Query 005082
Match_columns 715
No_of_seqs 335 out of 1480
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 7.7E-23 2.6E-27 208.5 8.4 87 363-452 124-231 (240)
2 3s8s_A Histone-lysine N-methyl 99.7 1.4E-16 4.6E-21 143.0 12.8 79 371-450 4-86 (110)
3 4f25_A Polyadenylate-binding p 99.7 7.9E-17 2.7E-21 144.3 9.3 81 372-453 4-86 (115)
4 4fxv_A ELAV-like protein 1; RN 99.7 2.1E-16 7.1E-21 138.9 9.6 78 371-449 17-98 (99)
5 1whw_A Hypothetical protein ri 99.7 5E-16 1.7E-20 133.9 11.8 84 368-452 3-90 (99)
6 2dgs_A DAZ-associated protein 99.7 4.6E-16 1.6E-20 134.4 10.8 86 366-453 3-92 (99)
7 2lxi_A RNA-binding protein 10; 99.7 1.1E-16 3.8E-21 138.2 6.8 80 373-453 1-86 (91)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.1E-16 1.4E-20 135.1 10.3 87 366-453 5-95 (102)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.6E-16 1.6E-20 130.1 9.4 80 368-448 2-85 (85)
10 2cq3_A RNA-binding protein 9; 99.6 1.7E-15 5.9E-20 131.7 12.8 85 368-453 10-96 (103)
11 2e5h_A Zinc finger CCHC-type a 99.6 1.6E-15 5.5E-20 129.3 12.3 81 367-448 10-94 (94)
12 1x5s_A Cold-inducible RNA-bind 99.6 4.6E-16 1.6E-20 134.8 8.2 86 366-452 5-94 (102)
13 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.1E-15 7.3E-20 131.1 12.1 83 369-452 11-95 (103)
14 1x5u_A Splicing factor 3B subu 99.6 1.7E-15 5.8E-20 131.9 11.1 85 368-453 10-98 (105)
15 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.6E-16 2.9E-20 129.0 8.9 79 371-450 4-86 (87)
16 3md1_A Nuclear and cytoplasmic 99.6 1.4E-15 4.7E-20 126.7 9.8 77 374-451 2-82 (83)
17 2dgx_A KIAA0430 protein; RRM d 99.6 2E-15 7E-20 130.6 11.2 82 370-452 6-92 (96)
18 2cq0_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 131.0 11.4 83 370-453 12-98 (103)
19 1x4a_A Splicing factor, argini 99.6 2E-15 6.7E-20 132.9 11.2 85 368-453 17-102 (109)
20 2dnz_A Probable RNA-binding pr 99.6 1.4E-15 4.9E-20 129.9 10.0 81 371-452 3-87 (95)
21 2dgo_A Cytotoxic granule-assoc 99.6 2.5E-15 8.4E-20 133.2 11.7 85 368-453 10-98 (115)
22 4a8x_A RNA-binding protein wit 99.6 1.9E-15 6.6E-20 126.8 10.2 80 371-451 2-86 (88)
23 1x5t_A Splicing factor 3B subu 99.6 1.2E-15 4E-20 130.7 9.0 82 371-453 3-89 (96)
24 2dgv_A HnRNP M, heterogeneous 99.6 1E-15 3.4E-20 130.1 8.5 84 368-452 3-88 (92)
25 2do4_A Squamous cell carcinoma 99.6 2E-15 7E-20 130.6 10.6 83 369-452 13-98 (100)
26 2x1f_A MRNA 3'-END-processing 99.6 2.1E-15 7.1E-20 129.8 10.4 82 373-455 2-87 (96)
27 2wbr_A GW182, gawky, LD47780P; 99.6 1.5E-15 5.1E-20 134.0 9.4 77 369-448 3-79 (89)
28 1x4h_A RNA-binding protein 28; 99.6 2.6E-15 9E-20 131.7 11.0 85 368-453 10-104 (111)
29 2dnm_A SRP46 splicing factor; 99.6 1.4E-15 4.6E-20 132.4 9.0 85 368-453 8-96 (103)
30 2ytc_A PRE-mRNA-splicing facto 99.6 3.8E-15 1.3E-19 124.8 11.1 79 367-448 6-85 (85)
31 2cpf_A RNA binding motif prote 99.6 2.8E-15 9.7E-20 129.0 10.5 81 371-452 3-90 (98)
32 2lkz_A RNA-binding protein 5; 99.6 1.2E-15 4.1E-20 134.1 7.9 82 367-449 3-94 (95)
33 2ywk_A Putative RNA-binding pr 99.6 1.9E-15 6.4E-20 129.1 8.7 80 368-448 11-93 (95)
34 2cqc_A Arginine/serine-rich sp 99.6 4.1E-15 1.4E-19 126.8 10.7 80 369-449 11-94 (95)
35 2cpz_A CUG triplet repeat RNA- 99.6 2E-15 6.7E-20 134.0 8.9 83 370-453 22-108 (115)
36 1s79_A Lupus LA protein; RRM, 99.6 1.4E-15 4.6E-20 135.1 7.5 78 370-449 8-88 (103)
37 2cpi_A CCR4-NOT transcription 99.6 3.2E-15 1.1E-19 132.8 9.9 82 369-451 11-102 (111)
38 1oo0_B CG8781-PA, drosophila Y 99.6 4.3E-15 1.5E-19 130.6 10.6 84 368-452 21-108 (110)
39 1p27_B RNA-binding protein 8A; 99.6 2.3E-15 7.8E-20 131.3 8.7 84 368-452 18-105 (106)
40 1sjq_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 136.3 8.5 83 370-455 13-97 (105)
41 3ucg_A Polyadenylate-binding p 99.6 3.5E-15 1.2E-19 125.7 9.5 78 372-451 5-86 (89)
42 2do0_A HnRNP M, heterogeneous 99.6 5.7E-15 1.9E-19 130.4 11.2 84 368-452 10-96 (114)
43 2err_A Ataxin-2-binding protei 99.6 2.8E-15 9.4E-20 133.1 9.1 83 368-451 24-108 (109)
44 1x4c_A Splicing factor, argini 99.6 1E-14 3.4E-19 128.8 12.7 82 367-452 9-95 (108)
45 2dnq_A RNA-binding protein 4B; 99.6 4.1E-15 1.4E-19 126.6 9.8 81 368-453 3-83 (90)
46 2d9p_A Polyadenylate-binding p 99.6 2.8E-15 9.7E-20 130.3 8.9 83 370-453 12-96 (103)
47 3p5t_L Cleavage and polyadenyl 99.6 4.4E-16 1.5E-20 133.1 3.6 78 374-452 2-85 (90)
48 2div_A TRNA selenocysteine ass 99.6 2.7E-15 9.2E-20 129.3 8.6 83 368-451 4-95 (99)
49 2rs2_A Musashi-1, RNA-binding 99.6 6.9E-15 2.4E-19 130.7 11.4 82 370-453 22-107 (109)
50 2dnh_A Bruno-like 5, RNA bindi 99.6 4.9E-15 1.7E-19 129.0 10.1 83 370-453 12-100 (105)
51 3ns6_A Eukaryotic translation 99.6 6.9E-16 2.4E-20 135.0 4.8 79 371-450 4-93 (100)
52 2dgw_A Probable RNA-binding pr 99.6 6.5E-15 2.2E-19 125.3 10.6 83 367-452 4-89 (91)
53 2dh8_A DAZ-associated protein 99.6 2.7E-15 9.4E-20 130.8 8.5 84 368-453 11-98 (105)
54 2e5j_A Methenyltetrahydrofolat 99.6 2.1E-15 7.3E-20 130.2 7.7 83 368-452 14-96 (97)
55 2dgp_A Bruno-like 4, RNA bindi 99.6 3E-15 1E-19 130.5 8.7 84 368-452 8-98 (106)
56 2cqd_A RNA-binding region cont 99.6 8.4E-15 2.9E-19 130.1 11.6 83 368-452 12-98 (116)
57 2cph_A RNA binding motif prote 99.6 6.6E-15 2.2E-19 128.3 10.6 85 368-453 10-100 (107)
58 3s7r_A Heterogeneous nuclear r 99.6 7.2E-15 2.5E-19 123.8 10.2 77 369-447 7-87 (87)
59 3ulh_A THO complex subunit 4; 99.6 5.5E-15 1.9E-19 129.1 9.6 81 367-448 23-106 (107)
60 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.9E-19 127.0 11.6 81 370-453 12-97 (104)
61 2jvr_A Nucleolar protein 3; RN 99.6 4.9E-15 1.7E-19 134.1 9.6 80 370-450 25-105 (111)
62 2dng_A Eukaryotic translation 99.6 1E-14 3.5E-19 127.1 11.2 82 368-452 10-95 (103)
63 2la4_A Nuclear and cytoplasmic 99.6 2.9E-15 1E-19 129.8 7.7 77 371-450 25-101 (101)
64 3n9u_C Cleavage and polyadenyl 99.6 2.9E-15 9.9E-20 142.3 8.2 80 371-451 53-138 (156)
65 2dgt_A RNA-binding protein 30; 99.6 1.4E-14 4.9E-19 123.7 11.6 81 368-453 5-85 (92)
66 1u6f_A Tcubp1, RNA-binding pro 99.6 5.5E-15 1.9E-19 135.0 9.5 84 369-453 38-125 (139)
67 2kt5_A RNA and export factor-b 99.6 1.2E-14 4E-19 130.9 11.5 87 366-453 28-117 (124)
68 1x5p_A Negative elongation fac 99.6 1.6E-14 5.3E-19 124.8 11.8 78 370-452 12-89 (97)
69 2khc_A Testis-specific RNP-typ 99.6 6.8E-15 2.3E-19 130.9 9.7 78 370-448 37-118 (118)
70 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-14 4.1E-19 131.9 11.4 80 367-447 57-140 (140)
71 1whx_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 132.5 8.2 81 368-451 5-85 (111)
72 1nu4_A U1A RNA binding domain; 99.6 4.8E-15 1.6E-19 127.1 8.0 83 370-453 5-92 (97)
73 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.8E-20 131.9 4.7 82 370-452 5-90 (104)
74 2cpe_A RNA-binding protein EWS 99.6 6.5E-15 2.2E-19 130.0 9.0 84 369-453 11-106 (113)
75 2dgu_A Heterogeneous nuclear r 99.6 1.4E-14 4.8E-19 126.4 11.1 83 367-454 5-87 (103)
76 2cqp_A RNA-binding protein 12; 99.6 5.4E-15 1.9E-19 127.2 8.3 82 368-450 10-95 (98)
77 1x4d_A Matrin 3; structural ge 99.6 5.2E-15 1.8E-19 132.4 8.4 79 371-451 13-93 (102)
78 2cq1_A PTB-like protein L; RRM 99.6 1.2E-14 4.2E-19 129.1 10.6 81 370-453 12-94 (101)
79 2cpj_A Non-POU domain-containi 99.6 8E-15 2.7E-19 126.9 9.1 82 368-452 10-91 (99)
80 2kxn_B Transformer-2 protein h 99.6 5.7E-15 1.9E-19 135.7 8.6 84 368-452 41-128 (129)
81 2fy1_A RNA-binding motif prote 99.6 8.1E-15 2.8E-19 131.8 9.3 81 371-452 5-88 (116)
82 1why_A Hypothetical protein ri 99.6 1.3E-14 4.3E-19 125.1 9.9 80 370-452 14-95 (97)
83 2cq4_A RNA binding motif prote 99.6 5.1E-15 1.7E-19 131.2 7.6 78 371-450 23-104 (114)
84 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-14 3.9E-19 128.2 9.8 80 370-452 22-101 (109)
85 2fc9_A NCL protein; structure 99.6 2.1E-14 7.1E-19 124.4 11.2 81 368-452 10-93 (101)
86 1wg5_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 128.0 9.5 80 369-450 11-94 (104)
87 1x4b_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 129.0 10.0 81 371-453 25-109 (116)
88 2nlw_A Eukaryotic translation 99.5 9.4E-15 3.2E-19 128.6 9.1 82 370-452 12-102 (105)
89 3ex7_B RNA-binding protein 8A; 99.5 9.7E-15 3.3E-19 131.3 9.3 85 368-453 17-105 (126)
90 2jrs_A RNA-binding protein 39; 99.5 6.9E-15 2.3E-19 130.7 8.2 83 368-451 21-107 (108)
91 2cpy_A RNA-binding protein 12; 99.5 8.7E-15 3E-19 130.6 8.6 80 369-450 11-94 (114)
92 2cqg_A TDP-43, TAR DNA-binding 99.5 2.6E-14 9E-19 124.2 11.4 82 369-453 11-96 (103)
93 2dhg_A TRNA selenocysteine ass 99.5 7E-15 2.4E-19 127.8 7.8 82 370-452 6-92 (104)
94 2m2b_A RNA-binding protein 10; 99.5 2.6E-15 8.9E-20 137.1 5.3 84 368-453 18-111 (131)
95 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.5E-14 5.2E-19 135.0 10.5 83 370-453 36-122 (156)
96 2a3j_A U1 small nuclear ribonu 99.5 1.1E-14 3.8E-19 134.6 9.4 82 370-452 26-112 (127)
97 2xnq_A Nuclear polyadenylated 99.5 2.2E-14 7.6E-19 124.9 10.6 79 368-451 17-96 (97)
98 2ek1_A RNA-binding protein 12; 99.5 3.9E-15 1.3E-19 127.2 5.7 80 368-448 10-93 (95)
99 3r27_A HnRNP L, heterogeneous 99.5 1.6E-14 5.3E-19 129.5 9.8 80 369-451 17-98 (100)
100 2dnp_A RNA-binding protein 14; 99.5 2.2E-14 7.4E-19 122.1 10.2 78 370-452 6-83 (90)
101 2dis_A Unnamed protein product 99.5 1.2E-14 4.3E-19 127.2 9.0 83 370-453 5-95 (109)
102 3lqv_A PRE-mRNA branch site pr 99.5 8.9E-15 3.1E-19 129.5 8.1 79 371-450 6-85 (115)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.8E-15 2.3E-19 128.2 7.1 80 369-451 15-99 (100)
104 2kn4_A Immunoglobulin G-bindin 99.5 1.6E-14 5.6E-19 134.3 9.9 83 370-453 67-153 (158)
105 2la6_A RNA-binding protein FUS 99.5 9.9E-15 3.4E-19 126.3 7.8 80 368-448 8-99 (99)
106 1wex_A Hypothetical protein (r 99.5 1.5E-14 5.3E-19 129.0 9.2 80 370-452 12-93 (104)
107 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.3E-19 129.6 9.2 78 372-451 35-116 (124)
108 2mss_A Protein (musashi1); RNA 99.5 6E-15 2E-19 121.1 5.9 71 375-447 1-75 (75)
109 2cqh_A IGF-II mRNA-binding pro 99.5 8.5E-15 2.9E-19 125.1 7.1 81 369-453 4-86 (93)
110 2ad9_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 134.4 7.5 81 370-453 28-110 (119)
111 1x4e_A RNA binding motif, sing 99.5 3.9E-15 1.3E-19 125.0 4.5 76 371-447 3-82 (85)
112 2ki2_A SS-DNA binding protein 99.5 2.7E-15 9.3E-20 127.2 3.5 77 374-452 2-82 (90)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.6E-15 2.3E-19 120.9 5.5 72 374-447 1-76 (77)
114 2krb_A Eukaryotic translation 99.5 7.6E-15 2.6E-19 122.8 5.9 71 373-444 1-80 (81)
115 2cpd_A Apobec-1 stimulating pr 99.5 6E-14 2E-18 121.4 11.5 79 369-452 11-91 (99)
116 2i2y_A Fusion protein consists 99.5 1.5E-14 5.1E-19 134.2 8.2 82 368-451 68-149 (150)
117 1wez_A HnRNP H', FTP-3, hetero 99.5 1.6E-14 5.6E-19 127.4 8.0 81 368-451 10-93 (102)
118 2jvo_A Nucleolar protein 3; nu 99.5 2.6E-14 9E-19 127.1 9.4 78 370-452 28-105 (108)
119 3d2w_A TAR DNA-binding protein 99.5 3E-14 1E-18 122.6 9.3 80 369-452 7-86 (89)
120 2hgl_A HNRPF protein, heteroge 99.5 1.1E-14 3.9E-19 136.1 7.0 81 367-449 38-124 (136)
121 2dnn_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 128.9 8.6 78 369-449 12-92 (109)
122 2hvz_A Splicing factor, argini 99.5 9.2E-15 3.2E-19 126.7 5.6 77 374-452 1-77 (101)
123 2db1_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 130.6 7.0 78 370-449 14-97 (118)
124 2kvi_A Nuclear polyadenylated 99.5 1.7E-14 5.8E-19 124.6 6.9 78 370-452 7-85 (96)
125 4f02_A Polyadenylate-binding p 99.5 1.2E-14 4.1E-19 142.0 6.6 79 372-451 102-182 (213)
126 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.8E-19 133.9 6.5 85 368-453 42-130 (135)
127 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.3E-19 131.2 7.0 80 370-452 22-104 (112)
128 1wg1_A KIAA1579 protein, homol 99.5 4E-14 1.4E-18 120.4 8.5 77 371-451 3-79 (88)
129 1fj7_A Nucleolin RBD1, protein 99.5 7.7E-15 2.6E-19 127.2 4.0 81 370-453 14-98 (101)
130 1rk8_A CG8781-PA, CG8781-PA pr 99.5 5.1E-14 1.7E-18 133.2 9.9 85 368-453 67-155 (165)
131 2e44_A Insulin-like growth fac 99.5 4.8E-14 1.7E-18 120.8 8.9 81 370-451 12-93 (96)
132 2cpx_A Hypothetical protein FL 99.5 2.8E-14 9.5E-19 126.1 7.2 82 371-453 23-108 (115)
133 1fjc_A Nucleolin RBD2, protein 99.5 4.5E-14 1.6E-18 121.0 7.9 82 369-452 12-93 (96)
134 1wf1_A RNA-binding protein RAL 99.5 4.4E-14 1.5E-18 124.6 8.0 76 371-451 25-101 (110)
135 2e5g_A U6 snRNA-specific termi 99.5 1.2E-13 4E-18 118.7 10.3 80 370-452 5-84 (94)
136 1x5o_A RNA binding motif, sing 99.5 5.9E-14 2E-18 124.1 8.6 80 370-450 22-112 (114)
137 1wf0_A TDP-43, TAR DNA-binding 99.5 5.7E-14 1.9E-18 119.0 7.6 78 371-452 3-80 (88)
138 3q2s_C Cleavage and polyadenyl 99.5 2.9E-14 1E-18 143.0 6.5 78 372-450 67-150 (229)
139 1iqt_A AUF1, heterogeneous nuc 99.5 1.8E-14 6E-19 118.0 4.0 71 375-447 1-75 (75)
140 2xs2_A Deleted in azoospermia- 99.5 2.7E-14 9.2E-19 123.9 5.2 81 370-453 6-89 (102)
141 2cq2_A Hypothetical protein LO 99.5 6.7E-14 2.3E-18 128.1 8.1 78 371-451 23-107 (114)
142 2lmi_A GRSF-1, G-rich sequence 99.5 1.9E-14 6.5E-19 127.1 4.2 80 369-450 7-92 (107)
143 2bz2_A Negative elongation fac 99.5 6.6E-14 2.2E-18 127.5 7.7 78 370-452 36-113 (121)
144 3tyt_A Heterogeneous nuclear r 99.5 1.7E-13 5.7E-18 134.9 11.1 80 371-451 2-81 (205)
145 2hzc_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 115.9 8.4 73 370-446 3-86 (87)
146 2g4b_A Splicing factor U2AF 65 99.5 4.3E-14 1.5E-18 130.7 6.2 77 371-448 92-172 (172)
147 1sjr_A Polypyrimidine tract-bi 99.5 1.4E-13 4.8E-18 133.4 9.7 80 371-451 44-125 (164)
148 1wel_A RNA-binding protein 12; 99.5 1.6E-14 5.4E-19 130.5 2.8 80 369-450 21-104 (124)
149 2fc8_A NCL protein; structure 99.5 1.9E-13 6.5E-18 118.4 9.5 81 368-452 10-94 (102)
150 3egn_A RNA-binding protein 40; 99.5 8.5E-14 2.9E-18 128.2 7.6 83 371-454 43-134 (143)
151 2lcw_A RNA-binding protein FUS 99.2 6.9E-15 2.4E-19 130.9 0.0 82 370-452 4-97 (116)
152 1l3k_A Heterogeneous nuclear r 99.4 8.7E-14 3E-18 131.3 7.2 82 370-453 101-186 (196)
153 1fxl_A Paraneoplastic encephal 99.4 2.8E-13 9.5E-18 123.8 9.8 79 372-451 1-83 (167)
154 2f3j_A RNA and export factor b 99.4 2.6E-13 8.9E-18 131.2 10.0 84 367-451 82-168 (177)
155 1b7f_A Protein (SXL-lethal pro 99.4 2.6E-13 8.8E-18 124.8 9.5 80 372-452 2-85 (168)
156 2dha_A FLJ20171 protein; RRM d 99.4 5.6E-14 1.9E-18 129.3 4.9 77 371-449 21-104 (123)
157 2hgn_A Heterogeneous nuclear r 99.4 4.9E-14 1.7E-18 132.3 4.5 80 370-452 43-125 (139)
158 4f02_A Polyadenylate-binding p 99.4 2.5E-13 8.4E-18 132.7 9.6 78 372-450 14-95 (213)
159 2j8a_A Histone-lysine N-methyl 99.4 2.2E-13 7.5E-18 128.2 8.7 74 374-447 3-93 (136)
160 2dnl_A Cytoplasmic polyadenyla 99.4 3.1E-13 1.1E-17 120.6 9.3 77 369-449 4-87 (114)
