715)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~gg 238 (715)
... ..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++..+ .++||
T Consensus 196 ~~~-----~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~g----~~~gG 264 (321)
T 2v5h_A 196 AAD-----ENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQG----IVGGG 264 (321)
T ss_dssp EEC-----TTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHTT----SSCTT
T ss_pred eEC-----CCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhCC----CCcCc
Confidence 221 244566 6999999999999999999999999999999996 58999999999998877653 67999
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 239 MTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 239 M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
|.||+++|..|+++|++ ++|+||+.++.+ .++++++..||++...
T Consensus 265 M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 265 MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99999999999999999 999999999998 8899998999999766
No 61
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.98 E-value=2.1e-31 Score=275.95 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=168.0
Q ss_pred hhhhhcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccC
Q 005078 7 SRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQK 85 (715)
Q Consensus 7 ~~~~~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~ 85 (715)
+|...+ .|++|||+||+++++. +.+++++|+.|++.|+++||||||+++++..+.. .+++++|.+ ++.
T Consensus 30 ~~~~~m-~k~iVIKiGGs~l~~~--------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~--lg~~~~~~~G~Rv 98 (279)
T 3l86_A 30 MGRGSM-KDIIVIKIGGVASQQL--------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEE--NQVPVKKINGLRV 98 (279)
T ss_dssp -----C-CCEEEEEECTTGGGSC--------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEEC
T ss_pred cccccC-CceEEEEEChHHHHhH--------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHH--cCCCCccCCCccc
Confidence 344333 3899999999999874 4789999999999999999999999999986532 244445543 222
Q ss_pred ccccchHHHHHHcchHHHH----HHHHHHhhcCCCCcceE------EecccccCchhHH-------hHHHHHHHHHHhCC
Q 005078 86 PQNELDGKACAAVGQSSLM----ALYDTLFSQLDVTSSQL------LVTDSDFRDEDFR-------KQLYDTVQSLLDLR 148 (715)
Q Consensus 86 ~~~~l~~~~~~a~G~~~~~----~l~~~~l~~~g~~~~~~------~~~~~d~~~~~~~-------~~~~~~i~~ll~~g 148 (715)
++ ++++..+ +..+. ..+...|..+|+++.++ +++..++ +...+ ..+.+.|+.+|+.|
T Consensus 99 td----~~~l~~v-~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~-~~~d~g~vG~i~~v~~~~i~~lL~~g 172 (279)
T 3l86_A 99 TS----KDDMVLV-SHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYL-DKDTYGYVGDVTHINKRVIEEFLENR 172 (279)
T ss_dssp BC----HHHHHHH-HHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEES-CHHHHBSBEEEEEECHHHHHHHHHTT
T ss_pred Cc----HHHHHHH-HHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeecc-CccccCcccccchhhHHHHHHHHhCC
Confidence 21 2233333 33333 46778999999988877 5555433 21112 13578999999999
Q ss_pred CeEEEeCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHh
Q 005078 149 VIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT 227 (715)
Q Consensus 149 ~iPVv~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~ 227 (715)
+|||+++ +.. +..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ +++|++|+++|+++++.
T Consensus 173 ~IPVi~~---v~~-----~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d------~~~I~~i~~~e~~~l~~ 238 (279)
T 3l86_A 173 QIPILAS---LGY-----SKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLEN------GAVLEKITSHQVQEKID 238 (279)
T ss_dssp CEEEEES---EEE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEET------TEECCEEEGGGSHHHHH
T ss_pred cEEEECC---cEE-----CCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCccccC------CEehhhccHHHHHHHHh
Confidence 9999987 222 1244556 7999999999999999999999999999953 78999999999998876
Q ss_pred cCCCCCcccCChHHHHHHHHHHHHcCCc-EEEEeCCC
Q 005078 228 FGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFA 263 (715)
Q Consensus 228 ~g~~~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~ 263 (715)
.+ +++|||.||+++|+.|+++|++ ++|+|++.
T Consensus 239 ~~----~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~ 271 (279)
T 3l86_A 239 TA----VITAGMIPKIESAAKTVAAGVGQVLIGDNLL 271 (279)
T ss_dssp TT----SSCTTHHHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred CC----CCcCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 43 6899999999999999999999 99999764
No 62
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.98 E-value=4.6e-32 Score=278.56 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=167.8
Q ss_pred ccceEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCCeEE-EEeCChhHhhHHHhhhhcccCCCcccccCcccc
Q 005078 13 DVKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGFEII-LVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNE 89 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~--~~~~~~~l~~l~~~I~~l~~~G~~vv-iVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~ 89 (715)
++|++|||+||+++++++ ..++.+.+.+++++|+. |+++| ||||||+++.. .++. .++.+.|.+.+...+.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~-~~~~-~gi~~~~~~~d~~gl~ 75 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHI-KAME-FGLPGPKNPRSSIGYS 75 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHH-HHHH-HTCSEECCHHHHHHHH
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHH-HHHH-hCCCcCCCccccccHH
Confidence 368999999999999864 25777889999999875 99999 99999776444 4333 2444444321111111
Q ss_pred chHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCC
Q 005078 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 169 (715)
Q Consensus 90 l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~ 169 (715)
...+. +..+...+...|...|+++.++.-. ++...+.+ +.+.|+++|++|+|||++| |++... +
T Consensus 76 ~t~~~-----~~~ln~~~v~~l~~~G~~a~~l~~~--~~~~~g~v--~~~~i~~ll~~g~ipVi~~-~~~~~~------~ 139 (249)
T 3ll5_A 76 IVHRD-----MENLDLMVIDAMIEMGMRPISVPIS--ALRYDGRF--DYTPLIRYIDAGFVPVSYG-DVYIKD------E 139 (249)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHTTCCEEECCGG--GSCBSSSB--CCHHHHHHHHTTCEEEEEC-EEEEEE------T
T ss_pred HHHHH-----HHHHHHHHHHHHHHCCCcEEEEcHH--HcccccEE--cHHHHHHHHHCCCEEEECC-CEEEcC------C
Confidence 11111 1244445557788889887765222 22222223 4688999999999999996 555431 2
Q ss_pred Cce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCC-CCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHH
Q 005078 170 SGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAY 247 (715)
Q Consensus 170 ~~~-~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~ 247 (715)
+.. ++|+|++|+.+|.+|+||+|+|+|||||||++|| .+|++++|++++ +++... ..+.+++|||.||+++|+
T Consensus 140 ~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~----~~~~~~tGgM~~Kl~aA~ 214 (249)
T 3ll5_A 140 HSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFD----RVQNDVTGGIGKKFESMV 214 (249)
T ss_dssp TEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHH
T ss_pred CceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcc----cCCCeeECCHHHHHHHHH
Confidence 222 4999999999999999999999999999999999 499999999994 333222 123478999999999999
Q ss_pred HH-HHcCCcEEEEeCCCcchHHHHHcCCcc-eeEE
Q 005078 248 CA-ACAGIPVVITSGFAMDSIIKVLEGKRV-GTLF 280 (715)
Q Consensus 248 ~a-~~~gv~v~I~~g~~~~~l~~~~tg~~i-GT~i 280 (715)
.+ +++|++++|+||+.++.+.. +.|+.+ ||.+
T Consensus 215 ~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 215 KMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVI 248 (249)
T ss_dssp HHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEE
T ss_pred HHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEe
Confidence 99 89999999999999999988 888888 9986
No 63
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.4e-31 Score=277.29 Aligned_cols=238 Identities=18% Similarity=0.266 Sum_probs=173.7
Q ss_pred hhhhhhhcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccccc
Q 005078 5 DSSRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQ 84 (715)
Q Consensus 5 ~~~~~~~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~ 84 (715)
++++.....+|++||||||+++++++..++.+.+.+++++|++++++|+++|||||||. +.+.+.....+ ++
T Consensus 41 ~~~~~~~~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~-i~~g~~~~~~g-------l~ 112 (281)
T 3nwy_A 41 AASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQLG-------ME 112 (281)
T ss_dssp ------CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTT-C---CCTTTTT-------CC
T ss_pred CcccccCCcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChh-HhhhHHHHhcC-------CC
Confidence 34666667789999999999999876678889999999999999999999999998754 43322111111 11
Q ss_pred CccccchHHHHHHcchHHHHHHHHHHhhcCCCCcc-eEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccC
Q 005078 85 KPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSS-QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (715)
Q Consensus 85 ~~~~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~-~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~ 163 (715)
..+... ...+.+.++ ..+|...|..+|+++. +..++.+++.+ .+ .+.+.+ ++|++|+|||++|+
T Consensus 113 ~~~~d~-~g~lat~~n---~~~l~~~L~~~Gi~a~~~~~~~~~~~~~--~~-~~~~~l-~lL~~g~IpVv~g~------- 177 (281)
T 3nwy_A 113 RTRSDY-MGMLGTVMN---SLALQDFLEKEGIVTRVQTAITMGQVAE--PY-LPLRAV-RHLEKGRVVIFGAG------- 177 (281)
T ss_dssp HHHHHH-HHHHHHHHH---HHHHHHHHHHTTCCEEEEESSCCGGGSE--EC-CHHHHH-HHHHTTCEEEEEST-------
T ss_pred ccchhH-HHHHHHHHH---HHHHHHHHHHcCCCEEEEeccccccccc--cc-chHHHH-HHHHcCCeEEEECC-------
Confidence 111000 011222222 2267799999999873 44455445432 22 234556 78999999999861
Q ss_pred CCCCCCCceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHH
Q 005078 164 APYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAK 242 (715)
Q Consensus 164 ~~~~~~~~~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~K 242 (715)
.+..++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+ .|+|.+|
T Consensus 178 -----~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-----------~g~~v~k 241 (281)
T 3nwy_A 178 -----MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-----------RGLRVAD 241 (281)
T ss_dssp -----TSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-----------TTCCSSC
T ss_pred -----CCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-----------cCCCcHH
Confidence 233469999999999999999999999999999999994 99999999999988642 2567889
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEe
Q 005078 243 VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (715)
Q Consensus 243 l~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (715)
++++..|.++|++++|+|++.++.+.++++|+.+||++.
T Consensus 242 ~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 242 ATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999999999999874
No 64
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.97 E-value=1.2e-30 Score=275.58 Aligned_cols=243 Identities=20% Similarity=0.279 Sum_probs=184.3
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCcc-ccch
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~-~~l~ 91 (715)
++++||||||+++++++ .+..++++|+.|++.|+++|||||||++++..+.. .++.+.|.+ ++.++ ..+.
T Consensus 26 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR--LSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp TCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH--cCCCccccCCeecCCHHHHH
Confidence 58999999999999753 47899999999999999999999999999876532 233333332 22111 1122
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcce-------EEeccc----------------ccCchhH-HhHHHHHHHHHHhC
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQ-------LLVTDS----------------DFRDEDF-RKQLYDTVQSLLDL 147 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~~-------~~~~~~----------------d~~~~~~-~~~~~~~i~~ll~~ 147 (715)
-..+.+.|+. ...+...|..+|+++.. ++.+.. |+...+. ...+.+.|+.+|+.
T Consensus 98 ~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~ 175 (300)
T 2buf_A 98 VVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKG 175 (300)
T ss_dssp HHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHC
Confidence 2223345665 34667888888876432 222210 2322222 12347899999999
Q ss_pred CCeEEEeCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHH
Q 005078 148 RVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI 226 (715)
Q Consensus 148 g~iPVv~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~ 226 (715)
|+|||+++ +.. +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++
T Consensus 176 g~IpVi~~---v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~-----~a~~i~~i~~~e~~~~~ 242 (300)
T 2buf_A 176 DFIPVIAP---IGV-----GSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNELI 242 (300)
T ss_dssp TCEEEEEE---EEE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHHHH
T ss_pred CCEEEEcC---cee-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC-----CCcChhhCCHHHHHHHH
Confidence 99999984 222 1244556 6999999999999999999999999999997 28999999999998877
Q ss_pred hcCCCCCcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 227 TFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 227 ~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
..+ .++|||.||+++|..++++|++ ++|+||+.++.+ .++++++..||.+...
T Consensus 243 ~~~----~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 243 ADG----TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HTT----CSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HcC----CCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 643 6799999999999999999999 999999999998 8899998899999765
No 65
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.97 E-value=4.3e-31 Score=276.91 Aligned_cols=242 Identities=21% Similarity=0.304 Sum_probs=183.0
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCcc-ccch
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~-~~l~ 91 (715)
+|++||||||++++++ +.+.+++++|+.+++.|+++|||||||++++..+.. . +..+.|.+ ++.++ ..+.
T Consensus 21 ~~~iViKlGGs~l~~~------~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~-~-~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQE------NAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKD-L-GIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp TCEEEEEECSHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHH-H-TCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCh------hHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH-c-CCCccccCCcccCCHHHHH
Confidence 6899999999999974 357899999999999999999999999999876432 2 33323322 22211 1121
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcc-------eEEeccc-----ccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCc
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDA 158 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~-------~~~~~~~-----d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~ 158 (715)
-..+.+.|+.. ..+...|...|+++. +++.+.. |++..+. ...+.+.|+++|++|+|||+++
T Consensus 93 ~~~~~~~G~~~--~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~--- 167 (282)
T 2bty_A 93 IVEMVLVGKIN--KEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAP--- 167 (282)
T ss_dssp HHHHHHHHTHH--HHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEES---
T ss_pred HHHHHHhhHHH--HHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECC---
Confidence 11223356653 346788888887743 3333321 3433222 1234789999999999999986
Q ss_pred eeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccC
Q 005078 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (715)
Q Consensus 159 v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~g 237 (715)
+.. +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++|+++|+.+++..+ .++|
T Consensus 168 v~~-----~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~~g----~~~g 232 (282)
T 2bty_A 168 VGI-----GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIRDG----TVTG 232 (282)
T ss_dssp EEE-----CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHTTT----CSCT
T ss_pred Ccc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHHcC----CCCC
Confidence 222 1234456 7999999999999999999999999999997 3 899999999998876543 6799
Q ss_pred ChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 238 gM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
||.+|+++|..|+++|++ ++|+||+.++.+ .++++++..||.+.++
T Consensus 233 GM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp THHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred cHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 999999999999999998 999999999998 8899999999999765
No 66
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.97 E-value=5.6e-31 Score=278.11 Aligned_cols=261 Identities=17% Similarity=0.202 Sum_probs=176.1
Q ss_pred hhhhhcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhc-ccCCCcccccC
Q 005078 7 SRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRK-LVNSSLADLQK 85 (715)
Q Consensus 7 ~~~~~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~-~~~~~~~~~~~ 85 (715)
+++--|.||++|||+||+++.+.. ..+.+.++.++++|+.|.+.|+++|||||||||+|........ .....+ ...
