Query 005082
Match_columns 715
No_of_seqs 335 out of 1480
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 17:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1E-14 2.2E-19 139.3 11.9 85 367-452 28-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.3E-13 9.4E-18 141.4 11.9 82 370-452 266-351 (352)
3 KOG0125 Ataxin 2-binding prote 99.4 2.4E-13 5.2E-18 143.6 7.8 82 370-452 93-176 (376)
4 KOG0111 Cyclophilin-type pepti 99.4 1.1E-13 2.3E-18 139.9 3.3 100 371-488 8-111 (298)
5 KOG0149 Predicted RNA-binding 99.4 3.7E-13 8.1E-18 137.1 6.6 79 369-449 8-90 (247)
6 KOG0153 Predicted RNA-binding 99.4 1.1E-12 2.4E-17 139.4 9.2 81 367-450 222-303 (377)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.3E-12 4.9E-17 135.9 10.7 78 373-451 3-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.3 2.8E-12 6.1E-17 103.8 8.0 67 376-443 1-70 (70)
9 PLN03120 nucleic acid binding 99.3 3.5E-12 7.6E-17 132.7 10.2 76 373-450 4-80 (260)
10 TIGR01659 sex-lethal sex-letha 99.3 2.8E-12 6.1E-17 138.5 9.3 82 371-453 191-278 (346)
11 TIGR01659 sex-lethal sex-letha 99.3 4E-12 8.7E-17 137.4 9.8 80 370-450 104-187 (346)
12 TIGR01645 half-pint poly-U bin 99.3 1.3E-11 2.9E-16 141.3 10.0 130 318-450 148-284 (612)
13 TIGR01645 half-pint poly-U bin 99.2 3.1E-11 6.7E-16 138.4 11.6 76 372-448 106-185 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.2 3.8E-11 8.2E-16 135.6 10.3 84 371-455 283-369 (562)
15 PLN03121 nucleic acid binding 99.2 1E-10 2.2E-15 120.6 10.8 78 371-450 3-81 (243)
16 KOG0148 Apoptosis-promoting RN 99.2 7.4E-11 1.6E-15 122.5 9.4 129 319-453 104-241 (321)
17 PLN03213 repressor of silencin 99.2 5.7E-11 1.2E-15 130.7 8.9 78 372-450 9-88 (759)
18 smart00362 RRM_2 RNA recogniti 99.2 2.1E-10 4.5E-15 90.7 9.3 70 375-445 1-72 (72)
19 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.6E-15 95.9 8.1 67 376-443 1-70 (70)
20 TIGR01622 SF-CC1 splicing fact 99.2 1.1E-10 2.4E-15 128.0 10.2 79 371-450 184-266 (457)
21 KOG0124 Polypyrimidine tract-b 99.1 7.2E-11 1.6E-15 126.3 7.1 164 375-567 115-290 (544)
22 KOG4207 Predicted splicing fac 99.1 7.8E-11 1.7E-15 118.6 6.8 80 370-450 10-93 (256)
23 COG0724 RNA-binding proteins ( 99.1 2.7E-10 5.9E-15 109.7 9.7 76 373-449 115-194 (306)
24 KOG0113 U1 small nuclear ribon 99.1 1.7E-10 3.7E-15 121.1 8.8 83 371-454 99-185 (335)
25 TIGR01628 PABP-1234 polyadenyl 99.1 2.3E-10 5E-15 129.3 10.0 74 375-449 2-79 (562)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.7E-10 8E-15 126.3 11.4 80 370-450 272-351 (481)
27 KOG0107 Alternative splicing f 99.1 2.1E-10 4.6E-15 113.1 7.9 78 372-451 9-86 (195)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.1 5E-10 1.1E-14 124.3 11.8 79 371-450 293-375 (509)
29 KOG0148 Apoptosis-promoting RN 99.1 1.8E-10 3.9E-15 119.7 6.8 77 374-451 63-143 (321)
30 KOG0144 RNA-binding protein CU 99.1 1.5E-10 3.2E-15 126.1 6.3 85 371-456 122-212 (510)
31 TIGR01622 SF-CC1 splicing fact 99.1 4.9E-10 1.1E-14 122.9 10.3 79 370-450 86-168 (457)
32 KOG0122 Translation initiation 99.1 4.8E-10 1E-14 115.2 9.1 77 373-450 189-269 (270)
33 smart00360 RRM RNA recognition 99.1 7.2E-10 1.6E-14 87.1 8.1 63 383-445 5-71 (71)
34 PF13893 RRM_5: RNA recognitio 99.1 6.6E-10 1.4E-14 88.8 8.0 56 391-447 1-56 (56)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 5.8E-10 1.3E-14 124.8 10.4 75 373-450 2-78 (481)
36 KOG0126 Predicted RNA-binding 99.0 1.2E-10 2.5E-15 115.6 3.9 79 372-451 34-116 (219)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 7.4E-10 1.6E-14 126.7 10.7 77 371-452 231-309 (578)
38 cd00590 RRM RRM (RNA recogniti 99.0 2.4E-09 5.2E-14 85.0 9.4 71 375-446 1-74 (74)
39 TIGR01648 hnRNP-R-Q heterogene 99.0 9.7E-10 2.1E-14 125.8 9.6 78 371-449 56-137 (578)
40 KOG0131 Splicing factor 3b, su 99.0 6.8E-10 1.5E-14 110.1 5.6 78 372-450 8-89 (203)
41 KOG0121 Nuclear cap-binding pr 98.9 1.2E-09 2.5E-14 103.5 6.2 78 370-448 33-114 (153)
42 smart00361 RRM_1 RNA recogniti 98.9 2.6E-09 5.6E-14 89.8 7.6 57 388-444 2-69 (70)
43 KOG4205 RNA-binding protein mu 98.9 8.6E-10 1.9E-14 117.9 4.3 81 372-454 5-89 (311)
44 KOG0108 mRNA cleavage and poly 98.9 3.1E-09 6.7E-14 118.1 8.8 79 374-453 19-101 (435)
45 KOG0147 Transcriptional coacti 98.9 2.3E-09 4.9E-14 119.8 6.8 84 371-456 277-364 (549)
46 KOG0114 Predicted RNA-binding 98.8 1.9E-08 4.1E-13 92.5 8.1 80 370-450 15-95 (124)
47 KOG0127 Nucleolar protein fibr 98.8 1.4E-08 2.9E-13 113.6 8.4 80 373-453 117-199 (678)
48 TIGR01642 U2AF_lg U2 snRNP aux 98.8 2.3E-08 5E-13 111.1 9.4 78 368-449 170-259 (509)
49 KOG4205 RNA-binding protein mu 98.7 9.5E-09 2.1E-13 110.0 5.6 82 372-455 96-181 (311)
50 KOG0132 RNA polymerase II C-te 98.7 2.7E-08 5.8E-13 114.7 8.9 84 368-454 416-499 (894)
51 KOG0117 Heterogeneous nuclear 98.7 2.4E-08 5.2E-13 109.6 8.1 78 371-449 81-163 (506)
52 KOG0117 Heterogeneous nuclear 98.7 4.5E-08 9.8E-13 107.5 8.4 78 371-453 257-334 (506)
53 KOG0105 Alternative splicing f 98.7 3.5E-08 7.6E-13 98.5 6.8 80 370-450 3-83 (241)
54 KOG0144 RNA-binding protein CU 98.6 4.9E-08 1.1E-12 106.8 7.4 85 368-453 29-120 (510)
55 KOG0145 RNA-binding protein EL 98.6 1.5E-07 3.2E-12 98.0 9.1 77 373-450 278-358 (360)
56 KOG0127 Nucleolar protein fibr 98.6 6.3E-08 1.4E-12 108.4 6.2 79 374-453 6-88 (678)
57 KOG0123 Polyadenylate-binding 98.6 1.2E-07 2.6E-12 103.9 8.0 117 320-453 38-156 (369)
58 KOG0145 RNA-binding protein EL 98.6 1.9E-07 4.1E-12 97.2 9.0 80 371-451 39-122 (360)
59 KOG0130 RNA-binding protein RB 98.6 8.1E-08 1.8E-12 91.9 5.6 86 366-452 65-154 (170)
60 KOG4212 RNA-binding protein hn 98.5 1.6E-07 3.5E-12 102.9 8.1 80 368-448 39-122 (608)
61 KOG4206 Spliceosomal protein s 98.4 4.9E-07 1.1E-11 92.4 7.7 84 371-455 7-95 (221)
62 KOG0124 Polypyrimidine tract-b 98.3 2.5E-07 5.4E-12 99.7 3.4 124 319-448 155-288 (544)
63 KOG0109 RNA-binding protein LA 98.3 1E-06 2.2E-11 93.1 6.2 74 375-453 4-77 (346)
64 KOG0131 Splicing factor 3b, su 98.3 9.6E-07 2.1E-11 88.2 5.1 82 371-453 94-180 (203)
65 KOG0123 Polyadenylate-binding 98.3 2E-06 4.3E-11 94.4 8.0 73 375-451 3-76 (369)
66 KOG0110 RNA-binding protein (R 98.2 2.5E-06 5.5E-11 98.1 8.1 72 376-448 518-596 (725)
67 KOG0146 RNA-binding protein ET 98.2 2.4E-06 5.2E-11 89.4 6.9 81 372-453 18-104 (371)
68 KOG0109 RNA-binding protein LA 98.2 1.7E-06 3.6E-11 91.5 5.7 80 370-454 75-154 (346)
69 KOG0415 Predicted peptidyl pro 98.2 2.5E-06 5.3E-11 92.0 6.9 78 371-449 237-318 (479)
70 KOG4454 RNA binding protein (R 98.2 1.2E-06 2.7E-11 89.5 3.6 84 366-451 2-88 (267)
71 KOG0110 RNA-binding protein (R 98.2 1.6E-06 3.5E-11 99.7 4.8 79 373-452 613-695 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.2E-06 1.1E-10 93.5 6.6 77 372-449 404-484 (940)
73 KOG4208 Nucleolar RNA-binding 98.0 1E-05 2.2E-10 82.1 6.9 76 374-450 50-130 (214)
74 KOG0146 RNA-binding protein ET 98.0 5.3E-06 1.1E-10 86.9 4.2 78 374-452 286-367 (371)
75 KOG0116 RasGAP SH3 binding pro 97.9 2.1E-05 4.5E-10 87.7 6.6 73 374-448 289-365 (419)
76 KOG0533 RRM motif-containing p 97.7 8.4E-05 1.8E-09 77.7 8.3 80 368-448 78-160 (243)
77 KOG4209 Splicing factor RNPS1, 97.7 3.9E-05 8.5E-10 79.5 5.7 78 371-450 99-180 (231)
78 KOG0106 Alternative splicing f 97.7 2.5E-05 5.4E-10 80.3 4.1 72 374-450 2-73 (216)
79 KOG4212 RNA-binding protein hn 97.7 5.7E-05 1.2E-09 83.5 6.9 76 368-446 531-607 (608)
80 KOG2135 Proteins containing th 97.6 0.0001 2.3E-09 82.2 6.0 82 366-450 365-446 (526)
81 KOG0226 RNA-binding proteins [ 97.5 6.2E-05 1.3E-09 78.7 3.9 84 374-458 191-278 (290)
82 KOG0151 Predicted splicing reg 97.5 0.00024 5.2E-09 82.4 7.7 81 368-449 169-256 (877)
83 KOG4660 Protein Mei2, essentia 97.4 0.00011 2.4E-09 83.3 3.1 73 369-443 71-143 (549)
84 KOG1190 Polypyrimidine tract-b 97.2 0.0011 2.4E-08 73.2 8.1 75 373-448 297-371 (492)
85 PF00642 zf-CCCH: Zinc finger 97.1 0.0001 2.2E-09 52.3 -0.2 23 231-253 3-26 (27)
86 KOG4211 Splicing factor hnRNP- 97.0 0.0019 4.2E-08 72.7 8.0 75 373-450 10-86 (510)
87 KOG0147 Transcriptional coacti 96.9 0.00044 9.5E-09 78.4 2.1 75 373-449 179-257 (549)
88 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0032 6.9E-08 51.3 5.4 52 374-429 2-53 (53)
89 KOG1548 Transcription elongati 96.7 0.012 2.7E-07 64.1 11.3 77 371-448 132-219 (382)
