Query 005083
Match_columns 715
No_of_seqs 338 out of 1504
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 17:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.7E-19 138.8 12.0 85 367-452 28-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.2E-13 9.1E-18 141.5 11.9 82 370-452 266-351 (352)
3 KOG0125 Ataxin 2-binding prote 99.4 2.4E-13 5.1E-18 143.6 7.8 80 370-450 93-174 (376)
4 KOG0111 Cyclophilin-type pepti 99.4 1.8E-13 3.8E-18 138.4 3.3 101 371-489 8-112 (298)
5 KOG0149 Predicted RNA-binding 99.4 6.2E-13 1.3E-17 135.5 7.1 79 369-449 8-90 (247)
6 KOG0153 Predicted RNA-binding 99.4 1.2E-12 2.5E-17 139.2 9.1 80 367-449 222-302 (377)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.2E-12 4.8E-17 136.1 10.6 78 373-451 3-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.3 3.6E-12 7.9E-17 103.2 8.1 67 376-443 1-70 (70)
9 PLN03120 nucleic acid binding 99.3 4.6E-12 9.9E-17 131.8 10.8 76 373-450 4-80 (260)
10 TIGR01659 sex-lethal sex-letha 99.3 4.1E-12 9E-17 137.3 9.9 80 370-450 104-187 (346)
11 TIGR01659 sex-lethal sex-letha 99.3 4.1E-12 8.9E-17 137.3 9.7 83 371-454 191-279 (346)
12 TIGR01645 half-pint poly-U bin 99.3 1.7E-11 3.7E-16 140.5 10.5 78 372-450 203-284 (612)
13 TIGR01645 half-pint poly-U bin 99.2 4.5E-11 9.7E-16 137.1 11.6 76 372-448 106-185 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.2 3.7E-11 8.1E-16 135.8 10.4 86 371-457 283-371 (562)
15 KOG0148 Apoptosis-promoting RN 99.2 4.1E-11 8.9E-16 124.4 9.7 130 319-454 104-242 (321)
16 PLN03121 nucleic acid binding 99.2 1.1E-10 2.4E-15 120.3 10.9 78 371-450 3-81 (243)
17 PLN03213 repressor of silencin 99.2 6.6E-11 1.4E-15 130.2 8.9 78 372-450 9-88 (759)
18 smart00362 RRM_2 RNA recogniti 99.2 2.3E-10 5E-15 90.5 9.3 70 375-445 1-72 (72)
19 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 3E-15 95.5 8.1 67 376-443 1-70 (70)
20 KOG0124 Polypyrimidine tract-b 99.1 6.9E-11 1.5E-15 126.4 7.1 163 375-567 115-290 (544)
21 KOG0113 U1 small nuclear ribon 99.1 1.3E-10 2.8E-15 122.0 8.9 84 371-455 99-186 (335)
22 KOG4207 Predicted splicing fac 99.1 8.2E-11 1.8E-15 118.5 6.9 82 368-450 8-93 (256)
23 KOG0148 Apoptosis-promoting RN 99.1 9.4E-11 2E-15 121.8 6.8 77 374-451 63-143 (321)
24 COG0724 RNA-binding proteins ( 99.1 2.9E-10 6.3E-15 109.6 9.9 76 373-449 115-194 (306)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.6E-10 7.9E-15 126.4 11.5 81 370-451 272-352 (481)
26 TIGR01628 PABP-1234 polyadenyl 99.1 2.5E-10 5.3E-15 129.2 10.1 74 375-449 2-79 (562)
27 KOG0107 Alternative splicing f 99.1 2E-10 4.4E-15 113.2 8.0 79 372-452 9-87 (195)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.1 5.2E-10 1.1E-14 124.2 11.9 79 371-450 293-375 (509)
29 TIGR01622 SF-CC1 splicing fact 99.1 4.4E-10 9.6E-15 123.3 11.0 79 371-450 184-266 (457)