T Consensus 17 ~~~d~K~MkRIVIklGGnAL~~~~-~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~--~~~ 93 (332)
T 4axs_A 17 IDDDDKHMSRIVIALGGNALGDNP-SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEK--TAL 93 (332)
T ss_dssp ---------CEEEEECGGGGCSSH-HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSC--CCC
T ss_pred ccccccCcceEEEEEChhhcCCCh-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCC--CCC
Confidence 555566678999999999998642 2234567899999999999999999999999999976432211 111111 111
Q ss_pred ccccchHHHHHHcchH----HHHHHHHHHhhcCCCCc------ceEEecccc--cCc-----------------------
Q 005078 86 PQNELDGKACAAVGQS----SLMALYDTLFSQLDVTS------SQLLVTDSD--FRD----------------------- 130 (715)
Q Consensus 86 ~~~~l~~~~~~a~G~~----~~~~l~~~~l~~~g~~~------~~~~~~~~d--~~~----------------------- 130 (715)
+.+ +.+.+.+|. .+...+.+.|..+|+.. .|++++..| |.+
T Consensus 94 --~~l--~~~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~ 169 (332)
T 4axs_A 94 --VPF--AEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSV 169 (332)
T ss_dssp --CCH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSC
T ss_pred --chh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCE
Confidence 111 122222222 12334556676666542 244444322 110
Q ss_pred ------hhHH----------hHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCEEE
Q 005078 131 ------EDFR----------KQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLV 193 (715)
Q Consensus 131 ------~~~~----------~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~A~~li 193 (715)
.+++ ..+.+.|+.|++.|+|||..|.+.+.....+....|.. ++|+|++|+.+|.+|+||+|+
T Consensus 170 ~~~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~Li 249 (332)
T 4axs_A 170 IVEDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFV 249 (332)
T ss_dssp CC--------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEE
T ss_pred EEEccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEE
Confidence 0010 13568999999999999987766554432222212222 399999999999999999999
Q ss_pred EeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCc--EEEEeCCCcchHHHHH
Q 005078 194 LLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP--VVITSGFAMDSIIKVL 271 (715)
Q Consensus 194 ~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~--v~I~~g~~~~~l~~~~ 271 (715)
|+|||||||+++| +|++++|++++.+|+.+++..+ .+.+|||.||++||+.|++.|+. ++|.+ ++.+.+++
T Consensus 250 iLTdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~g---~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l 322 (332)
T 4axs_A 250 VLTAVDYVYVDFN-KPTQKALKTVDVKALNNFINQD---QFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDAL 322 (332)
T ss_dssp EECSCSSCEESTT-STTCEECSSCBHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHT
T ss_pred EEecCCceEcCCC-CcchhhcccCCHHHHHHHHHCC---CcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHH
Confidence 9999999999887 6889999999999999988764 46789999999999999998774 66654 56788888
Q ss_pred cCCcceeEEec
Q 005078 272 EGKRVGTLFHR 282 (715)
Q Consensus 272 tg~~iGT~i~~ 282 (715)
.|+ .||.+.+
T Consensus 323 ~g~-~GT~IvA 332 (332)
T 4axs_A 323 KGL-SGTKIIA 332 (332)
T ss_dssp TTS-SSEEEBC
T ss_pred CCC-CCcEEeC
Confidence 886 6998853
No 67
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.97 E-value=1.3e-30 Score=269.86 Aligned_cols=245 Identities=18% Similarity=0.228 Sum_probs=182.0
Q ss_pred cceEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCC------CeEEEEeCChhHhhHHHhhhhcccCCC----cc
Q 005078 14 VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQG------FEIILVSSGAVGVGRQRLRYRKLVNSS----LA 81 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~--~~~~~~~l~~l~~~I~~l~~~G------~~vviVhGgg~~i~~~~l~~~~~~~~~----~~ 81 (715)
.+++|||+||+++++++ ..++.+.+.+++++|+.+++.| .++|||||||+++.. .++.+ ++.+. |.
T Consensus 6 ~m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~-~~~~l-gi~~~~~~~~~ 83 (266)
T 3k4o_A 6 SMLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHP-VAKKY-LKIEDGKKIFI 83 (266)
T ss_dssp -CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHH-HHGGG-EEECSSSEEEC
T ss_pred ceEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHH-HHHHc-CCCcccCcccc
Confidence 45799999999999864 3788899999999999999888 999999999886444 33333 33323 22
Q ss_pred cccCccccchHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceec
Q 005078 82 DLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 161 (715)
Q Consensus 82 ~~~~~~~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~ 161 (715)
... +.+. ....++. .+...+...|..+|+++.++...+..+...+ ...+.+.|+.+|+.|+|||+++ |++..
T Consensus 84 ~~~---~G~r-~T~~a~~--~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g-~~v~~~~i~~lL~~g~ipVi~~-~~~~~ 155 (266)
T 3k4o_A 84 NME---KGFW-EIQRAMR--RFNNIIIDTLQSYDIPAVSIQPSSFVVFGDK-LIFDTSAIKEMLKRNLVPVIHG-DIVID 155 (266)
T ss_dssp CHH---HHHH-HHHHHHH--HHHHHHHHHHHTTTCCEEEECGGGTCEESSS-CBCCCHHHHHHHHTTCEEEEEC-EEEEE
T ss_pred ccc---Ccee-HHHHHHH--HHHHHHHHHHHHCCCcEEEeeHHHcCcccCc-eEecHHHHHHHHHCCCEEEEeC-CEEEc
Confidence 100 0000 0011121 3555677889999998877632221111111 1223689999999999999995 54443
Q ss_pred cCCCCCCCCce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhc--CCCCCcccCC
Q 005078 162 RKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITF--GDKSRVGRGG 238 (715)
Q Consensus 162 ~~~~~~~~~~~-~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~--g~~~~~~~gg 238 (715)
. .++. ++|+|++|+++|.+|+||+|+|+||||||| .|| ++|++++.+|+++++.. ++.+.+++||
T Consensus 156 ~------~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~tGG 223 (266)
T 3k4o_A 156 D------KNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDVTGG 223 (266)
T ss_dssp S------SSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCCSSH
T ss_pred C------CCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcccCC
Confidence 1 3333 499999999999999999999999999999 665 69999999887765532 4455689999
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 239 MTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 239 M~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
|.+|+++|+.+++ +++|+||+.++.+.++++|+.+||++.+.
T Consensus 224 M~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 224 MKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999999999988 99999999999999999999999999765
No 68
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.97 E-value=1.3e-30 Score=276.50 Aligned_cols=252 Identities=20% Similarity=0.241 Sum_probs=182.7
Q ss_pred ccceEEEEeCCcccccCCC----cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccc
Q 005078 13 DVKRLVVKVGTAVVTRSDG----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~----~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~ 88 (715)
|+|++||||||++++++++ .++.+.+.+++++|+.|++.|+++|||||||++++..+.+.... +.|..++...+
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~--~~~~~~~~~~l 78 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAG--QATYGIPAQPM 78 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--HHHHCCCCCCH
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCc--cccCCCChhHH
Confidence 4689999999999996543 24557899999999999999999999999999999876543221 11200111111
Q ss_pred cchHHHHHHc--chH--HHHHHHHHHhhcCCCCc------ceEEecccc--cCch-------------h-----------
Q 005078 89 ELDGKACAAV--GQS--SLMALYDTLFSQLDVTS------SQLLVTDSD--FRDE-------------D----------- 132 (715)
Q Consensus 89 ~l~~~~~~a~--G~~--~~~~l~~~~l~~~g~~~------~~~~~~~~d--~~~~-------------~----------- 132 (715)
+.+.+. |+. .+..++...|.+.|+++ +|+.++..| |..+ .
T Consensus 79 ----~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~ 154 (314)
T 1e19_A 79 ----DVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVK 154 (314)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred ----HHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccc
Confidence 123333 332 34567788898999863 345444222 1110 0
Q ss_pred ----------------HHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCC---Cce-eecchhHHHHHHhhcCCCEE
Q 005078 133 ----------------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS---SGI-FWDNDSLAGLLALELKADLL 192 (715)
Q Consensus 133 ----------------~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~---~~~-~~~~D~~A~~lA~~L~A~~l 192 (715)
....+.+.|+++|++|+|||++|+..+... .+.+ +.. ++|+|++|+.+|.+|+||+|
T Consensus 155 g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~---~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~l 231 (314)
T 1e19_A 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVI---LEDGEIKGVEAVIDKDLAGEKLAEEVNADIF 231 (314)
T ss_dssp ECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEE---EETTEEEECCCCCCHHHHHHHHHHHTTCSEE
T ss_pred ccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeE---ECCCCcceeEEeccHHHHHHHHHHHcCCCEE
Confidence 011357899999999999999875444321 1112 111 49999999999999999999
Q ss_pred EEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHc-CCcEEEEeCCCcchHHHHH
Q 005078 193 VLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVL 271 (715)
Q Consensus 193 i~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~-gv~v~I~~g~~~~~l~~~~ 271 (715)
+|+|||||||++|| +|++++|++|+++|+.+++..+ .+.+|||.||+++|..+++. +++++|+|+ +.+.+++
T Consensus 232 i~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~ 304 (314)
T 1e19_A 232 MILTDVNGAALYYG-TEKEQWLREVKVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEAL 304 (314)
T ss_dssp EEEESSSSCEETTT-STTCEECCEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHH
T ss_pred EEeccCCEEECCCC-CCCCeECCEECHHHHHHHHhCC---CcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHH
Confidence 99999999999999 7999999999999998877643 46789999999999997775 556999984 5688888
Q ss_pred cCCcceeEEe
Q 005078 272 EGKRVGTLFH 281 (715)
Q Consensus 272 tg~~iGT~i~ 281 (715)
++ ..||++.
T Consensus 305 ~g-~~GT~i~ 313 (314)
T 1e19_A 305 EG-KTGTQVL 313 (314)
T ss_dssp TT-SSSEEEE
T ss_pred cC-CCCeEEc
Confidence 88 4899875
No 69
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=1.2e-30 Score=271.41 Aligned_cols=235 Identities=22% Similarity=0.212 Sum_probs=168.4
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccC---CCccc-c--cCcccc
Q 005078 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVN---SSLAD-L--QKPQNE 89 (715)
Q Consensus 16 ~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~---~~~~~-~--~~~~~~ 89 (715)
++||||||++++ . +.+++++|+.+++.|+++|||||||++++..+. +. ++. +.|.+ + +.++..
T Consensus 1 ~iViKlGGs~l~--~-------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~-~~-~~~~~~~~~~~g~~~rvt~~~ 69 (269)
T 2egx_A 1 MIVVKVGGAEGI--N-------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVAE-AL-GHPPRFLTHPGGQVSRLTDRK 69 (269)
T ss_dssp CEEEEECCSTTC--C-------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHH-HT-TCCCCC-------CCCCCCHH
T ss_pred CEEEEECHHHHH--H-------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHHH-Hc-CCccccccccCCccCcCCCHH
Confidence 589999999997 3 789999999999999999999999999976542 22 222 11211 1 111100
Q ss_pred chHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccc----------------------cCchh-HHhHHHHHHHHHHh
Q 005078 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSD----------------------FRDED-FRKQLYDTVQSLLD 146 (715)
Q Consensus 90 l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d----------------------~~~~~-~~~~~~~~i~~ll~ 146 (715)
..+.+.++++-.+...+...|..+|+++..+...+.. ++..+ +...+.+.|+.+|+
T Consensus 70 -~l~~~~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~ 148 (269)
T 2egx_A 70 -TLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQ 148 (269)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHH
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHH
Confidence 1123344433334567789999899876533111111 11000 01234789999999
Q ss_pred CCCeEEEeCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchh--
Q 005078 147 LRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ-- 223 (715)
Q Consensus 147 ~g~iPVv~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~-- 223 (715)
+|.|||+++ ..+. ..+..+ +|+|++|+.+|.+|+||+|+|+|||||||+ || .|++++|++|+++|+.
T Consensus 149 ~g~ipVi~~-v~~~-------~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~ 218 (269)
T 2egx_A 149 AGYLPVLTP-PALS-------YENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDP 218 (269)
T ss_dssp TTCEEEEEC-CEEE-------TTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCH
T ss_pred CCCEEEEcC-cEEC-------CCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHH
Confidence 999999985 2211 134444 999999999999999999999999999999 88 6899999999999998
Q ss_pred hHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHcCCcceeEE
Q 005078 224 AEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLF 280 (715)
Q Consensus 224 ~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~~tg~~iGT~i 280 (715)
++ . .+++|||.+|+++|..|+++|+ +++|+|++.++.+...+.| .||++
T Consensus 219 ~l-~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 219 EY-L-----ALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp HH-H-----TTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred Hh-c-----CCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 75 2 3779999999999999999999 6999999999999888877 78876
No 70
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.97 E-value=1.8e-30 Score=268.03 Aligned_cols=232 Identities=17% Similarity=0.250 Sum_probs=169.3
Q ss_pred hhcccceEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccc
Q 005078 10 FVKDVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (715)
Q Consensus 10 ~~~~~k~~VIKiGGs~l~~~~~-~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~ 88 (715)
.|+++|++||||||++++++++ .++.+.+.+++++|+.++ .|+++|||||||..+....+... ++...+.+
T Consensus 20 ~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~-g~~~~~~~------ 91 (256)
T 2va1_A 20 HMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKEL-DMDRNLAD------ 91 (256)
T ss_dssp ---CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHT-TCCHHHHH------
T ss_pred hhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHc-CCCCCchh------
Confidence 4666799999999999997642 577888999999999999 89999999998776544322211 22111111
Q ss_pred cchHHHHHHcchHHHHHHHHHHhhcCCCCcceE-EecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCC
Q 005078 89 ELDGKACAAVGQSSLMALYDTLFSQLDVTSSQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (715)
Q Consensus 89 ~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~-~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (715)
...++....+.. ++...|...|+++..+ .++.+++.+. + .+.+. .++|+.|+|||++|.
T Consensus 92 --~~~~l~~~~n~~---l~~~~l~~~Gi~a~~~~~~t~~~~~~~--~-~~~~~-~~lL~~g~IpVi~~~----------- 151 (256)
T 2va1_A 92 --NMGMMATIINGL---ALENALNHLNVNTIVLSAIKCDKLVHE--S-SANNI-KKAIEKEQVMIFVAG----------- 151 (256)
T ss_dssp --HHHHHHHHHHHH---HHHHHHHTTTCCEEEEESSCCTTTCEE--C-CHHHH-HHHHHTTCEEEEEST-----------
T ss_pred --HHHHHHHHHHHH---HHHHHHHHcCCCeEEEeeeecccccch--h-hHHHH-HHHHhCCcEEEEECC-----------
Confidence 011233333322 3368888999887433 3444444332 2 22344 689999999999861
Q ss_pred CCCceeecchhHHHHHHhhcCCCEEEEecc-CCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHH
Q 005078 168 DSSGIFWDNDSLAGLLALELKADLLVLLSD-VEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNA 245 (715)
Q Consensus 168 ~~~~~~~~~D~~A~~lA~~L~A~~li~lTD-VdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~a 245 (715)
.+..++++|++|+.+|.+|+||+|+|+|| |||||++||+ +|++++|++|+++|+.++ + .|+| |+++
T Consensus 152 -~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m--k~~a 219 (256)
T 2va1_A 152 -TGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM--DATA 219 (256)
T ss_dssp -TSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--CHHH
T ss_pred -CCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--cHHH
Confidence 23346899999999999999999999999 9999999995 899999999999998764 1 2788 9999
Q ss_pred HHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEe
Q 005078 246 AYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (715)
Q Consensus 246 a~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (715)
|..|.++|++++|+|++.|+.+.++++|+..||++.
T Consensus 220 a~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 220 LALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp HHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred HHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 999999999999999999999999999999999875
No 71
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.97 E-value=1.4e-30 Score=276.26 Aligned_cols=253 Identities=19% Similarity=0.205 Sum_probs=178.0
Q ss_pred ccceEEEEeCCcccccCCCccc----HHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccc
Q 005078 13 DVKRLVVKVGTAVVTRSDGRLA----LGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~~~~----~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~ 88 (715)
|+|++|||+||+++++ . ..+ .+.+.+++++|+.|++.|+++|||||||++++..+.. . +..++|. .+...