90 smart00356 ZnF_C3H1 zinc finge 96.6 0.0011 2.3E-08 45.9 1.7 22 232-253 5-26 (27)
91 KOG4211 Splicing factor hnRNP- 96.5 0.011 2.4E-07 66.8 9.5 76 371-448 101-180 (510)
92 COG5175 MOT2 Transcriptional r 96.5 0.0056 1.2E-07 66.5 6.6 81 369-449 110-202 (480)
93 KOG0106 Alternative splicing f 96.2 0.0031 6.8E-08 65.1 3.1 68 373-445 99-166 (216)
94 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.023 5E-07 52.3 7.5 63 379-447 13-89 (100)
95 KOG1457 RNA binding protein (c 96.0 0.023 5E-07 59.2 8.2 81 372-453 33-121 (284)
96 KOG1548 Transcription elongati 96.0 0.03 6.5E-07 61.2 9.0 85 368-452 260-354 (382)
97 KOG4210 Nuclear localization s 95.9 0.0051 1.1E-07 65.8 3.0 81 371-453 182-267 (285)
98 PF04059 RRM_2: RNA recognitio 95.9 0.036 7.8E-07 50.8 7.9 74 374-448 2-85 (97)
99 KOG4307 RNA binding protein RB 95.8 0.012 2.6E-07 68.8 5.3 81 371-452 432-516 (944)
100 KOG1456 Heterogeneous nuclear 95.6 0.063 1.4E-06 59.3 9.9 78 372-450 286-363 (494)
101 KOG0120 Splicing factor U2AF, 95.6 0.029 6.4E-07 64.2 7.5 61 389-449 424-491 (500)
102 PF00658 PABP: Poly-adenylate 95.5 0.013 2.8E-07 51.0 3.4 50 8-60 22-71 (72)
103 PF11608 Limkain-b1: Limkain b 95.3 0.049 1.1E-06 49.2 6.5 70 375-451 4-78 (90)
104 smart00517 PolyA C-terminal do 95.1 0.023 5E-07 48.6 3.6 50 8-60 11-60 (64)
105 PF08777 RRM_3: RNA binding mo 94.9 0.033 7.1E-07 51.4 4.5 56 376-434 4-59 (105)
106 KOG0120 Splicing factor U2AF, 94.8 0.022 4.9E-07 65.1 3.7 80 371-451 287-370 (500)
107 PF14608 zf-CCCH_2: Zinc finge 94.8 0.017 3.7E-07 38.2 1.5 19 233-253 1-19 (19)
108 KOG2314 Translation initiation 94.7 0.034 7.3E-07 63.9 4.6 58 389-446 79-140 (698)
109 PF08952 DUF1866: Domain of un 94.7 0.1 2.2E-06 51.3 7.3 74 371-449 25-106 (146)
110 KOG1855 Predicted RNA-binding 94.4 0.023 5.1E-07 63.4 2.4 64 371-435 229-309 (484)
111 KOG0129 Predicted RNA-binding 94.3 0.11 2.5E-06 59.2 7.5 78 369-451 255-342 (520)
112 KOG0129 Predicted RNA-binding 94.0 0.14 3E-06 58.6 7.6 87 358-448 357-452 (520)
113 KOG2185 Predicted RNA-processi 93.8 0.024 5.2E-07 63.0 1.0 26 230-255 139-164 (486)
114 KOG1677 CCCH-type Zn-finger pr 93.8 0.031 6.8E-07 59.9 1.8 28 227-254 173-201 (332)
115 KOG1995 Conserved Zn-finger pr 93.7 0.077 1.7E-06 58.2 4.6 84 369-453 62-157 (351)
116 KOG2202 U2 snRNP splicing fact 93.0 0.039 8.4E-07 58.3 1.0 59 389-447 83-145 (260)
117 KOG4206 Spliceosomal protein s 91.8 0.56 1.2E-05 48.9 7.6 76 370-447 143-219 (221)
118 KOG3152 TBP-binding protein, a 91.5 0.1 2.2E-06 55.3 2.0 67 374-441 75-157 (278)
119 PF04847 Calcipressin: Calcipr 89.8 0.82 1.8E-05 46.4 6.6 61 387-449 8-70 (184)
120 KOG1457 RNA binding protein (c 89.8 0.35 7.6E-06 50.7 4.0 68 368-436 205-272 (284)
121 KOG1996 mRNA splicing factor [ 88.1 1.1 2.3E-05 48.7 6.4 62 388-449 300-366 (378)
122 KOG4849 mRNA cleavage factor I 88.0 0.55 1.2E-05 51.9 4.1 74 374-448 81-160 (498)
123 PF15023 DUF4523: Protein of u 87.9 1.5 3.3E-05 43.4 6.7 74 370-447 83-159 (166)
124 KOG1456 Heterogeneous nuclear 87.8 2 4.3E-05 48.1 8.2 77 373-450 120-199 (494)
125 PF08675 RNA_bind: RNA binding 86.6 2.6 5.7E-05 38.3 6.9 56 372-433 8-63 (87)
126 KOG1039 Predicted E3 ubiquitin 86.6 0.25 5.5E-06 54.5 0.7 22 232-253 9-30 (344)
127 KOG2068 MOT2 transcription fac 86.2 0.28 6.2E-06 53.6 0.8 80 371-450 75-163 (327)
128 KOG4676 Splicing factor, argin 85.8 1.2 2.5E-05 50.0 5.2 75 375-451 9-90 (479)
129 KOG4285 Mitotic phosphoprotein 85.2 1.4 3.1E-05 48.0 5.4 61 387-450 209-270 (350)
130 KOG4307 RNA binding protein RB 84.0 3 6.4E-05 49.8 7.6 66 381-446 874-943 (944)
131 PF10309 DUF2414: Protein of u 83.9 4 8.7E-05 34.9 6.5 55 373-432 5-62 (62)
132 KOG1190 Polypyrimidine tract-b 81.7 3.6 7.9E-05 46.5 6.9 78 370-448 411-489 (492)
133 KOG2193 IGF-II mRNA-binding pr 80.9 3.1 6.7E-05 47.2 6.0 76 374-452 2-78 (584)
134 KOG0128 RNA-binding protein SA 80.2 0.23 4.9E-06 59.7 -3.1 73 371-444 665-741 (881)
135 KOG2891 Surface glycoprotein [ 76.7 2.4 5.3E-05 45.8 3.5 36 373-408 149-195 (445)
136 KOG0112 Large RNA-binding prot 76.2 3 6.4E-05 51.0 4.4 82 370-454 452-535 (975)
137 KOG0128 RNA-binding protein SA 75.1 1.5 3.2E-05 53.1 1.6 75 373-448 736-813 (881)
138 KOG1365 RNA-binding protein Fu 73.8 3.8 8.3E-05 46.0 4.2 92 354-446 135-239 (508)
139 KOG0105 Alternative splicing f 72.0 11 0.00024 38.9 6.7 72 373-448 115-188 (241)
140 KOG2494 C3H1-type Zn-finger pr 69.0 1.6 3.5E-05 47.9 0.1 23 231-253 37-60 (331)
141 KOG0112 Large RNA-binding prot 68.3 1.2 2.6E-05 54.1 -1.1 77 370-447 369-448 (975)
142 KOG0115 RNA-binding protein p5 68.2 4.6 9.9E-05 43.3 3.2 74 374-448 32-112 (275)
143 KOG1365 RNA-binding protein Fu 67.4 4.8 0.0001 45.3 3.3 75 373-448 280-360 (508)
144 COG5084 YTH1 Cleavage and poly 66.7 2.9 6.2E-05 45.4 1.4 24 231-254 134-158 (285)
145 KOG1763 Uncharacterized conser 66.1 2.2 4.8E-05 46.3 0.4 22 232-253 93-114 (343)
146 KOG2416 Acinus (induces apopto 65.4 6 0.00013 46.6 3.7 80 366-448 437-520 (718)
147 PF03880 DbpA: DbpA RNA bindin 65.3 18 0.0004 31.1 5.8 58 385-447 12-74 (74)
148 KOG1040 Polyadenylation factor 58.7 5.9 0.00013 43.7 2.1 26 228-253 74-99 (325)
149 PF07576 BRAP2: BRCA1-associat 54.5 67 0.0015 30.3 8.0 65 375-439 14-81 (110)
150 COG5152 Uncharacterized conser 54.2 5.1 0.00011 41.6 0.6 25 229-253 139-164 (259)
151 KOG1595 CCCH-type Zn-finger pr 53.4 6.7 0.00015 45.7 1.4 25 229-253 234-258 (528)
152 KOG1492 C3H1-type Zn-finger pr 52.6 5.9 0.00013 41.7 0.8 21 233-253 208-229 (377)
153 KOG4210 Nuclear localization s 51.8 8.2 0.00018 41.8 1.7 80 371-451 86-169 (285)
154 PF10650 zf-C3H1: Putative zin 50.1 9 0.0002 27.0 1.1 19 233-252 2-21 (23)
155 KOG1040 Polyadenylation factor 44.2 8.8 0.00019 42.5 0.5 26 229-254 132-157 (325)
156 KOG2591 c-Mpl binding protein, 40.4 35 0.00075 40.4 4.4 71 371-444 172-246 (684)
157 KOG1677 CCCH-type Zn-finger pr 37.1 17 0.00036 39.3 1.3 27 227-253 128-156 (332)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 36.9 57 0.0012 32.9 4.9 67 372-439 6-82 (176)
159 PF15513 DUF4651: Domain of un 31.7 61 0.0013 28.0 3.5 18 389-406 9-26 (62)
160 COG5252 Uncharacterized conser 30.3 18 0.0004 38.5 0.2 22 232-253 86-107 (299)
161 PF11767 SET_assoc: Histone ly 30.1 3.2E+02 0.0069 23.8 7.6 58 382-444 8-65 (66)
162 COG5084 YTH1 Cleavage and poly 29.7 26 0.00057 38.2 1.3 24 230-253 103-126 (285)
163 KOG4454 RNA binding protein (R 29.3 12 0.00025 39.7 -1.3 62 383-444 93-157 (267)
164 KOG1813 Predicted E3 ubiquitin 28.7 19 0.00042 39.4 0.1 25 229-253 184-209 (313)
165 KOG4574 RNA-binding protein (c 25.2 42 0.0009 41.5 2.0 76 371-449 296-373 (1007)
166 KOG2333 Uncharacterized conser 24.8 35 0.00075 39.9 1.2 25 233-257 116-141 (614)
167 KOG1492 C3H1-type Zn-finger pr 23.4 31 0.00066 36.6 0.4 23 232-255 262-284 (377)
168 KOG2494 C3H1-type Zn-finger pr 21.5 43 0.00093 37.2 1.1 23 230-253 70-92 (331)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1e-14 Score=139.34 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
++....+++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 28 ~~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 28 GSLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455566789999988 678999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 005082 443 LVKPYKEKGK 452 (715)
Q Consensus 443 ~Vk~A~eK~k 452 (715)
+|+++.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=4.3e-13 Score=141.36 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||++| ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.||+..|+||+|+|.
T Consensus 266 ~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 266 DGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344568999999 578999999999999999999999987 689999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005082 446 PYKEKGK 452 (715)
Q Consensus 446 ~A~eK~k 452 (715)
+...|.+
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9987764
No 3
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=143.57 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
...-+.|||.+| .|+++|-||+.+|++||+|.+|.|+.. -+||||||||++.++|++|-++|+++.|.||+|+|..+
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345688999988 799999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
+.|..