30 KOG0126 Predicted RNA-binding 99.1 7.8E-11 1.7E-15 116.8 4.1 79 372-451 34-116 (219)
31 KOG0144 RNA-binding protein CU 99.1 1.5E-10 3.2E-15 126.1 6.4 86 371-457 122-213 (510)
32 TIGR01622 SF-CC1 splicing fact 99.1 5.2E-10 1.1E-14 122.8 10.5 79 370-450 86-168 (457)
33 PF13893 RRM_5: RNA recognitio 99.1 5.8E-10 1.3E-14 89.2 8.0 56 391-447 1-56 (56)
34 smart00360 RRM RNA recognition 99.0 8.5E-10 1.9E-14 86.7 8.3 63 383-445 5-71 (71)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 6.4E-10 1.4E-14 124.5 10.5 75 373-450 2-78 (481)
36 TIGR01648 hnRNP-R-Q heterogene 99.0 8.5E-10 1.8E-14 126.3 10.7 77 371-452 231-309 (578)
37 KOG0131 Splicing factor 3b, su 99.0 3.2E-10 7E-15 112.4 5.7 78 372-450 8-89 (203)
38 KOG0122 Translation initiation 99.0 9.2E-10 2E-14 113.2 8.9 77 373-450 189-269 (270)
39 TIGR01648 hnRNP-R-Q heterogene 99.0 1E-09 2.2E-14 125.6 9.7 78 371-449 56-137 (578)
40 cd00590 RRM RRM (RNA recogniti 99.0 2.9E-09 6.3E-14 84.6 9.5 71 375-446 1-74 (74)
41 smart00361 RRM_1 RNA recogniti 99.0 2.2E-09 4.7E-14 90.2 7.7 57 388-444 2-69 (70)
42 KOG0121 Nuclear cap-binding pr 99.0 1E-09 2.2E-14 103.9 6.3 78 370-448 33-114 (153)
43 KOG0108 mRNA cleavage and poly 98.9 2.6E-09 5.6E-14 118.7 8.9 80 374-454 19-102 (435)
44 KOG4205 RNA-binding protein mu 98.9 1.2E-09 2.6E-14 116.8 4.4 81 372-454 5-89 (311)
45 KOG0127 Nucleolar protein fibr 98.8 9.5E-09 2.1E-13 114.8 8.5 81 373-454 117-200 (678)
46 KOG0147 Transcriptional coacti 98.8 6.2E-09 1.3E-13 116.4 6.7 80 376-456 281-364 (549)
47 KOG0114 Predicted RNA-binding 98.8 2.1E-08 4.5E-13 92.2 8.1 80 370-450 15-95 (124)
48 KOG0132 RNA polymerase II C-te 98.7 2.2E-08 4.7E-13 115.3 8.9 85 367-454 415-499 (894)
49 TIGR01642 U2AF_lg U2 snRNP aux 98.7 3.1E-08 6.8E-13 110.1 10.0 78 368-449 170-259 (509)
50 KOG4205 RNA-binding protein mu 98.7 1.3E-08 2.9E-13 109.0 5.6 82 372-455 96-181 (311)
51 KOG0117 Heterogeneous nuclear 98.7 2.9E-08 6.3E-13 109.0 8.2 78 371-449 81-163 (506)
52 KOG0117 Heterogeneous nuclear 98.7 5.1E-08 1.1E-12 107.1 8.5 78 371-453 257-334 (506)
53 KOG0105 Alternative splicing f 98.7 4.2E-08 9.1E-13 97.9 6.9 80 370-450 3-83 (241)
54 KOG0144 RNA-binding protein CU 98.6 4.9E-08 1.1E-12 106.8 7.5 85 368-453 29-120 (510)
55 KOG0145 RNA-binding protein EL 98.6 1.7E-07 3.7E-12 97.5 9.1 81 370-451 38-122 (360)
56 KOG0127 Nucleolar protein fibr 98.6 7.6E-08 1.7E-12 107.7 6.8 79 374-453 6-88 (678)
57 KOG0145 RNA-binding protein EL 98.6 1.9E-07 4.1E-12 97.2 9.0 78 372-450 277-358 (360)
58 KOG0123 Polyadenylate-binding 98.6 1.4E-07 3.1E-12 103.3 8.4 76 376-453 79-156 (369)
59 KOG0130 RNA-binding protein RB 98.6 7.7E-08 1.7E-12 92.1 5.5 85 367-452 66-154 (170)
60 KOG4212 RNA-binding protein hn 98.5 1.8E-07 3.9E-12 102.6 8.2 80 368-448 39-122 (608)
61 KOG4206 Spliceosomal protein s 98.5 3.7E-07 8E-12 93.3 7.8 84 371-455 7-95 (221)