T Consensus 1 ~~k~iVIKlGGs~l~~-~-~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~-~-~~~~~~~-~~~~~- 74 (310)
T 2we5_A 1 MGKKMVVALGGNAILS-N-DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ-Q-QAADSEK-NPAMP- 74 (310)
T ss_dssp -CCEEEEECCGGGGCC-S-SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH-H-HHTCSSS-SCCCC-
T ss_pred CCcEEEEEEChHHhcC-C-CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHH-c-CCCCCCC-CCHHH-
Confidence 3579999999999997 2 233 2678999999999999999999999999999975432 2 2222331 11111
Q ss_pred cchHHHHHHcchHHH--HHHHHHHhhcCCCCc----------------------ceE--Eecccc--------c---Cc-
Q 005078 89 ELDGKACAAVGQSSL--MALYDTLFSQLDVTS----------------------SQL--LVTDSD--------F---RD- 130 (715)
Q Consensus 89 ~l~~~~~~a~G~~~~--~~l~~~~l~~~g~~~----------------------~~~--~~~~~d--------~---~~- 130 (715)
+.-..+...|+.+. ...+...|...|++. ..+ +++..+ + .+
T Consensus 75 -l~~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~ 153 (310)
T 2we5_A 75 -LDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDA 153 (310)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECT
T ss_pred -HHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccC
Confidence 11112233343322 122345565555431 001 112111 2 00
Q ss_pred -hh----------HHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCEEEEeccC
Q 005078 131 -ED----------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSDV 198 (715)
Q Consensus 131 -~~----------~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~A~~li~lTDV 198 (715)
.+ ...++.+.|+++|++|+|||++|++++...+.+ ..+.. ++|+|++|+.+|.+|+||+|+|+|||
T Consensus 154 ~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~--~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdV 231 (310)
T 2we5_A 154 GRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQE--LKGVEAVIDKDFASEKLAELVDADALVILTGV 231 (310)
T ss_dssp TSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTT--TEECCCCCCHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCC--CCCcEeecCHHHHHHHHHHHcCCCEEEEEeCc
Confidence 00 111467899999999999999987666542111 12222 39999999999999999999999999
Q ss_pred CccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCC--cEEEEeCCCcchHHHHHcCCcc
Q 005078 199 EGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKRV 276 (715)
Q Consensus 199 dGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv--~v~I~~g~~~~~l~~~~tg~~i 276 (715)
||||+ ||.+|++++|++++++|+.+++..+ ...+|||.||+++|+.++++|+ +++|++ ++.+.++++|+..
T Consensus 232 dGVy~-dp~~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~ 304 (310)
T 2we5_A 232 DYVCI-NYGKPDEKQLTNVTVAELEEYKQAG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIV 304 (310)
T ss_dssp SSCEE-STTSTTCEECCEEEHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCC
T ss_pred hHhhC-CCCCCCCeECCEEcHHHHHHHhhCC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCC
Confidence 99999 6778999999999999998877653 2556999999999999999999 699997 5668888899889
Q ss_pred eeEEe
Q 005078 277 GTLFH 281 (715)
Q Consensus 277 GT~i~ 281 (715)
||.+.
T Consensus 305 GT~i~ 309 (310)
T 2we5_A 305 GTVVT 309 (310)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 99874
No 72
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=1.4e-30 Score=264.37 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=165.4
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhcccCCCcccccCccccchH
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDG 92 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~--~l~~~~~~~~~~~~~~~~~~~l~~ 92 (715)
+++||||||++++++ +.+.+.+++++|+.+++.|+++|||||||+..... .++.. +.. .. .+
T Consensus 1 ~~iViK~GGs~l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~-g~~-------~~--~~-- 64 (226)
T 2j4j_A 1 MNIILKISGKFFDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREI-GIG-------EA--YL-- 64 (226)
T ss_dssp CEEEEEECTHHHHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHT-TCC-------HH--HH--
T ss_pred CeEEEEeccccccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHh-CCC-------cc--cH--
Confidence 479999999999954 25678999999999999999999999987755542 12211 111 00 01
Q ss_pred HHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce
Q 005078 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (715)
Q Consensus 93 ~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~ 172 (715)
+.+.+++......++...|..+|+.. +.. +.+.|+++|+.|.|||++| . ..
T Consensus 65 ~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~-------~~~~i~~ll~~g~ipVi~g----g----------~~ 115 (226)
T 2j4j_A 65 DLLGIWASRLNAYLVMFSLQDLAYMH--------VPQ-------SLEEFIQDWSHGKVVVTGG----F----------QP 115 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSBCSC--------CCS-------SHHHHHHHHTTSSBEEECC----C----------ST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--------CcC-------CHHHHHHHHHCCCEEEEcC----C----------CC
Confidence 12233333333334457887887633 111 2456889999999999986 0 11
Q ss_pred eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCCh--HHHHHHHHHH
Q 005078 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM--TAKVNAAYCA 249 (715)
Q Consensus 173 ~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM--~~Kl~aa~~a 249 (715)
++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+++..+ ...+||| .+|++++..+
T Consensus 116 ~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~---~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 116 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS---QSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC---CCCcCCccccchHHHHHHH
Confidence 48899999999999999999999999999999995 8999999999999998776541 2568999 9999999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCcceeEEec
Q 005078 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (715)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (715)
.++|++++|+|++.|+.+.++++|+..||.+.+
T Consensus 193 ~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred HHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999999999999864
No 73
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=9.9e-30 Score=260.34 Aligned_cols=230 Identities=16% Similarity=0.226 Sum_probs=171.5
Q ss_pred ccceEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccch
Q 005078 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~-~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~ 91 (715)
+++++|||||||+++++++ .++.+.+.+++++|+.+++.|+++|||||||..+....+... +.....
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~-~~~~~~----------- 73 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAG-SMDRAT----------- 73 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHT-TSCHHH-----------
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHc-CCCCcc-----------
Confidence 3689999999999997643 577888999999999999999999999998765433212111 111000
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcceEE-ecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCC
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLL-VTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~-~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (715)
.+.+..++......++...|...|+++..+. .+.+++.+. + .+.+.+ ++|+.|.|||+++. .+
T Consensus 74 ~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~--~-~~~~~~-~ll~~g~ipVv~g~------------~g 137 (239)
T 1ybd_A 74 ADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAET--Y-ARPKAI-QYLEEGKVVIFAAG------------TG 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEE--C-CHHHHH-HHHHTTCEEEEEST------------TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccccccc--h-hHHHHH-HHHhCCcEEEEECC------------cc
Confidence 0112223332223334688888898764332 222222211 1 124556 78999999999752 22
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHH
Q 005078 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (715)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (715)
..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ + .++| |++++..|
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~a~~~a 206 (239)
T 1ybd_A 138 NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---N------LKVM--DATAFALC 206 (239)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---T------CCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---c------cccc--CHHHHHHH
Confidence 2358999999999999999999999999999999995 999999999999998752 2 4677 67899999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCcceeEEe
Q 005078 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (715)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (715)
.++|++++|+|++.|+.+.++++|+..||++.
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 99999999999999999999999999999885
No 74
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.97 E-value=9.8e-30 Score=259.62 Aligned_cols=230 Identities=17% Similarity=0.246 Sum_probs=169.2
Q ss_pred cceEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchH
Q 005078 14 VKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 92 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~-~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~ 92 (715)
+|++|||+|||+++++. +.++.+.+++++++|+.+++.|+++|||||||..+.... ....+ . ++..+.....
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~-~~~~G----~--~~~~~~~~~~ 79 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVS-AAQGG----I--IRRTSGDYMG 79 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC--------------C--CCHHHHHHHH
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhH-HHhcC----C--CCCCCHHHHH
Confidence 68999999999999743 368888999999999999999999999999976543221 11111 0 1111100000
Q ss_pred HHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce
Q 005078 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (715)
Q Consensus 93 ~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~ 172 (715)
.+.+.. -..++...|..+|+++ +.++..|+...... .+.+.+.++|++|.|||++|. .+..
T Consensus 80 -~la~~~---n~~l~~~~l~~~G~~a--v~lt~~d~~~~~~~-~~~~~i~~lL~~g~ipVi~~~------------~g~~ 140 (240)
T 4a7w_A 80 -MLATVI---NAVAMQEALEHIGLDT--RVQSAIEIKEICES-YIYRKAIRHLEKGRVVIFGAG------------TGNP 140 (240)
T ss_dssp -HHHHHH---HHHHHHHHHHHTTCCE--EEEESSCCTTTSEE-CCHHHHHHHHHTTCEEEEEST------------TSCT
T ss_pred -HHHHHH---HHHHHHHHHHHCCCCE--EEecHHHcCcccCc-CcHHHHHHHHHCCCEEEEeCC------------CCCC
Confidence 111222 2235668899999887 44554444321111 235677899999999999861 1223
Q ss_pred eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHH
Q 005078 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 251 (715)
Q Consensus 173 ~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~ 251 (715)
++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+ . ..++| |++++..|.+
T Consensus 141 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~------g~~~m--~~~a~~~a~~ 209 (240)
T 4a7w_A 141 FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALI---G------DIEVM--DDTAISLAKD 209 (240)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHH---S------SCCSS--CHHHHHHHHH
T ss_pred CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHh---c------Ccccc--HHHHHHHHHH
Confidence 58999999999999999999999999999999995 99999999999998764 1 25678 5799999999
Q ss_pred cCCcEEEEeCCCcchHHHHHcC-CcceeEE
Q 005078 252 AGIPVVITSGFAMDSIIKVLEG-KRVGTLF 280 (715)
Q Consensus 252 ~gv~v~I~~g~~~~~l~~~~tg-~~iGT~i 280 (715)
+|++++|+|++.|+.+...+.| +.+||.+
T Consensus 210 ~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 210 NKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp TTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999776655 4689986
No 75
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=1.2e-29 Score=263.11 Aligned_cols=258 Identities=21% Similarity=0.279 Sum_probs=181.7
Q ss_pred hcccceEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCc
Q 005078 11 VKDVKRLVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (715)
Q Consensus 11 ~~~~k~~VIKiGGs~l~~~~~--~--~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~ 86 (715)
|.+.|++||++||+++..+.. + .+.++++..++.|+.+.+.|+++||+||+|||+|...+...... . ...
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~----~--~~~ 75 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA----G--VSP 75 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT----S--SSC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc----c--cCC
Confidence 566789999999999975322 2 24567899999999999999999999999999998665432111 0 123
Q ss_pred cccchHHHHHHcchHHHH--HHHHHHhhcCCCCc------ceEEecccc--cCch-------------------------
Q 005078 87 QNELDGKACAAVGQSSLM--ALYDTLFSQLDVTS------SQLLVTDSD--FRDE------------------------- 131 (715)
Q Consensus 87 ~~~l~~~~~~a~G~~~~~--~l~~~~l~~~g~~~------~~~~~~~~d--~~~~------------------------- 131 (715)
.+.|..-.+...|..+.+ ..+.+.|..+|+.. .|+.+...| |.++
T Consensus 76 ~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 76 EMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------
T ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeE
Confidence 345555556666666543 35566777777642 132221111 2210
Q ss_pred ------hHHh----------HHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCEEEE
Q 005078 132 ------DFRK----------QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVL 194 (715)
Q Consensus 132 ------~~~~----------~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~A~~li~ 194 (715)
++++ .+.+.|+.||++|+|||++|+..+....-+.+..|.. ++|+|++|+.+|.+|+||+|+|
T Consensus 156 ~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIi 235 (317)
T 3kzf_A 156 REDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235 (317)
T ss_dssp ------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEE
T ss_pred eecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEE
Confidence 0110 3468999999999998777555543211001111122 3999999999999999999999
Q ss_pred eccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHcC
Q 005078 195 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEG 273 (715)
Q Consensus 195 lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~~tg 273 (715)
+|||||||+ ||++|++++|++++++|+++++.. +.+.+|||.+|+++|+.+++.|+ +++|+|+ +.+.++++|
T Consensus 236 LTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~~---g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G 308 (317)
T 3kzf_A 236 LTDVLNACI-NYKKPDERKLEEIKLSEILALEKD---GHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG 308 (317)
T ss_dssp CCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHTT---TSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTT
T ss_pred ecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHhc---CCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCC
Confidence 999999999 787899999999999999987764 24678999999999999988665 5999995 567888888
Q ss_pred CcceeEEec
Q 005078 274 KRVGTLFHR 282 (715)
Q Consensus 274 ~~iGT~i~~ 282 (715)
+ .||++.+
T Consensus 309 ~-~GT~I~~ 316 (317)
T 3kzf_A 309 K-CGTRIIK 316 (317)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEec
Confidence 7 7998865
No 76
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=5.9e-30 Score=266.15 Aligned_cols=231 Identities=16% Similarity=0.221 Sum_probs=177.7
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchHHH
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 94 (715)
+++||||||+++++++ .+.+.+++++|+.+++. +++|||||||+ +++.+.+ . +...++ ....+...+
T Consensus 37 ~~iVIKlGGs~l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~-~-~~~~g~-----~~~~~~~~~ 103 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGT-RARHLYS-I-AAGLGL-----PAGVLAQLG 103 (270)
T ss_dssp TEEEEEECTTTTGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCH-HHHHHHH-H-HHHTTC-----CHHHHHHHH
T ss_pred CeEEEEechHHhCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChH-HHHHHHH-H-HHhcCC-----ChHHHHHHH
Confidence 5999999999999753 46789999999999876 89999999999 5554322 1 111111 112345568
Q ss_pred HHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCc-ee
Q 005078 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG-IF 173 (715)
Q Consensus 95 ~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~-~~ 173 (715)
+.++|+..++ +...|..+|++ .++..|+ +.++++|+.|.|||++|++++....... ..+. .+
T Consensus 104 ~~a~G~~~l~--~~~~l~~~G~~----~vt~~d~----------~~i~~lL~~g~ipVi~g~~g~~~~~~~~-~~g~~~~ 166 (270)
T 2ogx_B 104 SSVADQNAAM--LGQLLAKHGIP----VVGGAGL----------SAVPLSLAEVNAVVFSGMPPYKLWMRPA-AEGVIPP 166 (270)
T ss_dssp HHHHHHHHHH--HHHHHGGGTCC----BCCSSTT----------CHHHHHCTTCCEEEEECSCTTGGGCCCC-SSSSSCS
T ss_pred HHHHHHHHHH--HHHHHHhcCCc----eecHhhH----------HHHHHHHhCCCEEEEeCCcccccccccc-ccccCCC
Confidence 8889988764 36778778875 3444443 2478999999999999976554321100 0122 24
Q ss_pred ecchhHHHHHHhhcCCCEEEEeccCCccccCCC-CCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHc
Q 005078 174 WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA 252 (715)
Q Consensus 174 ~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP-~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~ 252 (715)
+|+|++|+.+|.+|+||+|+|+|||||||++|| .+|++++|++++++|+.++...++ ...|||.+|+++|. .