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 88743
No 4
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-13 Score=139.93 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
-..||||||.+++ .++|.-|...|-.||.|.+|.||.| ++||||||+|...|+|..|+++||..+|+||.|+|..
T Consensus 8 ~~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4579999999965 7999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred cccCCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccc
Q 005082 447 YKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQL 488 (715)
Q Consensus 447 A~eK~k~~~~~r~qqq~~erG~~s~~~sP~g~D~r~pfd~~~ 488 (715)
+++.+-... ...|.|.| ++|+..+-
T Consensus 87 AkP~kikeg----------------sqkPvWAD-DdWlkk~~ 111 (298)
T KOG0111|consen 87 AKPEKIKEG----------------SQKPVWAD-DDWLKKQQ 111 (298)
T ss_pred cCCccccCC----------------CCCCcccC-cHHHHHhc
Confidence 987543211 12467777 66776554
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.7e-13 Score=137.11 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.+..=.+||||++ .|.++.|+|++||++||+|++..|+.| |+||||||||.+.|.|.+|++. ...+|+||+..|
T Consensus 8 ~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 3455679999999 699999999999999999999999998 9999999999999999999998 678899999999
Q ss_pred Eeccc
Q 005082 445 KPYKE 449 (715)
Q Consensus 445 k~A~e 449 (715)
+.+.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98753
No 6
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=139.41 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhC-CCceEcCeEEEEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~GR~I~Vk 445 (715)
+..+...+|+||+++.+ .++|.+|+++|.+||+|+.|+|.. .+++|||+|.+.+.|+.|.++. |...|+|++|.|+
T Consensus 222 pPeD~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 35568889999999977 899999999999999999999988 7889999999999999998765 7788999999999
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 98773
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=2.3e-12 Score=135.95 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=73.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
..+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 679999999 678999999999999999999999986 689999999999999999999999999999999999987
Q ss_pred cCC
Q 005082 449 EKG 451 (715)
Q Consensus 449 eK~ 451 (715)
++.
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=2.8e-12 Score=103.79 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 376 IYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
|||+++ +.++|+++|+++|++||.|..|.|+.+ +.+|||||+|.+.++|++|++.|+++.|+|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799988 578999999999999999999999884 7899999999999999999999999999999985
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.5e-12 Score=132.68 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
.|+|||++| ++++||++|+++|+.||+|++|+|+.| .++|||||+|.++++|+.||. ||++.|.||.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 689999998 578999999999999999999999998 478999999999999999996 7999999999999997644
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.33 E-value=2.8e-12 Score=138.53 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcC--eEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~V 444 (715)
..+++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|++ ++|+|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 35678999988 678999999999999999999999986 678999999999999999999999999977 78999
Q ss_pred EecccCCCC
Q 005082 445 KPYKEKGKV 453 (715)
Q Consensus 445 k~A~eK~k~ 453 (715)
+++.++.+.
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 999876554
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=4e-12 Score=137.35 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||++.|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456789999988 678999999999999999999999987 789999999999999999999999999999999999
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88654
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=1.3e-11 Score=141.34 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=92.5
Q ss_pred chhhhhHHHhhhhHHHHHHHH-HHhhhhhhhhhcccCccc--ccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHh
Q 005082 318 PKSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSRLE--RNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNY 394 (715)
Q Consensus 318 ~k~~~~llq~~~~esQR~~~~-~a~~l~ed~~k~g~~R~~--RsDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~ 394 (715)
.|+|+|+-.....+++++... +...+.....+.++.... .....+. ........++|||+++ +.++++++|+++
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~--~~~~~~~~~rLfVgnL-p~~vteedLk~l 224 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM--VQEEAKKFNRIYVASV-HPDLSETDIKSV 224 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccccc--ccccccccceEEeecC-CCCCCHHHHHHH
Confidence 366777777667777776542 222333333333221100 0000000 0011234579999998 578999999999
Q ss_pred hccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 395 FSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 395 FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++...
T Consensus 225 Fs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 225 FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999986 68999999999999999999999999999999999988754
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=3.1e-11 Score=138.44 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=70.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+||+|+|++.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999988 789999999999999999999999986 79999999999999999999999999999999999864
Q ss_pred c
Q 005082 448 K 448 (715)
Q Consensus 448 ~ 448 (715)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=3.8e-11 Score=135.63 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
....+|||+++ ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44568999988 568999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCCCCch
Q 005082 448 KEKGKVPD 455 (715)
Q Consensus 448 ~eK~k~~~ 455 (715)
..|..+..
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 87765443
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=1e-10 Score=120.59 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
+...+|||+++ ++++||++|+++|+.||+|++|+|++| +.+|||||+|.+++.++.|+. |++..|.+++|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 45589999998 789999999999999999999999998 678999999999999999995 599999999999998764
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
-
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.4e-11 Score=122.53 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=93.9
Q ss_pred hhhhhHHHhhhhHHHHHHHH-HHhhhhhhhhhcccCcccccccccCCCCC--------CCCCCcceEEEcCCCCCCCCHH
Q 005082 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSRLERNDFSINGSAG--------IVNPASRQIYLTFPADSTFREE 389 (715)
Q Consensus 319 k~~~~llq~~~~esQR~~~~-~a~~l~ed~~k~g~~R~~RsDF~~~g~~g--------s~~~~sRtIYVg~~~~~~~TEe 389 (715)
|.|+|+..-...++++++.+ .+--||-+..+.-- .-|.. ..|++.+ ...+.+.++|||+++. -+||+
T Consensus 104 KGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW--ATRKp-~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~-~lte~ 179 (321)
T KOG0148|consen 104 KGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW--ATRKP-SEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS-GLTED 179 (321)
T ss_pred cceeEEeccchHHHHHHHHHhCCeeeccceeeccc--cccCc-cccCCCCccHHHHhccCCCCCceEEeCCcCc-cccHH
Confidence 55666655446677787754 01112333222210 01111 1122221 4467889999999966 68999
Q ss_pred HHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCCCC
Q 005082 390 DVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (715)
Q Consensus 390 dLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~k~ 453 (715)
++|+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+++|.|..|++.|-++-...
T Consensus 180 ~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 180 LMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999988 6899999999999999999999999999999999998776543
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=99.17 E-value=5.7e-11 Score=130.69 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCH--HHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~--E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
..-+||||+| .|++++++|+..|++||.|.+|.||+...||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999998 7899999999999999999999999887799999999987 789999999999999999999999876
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=2.1e-10 Score=90.70 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
+|||+++ +..+++++|+++|.+||+|..|++..+ ..+|+|||+|.+.++|++|++.++++.+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899988 567899999999999999999999875 367999999999999999999999999999999874
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1.2e-10 Score=95.91 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 376 IYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
|||++++ +++++++|+++|+.||.|..|++.++ +.+|+|||+|.+.++|++|++.++++.|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999885 57999999999999999999999985 4589999999999999999999888999999885
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1.1e-10 Score=127.99 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+..++|||+++. +.+||++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 447999999984 68999999999999999999999976 6789999999999999999999999999999999999
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8744
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7.2e-11 Score=126.26 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=113.3
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
.||||.+ .|.+.|+.||..|..||+|.+|.+-.| ++|||+||+|+-+|.|+.|++.||+..+.||.|+|.+-..-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 4788866 789999999999999999999999776 99999999999999999999999999999999999843322
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Q 005082 451 GKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLD 530 (715)
Q Consensus 451 ~k~~~~~r~qqq~~erG~~s~~~sP~g~D~r~pfd~~~G~Rm~~nn~~eml~RrklEEq~elqqAiElqrRrL~~lql~d 530 (715)
..-+.---.-+++.. .-.|+|..+.|.-| -| .+++..+|..+.-+.+.---+
T Consensus 194 pQAQpiID~vqeeAk----------------------~fnRiYVaSvHpDL-----Se-~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK----------------------KFNRIYVASVHPDL-----SE-TDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred cccchHHHHHHHHHH----------------------hhheEEeeecCCCc-----cH-HHHHHHHHhhcceeeEEeecc
Confidence 111110000111111 11355555445322 12 345566776655443322222
Q ss_pred ccccccc--------ccccCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005082 531 VKKHHHH--------RALSTGSPIPSPTHSPNIFHQNLVFPPLHS 567 (715)
Q Consensus 531 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (715)
-..+.|+ +.+|+-.+|+.++-|++.++--++.-|.-+
T Consensus 246 pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 246 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 2333455 577888999999999999988887765543
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.12 E-value=7.8e-11 Score=118.65 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
...-.+|-|-|| .+.++.++|+.+|++||.|-+|.||.| ++||||||-|.+..+|+.|++.|++..|+|+.|.|.
T Consensus 10 v~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 334457778777 689999999999999999999999998 899999999999999999999999999999999998
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
.+...
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 87644
No 23
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=109.72 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.9
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.++|||+++ ++++|+++|+++|.+||.|..|+|+.| ++||||||+|.+.+++..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999998 589999999999999999999999886 899999999999999999999999999999999999965
Q ss_pred c
Q 005082 449 E 449 (715)
Q Consensus 449 e 449 (715)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.7e-10 Score=121.13 Aligned_cols=83 Identities=13% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
--=+||||+.+ .++++|..|++.|+.||+|+.|+||+| ++||||||+|.++.++..|.+..++..|+|++|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34489999988 689999999999999999999999997 9999999999999999999999999999999999987
Q ss_pred cccCCCCc
Q 005082 447 YKEKGKVP 454 (715)
Q Consensus 447 A~eK~k~~ 454 (715)
-..+....
T Consensus 178 ERgRTvkg 185 (335)
T KOG0113|consen 178 ERGRTVKG 185 (335)
T ss_pred cccccccc
Confidence 66554433
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.3e-10 Score=129.31 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
+|||++| +.++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+|+..|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999998 678999999999999999999999986 6789999999999999999999999999999999988753
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=3.7e-10 Score=126.33 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
...+.+|||+++....+|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|+.|++.||++.|.|++|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3567899999997667999999999999999999999986 579999999999999999999999999999999998765
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
+
T Consensus 351 ~ 351 (481)
T TIGR01649 351 Q 351 (481)
T ss_pred c
Confidence 4
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=113.08 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=71.6
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~ 451 (715)
...+|||++| ..++++.+|+..|+.||+|..|.|-. ...|||||+|+++.+|+.|+..|++..|||.+|+|...+.+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3689999998 57899999999999999999999977 688999999999999999999999999999999998876554
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=5e-10 Score=124.28 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++.+|+++|+++|++||.|..|+|+++ +++|||||+|.+.+.|..|++.||+..|.|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999998 678999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.8e-10 Score=119.73 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
--++|+++ ...++-|+||+.|.+||+|.+++|++| |+||||||.|-+.++|+.|+..||++.|.+|.|+-.|+..
T Consensus 63 fhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 35788877 457899999999999999999999998 9999999999999999999999999999999999999988
Q ss_pred CC
Q 005082 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 76
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.5e-10 Score=126.13 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCc-eE--cCeEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDARVLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~-~L--~GR~I~V 444 (715)
...|++||+.+ ...+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+. .+ |..+|.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 45789999977 568999999999999999999999997 99999999999999999999999974 44 5578999
Q ss_pred EecccCCCCchH
Q 005082 445 KPYKEKGKVPDK 456 (715)
Q Consensus 445 k~A~eK~k~~~~ 456 (715)
|++..++.+..+
T Consensus 201 kFADtqkdk~~~ 212 (510)
T KOG0144|consen 201 KFADTQKDKDGK 212 (510)
T ss_pred EecccCCCchHH
Confidence 999876655443
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=4.9e-10 Score=122.88 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||++| ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||. |++..|.|+.|.|+
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 466799999998 578999999999999999999999986 689999999999999999998 59999999999998
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
....+
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.8e-10 Score=115.23 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=72.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
..+|-|+++. -+++|++|+++|.+||.|.+|.|.+| .+||||||+|.+.++|.+|++.||++-+++-.|+|.|++
T Consensus 189 ~~tvRvtNLs-ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLS-EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCc-cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5689999985 57999999999999999999999987 899999999999999999999999999999999999998
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 76
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=7.2e-10 Score=87.13 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 383 ~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
++.+++++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|++.++++.+.|+.|.|.