62 KOG0124 Polypyrimidine tract-b 98.3 3.2E-07 7E-12 98.9 3.7 127 319-448 155-288 (544)
63 KOG0123 Polyadenylate-binding 98.3 1.3E-06 2.8E-11 95.8 8.0 73 375-451 3-76 (369)
64 KOG0415 Predicted peptidyl pro 98.3 1.1E-06 2.4E-11 94.7 6.7 78 371-449 237-318 (479)
65 KOG0131 Splicing factor 3b, su 98.3 9.3E-07 2E-11 88.2 5.0 83 371-454 94-181 (203)
66 KOG0109 RNA-binding protein LA 98.3 1.3E-06 2.8E-11 92.3 6.2 75 374-453 3-77 (346)
67 KOG0110 RNA-binding protein (R 98.2 2.7E-06 5.9E-11 97.9 7.8 72 376-448 518-596 (725)
68 KOG0109 RNA-binding protein LA 98.2 2.3E-06 5.1E-11 90.4 6.4 81 370-455 75-155 (346)
69 KOG4454 RNA binding protein (R 98.2 1E-06 2.3E-11 90.0 3.7 83 367-451 3-88 (267)
70 KOG0146 RNA-binding protein ET 98.1 4.1E-06 8.8E-11 87.8 7.0 80 372-452 18-103 (371)
71 KOG4661 Hsp27-ERE-TATA-binding 98.1 4.2E-06 9.1E-11 94.3 6.6 77 372-449 404-484 (940)
72 KOG0146 RNA-binding protein ET 98.1 2.8E-06 6.1E-11 88.9 4.6 80 372-452 284-367 (371)
73 KOG0110 RNA-binding protein (R 98.1 2.7E-06 5.9E-11 97.9 4.9 79 373-452 613-695 (725)
74 KOG4208 Nucleolar RNA-binding 98.0 9.3E-06 2E-10 82.4 6.9 76 374-450 50-130 (214)
75 KOG0116 RasGAP SH3 binding pro 97.9 1.9E-05 4.1E-10 88.0 6.7 74 374-449 289-366 (419)
76 KOG0533 RRM motif-containing p 97.7 0.0001 2.2E-09 77.0 8.4 80 368-448 78-160 (243)
77 KOG0106 Alternative splicing f 97.7 2.9E-05 6.4E-10 79.7 4.1 72 374-450 2-73 (216)
78 KOG4209 Splicing factor RNPS1, 97.7 4.8E-05 1E-09 78.9 5.6 78 371-450 99-180 (231)
79 KOG4212 RNA-binding protein hn 97.7 7E-05 1.5E-09 82.8 7.0 76 368-446 531-607 (608)
80 KOG0226 RNA-binding proteins [ 97.7 3.1E-05 6.7E-10 80.9 4.0 85 374-459 191-279 (290)
81 KOG2135 Proteins containing th 97.6 8.2E-05 1.8E-09 83.0 5.4 86 363-451 362-447 (526)
82 KOG0151 Predicted splicing reg 97.5 0.0002 4.3E-09 83.0 7.6 79 370-449 171-256 (877)
83 KOG4660 Protein Mei2, essentia 97.3 0.00011 2.5E-09 83.1 3.1 73 369-443 71-143 (549)
84 KOG0147 Transcriptional coacti 97.3 0.0001 2.2E-09 83.4 2.1 76 372-449 178-257 (549)
85 KOG1190 Polypyrimidine tract-b 97.2 0.00083 1.8E-08 74.2 8.2 76 373-449 297-372 (492)
86 PF00642 zf-CCCH: Zinc finger 97.1 0.00012 2.5E-09 52.0 -0.2 23 231-253 3-26 (27)
87 KOG4211 Splicing factor hnRNP- 97.0 0.0017 3.7E-08 73.1 8.1 73 375-450 12-86 (510)
88 KOG1548 Transcription elongati 96.9 0.0075 1.6E-07 65.7 11.2 78 370-448 131-219 (382)
89 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0038 8.2E-08 50.9 5.5 52 374-429 2-53 (53)
90 smart00356 ZnF_C3H1 zinc finge 96.6 0.0012 2.7E-08 45.6 1.7 22 232-253 5-26 (27)
91 COG5175 MOT2 Transcriptional r 96.3 0.0073 1.6E-07 65.6 6.6 79 370-448 111-201 (480)
92 KOG4211 Splicing factor hnRNP- 96.3 0.016 3.6E-07 65.5 9.6 75 372-448 102-180 (510)
93 KOG0106 Alternative splicing f 96.2 0.003 6.5E-08 65.3 3.0 70 371-445 97-166 (216)