161 3md3_A Nuclear and cytoplasmic 99.4 2.3E-13 7.8E-18 124.3 8.6 77 374-451 1-80 (166)
162 2adc_A Polypyrimidine tract-bi 99.4 2E-13 6.9E-18 134.7 8.6 87 363-450 24-110 (229)
163 3beg_B Splicing factor, argini 99.4 1.3E-13 4.5E-18 123.5 6.5 77 370-450 13-94 (115)
164 2dit_A HIV TAT specific factor 99.4 7E-13 2.4E-17 118.1 10.7 84 369-452 11-104 (112)
165 2hgm_A HNRPF protein, heteroge 99.4 1.4E-13 4.8E-18 127.5 6.4 77 370-449 39-120 (126)
166 2pe8_A Splicing factor 45; RRM 99.4 4.8E-13 1.7E-17 119.5 9.6 79 371-449 6-93 (105)
167 3md3_A Nuclear and cytoplasmic 99.4 5.1E-13 1.8E-17 121.9 9.8 80 369-449 83-166 (166)
168 2cjk_A Nuclear polyadenylated 99.4 2.6E-13 8.9E-18 124.9 7.4 77 372-450 86-166 (167)
169 1fje_B Nucleolin RBD12, protei 99.4 2.8E-13 9.7E-18 126.1 7.6 79 370-450 96-174 (175)
170 1l3k_A Heterogeneous nuclear r 99.4 6.8E-13 2.3E-17 125.2 9.9 81 369-451 9-93 (196)
171 3zzy_A Polypyrimidine tract-bi 99.4 8.8E-13 3E-17 123.3 10.4 78 373-452 28-108 (130)
172 2qfj_A FBP-interacting repress 99.4 6.6E-13 2.2E-17 127.1 8.9 81 371-452 123-207 (216)
173 2yh0_A Splicing factor U2AF 65 99.4 8E-13 2.7E-17 124.9 9.2 81 371-452 112-196 (198)
174 2e5i_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 121.1 9.9 75 375-452 27-104 (124)
175 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.3E-12 7.8E-17 114.8 11.3 84 366-452 3-92 (100)
176 3pgw_A U1-A; protein-RNA compl 99.4 1.5E-12 5.1E-17 130.9 11.3 82 369-451 5-91 (282)
177 2voo_A Lupus LA protein; RNA-b 99.4 1.2E-12 4.1E-17 128.0 9.6 76 372-449 108-186 (193)
178 2qfj_A FBP-interacting repress 99.4 7.8E-13 2.7E-17 126.6 8.0 81 371-452 26-110 (216)
179 1b7f_A Protein (SXL-lethal pro 99.4 5.7E-13 2E-17 122.4 6.8 77 370-447 86-168 (168)
180 1qm9_A Polypyrimidine tract-bi 99.4 5.6E-13 1.9E-17 127.0 6.3 79 372-451 2-80 (198)
181 2cjk_A Nuclear polyadenylated 99.4 1.2E-12 4.2E-17 120.4 8.2 76 372-450 2-81 (167)
182 3nmr_A Cugbp ELAV-like family 99.3 1.2E-12 4.2E-17 120.7 8.2 80 372-452 2-90 (175)
183 3pgw_S U1-70K; protein-RNA com 99.3 1.7E-12 5.8E-17 141.9 10.4 81 371-452 100-184 (437)
184 3smz_A Protein raver-1, ribonu 99.3 1.1E-12 3.9E-17 131.9 8.0 83 370-453 181-267 (284)
185 3sde_A Paraspeckle component 1 99.3 9.1E-13 3.1E-17 132.6 6.8 78 372-450 95-179 (261)
186 1fxl_A Paraneoplastic encephal 99.3 8.4E-13 2.9E-17 120.6 5.9 76 371-447 86-167 (167)
187 3nmr_A Cugbp ELAV-like family 99.3 2.3E-12 8E-17 118.8 7.6 77 370-447 92-174 (175)
188 3pgw_A U1-A; protein-RNA compl 99.3 5.4E-12 1.8E-16 126.8 10.8 77 370-448 204-281 (282)
189 2diu_A KIAA0430 protein; struc 99.3 6.8E-12 2.3E-16 112.1 8.5 77 371-454 6-88 (96)
190 2yh0_A Splicing factor U2AF 65 99.3 8.2E-12 2.8E-16 117.9 9.4 78 371-452 2-90 (198)
191 2g4b_A Splicing factor U2AF 65 99.3 9.5E-12 3.3E-16 115.0 9.4 77 371-451 2-89 (172)
192 1jmt_A Splicing factor U2AF 35 99.3 2.4E-12 8.1E-17 114.6 4.3 58 390-447 42-103 (104)
193 2ghp_A U4/U6 snRNA-associated 99.2 1.4E-11 4.9E-16 124.3 9.9 79 370-450 207-291 (292)
194 3sde_A Paraspeckle component 1 99.2 1.3E-11 4.6E-16 124.1 9.5 79 369-450 18-96 (261)
195 3v4m_A Splicing factor U2AF 65 99.2 1.8E-11 6.3E-16 109.2 8.6 79 371-449 3-96 (105)
196 1fje_B Nucleolin RBD12, protei 99.2 7.4E-12 2.5E-16 116.5 5.7 83 368-452 8-93 (175)
197 3s6e_A RNA-binding protein 39; 99.2 2.5E-11 8.7E-16 110.4 8.5 79 371-449 5-92 (114)
198 3ue2_A Poly(U)-binding-splicin 99.2 2.2E-11 7.7E-16 111.3 7.6 78 372-449 19-108 (118)
199 3smz_A Protein raver-1, ribonu 99.2 3.8E-11 1.3E-15 120.8 9.8 80 371-451 93-176 (284)
200 2adc_A Polypyrimidine tract-bi 99.2 3.6E-11 1.2E-15 118.6 8.9 79 370-450 148-228 (229)
201 1qm9_A Polypyrimidine tract-bi 99.2 2E-11 6.8E-16 116.3 6.5 78 371-450 118-197 (198)
202 2ghp_A U4/U6 snRNA-associated 99.2 4E-11 1.4E-15 121.0 8.4 80 372-452 116-199 (292)
203 3tht_A Alkylated DNA repair pr 99.1 8.2E-11 2.8E-15 125.7 10.3 78 368-447 13-96 (345)
204 3tyt_A Heterogeneous nuclear r 99.1 3.6E-11 1.2E-15 118.3 6.1 76 371-447 121-204 (205)
205 2dnr_A Synaptojanin-1; RRM dom 98.7 2.9E-08 1E-12 87.9 9.2 75 371-450 5-86 (91)
206 3dxb_A Thioredoxin N-terminall 98.5 5.5E-08 1.9E-12 95.4 5.8 64 386-449 141-212 (222)
207 1ufw_A Synaptojanin 2; RNP dom 98.4 2.7E-07 9.2E-12 82.4 6.1 75 368-447 10-92 (95)
208 1owx_A Lupus LA protein, SS-B, 98.4 8E-07 2.7E-11 82.3 8.4 76 371-448 16-94 (121)
209 2dhx_A Poly (ADP-ribose) polym 97.4 0.00079 2.7E-08 61.0 9.6 77 369-451 4-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 96.5 0.0062 2.1E-07 56.0 7.6 72 373-447 21-97 (117)
211 2cqe_A KIAA1064 protein; CCCH 96.3 0.0026 8.9E-08 56.7 3.8 21 233-253 15-35 (98)
212 2d9m_A Zinc finger CCCH-type d 96.1 0.0026 8.9E-08 53.8 2.5 23 231-253 20-42 (69)
213 1wwh_A Nucleoporin 35, nucleop 95.9 0.018 6E-07 53.4 7.5 60 387-449 36-96 (119)
214 3p3d_A Nucleoporin 53; structu 95.5 0.012 4E-07 55.5 4.7 69 376-448 11-97 (132)
215 2rhk_C Cleavage and polyadenyl 95.5 0.0029 9.8E-08 53.4 0.5 25 229-253 14-38 (72)
216 1i2t_A HYD protein; four alpha 95.3 0.011 3.8E-07 48.8 3.3 51 8-61 7-57 (61)
217 2d9n_A Cleavage and polyadenyl 95.2 0.0052 1.8E-07 52.2 1.3 24 230-253 9-32 (77)
218 1wey_A Calcipressin 1; structu 95.2 0.027 9.2E-07 51.1 5.9 75 372-448 4-82 (104)
219 1m9o_A Tristetraproline; Cys3H 95.0 0.014 4.9E-07 48.7 3.3 27 227-253 8-35 (77)
220 1nmr_A Poly(A)-binding protein 94.5 0.016 5.5E-07 50.8 2.5 51 8-61 29-79 (85)
221 3d2q_A Muscleblind-like protei 94.4 0.011 3.6E-07 49.5 1.0 22 232-253 7-29 (70)
222 3kuj_A Polyadenylate-binding p 94.4 0.04 1.4E-06 48.6 4.7 52 9-63 27-78 (88)
223 2cqe_A KIAA1064 protein; CCCH 94.3 0.013 4.4E-07 52.2 1.4 23 231-253 36-59 (98)
224 2dyd_A Poly(A)-binding protein 94.2 0.019 6.6E-07 50.3 2.3 51 8-61 28-78 (85)
225 1m9o_A Tristetraproline; Cys3H 93.7 0.012 4E-07 49.2 0.0 24 230-253 49-73 (77)
226 1ifw_A Polyadenylate-binding p 93.6 0.037 1.3E-06 49.2 3.1 53 8-63 26-80 (92)
227 3pq1_A Poly(A) RNA polymerase; 93.3 0.029 9.9E-07 62.4 2.3 56 373-431 53-108 (464)
228 3ctr_A Poly(A)-specific ribonu 93.0 0.096 3.3E-06 47.3 4.8 54 374-433 7-60 (101)
229 3d2n_A Muscleblind-like protei 93.0 0.035 1.2E-06 48.2 1.8 23 231-253 9-32 (83)
230 3d2q_A Muscleblind-like protei 92.9 0.027 9.2E-07 47.0 1.0 23 230-253 41-63 (70)
231 2kn4_A Immunoglobulin G-bindin 92.6 0.045 1.5E-06 50.3 2.2 32 403-434 2-35 (158)
232 1whv_A Poly(A)-specific ribonu 92.5 0.28 9.4E-06 44.2 7.0 56 371-432 14-69 (100)
233 1g9l_A Polyadenylate-binding p 91.7 0.074 2.5E-06 50.7 2.5 51 10-63 74-124 (144)
234 2e5s_A Otthump00000018578; ZF- 91.6 0.042 1.4E-06 49.0 0.7 23 230-253 55-77 (98)
235 2rpp_A Muscleblind-like protei 91.4 0.046 1.6E-06 48.1 0.7 23 231-253 17-40 (89)
236 2e5s_A Otthump00000018578; ZF- 91.2 0.026 8.7E-07 50.4 -1.2 23 231-253 20-43 (98)
237 2d9n_A Cleavage and polyadenyl 89.9 0.075 2.6E-06 45.0 0.6 23 231-254 38-61 (77)
238 3d2n_A Muscleblind-like protei 89.5 0.092 3.2E-06 45.5 0.9 23 230-253 42-64 (83)
239 2rhk_C Cleavage and polyadenyl 89.5 0.077 2.6E-06 44.7 0.4 23 230-253 43-66 (72)
240 2i2y_A Fusion protein consists 88.0 0.15 5.2E-06 46.6 1.3 40 410-450 11-51 (150)
241 1uw4_A UPF3X; nonsense mediate 84.8 2.6 8.7E-05 37.1 7.3 65 374-439 2-72 (91)
242 2rpp_A Muscleblind-like protei 83.9 0.25 8.7E-06 43.4 0.5 23 230-253 50-72 (89)
243 2fc6_A Nuclear, target of EGR1 77.9 0.86 2.9E-05 36.3 1.6 25 229-253 18-43 (50)
244 3d45_A Poly(A)-specific ribonu 67.1 12 0.0004 41.9 8.1 58 371-434 438-495 (507)
245 2l08_A Regulator of nonsense t 62.4 14 0.00048 33.0 6.1 67 372-439 8-80 (97)
246 3v33_A Ribonuclease ZC3H12A; r 38.2 7.3 0.00025 39.5 0.3 24 228-253 189-212 (223)
247 3ts2_A Protein LIN-28 homolog 27.8 14 0.00047 34.9 0.2 29 388-420 1-29 (148)
248 2g0c_A ATP-dependent RNA helic 25.0 1.1E+02 0.0037 24.7 5.2 69 375-448 2-75 (76)
249 3dve_B Voltage-dependent N-typ 24.4 14 0.00049 25.1 -0.2 14 21-34 1-14 (23)
250 3dvk_B Voltage-dependent R-typ 22.2 17 0.00057 24.8 -0.2 14 21-34 2-15 (23)
251 3lcn_C MRNA transport factor G 22.2 66 0.0023 22.8 2.7 13 499-511 8-20 (29)
252 3bee_A Putative YFRE protein; 21.3 1.5E+02 0.0052 24.7 5.6 57 4-60 25-92 (93)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.87 E-value=7.7e-23 Score=208.51 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCC---------CHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC
Q 005082 363 NGSAGIVNPASRQIYLTFPADSTF---------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 363 ~g~~gs~~~~sRtIYVg~~~~~~~---------TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN 433 (715)
|++.++.+..+++|||++|. +.+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|+
T Consensus 124 ~~g~gs~~~~~rtLfVgnL~-~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 124 MGGIGSFRKKNKTLYVGGID-GALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -------CCCCCEEEEECTT-GGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCcCccccCCceeecCCCC-hhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhC
Confidence 66677889999999999985 455 7999999999999999999998 89999999999999999999999
Q ss_pred CceE------------cCeEEEEEecccCCC
Q 005082 434 PHFV------------CDARVLVKPYKEKGK 452 (715)
Q Consensus 434 g~~L------------~GR~I~Vk~A~eK~k 452 (715)
++.| +|+.|.|+|+.++..
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999 999999999987654
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=142.96 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+..++|||+++ +++++|++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||++.|+||.|.|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 55789999998 578999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=7.9e-17 Score=144.27 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
++.+|||++| ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.|+++.|+||+|+|.++.+
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4678999999 578999999999999999999999987 6689999999999999999999999999999999999987
Q ss_pred CCCC
Q 005082 450 KGKV 453 (715)
Q Consensus 450 K~k~ 453 (715)
+...
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=138.90 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||+..|+||+|+|.+
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44578999998 578999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred ccc
Q 005082 447 YKE 449 (715)
Q Consensus 447 A~e 449 (715)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 865
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=133.91 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+....+++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 3 SGSSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCCCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 44577899999988 568999999999999999999999886 6889999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++..
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999987754
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=134.40 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=77.7
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
.++....+++|||+++ ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++ |+++.|+|+.
T Consensus 3 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCCCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 3455678899999998 578999999999999999999999986 689999999999999999999 7999999999
Q ss_pred EEEEecccCCCC
Q 005082 442 VLVKPYKEKGKV 453 (715)
Q Consensus 442 I~Vk~A~eK~k~ 453 (715)
|.|.++.++...
T Consensus 81 l~V~~a~~~~~~ 92 (99)
T 2dgs_A 81 VEVKRAEPRDSK 92 (99)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCccc
Confidence 999999877543
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=138.22 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=72.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhC-CCceEcCeEEEEEe
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFG-eVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~GR~I~Vk~ 446 (715)
|++|||+++ ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++|++.| ++..|+||+|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 589999998 57899999999999999 8999999986 78999999999999999999987 45679999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9877653
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=135.12 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=78.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
.+......++|||+++ ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++
T Consensus 5 ~~~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp SSCSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456678899999998 567999999999999999999999886 68999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 005082 442 VLVKPYKEKGKV 453 (715)
Q Consensus 442 I~Vk~A~eK~k~ 453 (715)
|.|.++.++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999877543
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=4.6e-16 Score=130.08 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+....+++|||+++ ++++++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|++|+
T Consensus 2 ~~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 45678899999998 478999999999999999999999875 6799999999999999999999999999999999
Q ss_pred EEecc
Q 005082 444 VKPYK 448 (715)
Q Consensus 444 Vk~A~ 448 (715)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 10
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=131.70 Aligned_cols=85 Identities=20% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+.+ .+||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44577899999998 578999999999999999999999986 669999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99887654
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=129.31 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
+...+.+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 10 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 355678899999998 578999999999999999999999886 679999999999999999999999999999999
Q ss_pred EEEecc
Q 005082 443 LVKPYK 448 (715)
Q Consensus 443 ~Vk~A~ 448 (715)
+|.+++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 12
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=134.84 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
++......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++
T Consensus 5 ~~~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456678899999998 578999999999999999999999986 67999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 005082 442 VLVKPYKEKGK 452 (715)
Q Consensus 442 I~Vk~A~eK~k 452 (715)
|+|.+++++..
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999987754