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 577899999999999999999999875 458999999999999999999999999999999873
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=6.6e-10 Score=88.80 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.0
Q ss_pred HHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 391 Lre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
|.++|++||+|++|.+...+ +++|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999874
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.05 E-value=5.8e-10 Score=124.77 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHh--CCCceEcCeEEEEEecccC
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~--LNg~~L~GR~I~Vk~A~eK 450 (715)
+|+|||+++ +++++|++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++. +++..|.|+.|.|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 789999988 67899999999999999999999997 789999999999999999986 4789999999999998654
No 36
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=1.2e-10 Score=115.58 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.+--||||++ ++.+||.||--+|++||+|++|.+++| +++||||+.|++..+.-.|+++||+..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3567999988 799999999999999999999999998 99999999999999999999999999999999999876
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5433
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=7.4e-10 Score=126.74 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccC--CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqF--GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
...++|||+++ +++++|++|+++|++| |+|++|+++ |+||||+|.+.++|++|++.||++.|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 44689999988 6789999999999999 999999886 4799999999999999999999999999999999998
Q ss_pred cCCC
Q 005082 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7654
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.4e-09 Score=85.03 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+|||+++ ++.+++++|+++|..||.|..+.+..+ +.+|+|||+|.+.+.|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899988 456899999999999999999999886 3589999999999999999999999999999999863
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.00 E-value=9.7e-10 Score=125.81 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~ 446 (715)
....+|||++| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34579999988 578999999999999999999999987 89999999999999999999999998885 78877766
Q ss_pred ccc
Q 005082 447 YKE 449 (715)
Q Consensus 447 A~e 449 (715)
+.+
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 543
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.96 E-value=6.8e-10 Score=110.12 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=72.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
+..|||||++ +..++|+.|.++|-+.|+|++|+||+| .++|||||+|.++|+|+-|++.||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4579999988 568999999999999999999999997 69999999999999999999999999999999999988
Q ss_pred ccC
Q 005082 448 KEK 450 (715)
Q Consensus 448 ~eK 450 (715)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 733
No 41
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.2e-09 Score=103.50 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
.+.|.||||+++ ++-++||+|.++|++.|+|..|.|-.| ..-||+||+|...++|+.|+.-++++.|+.|.|.|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 366789999988 678999999999999999999988776 556999999999999999999999999999999998
Q ss_pred ecc
Q 005082 446 PYK 448 (715)
Q Consensus 446 ~A~ 448 (715)
|-.
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 754
No 42
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.6e-09 Score=89.78 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.4
Q ss_pred HHHHHHhhc----cCCCeEEEE-eecc------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 388 EedLre~FS----qFGeVedVr-Ip~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|++.||+..++||.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=8.6e-10 Score=117.92 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=75.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
...+|+|+.+ +|++++|.|++||++||+|.+|.|++| ++|||+||+|.+.+.+.++|.. ..|.|+||.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 6789999988 899999999999999999999999998 9999999999999999999987 789999999999999
Q ss_pred ccCCCCc
Q 005082 448 KEKGKVP 454 (715)
Q Consensus 448 ~eK~k~~ 454 (715)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 8876543
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.90 E-value=3.1e-09 Score=118.09 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=74.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
+.||||++ .|+++|++|.++|++.|.|.++++++| +.|||||++|.+.++++.|++.||+..+.||+|+|.++..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 99999987 789999999999999999999999997 9999999999999999999999999999999999999876
Q ss_pred CCCC
Q 005082 450 KGKV 453 (715)
Q Consensus 450 K~k~ 453 (715)
+...
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 5543
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.88 E-value=2.3e-09 Score=119.76 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+..| +||+++ +++++|++|+.+|+.||.|+.|.++.| ++||||||||.+.++|++|+++||+-+|-||.|+|..
T Consensus 277 p~~r-l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 277 PMRR-LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred chhh-hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3334 999988 899999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred cccCCCCchH
Q 005082 447 YKEKGKVPDK 456 (715)
Q Consensus 447 A~eK~k~~~~ 456 (715)
..++.+..+.
T Consensus 355 v~~r~~~~~a 364 (549)
T KOG0147|consen 355 VTERVDTKEA 364 (549)
T ss_pred eeeecccccc
Confidence 8887665543
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=92.51 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
...+|-+||.++ ++++|.|++-++|++||.|..|||-.. .-||-|||.|++..+|++|++.|++..+++|-+.|-.+.
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 356788999988 789999999999999999999999665 789999999999999999999999999999999999887
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.4e-08 Score=113.55 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=73.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
.-.|.|+++ +|.+.+.+|+.+|+.||.|.+|.||+. +-.|||||+|.+..+|..|++.+|++.|+||.|-|.||..
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 456778877 799999999999999999999999973 6679999999999999999999999999999999999998
Q ss_pred CCCC
Q 005082 450 KGKV 453 (715)
Q Consensus 450 K~k~ 453 (715)
|...
T Consensus 196 Kd~y 199 (678)
T KOG0127|consen 196 KDTY 199 (678)
T ss_pred cccc
Confidence 8653
No 48
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.75 E-value=2.3e-08 Score=111.08 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccC------------CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCc
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqF------------GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~ 435 (715)
...+..|+|||++| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ ||+.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 45688899999999 5789999999999974 4666776665 78999999999999999995 7999
Q ss_pred eEcCeEEEEEeccc
Q 005082 436 FVCDARVLVKPYKE 449 (715)
Q Consensus 436 ~L~GR~I~Vk~A~e 449 (715)
.|.|+.|+|.+...
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999976543
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.74 E-value=9.5e-09 Score=110.01 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=75.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|+|+.+ +.+++|+++++||.+||.|.++.+++| +.||||||+|.+.+.+++++.. .-|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 4679999988 578999999999999999999999997 8999999999999999999988 899999999999999
Q ss_pred ccCCCCch
Q 005082 448 KEKGKVPD 455 (715)
Q Consensus 448 ~eK~k~~~ 455 (715)
.+|.....
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 99876543
No 50
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.72 E-value=2.7e-08 Score=114.67 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=78.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
....-+||||||.+ +.+++|.||+++|+.||+|++|.++- .||||||+.....+|++|+.+|+.+.+.++.|+|.|+
T Consensus 416 ~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 416 HISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred ceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 55678899999998 67899999999999999999999988 9999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 005082 448 KEKGKVP 454 (715)
Q Consensus 448 ~eK~k~~ 454 (715)
..++.+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887655
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.4e-08 Score=109.59 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceE-cCeEEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L-~GR~I~Vk 445 (715)
..-.+||||.| .-++.|++|.-+|++.|+|-++|||.| .+||||||||.+.+.|++|++.+|+++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55579999998 568999999999999999999999987 9999999999999999999999999988 78888886
Q ss_pred eccc
Q 005082 446 PYKE 449 (715)
Q Consensus 446 ~A~e 449 (715)
....
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 6543
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=4.5e-08 Score=107.50 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..-+-|||.+|. -++|||.|++.|++||.|++|..++| ||||-|.+.++|.+|++.||+..|+|..|.|..|++-
T Consensus 257 s~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 455789999985 57999999999999999999999864 9999999999999999999999999999999999875
Q ss_pred CCC
Q 005082 451 GKV 453 (715)
Q Consensus 451 ~k~ 453 (715)
.+.
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 543
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=3.5e-08 Score=98.51 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.+.+++|||+++ +.++.|.+|+++|.+||.|.+|.+..- ....||||+|+++.+|+.|+.--++..++|.+|+|..+.
T Consensus 3 gr~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 3 GRNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred CcccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 356789999998 468999999999999999999988542 346799999999999999999999999999999999876
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 44
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4.9e-08 Score=106.83 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCc-eEc--Ce
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH-FVC--DA 440 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~-~L~--GR 440 (715)
..+.+.-++||+.+ +-..+|+|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..+... .|- ..
T Consensus 29 ~~d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 44566779999977 567899999999999999999999998 88999999999999999999998553 443 46
Q ss_pred EEEEEecccCCCC
Q 005082 441 RVLVKPYKEKGKV 453 (715)
Q Consensus 441 ~I~Vk~A~eK~k~ 453 (715)
.|.|+++...+++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7889998765554
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=97.97 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.--|||=++ ..+.+|..|+++|++||-|..|+|++| +.||||||+..+.++|.-|+..||+..+.+|.+.|..-.
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 457888877 457899999999999999999999998 999999999999999999999999999999999998765
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=6.3e-08 Score=108.40 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
-|+||+++ .++++.++|.++|+.+|+|..+.|+.+ ++||||||||.-.|++++|++..+...+.||.|.|..++.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999988 688999999999999999999999985 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 005082 450 KGKV 453 (715)
Q Consensus 450 K~k~ 453 (715)
|...
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 6543
No 57
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.2e-07 Score=103.86 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=87.3
Q ss_pred hhhhHHHhhhhHHHHHHHHHHhhhhhhhhhcccCcccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCC
Q 005082 320 SMNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYG 399 (715)
Q Consensus 320 ~~~~llq~~~~esQR~~~~~a~~l~ed~~k~g~~R~~RsDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFG 399 (715)
||+.+..++..+++||... -.......+.-|--+ ..+....|||-++ +-.++..+|.+.|+.||
T Consensus 38 gy~yvnf~~~~da~~A~~~-------~n~~~~~~~~~rim~--------s~rd~~~~~i~nl-~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 38 GYAYVNFQQPADAERALDT-------MNFDVLKGKPIRIMW--------SQRDPSLVFIKNL-DESIDNKSLYDTFSEFG 101 (369)
T ss_pred ceEEEecCCHHHHHHHHHH-------cCCcccCCcEEEeeh--------hccCCceeeecCC-CcccCcHHHHHHHHhhc
Confidence 4566666677788887653 011111122222221 1222223999988 55789999999999999
Q ss_pred CeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCCCC
Q 005082 400 PVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (715)
Q Consensus 400 eVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~k~ 453 (715)
+|.+|+|..| -+||| ||.|+++++|++|++.||+..+.|..|.|..+..+..+
T Consensus 102 ~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 102 NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9999999987 78999 99999999999999999999999999999888766543
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.9e-07 Score=97.17 Aligned_cols=80 Identities=13% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.++..+.|..+ +-++|+++||.+|+..|+|++|++++| ++-|||||-|.++++|++|+..+|+-.|..+.|+|..
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34445555555 568999999999999999999999998 8889999999999999999999999999999999999
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
+.+..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 98754
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=8.1e-08 Score=91.94 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
++.-...-=-|+|+++ +-..||++|.+.|..||+|..|.+-.| -.|||+.|+|.+.+.|++|++.||+..|-|..
T Consensus 65 gPqrSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCccceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 3344444557889987 457899999999999999999999876 67899999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 005082 442 VLVKPYKEKGK 452 (715)
Q Consensus 442 I~Vk~A~eK~k 452 (715)
|.|.|+--+..
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999865543
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.54 E-value=1.6e-07 Score=102.92 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FS-qFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......|.+||++| +|++.=.+|+++|. +.|+|+.|.+..| |.||||.|+|+++|.+++|+++||.+.++||+|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 34455677999988 68888899999994 6899999999998 9999999999999999999999999999999999
Q ss_pred EEecc
Q 005082 444 VKPYK 448 (715)
Q Consensus 444 Vk~A~ 448 (715)
||--.