94 KOG1548 Transcription elongati 96.1 0.024 5.1E-07 62.0 9.1 86 367-452 259-354 (382)
95 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.022 4.8E-07 52.5 7.6 64 379-448 13-90 (100)
96 KOG1457 RNA binding protein (c 96.0 0.022 4.7E-07 59.4 8.0 83 371-454 32-122 (284)
97 PF04059 RRM_2: RNA recognitio 96.0 0.033 7.2E-07 51.0 8.1 74 374-448 2-85 (97)
98 KOG4307 RNA binding protein RB 95.9 0.0098 2.1E-07 69.4 5.3 81 371-452 432-516 (944)
99 KOG4210 Nuclear localization s 95.9 0.0054 1.2E-07 65.7 3.0 80 371-452 182-266 (285)
100 KOG0120 Splicing factor U2AF, 95.6 0.028 6.1E-07 64.3 7.5 61 389-449 424-491 (500)
101 KOG1456 Heterogeneous nuclear 95.6 0.07 1.5E-06 59.0 9.9 78 371-449 285-362 (494)
102 PF00658 PABP: Poly-adenylate 95.5 0.013 2.8E-07 51.0 3.4 50 8-60 22-71 (72)
103 KOG0120 Splicing factor U2AF, 95.2 0.016 3.6E-07 66.2 3.7 82 370-452 286-371 (500)
104 smart00517 PolyA C-terminal do 95.1 0.023 5E-07 48.6 3.6 50 8-60 11-60 (64)
105 PF11608 Limkain-b1: Limkain b 95.1 0.07 1.5E-06 48.2 6.7 69 375-450 4-77 (90)
106 PF08777 RRM_3: RNA binding mo 94.9 0.035 7.5E-07 51.3 4.5 55 376-433 4-58 (105)
107 KOG0129 Predicted RNA-binding 94.8 0.071 1.5E-06 60.8 7.5 78 369-451 255-342 (520)
108 KOG1855 Predicted RNA-binding 94.7 0.018 3.8E-07 64.4 2.4 74 371-445 229-319 (484)
109 KOG2314 Translation initiation 94.7 0.036 7.8E-07 63.7 4.7 57 389-445 79-139 (698)
110 PF14608 zf-CCCH_2: Zinc finge 94.6 0.019 4E-07 38.0 1.5 19 233-253 1-19 (19)
111 PF08952 DUF1866: Domain of un 94.2 0.16 3.5E-06 49.9 7.4 73 371-448 25-105 (146)
112 KOG1995 Conserved Zn-finger pr 94.0 0.061 1.3E-06 59.0 4.7 84 369-453 62-157 (351)
113 KOG0129 Predicted RNA-binding 93.8 0.17 3.6E-06 57.9 7.6 87 358-448 357-452 (520)
114 KOG2185 Predicted RNA-processi 93.6 0.026 5.7E-07 62.7 1.0 26 230-255 139-164 (486)
115 KOG1677 CCCH-type Zn-finger pr 93.6 0.035 7.6E-07 59.6 1.8 28 227-254 173-201 (332)
116 KOG2202 U2 snRNP splicing fact 93.2 0.035 7.6E-07 58.6 1.1 59 389-447 83-145 (260)
117 KOG4206 Spliceosomal protein s 92.3 0.46 1E-05 49.5 7.7 76 370-447 143-219 (221)
118 KOG3152 TBP-binding protein, a 91.1 0.13 2.7E-06 54.6 2.1 67 374-441 75-157 (278)
119 KOG1457 RNA binding protein (c 89.3 0.42 9.1E-06 50.2 4.1 69 368-437 205-273 (284)
120 KOG1996 mRNA splicing factor [ 89.0 0.9 1.9E-05 49.3 6.4 61 388-448 300-365 (378)
121 PF04847 Calcipressin: Calcipr 88.9 1.1 2.4E-05 45.5 6.8 62 387-450 8-71 (184)
122 PF10309 DUF2414: Protein of u 88.9 1.6 3.5E-05 37.3 6.6 55 373-432 5-62 (62)
123 KOG1456 Heterogeneous nuclear 88.6 1.4 3E-05 49.2 7.7 77 373-450 120-199 (494)
124 PF15023 DUF4523: Protein of u 88.4 1.5 3.2E-05 43.4 6.9 74 370-447 83-159 (166)
125 KOG4849 mRNA cleavage factor I 87.2 0.67 1.5E-05 51.2 4.3 73 375-448 82-160 (498)
126 KOG2068 MOT2 transcription fac 86.4 0.27 5.9E-06 53.8 0.8 80 371-450 75-163 (327)