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=131.10 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
.....++|||+++ ++++++++|+++|++||+|++|+|+.+ .+||||||+|.+.++|++|++.|+++.|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4567899999998 578999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=131.93 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34567899999998 578999999999999999999999886 6899999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++.++.+.
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999877543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=128.98 Aligned_cols=79 Identities=11% Similarity=0.245 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999998 567999999999999999999999886 5789999999999999999999999999999999999
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8765
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=1.4e-15 Score=126.67 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
.+|||+++ ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|++|+|.++.+
T Consensus 2 ~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999998 568999999999999999999999976 6699999999999999999999999999999999999987
Q ss_pred CC
Q 005082 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 17
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=130.61 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=74.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLr----e~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
....++|||+++ ++++++++|+ ++|++||+|++|+|+.| ..||||||+|.+.++|++|++.||++.|+||+|+|
T Consensus 6 ~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345689999998 5789999999 99999999999999987 33999999999999999999999999999999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.+++++..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99977653
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=131.04 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
...+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 466799999988 567999999999999999999999976 678999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99877543
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=132.85 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
......++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567799999998 568999999999999999999999887 6799999999999999999999999999999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
++++.+.
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876543
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=129.86 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 56799999998 568999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+.++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987754
No 21
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=2.5e-15 Score=133.15 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++.+++++|+++|++||.|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33567899999998 578999999999999999999999986 5689999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999877654
No 22
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=126.82 Aligned_cols=80 Identities=11% Similarity=0.247 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccC-----CCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ-----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~Dr-----sRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
...++|||+++ ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 2 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 35689999998 5789999999999999999999998863 89999999999999999999999999999999999
Q ss_pred ecccCC
Q 005082 446 PYKEKG 451 (715)
Q Consensus 446 ~A~eK~ 451 (715)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=130.65 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=75.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEE-Eeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedV-rIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
..+++|||+++ ++++++++|+++|++||+|++| +|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 46799999998 5679999999999999999999 99886 679999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99877643
No 24
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=1e-15 Score=130.12 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
+.....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|++|+|.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44577899999998 578999999999999999999999975 689999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005082 446 PYKEKGK 452 (715)
Q Consensus 446 ~A~eK~k 452 (715)
+++++..
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987654
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=130.56 Aligned_cols=83 Identities=10% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....+++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3466799999998 568999999999999999999999986 678999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005082 446 PYKEKGK 452 (715)
Q Consensus 446 ~A~eK~k 452 (715)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987754
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=2.1e-15 Score=129.84 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=75.3
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
+++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.++.
T Consensus 2 ~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 689999998 578999999999999999999999986 669999999999999999999999999999999999998
Q ss_pred cCCCCch
Q 005082 449 EKGKVPD 455 (715)
Q Consensus 449 eK~k~~~ 455 (715)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8765443
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.5e-15 Score=133.96 Aligned_cols=77 Identities=8% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
....+.-|||+++ ++.+||++|+++|.+||+|.+++++. +||||||+|.+.++|++|++.||+..|.||.|+|+.+.
T Consensus 3 ~~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 3 MAWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3467889999988 78999999999999999999999988 99999999999999999999999999999999999984
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=131.67 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=77.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCC------CceE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGN------PHFV 437 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LN------g~~L 437 (715)
......++|||+++ ++++|+++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.|| ++.|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34567899999998 578999999999999999999999986 679999999999999999999999 9999
Q ss_pred cCeEEEEEecccCCCC
Q 005082 438 CDARVLVKPYKEKGKV 453 (715)
Q Consensus 438 ~GR~I~Vk~A~eK~k~ 453 (715)
+|+.|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999877543
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=132.35 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=76.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44567899999998 578999999999999999999999985 6799999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.+++.+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 30
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=124.76 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhC-CCceEcCeEEEEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~GR~I~Vk 445 (715)
+......++|||+++ ++++++++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.| +++.|+|++|+|.
T Consensus 6 ~~~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 6 SGEDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CCSCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345677899999998 46799999999999999999999998 7899999999999999999999 9999999999999
Q ss_pred ecc
Q 005082 446 PYK 448 (715)
Q Consensus 446 ~A~ 448 (715)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=128.95 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
..+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56799999998 577999999999999999999999874 4589999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++.+
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=134.13 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=72.6
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCC--eEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCc----e
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGP--VQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----F 436 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGe--VedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~----~ 436 (715)
+.....-+||||+++ ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .
T Consensus 3 ~~~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 3 HHHHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CCSSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred cccCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 344566689999998 678999999999999995 679999987 78999999999999999999999875 6
Q ss_pred EcCeEEEEEeccc
Q 005082 437 VCDARVLVKPYKE 449 (715)
Q Consensus 437 L~GR~I~Vk~A~e 449 (715)
|+||+|.|.+++.
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 9999999999863
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=129.12 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
......++|||+++ ++.+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|+|
T Consensus 11 ~~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 44567899999998 568999999999999999999999986 67899999999999999999999999999999999
Q ss_pred Eecc
Q 005082 445 KPYK 448 (715)
Q Consensus 445 k~A~ 448 (715)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=126.78 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
....+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|+|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3567899999998 567999999999999999999999875 67899999999999999999999999999999999
Q ss_pred Eeccc
Q 005082 445 KPYKE 449 (715)
Q Consensus 445 k~A~e 449 (715)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98764
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=2e-15 Score=134.03 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|+|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999998 578999999999999999999999986 678999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99877543
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=135.15 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
....++|||+++ ++++|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++ ++++.|+|+.|.|++
T Consensus 8 ~~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 356799999988 578999999999999999999999986 789999999999999999999 799999999999998
Q ss_pred ccc
Q 005082 447 YKE 449 (715)
Q Consensus 447 A~e 449 (715)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 37
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=132.83 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHH---HhhccCCCeEEEEeecc-------CCCceEEEEEcCHHHHHHHHHhCCCceEc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVS---NYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLr---e~FSqFGeVedVrIp~D-------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~ 438 (715)
-...+++|||+++ ++++++++|+ ++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+
T Consensus 11 r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3456789999998 5789999999 99999999999999976 45699999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 005082 439 DARVLVKPYKEKG 451 (715)
Q Consensus 439 GR~I~Vk~A~eK~ 451 (715)
|++|+|.++.+|.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998775
No 38
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=4.3e-15 Score=130.62 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=76.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||+++ ++.+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 21 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44567799999998 568999999999999999999999875 6799999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987654
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=131.30 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||+++ ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 18 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 18 QRSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp CCBTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 33466789999988 568999999999999999999999986 5689999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++..
T Consensus 97 V~~a~~~~~ 105 (106)
T 1p27_B 97 VDWCFVRGP 105 (106)
T ss_dssp EEESEESSC
T ss_pred EEeecCCCC
Confidence 999987653
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=136.27 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC--CceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~I~Vk~A 447 (715)
...+++|||+++ ++++||++|+++|++||+|++|+|++ .||||||+|.+.++|++|++.|+ +..|+||+|+|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 466799999998 67899999999999999999999998 58999999999999999999765 58999999999999
Q ss_pred ccCCCCch
Q 005082 448 KEKGKVPD 455 (715)
Q Consensus 448 ~eK~k~~~ 455 (715)
+.+.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 88765543
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=3.5e-15 Score=125.71 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 5 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 4689999998 578999999999999999999999976 67999999999999999999 88999999999999998
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7653
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=130.38 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=75.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 34566799999998 568999999999999999999999986 66899999999999999999999999999999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.++.....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99875543
No 43
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=133.06 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 33567899999998 568999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecccCC
Q 005082 446 PYKEKG 451 (715)
Q Consensus 446 ~A~eK~ 451 (715)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=128.80 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=75.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC-----eE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-----AR 441 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G-----R~ 441 (715)
+......++|||++| ++++|+++|+++|++||+|++|+|+.| |||||+|.+.++|++|++.||++.|+| +.