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~---~~~ggm~~kl~aa~----~ 239 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS---ILEFPVLDLLQSAQ----H 239 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCT---TSCHHHHHHHHHCS----S
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCC---cccHHHHHHHHHhh----c
Confidence 999999999999999999999999999999999 499999999999999887654431 34589999999985 4
Q ss_pred CCcEEEEeCCCcchHHHHHcCCcceeEEec
Q 005078 253 GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (715)
Q Consensus 253 gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (715)
+++++|+|++.++.+.++++|+..||++.+
T Consensus 240 ~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 240 VREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp CCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 569999999999999999999999999864
No 77
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.97 E-value=1.5e-29 Score=260.75 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=173.4
Q ss_pred cceEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHh-hHHHhhhhcccCCCcccccCccccch
Q 005078 14 VKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGV-GRQRLRYRKLVNSSLADLQKPQNELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~-~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i-~~~~l~~~~~~~~~~~~~~~~~~~l~ 91 (715)
++++|||||||++++++ ..++.+.+.+++++|+.+++.|+++|||||||+.+ ++. +... ++...+.+
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~l-g~~~~~~~--------- 75 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AADA-GMDRVQAD--------- 75 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHH-TCCHHHHH---------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-HHHc-CCCCCchH---------
Confidence 58999999999999743 25778889999999999999999999999987644 332 2211 22111110
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCcceEEe-cccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCC
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~-~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (715)
.+..++......++...|.+.|+++..+.. +..++.+. + .+.+. +++|+.|+|||++|. .+
T Consensus 76 --~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~~~--~-~~~~~-~~lL~~g~IpVi~~~------------~g 137 (252)
T 1z9d_A 76 --YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEP--Y-IRGRA-LRHLEKNRIVVFGAG------------IG 137 (252)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBEE--C-CHHHH-HHHHHTTCEEEEEST------------TS
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCc--c-hHHHH-HHHHhCCCEEEEeCC------------cC
Confidence 111222222223356888889987654422 22223221 2 22344 789999999999861 12
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEec-cCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHH
Q 005078 171 GIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (715)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~A~~li~lT-DVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (715)
..++|+|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.+ . ..++| |++++..
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~------~~~~m--k~~aa~~ 206 (252)
T 1z9d_A 138 SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---R------GLKIM--DATASTL 206 (252)
T ss_dssp CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---T------TCCCS--CHHHHHH
T ss_pred CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---c------ccccc--CHHHHHH
Confidence 23599999999999999999999999 99999999995 99999999999998864 2 24788 8899999
Q ss_pred HHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 249 a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
|.++|++++|+|++.++.+.++++|+..||++.+.
T Consensus 207 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 207 SMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp HHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 99999999999999999999999999999999775
No 78
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.97 E-value=1.4e-29 Score=258.90 Aligned_cols=231 Identities=18% Similarity=0.223 Sum_probs=169.0
Q ss_pred ccceEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHh-hHHHhhhhcccCCCcccccCccccc
Q 005078 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGV-GRQRLRYRKLVNSSLADLQKPQNEL 90 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~-~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i-~~~~l~~~~~~~~~~~~~~~~~~~l 90 (715)
++|++|||+|||+++++++ .++.+.+.+++++|+.+++.|++++||||||... +.. +. ..+.. ... .
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~-~~-~~g~~-------~~~--~ 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAG-LA-ASGMD-------RVT--G 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTT-TS-CSSSC-------HHH--H
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH-HH-HcCCC-------CCC--H
Confidence 4789999999999998764 6888999999999999999999999999985522 221 11 11111 000 0
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCC
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (715)
....+. .+. .-..++...|.+.|+++..+...+-... .. ..+.+.+.++|++|+|||++|+ .+
T Consensus 77 d~~g~l-~t~-~N~~~l~~al~~~G~~a~~~~~~~~~~v-~~--~~~~~~~~~lL~~g~IpVv~~~------------~g 139 (243)
T 3ek6_A 77 DHMGML-ATV-INALAMQDALEKLGAKVRVMSAIKINDV-CE--DFIRRRAIRHLEKGRIAIFAAG------------TG 139 (243)
T ss_dssp HHHHHH-HHH-HHHHHHHHHHHHTTCCEEEEESSCBTTT-BE--ECCHHHHHHHHHTTCEEEEEST------------TS
T ss_pred HHHHHH-HHH-HHHHHHHHHHHHcCCCeEEechhhcCcc-cC--cCCHHHHHHHHHCCcEEEEECC------------CC
Confidence 000111 111 1112366788888876543211110000 00 0124567899999999999861 23
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHH
Q 005078 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (715)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (715)
..++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+ .+ .++| |++++..|
T Consensus 140 ~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g------~~~~--~~~a~~~a 208 (243)
T 3ek6_A 140 NPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---QG------LEVM--DTAAFALA 208 (243)
T ss_dssp STTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---HT------CCSS--CHHHHHHH
T ss_pred CCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---CC------chhH--HHHHHHHH
Confidence 3459999999999999999999999999999999995 99999999999998764 22 2344 78999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCcceeEEec
Q 005078 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (715)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~ 282 (715)
.++|++++|+|++.++.+.++++|+.+||++.+
T Consensus 209 ~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 209 RDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999999999864
No 79
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=1.9e-29 Score=259.26 Aligned_cols=231 Identities=20% Similarity=0.259 Sum_probs=168.2
Q ss_pred cceEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchH
Q 005078 14 VKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 92 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~-~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~ 92 (715)
++++|||||||++++++ ..++.+.+.+++++|+.+++.|+++|||||||..+....+... ++...+ .
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~-g~~~~~-----------~ 75 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKA-GMNRVV-----------G 75 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHT-TCCHHH-----------H
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHc-CCCCCc-----------H
Confidence 68999999999999743 2577888999999999999999999999998665433212111 111010 0
Q ss_pred HHHHHcchHHHHHHHHHHhhcCCCCcceEEe-cccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCc
Q 005078 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 171 (715)
Q Consensus 93 ~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~-~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~ 171 (715)
+.+.+++......++...|...|+++..+.. +..++.+. +. +.+ ++++|+.|.|||++|. .+.
T Consensus 76 d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~--~~-~~~-~~~ll~~g~ipVi~~~------------~g~ 139 (247)
T 2a1f_A 76 DHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDT--YN-WSE-AIKMLREKRVVIFSAG------------TGN 139 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEE--CC-HHH-HHHHHHTTCEEEEEST------------TSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccch--hh-HHH-HHHHHhCCCEEEEeCC------------cCC
Confidence 1222333333333456888889987654422 22222211 21 233 4789999999999861 122
Q ss_pred eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHH
Q 005078 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 250 (715)
Q Consensus 172 ~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~ 250 (715)
.++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ + .++| |++++..|.
T Consensus 140 ~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~aa~~a~ 208 (247)
T 2a1f_A 140 PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---E------LKVM--DLSAFTLAR 208 (247)
T ss_dssp SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---T------CCSS--CHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---C------cccc--CHHHHHHHH
Confidence 359999999999999999999999999999999995 899999999999988752 2 4677 678999999
Q ss_pred HcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 251 CAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 251 ~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
++|++++|+|++.|+.+.++++|+.+||++...
T Consensus 209 ~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 209 DHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp HHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred HcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 999999999999999999999999999998765
No 80
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=7.2e-30 Score=264.23 Aligned_cols=240 Identities=25% Similarity=0.300 Sum_probs=172.5
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhcccCCCcc-cccCcccc-c
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLA-DLQKPQNE-L 90 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~-~vviVhGgg~~i~~~~l~~~~~~~~~~~-~~~~~~~~-l 90 (715)
++++||||||++++++ +.+.+++++|+.+.+.|. ++|||||||+++++.+ +.. +..+.+. ++..++.. +
T Consensus 2 m~~~ViK~GGs~l~~~------~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll-~~~-g~~~~~~~glr~t~~~~l 73 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSE------EALERLFSALVNYRESHQRPLVIVHGGGCVVDELM-KGL-NLPVKKKNGLRVTPADQI 73 (258)
T ss_dssp CCCEEEEECGGGGGCH------HHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHH-HHH-TCCCCEETTEECBCHHHH
T ss_pred CccEEEEEChhHhCCh------HHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHH-HHc-CCCcceeCCEeeCCHHHH
Confidence 4689999999999974 358999999999987766 5899999999887754 222 2222221 12211100 0
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccC----------chh-HHhHHHHHHHHHHhCCCeEEEeCCCce
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFR----------DED-FRKQLYDTVQSLLDLRVIPIFNENDAV 159 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~----------~~~-~~~~~~~~i~~ll~~g~iPVv~g~d~v 159 (715)
........|... ..+-..|...|+++.++...+.++. ..+ .+..+.+.|+.+|++|.|||++|++ .
T Consensus 74 ~~~~~~l~~~~n--~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g-~ 150 (258)
T 1gs5_A 74 DIITGALAGTAN--KTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG-V 150 (258)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE-E
T ss_pred HHHHHHHhccch--HHHHHHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCc-C
Confidence 000011122211 1223456778887766533322211 111 1123467899999999999999842 2
Q ss_pred eccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCCCCcccCC
Q 005078 160 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (715)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~~~~~~gg 238 (715)
. ..+..+ +++|++|+.+|.+|+|| |+|+|||||||++| +++|++|+++|+.+++..+ .++||
T Consensus 151 ~-------~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~~----~~~gG 213 (258)
T 1gs5_A 151 T-------DEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQG----IITDG 213 (258)
T ss_dssp C-------TTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHTT----CSCTH
T ss_pred C-------CCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhcC----CCCCc
Confidence 1 134444 99999999999999999 99999999999985 6899999999999877643 67999
Q ss_pred hHHHHHHHHHHHH-cCCcEEEEeCCCcchHHHHHcCCcceeEEe
Q 005078 239 MTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (715)
Q Consensus 239 M~~Kl~aa~~a~~-~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (715)
|.+|+++|..+++ ++++++|+|++.|+.+.++++|+..||.+.
T Consensus 214 m~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 214 MIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 9999999999986 578899999999999999999999999875
No 81
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.96 E-value=6.5e-30 Score=262.02 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=162.6
Q ss_pred hhhcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhcccCCCcccccCc
Q 005078 9 AFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKP 86 (715)
Q Consensus 9 ~~~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~--~l~~~~~~~~~~~~~~~~ 86 (715)
.+.++.|++||||||+++++++ ++.+++.+++++|+.+++ |+++|||||||+.+... .+... + ++..
T Consensus 14 ~~~~~~k~iViKlGGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~-g-------l~~~ 82 (244)
T 2brx_A 14 VPRGSHMRIVFDIGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKF-N-------SSET 82 (244)
T ss_dssp -----CCEEEEEECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTT-T-------CCHH
T ss_pred hhhhcccEEEEEechhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHc-C-------CCcc
Confidence 3445578999999999999764 667889999999999999 99999999988755542 12111 1 1111
Q ss_pred cccchHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCC
Q 005078 87 QNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 166 (715)
Q Consensus 87 ~~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~ 166 (715)
. + +...+++...-..++...|..+|++. ++. +.+.+.++|+.|+|||++| +
T Consensus 83 ~--~--~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~-------~~~~i~~lL~~g~IpVi~g-------g--- 133 (244)
T 2brx_A 83 F--K--DFIGIQITRANAMLLIAALREKAYPV--------VVE-------DFWEAWKAVQLKKIPVMGG-------T--- 133 (244)
T ss_dssp H--H--HHHHHHHHHHHHHHHHHHHGGGBCSS--------CBC-------SHHHHHHHHHTTCBCEECC-------C---
T ss_pred c--H--HHHHHHHHHHHHHHHHHHHHHcCCCC--------CcC-------CHHHHHHHHhCCCEEEEcC-------C---
Confidence 0 0 11122222222223446787777532 111 2356789999999999986 1
Q ss_pred CCCCceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHH
Q 005078 167 EDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNA 245 (715)
Q Consensus 167 ~~~~~~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~a 245 (715)
..++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+|+|.+|..+
T Consensus 134 ----~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~ 206 (244)
T 2brx_A 134 ----HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPL 206 (244)
T ss_dssp ----STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHH
T ss_pred ----CCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHH
Confidence 1246899999999999999999999999999999995 8999999999999998876641 1457888888777
Q ss_pred HHHHHH-cCCcEEEEeCCCcchHHHHHcCCcceeEEe
Q 005078 246 AYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (715)
Q Consensus 246 a~~a~~-~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~ 281 (715)
|..+++ .+++++|+||+.++.+.++++|+..||++.
T Consensus 207 A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 207 AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp HHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred HHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 777665 677899999999999999999999999875
No 82
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.96 E-value=2e-29 Score=264.17 Aligned_cols=235 Identities=17% Similarity=0.188 Sum_probs=171.1
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccC---ccccc
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQK---PQNEL 90 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~---~~~~l 90 (715)
+++|||+||++++++ +.+++++|+.++..|.++|||||||+++++.+. ..++++.|.+ ++. .+|..
T Consensus 49 ~~iViK~GGsv~~~~--------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~~~~G~RvTd~~~l~v 118 (307)
T 3zzh_A 49 QFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLE--AQGIEPDYIDGIRITDEHTMAV 118 (307)
T ss_dssp CCEEEEECHHHHHHS--------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHH--HTTCCCCEETTEECBCHHHHHH
T ss_pred CEEEEEEChHHhhch--------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH--HcCCCccccCCeecCCHHHHHH
Confidence 789999999988763 689999999999999999999999999998643 2345555543 222 22332
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEE---eccc-----ccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCceec
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVST 161 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~---~~~~-----d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~ 161 (715)
..++ +|+. ...+...|...|+++..+. ++.. |++..+. ...+++.|+.+|++|+|||++| +++.
T Consensus 119 v~m~---~~~v--n~~lv~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~-~g~~- 191 (307)
T 3zzh_A 119 VRKC---FLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET- 191 (307)
T ss_dssp HHHH---HHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECC-CEEC-
T ss_pred HHHH---HHHH--HHHHHHHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeC-CeEC-
Confidence 2222 3322 2233466667777765441 1211 2221111 2245789999999999999987 3332
Q ss_pred cCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccc-hhhHHhcCCCCCcccCCh
Q 005078 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGGM 239 (715)
Q Consensus 162 ~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e-~~~~~~~g~~~~~~~ggM 239 (715)
..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++++++| +++++.. ..++|||
T Consensus 192 ------~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~----~~~tGGM 257 (307)
T 3zzh_A 192 ------ASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYGT 257 (307)
T ss_dssp ------TTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTS----TTSCHHH
T ss_pred ------CCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhC----CCCCCcH
Confidence 134445 9999999999999999999999999999986 3689999999976 5566653 3679999
Q ss_pred HHHHHHHHHHHH---cCCcEEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 240 TAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 240 ~~Kl~aa~~a~~---~gv~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
.||++++..|++ .|.+++|++ ++.+ .++++++.+||.+...
T Consensus 258 ~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 258 KLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 999996555544 487799998 7776 7889999999999876
No 83
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.96 E-value=1.9e-28 Score=274.40 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=181.4
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCccc-cch
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQN-ELD 91 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~~-~l~ 91 (715)
+|++|||+||+++++++ +..++++|+.+++.|+++|||||||++++..+. ..+..++|.+ ++.++. .+.