127 KOG4285 Mitotic phosphoprotein 86.4 1.1 2.3E-05 48.8 5.2 61 387-450 209-270 (350)
128 KOG1039 Predicted E3 ubiquitin 86.1 0.28 6.1E-06 54.2 0.7 22 232-253 9-30 (344)
129 PF08675 RNA_bind: RNA binding 85.8 3 6.6E-05 37.9 6.9 57 371-433 7-63 (87)
130 KOG4676 Splicing factor, argin 84.2 1.6 3.4E-05 49.1 5.3 74 375-450 9-89 (479)
131 KOG4307 RNA binding protein RB 83.1 3.4 7.4E-05 49.4 7.6 66 381-446 874-943 (944)
132 KOG2193 IGF-II mRNA-binding pr 81.3 3 6.6E-05 47.3 6.1 76 374-452 2-78 (584)
133 KOG1190 Polypyrimidine tract-b 81.2 4 8.6E-05 46.2 7.0 77 371-448 412-489 (492)
134 KOG2891 Surface glycoprotein [ 78.6 2.3 4.9E-05 46.0 3.9 37 372-408 148-195 (445)
135 KOG0112 Large RNA-binding prot 77.7 2.6 5.5E-05 51.5 4.5 82 370-454 452-535 (975)
136 KOG0128 RNA-binding protein SA 75.4 1.5 3.2E-05 53.2 1.7 75 373-448 736-813 (881)
137 KOG0128 RNA-binding protein SA 75.3 0.46 1E-05 57.2 -2.4 73 371-444 665-741 (881)
138 KOG1365 RNA-binding protein Fu 75.0 2.4 5.3E-05 47.5 3.1 76 370-446 156-239 (508)
139 PF03880 DbpA: DbpA RNA bindin 71.1 12 0.00027 32.1 5.9 59 384-447 11-74 (74)
140 KOG0105 Alternative splicing f 69.6 14 0.0003 38.3 6.8 73 371-447 113-187 (241)
141 KOG0115 RNA-binding protein p5 68.8 4.3 9.2E-05 43.5 3.1 74 374-448 32-112 (275)
142 KOG0112 Large RNA-binding prot 68.7 1.2 2.5E-05 54.2 -1.1 77 370-447 369-448 (975)
143 KOG2494 C3H1-type Zn-finger pr 66.9 2 4.2E-05 47.2 0.2 23 231-253 37-60 (331)
144 KOG1763 Uncharacterized conser 65.5 2.3 5E-05 46.2 0.4 22 232-253 93-114 (343)
145 KOG1365 RNA-binding protein Fu 65.5 5.7 0.00012 44.7 3.4 74 374-448 281-360 (508)
146 KOG2416 Acinus (induces apopto 65.4 6 0.00013 46.6 3.7 80 366-448 437-520 (718)
147 COG5084 YTH1 Cleavage and poly 65.1 3.2 6.9E-05 45.0 1.4 24 231-254 134-158 (285)
148 PF07576 BRAP2: BRCA1-associat 60.9 45 0.00098 31.4 8.0 66 374-439 13-81 (110)
149 KOG1040 Polyadenylation factor 57.5 6.4 0.00014 43.5 2.0 26 228-253 74-99 (325)
150 KOG1492 C3H1-type Zn-finger pr 55.2 5 0.00011 42.2 0.8 21 233-253 208-229 (377)
151 PF10650 zf-C3H1: Putative zin 55.1 6.7 0.00015 27.6 1.1 19 233-252 2-21 (23)
152 COG5152 Uncharacterized conser 54.4 5 0.00011 41.7 0.6 25 229-253 139-164 (259)
153 KOG2591 c-Mpl binding protein, 52.0 18 0.00039 42.6 4.5 71 371-444 172-246 (684)
154 KOG4210 Nuclear localization s 51.2 8.6 0.00019 41.6 1.8 80 371-451 86-169 (285)
155 KOG1595 CCCH-type Zn-finger pr 50.7 7.8 0.00017 45.1 1.4 24 230-253 235-258 (528)
156 KOG1040 Polyadenylation factor 42.3 9.7 0.00021 42.1 0.5 26 229-254 132-157 (325)
157 KOG1677 CCCH-type Zn-finger pr 37.2 16 0.00036 39.3 1.3 27 227-253 128-156 (332)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 32.0 76 0.0016 32.0 4.9 67 372-439 6-82 (176)