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98544
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.43 E-value=4.9e-07 Score=92.41 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHH----hhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre----~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
..+.||||.++.+ .+..++|++ +|++||+|.+|....- +.||-|||.|.+.+.|-.|+..|+|-.+.|+.++|.
T Consensus 7 ~pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3445999999865 678888888 9999999999988754 899999999999999999999999999999999999
Q ss_pred ecccCCCCch
Q 005082 446 PYKEKGKVPD 455 (715)
Q Consensus 446 ~A~eK~k~~~ 455 (715)
+++.+.....
T Consensus 86 yA~s~sdii~ 95 (221)
T KOG4206|consen 86 YAKSDSDIIA 95 (221)
T ss_pred cccCccchhh
Confidence 9988866543
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=2.5e-07 Score=99.74 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=93.8
Q ss_pred hhhhhHHHhhhhHHHHHHHH-HHhhhhhhhhhcccCc-----ccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHH
Q 005082 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSR-----LERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVS 392 (715)
Q Consensus 319 k~~~~llq~~~~esQR~~~~-~a~~l~ed~~k~g~~R-----~~RsDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLr 392 (715)
|.|.|+-..-.+.+|-+..+ ++.|||.+..|.|++. ..-.| | +---.+.=+.|||..+ +-+.+|+||+
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID---~--vqeeAk~fnRiYVaSv-HpDLSe~DiK 228 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID---M--VQEEAKKFNRIYVASV-HPDLSETDIK 228 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHH---H--HHHHHHhhheEEeeec-CCCccHHHHH
Confidence 55555444334555655554 6889999999998631 01111 0 0011233468999976 5689999999
Q ss_pred HhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 393 NYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 393 e~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
..|+.||+|..|.+-++ .+|||||++|.+......|+..||-..|.|.-++|....
T Consensus 229 SVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 229 SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999875 899999999999999999999999999999999997654
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=1e-06 Score=93.08 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCCCC
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~k~ 453 (715)
++|||+++ -.+++.+|+.+|++||+|.+|.|++ .||||-.++...++.|+.+|++..|+|..|.|+.++.|.+.
T Consensus 4 KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 4 KLFIGNLP-REATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred chhccCCC-cccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 68999884 5799999999999999999999986 79999999999999999999999999999999998888543
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.26 E-value=9.6e-07 Score=88.15 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEE-Eeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedV-rIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
.....|+|+++.. .++|..|.+.|+.||.+.+. .|++| .++|||||.|.+.|.+.+|++.||++.+++|+|.|.
T Consensus 94 ~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 4447899999965 99999999999999998774 55554 889999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
.+..+...
T Consensus 173 ya~k~~~k 180 (203)
T KOG0131|consen 173 YAFKKDTK 180 (203)
T ss_pred EEEecCCC
Confidence 88766543
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2e-06 Score=94.36 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCC
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~ 451 (715)
.+||| .++||..|.+.|+++|+|++|+|.+| -+-|||||.|.++++|++||+.||...|.|++|++-|.....
T Consensus 3 sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 68999999999999999999999876 578999999999999999999999999999999999987654
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.22 E-value=2.5e-06 Score=98.14 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 376 IYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
|||.|+ .|++|.++|+.+|.+.|.|.+|+|..- .+.|||||+|.+.++|+.|+..|+++.|+|+.|.|+...
T Consensus 518 lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999987 799999999999999999999999762 234999999999999999999999999999999999887
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=2.4e-06 Score=89.41 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=66.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCC-ceEcC--eEEEEE
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP-HFVCD--ARVLVK 445 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg-~~L~G--R~I~Vk 445 (715)
..|++|||-+ ...-.|||||.+|..||+|++|.|.+. .+|||+||+|.+.-+|+.||..|.+ ..+-| ..+.||
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4578888866 456789999999999999999999884 8999999999999999999999876 34444 457888
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
.+...+++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 88655443
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=91.46 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
+..+.+|.|+++ ..+++..+||..|.+||+|.+|.|++ +|+||.|+..++|..|+..||+++++|++++|...+.
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 457889999988 56889999999999999999999976 8999999999999999999999999999999998887
Q ss_pred CCCCc
Q 005082 450 KGKVP 454 (715)
Q Consensus 450 K~k~~ 454 (715)
|-...
T Consensus 150 rlrta 154 (346)
T KOG0109|consen 150 RLRTA 154 (346)
T ss_pred ccccC
Confidence 65443
No 69
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.5e-06 Score=92.04 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=67.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCC----ceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKR----MFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsR----GFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+--+-|||--+.+ -+|.+||.-+|+.||+|..|.|++|++- -||||+|++.+++++|.-+|++..|+.|+|.|..
T Consensus 237 PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4556788876654 3678999999999999999999998444 4999999999999999999999999999999977
Q ss_pred ccc
Q 005082 447 YKE 449 (715)
Q Consensus 447 A~e 449 (715)
.+.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 654
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=1.2e-06 Score=89.52 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=74.7
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
+.++....|||||+++ ...++||-|.+.|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+
T Consensus 2 gaaaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 2 GAAAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred CCCCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 3466778899999987 568999999999999999999999885 455 99999999999999999999999999999
Q ss_pred EEEecccCC
Q 005082 443 LVKPYKEKG 451 (715)
Q Consensus 443 ~Vk~A~eK~ 451 (715)
.|++.....
T Consensus 80 q~~~r~G~s 88 (267)
T KOG4454|consen 80 QRTLRCGNS 88 (267)
T ss_pred hcccccCCC
Confidence 998876543
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=1.6e-06 Score=99.69 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
-.+|.|.++ .|..+-.+|+++|..||.|.+||||.- -+||||||+|.++.+|.+|++.|..+.|.||++...|+.
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 358999987 689999999999999999999999972 679999999999999999999999999999999999998
Q ss_pred cCCC
Q 005082 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.07 E-value=5.2e-06 Score=93.55 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=69.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..|.++|..+ ...+...||+++|++||+|+-.+|+.. -.|.|||||+.+.++|.++|+.|..+.|.||.|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4578999988 456778999999999999999999986 56789999999999999999999999999999999877
Q ss_pred cc
Q 005082 448 KE 449 (715)
Q Consensus 448 ~e 449 (715)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 63
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.02 E-value=1e-05 Score=82.13 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccC-CCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqF-GeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.-+||..++ .-+-|.++..||.+| |.|..+|+-+. .+||||||+|++.|.|+-|-+.||+.-|.++.|.|..-.
T Consensus 50 g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 346777664 567889999999999 78888888663 899999999999999999999999999999999998765
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=5.3e-06 Score=86.93 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
=.|||-.+ .-.+.+.+|-.+|-.||.|++.+|..| ++|.||||.|+++.+++.||..||+-.|.-++++|....+
T Consensus 286 CNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 286 CNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred ceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 34666655 457899999999999999999999776 8999999999999999999999999999999999987766
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
|..
T Consensus 365 kda 367 (371)
T KOG0146|consen 365 KDA 367 (371)
T ss_pred ccc
Confidence 653
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.87 E-value=2.1e-05 Score=87.72 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=64.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec----cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~----DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.+|||.++ +.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.++++.|+.+ +...|+++++.|+--+
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 45999988 56899999999999999999999865 34458999999999999999999 8999999999997543
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.74 E-value=8.4e-05 Score=77.67 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.......+|||.|+ ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|.+|++.+++.-++|+++.+
T Consensus 78 ~~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 34556689999988 789999999999999999999999887 78899999999999999999999999999999988
Q ss_pred Eecc
Q 005082 445 KPYK 448 (715)
Q Consensus 445 k~A~ 448 (715)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6554
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.73 E-value=3.9e-05 Score=79.52 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...+.+||+++ ++.+|-+++..+|+-||.|..|.|++| +.|||+||+|.+.+.++.++. ||+..|.|+.|.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45688999987 666776679999999999999999987 678999999999999999999 799999999999987
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6655
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=2.5e-05 Score=80.27 Aligned_cols=72 Identities=26% Similarity=0.465 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..+||+.+ .|.+.+++|..+|.+||.|.+|.+. .|||||.|.+..+|..|+..+|+.+|+|-++.|.++..+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 36899977 6899999999999999999999885 599999999999999999999999999999777777644
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.72 E-value=5.7e-05 Score=83.49 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.+.+..-||+|.++ ++++|=..|++-|.+||.|..+.|+.. ++|| .|.|.++++|++|+..||+..|+||.|.|..
T Consensus 531 gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 531 GAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34566778999988 689999999999999999999999754 6776 9999999999999999999999999999975
No 80
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.55 E-value=0.0001 Score=82.17 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=65.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
.|.+....+.+-+.-.+-.--|-++|..+|.+||+|+.|.|-+ +---|.|||.+..+|-.|... .+..|+||.|+|.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3466666776666644433446799999999999999999976 334599999999999888776 8999999999999
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
|..+-
T Consensus 442 whnps 446 (526)
T KOG2135|consen 442 WHNPS 446 (526)
T ss_pred EecCC
Confidence 98764
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.55 E-value=6.2e-05 Score=78.68 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
-.||.|-+ .-+++.+.|.+.|.+|=.-...+|++| +++|||||.|.+..++..|+..||+..++.|.|+......
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 36777633 235899999999999999999999997 9999999999999999999999999999999999977665
Q ss_pred CCCCchHHH
Q 005082 450 KGKVPDKYR 458 (715)
Q Consensus 450 K~k~~~~~r 458 (715)
|..+.+.-+
T Consensus 270 keRn~dvv~ 278 (290)
T KOG0226|consen 270 KERNLDVVK 278 (290)
T ss_pred HhhhhHHHh
Confidence 554444433
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.47 E-value=0.00024 Score=82.35 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec-------cCCCceEEEEEcCHHHHHHHHHhCCCceEcCe
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~-------DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR 440 (715)
..++....+||+++. ..++|+.|-..|+.||+|..|+|+. ++-|-||||.|-+..++++|++.|++.++.++
T Consensus 169 dgDP~TTNlyv~Nln-psv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLN-PSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCC-ccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 346788999999985 4799999999999999999999986 27788999999999999999999999999999
Q ss_pred EEEEEeccc
Q 005082 441 RVLVKPYKE 449 (715)
Q Consensus 441 ~I~Vk~A~e 449 (715)
.++..|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999998853
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00011 Score=83.27 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.+-..|+|+|.++ +.++++++|+++|+.||+|..|+.-. .++|..||.|-|..+|++|++.|++..|.|++|+
T Consensus 71 ~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3567899999987 56899999999999999999988743 3899999999999999999999999999999998
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=73.19 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
+-.|.|.++.++.+|.+.|..+|+-||.|.+|.|.+. ++--|.|.|.+...|+.|++.|+++.|.|++|+|...+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6789999999999999999999999999999999985 44789999999999999999999999999999997765
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.13 E-value=0.0001 Score=52.31 Aligned_cols=23 Identities=48% Similarity=1.128 Sum_probs=17.6
Q ss_pred Ccccccccc-cccCCCCCCcccCC
Q 005082 231 WRPCLYFAR-GYCKNGSSCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFar-G~CK~GssCrf~Hg 253 (715)
-++|.+|.+ |.|++|.+|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 579987777 99999999999997
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.98 E-value=0.0019 Score=72.69 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=64.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
.-.|-+..| +|+.|++||.++|+.+ .|+.+.+++. |..|=|||+|.+.|++++|+++ +...+..|-|.|-.+..+
T Consensus 10 ~~~vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 334555566 7999999999999999 5788888875 8899999999999999999999 999999999999877544
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.89 E-value=0.00044 Score=78.45 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=65.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.||+++-.++ -+.++-+|.++|+.+|+|.+|+|+.| ++||.|||+|.+.+.+..|+.. .|+.+-|.+|.|+...