T Consensus 43 ~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~--~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAA--AQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp TCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTT--TTTCCCCCGGGCCCBCHHHHH
T ss_pred CCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH--HCCCCCEeeCCeecCCHHHHH
Confidence 67999999999999754 789999999999999999999999999887542 2233333322 222111 111
Q ss_pred HHHHHHcchHHHHHHHHHHhhcCCCCc-----------ceEEecc-------cccCchhH-HhHHHHHHHHHHhCCCeEE
Q 005078 92 GKACAAVGQSSLMALYDTLFSQLDVTS-----------SQLLVTD-------SDFRDEDF-RKQLYDTVQSLLDLRVIPI 152 (715)
Q Consensus 92 ~~~~~a~G~~~~~~l~~~~l~~~g~~~-----------~~~~~~~-------~d~~~~~~-~~~~~~~i~~ll~~g~iPV 152 (715)
....++|+...+ +...|. .|+++ .+++... .|++..+. ...+.+.|+++|+.|+|||
T Consensus 114 -~~~~~~G~~~~~--l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 114 -QAQQFAGTVRSR--FEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp -HHHHHHHHHHHH--HHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred -HHHHHHhHHHHH--HHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 122223666553 355665 55554 1222111 02222111 1234789999999999999
Q ss_pred EeCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccchhhHHhcCCC
Q 005078 153 FNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDK 231 (715)
Q Consensus 153 v~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e~~~~~~~g~~ 231 (715)
+++++ . +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++..+
T Consensus 190 i~~~~---~-----~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~g-- 254 (456)
T 3d2m_A 190 MPPLG---H-----SYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEHA-- 254 (456)
T ss_dssp ECSEE---E-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTTC--
T ss_pred ECCcc---c-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhcc--
Confidence 98732 1 1134444 9999999999999999999999999999997 48999999999998876543
Q ss_pred CCcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCcceeEEecCCc-ccc--cHhhHHHHHHH
Q 005078 232 SRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRDAH-LWV--KQVGAREMAVA 299 (715)
Q Consensus 232 ~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tg~~iGT~i~~~~~-~~~--~~~~v~~av~~ 299 (715)
+|||.||+++|..|+++|++ ++|+|++.++.+ .++++++..||.+....- .+. .++|++...+-
T Consensus 255 ----~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~l 323 (456)
T 3d2m_A 255 ----ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAAL 323 (456)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHHH
Confidence 39999999999999999997 999999999998 778899899999976532 111 35666655443
No 84
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.96 E-value=9.8e-29 Score=257.47 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=168.9
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchHHHH
Q 005078 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKAC 95 (715)
Q Consensus 16 ~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (715)
++||||||| +++++ .+.+.+++++|+.++ .|+++|||||||++. +..++. ....+ +. ...+
T Consensus 41 ~iVIKiGGs-l~~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~-~~~~~~--~~~~g---l~-------~~~l 101 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRA-RHVFSV--GLDLG---LP-------VGSL 101 (276)
T ss_dssp EEEEEECHH-HHTTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHH-HHHHHH--HHHTT---CC-------HHHH
T ss_pred eEEEEEChh-hcCCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHH-HHHHhc--cCcCC---CC-------HHHH
Confidence 999999999 88753 456899999999998 799999999998654 444432 11111 11 1122
Q ss_pred HHcchH---HHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCc-
Q 005078 96 AAVGQS---SLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG- 171 (715)
Q Consensus 96 ~a~G~~---~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~- 171 (715)
..+++. .-..+.+.++...|++.. .+..+.+.|+.+|+.|+|||++||+.+...+ ..++
T Consensus 102 ~~v~~~~~~~n~~l~~~ll~~~g~~~v-------------~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e----~~G~~ 164 (276)
T 2ogx_A 102 APLAASEAGQNGHILAAMLASEGVSYV-------------EHPTVADQLAIHLSATRAVVGSAFPPYHHHE----FPGSR 164 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCBC-------------CHHHHHHHHHHHHHHSSEEEEESSCTTGGGC----CSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc-------------cccChHHHHHHHHhCCCEEEEcCCccccccc----ccCCc
Confidence 222222 111234455556665321 0123567899999999999999976654311 1122
Q ss_pred -eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC---CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHH
Q 005078 172 -IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS---EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAY 247 (715)
Q Consensus 172 -~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~---~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~ 247 (715)
.++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++. ++|||.+|+.++.
T Consensus 165 ~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~K~~~~~ 236 (276)
T 2ogx_A 165 IPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDRALLDVM 236 (276)
T ss_dssp SCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCHHHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHHHHHHHH
Confidence 249999999999999999999999999999999994 8999999999999887643 3799999999888
Q ss_pred HHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 248 CAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 248 ~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
.+.++|++++|+||+.++.+.+.++|+..||++...
T Consensus 237 ~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 237 ATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp HTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 888888899999999999999999999999999764
No 85
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.96 E-value=5.9e-28 Score=249.21 Aligned_cols=236 Identities=16% Similarity=0.192 Sum_probs=170.1
Q ss_pred hhcccceEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccc
Q 005078 10 FVKDVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (715)
Q Consensus 10 ~~~~~k~~VIKiGGs~l~~~~-~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~ 88 (715)
.|+..+++|||||||+++++. ..++.+.+.+++++|+.+.+.|+++|||||||..+....+... ++... ..+.
T Consensus 8 ~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~-g~~~~--~~~~--- 81 (255)
T 2jjx_A 8 HMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEW-GIDRV--EADN--- 81 (255)
T ss_dssp --CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHT-TCCHH--HHHH---
T ss_pred ccccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHc-CCCCC--ChHH---
Confidence 578899999999999999762 3678889999999999999999999999999776533222211 21100 0000
Q ss_pred cchHHHHHHcchHHHHHHHHHHhhc-CCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCC
Q 005078 89 ELDGKACAAVGQSSLMALYDTLFSQ-LDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (715)
Q Consensus 89 ~l~~~~~~a~G~~~~~~l~~~~l~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (715)
...+.+..+. .++...|.. .|+++..+ +..++.......+....+ ++|+.|+|||++|.
T Consensus 82 ---~~~~~~~~~~---~ll~~~l~~~~Gi~a~~l--~~~~~~~v~~~~~~~~~~-~lL~~g~IpVi~gg----------- 141 (255)
T 2jjx_A 82 ---IGTLGTIINS---LMLRGVLTSKTNKEVRVM--TSIPFNAVAEPYIRLRAV-HHLDNGYIVIFGGG----------- 141 (255)
T ss_dssp ---HHHHHHHHHH---HHHHHHHHHHCSSCEEEE--ESSCCCSSSEECCHHHHH-HHHHTTCEEEEEST-----------
T ss_pred ---HhHHHHHHHH---HHHHHHHHhhcCCceEEe--cHHHcCcccCcccHHHHH-HHHhCCcEEEEeCC-----------
Confidence 0122222222 235688888 99877532 221211000011223444 89999999999851
Q ss_pred CCCceeecchhHHHHHHhhcCCCEEEEec-cCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHH
Q 005078 168 DSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNA 245 (715)
Q Consensus 168 ~~~~~~~~~D~~A~~lA~~L~A~~li~lT-DVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~a 245 (715)
.+..++++|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.++ | +++|.+ .+
T Consensus 142 -~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G------~~~m~~--~a 209 (255)
T 2jjx_A 142 -NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---N------IQVMDQ--AA 209 (255)
T ss_dssp -TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---T------CCSSCH--HH
T ss_pred -CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---C------CccCHH--HH
Confidence 1122478899999999999999999999 99999999995 999999999999887652 2 578876 45
Q ss_pred HHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 246 AYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 246 a~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
+..+.++|++++|+|++.|+.+.+.++|+..||++.+.
T Consensus 210 ~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 210 LLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp HHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred HHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 55555699999999999999999999999999999764
No 86
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.96 E-value=3.1e-28 Score=245.85 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=154.2
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhcccCCCcccccCccccchH
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDG 92 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~--~l~~~~~~~~~~~~~~~~~~~l~~ 92 (715)
+++|||||||+++++ .+.+.+++++|+.+++ |+++|||||||+++... .++.. +. +.. .+..
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~-g~-------~~~--~l~~ 64 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE-----SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSAREL-GA-------SET--FCDY 64 (219)
T ss_dssp CEEEEEECSSTTTTC-----HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHT-TC-------CHH--HHHH
T ss_pred CeEEEEeChhhhCCh-----HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHc-CC-------Ccc--chHH
Confidence 479999999999973 3458999999999999 99999999998876663 22221 11 110 0101
Q ss_pred -HHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCc
Q 005078 93 -KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 171 (715)
Q Consensus 93 -~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~ 171 (715)
.++...++. .+++.+|... + .+ +. .+.+.|+++|+.|.|||++| +.
T Consensus 65 ~~~~~~~~~~---~l~~~~~~~~-~--~~------~~-------~~~~~i~~ll~~g~ipVi~~--------------g~ 111 (219)
T 2ij9_A 65 IGIAATRLNA---MLLISAIPSA-A--KK------VP-------VDFMEAEELSKLYRVVVMGG--------------TF 111 (219)
T ss_dssp HHHHHHHHHH---HHHHHHCTTB-C--SS------CC-------SSHHHHHHHHTTCSEEEECC--------------CS
T ss_pred HHHHHHHHHH---HHHHHHHHHh-c--CC------Cc-------CCHHHHHHHHHCCCEEEEeC--------------CC
Confidence 122222222 2333555332 1 11 11 12467899999999999986 11
Q ss_pred eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHH
Q 005078 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 250 (715)
Q Consensus 172 ~~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~ 250 (715)
.++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+++..+ ...+|||.+|..+|..++
T Consensus 112 ~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~---g~~~g~~~~~~~~a~~~~ 188 (219)
T 2ij9_A 112 PGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS---SAKAGTNVVIDLLAAKII 188 (219)
T ss_dssp SSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC--------CCCCCSCHHHHHHH
T ss_pred CCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC---CCCCCCccchHHHHHHHH
Confidence 247899999999999999999999999999999995 9999999999999998765541 134677766666666555
Q ss_pred -HcCCcEEEEeCCCcchHHHHHcCCcceeEE
Q 005078 251 -CAGIPVVITSGFAMDSIIKVLEGKRVGTLF 280 (715)
Q Consensus 251 -~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i 280 (715)
+++++++|+|+ .|+.+.++++|+..||++
T Consensus 189 ~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i 218 (219)
T 2ij9_A 189 ERSKIKTYVILG-TPENIMKAVKGEAVGTVI 218 (219)
T ss_dssp HHHTCCEEEEEC-CHHHHHHHHTTCCCSEEE
T ss_pred HHCCCeEEEEEC-CHhHHHHHHcCCCCCeEe
Confidence 57788999999 999999999999899986
No 87
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.95 E-value=1.8e-28 Score=270.13 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=175.7
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc----ccCccccc
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD----LQKPQNEL 90 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~----~~~~~~~l 90 (715)
+++|||+||++++++ +.+++++|+.++..|.++|||||||+++++.+. . .++++.|.+ .+...|..
T Consensus 59 ~~iViK~GGsv~~~~--------l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~-~-~gi~~~f~~G~RvTd~~~l~v 128 (460)
T 3s6g_A 59 RFAVIKVGGAVIQDD--------LPGLASALAFLQTVGLTPVVVHGGGPQLDAALE-A-ADIPTERVDGLRVTRDEAMPI 128 (460)
T ss_dssp GSEEEEECHHHHHHC--------HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHH-H-HSCCCCCCSSSCCBCTTTHHH
T ss_pred CEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHH-H-cCCCccccCCccCCCHHHHHH
Confidence 799999999977753 689999999999999999999999999998643 2 345545543 23333332
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEE---e-----cccccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCceec
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---V-----TDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVST 161 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~---~-----~~~d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~ 161 (715)
.. .++|+... .+...|...|+++..+. + +..|++..+. ...+.+.|+.+|+.|+|||++++ ..
T Consensus 129 v~---~~lg~vn~--~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~---g~ 200 (460)
T 3s6g_A 129 IR---DTLTQANL--ALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACL---GE 200 (460)
T ss_dssp HH---HHHHHHHH--HHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECE---EE
T ss_pred HH---HHHHHHHH--HHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECc---eE
Confidence 22 33343222 22246667777665431 1 1123322222 22457899999999999999862 11
Q ss_pred cCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeecc-chhhHHhcCCCCCcccCCh
Q 005078 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGM 239 (715)
Q Consensus 162 ~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~-e~~~~~~~g~~~~~~~ggM 239 (715)
+..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ ++++|++|+.+ |+++++..+ .++|||
T Consensus 201 -----~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~~~----~~tGGM 266 (460)
T 3s6g_A 201 -----TPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE-----DGDILSSINLATDFGDLMQAD----WVNGGM 266 (460)
T ss_dssp -----CTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT-----TSSBCCEEEHHHHHHHHHHCS----SSCHHH
T ss_pred -----CCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCeecceeCcHHHHHHHHhcC----CCCCcH
Confidence 1234444 9999999999999999999999999999986 37899999996 777766543 679999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 240 TAKVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 240 ~~Kl~aa~~a~~~gv~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
.+|+++|..+++++.+++|++++.++.+ .++++++.+||.+.+.
T Consensus 267 ~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 267 RLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 9999999999985435999999999998 5789999999999877
No 88
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.95 E-value=1.8e-27 Score=262.88 Aligned_cols=232 Identities=20% Similarity=0.235 Sum_probs=165.6
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchHH
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 93 (715)
|+++|+||||+++.+. +++.+++++|+.+.+.|+++||||||++..++.+++......... . .-..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-~------~~~~d 67 (421)
T 3ab4_A 1 MALVVQKYGGSSLESA------ERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-P------AREMD 67 (421)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-C------HHHHH
T ss_pred CCeEEEEEChhHhCCH------HHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-C------HHHHH
Confidence 4789999999999963 468999999999999999999999866667666665443221111 0 01124
Q ss_pred HHHHcchHHHHHHHHHHhhcCCCCc-----ceE-EecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCC
Q 005078 94 ACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (715)
Q Consensus 94 ~~~a~G~~~~~~l~~~~l~~~g~~~-----~~~-~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (715)
.+.+.|+.....++...|...|+++ .++ ++++..+........+.+.|+.+|+.|.|||++|+.++..
T Consensus 68 ~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~------ 141 (421)
T 3ab4_A 68 MLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNK------ 141 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCC------
Confidence 5667898777777889999999876 344 3444444332222334688999999999999988433322
Q ss_pred CC-Cce----eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHH
Q 005078 168 DS-SGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 241 (715)
Q Consensus 168 ~~-~~~----~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~ 241 (715)
+ +.. ++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++...| .+..
T Consensus 142 -~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G--------a~v~ 212 (421)
T 3ab4_A 142 -ETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG--------SKIL 212 (421)
T ss_dssp -----------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT--------CCSS
T ss_pred -CCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC--------CcCc
Confidence 2 222 26999999999999999999999999999999995 8999999999999999887654 2455
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 242 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 242 Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
|++++..|.++|+|++|.|++.+ ..||++...
T Consensus 213 ~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 213 VLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp CHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred hHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 77899999999999999999875 479998765
No 89
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.95 E-value=6.2e-28 Score=265.08 Aligned_cols=235 Identities=17% Similarity=0.193 Sum_probs=171.4
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-cc---Cccccc
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQ---KPQNEL 90 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~---~~~~~l 90 (715)
+++|||+||++++++ +.+++++|+.|+..|.++|||||||+++++.+. ..++++.|.+ ++ ..+|..
T Consensus 49 ~~iVIK~GGsv~~~~--------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~f~~G~RvTd~~tl~v 118 (464)
T 4ab7_A 49 QFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLE--AQGIEPDYIDGIRITDEHTMAV 118 (464)
T ss_dssp CCEEEEECHHHHHHC--------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHH--HTTCCCCEETTEECBCHHHHHH
T ss_pred ceEEEEECHHHhhch--------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHH--HcCCCccccCCeecCCHHHHHH
Confidence 689999999998763 689999999999999999999999999998543 2345555543 22 222333
Q ss_pred hHHHHHHcchHHHHHHHHHHhhcCCCCcceEE---ecc-----cccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCceec
Q 005078 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VTD-----SDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVST 161 (715)
Q Consensus 91 ~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~---~~~-----~d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~ 161 (715)
..++ +|+. ...+...|...|+++..+. ++. .|++..+. ...+++.|+.+|+.|+|||++| +++.