159 KOG4574 RNA-binding protein (c 31.9 28 0.0006 42.9 2.1 76 371-449 296-373 (1007)
160 COG5252 Uncharacterized conser 29.4 19 0.00042 38.4 0.2 22 232-253 86-107 (299)
161 KOG4454 RNA binding protein (R 29.2 12 0.00025 39.7 -1.4 62 383-444 93-157 (267)
162 KOG1813 Predicted E3 ubiquitin 28.9 19 0.00041 39.5 0.1 25 229-253 184-209 (313)
163 COG5084 YTH1 Cleavage and poly 28.7 28 0.00061 38.0 1.3 24 230-253 103-126 (285)
164 PF15513 DUF4651: Domain of un 26.4 87 0.0019 27.1 3.6 18 389-406 9-26 (62)
165 KOG2253 U1 snRNP complex, subu 26.0 30 0.00065 41.5 1.0 69 372-446 39-107 (668)
166 PF11767 SET_assoc: Histone ly 25.6 4.2E+02 0.0092 23.0 7.6 58 382-444 8-65 (66)
167 KOG2333 Uncharacterized conser 24.3 36 0.00078 39.8 1.2 25 233-257 116-141 (614)
168 KOG1492 C3H1-type Zn-finger pr 22.4 33 0.00071 36.3 0.4 23 232-255 262-284 (377)
169 KOG2494 C3H1-type Zn-finger pr 21.2 44 0.00096 37.1 1.1 23 230-253 70-92 (331)
170 PF03468 XS: XS domain; Inter 20.5 1.1E+02 0.0025 29.0 3.5 44 387-431 30-76 (116)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.3e-14 Score=138.77 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=77.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 005083 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I 442 (715)
++....+++|||+++ +++++|++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 28 ~~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 28 GSLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455566789999988 678999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEEeCccCCC
Q 005083 443 LVKPYKEKGK 452 (715)
Q Consensus 443 ~Vk~AkeK~k 452 (715)
+|+++.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=4.2e-13 Score=141.52 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+||+|+|.
T Consensus 266 ~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 266 DGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344568999998 578999999999999999999999987 689999999999999999999999999999999999
Q ss_pred eCccCCC
Q 005083 446 PYKEKGK 452 (715)
Q Consensus 446 ~AkeK~k 452 (715)
+...|.+
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9988764
No 3
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=143.60 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
....+.|||.+| .|+++|.||+.+|.+||+|.||+|+.. -+||||||||++.++|++|-++|++..|.||+|+|..+
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 455689999987 799999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccC
Q 005083 448 KEK 450 (715)
Q Consensus 448 keK 450 (715)
..|
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 877
No 4
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.8e-13 Score=138.41 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=85.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
-..|||||+.+++ .++|..|...|-.||.|.+|.||.| ++||||||+|...|+|..|+++||..+|+||.|+|..