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 9 PPSRRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCCCSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 344567889999998 588999999999999999999999985 999999999999999999999999999 99
Q ss_pred EEEEecccCCC
Q 005082 442 VLVKPYKEKGK 452 (715)
Q Consensus 442 I~Vk~A~eK~k 452 (715)
|+|+++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999988654
No 45
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=126.58 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=74.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
+.....++|||+++ ++++++++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 3 SGSSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCSSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 34567899999998 5789999999999999999999997 699999999999999999999999999999999999
Q ss_pred ccCCCC
Q 005082 448 KEKGKV 453 (715)
Q Consensus 448 ~eK~k~ 453 (715)
.++.+.
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 877653
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=130.33 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
....++|||+++ ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999998 568999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 005082 448 KEKGKV 453 (715)
Q Consensus 448 ~eK~k~ 453 (715)
.++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 877653
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=4.4e-16 Score=133.09 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=67.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFG--eVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.+|||+++ ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+||.|+|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 58999998 67899999999999999 9999999986 78999999999999999999999999999999999998
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87643
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=129.34 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=75.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeE-EEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE-
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ-DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR- 441 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVe-dVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~- 441 (715)
.....+++|||+++ +++++|++|+++|++||+|+ +|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.
T Consensus 4 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 4 GSSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 44567899999998 56799999999999999999 9999986 67899999999999999999999999999999
Q ss_pred ---EEEEecccCC
Q 005082 442 ---VLVKPYKEKG 451 (715)
Q Consensus 442 ---I~Vk~A~eK~ 451 (715)
|+|.++.+..
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999987654
No 49
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=6.9e-15 Score=130.68 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|.
T Consensus 22 ~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 456789999998 578999999999999999999999986 67999999999999999999996 599999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877653
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=4.9e-15 Score=129.01 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcC---eEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD---ARVL 443 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G---R~I~ 443 (715)
...+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 456899999998 578999999999999999999999986 568999999999999999999999999998 9999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999877643
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=6.9e-16 Score=134.96 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCcceEEEcCCCCC------CCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcC-
Q 005082 371 PASRQIYLTFPADS------TFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD- 439 (715)
Q Consensus 371 ~~sRtIYVg~~~~~------~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G- 439 (715)
..+++|||++++ + ++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|
T Consensus 4 ~~~~~vfV~nLp-~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAP-VIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCC-CCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCC-cCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 346899999995 7 8999999999999999999999986 679999999999999999999999999999
Q ss_pred eEEEEEecccC
Q 005082 440 ARVLVKPYKEK 450 (715)
Q Consensus 440 R~I~Vk~A~eK 450 (715)
|.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 52
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-15 Score=125.34 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=75.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+......++|||+++ ++++++++|+++|++| .|.+|+|+++ ++||||||+|.+.++|++|++ ||++.|+||.|.
T Consensus 4 ~~~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 345567899999998 5789999999999999 9999999986 679999999999999999999 999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++.+
T Consensus 81 v~~a~~~~~ 89 (91)
T 2dgw_A 81 VFREKSGPS 89 (91)
T ss_dssp EEEESSCCC
T ss_pred EEECCcCCC
Confidence 999987753
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=130.84 Aligned_cols=84 Identities=31% Similarity=0.436 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34577899999988 578999999999999999999999986 6789999999999999999999 99999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877654
No 54
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=130.24 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=75.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.....+++|||+++ ++++++++|+++|++||.|. ++++.+++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34566899999998 67899999999999999997 88888889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
.++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87754
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=3e-15 Score=130.54 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceE---cCe
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDA 440 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L---~GR 440 (715)
......++|||+++ +++++|++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||+..+ .|+
T Consensus 8 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 45677899999998 578999999999999999999999986 6899999999999999999999999988 999
Q ss_pred EEEEEecccCCC
Q 005082 441 RVLVKPYKEKGK 452 (715)
Q Consensus 441 ~I~Vk~A~eK~k 452 (715)
+|.|+++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=130.14 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++||++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.|++ .|+|++|+
T Consensus 12 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 44577899999998 578999999999999999999999986 6899999999999999999999997 89999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++..+.+
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-15 Score=128.34 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=76.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhC-CCceEcCeE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDAR 441 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~GR~ 441 (715)
......++|||+++ ++.+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.| |++.|+|+.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34567899999998 568999999999999999999999875 57999999999999999999999 999999999
Q ss_pred EEEEecccCCCC
Q 005082 442 VLVKPYKEKGKV 453 (715)
Q Consensus 442 I~Vk~A~eK~k~ 453 (715)
|.|.++.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999877543
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=7.2e-15 Score=123.83 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 3467899999998 578999999999999999999999976 5699999999999999999976 889999999999
Q ss_pred Eec
Q 005082 445 KPY 447 (715)
Q Consensus 445 k~A 447 (715)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=5.5e-15 Score=129.08 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=74.1
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+......++|||+++ ++.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 355677899999998 578999999999999999999999986 6799999999999999999999999999999999
Q ss_pred EEecc
Q 005082 444 VKPYK 448 (715)
Q Consensus 444 Vk~A~ 448 (715)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=126.95 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
....++|||+++ ++++++++|+++|++|| |++|+|+.+ ++||||||+|.+.++|++|+ .||++.|+|+.|.|
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 456799999988 57899999999999999 999999976 45999999999999999999 88999999999999
Q ss_pred EecccCCCC
Q 005082 445 KPYKEKGKV 453 (715)
Q Consensus 445 k~A~eK~k~ 453 (715)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999877543
No 61
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=4.9e-15 Score=134.12 Aligned_cols=80 Identities=10% Similarity=-0.036 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFG-eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.+...+|||+++ ++++++++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+||.|+|.++.
T Consensus 25 p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 355689999998 58999999999999999 9999999877799999999999999999999999999999999999986
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 62
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1e-14 Score=127.07 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++++++|+++|++|| |++|+|+++ ++||||||+|.+.++|++|+ .||++.|+|++|+
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34567799999998 67899999999999997 999999986 56899999999999999999 8899999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987654
No 63
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.9e-15 Score=129.80 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..+++|||+++ ++++++++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.||++.|+|++|+|.++++|
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45789999998 56899999999999999999999996 8999999999999999999999999999999999998764
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=142.32 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFG--eVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
...++|||++| ++++||++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+||.|.|
T Consensus 53 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 45689999998 67899999999999999 9999999986 77999999999999999999999999999999999
Q ss_pred EecccCC
Q 005082 445 KPYKEKG 451 (715)
Q Consensus 445 k~A~eK~ 451 (715)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9997654
No 65
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=123.71 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
......++|||+++ ++++++++|+++|++||+|++|+|+ |+||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 5 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 5 SSGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 44577899999998 5789999999999999999999997 469999999999999999999999999999999999
Q ss_pred ccCCCC
Q 005082 448 KEKGKV 453 (715)
Q Consensus 448 ~eK~k~ 453 (715)
+++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 877543
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=135.03 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||+++ +++++|++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3466799999998 578999999999999999999999986 56999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 005082 445 KPYKEKGKV 453 (715)
Q Consensus 445 k~A~eK~k~ 453 (715)
.+++++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999877654
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=130.92 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=78.5
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
.+.....+++|||+++ ++.+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|
T Consensus 28 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 28 GGEGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCCCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3455677899999998 578999999999999999999999986 689999999999999999999999999999999
Q ss_pred EEEecccCCCC
Q 005082 443 LVKPYKEKGKV 453 (715)
Q Consensus 443 ~Vk~A~eK~k~ 453 (715)
+|.++..+...
T Consensus 107 ~V~~a~~~~~~ 117 (124)
T 2kt5_A 107 DIQLVASQIDL 117 (124)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeCCCCCC
Confidence 99999876543
No 68
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=124.82 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
...+++|||++ +++|+++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.||++.|+|++|.|.++.+
T Consensus 12 ~~~~~~l~V~n---~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEEC---SSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcC---CCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35678999997 4899999999999999999999975 899999999999999999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+..
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=6.8e-15 Score=130.87 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 37 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 466799999998 567999999999999999999999876 679999999999999999999999999999999999
Q ss_pred ecc
Q 005082 446 PYK 448 (715)
Q Consensus 446 ~A~ 448 (715)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 864
No 70
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=131.91 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
+......++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 57 ~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345677899999998 567999999999999999999999886 679999999999999999999999999999999
Q ss_pred EEEec
Q 005082 443 LVKPY 447 (715)
Q Consensus 443 ~Vk~A 447 (715)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 71
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=132.54 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=74.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
...+.+++|||+++ ++++++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 5 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 5 SSGRSKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp GTSEEEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34556789999998 57899999999999999999999997 8999999999999999999999999999999999998
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
..+.
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7653
No 72
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=4.8e-15 Score=127.05 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLr----e~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.+.+++|||+++ ++++++++|+ ++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 5 ~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 467899999998 5789999999 99999999999999854 68999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 005082 445 KPYKEKGKV 453 (715)
Q Consensus 445 k~A~eK~k~ 453 (715)
.++.++.+.
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999887653
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-15 Score=131.93 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
+..+++|||+++ ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 5 DRSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CCCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456799999998 578999999999999999999999976 568999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005082 446 PYKEKGK 452 (715)
Q Consensus 446 ~A~eK~k 452 (715)
++.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987653
No 74
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=130.05 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=76.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeE--------EEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCce
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--------DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVe--------dVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~ 436 (715)
....+++|||+++ ++++|+++|+++|++||.|. .|+|+.| ++||||||+|.+.++|++|++.||++.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3467899999998 57899999999999999999 6999886 679999999999999999999999999
Q ss_pred EcCeEEEEEecccCCCC
Q 005082 437 VCDARVLVKPYKEKGKV 453 (715)
Q Consensus 437 L~GR~I~Vk~A~eK~k~ 453 (715)
|+|+.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999877643
No 75
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=1.4e-14 Score=126.40 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
......+++|||+++ ++++|+++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 5 ~~~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 344567899999998 5679999999999999999999996 58999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 005082 447 YKEKGKVP 454 (715)
Q Consensus 447 A~eK~k~~ 454 (715)
+.++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98776543
No 76
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=127.19 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=74.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++++++|+++|++||.|.+|+++.+ ++||||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 10 SGKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45667799999998 678999999999999999998888765 6789999999999999999999999999999999
Q ss_pred EEecccC
Q 005082 444 VKPYKEK 450 (715)
Q Consensus 444 Vk~A~eK 450 (715)
|.++..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 77
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=132.35 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC--ceEcCeEEEEEecc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg--~~L~GR~I~Vk~A~ 448 (715)
..+++|||++++..++||++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.||+ ..|+||+|.|.+++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 46789999998532899999999999999999999998 679999999999999999998774 56999999999998
Q ss_pred cCC
Q 005082 449 EKG 451 (715)
Q Consensus 449 eK~ 451 (715)
.+.
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=129.14 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhC--CCceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~L--Ng~~L~GR~I~Vk~A 447 (715)
...+++|||++++ +++||++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.| ++..|+||+|.|.++
T Consensus 12 ~~p~~~l~V~nLp-~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLP-GEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCC-TTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 3567899999984 7999999999999999999999998 5999999999999999999976 578899999999999
Q ss_pred ccCCCC
Q 005082 448 KEKGKV 453 (715)
Q Consensus 448 ~eK~k~ 453 (715)
+.+...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 79
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=126.86 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.....+++|||+++ ++++|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.|+++.|+|++|+|.++
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 10 KTFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34567789999998 56799999999999999999999997 6999999999999999999999999999999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87653
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=5.7e-15 Score=135.69 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=76.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||+++ ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||+..|+|++|+
T Consensus 41 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33567799999988 568999999999999999999999986 7899999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.++.+++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999987753
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=131.79 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
...++|||+++ ++++++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45789999998 568999999999999999999999986 68899999999999999999999999999999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=125.15 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc--CeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC--DARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~--GR~I~Vk~A 447 (715)
...+++|||+++ ++++|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||++.|+ |++|.|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 456789999988 56799999999999999999999998 5899999999999999999999999999 999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87753
No 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.1e-15 Score=131.17 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|+ .||++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 45689999998 578999999999999999999999975 67999999999999999999 8899999999999999
Q ss_pred cccC
Q 005082 447 YKEK 450 (715)
Q Consensus 447 A~eK 450 (715)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 84
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=128.17 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
....++|||+++ ++++++++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+++.|+|++|+|.++++
T Consensus 22 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 456789999988 56899999999999999999999998 499999999999999999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 85
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=124.44 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....+++|||+++ ++++|+++|+++|++||+| +|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 45667899999998 5679999999999999987 45554 78999999999999999999999999999999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.++.++.+
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987754
No 86
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=128.00 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=72.8
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed-VrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||++| ++++||++|+++|++||.|.+ |+|+++ ++||||||+|.+.++|++|++. +++.|+||.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999988 689999999999999999998 999876 7899999999999999999998 999999999999
Q ss_pred EecccC
Q 005082 445 KPYKEK 450 (715)
Q Consensus 445 k~A~eK 450 (715)
.++.++
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 987654
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=129.03 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34589999998 578999999999999999999999986 6799999999999999999998 99999999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
+.++.+.
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887653
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-15 Score=128.59 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCC------CHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCe-
Q 005082 370 NPASRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA- 440 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~------TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR- 440 (715)
...+++|||++++ +.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 12 ~~~~~~l~V~nLp-~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVP-QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCC-CCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCC-cchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3457899999996 566 78999999999999999999853 7899999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 005082 441 RVLVKPYKEKGK 452 (715)
Q Consensus 441 ~I~Vk~A~eK~k 452 (715)
+|+|.++....+
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999976543
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=9.7e-15 Score=131.28 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=77.3
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||+++ ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45567899999998 578999999999999999999999876 6799999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++..+...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999877654
No 90
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=130.71 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++.+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+
T Consensus 21 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34567899999998 567999999999999999999999976 6689999999999999999999999999999999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|.++++|.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998774
No 91
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.7e-15 Score=130.60 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=73.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCe-EEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeV-edVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||++| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++||+. |++.|+||.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3567799999998 6889999999999999999 89999986 7899999999999999999998 999999999999
Q ss_pred EecccC
Q 005082 445 KPYKEK 450 (715)
Q Consensus 445 k~A~eK 450 (715)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.6e-14 Score=124.20 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. ++.|+|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred ccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3466789999998 678999999999999999999999986 6689999999999999999995 78999999999
Q ss_pred EecccCCCC
Q 005082 445 KPYKEKGKV 453 (715)
Q Consensus 445 k~A~eK~k~ 453 (715)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887653
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7e-15 Score=127.79 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhcc-CCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCce-EcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSI-YGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHF-VCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSq-FGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~-L~GR~I~V 444 (715)
...+++|||+++ ++++|+++|+++|++ ||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999998 578999999999999 999999999986 679999999999999999999999999 99999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977654
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-15 Score=137.05 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--EEeecc----CCCceEEEEEcCHHHHHHHHHhCCCc----eE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FV 437 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed--VrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~----~L 437 (715)
.....+++|||++| ++++||++|+++|++||+|.. |+|++| ++||||||+|.+. +|++|++.||++ .|
T Consensus 18 ~~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 34467789999998 678999999999999999977 999987 6899999999999 999999999999 99
Q ss_pred cCeEEEEEecccCCCC
Q 005082 438 CDARVLVKPYKEKGKV 453 (715)
Q Consensus 438 ~GR~I~Vk~A~eK~k~ 453 (715)
+||+|.|+++.++.+.