T Consensus 179 ~Rtvf~~qla-~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLA-RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHh-hcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 3566655543 57789999999999999999999998 8999999999999999999965 9999999999998765
Q ss_pred c
Q 005082 449 E 449 (715)
Q Consensus 449 e 449 (715)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 88
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.73 E-value=0.0032 Score=51.30 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHH
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~AL 429 (715)
+.|-|.+-... ..+.|.++|.+||+|+++++.. .+-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 55666543222 3477888999999999999984 5679999999999999985
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.72 E-value=0.012 Score=64.11 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=66.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEE--------Eeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedV--------rIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
..+..|||.+++ .++|-+++.++|+++|-|..= .+-++ +-||=|.++|...|+|+.|++.|+...|.|
T Consensus 132 ~~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 455569999985 578999999999999988643 33333 889999999999999999999999999999
Q ss_pred eEEEEEecc
Q 005082 440 ARVLVKPYK 448 (715)
Q Consensus 440 R~I~Vk~A~ 448 (715)
+.|+|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999998876
No 90
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.62 E-value=0.0011 Score=45.86 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005082 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~Hg 253 (715)
.+|.+|.+|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.50 E-value=0.011 Score=66.83 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed-VrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...-.|-++.| +|.+||+||.++|+-.=.|.+ |.++.| ++-|=|||.|++.|.|++||.. +...|..|-|+|..
T Consensus 101 ~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 34455666776 799999999999998765555 444555 7889999999999999999998 89999999999976
Q ss_pred cc
Q 005082 447 YK 448 (715)
Q Consensus 447 A~ 448 (715)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.46 E-value=0.0056 Score=66.52 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCCCcceEEEcCCCCCCCCHH---HH--HHhhccCCCeEEEEeecc-----CCCc-e-EEEEEcCHHHHHHHHHhCCCce
Q 005082 369 VNPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEe---dL--re~FSqFGeVedVrIp~D-----rsRG-F-GFVTF~~~E~Ae~ALe~LNg~~ 436 (715)
-..+.+-+||.++..--..|+ .| .+||++||.|.+|.|-+. ---+ + -||||...|+|.+++...++..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 346778899998877666666 44 389999999999988542 1112 2 2999999999999999999999
Q ss_pred EcCeEEEEEeccc
Q 005082 437 VCDARVLVKPYKE 449 (715)
Q Consensus 437 L~GR~I~Vk~A~e 449 (715)
++||.|+...-..
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999865443
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0031 Score=65.11 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=57.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
...|.|.++ ...+...+|.++|++||++..+.+ .++++||.|...+++.+|++.+++..+.++.|.|.
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 344555544 445677999999999999966655 57999999999999999999999999999999993
No 94
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.05 E-value=0.023 Score=52.31 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=47.5
Q ss_pred cCCCCCCCCHHHHHHhhccCCCeEEEE-------------eeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE-E
Q 005082 379 TFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL-V 444 (715)
Q Consensus 379 g~~~~~~~TEedLre~FSqFGeVedVr-------------Ip~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~-V 444 (715)
||+.. ....|-++|++||+|.+.. ++. ...+-.|+|+++.+|.+||.+ |+..|.|..+. |
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 55533 4577889999999999886 443 677999999999999999999 99999996555 5
Q ss_pred Eec
Q 005082 445 KPY 447 (715)
Q Consensus 445 k~A 447 (715)
++.
T Consensus 87 ~~~ 89 (100)
T PF05172_consen 87 KPC 89 (100)
T ss_dssp EE-
T ss_pred EEc
Confidence 655
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.03 E-value=0.023 Score=59.16 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec-c----CCCceEEEEEcCHHHHHHHHHhCCCceE---cCeEEE
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDARVL 443 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~-D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L---~GR~I~ 443 (715)
+-||+||.+++ -++...+|..+|..|---+...|-+ + -.+-+|||||.+...|.+|+..|||..+ .+..++
T Consensus 33 ~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 46999999884 5788999999999997777776644 2 2346999999999999999999999998 478888
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
+..++...|+
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 8888766554
No 96
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.96 E-value=0.03 Score=61.22 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCCCCcceEEEcCCC---CCCCC-------HHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceE
Q 005082 368 IVNPASRQIYLTFPA---DSTFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 368 s~~~~sRtIYVg~~~---~~~~T-------EedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L 437 (715)
+-.+..+|+.+.++- ++..+ +++|++-=++||.|.+|.|---...|.+-|+|.+.++|..++..|+|..+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 455677888888652 22334 45566667899999999664336789999999999999999999999999
Q ss_pred cCeEEEEEecccCCC
Q 005082 438 CDARVLVKPYKEKGK 452 (715)
Q Consensus 438 ~GR~I~Vk~A~eK~k 452 (715)
+||.|....+-.+.+
T Consensus 340 dgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 340 DGRQLTASIWDGKTK 354 (382)
T ss_pred cceEEEEEEeCCcce
Confidence 999999998876654
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.91 E-value=0.0051 Score=65.81 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCcceEE-EcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 371 PASRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIY-Vg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
-.+.+|| |+.+ ++.+++++|..+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+.+.
T Consensus 182 ~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3456788 6644 889999999999999999999999875 8899999999999999999987 8899999999998
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
...++.+.
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 77766543
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.89 E-value=0.036 Score=50.84 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=59.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhcc--CCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEc----CeEEE
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSq--FGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~----GR~I~ 443 (715)
.||-|.+| +-..|.++|.+++.+ .|...-+.+|.| -..|||||-|.+.+.|.+-.+.++++.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 57888887 457888888887765 478888889888 66899999999999999999998887775 45556
Q ss_pred EEecc
Q 005082 444 VKPYK 448 (715)
Q Consensus 444 Vk~A~ 448 (715)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66653
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.76 E-value=0.012 Score=68.78 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEe---eccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed-VrI---p~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.+..-|||..+ ...+++.++-++|..--.|++ |.| +.|+.++-|||.|.+++++.+|+..-..+.+..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45568999987 567889999999999889988 666 4469999999999998888888877688999999999987
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 766543
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.64 E-value=0.063 Score=59.34 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..--+.|-.+...+++-+.|-++|..||.|++|+.++ .+.|-|.|+..+..++++|+..||+..+-|.+|.|+..+..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 3445667778888999999999999999999999987 36789999999999999999999999999999999987543
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.59 E-value=0.029 Score=64.20 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHhhccCCCeEEEEeecc-------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 389 edLre~FSqFGeVedVrIp~D-------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
|+|+.-+++||.|..|.|+.+ -.-|--||+|.+.+++++|++.|+|..+.||.|....|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566777889999999999874 3446679999999999999999999999999999988754
No 102
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.51 E-value=0.013 Score=50.96 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005082 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (715)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999988 46678888887765 5667777777543
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.33 E-value=0.049 Score=49.22 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCCH----HHHHHhhccC-CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 375 QIYLTFPADSTFRE----EDVSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 375 tIYVg~~~~~~~TE----edLre~FSqF-GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
.+||.+++.. .+. ..|++++.-+ |+|..| ..+-|+|.|.+.|.|++|++.|++..+.|++|.|.....
T Consensus 4 ~L~V~NLP~~-~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPTN-KDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--TT-S-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred EEEEecCCCC-CCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5889888653 343 4556666666 588887 568999999999999999999999999999999997744
Q ss_pred CC
Q 005082 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
.+
T Consensus 77 ~r 78 (90)
T PF11608_consen 77 NR 78 (90)
T ss_dssp S-
T ss_pred cc
Confidence 33
No 104
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.10 E-value=0.023 Score=48.56 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=37.3
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005082 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (715)
.-+|.+|++++|+.|.||-|+||= .+..|++.|=-.+ .+|..-|..|-.-
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~v 60 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEV 60 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 357999999999999999999884 5567888875544 4555556655443
No 105
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.95 E-value=0.033 Score=51.40 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=35.0
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC
Q 005082 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP 434 (715)
Q Consensus 376 IYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg 434 (715)
|.+.++ ...++.++|++.|++||+|..|.+.. .---|||-|.+.+.|+.|++++..
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHH
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHh
Confidence 344443 44577999999999999999998876 445799999999999999987643
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.82 E-value=0.022 Score=65.12 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
-.-.+|||+++. ..+++..+++....||++...+++.| .++||+|-+|.+......|++.+|+..+.+.++.|..
T Consensus 287 ~~~~ki~v~~lp-~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLP-LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCc-CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 455789999884 57999999999999999999999886 7899999999999999999999999999999999988
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
+....
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 86544
No 107
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.75 E-value=0.017 Score=38.19 Aligned_cols=19 Identities=42% Similarity=1.085 Sum_probs=16.9
Q ss_pred ccccccccccCCCCCCcccCC
Q 005082 233 PCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 233 pC~YFarG~CK~GssCrf~Hg 253 (715)
+|+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998876 999999999993
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.034 Score=63.95 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred HHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEe
Q 005082 389 EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (715)
Q Consensus 389 edLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~ 446 (715)
.-|.++|+++|+|+.+.+|.+ ..+||.|++|.+..+|+.|++.+||+.|+ +.+..|..
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 456788999999999999976 88999999999999999999999998875 45555543
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.70 E-value=0.1 Score=51.26 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=53.7
Q ss_pred CCcceEEEcCCC-----CCCCCH---HHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 371 PASRQIYLTFPA-----DSTFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 371 ~~sRtIYVg~~~-----~~~~TE---edLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
+-.-||.|.-.. ...+.+ .+|-+.|.+||+|.=||++- +-=+|||.+-+.|-+|++. ++..|+|+.|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~l 99 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRTL 99 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEEE
Confidence 566677776332 123433 35667799999999999986 5689999999999999997 9999999999
Q ss_pred EEEeccc
Q 005082 443 LVKPYKE 449 (715)
Q Consensus 443 ~Vk~A~e 449 (715)
.|+.-.+
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9986543
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.39 E-value=0.023 Score=63.43 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec------c-----------CCCceEEEEEcCHHHHHHHHHhCC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~------D-----------rsRGFGFVTF~~~E~Ae~ALe~LN 433 (715)
-.+|+|++.+++..... +.|.++|+.+|.|..|||.. | ..+-+|+|+|+..+.|.+|.+.||
T Consensus 229 l~srtivaenLP~Dh~~-enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSY-ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHH-HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46899999999765433 89999999999999999954 2 236789999999999999999975
Q ss_pred Cc
Q 005082 434 PH 435 (715)
Q Consensus 434 g~ 435 (715)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.11 Score=59.21 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec-------cCCCc---eEEEEEcCHHHHHHHHHhCCCceEc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRM---FGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~-------DrsRG---FGFVTF~~~E~Ae~ALe~LNg~~L~ 438 (715)
..+-+|+|+||++ +|+++|+.|...|..||.| .|..+. -..+| |.|+.|+++..|++.+.. ...+
T Consensus 255 ~~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGL-PWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEG 329 (520)
T ss_pred ccccccceeecCC-CccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhc
Confidence 3467899999998 7899999999999999995 455552 15677 999999999999988766 3335
Q ss_pred CeEEEEEecccCC
Q 005082 439 DARVLVKPYKEKG 451 (715)
Q Consensus 439 GR~I~Vk~A~eK~ 451 (715)
......+...++-
T Consensus 330 ~~~~yf~vss~~~ 342 (520)
T KOG0129|consen 330 EGNYYFKVSSPTI 342 (520)
T ss_pred ccceEEEEecCcc
Confidence 5555555544443
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.04 E-value=0.14 Score=58.56 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=68.0
Q ss_pred cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhC
Q 005082 358 NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG 432 (715)
Q Consensus 358 sDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~FS-qFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~L 432 (715)
+||... +.....-+||||||.++ --++.++|..+|. -||-|..|-|=.| ..||-|=|||.+...-.+||++
T Consensus 357 s~fv~d--~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa- 432 (520)
T KOG0129|consen 357 SDFVLD--HNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA- 432 (520)
T ss_pred chhhhc--cCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-
Confidence 455554 22445667999999984 5689999999999 7999999999776 6789999999999999999987
Q ss_pred CCceE----cCeEEEEEecc
Q 005082 433 NPHFV----CDARVLVKPYK 448 (715)
Q Consensus 433 Ng~~L----~GR~I~Vk~A~ 448 (715)
.-..| -.++|.||+|.