T Consensus 8 ~~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4579999999865 7999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 005083 447 YKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLG 489 (715)
Q Consensus 447 AkeK~k~~~~~rkqqq~~qrG~~s~~~sp~g~D~~~pfd~q~G 489 (715)
+++.+-... .+.|.+.| ++|+..+.|
T Consensus 87 AkP~kikeg----------------sqkPvWAD-DdWlkk~~g 112 (298)
T KOG0111|consen 87 AKPEKIKEG----------------SQKPVWAD-DDWLKKQQG 112 (298)
T ss_pred cCCccccCC----------------CCCCcccC-cHHHHHhcc
Confidence 987543221 12466666 667776543
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6.2e-13 Score=135.53 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
.|..=.+||||++ .|.++.|+|++||++||+|+++.|+.| |+||||||||.+.|.|.+|++. ...+||||+..|
T Consensus 8 ~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 4556689999998 799999999999999999999999998 9999999999999999999998 678899999999
Q ss_pred EeCcc
Q 005083 445 KPYKE 449 (715)
Q Consensus 445 k~Ake 449 (715)
+.+.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98753
No 6
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=139.23 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEE
Q 005083 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~m-Ng~~L~GR~I~Vk 445 (715)
+..+...+||||+++.+ .++|.+|+++|.+||+|+.|+|.. .+++|||+|.+.+.|+.|.++. |...|+|++|.|+
T Consensus 222 pPeD~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45678899999999876 899999999999999999999988 7889999999999999998765 6789999999999
Q ss_pred eCcc
Q 005083 446 PYKE 449 (715)
Q Consensus 446 ~Ake 449 (715)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9887
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=2.2e-12 Score=136.07 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=73.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
..+|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|.|++|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 679999998 679999999999999999999999986 688999999999999999999999999999999999987
Q ss_pred cCC
Q 005083 449 EKG 451 (715)
Q Consensus 449 eK~ 451 (715)
++.
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=3.6e-12 Score=103.16 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=62.9
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
|||+++ +.++++++|+++|++||.|..|.|+.+ +++|||||+|.+.++|++|++.|+++.|+|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799987 578999999999999999999999884 7899999999999999999999999999999985
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=4.6e-12 Score=131.82 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK 450 (715)
.++|||++| +++++|++|+++|+.||+|++|+|+.| .++|||||+|.++++|+.||. ||++.|+||.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 689999988 578999999999999999999999998 478999999999999999996 7999999999999997644
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=4.1e-12 Score=137.26 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||++.|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456789999987 678999999999999999999999987 789999999999999999999999999999999999
Q ss_pred eCccC
Q 005083 446 PYKEK 450 (715)
Q Consensus 446 ~AkeK 450 (715)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88654
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=4.1e-12 Score=137.30 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~G--R~I~V 444 (715)
..+++|||+++ +++++|++|+++|++||+|++|+|++| ++||||||+|.+.++|++||+.||++.|+| ++|+|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 35678999988 678999999999999999999999986 678999999999999999999999999977 78999
Q ss_pred EeCccCCCCc
Q 005083 445 KPYKEKGKVP 454 (715)
Q Consensus 445 k~AkeK~k~~ 454 (715)
+++.++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998765543
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.7e-11 Score=140.53 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=72.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ +.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999988 578999999999999999999999986 68999999999999999999999999999999999988
Q ss_pred ccC
Q 005083 448 KEK 450 (715)
Q Consensus 448 keK 450 (715)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 754
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=4.5e-11 Score=137.13 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=70.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..++|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+||+|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999987 789999999999999999999999987 79999999999999999999999999999999999864
Q ss_pred c
Q 005083 448 K 448 (715)
Q Consensus 448 k 448 (715)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=3.7e-11 Score=135.75 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
....+|||+++ ++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568999987 568999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCCCCchHH
Q 005083 448 KEKGKVPDKY 457 (715)
Q Consensus 448 keK~k~~~~~ 457 (715)
..|..+....
T Consensus 362 ~~k~~~~~~~ 371 (562)
T TIGR01628 362 QRKEQRRAHL 371 (562)
T ss_pred cCcHHHHHHH
Confidence 8776544433
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.1e-11 Score=124.41 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=95.4
Q ss_pred chhhhhHhhhhhHHHHHHHH-HHhhhhhhhhcccCCcccccccccCCCC--------CCCCCCcceEEEcCCCCCCCCHH
Q 005083 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSRLERNDFSINGSA--------GIVNPASRQIYLTFPADSTFREE 389 (715)
Q Consensus 319 k~~~~llq~~~~esQR~~~~-~a~~~gdd~~k~gr~R~~RsDF~~~g~~--------gs~~~~sRtIYV~~~~~~~~TEe 389 (715)
|.|+|+..-...+++++..+ .+--+|-+..+.-- .-|.. ..|++. ....+.+.++|||+++. -++|+
T Consensus 104 KGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW--ATRKp-~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~-~lte~ 179 (321)
T KOG0148|consen 104 KGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW--ATRKP-SEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS-GLTED 179 (321)
T ss_pred cceeEEeccchHHHHHHHHHhCCeeeccceeeccc--cccCc-cccCCCCccHHHHhccCCCCCceEEeCCcCc-cccHH
Confidence 56677666556677887754 01112333222210 11111 122222 24468889999999966 68999
Q ss_pred HHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCCc
Q 005083 390 DVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVP 454 (715)
Q Consensus 390 dLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~k~~ 454 (715)
++|+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+..|.|..|++.|-++.....