T Consensus 119 v~mv---~~~v--n~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~-~g~~- 191 (464)
T 4ab7_A 119 VRKC---FLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET- 191 (464)
T ss_dssp HHHH---HHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEES-EEEC-
T ss_pred HHHH---HHHH--HHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcC-CcCC-
Confidence 3323 2322 2234466677777665441 121 12222221 2245789999999999999987 2222
Q ss_pred cCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeeccc-hhhHHhcCCCCCcccCCh
Q 005078 162 RKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGGM 239 (715)
Q Consensus 162 ~~~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~e-~~~~~~~g~~~~~~~ggM 239 (715)
..+..+ +|+|++|+++|.+|+|++|+|+|||||||++ |++++|++|+++| +++++.. ..++|||
T Consensus 192 ------~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~----~~~tgGM 257 (464)
T 4ab7_A 192 ------ASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYGT 257 (464)
T ss_dssp ------TTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTC----SSCCHHH
T ss_pred ------CCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhc----CCCCCcH
Confidence 234445 9999999999999999999999999999997 3589999999976 5556553 3679999
Q ss_pred HHHHHHHHHHHH---cCCcEEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 240 TAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 240 ~~Kl~aa~~a~~---~gv~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
.||++++..|++ .|.+++|++ ++.+ .++++++.+||.+...
T Consensus 258 ~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 258 KLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 999996666665 477799999 5565 7889999999999876
No 90
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.94 E-value=4e-28 Score=267.49 Aligned_cols=239 Identities=19% Similarity=0.162 Sum_probs=171.0
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCccc-ccCcc---ccc
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NEL 90 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~-~~~~~---~~l 90 (715)
+++|||+||++++++ +..++++|+.++..|.++|||||||+++++.+. ..++++.|.+ ++.++ |..
T Consensus 62 ~~iViK~GG~v~~~~--------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~--~~gi~~~f~~G~RvTd~~~l~v 131 (467)
T 3s6k_A 62 RFAVVKVGGAVLRDD--------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELS--AAGIEKQTVNGLRVTSPHALAI 131 (467)
T ss_dssp TSCCCCCCHHHHTTC--------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHH--TTSCCCCCCSSSCCBCHHHHHH
T ss_pred cEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHH--HcCCCccccCCccCCCHHHHHH
Confidence 689999999977753 589999999999999999999999999988643 2345555543 23222 222
Q ss_pred hHHHHHHcchHH---HHHHHHHHhhcCCCCcceE---EecccccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCceeccC
Q 005078 91 DGKACAAVGQSS---LMALYDTLFSQLDVTSSQL---LVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (715)
Q Consensus 91 ~~~~~~a~G~~~---~~~l~~~~l~~~g~~~~~~---~~~~~d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~ 163 (715)
.. .++|+.. +.++.+..+.+.++....+ .++..|++..+. ...+.+.|+.+|+.|+|||+++.+
T Consensus 132 v~---~~~g~vn~~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg------ 202 (467)
T 3s6k_A 132 VR---KVFQASNLKLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLG------ 202 (467)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCC------
T ss_pred HH---HHHHHHHHHHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECce------
Confidence 22 2233322 2223333333333332211 011223332222 234578999999999999998521
Q ss_pred CCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCcCccccceeecc-chhhHHhcCCCCCcccCChHH
Q 005078 164 APYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTA 241 (715)
Q Consensus 164 ~~~~~~~~~~-~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~~p~a~~i~~is~~-e~~~~~~~g~~~~~~~ggM~~ 241 (715)
++..|..+ +|+|++|+++|.+|+||+|+|+|||||||++| +++|++|+.. |+.+++.. ..++|||.+
T Consensus 203 --~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGGM~~ 271 (467)
T 3s6k_A 203 --ETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE-----GKLIDSINLSTEYDHLMQQ----PWINGGMRV 271 (467)
T ss_dssp --CCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----CCCCCCCCTTTTTHHHHTS----SSCCSHHHH
T ss_pred --ECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----CCCccccChHHHHHHHHhc----CCCCCchHH
Confidence 12233344 99999999999999999999999999999863 7899999986 67766653 367999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchH-HHHHcCCcceeEEecC
Q 005078 242 KVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (715)
Q Consensus 242 Kl~aa~~a~~~gv~v~I~~g~~~~~l-~~~~tg~~iGT~i~~~ 283 (715)
|+++|..+++.+.+++|+++..++.+ .++++++.+||.+.+.
T Consensus 272 Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 272 KIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred HHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 99999999885445999999999998 5789999999998776
No 91
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.94 E-value=2.5e-26 Score=263.06 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=172.2
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCCcccccCccccchHH
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 93 (715)
|+++|+||||+++.+. +++++++++|+.+++.|+++||||||.+..++.+++.......+. .. -..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~---~~----~~~d 67 (600)
T 3l76_A 1 MALIVQKFGGTSVGTV------ERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNP---CR----REMD 67 (600)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSC---CH----HHHH
T ss_pred CceEEEEeCCCCcCCH------HHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCC---CH----HHHH
Confidence 4689999999999974 468999999999999999999999994445554444332221111 00 1124
Q ss_pred HHHHcchHHHHHHHHHHhhcCCCCcc-----eE-EecccccCchhHHhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCC
Q 005078 94 ACAAVGQSSLMALYDTLFSQLDVTSS-----QL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (715)
Q Consensus 94 ~~~a~G~~~~~~l~~~~l~~~g~~~~-----~~-~~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (715)
.+.++|+.....++...|..+|+++. +. +++++.+........+++.|+++|+.|.|||++|+.++..
T Consensus 68 ~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~------ 141 (600)
T 3l76_A 68 MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISS------ 141 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC--------
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCC------
Confidence 77888998888899999999998853 33 3333333222222222367889999999999987322211
Q ss_pred CCC--ce----eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChH
Q 005078 168 DSS--GI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMT 240 (715)
Q Consensus 168 ~~~--~~----~~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~ 240 (715)
+| .. ++++|++|+.+|.+|+||+|+++|||||||++||+ +|++++|++|+++|+.++... ++++|+
T Consensus 142 -~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~------G~~vm~ 214 (600)
T 3l76_A 142 -VEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL------GAKVLH 214 (600)
T ss_dssp ---CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG------GTTTCC
T ss_pred -CCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC------CCCccH
Confidence 22 11 26799999999999999999999999999999995 999999999999999987654 479999
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 241 AKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 241 ~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
| +++..|.++|+|++|.|++.+ ..||++...
T Consensus 215 p--~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 215 P--RAVEIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp H--HHHHHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred H--HHHHHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 9 899999999999999998764 468888765
No 92
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.91 E-value=7.2e-24 Score=236.91 Aligned_cols=238 Identities=20% Similarity=0.292 Sum_probs=178.0
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhcccCC--Ccc---c------
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNS--SLA---D------ 82 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~-~vviVhGgg~~i~~~~l~~~~~~~~--~~~---~------ 82 (715)
+++|.||||+++.+. ++++++++.|... ..|+ ++|+|+|+.+.+++.+++.+..... +.. .
T Consensus 1 ~~~V~KFGGtSv~~~------~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~ 73 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSG------ERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIR 73 (473)
T ss_dssp -CEEEEECTTTTSSH------HHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCH------HHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 378999999999974 4688888888766 6788 9999999988888876654322110 000 0
Q ss_pred ---------ccCc----c--------------------------ccchHHHHHHcchHHHHHHHHHHhhcCCCCcc----
Q 005078 83 ---------LQKP----Q--------------------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSS---- 119 (715)
Q Consensus 83 ---------~~~~----~--------------------------~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~---- 119 (715)
+... + ..-..+.+.+.|+.....++...|...|+++.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~ 153 (473)
T 3c1m_A 74 EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEG 153 (473)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 0000 0 00002345566776666677888989998764
Q ss_pred -eE-EecccccCchhH-HhHHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce--e--ecchhHHHHHHhhcCCCEE
Q 005078 120 -QL-LVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI--F--WDNDSLAGLLALELKADLL 192 (715)
Q Consensus 120 -~~-~~~~~d~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~--~--~~~D~~A~~lA~~L~A~~l 192 (715)
+. ++++.+++...+ ...+.+.|+.+|+.|+|||++|+.+... ++.. + +++|++|+.+|.+|+||.|
T Consensus 154 ~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~-------~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l 226 (473)
T 3c1m_A 154 GEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTE-------EGYITTLGRGGSDYSAALIGYGLDADII 226 (473)
T ss_dssp HHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEET-------TSCEEECCTTTHHHHHHHHHHHTTCSEE
T ss_pred hheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCC-------CCCEEEeCCCChHHHHHHHHHHcCCCEE
Confidence 33 566666655444 3456789999999999999998544332 2222 2 6999999999999999999
Q ss_pred EEeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Q 005078 193 VLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVL 271 (715)
Q Consensus 193 i~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~ 271 (715)
+++|||||||++||+ +|++++|++++++|+.++...| .++|.|| ++..+.++|++++|+|++.|+
T Consensus 227 ~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g------~~~m~~~--a~~~a~~~gi~v~I~~~~~~~------ 292 (473)
T 3c1m_A 227 EIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG------AKVLHPR--TIEPAMEKGIPILVKNTFEPE------ 292 (473)
T ss_dssp EEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT------CTTSCGG--GHHHHHHHTCCEEEEETTSTT------
T ss_pred EEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC------CcchHHH--HHHHHHHcCCEEEEEecCCCC------
Confidence 999999999999995 8999999999999999877644 5789996 888899999999999998874
Q ss_pred cCCcceeEEecC
Q 005078 272 EGKRVGTLFHRD 283 (715)
Q Consensus 272 tg~~iGT~i~~~ 283 (715)
..||++...
T Consensus 293 ---~~GT~i~~~ 301 (473)
T 3c1m_A 293 ---SEGTLITND 301 (473)
T ss_dssp ---SCCEEEESC
T ss_pred ---CceEEEecc
Confidence 579998765
No 93
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.90 E-value=9.1e-23 Score=228.30 Aligned_cols=240 Identities=14% Similarity=0.158 Sum_probs=174.4
Q ss_pred ccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCC------Ccc----c
Q 005078 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNS------SLA----D 82 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~------~~~----~ 82 (715)
+.+++|.||||+++.+. ++++++++.|... .++++|+|+|+.+.+++.+++.+..... .+. .
T Consensus 25 ~~~~~V~KFGGTSva~~------e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~ 96 (510)
T 2cdq_A 25 KGITCVMKFGGSSVASA------ERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSI 96 (510)
T ss_dssp CCCCEEEEECTGGGSSH------HHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHH
T ss_pred CCCeEEEEECCcccCCH------HHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHH
Confidence 46789999999999974 4688888887532 3578999999988888776544322100 000 0
Q ss_pred c-------------cC-------------------cc--ccchHHHHHHcchHHHHHHHHHHhhcCCCCc-----ceE-E
Q 005078 83 L-------------QK-------------------PQ--NELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQL-L 122 (715)
Q Consensus 83 ~-------------~~-------------------~~--~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~-----~~~-~ 122 (715)
+ +. .. ..-..+.+.+.|+.....++...|...|+++ .++ +
T Consensus 97 i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l 176 (510)
T 2cdq_A 97 IKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGF 176 (510)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeE
Confidence 0 00 00 0011257788899888888999999999875 454 5
Q ss_pred ecccccCchh----HHhHHHHHHHH-HHhCCCeEEEeCCCceeccCCCCCCCCc-e-e--ecchhHHHHHHhhcCCCEEE
Q 005078 123 VTDSDFRDED----FRKQLYDTVQS-LLDLRVIPIFNENDAVSTRKAPYEDSSG-I-F--WDNDSLAGLLALELKADLLV 193 (715)
Q Consensus 123 ~~~~d~~~~~----~~~~~~~~i~~-ll~~g~iPVv~g~d~v~~~~~~~~~~~~-~-~--~~~D~~A~~lA~~L~A~~li 193 (715)
+++.++.+.. .+.+..+.+.+ |++.|.|||++|+.+.... +|. + + +++|++|+.+|.+|+|+.|+
T Consensus 177 ~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~------~g~ittlgrGgsD~tAa~lA~~l~Ad~l~ 250 (510)
T 2cdq_A 177 ITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWK------TGAVTTLGRGGSDLTATTIGKALGLKEIQ 250 (510)
T ss_dssp EECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETT------TCCEEECCTTHHHHHHHHHHHHHTCSEEE
T ss_pred EEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCC------CCceEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 6766665432 22233455554 7899999999884333210 111 1 2 66999999999999999999
Q ss_pred EeccCCccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHc
Q 005078 194 LLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 272 (715)
Q Consensus 194 ~lTDVdGV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~t 272 (715)
++|||||||++||+ +|++++|++|+++|+.++... +.++|+|| ++..|.++|+|++|.|++.|+
T Consensus 251 i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~------Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~------- 315 (510)
T 2cdq_A 251 VWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYF------GAQVLHPQ--SMRPAREGEIPVRVKNSYNPK------- 315 (510)
T ss_dssp EEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHH------HSSCCCHH--HHHHHHHHTCCEEEEETTSTT-------
T ss_pred EEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhc------CcchhHHH--HHHHHHHCCCeEEEEccCcCC-------
Confidence 99999999999995 899999999999999887654 36789885 888899999999999998874
Q ss_pred CCcceeEEecC
Q 005078 273 GKRVGTLFHRD 283 (715)
Q Consensus 273 g~~iGT~i~~~ 283 (715)
..||++...
T Consensus 316 --~~GT~I~~~ 324 (510)
T 2cdq_A 316 --APGTIITKT 324 (510)
T ss_dssp --SCCEEEESC
T ss_pred --CCCeEEecc
Confidence 578988765
No 94
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.89 E-value=2.8e-23 Score=229.88 Aligned_cols=236 Identities=18% Similarity=0.175 Sum_probs=170.6
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhcccCCC-----ccc------
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSS-----LAD------ 82 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~~~~~~~~~-----~~~------ 82 (715)
|+++|.||||+++.+. ++++++++.|.. ...++|+|+|+.+.+++.+++.+...... +..