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 95
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=1.5e-14 Score=134.99 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
...+++|||++| ++++||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 36 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356799999998 578999999999999999999999986 578999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=134.56 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLr----e~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
...+++|||+++ ++++++++|+ ++|++||+|++|+|+.. ++||||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 455789999998 5789999876 69999999999999875 89999999999999999999999999999999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.+++.+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987653
No 97
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=2.2e-14 Score=124.95 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCCcceEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 368 IVNPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~-~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...+.+++|||+++ ++ ++++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577899999998 45 8999999999999999999999 479999999999999999999999999999999999
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=3.9e-15 Score=127.18 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=69.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
...+..++|||+++ ++++|+++|+++|++||.|++|+++.+ ++||||||+|.+.++|++|++.||++.|+||+|+
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 10 SGKPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp -----CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 33456799999998 578999999999999999999988875 6789999999999999999999999999999999
Q ss_pred EEecc
Q 005082 444 VKPYK 448 (715)
Q Consensus 444 Vk~A~ 448 (715)
|..+.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99865
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=129.49 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCc--eEcCeEEEEEe
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH--FVCDARVLVKP 446 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~--~L~GR~I~Vk~ 446 (715)
....+++|||+++ ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.|++. .|.||+|.|.+
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3567899999998 57899999999999999999999997 7999999999999999999998865 48899999999
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
++.|.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 87664
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=122.12 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
....++|||+++ ++++|+++|+++|++||+|++|+|+ ++||||+|.+.++|++|++.||++.|+|++|+|.++.+
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 467899999998 5689999999999999999999997 46999999999999999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+.+
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=127.22 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCC-eEEEEee-cc----CCCceEEEEEcCHHHHHHHHHhCC--CceEcCeE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIP-YQ----QKRMFGFVTFVYPETVKIILAKGN--PHFVCDAR 441 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGe-VedVrIp-~D----rsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~ 441 (715)
...+++|||+++ ++++|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..|+|+.
T Consensus 5 s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 356799999998 578999999999999999 9999998 44 689999999999999999999996 59999999
Q ss_pred EEEEecccCCCC
Q 005082 442 VLVKPYKEKGKV 453 (715)
Q Consensus 442 I~Vk~A~eK~k~ 453 (715)
|+|.++.++...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999887653
No 102
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=8.9e-15 Score=129.55 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
..+++|||+++ ++++++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999998 578999999999999999999999987 7799999999999999999999999999999999999975
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=128.20 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....++|||+++ ++++++++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .|+++.|+|+.|+
T Consensus 15 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3466799999998 57899999999999999 999999875 47999999999999999999 8899999999999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=1.6e-14 Score=134.33 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=76.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 67 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456789999998 678999999999999999999999986 789999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876543
No 105
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=9.9e-15 Score=126.27 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=73.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEeecc----CCCceEEEEEcCHHHHHHHHHhCCCc
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH 435 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed--------VrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~ 435 (715)
......++|||+++ ++++++++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 44567899999998 578999999999999999999 999886 66899999999999999999999999
Q ss_pred eEcCeEEEEEecc
Q 005082 436 FVCDARVLVKPYK 448 (715)
Q Consensus 436 ~L~GR~I~Vk~A~ 448 (715)
.|+|+.|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=129.02 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC--ceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg--~~L~GR~I~Vk~A 447 (715)
...+++|||+++ +++++|++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|++ ..|+|++|+|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456799999998 57899999999999999999999998 699999999999999999998754 5699999999999
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.6e-14 Score=129.60 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=71.6
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 35 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4689999998 577999999999999999999999875 67999999999999999999 78999999999999998
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
....
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 108
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=6e-15 Score=121.09 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
+|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ |+++.|+|++|.|+++
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899988 578999999999999999999999875 679999999999999999998 7999999999999875
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.5e-15 Score=125.08 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCC-eEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC-ceEcCeEEEEEe
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKP 446 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGe-VedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg-~~L~GR~I~Vk~ 446 (715)
.....++|||+++ ++++|+++|+++|++||+ |..+.+. +||||||+|.+.++|++|++.||+ +.|+|+.|+|.+
T Consensus 4 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3567799999998 578999999999999999 6666663 699999999999999999999999 999999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
+.++...
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9877543
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=134.44 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC--CceEcCeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~I~Vk~A 447 (715)
...+++|||+++ ++++||++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.|+ +..|+||+|+|.++
T Consensus 28 ~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456799999998 57899999999999999999999998 58999999999999999999876 46899999999999
Q ss_pred ccCCCC
Q 005082 448 KEKGKV 453 (715)
Q Consensus 448 ~eK~k~ 453 (715)
+.+...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 877654
No 111
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-15 Score=124.96 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..+++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 56799999998 578999999999999999999999886 6799999999999999999999999999999998876
Q ss_pred c
Q 005082 447 Y 447 (715)
Q Consensus 447 A 447 (715)
.
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=2.7e-15 Score=127.19 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=68.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
|+|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.+ |++|++.||++.|+|+.|.|+++.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999988 578999999999999999999999986 67999999999999 9999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.6e-15 Score=120.90 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=67.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.++ +.|+|++|.|+++
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999998 578999999999999999999999886 679999999999999999999998 9999999999986
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=7.6e-15 Score=122.84 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=65.1
Q ss_pred cceEEEcCCCCCCC------CHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCe-EEE
Q 005082 373 SRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVL 443 (715)
Q Consensus 373 sRtIYVg~~~~~~~------TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR-~I~ 443 (715)
+++|||++++ +.+ ++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ +|+
T Consensus 1 ~~~l~V~nLp-~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVP-QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCC-CCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCC-CCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 4799999995 566 78999999999999999999854 7899999999999999999999999999999 887
Q ss_pred E
Q 005082 444 V 444 (715)
Q Consensus 444 V 444 (715)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6e-14 Score=121.36 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=72.0
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccC--CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqF--GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
....+++|||+++ ++++|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467799999998 5679999999999999 999999884 69999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 116
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=1.5e-14 Score=134.24 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=75.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
......++|||+++ ++++|+++|+++|++||+|++|+|+.+ +||||||+|.+.++|++|++.||++.|+|++|+|.++
T Consensus 68 ~~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 68 DSCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34567799999998 578999999999999999999999986 7999999999999999999999999999999999999
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
.+++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 117
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=127.43 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=72.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
......++|||++| ++++||++|+++|++||.| +|+|++| ++||||||+|.+.++|++||+ +|++.|+||.|+|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 44567789999988 6899999999999999955 9999987 789999999999999999995 6999999999999
Q ss_pred EecccCC
Q 005082 445 KPYKEKG 451 (715)
Q Consensus 445 k~A~eK~ 451 (715)
.++.+..
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887554
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=2.6e-14 Score=127.14 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
...+++|||+++ ++++|+++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.||++.|+|+.|.|.++.+
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 467799999998 6789999999999999999999997 79999999999999999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+.+
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 119
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3e-14 Score=122.64 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=63.5
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
......+|||+++ ++++||++|+++|++||+|++|+|+++ +||||||+|.+.++|+++. . ..+.++|++|.|+++.
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcC
Confidence 4567789999988 689999999999999999999999985 8999999999999998532 2 2445679999999998
Q ss_pred cCCC
Q 005082 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
+|..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=1.1e-14 Score=136.06 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCe
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGe---VedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR 440 (715)
+......++|||++| +|++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ ||++.|+||
T Consensus 38 ~~~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 344567889999998 689999999999999999 899999986 789999999999999999999 899999999
Q ss_pred EEEEEeccc
Q 005082 441 RVLVKPYKE 449 (715)
Q Consensus 441 ~I~Vk~A~e 449 (715)
.|+|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999854
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=128.92 Aligned_cols=78 Identities=24% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
.....++|||++| +|++||++|+++|++| .|++|+|++| ++||||||+|.+.++|++|| .||++.|+||.|.|.
T Consensus 12 ~~~~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 3445679999998 6899999999999999 8999999986 78999999999999999999 579999999999999
Q ss_pred eccc
Q 005082 446 PYKE 449 (715)
Q Consensus 446 ~A~e 449 (715)
++.+
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8754
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=126.65 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCCC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 452 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~k 452 (715)
.+|||+++ ++++|+++|+++|++||+|++|+|+.+ +||||||+|.+.++|++|++.|+++.|+|+.|.|.+++++.+
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 48999988 568999999999999999999999987 899999999999999999999999999999999999987753
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.4e-14 Score=130.59 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGe---VedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
....++|||++| +|++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++||+ ||++.|+||.|+
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999988 689999999999999999 899999986 779999999999999999999 799999999999
Q ss_pred EEeccc
Q 005082 444 VKPYKE 449 (715)
Q Consensus 444 Vk~A~e 449 (715)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998854
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.7e-14 Score=124.59 Aligned_cols=78 Identities=18% Similarity=0.402 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 370 NPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~-~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
...+++|||+++ ++ ++++++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 466899999998 45 89999999999999999999995 7999999999999999999999999999999999998
Q ss_pred cCCC
Q 005082 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
.+.+
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=1.2e-14 Score=141.98 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=73.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
..++|||+++ ++++|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||++.|+||+|.|+++.+
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4578999988 578999999999999999999999987 6799999999999999999999999999999999999976
Q ss_pred CC
Q 005082 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
|.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.4e-14 Score=133.88 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
......++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.
T Consensus 42 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 42 PDVEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp SSGGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44566789999998 568999999999999999999999876 7899999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.+++++.+.
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876554
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=131.20 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC--CceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~-~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN--g~~L~GR~I~Vk~ 446 (715)
...+++|||+++ +++ +||++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++.|+ +..|+||+|+|.+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345799999998 566 99999999999999999999987 89999999999999999999774 5679999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+..+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976654
No 128
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=4e-14 Score=120.39 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
+.+++|||+++ ++++++++|+++|++| +|.+|+|+ ++||||||+|.+.++|++|++.||+..|+|++|+|.++..+
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 56789999998 5789999999999999 99999996 59999999999999999999999999999999999998654
Q ss_pred C
Q 005082 451 G 451 (715)
Q Consensus 451 ~ 451 (715)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=7.7e-15 Score=127.16 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++|+++|+++|++||.|.. +++.+ ++||||||+|.+.++|++|++ ||++.|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 456789999998 578999999999999999988 55554 789999999999999999999 89999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99877654
No 130
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.50 E-value=5.1e-14 Score=133.24 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||++| ++.+++++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++||+.||++.|+|+.|.
T Consensus 67 ~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 67 QRSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCC-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566789999998 568999999999999999999999986 5689999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 005082 444 VKPYKEKGKV 453 (715)
Q Consensus 444 Vk~A~eK~k~ 453 (715)
|.++..+...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999877653
No 131
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=120.81 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=74.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEE-eeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVR-IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVr-Ip~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
...+++|||+++ ++++++++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||++.|+|++|.|.++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345789999998 57899999999999999999995 8888777789999999999999999999999999999999998
Q ss_pred cCC
Q 005082 449 EKG 451 (715)
Q Consensus 449 eK~ 451 (715)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-14 Score=126.14 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCe----EEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeV----edVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..+++|||+++ ++++|+++|+++|++||.| ..++++..++||||||+|.+.++|++|++.|+++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 46789999998 5789999999999999999 566666668999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9877543
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=4.5e-14 Score=120.99 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=72.8
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
.....++|||+++ ++.+++++|+++|++||+|..| ....++||||||+|.+.++|++|++.|+++.|+|+.|.|.++.
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3466799999998 5789999999999999999887 3334789999999999999999999999999999999999998
Q ss_pred cCCC
Q 005082 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=4.4e-14 Score=124.60 Aligned_cols=76 Identities=14% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~-~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
..+++|||+++ +++ +++++|+++|++||+|++|+| +||||||+|.+.++|++|++.|+++.|+|+.|.|.++.+
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 45689999998 456 999999999999999999999 689999999999999999999999999999999999975
Q ss_pred CC
Q 005082 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 135
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=118.67 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
....++|||+++ ++++|+++|+++|++||+|.+|.+.....+ ||||+|.+.++|++|++ ||++.|+|+.|.|+++.+
T Consensus 5 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 456789999998 578999999999999999999822222233 99999999999999999 999999999999998876
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.9e-14 Score=124.07 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceE--------c
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFV--------C 438 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L--------~ 438 (715)
....++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..| .
T Consensus 22 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 456789999998 568999999999999999999999986 6789999999999999999999999999 6
Q ss_pred CeEEEEEecccC
Q 005082 439 DARVLVKPYKEK 450 (715)
Q Consensus 439 GR~I~Vk~A~eK 450 (715)
++.|.|+++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999998765
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.7e-14 Score=119.03 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..+++|||+++ +++++|++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...++|++|.|.++.++
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 45799999988 678999999999999999999999985 899999999999999875433 46679999999999877
Q ss_pred CC
Q 005082 451 GK 452 (715)
Q Consensus 451 ~k 452 (715)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=2.9e-14 Score=143.01 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=71.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFG--eVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
..++|||++| .+++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 5679999998 68899999999999999 9999999987 689999999999999999999999999999999999
Q ss_pred ecccC
Q 005082 446 PYKEK 450 (715)
Q Consensus 446 ~A~eK 450 (715)
+++.+
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98754
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=1.8e-14 Score=118.03 Aligned_cols=71 Identities=30% Similarity=0.469 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
+|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|+++
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999988 578999999999999999999999875 6799999999999999999997 899999999999875
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=2.7e-14 Score=123.92 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...+++|||+++ ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++ +++.|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 356789999998 578999999999999999999999986 678999999999999999998 89999999999999
Q ss_pred cccCCCC
Q 005082 447 YKEKGKV 453 (715)
Q Consensus 447 A~eK~k~ 453 (715)
+..+...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9877654
No 141
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.7e-14 Score=128.10 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCcceEEE--cCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceE-----cCeEEE
Q 005082 371 PASRQIYL--TFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV-----CDARVL 443 (715)
Q Consensus 371 ~~sRtIYV--g~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L-----~GR~I~ 443 (715)
..+++||| +++ ++++||++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||++.| .|++|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 44688999 666 68899999999999999999999987 689999999999999999999999999 799999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|..+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99886543
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=127.06 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGe---VedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
.....++|||+++ +|++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ |+++.|+||.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999988 689999999999999998 999999986 789999999999999999999 79999999999
Q ss_pred EEEecccC
Q 005082 443 LVKPYKEK 450 (715)
Q Consensus 443 ~Vk~A~eK 450 (715)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998653
No 143
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=6.6e-14 Score=127.46 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
...+++|||++ +++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||++.|+|+.|.|.++.+
T Consensus 36 ~~~~~~lfVgn---l~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEEC---SSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcC---CCCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 35678999997 4699999999999999999999985 999999999999999999999999999999999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 144
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.7e-13 Score=134.92 Aligned_cols=80 Identities=20% Similarity=0.195 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
..+++|||++++.+++|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|++|++.||++.|.|+.|+|.+++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 357899999997689999999999999999999999986 5899999999999999999999999999999999998755
Q ss_pred C
Q 005082 451 G 451 (715)
Q Consensus 451 ~ 451 (715)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 4
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.2e-13 Score=115.95 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqF----G-------eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~ 438 (715)
.+..++|||+++ ++++++++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .||++.|+
T Consensus 3 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 356799999998 5789999999999999 8 999999997 6999999999999999999 89999999
Q ss_pred CeEEEEEe
Q 005082 439 DARVLVKP 446 (715)
Q Consensus 439 GR~I~Vk~ 446 (715)
|+.|+|++
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=4.3e-14 Score=130.73 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|++
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45799999998 568999999999999999999999886 5689999999999999999999999999999999998
Q ss_pred cc
Q 005082 447 YK 448 (715)
Q Consensus 447 A~ 448 (715)
+.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=1.4e-13 Score=133.41 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC--eEEEEEecc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~Vk~A~ 448 (715)
....+|||+++ .|.+||++|+++|++||+|++|+|..+++||||||+|.+.++|++|++.||+..|+| ++|+|.+++
T Consensus 44 s~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 33467999988 689999999999999999999999876778999999999999999999999999976 999999998
Q ss_pred cCC
Q 005082 449 EKG 451 (715)
Q Consensus 449 eK~ 451 (715)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 774
No 148
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-14 Score=130.48 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=71.0
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||++| ++++|+++|+++|++||.|.+|.++.+ ++||||||+|.+.++|++||+ ||++.|+||.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3456789999998 689999999999999999998555443 789999999999999999999 8999999999999
Q ss_pred EecccC
Q 005082 445 KPYKEK 450 (715)
Q Consensus 445 k~A~eK 450 (715)
.++.++
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998764
No 149
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=118.35 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....+++|||+++ ++++|+++|+++|++|+ +|+++.+ ++||||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34567899999988 57899999999999885 5556554 6789999999999999999999999999999999
Q ss_pred EEecccCCC
Q 005082 444 VKPYKEKGK 452 (715)
Q Consensus 444 Vk~A~eK~k 452 (715)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987754
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=8.5e-14 Score=128.16 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEeec-cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPY-QQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed--------VrIp~-DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
..+++|||+++ ++++|+++|+++|++||.|.. |++.. .++||||||+|.+.++|.+|++.||+..|+|+.