T Consensus 433 rFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 433 RFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred heEEEeccccceeeeeccee
Confidence 32222 23578888886
No 113
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=93.80 E-value=0.024 Score=63.02 Aligned_cols=26 Identities=42% Similarity=1.115 Sum_probs=24.2
Q ss_pred CCcccccccccccCCCCCCcccCCCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg~~ 255 (715)
..|||.||-.|-|+.|.+|||.||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 58999999999999999999999953
No 114
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.76 E-value=0.031 Score=59.94 Aligned_cols=28 Identities=43% Similarity=0.931 Sum_probs=25.1
Q ss_pred CCCCCcccccccc-cccCCCCCCcccCCC
Q 005082 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGG 254 (715)
Q Consensus 227 ~~~g~kpC~YFar-G~CK~GssCrf~Hg~ 254 (715)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4567899999999 999999999999994
No 115
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.68 E-value=0.077 Score=58.22 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEE--------Eeecc----CCCceEEEEEcCHHHHHHHHHhCCCce
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedV--------rIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~ 436 (715)
-...+-+|||-.+.+ .+++++|.++|.++|.|..= .|-+| +.||=|-|+|+++-.|+.|+...++..
T Consensus 62 ~~s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred cccccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 367778999987754 68999999999999988543 23223 889999999999999999999999999
Q ss_pred EcCeEEEEEecccCCCC
Q 005082 437 VCDARVLVKPYKEKGKV 453 (715)
Q Consensus 437 L~GR~I~Vk~A~eK~k~ 453 (715)
++|-.|+|..+..+..+
T Consensus 141 f~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTGV 157 (351)
T ss_pred ccCCCchhhhhhhccCc
Confidence 99999999988877654
No 116
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.00 E-value=0.039 Score=58.28 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHHHHhhc-cCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 389 edLre~FS-qFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
|+|...|+ +||+|+.+.|-.. .-+|=.+|.|...|+|++|++.||+-.+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55665566 9999999977653 77899999999999999999999999999999988654
No 117
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.83 E-value=0.56 Score=48.95 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=61.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~A 447 (715)
.+.++.+++++++ ..++.+.+..+|.+|.--.+||++.. .++.|||+|.+...+..|...+.+-.|- ...+.|..+
T Consensus 143 ~ppn~ilf~~niP-~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIP-SESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCC-cchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 5677888898885 46788999999999999999998763 5789999999999999998887776664 666666654
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=91.52 E-value=0.1 Score=55.29 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec-c--------CCCc-------eEEEEEcCHHHHHHHHHhCCCceE
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-------FGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~-D--------rsRG-------FGFVTF~~~E~Ae~ALe~LNg~~L 437 (715)
--||+.+|+. .+....||++|++||+|-.|.+-. + +.+| =|+|+|.+...|+++.+.||+..|
T Consensus 75 GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699998865 588999999999999999999843 2 1111 289999999999999999999999
Q ss_pred cCeE
Q 005082 438 CDAR 441 (715)
Q Consensus 438 ~GR~ 441 (715)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9863
No 119
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.78 E-value=0.82 Score=46.43 Aligned_cols=61 Identities=16% Similarity=0.025 Sum_probs=47.2
Q ss_pred CHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC--CceEcCeEEEEEeccc
Q 005082 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKE 449 (715)
Q Consensus 387 TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~I~Vk~A~e 449 (715)
....|+++|..|+.+....+.. +-+=-.|.|.+.+.|.+|...++ +..+.|..++|..+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4588999999999999998877 55568999999999999999998 8999999999987743
No 120
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=89.75 E-value=0.35 Score=50.70 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=48.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCce
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~ 436 (715)
+..++-.|+||.++ .-++||++|+.+|+.|--...++|-....-..|||.|++.+.|..|+..|.+-.
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 44566679999987 568999999999999987777766431122367777777777777776655433
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.14 E-value=1.1 Score=48.71 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 388 EedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
|+++.+--++||.|..|.|-.+ .-----||+|...+.|.+|+-.||+.++.||.|...+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4666777889999999977432 1122379999999999999999999999999999988753
No 122
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.99 E-value=0.55 Score=51.85 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=56.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEeec----cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFG--eVedVrIp~----DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
--+|||++. |-+|++||-+....-| .+.++++.. .++||||.|...+...+++.++.|....|.|..-.|-.+
T Consensus 81 ~~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 357999885 6667777777666555 334444432 389999999999999999999999999999988877665
Q ss_pred c
Q 005082 448 K 448 (715)
Q Consensus 448 ~ 448 (715)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 123
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.91 E-value=1.5 Score=43.40 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHH---hhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADSTFREEDVSN---YFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre---~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.+--.||+|..+..---..||++. ..+.||+|++|.+. .|--|.|+|.+..+|=+|+.+... ..-|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345579999976544344566654 46889999999886 466799999999999999998544 66777888877
Q ss_pred c
Q 005082 447 Y 447 (715)
Q Consensus 447 A 447 (715)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=87.83 E-value=2 Score=48.09 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=60.0
Q ss_pred cceEEEc-CCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCe--EEEEEeccc
Q 005082 373 SRQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA--RVLVKPYKE 449 (715)
Q Consensus 373 sRtIYVg-~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR--~I~Vk~A~e 449 (715)
+.-+.++ .++-|.+|-+-|..+-...|+|.+|.|.+ |.---|.|+|++.+.|++|.+.||+..|.-- .++|..+++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3444444 33567899999999999999999999987 2334699999999999999999999988654 455555655
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 3
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.64 E-value=2.6 Score=38.29 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=42.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN 433 (715)
...-.||+|+..| ...||.++|+.||.|.=--| . -.-|||...+.+.|..++..++
T Consensus 8 RdHVFhltFPkeW--K~~DI~qlFspfG~I~VsWi-~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEW--KTSDIYQLFSPFGQIYVSWI-N---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT----HHHHHHHCCCCCCEEEEEE-C---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHh--hhhhHHHHhccCCcEEEEEE-c---CCcEEEEeecHHHHHHHHHHhc
Confidence 3456899999888 56899999999999754444 3 3579999999999999988754
No 126
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.25 Score=54.52 Aligned_cols=22 Identities=41% Similarity=1.020 Sum_probs=21.4
Q ss_pred cccccccccccCCCCCCcccCC
Q 005082 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~Hg 253 (715)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999997
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.22 E-value=0.28 Score=53.59 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=61.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHH--HhhccCCCeEEEEeeccC-------CCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ-------KRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLr--e~FSqFGeVedVrIp~Dr-------sRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
..++.+||-.+..--..|..|+ +||++||.|.+|.+-.+. .--=++|||...|+|..+|...++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4556777776655556677776 799999999999886642 1113899999999999999999999999998
Q ss_pred EEEEecccC
Q 005082 442 VLVKPYKEK 450 (715)
Q Consensus 442 I~Vk~A~eK 450 (715)
++......+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 666554444
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.77 E-value=1.2 Score=50.02 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec---c----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~---D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
-|-|++| +..+|.++++.+|+-.|+|.+++|.- | ...-.+||.|.+...|..|--. ..+.+-++.|.|.+|
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 7888887 45789999999999999999999853 2 3334899999999999888654 677778888888888
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
-.-.
T Consensus 87 ~~~~ 90 (479)
T KOG4676|consen 87 GDEV 90 (479)
T ss_pred CCCC
Confidence 6544
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.17 E-value=1.4 Score=47.96 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=50.5
Q ss_pred CHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE-EEEecccC
Q 005082 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV-LVKPYKEK 450 (715)
Q Consensus 387 TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I-~Vk~A~eK 450 (715)
.-.-|-.+|++||+|+++.... .-.|=+|.|.+.-+|++||.+ |+.+|+|..+ -|++...|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 3466778999999999997774 677999999999999999999 9999998654 46665544
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.04 E-value=3 Score=49.83 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHHHhhccCCCe-EEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 381 PADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 381 ~~~~~~TEedLre~FSqFGeV-edVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.-.++++=+||-++|+.|-.+ .+|++-+. ..-|=+-|.|++.++|.+|...++++.|.+|+|.+..
T Consensus 874 n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 874 NFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 347899999999999999766 45555542 7779999999999999999999999999999998863
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=83.86 E-value=4 Score=34.93 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=43.8
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccC---CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhC
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqF---GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~L 432 (715)
-.+|+|.++. +++.+||..||..| .....|..+-|. -+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3578888873 57899999999999 235688888763 3678999999999999764
No 132
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=81.67 E-value=3.6 Score=46.51 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=64.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCe-EEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR-~I~Vk~A~ 448 (715)
.+-+.||-+.++ +..++||+|++.|.+-|-+++...-..+.|-++.+.+.+.|+|-.|+-.|..|.+.+. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 355567777766 4579999999999999998888777666778999999999999999999988998766 78887654
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.95 E-value=3.1 Score=47.24 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC-ceEcCeEEEEEecccCCC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg-~~L~GR~I~Vk~A~eK~k 452 (715)
+++|++|+. ..++..||+.+|...---..=.++ -+.||+||-+.+..-+.+|++.+++ ..+.|+++.|....+|+.
T Consensus 2 nklyignL~-p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLS-PQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccC-CCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999984 478999999999865111111122 2679999999999999999999876 578999999987766543
No 134
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.17 E-value=0.23 Score=59.69 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=59.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec----cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~----DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
+..-++||.++ +..+.+++|+..|+.+|.|+.|+|.. ++-||+|||.|..++.+.+|+.....+.+....+-|
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 45567888877 66889999999999999999998862 388999999999999999999986666555333333
No 135
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.66 E-value=2.4 Score=45.79 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=28.1
Q ss_pred cceEEEcCCC-CC----------CCCHHHHHHhhccCCCeEEEEeec
Q 005082 373 SRQIYLTFPA-DS----------TFREEDVSNYFSIYGPVQDVRIPY 408 (715)
Q Consensus 373 sRtIYVg~~~-~~----------~~TEedLre~FSqFGeVedVrIp~ 408 (715)
..|||+..++ -| --+|+.|+..|..||+|..|.||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3588887664 22 146889999999999999999964
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=76.23 E-value=3 Score=50.97 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC--eEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~Vk~A 447 (715)
..-++.++|+.+..| .....|...|..||.|..|.+-. ..-|++|.|++.+.++.|+..|.+.-|.| +++.|..+
T Consensus 452 st~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 345678899999888 46788889999999999987643 66799999999999999999998888865 67899888
Q ss_pred ccCCCCc
Q 005082 448 KEKGKVP 454 (715)
Q Consensus 448 ~eK~k~~ 454 (715)
.+-...+
T Consensus 529 ~~~~~~P 535 (975)
T KOG0112|consen 529 SPPGATP 535 (975)
T ss_pred cCCCCCh
Confidence 7765544
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.06 E-value=1.5 Score=53.11 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=64.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
+..++|.++ ++.-|.+.++.+++++|.|.+++++.- +.+|.+||.|.++.++.+++..++...+.-+.+.|....
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 456677765 788999999999999999999998763 889999999999999999999988888877777776543
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=73.75 E-value=3.8 Score=46.03 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=62.6
Q ss_pred cccccccccCCCCC-----CCCCCcceEEEc-CCCCCCCCHHHHHHhhcc----CCCeEEEEeec--c-CCCceEEEEEc
Q 005082 354 RLERNDFSINGSAG-----IVNPASRQIYLT-FPADSTFREEDVSNYFSI----YGPVQDVRIPY--Q-QKRMFGFVTFV 420 (715)
Q Consensus 354 R~~RsDF~~~g~~g-----s~~~~sRtIYVg-~~~~~~~TEedLre~FSq----FGeVedVrIp~--D-rsRGFGFVTF~ 420 (715)
+..-.||..-.+++ .+.+..+++.|+ .=..|+.++.||.++|.+ -|-++.|-.++ | |.-|=|||.|.