T Consensus 2 m~~~V~KFGGTSv~~~------e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~ 72 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADF------DAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQF 72 (449)
T ss_dssp -CCEEEEECSGGGSSH------HHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCH------HHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5789999999999974 457777777743 34589999999988888776544321000 000
Q ss_pred -----ccC------------------------ccccchHHHHHHcchHHHHHHHHHHhhcCCCCc-----ceEEeccccc
Q 005078 83 -----LQK------------------------PQNELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQLLVTDSDF 128 (715)
Q Consensus 83 -----~~~------------------------~~~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~-----~~~~~~~~d~ 128 (715)
+.. ....-..+.+.++|+..+..++...|...|+++ .++++++.++
T Consensus 73 ~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~ 152 (449)
T 2j0w_A 73 AILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRF 152 (449)
T ss_dssp HHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCT
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCC
Confidence 000 000112367889999999889999999999887 5666777776
Q ss_pred CchhHHh-----HHHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce--e--ecchhHHHHHHhhcCCCEEEEeccCC
Q 005078 129 RDEDFRK-----QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI--F--WDNDSLAGLLALELKADLLVLLSDVE 199 (715)
Q Consensus 129 ~~~~~~~-----~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~--~--~~~D~~A~~lA~~L~A~~li~lTDVd 199 (715)
.+..+.. +..+.+..|++.+ |||++|+.+... ++.. + +++|++|+.+|.+|+||+|+++||||
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~-------~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVd 224 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQLLPRLNEG-LVITQGFIGSEN-------KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 (449)
T ss_dssp TSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECT-------TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCC-------CCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccC
Confidence 6543321 2345667777666 999998433222 2222 2 66999999999999999999999999
Q ss_pred ccccCCCC-CcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCccee
Q 005078 200 GLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGT 278 (715)
Q Consensus 200 GV~~~dP~-~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT 278 (715)
|||++||+ +|++++|++|+++|+.++...|. .-|.| +++..|.++|++++|.|++.|+ ..||
T Consensus 225 Gv~~~DPr~~~~a~~i~~is~~e~~ela~~G~------kvlh~--~a~~~a~~~gi~v~I~~~~~p~---------~~GT 287 (449)
T 2j0w_A 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA------KVLHP--ATLLPAVRSDIPVFVGSSKDPR---------AGGT 287 (449)
T ss_dssp SEESSCTTTCTTCCEESEEEHHHHHHHHHTTC------TTSCT--TTHHHHHHHTCCEEEEESSCTT---------SCCE
T ss_pred CcCcCCCCCCCCCEEccCccHHHHHHHHhcCC------ccchH--HHHHHHHHCCCeEEEEECCCCC---------CCee
Confidence 99999995 89999999999999998765431 12222 6888899999999999999874 5799
Q ss_pred EEecC
Q 005078 279 LFHRD 283 (715)
Q Consensus 279 ~i~~~ 283 (715)
++...
T Consensus 288 ~I~~~ 292 (449)
T 2j0w_A 288 LVCNK 292 (449)
T ss_dssp EEESC
T ss_pred EEecc
Confidence 98765
No 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.89 E-value=4.9e-23 Score=226.84 Aligned_cols=234 Identities=16% Similarity=0.171 Sum_probs=170.0
Q ss_pred ceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhH-------hhHHHhhhhcccCCC--ccc---
Q 005078 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVG-------VGRQRLRYRKLVNSS--LAD--- 82 (715)
Q Consensus 15 k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~-------i~~~~l~~~~~~~~~--~~~--- 82 (715)
+|.|.||||+++.+. ++++++++.|.. .+.++++|+|+.+. +++.++........+ +..
T Consensus 3 ~m~V~KFGGtSva~~------e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~~ 73 (446)
T 3tvi_A 3 KIVVTKFGGSSLADS------NQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFK 73 (446)
T ss_dssp -CEEEEECGGGGSSH------HHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccEEEEeCccccCCH------HHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHHH
Confidence 579999999999974 467787777763 47789999999763 666655444321110 000
Q ss_pred -ccC-----------cc--------------ccchHHHHHHcchHHHHHHHHHHhhcCCCCcceEEecccccCchhHHhH
Q 005078 83 -LQK-----------PQ--------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQ 136 (715)
Q Consensus 83 -~~~-----------~~--------------~~l~~~~~~a~G~~~~~~l~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~ 136 (715)
+.. .. ..-..+.+.+.|+..+..++...|.+..+++.++.++.+ ........
T Consensus 74 ~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~--~~~~~~~~ 151 (446)
T 3tvi_A 74 LISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDK--SGCFDEKK 151 (446)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC----CBCHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCC--CCceehHh
Confidence 000 00 000134677999988888889999888888888766543 22223334
Q ss_pred HHHHHHHHHhCCCeEEEeCCCceeccCCCCCCCCce--e--ecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CcCc
Q 005078 137 LYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI--F--WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNS 211 (715)
Q Consensus 137 ~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~--~--~~~D~~A~~lA~~L~A~~li~lTDVdGV~~~dP~-~p~a 211 (715)
..+.|.++|+.|.|||++|+.+... ++.. + +++|++|+.+|.+|+|++|+++|||||||++||+ +|++
T Consensus 152 ~~~~l~~~l~~~~v~Vv~Gf~g~~~-------~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a 224 (446)
T 3tvi_A 152 SYEKIKEKVLSCNKAVIPGFYGSSF-------NGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENP 224 (446)
T ss_dssp HHHHHHHHTTTCSSEECCCSEEECT-------TSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSC
T ss_pred hHHHHHHHHhcCCeEEeeCceecCC-------CCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCC
Confidence 5688999999999999988432222 2221 2 6899999999999999999999999999999995 9999
Q ss_pred cccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCcceeEEecC
Q 005078 212 KLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (715)
Q Consensus 212 ~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tg~~iGT~i~~~ 283 (715)
++|++|+++|+.++...| .++| |.+++..+.++|+|++|.|++.|+ ..||++...
T Consensus 225 ~~i~~is~~e~~ela~~G------a~vl--~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 225 KTISKISYKELRELSYMG------ATVL--HEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp CBCSEEEHHHHHHTTTC----------C--CSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred eEcceeCHHHHHHHHhCC------CCcc--hHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 999999999999876544 4566 458999999999999999998774 579998766
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.06 E-value=0.2 Score=53.47 Aligned_cols=283 Identities=15% Similarity=0.142 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC----ChhhHHHHHHHHHHhCCE--EEEeCC
Q 005078 363 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 436 (715)
Q Consensus 363 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~--vvlKps 436 (715)
.++.+.+.++.+.....+..... ...+|.....++.|+--|++..|. +|-..++.+.||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 45566666776643222211111 113566777888999999999992 565666778899999986 444454
Q ss_pred cc---hHHHHHHHHHHHHHhcccccCcCceEEec-Ccch-hhHh---hcCCCCccEEEeecCHHHHHHHHhhcCCCEEEe
Q 005078 437 KE---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREE-IPDL---LKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGH 508 (715)
Q Consensus 437 ~~---tp~t~~~l~~~~~~al~~alP~gvv~vv~-~~~~-~~~~---l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lE 508 (715)
+. .|.+ +..+++ .|+=.+.. ||.. ++++ ..+=|+||+|+=-|..-|..+=.+-.+.--+=-
T Consensus 170 ~~G~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~VgIDm 238 (423)
T 4gic_A 170 PRGELNALV-LAAAYI----------SGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQVGIDM 238 (423)
T ss_dssp GGGCCCHHH-HHHHHH----------HTCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTTBEECC
T ss_pred CCCCccHHH-HHHHHh----------cCCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCCcCccc
Confidence 43 2322 122222 25556665 5533 3322 123478999998888654322211122111111
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCccccccccCC
Q 005078 509 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 586 (715)
Q Consensus 509 lGGk~p--~iV~~dADl~~A~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~ 586 (715)
.-|-+= +|-|++||.+..+..++.=+=.... ..-++|..+ .+|.+++.+++++.-.. -++.
T Consensus 239 ~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a~~iLvT~s---~~la~~V~~~i~~~l~~---l~r~------- 301 (423)
T 4gic_A 239 VAGPSEILVISDGRTDPDWIAMDLFSQAEHDED----AQAILISPD---AAHLEAVQASIERLLPG---MERA------- 301 (423)
T ss_dssp CCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHGGG---CTTH-------
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhhccCCC----CeEEEEeCc---HHHHHHHHHHHHHHHhh---CccH-------
Confidence 223333 3345669999988777653332211 112455543 35666665555532100 0110
Q ss_pred CCCCccc--cccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHhcC-cceEEEcCCCCC--CC-----
Q 005078 587 ETRLFHH--EYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVD-SAAVFHNASTRF--CD----- 656 (715)
Q Consensus 587 ~~~~~~e--E~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~l~-~G~V~iN~~~~~--~~----- 656 (715)
++.++ +-+| .++-++|++||++++|... +=-.-|.++|.. .+..+++ +|.|++-..+.. .+
T Consensus 302 --~i~~~sl~~~g---~ii~v~~~~ea~~~~N~~A-PEHLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~aG~ 372 (423)
T 4gic_A 302 --EVIRTSLERRG---GMILVDDLEQAAAVANRIA-PEHLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCAGP 372 (423)
T ss_dssp --HHHHHHHHHHC---EEEECSSHHHHHHHHHHHC-CSEEEEESSCHH---HHGGGCCCCSEEEEC--------------
T ss_pred --HHHHHHHhcCc---eEEEEeehHHHHHHHHhhC-hHHhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCcCC
Confidence 01111 1233 4566899999999999976 346778899975 4666665 999999865432 11
Q ss_pred CCccCCcccccccccccccccccccccceEEEEEEE
Q 005078 657 GARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 657 ~~pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
+.-++. +|.. +..+.-++..|...-++..
T Consensus 373 NHvLPT---~G~A----r~~sgLsv~~F~K~~s~~~ 401 (423)
T 4gic_A 373 NHVLPT---SGTA----RFSSPLGVYDFQKRSSLIY 401 (423)
T ss_dssp --CCCC---TTGG----GTCCCCCGGGGEEEEEEEC
T ss_pred CccCCC---CCcc----cccCCCCHHHeeeeeeEEE
Confidence 111111 1221 2346678888988766543
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=95.89 E-value=2.4 Score=45.39 Aligned_cols=284 Identities=11% Similarity=0.105 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCeEEEEeeeceeEEEEEcCC----ChhhHHHHHHHHHHhCCEEEE--eCC
Q 005078 363 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNGLLL--KGG 436 (715)
Q Consensus 363 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~vvl--Kps 436 (715)
-++.+.++++.+-....+..... . ...|.....++.|+--|++..|. +|-..++.+.||-.||+.=|+ -|.
T Consensus 87 ai~~A~~nI~~fH~~Q~~~~~~~--~-~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp 163 (434)
T 1kae_A 87 AMAVAVKNIETFHTAQKLPPVDV--E-TQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP 163 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEE--E-EETTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCceE--E-ecCCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCC
Confidence 45556666776643222211011 1 12367777889999999999993 565566778899999986444 454
Q ss_pred cchHHHHHHHHHHHHHhcccccCcCceEEec-Ccch-hhHh---hcCCCCccEEEeecCHH--HHHHHHhh-cCCCEEEe
Q 005078 437 KEAMRSNAILHKVITSAIPDTVGEKLIGLVT-SREE-IPDL---LKLDDVIDLVIPRGSNK--LVSQIKES-TKIPVLGH 508 (715)
Q Consensus 437 ~~tp~t~~~l~~~~~~al~~alP~gvv~vv~-~~~~-~~~~---l~~~~~v~~v~fTGS~~--~g~~i~~~-a~~~~~lE 508 (715)
.-.|.+- .-+++ .|+=.+.. ||.. ++++ -.+=|+||+|+=-|..= .+|+.... .+.--+=-
T Consensus 164 ~i~p~iL-~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm 232 (434)
T 1kae_A 164 PIADEIL-YAAQL----------CGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDM 232 (434)
T ss_dssp SCCHHHH-HHHHH----------TTCCEEEECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESC
T ss_pred CCCHHHH-HHHHH----------cCCCEEeecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCC
Confidence 3344321 11122 25555555 5433 3322 12347899999888853 44544421 22111111
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccCchhHHHHHHHHHhcCCeEecCccccccccCC
Q 005078 509 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 586 (715)
Q Consensus 509 lGGk~p--~iV~~dADl~~A~~~iv~~~f~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~ 586 (715)
.-|-+= +|-|++||.+..+..++.=+=.... ..-++|..+ ++|.+++.+++++.-..+ ++.
T Consensus 233 ~AGPSEilViAD~tAnp~~vAaDLLsQAEHd~~----a~aiLvT~s---~~la~~V~~ev~~ql~~l---pr~------- 295 (434)
T 1kae_A 233 PAGPSEVLVIADSGATPDFVASDLLSQAEHGPD----SQVILLTPA---ADMARRVAEAVERQLAEL---PRA------- 295 (434)
T ss_dssp CCCCCEEEEEECTTSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHHTTC---TTH-------
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHhccCCC----CcEEEEECC---HHHHHHHHHHHHHHHHhC---ChH-------
Confidence 223333 3446679999988777653332211 122455433 245555555544320000 110
Q ss_pred CCCCccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHHh-cCcceEEEcCCCCC-------CCCC
Q 005078 587 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQ-VDSAAVFHNASTRF-------CDGA 658 (715)
Q Consensus 587 ~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~i~t~d~~~~~~~~~~-l~~G~V~iN~~~~~-------~~~~ 658 (715)
.+. ++-+..- .|+-++|+|||++++|... +=-.-|.++|... +..+ -.+|.|++-..+.- +++.
T Consensus 296 --~ia-~~sl~~~-~ii~v~~l~ea~~~~N~~A-PEHLel~~~dp~~---~l~~I~nAGaIFlG~~tpe~~GDY~aG~NH 367 (434)
T 1kae_A 296 --ETA-RQALNAS-RLIVTKDLAQCVEISNQYG-PEHLIIQTRNARE---LVDSITSAGSVFLGDWSPESAGDYASGTNH 367 (434)
T ss_dssp --HHH-HHHHTTC-EEEECSSHHHHHHHHHHHC-CSEEEEESTTHHH---HGGGCCSCSEEEESTTCCHHHHHHTSSSCC
T ss_pred --HHH-HHHHHcC-eEEEECCHHHHHHHHHHhh-hHhhhhhhcCHHH---HHhhcCcccchhcCCCCchhhcccccCCCc
Confidence 111 2223444 6888999999999999976 3467889999754 4444 56999999976531 1221
Q ss_pred ccCCcccccccccccccccccccccceEEEEEEE
Q 005078 659 RFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 692 (715)
Q Consensus 659 pfG~g~~sG~~~~~~~~~g~~gl~~ft~~K~v~~ 692 (715)
-++- +|.. +..|+-++..|...-++..
T Consensus 368 vLPT---~G~A----R~~sgLsV~~F~K~~s~~~ 394 (434)
T 1kae_A 368 VLPT---YGYT----ATCSSLGLADFQKRMTVQE 394 (434)
T ss_dssp CCCC---TTGG----GTCCCSCGGGGEEEEEEEE
T ss_pred ccCC---CCce----eccCCCcHHhccceeeEEE
Confidence 1222 1221 2346778889988766654
No 98
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=32.23 E-value=39 Score=33.02 Aligned_cols=44 Identities=14% Similarity=0.350 Sum_probs=35.4
Q ss_pred cccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 12 ~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
++.|.+++=+.|+++.++. .+....+.|+.++++|++++++.|.