T Consensus 43 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45689999998 578999999999999999976 44443 389999999999999999999999999999999
Q ss_pred EEEEecccCCCCc
Q 005082 442 VLVKPYKEKGKVP 454 (715)
Q Consensus 442 I~Vk~A~eK~k~~ 454 (715)
|.|.+++.+....
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999997765443
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=6.9e-15 Score=130.93 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVed--------VrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L 437 (715)
...+++|||+++ ++++++++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||++.|
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 356789999998 578999999999999999999 889876 6799999999999999999999999999
Q ss_pred cCeEEEEEecccCCC
Q 005082 438 CDARVLVKPYKEKGK 452 (715)
Q Consensus 438 ~GR~I~Vk~A~eK~k 452 (715)
+|++|.|.++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999887643
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.44 E-value=8.7e-14 Score=131.30 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++|+++|+++|++||.|++|+|+.| +++|||||+|.+.++|.+|++. +++.|+|+.|.|.
T Consensus 101 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 101 HLTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp --CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345689999998 568999999999999999999999986 5799999999999999999998 8999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 179 ~a~~k~~~ 186 (196)
T 1l3k_A 179 KALSKQEM 186 (196)
T ss_dssp ECC-----
T ss_pred ecCChhHh
Confidence 99887654
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.8e-13 Score=123.82 Aligned_cols=79 Identities=13% Similarity=0.282 Sum_probs=72.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
++++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 1 s~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 3689999998 568999999999999999999999885 56799999999999999999999999999999999998
Q ss_pred ccCC
Q 005082 448 KEKG 451 (715)
Q Consensus 448 ~eK~ 451 (715)
.++.
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2.6e-13 Score=131.19 Aligned_cols=84 Identities=10% Similarity=0.085 Sum_probs=76.6
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+.....+++|||+++ ++.+++++|+++|++||+|++|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 82 ~~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 82 GEGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CSSCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 455677899999998 578999999999999999999999986 6899999999999999999999999999999999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|.++....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99987653
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=2.6e-13 Score=124.75 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=73.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.+++|||+++ ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4689999998 568999999999999999999999876 57899999999999999999999999999999999998
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 76653
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.6e-14 Score=129.29 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCe----EEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeV----edVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
...++|||++| +|++||++|+++|++||+| .+|+|++| ++||||||+|.+.++|++||+. +++.|.||.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 45689999998 6899999999999999986 69999986 7899999999999999999998 99999999999
Q ss_pred EEeccc
Q 005082 444 VKPYKE 449 (715)
Q Consensus 444 Vk~A~e 449 (715)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=4.9e-14 Score=132.31 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
....++|||++| +|++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|| .+|++.|+||.|.|.+
T Consensus 43 ~~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 356689999988 68999999999999999 779999987 78999999999999999999 6799999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+..+..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 877654
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=2.5e-13 Score=132.66 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..+||||++| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|+|.++
T Consensus 14 p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999998 678999999999999999999999986 78999999999999999999999999999999999987
Q ss_pred ccC
Q 005082 448 KEK 450 (715)
Q Consensus 448 ~eK 450 (715)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.2e-13 Score=128.17 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=65.6
Q ss_pred ceEEEcCC---CCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcC----HHH----HHHHHH--hCCCce
Q 005082 374 RQIYLTFP---ADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVY----PET----VKIILA--KGNPHF 436 (715)
Q Consensus 374 RtIYVg~~---~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~----~E~----Ae~ALe--~LNg~~ 436 (715)
.+|||+++ .+|.++|.+|++||++||+|.+|+++.| ++||||||+|.+ +++ |.+|+. .||++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999987 3689999999999999999999999998 899999999996 433 888988 789999
Q ss_pred EcCeEEEEEec
Q 005082 437 VCDARVLVKPY 447 (715)
Q Consensus 437 L~GR~I~Vk~A 447 (715)
|+||+|+|+.-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999963
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=120.55 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc-------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D-------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
....+++|||+++ ++++||++|+++|++||+|. ++++.+ ++||||||+|.+.++|++|++.| +.++|+.
T Consensus 4 ~~~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~ 79 (114)
T 2dnl_A 4 GSSGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKL 79 (114)
T ss_dssp SSSCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEE
T ss_pred CCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcE
Confidence 3466799999998 58899999999999999999 888774 56999999999999999999997 4588888
Q ss_pred EEEEeccc
Q 005082 442 VLVKPYKE 449 (715)
Q Consensus 442 I~Vk~A~e 449 (715)
+.|.....
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88876543
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-13 Score=124.28 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK 450 (715)
|+|||+++ ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|.|+.|.|.++..+
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 79999998 578999999999999999999999876 67899999999999999999999999999999999998765
Q ss_pred C
Q 005082 451 G 451 (715)
Q Consensus 451 ~ 451 (715)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=2e-13 Score=134.69 Aligned_cols=87 Identities=14% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEE
Q 005082 363 NGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 363 ~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I 442 (715)
|+..+.....+++|||++++.+++++++|+++|++||+|.+|+|++++ ||||||+|.+.++|++|++.||+..|+|+.|
T Consensus 24 ~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 24 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred cCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 443445667889999999966599999999999999999999999875 8999999999999999999999999999999
Q ss_pred EEEecccC
Q 005082 443 LVKPYKEK 450 (715)
Q Consensus 443 ~Vk~A~eK 450 (715)
.|.++..+
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99998765
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.42 E-value=1.3e-13 Score=123.55 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeE-----EEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-----VLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~-----I~V 444 (715)
.....+|||++| ++++++++|+++|++||+|++|+|+.+ |||||+|.+.++|++|++.||++.|+|++ |+|
T Consensus 13 ~r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 13 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp ----CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 356789999998 588999999999999999999999885 99999999999999999999999999998 777
Q ss_pred EecccC
Q 005082 445 KPYKEK 450 (715)
Q Consensus 445 k~A~eK 450 (715)
....++
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 765543
No 164
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7e-13 Score=118.11 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCC----------CHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc
Q 005082 369 VNPASRQIYLTFPADSTF----------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~----------TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~ 438 (715)
....+++|+|.++..... ++++|+++|++||+|++|.|+...+||||||+|.+.++|++|++.||++.|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346789999999843321 3689999999999999997743368999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 005082 439 DARVLVKPYKEKGK 452 (715)
Q Consensus 439 GR~I~Vk~A~eK~k 452 (715)
||.|.|.++.++.+
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987654
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=1.4e-13 Score=127.46 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeE--EEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--DVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVe--dVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
....++|||++| +|++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. +++.|+||.|.|
T Consensus 39 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 345689999988 7899999999999999 677 9999986 7899999999999999999997 779999999999
Q ss_pred Eeccc
Q 005082 445 KPYKE 449 (715)
Q Consensus 445 k~A~e 449 (715)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 166
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=4.8e-13 Score=119.52 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCC----CCCHHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 371 PASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 371 ~~sRtIYVg~~~~~----~~TEedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
..+++|||.++.+. +.++++|++.|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.||+..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 56789999988531 3478999999999999999999975 57999999999999999999999999999999
Q ss_pred EEEEeccc
Q 005082 442 VLVKPYKE 449 (715)
Q Consensus 442 I~Vk~A~e 449 (715)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.1e-13 Score=121.93 Aligned_cols=80 Identities=10% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....++|||+++ ++.+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|++|.|
T Consensus 83 ~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3456789999988 568999999999999999999999876 67999999999999999999999999999999999
Q ss_pred Eeccc
Q 005082 445 KPYKE 449 (715)
Q Consensus 445 k~A~e 449 (715)
.++++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=2.6e-13 Score=124.91 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=71.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|.+|++ +++..|+|++|.|+++
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 4579999998 568999999999999999999999875 679999999999999999998 6999999999999999
Q ss_pred ccC
Q 005082 448 KEK 450 (715)
Q Consensus 448 ~eK 450 (715)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=2.8e-13 Score=126.14 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
....++|||+++ ++++|+++|+++|++||+|..| ....++||||||+|.+.++|.+|++.||++.|+|+.|.|.++.+
T Consensus 96 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 456789999998 5689999999999999999888 32338999999999999999999999999999999999999987
Q ss_pred C
Q 005082 450 K 450 (715)
Q Consensus 450 K 450 (715)
|
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 6
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=6.8e-13 Score=125.16 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
....+++|||++| ++++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3467899999998 578999999999999999999999986 5789999999999999999988 999999999999
Q ss_pred EecccCC
Q 005082 445 KPYKEKG 451 (715)
Q Consensus 445 k~A~eK~ 451 (715)
.++..+.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987654
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=8.8e-13 Score=123.27 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=70.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCce-EEEEEcCHHHHHHHHHhCCCceEcC--eEEEEEeccc
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKE 449 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGF-GFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~Vk~A~e 449 (715)
--.|||+++ .+.+||++|+++|++||+|.+|+|+. +.||| |||+|.+.++|++|++.||+..|+| ++|+|.+++.
T Consensus 28 VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred eEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 357899998 58999999999999999999999876 46788 9999999999999999999999999 9999999987
Q ss_pred CCC
Q 005082 450 KGK 452 (715)
Q Consensus 450 K~k 452 (715)
+.-
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 643
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=6.6e-13 Score=127.11 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45689999998 567999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+..+..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987643
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=8e-13 Score=124.89 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56799999998 468999999999999999999999976 5699999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988764
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=121.13 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCce-EEEEEcCHHHHHHHHHhCCCceEcC--eEEEEEecccCC
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKEKG 451 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGF-GFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~Vk~A~eK~ 451 (715)
.|||+++ .|.+|+++|+++|++||+|++|+|+. .+|| |||+|.+.++|+.|++.||+..|+| +.|+|.+++++.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4689987 58999999999999999999999976 3597 9999999999999999999999998 699999998775
Q ss_pred C
Q 005082 452 K 452 (715)
Q Consensus 452 k 452 (715)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 175
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=114.84 Aligned_cols=84 Identities=11% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCCCcceEEEcCCCC------CCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 366 AGIVNPASRQIYLTFPAD------STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~------~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
..+.+...++|-|.+... .+++|++|+++|++||+|++|+|+. ++||||||+|.+.++|+.|++.++ .+.|
T Consensus 3 ~~~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g 79 (100)
T 2d9o_A 3 SGSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEV--GLVD 79 (100)
T ss_dssp CCCCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCC--BCSS
T ss_pred CCcCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcC--CCCC
Confidence 445677788999987653 3589999999999999999999984 689999999999999999999854 4789
Q ss_pred eEEEEEecccCCC
Q 005082 440 ARVLVKPYKEKGK 452 (715)
Q Consensus 440 R~I~Vk~A~eK~k 452 (715)
+.|+|+++.++..
T Consensus 80 ~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 NPLKISWLEGQPQ 92 (100)
T ss_dssp SBCEEECSSCCCC
T ss_pred CeEEEEEccCCCC
Confidence 9999999887654
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.5e-12 Score=130.88 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEeecc-CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLr----e~FSqFGeVedVrIp~D-rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
....+++|||+++ ++++|+++|+ ++|++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 5 ~~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3567899999998 5889999977 89999999999999875 8899999999999999999999999999999999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|.++..+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99986554
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=1.2e-12 Score=128.02 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=69.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
..++|||+++ ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.|+||.|.|++..
T Consensus 108 ~~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 4689999998 578999999999999999999999986 67999999999999999999885 569999999999876
Q ss_pred c
Q 005082 449 E 449 (715)
Q Consensus 449 e 449 (715)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=7.8e-13 Score=126.61 Aligned_cols=81 Identities=17% Similarity=0.406 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
..+++|||+++ ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 26 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34689999998 567999999999999999999999876 5899999999999999999999999999999999998
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+..+..
T Consensus 105 ~~~~~~ 110 (216)
T 2qfj_A 105 PSNIGQ 110 (216)
T ss_dssp CSCCGG
T ss_pred CCCccc
Confidence 876643
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=5.7e-13 Score=122.43 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcC--eEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVL 443 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G--R~I~ 443 (715)
....++|||++++ +.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|.+|++.||+..|+| ++|+
T Consensus 86 ~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNLP-RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESCC-TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCCC-CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 4567899999984 68999999999999999999999885 568999999999999999999999999988 9999
Q ss_pred EEec
Q 005082 444 VKPY 447 (715)
Q Consensus 444 Vk~A 447 (715)
|+++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.35 E-value=5.6e-13 Score=127.04 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=73.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecccCC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~eK~ 451 (715)
.+++|||++++.+++++++|+++|++||+|.+|+|+.++ ||||||+|.+.++|++|++.|++..|+|+.|.|.++..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 468999999966599999999999999999999999875 8999999999999999999999999999999999987654
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=1.2e-12 Score=120.39 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.+++|||+++ ++++||++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. .+.|+|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 5789999998 578999999999999999999999886 7899999999999999999996 68999999999987
Q ss_pred ccC
Q 005082 448 KEK 450 (715)
Q Consensus 448 ~eK 450 (715)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 653
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=1.2e-12 Score=120.70 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc------CCCceEEEEEcCHHHHHHHHHhCCCceEc---CeEE
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARV 442 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~---GR~I 442 (715)
.+++|||+++ ++++||++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 5789999998 578999999999999999999999986 57899999999999999999999998776 7888
Q ss_pred EEEecccCCC
Q 005082 443 LVKPYKEKGK 452 (715)
Q Consensus 443 ~Vk~A~eK~k 452 (715)
.|.++..+..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888765543
No 183
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=1.7e-12 Score=141.92 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
...++|||++| ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999998 678999999999999999999999976 6799999999999999999999999999999999999
Q ss_pred cccCCC
Q 005082 447 YKEKGK 452 (715)
Q Consensus 447 A~eK~k 452 (715)
+..+..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=1.1e-12 Score=131.85 Aligned_cols=83 Identities=8% Similarity=-0.028 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEE
Q 005082 370 NPASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~-~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk 445 (715)
....++|||++++ ++ +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||++.|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLP-PGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCC-TTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCC-cccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 4567899999985 56 599999999999999999999886 679999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 005082 446 PYKEKGKV 453 (715)
Q Consensus 446 ~A~eK~k~ 453 (715)
++.++...