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFA 214 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEec
Confidence 33445666522222 233444566664 223789999999999973 23455555444 3 88899999999
Q ss_pred CHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 421 YPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 421 ~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.+++|++||.+ +...|.-|-|.+-+
T Consensus 215 ~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 215 CEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred CHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 99999999998 77777777666543
No 139
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=71.97 E-value=11 Score=38.94 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=55.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceE--cCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L--~GR~I~Vk~A~ 448 (715)
--.+.|..++. .-+=+||+++..+-|.|.-..|-+ -|.|.|.|...|+.+-|+.+|+.+.+ .|-...+....
T Consensus 115 e~RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 115 EYRVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ceeEEEecCCC-CCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 34666776643 456699999999999999888865 47999999999999999999876655 45555554433
No 140
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=68.97 E-value=1.6 Score=47.85 Aligned_cols=23 Identities=35% Similarity=0.840 Sum_probs=21.0
Q ss_pred CcccccccccccCCCCC-CcccCC
Q 005082 231 WRPCLYFARGYCKNGSS-CRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~Gss-Crf~Hg 253 (715)
.-.|+=|.||.|++|.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 35899999999999988 999995
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=68.29 E-value=1.2 Score=54.13 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=61.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..++||++++++ +.++++.+++..|..+|.|++|.|-.- +---||||.|.+.+.+-.|+-.+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 477899999987 678999999999999999999988442 2334999999999999999888777666554555544
Q ss_pred c
Q 005082 447 Y 447 (715)
Q Consensus 447 A 447 (715)
-
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 3
No 142
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=68.18 E-value=4.6 Score=43.30 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=59.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCC----CceEcCeEEEEEe
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LN----g~~L~GR~I~Vk~ 446 (715)
..|||.++.. -++.+.+++-|+.||+|+...+.-| +.-+=++|.|...-.+.+|+...+ +....++.+.|.+
T Consensus 32 a~l~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 7899998854 4788889999999999998877655 777889999999999999988753 2445778887755
Q ss_pred cc
Q 005082 447 YK 448 (715)
Q Consensus 447 A~ 448 (715)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=67.36 E-value=4.8 Score=45.28 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=60.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEE---EEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVed---VrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..-|-++++ .|..+.|||-++|..|-.-++ |.|+.. +.-|=|||.|.+.|.|..|..+-.++....|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 445666666 688999999999999864333 556553 8889999999999999999988777788899999987
Q ss_pred cc
Q 005082 447 YK 448 (715)
Q Consensus 447 A~ 448 (715)
..
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 144
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=66.65 E-value=2.9 Score=45.38 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.7
Q ss_pred Ccccccc-cccccCCCCCCcccCCC
Q 005082 231 WRPCLYF-ARGYCKNGSSCRFVHGG 254 (715)
Q Consensus 231 ~kpC~YF-arG~CK~GssCrf~Hg~ 254 (715)
.-||+|| .+|.|..|..|.|.|.+
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 3489999 99999999999999985
No 145
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=66.08 E-value=2.2 Score=46.32 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=20.6
Q ss_pred cccccccccccCCCCCCcccCC
Q 005082 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~Hg 253 (715)
-.|-||-.|.|..|..|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 3699999999999999999998
No 146
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=65.41 E-value=6 Score=46.64 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=63.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceE---cCeE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FS-qFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L---~GR~ 441 (715)
.++-...++-|||.++. --||..+|+.+.. ..|.|++..| |+-|--|||+|.+.++|.....+|++..+ +++.
T Consensus 437 SPsR~~~SnvlhI~nLv-RPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLV-RPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeeccc-ccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 34566788999999885 3589999999999 6788888743 44566799999999999999999988665 6677
Q ss_pred EEEEecc
Q 005082 442 VLVKPYK 448 (715)
Q Consensus 442 I~Vk~A~ 448 (715)
|.|.+..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7766554
No 147
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=65.33 E-value=18 Score=31.06 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=35.9
Q ss_pred CCCHHHHHHhhccCCC-----eEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 385 TFREEDVSNYFSIYGP-----VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 385 ~~TEedLre~FSqFGe-----VedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.++..+|-.++..-+. |-+|+|. .-|.||+-... .++.+++.|++..++|++|.|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888888887754 4566663 46999987554 688899999999999999999865
No 148
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=58.72 E-value=5.9 Score=43.74 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCCCCCcccCC
Q 005082 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 228 ~~g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
..+-..|+||-+|.||+|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 56788999999999999999999995
No 149
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=54.47 E-value=67 Score=30.33 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=49.6
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccC-CCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqF-GeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
++-+-..+.+-++-++|..+.+.+ ..|+.+||++| ..|=...++|.+.+.|+.-....||..++-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444556777788887777766 46678899997 566678899999999999999989877643
No 150
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=54.16 E-value=5.1 Score=41.60 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=21.7
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005082 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrf~Hg 253 (715)
+-.-.| .|=..|||-.|-+|+|+|-
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhh
Confidence 344578 8999999999999999996
No 151
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=53.36 E-value=6.7 Score=45.66 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCCCCCcccCC
Q 005082 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
...-||-=|-||-|++|-+|.|.||
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 3456999999999999999999999
No 152
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=52.61 E-value=5.9 Score=41.70 Aligned_cols=21 Identities=52% Similarity=1.130 Sum_probs=18.3
Q ss_pred cccc-ccccccCCCCCCcccCC
Q 005082 233 PCLY-FARGYCKNGSSCRFVHG 253 (715)
Q Consensus 233 pC~Y-FarG~CK~GssCrf~Hg 253 (715)
-|+| -+.|.|-+|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 4855 57999999999999997
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=51.80 E-value=8.2 Score=41.76 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=63.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec----cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~----DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
....++|++.. .+++.+.+...+|.++|.+..+.+.. +.++|++.|-|...+.+..++...-.+.+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 45678888876 56677777889999999998888755 28999999999999999999998544677777776655
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 55444
No 154
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=50.11 E-value=9 Score=26.99 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.1
Q ss_pred cccccccc-ccCCCCCCcccC
Q 005082 233 PCLYFARG-YCKNGSSCRFVH 252 (715)
Q Consensus 233 pC~YFarG-~CK~GssCrf~H 252 (715)
-|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 48998888 8866 6999999
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=44.19 E-value=8.8 Score=42.47 Aligned_cols=26 Identities=27% Similarity=0.855 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCCCCcccCCC
Q 005082 229 LGWRPCLYFARGYCKNGSSCRFVHGG 254 (715)
Q Consensus 229 ~g~kpC~YFarG~CK~GssCrf~Hg~ 254 (715)
-.-|-|.+|.+|||.+|.+|++.|.-
T Consensus 132 t~~k~c~~~~~g~c~~g~~c~~~h~~ 157 (325)
T KOG1040|consen 132 TAIKKCKWYKEGFCRGGPSCKKRHER 157 (325)
T ss_pred hhhhccchhhhccCCCcchhhhhhhc
Confidence 46789999999999999999999983
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=40.44 E-value=35 Score=40.39 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=52.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhcc--CCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC--CceEcCeEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSq--FGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~I~V 444 (715)
..+|.|.|-.=+.-++.+|+|+.+|.- +=++.+|..-. .- =-||||++..+|+.|.+.|. -.+|.|+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 346777776555667889999999975 67888888765 23 37999999999999987653 24566666643
No 157
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=37.14 E-value=17 Score=39.30 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.8
Q ss_pred CCCCCccc-ccccccccCC-CCCCcccCC
Q 005082 227 SGLGWRPC-LYFARGYCKN-GSSCRFVHG 253 (715)
Q Consensus 227 ~~~g~kpC-~YFarG~CK~-GssCrf~Hg 253 (715)
.-+.-..| .|.-.|+|+. |.+|||-||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 35677899 5677899999 999999888
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=36.93 E-value=57 Score=32.90 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=44.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhcc-CCCe---EEEEeecc------CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSq-FGeV---edVrIp~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
...+|+|++|+ .++||+++.+..+. ++.- ..+.-..+ ..-.-|||.|.+.+++..-.+.++++.+.+
T Consensus 6 ~~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45689999884 58999999998887 6666 33331111 222359999999999999999999977644
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.73 E-value=61 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.6
Q ss_pred HHHHHhhccCCCeEEEEe
Q 005082 389 EDVSNYFSIYGPVQDVRI 406 (715)
Q Consensus 389 edLre~FSqFGeVedVrI 406 (715)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999998877
No 160
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=30.27 E-value=18 Score=38.54 Aligned_cols=22 Identities=36% Similarity=0.963 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005082 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~Hg 253 (715)
-.|-.|..+.|..|..|.|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 161
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=30.11 E-value=3.2e+02 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 382 ADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 382 ~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
+.-.++-++++..+.+|+- .+|+. | ..|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 8 p~~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 8 PVHGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3446788999999999975 44443 2 4555 89999999999999998998888877654
No 162
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=29.70 E-value=26 Score=38.19 Aligned_cols=24 Identities=46% Similarity=1.004 Sum_probs=22.4
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
.--+|++|-+|-|+.|-.|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 456999999999999999999999
No 163
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=29.28 E-value=12 Score=39.69 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 383 ~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
+-.++++.+.+.|+.-|+|+.+|++.+ +.|.|+||++.-...+-.++....+..+-=+++.+
T Consensus 93 d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 93 DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 456899999999999999999999986 78999999998888888887765444443333333
No 164
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=19 Score=39.39 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=22.2
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005082 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrf~Hg 253 (715)
+.--.| .|=-.|||-.|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 455689 8999999999999999996
No 165
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=25.17 E-value=42 Score=41.48 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCce--EcCeEEEEEecc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF--VCDARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~--L~GR~I~Vk~A~ 448 (715)
+.--+.|+.+++ -..+..-|..+|++||.|.+++..+| -..+.|.|...+.|-.|++++.+.. +.|.+.+|..++
T Consensus 296 plqp~~~~~nn~-v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNA-VNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhccc-ccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 334455555543 35778899999999999999999874 3469999999999999999987654 467777777665
Q ss_pred c
Q 005082 449 E 449 (715)
Q Consensus 449 e 449 (715)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 166
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.77 E-value=35 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.3
Q ss_pred cc-ccccccccCCCCCCcccCCCCCC
Q 005082 233 PC-LYFARGYCKNGSSCRFVHGGETG 257 (715)
Q Consensus 233 pC-~YFarG~CK~GssCrf~Hg~~~~ 257 (715)
-| .|-..|+|..|-+|||+-+++..
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~ 141 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDI 141 (614)
T ss_pred ccceeeccccCCccceeehhhcccCc
Confidence 47 88999999999999999877543
No 167
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=23.36 E-value=31 Score=36.55 Aligned_cols=23 Identities=43% Similarity=0.928 Sum_probs=19.1
Q ss_pred cccccccccccCCCCCCcccCCCC
Q 005082 232 RPCLYFARGYCKNGSSCRFVHGGE 255 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~Hg~~ 255 (715)
--|+||--|-|.+ -+|||+|=+.
T Consensus 262 pacryfllgkcnn-pncryvhihy 284 (377)
T KOG1492|consen 262 PACRYFLLGKCNN-PNCRYVHIHY 284 (377)
T ss_pred chhhhhhhccCCC-CCceEEEEee
Confidence 3599999999987 5899999644
No 168
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=21.55 E-value=43 Score=37.22 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=19.9
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
-+.=|+=|.||-|.+-+ |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 45668889999999976 999998
Done!