T Consensus 4 ~~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 4 KTYKGYLIDLDGTMYNGTE------KIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CCCSEEEEECSSSTTCHHH------HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccCCEEEEeCcCceEeCCE------eCccHHHHHHHHHHCCCeEEEEeCC
Confidence 3478999999999987532 2456778899999999999999873
No 99
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=31.75 E-value=84 Score=23.74 Aligned_cols=36 Identities=3% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHH
Q 005078 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (715)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 333 (715)
+.++..-..|+.+|.++|..+.......-+++..++
T Consensus 28 ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 28 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778999999999999887776666555444
No 100
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=31.08 E-value=52 Score=32.00 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=33.6
Q ss_pred hcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 11 VKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 11 ~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
|+|.|.++.=+.|+++.+.. .+. ....+.|+.+++.|++++++.|-
T Consensus 2 M~M~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 47 (274)
T 3fzq_A 2 MKLYKLLILDIDGTLRDEVY-GIP----ESAKHAIRLCQKNHCSVVICTGR 47 (274)
T ss_dssp --CCCEEEECSBTTTBBTTT-BCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcceEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678899999999998754 343 34556777788899998888753
No 101
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=30.71 E-value=55 Score=32.99 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=36.1
Q ss_pred hhhhhcc--cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 7 SRAFVKD--VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 7 ~~~~~~~--~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
++.-|.+ .|.++.=+.|+++.+.++.+. ....+.|.++++.|++++++.|-
T Consensus 18 ~~~~~~~M~ikli~~DlDGTLl~~~~~~is----~~~~~al~~l~~~Gi~v~iaTGR 70 (301)
T 2b30_A 18 VEEALKGADIKLLLIDFDGTLFVDKDIKVP----SENIDAIKEAIEKGYMVSICTGR 70 (301)
T ss_dssp HHHHTTTCCCCEEEEETBTTTBCCTTTCSC----HHHHHHHHHHHHHTCEEEEECSS
T ss_pred hhhccccccccEEEEECCCCCcCCCCCccC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 5554443 478999999999986223454 24457788888889999888754
No 102
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=30.71 E-value=40 Score=32.89 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=35.1
Q ss_pred cccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 12 ~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
++.|.+++=+.|+++.+.. + +....+.|+.+++.|++++++.|.
T Consensus 6 ~~~kli~~DlDGTLl~~~~--~----~~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 6 PDKKGYIIDIDGVIGKSVT--P----IPEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp CCCSEEEEECBTTTEETTE--E----CHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCEEEEcCcCcEECCCE--e----CcCHHHHHHHHHHcCCeEEEEeCc
Confidence 4478999999999997654 2 234677888999999999999974
No 103
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=29.43 E-value=60 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.416 Sum_probs=32.8
Q ss_pred ccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 005078 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSS 60 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhG 60 (715)
|.|.++.=+.|+++......+. ....+.|+++++.|++++++.|
T Consensus 11 miKli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTG 54 (268)
T 3r4c_A 11 MIKVLLLDVDGTLLSFETHKVS----QSSIDALKKVHDSGIKIVIATG 54 (268)
T ss_dssp CCCEEEECSBTTTBCTTTCSCC----HHHHHHHHHHHHTTCEEEEECS
T ss_pred ceEEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcC
Confidence 4688999999999984333344 3456778888889999888875
No 104
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=28.57 E-value=66 Score=31.86 Aligned_cols=43 Identities=9% Similarity=0.325 Sum_probs=33.1
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
.|.++.=+.|+++.+.. .++ ....+.|.++++.|++++++.|-
T Consensus 5 ~kli~~DlDGTLl~~~~-~i~----~~~~~aL~~l~~~Gi~vviaTGR 47 (282)
T 1rkq_A 5 IKLIAIDMDGTLLLPDH-TIS----PAVKNAIAAARARGVNVVLTTGR 47 (282)
T ss_dssp CCEEEECCCCCCSCTTS-CCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEeCCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 57899999999998643 454 34467788888999999888864
No 105
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=27.54 E-value=70 Score=26.66 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=39.5
Q ss_pred ccccceEEEcCcccC----chhHHHHHHHHHhcCCeEe--cCccccccccCCCCCCccccccCceEEEEEeCCHHHHHHH
Q 005078 541 CNAMETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (715)
Q Consensus 541 C~a~~rv~V~~~i~d----~~f~~~l~~~~~~~~~~~~--g~~~~~~~~pv~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 614 (715)
|+..-+++++-+|.| +++.++....+++.|.+++ |+.. . +...+. .|-+.|+.|+|.+.|.+.
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~-~---------~~eG~~-~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSV-T---------ELEGTA-RARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCE-E---------EEESCC-CSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCc-e---------EEecCC-cCeEEEEECCCHHHHHHH
Confidence 344445555544442 3455555555666665543 2211 0 111111 348889999999999999
Q ss_pred HHhcCC
Q 005078 615 IHQHGS 620 (715)
Q Consensus 615 aN~~~~ 620 (715)
.|+-+|
T Consensus 71 ~~s~~Y 76 (99)
T 2fiu_A 71 YNSPEY 76 (99)
T ss_dssp HHSHHH
T ss_pred HcCHHH
Confidence 997665
No 106
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=27.01 E-value=30 Score=31.19 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=32.9
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
+|.+++=+.|+++.+....+.. ......+.|..+++.|++++|+.|=
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~-~~~~~~~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGE-EIPFAVETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCC-BCTTHHHHHHHHHHTTCEEEECCSC
T ss_pred CeEEEEECcCCCCCCCCccccc-cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999854211100 0124567888899999999888863
No 107
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.65 E-value=1.2e+02 Score=24.20 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHH
Q 005078 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (715)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 333 (715)
+.++..-..|+.++.++|..+.......-+++..++
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM 82 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778999999999999887777666655544
No 108
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=24.56 E-value=2.6e+02 Score=27.34 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc--------chHHHHHcCCcceeEEecCCcccccHhhHHHHHHHH-HHH-----HH---
Q 005078 243 VNAAYCAACAGIPVVITSGFAM--------DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAA-RES-----SR--- 305 (715)
Q Consensus 243 l~aa~~a~~~gv~v~I~~g~~~--------~~l~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A-~~a-----~~--- 305 (715)
+++|..|.+.||.+|.+.-... ..|.++..- .-|+++.+. .++..+.++.. +++ +.
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~-tGG~yf~a~------~~~l~~~~~~~t~~~~~~t~q~~v~ 100 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADA-GGGMCRIVQ------PADISATAQMMTHQTMQMTLQQVVN 100 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHH-TTSCEEEEC------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHh-cCCeEEEee------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999887764221 334554431 236666665 34544433221 222 11
Q ss_pred ---------HHhcCCHHHHHHHHHHHHHHHH
Q 005078 306 ---------RLQALQSQDRRKILLDVADALE 327 (715)
Q Consensus 306 ---------~w~~~~~~~R~~~L~~~a~~l~ 327 (715)
....+|++.|.++++-+.++.+
T Consensus 101 ~~~~~i~g~~~~~l~p~~r~~~~~~~~~l~e 131 (242)
T 3rag_A 101 QELLAVMGKSTEDLPPADRARVMQVVEKLED 131 (242)
T ss_dssp HHHHHHSSCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCcchhcchhhhhhhhcc
Confidence 2456899999998876655444
No 109
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=23.82 E-value=91 Score=27.58 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=38.8
Q ss_pred hhhhhcccceEEEEeCCcccccCC-----CcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhH
Q 005078 7 SRAFVKDVKRLVVKVGTAVVTRSD-----GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGR 67 (715)
Q Consensus 7 ~~~~~~~~k~~VIKiGGs~l~~~~-----~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~ 67 (715)
.++.+++.|.++.=+.|+++.+.. ............+.|..|++.|++++|+.|+....-+
T Consensus 2 l~~~~~~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~ 67 (162)
T 2p9j_A 2 LRDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLI 67 (162)
T ss_dssp HHHHHHHCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHH
T ss_pred ccccccceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHH
Confidence 456677789999999999986421 1000000012346677788889999999987544433
No 110
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=23.34 E-value=86 Score=28.69 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=29.5
Q ss_pred EEeccCCccccCCC--CCcCccccceeeccchhhHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCC
Q 005078 193 VLLSDVEGLYSGPP--SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGF 262 (715)
Q Consensus 193 i~lTDVdGV~~~dP--~~p~a~~i~~is~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~ 262 (715)
++++|+||++++.- -.++++.+..++..+- .+.....+.|+++.|++++
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~---------------------~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA---------------------IGISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH---------------------HHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH---------------------HHHHHHHHCCCEEEEEeCc
Confidence 67899999998742 1334444444433221 1233445679998888877
No 111
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=22.64 E-value=88 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
.|.++.=+.|+++.+.. .++ ....+.|..+++.|++++|+.|-
T Consensus 4 ~kli~~DlDGTLl~~~~-~i~----~~~~~~l~~l~~~g~~~~iaTGR 46 (246)
T 3f9r_A 4 RVLLLFDVDGTLTPPRL-CQT----DEMRALIKRARGAGFCVGTVGGS 46 (246)
T ss_dssp SEEEEECSBTTTBSTTS-CCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEeCcCCcCCCCC-ccC----HHHHHHHHHHHHCCCEEEEECCC
Confidence 57888889999998643 454 34567788888999999888864
No 112
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=22.09 E-value=57 Score=29.85 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=37.5
Q ss_pred hhhhcccceEEEEeCCcccccCC-----C----cccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH
Q 005078 8 RAFVKDVKRLVVKVGTAVVTRSD-----G----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ 68 (715)
Q Consensus 8 ~~~~~~~k~~VIKiGGs~l~~~~-----~----~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~ 68 (715)
++.+++.|.++.=+.|+++.+.. + .+. ....+.|..|++.|++++|+.|.....-+.
T Consensus 2 ~~~~~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~ 67 (180)
T 1k1e_A 2 QQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFH----VRDGLGIKMLMDADIQVAVLSGRDSPILRR 67 (180)
T ss_dssp --CGGGCCEEEEECTTTTSCSEEEEETTEEEEEEEE----HHHHHHHHHHHHTTCEEEEEESCCCHHHHH
T ss_pred cchhhCCeEEEEeCCCCcCCCCeeeccCcceeeeec----cchHHHHHHHHHCCCeEEEEeCCCcHHHHH
Confidence 44556678999999999987531 1 111 123456778888999999999875544433
No 113
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=21.84 E-value=74 Score=30.50 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=33.7
Q ss_pred ccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCCh
Q 005078 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 62 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg 62 (715)
|.|.++.=+.|+++.+.. .++ ....+.|.++++.|++++++.|-.
T Consensus 4 m~kli~~DlDGTLl~~~~-~i~----~~~~~~l~~l~~~g~~~~i~TGr~ 48 (227)
T 1l6r_A 4 MIRLAAIDVDGNLTDRDR-LIS----TKAIESIRSAEKKGLTVSLLSGNV 48 (227)
T ss_dssp CCCEEEEEHHHHSBCTTS-CBC----HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ceEEEEEECCCCCcCCCC-cCC----HHHHHHHHHHHHCCCEEEEECCCC
Confidence 357899999999998643 454 244567888888999998888653
No 114
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.76 E-value=1.4e+02 Score=23.05 Aligned_cols=31 Identities=3% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHCH
Q 005078 300 ARESSRRLQALQSQDRRKILLDVADALEANE 330 (715)
Q Consensus 300 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~ 330 (715)
++..-..|+.+|.++|..+.......-+++.
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4555667999999999998777666555443
No 115
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.64 E-value=1.6e+02 Score=24.53 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Q 005078 299 AARESSRRLQALQSQDRRKILLDVADALEANESLIKV 335 (715)
Q Consensus 299 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 335 (715)
.++..-..|+.++.+++..+.......-+++..++..
T Consensus 37 isK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 73 (101)
T 1v63_A 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73 (101)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778899999999999999888887777777664
No 116
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.54 E-value=1.2e+02 Score=29.70 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=32.7
Q ss_pred ccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 005078 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSS 60 (715)
Q Consensus 13 ~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhG 60 (715)
+.|.++.=+.|+++.+.. .+. ....+.|+++++.|++++++.|
T Consensus 20 ~~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~iaTG 62 (285)
T 3pgv_A 20 MYQVVASDLDGTLLSPDH-FLT----PYAKETLKLLTARGINFVFATG 62 (285)
T ss_dssp -CCEEEEECCCCCSCTTS-CCC----HHHHHHHHHHHTTTCEEEEECS
T ss_pred cceEEEEeCcCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcC
Confidence 468899999999998643 344 3456677888889999988875
No 117
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=20.52 E-value=1.2e+02 Score=29.94 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=34.3
Q ss_pred cccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 12 ~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
++.|.++.=+.|+++.+....+. ....+.|+++++.|++++++.|=
T Consensus 19 ~~~kli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~v~iaTGR 64 (283)
T 3dao_A 19 GMIKLIATDIDGTLVKDGSLLID----PEYMSVIDRLIDKGIIFVVCSGR 64 (283)
T ss_dssp CCCCEEEECCBTTTBSTTCSCCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCceEEEEeCcCCCCCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 44688999999999976542343 45567788888899998888753
No 118
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=20.25 E-value=1.3e+02 Score=28.44 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=32.5
Q ss_pred cceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 005078 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (715)
Q Consensus 14 ~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGg 61 (715)
.|.++.=+.|+++.+.. .+. ....+.|..+++.|++++++.|-
T Consensus 3 ~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~i~TGR 45 (231)
T 1wr8_A 3 IKAISIDIDGTITYPNR-MIH----EKALEAIRRAESLGIPIMLVTGN 45 (231)
T ss_dssp CCEEEEESTTTTBCTTS-CBC----HHHHHHHHHHHHTTCCEEEECSS
T ss_pred eeEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 57899999999998643 343 34456677788899999888864
No 119
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=21 Score=33.48 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=40.4
Q ss_pred ccccCceEEEEEeCCHHHHHHHH----HhcCCCceeEEEecCHHHHHHHHHhc
Q 005078 593 HEYNSMVCTVEIVDDVRAAIDHI----HQHGSAHTDCIVAEDQKVAETFLCQV 641 (715)
Q Consensus 593 eE~FGPVl~v~~~~~~deAi~~a----N~~~~GL~a~i~t~d~~~~~~~~~~l 641 (715)
||-||+..|..--.+++||++.| .....-|-.|+++.+...+..|.+++
T Consensus 25 ~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~ 77 (178)
T 2ec4_A 25 SSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQM 77 (178)
T ss_dssp HHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHT
T ss_pred HHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHh
Confidence 56778877777678999999999 88889999999998877777777654
No 120
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=20.19 E-value=1.2e+02 Score=29.45 Aligned_cols=71 Identities=6% Similarity=0.081 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCcchhhHhhcCCCCccEEEeecCHHHHHHH
Q 005078 418 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (715)
Q Consensus 418 ~~~~~~ALaaGN~vvlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i 497 (715)
+..++..+.+||=||+|.+...- ...+..++.. -||.|.+++++..++- ...-..+.+.++.+..+-..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~~~--~~s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDVDL--VQSAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHH--HHHHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCHHH--HHHHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 45677889999999999876432 2233445542 3999999999733322 223357888888887776666
Q ss_pred H
Q 005078 498 K 498 (715)
Q Consensus 498 ~ 498 (715)
.
T Consensus 91 ~ 91 (226)
T 3v42_A 91 L 91 (226)
T ss_dssp H
T ss_pred c
Confidence 3
No 121
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=20.17 E-value=79 Score=28.85 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=38.4
Q ss_pred hhhcccceEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhh
Q 005078 9 AFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLR 71 (715)
Q Consensus 9 ~~~~~~k~~VIKiGGs~l~~~~~~~~~~~l~~l~~~I~~l~~~G~~vviVhGgg~~i~~~~l~ 71 (715)
+.+.+...+++-..|..+++ ..+++.|..+...|-+++.|.||.-.++.....
T Consensus 62 ~~i~~~~vi~Ld~~Gk~~sS----------~~fA~~l~~~~~~g~~i~FvIGG~~Gl~~~v~~ 114 (155)
T 1ns5_A 62 AAAGKNRIVTLDIPGKPWDT----------PQLAAELERWKLDGRDVSLLIGGPEGLSPACKA 114 (155)
T ss_dssp HHHTTSEEEEEEEEEECCCH----------HHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHH
T ss_pred HhcCCCcEEEEcCCCCcCCH----------HHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 34444446677788888875 467888888888887899999987767665443
Done!