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99887653
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=9.1e-13 Score=132.63 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=70.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhC-CCceEc---CeEEEE
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKG-NPHFVC---DARVLV 444 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~---GR~I~V 444 (715)
..++|||+++ ++.+|+++|+++|++||+|++|+|+.| +++|||||+|.+.++|.+|++.| ++..+. +|+|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999998 578999999999999999999999986 67999999999999999999999 556665 999999
Q ss_pred EecccC
Q 005082 445 KPYKEK 450 (715)
Q Consensus 445 k~A~eK 450 (715)
.++..+
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=8.4e-13 Score=120.64 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeE--EEE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR--VLV 444 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~--I~V 444 (715)
...++|||+++ ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45689999998 468999999999999999999999876 46899999999999999999999999999975 888
Q ss_pred Eec
Q 005082 445 KPY 447 (715)
Q Consensus 445 k~A 447 (715)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=2.3e-12 Score=118.83 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEc---CeEEE
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARVL 443 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~---GR~I~ 443 (715)
....++|||+++ ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.||+..+. |++|.
T Consensus 92 ~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 346789999998 568999999999999999999999986 67999999999999999999999998776 49999
Q ss_pred EEec
Q 005082 444 VKPY 447 (715)
Q Consensus 444 Vk~A 447 (715)
|+++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.31 E-value=5.4e-12 Score=126.81 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEecc
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~A~ 448 (715)
...+++|||+++ ++.+++++|+++|++||.|++|+|+.++ +|||||+|.+.++|.+|++.||+..|+ |+.|+|.+++
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 456799999998 5689999999999999999999999754 699999999999999999999999999 9999999975
No 189
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.8e-12 Score=112.07 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=67.5
Q ss_pred CCcce-EEEcCCCCCCCCHHH----HHHhhccC-CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 371 PASRQ-IYLTFPADSTFREED----VSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRt-IYVg~~~~~~~TEed----Lre~FSqF-GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
+.+.| |||+++ ++++++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..|.||+|+|
T Consensus 6 ~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34555 999998 67899888 55899999 599999 3499999999999999999999999999999999
Q ss_pred EecccCCCCc
Q 005082 445 KPYKEKGKVP 454 (715)
Q Consensus 445 k~A~eK~k~~ 454 (715)
..++.+.+..
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9998887643
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.27 E-value=8.2e-12 Score=117.92 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqF----G-------eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
+.+|+|||+++ ++++||++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||++.|+|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 46799999998 5789999999999999 6 788888766 8999999999999999999 789999999
Q ss_pred eEEEEEecccCCC
Q 005082 440 ARVLVKPYKEKGK 452 (715)
Q Consensus 440 R~I~Vk~A~eK~k 452 (715)
+.|.|.++..+..
T Consensus 78 ~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 78 QSLKIRRPHDYQP 90 (198)
T ss_dssp EEEEEECCCCCCC
T ss_pred ceEEEeCCCCCCC
Confidence 9999998876543
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=9.5e-12 Score=114.97 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqF----G-------eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
+.+++|||+++ ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||++.|+|
T Consensus 2 r~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 45799999998 5789999999999999 7 889998877 7999999999999999999 789999999
Q ss_pred eEEEEEecccCC
Q 005082 440 ARVLVKPYKEKG 451 (715)
Q Consensus 440 R~I~Vk~A~eK~ 451 (715)
+.|.|.++....
T Consensus 78 ~~i~v~~~~~~~ 89 (172)
T 2g4b_A 78 QSLKIRRPHDYQ 89 (172)
T ss_dssp EECEEECCSSCC
T ss_pred ceeeecCCcccC
Confidence 999999876543
No 192
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.4e-12 Score=114.58 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHHHhh-ccCCCeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 390 DVSNYF-SIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 390 dLre~F-SqFGeVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
+|++.| ++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..++||.|.|.++
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 333444 99999999999986 57999999999999999999999999999999999875
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=1.4e-11 Score=124.33 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeecc-----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 370 NPASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~-~TEedLre~FSqFGeVedVrIp~D-----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
....++|||++++ +. +|+++|+++|++||.|++|+|+.+ ++||||||+|.+.++|.+|+ .||++.|+|+.|.
T Consensus 207 ~~~~~~l~v~nlp-~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNLS-TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEEC-TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECCC-cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4567899999984 66 999999999999999999999875 46999999999999999999 9999999999999
Q ss_pred EEecccC
Q 005082 444 VKPYKEK 450 (715)
Q Consensus 444 Vk~A~eK 450 (715)
|.++.+|
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999876
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.3e-11 Score=124.11 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
....+++|||+++ ++++|+++|+++|++||+|.+|+|++ +||||||+|.+.++|++|+..||++.|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 18 TYTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SSCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3466789999998 57899999999999999999999987 79999999999999999999999999999999999987
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=1.8e-11 Score=109.16 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCC-CC--------CHHHHHHhhccCCCeEEEEeecc------CCCceEEEEEcCHHHHHHHHHhCCCc
Q 005082 371 PASRQIYLTFPADS-TF--------REEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPH 435 (715)
Q Consensus 371 ~~sRtIYVg~~~~~-~~--------TEedLre~FSqFGeVedVrIp~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~ 435 (715)
..+|.|.|.++.+. .+ .+++|++.|++||+|++|+|+++ +++|||||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788888877432 22 34799999999999999999986 46899999999999999999999999
Q ss_pred eEcCeEEEEEeccc
Q 005082 436 FVCDARVLVKPYKE 449 (715)
Q Consensus 436 ~L~GR~I~Vk~A~e 449 (715)
.++||.|.|..+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.22 E-value=7.4e-12 Score=116.54 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeec---cCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEE
Q 005082 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~---DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~V 444 (715)
.....+++|||+++ ++++|+++|+++|++||.|..+.|.. .++||||||+|.+.++|++|++ ||++.|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45677899999998 57899999999999999887732221 2799999999999999999995 8999999999999
Q ss_pred EecccCCC
Q 005082 445 KPYKEKGK 452 (715)
Q Consensus 445 k~A~eK~k 452 (715)
.++..+..
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99987643
No 197
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.21 E-value=2.5e-11 Score=110.45 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=68.3
Q ss_pred CCcceEEEcCCCCCC---------CCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeE
Q 005082 371 PASRQIYLTFPADST---------FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~---------~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~ 441 (715)
..+|.|+|.++.+-. -.++||++.|++||+|++|.|+++..||||||+|.+.++|++|++.||+..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356778888774432 23578999999999999999998878999999999999999999999999999999
Q ss_pred EEEEeccc
Q 005082 442 VLVKPYKE 449 (715)
Q Consensus 442 I~Vk~A~e 449 (715)
|.|.++.+
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99998853
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=2.2e-11 Score=111.30 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCC----CCCHHHHHHhhccCCCeEEEEeecc--------CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 372 ASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQ--------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 372 ~sRtIYVg~~~~~----~~TEedLre~FSqFGeVedVrIp~D--------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
.++.|+|.++.+. +-.++||++.|++||+|++|+|+.+ ++|||+||+|.+.++|.+|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4788899887432 2247999999999999999999986 246999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 005082 440 ARVLVKPYKE 449 (715)
Q Consensus 440 R~I~Vk~A~e 449 (715)
|.|.|..+.+
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.19 E-value=3.8e-11 Score=120.79 Aligned_cols=80 Identities=9% Similarity=0.173 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc----CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D----rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~ 446 (715)
+..++|||+++ ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45689999998 578999999999999999999999876 5789999999999999999999999999999999999
Q ss_pred cccCC
Q 005082 447 YKEKG 451 (715)
Q Consensus 447 A~eK~ 451 (715)
+.++.
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 97654
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.18 E-value=3.6e-11 Score=118.56 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEec
Q 005082 370 NPASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FSqFG-eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~A 447 (715)
...+++|||+++ ++.+++++|+++|++|| +|.+|+|+. +.||||||+|.+.++|.+|++.||+..|+ |+.|+|.++
T Consensus 148 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 345799999988 56899999999999999 999999954 26899999999999999999999999999 999999998
Q ss_pred ccC
Q 005082 448 KEK 450 (715)
Q Consensus 448 ~eK 450 (715)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 754
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.18 E-value=2e-11 Score=116.30 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc-CeEEEEEecc
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFG-eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~-GR~I~Vk~A~ 448 (715)
+.+++|||+++ ++.+++++|+++|++|| +|.+|+|+.+ .||||||+|.+.++|.+|++.||+..|+ |+.|.|.+++
T Consensus 118 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 45899999988 56899999999999999 9999999653 5899999999999999999999999999 9999999987
Q ss_pred cC
Q 005082 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 202
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.16 E-value=4e-11 Score=121.02 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=70.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeecc---CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFG-eVedVrIp~D---rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ ++.+++++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.|+++.|+|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 5789999988 57899999999999999 9999999886 58999999999999999999999999999999999998
Q ss_pred ccCCC
Q 005082 448 KEKGK 452 (715)
Q Consensus 448 ~eK~k 452 (715)
.++.+
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=8.2e-11 Score=125.72 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=68.0
Q ss_pred CCCCCcceEEEcCC-CCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEc---Ce--E
Q 005082 368 IVNPASRQIYLTFP-ADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC---DA--R 441 (715)
Q Consensus 368 s~~~~sRtIYVg~~-~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~---GR--~ 441 (715)
.....+++|||+|+ ..+.+||++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.||+..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34567889999986 478999999999999999999999987 8999999999999999999999999883 55 5
Q ss_pred EEEEec
Q 005082 442 VLVKPY 447 (715)
Q Consensus 442 I~Vk~A 447 (715)
+.|..+
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 666655
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.13 E-value=3.6e-11 Score=118.31 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCe--EEEEeecc--CCCceEEEEEcCHHHHHHHHHhCCCceEcCe----EE
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV--QDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA----RV 442 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeV--edVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR----~I 442 (715)
..+++|||+++ ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||++.|.|+ ++
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 44679999988 5789999999999999999 99999886 5679999999999999999999999999998 56
Q ss_pred EEEec
Q 005082 443 LVKPY 447 (715)
Q Consensus 443 ~Vk~A 447 (715)
.||++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.9e-08 Score=87.91 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCcceEEEcCCCC---CCCCH----HHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 371 PASRQIYLTFPAD---STFRE----EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 371 ~~sRtIYVg~~~~---~~~TE----edLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
+---||+|.-... .+.-. .+|.+.|++||+|..|||+.|+ +||||.+.++|.+|++ ||+..|+||.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 4456787764321 22223 6789999999999999999854 9999999999999998 899999999999
Q ss_pred EEecccC
Q 005082 444 VKPYKEK 450 (715)
Q Consensus 444 Vk~A~eK 450 (715)
|+.+++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9987654
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=5.5e-08 Score=95.40 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCHHHHHHhhccCCCeEEEEeecc--------CCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEeccc
Q 005082 386 FREEDVSNYFSIYGPVQDVRIPYQ--------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 386 ~TEedLre~FSqFGeVedVrIp~D--------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~e 449 (715)
-.+++|++.|++||+|.+|.|+.+ ++|||+||+|.+.++|.+|++.||+..++||.|.|..+.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999853 6889999999999999999999999999999999998753
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.7e-07 Score=82.35 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCCCCcceEEEcCCCCC-----CCCH---HHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 368 IVNPASRQIYLTFPADS-----TFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 368 s~~~~sRtIYVg~~~~~-----~~TE---edLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
...+---||+|.-+.+. .+.+ .+|.+.|++||+|..|||+.|+ +||||.+.++|.+|++ ||+..|+|
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 34466678999854321 1231 5688999999999999999965 9999999999999999 89999999
Q ss_pred eEEEEEec
Q 005082 440 ARVLVKPY 447 (715)
Q Consensus 440 R~I~Vk~A 447 (715)
|.|+|+.-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=8e-07 Score=82.28 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=64.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcC-HHHHHHHHHhCC--CceEcCeEEEEEec
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVY-PETVKIILAKGN--PHFVCDARVLVKPY 447 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~-~E~Ae~ALe~LN--g~~L~GR~I~Vk~A 447 (715)
+..--|||+++....+++++|+++|++||+|..|.++.| +-.|||.|.+ .++|..|+++|| +..|+|..+.+...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 455678999884433999999999999999999999985 3379999999 899999999984 78899998888765
Q ss_pred c
Q 005082 448 K 448 (715)
Q Consensus 448 ~ 448 (715)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00079 Score=61.02 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhcc-----CCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEE
Q 005082 369 VNPASRQIYLTFPADSTFREEDVSNYFSI-----YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FSq-----FGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~ 443 (715)
.....++|.|.++++ .+.++.|+-||+. =|+|++|+... +=|+|+|.+++.|+++|++ ..|.|+|.+|.
T Consensus 4 ~~~~~~~I~V~~lPp-~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPP-AVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp SCCCCCEEEEESCCT-TSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccCccEEEEECCCC-CCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 356778999999876 7899999999988 37999998753 6799999999999999987 79999999999
Q ss_pred EEecccCC
Q 005082 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~A~eK~ 451 (715)
|.++.++.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 99987764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0062 Score=56.02 Aligned_cols=72 Identities=7% Similarity=-0.047 Sum_probs=62.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccC-----CCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIY-----GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqF-----GeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
.|+|=+=++ +.++++..|+.+..++ |.|++|.+..| .+=|+|+|.+...|-+|.-.+++..|+||+|+|.-.
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pD--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSD--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecC--CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 466666555 5589999999999999 99999999884 566999999999999999888999999999999843
No 211
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.27 E-value=0.0026 Score=56.69 Aligned_cols=21 Identities=29% Similarity=1.124 Sum_probs=10.5
Q ss_pred ccccccccccCCCCCCcccCC
Q 005082 233 PCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 233 pC~YFarG~CK~GssCrf~Hg 253 (715)
.|.||.+|.|++|.+|+|.|.
T Consensus 15 lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 15 LCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp BCTTTTTTCCSCSTTCSSBSS
T ss_pred cCcccccCcCCCCCCCCCCCC
Confidence 454444555555555555553
No 212
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.0026 Score=53.79 Aligned_cols=23 Identities=39% Similarity=1.032 Sum_probs=21.8
Q ss_pred CcccccccccccCCCCCCcccCC
Q 005082 231 WRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~GssCrf~Hg 253 (715)
.+.|.+|.+|.|+.|+.|+|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 48998889999999999999999
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.018 Score=53.38 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=51.7
Q ss_pred CHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcC-eEEEEEeccc
Q 005082 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-ARVLVKPYKE 449 (715)
Q Consensus 387 TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G-R~I~Vk~A~e 449 (715)
.-..|-++|++||+|++...+. ...+-.|+|.++.+|++||.+ |+..|+| -.|-|++...
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCC
T ss_pred HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCC
Confidence 3577779999999999998854 678999999999999999999 9999985 7788888753
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.49 E-value=0.012 Score=55.45 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=53.6
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEE-EEeecc-----------------CCCceEEEEEcCHHHHHHHHHhCCCceE
Q 005082 376 IYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ-----------------QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 376 IYVg~~~~~~~TEedLre~FSqFGeVed-VrIp~D-----------------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L 437 (715)
|+-||+.+ ....|-++|++||.|.+ +.+..+ ....+-.|+|++..+|.+||.. |+..|
T Consensus 11 tVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 11 LVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 44466532 46778899999999977 322210 1356779999999999999999 99999
Q ss_pred cCeEEEEEecc
Q 005082 438 CDARVLVKPYK 448 (715)
Q Consensus 438 ~GR~I~Vk~A~ 448 (715)
+|..|-|+++.
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99999999985
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.47 E-value=0.0029 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.779 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCCCCCcccCC
Q 005082 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
....+|.||.+|.|++|.+|+|.|.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccc
Confidence 4567999999999999999999997
No 216
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.27 E-value=0.011 Score=48.84 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=39.8
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 005082 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L 61 (715)
..+|.+|++++|++|.||.|+|| +.+..|++.|=-.||+ |++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLL--E~d~~ell~ll~~~e~-L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLL--ELSPAQLLLLLASEDS-LRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHT--TSCHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhc--cCCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 45899999999999999999988 4667788888766654 566666665544
No 217
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.24 E-value=0.0052 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=22.2
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
--.+|.||.+|.|++|.+|+|.|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 456899999999999999999997
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.20 E-value=0.027 Score=51.06 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=62.0
Q ss_pred CcceEEEcCCCCCCCCH----HHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEec
Q 005082 372 ASRQIYLTFPADSTFRE----EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TE----edLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A 447 (715)
-.++|+|+++...-++. +.++++|.+|+++......+ +-.=-.|.|.++++|.+|-..|++..+.|++++|..+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 34689999985433332 56789999999999987776 3334689999999999999999999999999999988
Q ss_pred c
Q 005082 448 K 448 (715)
Q Consensus 448 ~ 448 (715)
+
T Consensus 82 q 82 (104)
T 1wey_A 82 Q 82 (104)
T ss_dssp C
T ss_pred C
Confidence 7
No 219
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.01 E-value=0.014 Score=48.71 Aligned_cols=27 Identities=33% Similarity=0.804 Sum_probs=23.3
Q ss_pred CCCCCcccccc-cccccCCCCCCcccCC
Q 005082 227 SGLGWRPCLYF-ARGYCKNGSSCRFVHG 253 (715)
Q Consensus 227 ~~~g~kpC~YF-arG~CK~GssCrf~Hg 253 (715)
..+.-++|.|| .+|.|+.|.+|+|.|+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCC
Confidence 34567899888 4999999999999998
No 220
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.52 E-value=0.016 Score=50.80 Aligned_cols=51 Identities=25% Similarity=0.483 Sum_probs=39.4
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 005082 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L 61 (715)
.-+|.+|++++||.|.||.|+|| +.+..|++.|=-.|| +|++.|..|-.-|
T Consensus 29 E~LyplV~~~~p~~AgKITGMLL--Emd~~ElL~Lle~~e-~L~~kV~EA~~vL 79 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLL--EMDNGEILNLLDTPG-LLDAKVQEALEVL 79 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCS--CTHHHHHHTTCCTHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 35799999999999999999988 466667888755554 5677777766554
No 221
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.39 E-value=0.011 Score=49.48 Aligned_cols=22 Identities=41% Similarity=1.029 Sum_probs=20.2
Q ss_pred cccccccccccCCCCC-CcccCC
Q 005082 232 RPCLYFARGYCKNGSS-CRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~Gss-Crf~Hg 253 (715)
.+|.+|.+|.|++|.+ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4799999999999995 999997
No 222
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=94.37 E-value=0.04 Score=48.56 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=40.5
Q ss_pred HHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 005082 9 IVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (715)
Q Consensus 9 vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L~~ 63 (715)
.+|.+|++++|+.|.||.|.||= .+..|++.|==.| ..|++-|..|-.-|..
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~~-e~L~~kV~EA~~vL~~ 78 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 78 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 58999999999999999999984 5566788776555 4567777777666643
No 223
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.28 E-value=0.013 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.898 Sum_probs=21.4
Q ss_pred Ccccccc-cccccCCCCCCcccCC
Q 005082 231 WRPCLYF-ARGYCKNGSSCRFVHG 253 (715)
Q Consensus 231 ~kpC~YF-arG~CK~GssCrf~Hg 253 (715)
..+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 6799998 6999999999999997
No 224
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=94.21 E-value=0.019 Score=50.33 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=39.8
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 005082 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L 61 (715)
.-+|.+|++++||+|.||.|+||= .+..|++.|=-.||. |++-|..|-.-|
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLE--md~~Ell~Lles~e~-L~~kv~EA~~vL 78 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLE--MDQTEVLHLLESPDA-LKAKVAEAMEVL 78 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHH--HCHHHHHHHTTCSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccchhhhhhhc--CCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 458999999999999999999985 557778888766665 566666665544
No 225
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=93.72 E-value=0.012 Score=49.25 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=0.0
Q ss_pred CCcccc-cccccccCCCCCCcccCC
Q 005082 230 GWRPCL-YFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~-YFarG~CK~GssCrf~Hg 253 (715)
.-++|. |+.+|+|++|..|+|.|+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp -------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCC
Confidence 347895 667999999999999998
No 226
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=93.65 E-value=0.037 Score=49.18 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHhhhc--cCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 005082 8 RIVFSRIQN--LDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (715)
Q Consensus 8 ~vvf~riq~--ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L~~ 63 (715)
.-+|.+|++ ++||.|.||.|+|| +.+..|++.|=-.|| +|++-|..|-.-|.-
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLes~e-~L~~kV~EA~~vL~~ 80 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLESDE-LFEQHYKEASAAYES 80 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHTCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 358999999 99999999999988 577788888866555 567777777666643
No 227
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.30 E-value=0.029 Score=62.35 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=40.8
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHh
Q 005082 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK 431 (715)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~ 431 (715)
.|.|||.++ ..+++.+|.+||++||+|.++.+-.+ ..-|+.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~~~--~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHCP--EKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEEC--CC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEcC--CCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 467888754 56899999999999999999977552 445999999999999988765
No 228
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.04 E-value=0.096 Score=47.27 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=45.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LN 433 (715)
+-+||+|+.+| ...||.++|+.|| -..|+.+-| .-|||.|.+++.|..|+..++
T Consensus 7 HV~~l~FP~ew--Kt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEW--KTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTC--CHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhh--hhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 46788999887 5689999999999 566777764 569999999999999998654
No 229
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.98 E-value=0.035 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.832 Sum_probs=20.7
Q ss_pred CcccccccccccCCCC-CCcccCC
Q 005082 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~Gs-sCrf~Hg 253 (715)
.-.|++|.+|.|++|. .|+|.|-
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 3479999999999995 9999997
No 230
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=92.94 E-value=0.027 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.762 Sum_probs=21.0
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
....|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4567999999999999 9999997
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.63 E-value=0.045 Score=50.29 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=26.9
Q ss_pred EEEeecc--CCCceEEEEEcCHHHHHHHHHhCCC
Q 005082 403 DVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNP 434 (715)
Q Consensus 403 dVrIp~D--rsRGFGFVTF~~~E~Ae~ALe~LNg 434 (715)
.+.|+.+ +++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4566665 7899999999999999999988664
No 232
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.50 E-value=0.28 Score=44.23 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=45.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~L 432 (715)
...+-+||+|+.+| ...||.++|+.|| -..|+.+.| .-|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l~FP~ew--Kt~DI~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHVTFPKEW--KTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEEECCTTC--CHHHHHHHHTTTC-SCCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhh--hhHHHHHHhhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 44567888999877 5689999999999 456666654 56999999999999999864
No 233
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=91.72 E-value=0.074 Score=50.74 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=40.7
Q ss_pred HHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 005082 10 VFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (715)
Q Consensus 10 vf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L~~ 63 (715)
+|-+|++++||+|.||.|+||= .+..|++.|=-.|| +|++.|..|-.-|.-
T Consensus 74 LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~e-~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 74 LFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPE-SLRSKVDEAVAVLQA 124 (144)
T ss_dssp SHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 6899999999999999999984 55668888876665 567777777776653
No 234
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.63 E-value=0.042 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.740 Sum_probs=21.3
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
....|.||.+|.|.+| +|+|+|.
T Consensus 55 ~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp EEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ccccchhhccCCCCCC-CcCccCC
Confidence 5668999999999999 9999997
No 235
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.42 E-value=0.046 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=21.0
Q ss_pred CcccccccccccCCCC-CCcccCC
Q 005082 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~Gs-sCrf~Hg 253 (715)
.-.|++|.||.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 4479999999999997 9999997
No 236
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.22 E-value=0.026 Score=50.41 Aligned_cols=23 Identities=43% Similarity=0.979 Sum_probs=21.0
Q ss_pred CcccccccccccCCCC-CCcccCC
Q 005082 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~Gs-sCrf~Hg 253 (715)
...|+||.+|.|++|. .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 3589999999999998 7999997
No 237
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.87 E-value=0.075 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.873 Sum_probs=20.5
Q ss_pred Ccccccccc-cccCCCCCCcccCCC
Q 005082 231 WRPCLYFAR-GYCKNGSSCRFVHGG 254 (715)
Q Consensus 231 ~kpC~YFar-G~CK~GssCrf~Hg~ 254 (715)
..+|.||.+ |.|. |..|+|.|..
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~ 61 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHID 61 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCC
T ss_pred CCCCcccCCCCccC-CCCeeccCCC
Confidence 457999999 9999 8999999983
No 238
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=89.55 E-value=0.092 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=21.1
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
..-.|.+|.||.|.++ +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4678999999999999 9999997
No 239
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=89.50 E-value=0.077 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.915 Sum_probs=20.9
Q ss_pred CCcccccccc-cccCCCCCCcccCC
Q 005082 230 GWRPCLYFAR-GYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFar-G~CK~GssCrf~Hg 253 (715)
...+|.||.+ |.|.+ ..|+|.|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCC
Confidence 3568999999 99999 99999997
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.95 E-value=0.15 Score=46.58 Aligned_cols=40 Identities=10% Similarity=-0.113 Sum_probs=36.5
Q ss_pred CCCceEEEEEcCHHHHHHHHHhC-CCceEcCeEEEEEecccC
Q 005082 410 QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 410 rsRGFGFVTF~~~E~Ae~ALe~L-Ng~~L~GR~I~Vk~A~eK 450 (715)
+-+|+++|+|.+.++|++|++.| |+..|+| .+.|.++..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 67899999999999999999999 9999999 9999977643
No 241
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=84.75 E-value=2.6 Score=37.12 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=53.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc------CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
.+|.|++++ -++||+++.+.++.+.++...+.+.+ ..-.-|+|.|.+.|++..-.+..+++.+.+
T Consensus 2 ~KvVIRrLP-P~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLP-PTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEEC-TTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCC-CCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478888885 57999999999999998887776553 223569999999999999999988887744
No 242
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=83.90 E-value=0.25 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=21.0
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005082 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
-.-.|.+|.||.|.++ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4678999999999999 9999997
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=77.86 E-value=0.86 Score=36.29 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.5
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005082 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrf~Hg 253 (715)
..-.+| .|-+-|+|++|-.|.+.|.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 467789 8888999999999999997
No 244
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.08 E-value=12 Score=41.86 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=46.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCC
Q 005082 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP 434 (715)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg 434 (715)
...+.+||+++..| ...+|.+.|+.||. .+|+.+. ...+||.|.+.+.|..++..++.
T Consensus 438 ~R~~vl~v~f~~~~--~~~~i~~~fs~fg~-v~V~wid---dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVTFPKEW--KTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEECCTTC--CHHHHHHHGGGGCC-CEEEECS---SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEeCCCCC--CHHHHHHHHHhcCC-EEEEEEc---CCeEEEEECCHHHHHHHHHHHHh
Confidence 45678889988766 56999999999995 4666654 46799999999999999988653
No 245
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=62.39 E-value=14 Score=32.99 Aligned_cols=67 Identities=7% Similarity=0.076 Sum_probs=48.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeecc------CCCceEEEEEcCHHHHHHHHHhCCCceEcC
Q 005082 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FSqFGeVedVrIp~D------rsRGFGFVTF~~~E~Ae~ALe~LNg~~L~G 439 (715)
-+-+|.|+.+++ .+||+++.+.++.+=++...+.+.. ..-.-|+|.|.+.|++..-.+..+++.+-+
T Consensus 8 ~~~KvVIRrLPP-~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPP-GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCS-CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCC-CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356899998854 7999998888777644433332221 122359999999999999999988887744
No 246
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=38.21 E-value=7.3 Score=39.54 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCCCCCcccCC
Q 005082 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 228 ~~g~kpC~YFarG~CK~GssCrf~Hg 253 (715)
+..+.||-|= .-|..|+.|+|+|-
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~ 212 (223)
T 3v33_A 189 EHRKQPCPYG--RKCTYGIKCRFFHP 212 (223)
T ss_dssp --------------------------
T ss_pred ccCCCCCCCC--cccccCCcceecCC
Confidence 4468899995 46999999999995
No 247
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.84 E-value=14 Score=34.92 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=19.3
Q ss_pred HHHHHHhhccCCCeEEEEeeccCCCceEEEEEc
Q 005082 388 EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFV 420 (715)
Q Consensus 388 EedLre~FSqFGeVedVrIp~DrsRGFGFVTF~ 420 (715)
++|+.++|...|.|..... .||||||+-.
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~----~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV----RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET----TTTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC----CCCeeEEeeC
Confidence 3566777888888877655 7899999965
No 248
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.01 E-value=1.1e+02 Score=24.75 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=42.1
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCC-----CeEEEEeeccCCCceEEEEEcCHHHHHHHHHhCCCceEcCeEEEEEecc
Q 005082 375 QIYLTFPADSTFREEDVSNYFSIYG-----PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FSqFG-----eVedVrIp~DrsRGFGFVTF~~~E~Ae~ALe~LNg~~L~GR~I~Vk~A~ 448 (715)
++||..=....++..+|-.++..-+ .|-.|+|. -.|.||+-... .++.+++.|++..++|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3455422233566677777776544 45566663 46999987655 4777888889999999999988764
No 249
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=24.38 E-value=14 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.1
Q ss_pred chhhhhhhhhcccC
Q 005082 21 NASKIMGLLLLQDH 34 (715)
Q Consensus 21 nasKI~G~lLlqd~ 34 (715)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 57899999999986
No 250
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=22.20 E-value=17 Score=24.77 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.5
Q ss_pred chhhhhhhhhcccC
Q 005082 21 NASKIMGLLLLQDH 34 (715)
Q Consensus 21 nasKI~G~lLlqd~ 34 (715)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67899999999986
No 251
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=22.19 E-value=66 Score=22.78 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 005082 499 DMLWRRKMEEQAD 511 (715)
Q Consensus 499 eml~RrklEEq~e 511 (715)
..++++|+|||++
T Consensus 8 m~lLKKKIEEQr~ 20 (29)
T 3lcn_C 8 MKLLKKKIEEQRE 20 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999974
No 252
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.27 E-value=1.5e+02 Score=24.74 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.8
Q ss_pred hhhHHHHHHhhhccCCCchh--hhhhhhhcccCChhHHHH-----HhcCch----HHHHHHHHHHHHH
Q 005082 4 YEATRIVFSRIQNLDPENAS--KIMGLLLLQDHGEKEMIR-----LAFGPE----ALVHSVILKARKE 60 (715)
Q Consensus 4 ~Eat~vvf~riq~ldPenas--KI~G~lLlqd~~e~emir-----LA~gpd----~ll~~vi~kak~~ 60 (715)
.+..+-+|.|.-++||+|+. ..+|.+.+|...=++-|+ |...|+ ..|..-|.+||..
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~~A~~~ 92 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKL 92 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Confidence 45667789999999999965 566788887766666665 666776 5788888888764
Done!