T Consensus 180 ~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 180 LMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 9999999999999999988 68999999999999999999999999999999999988765443
No 16
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=120.26 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
+...+|||+++ ++++||++|+++|+.||+|++|+|++| +.+|||||+|.+++.++.|+. |++..|.+++|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 44589999988 789999999999999999999999998 677899999999999999995 599999999999998765
Q ss_pred C
Q 005083 450 K 450 (715)
Q Consensus 450 K 450 (715)
-
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=99.16 E-value=6.6e-11 Score=130.20 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCH--HHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~--EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
..-+||||++ .|.++++||+..|++||.|.+|.||+...||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999988 7899999999999999999999999887799999999987 789999999999999999999998876
Q ss_pred C
Q 005083 450 K 450 (715)
Q Consensus 450 K 450 (715)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.3e-10 Score=90.50 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=63.9
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
+|||+++ +..+++++|+++|.+||+|.+|++..+ .++|+|||+|.+.+.|++|++.++++.+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899988 567899999999999999999999875 367999999999999999999999999999999874
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1.4e-10 Score=95.53 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
|||++++ +.+++++|+++|+.||.|.+|++.++ +.+|+|||+|.+.++|++|++..+++.|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999885 57999999999999999999999986 3589999999999999999999888999999985
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.9e-11 Score=126.41 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=112.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK 450 (715)
.||||-| .|.+.|+.||..|..||+|++|.+-.| ++||||||+|+-+|.|+.|++.||+..+.||.|+|.+-..-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 5788865 789999999999999999999999776 99999999999999999999999999999999999843322
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Q 005083 451 GKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLD 530 (715)
Q Consensus 451 ~k~~~~~rkqqq~~qrG~~s~~~sp~g~D~~~pfd~q~G~R~~~nn~~eml~RrklEEq~ElqqAiElqrrrL~~lql~~ 530 (715)
..-..-.-.-+++.. .-.|.|..+.|.-| -| .+++..+|--.+-+.+ ||.-
T Consensus 194 pQAQpiID~vqeeAk----------------------~fnRiYVaSvHpDL-----Se-~DiKSVFEAFG~I~~C-~LAr 244 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK----------------------KFNRIYVASVHPDL-----SE-TDIKSVFEAFGEIVKC-QLAR 244 (544)
T ss_pred cccchHHHHHHHHHH----------------------hhheEEeeecCCCc-----cH-HHHHHHHHhhcceeeE-Eeec
Confidence 111100000011111 11245544444322 12 3445566665543333 3333
Q ss_pred ccc-cccc--------ccccCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005083 531 VKK-HHHH--------RALSTGSPIPSPTHSPNIFHQNLVFPPLHS 567 (715)
Q Consensus 531 ~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (715)
-.+ +.|+ +.+|+-.+|+.++-|++.++--++.-|.-+
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 333 3355 577888999999999999988887765543
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.3e-10 Score=121.95 Aligned_cols=84 Identities=13% Similarity=0.263 Sum_probs=75.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
--=+||||+.+ .++++|..|++.|+.||+|+.|+||+| ++||||||+|.++.++..|.+..++..|+|++|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34489999987 689999999999999999999999997 9999999999999999999999999999999999987
Q ss_pred CccCCCCch
Q 005083 447 YKEKGKVPD 455 (715)
Q Consensus 447 AkeK~k~~~ 455 (715)
-..+....+
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 665544433
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.12 E-value=8.2e-11 Score=118.51 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
.....-.+|-|-+| .+.++.++|+.+|++||.|-+|.||.| ++||||||-|.+..+|+.|++.|++..|+|+.|.
T Consensus 8 Pdv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33444567788766 688999999999999999999999998 8999999999999999999999999999999999
Q ss_pred EEeCccC
Q 005083 444 VKPYKEK 450 (715)
Q Consensus 444 Vk~AkeK 450 (715)
|..++..
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9887644
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.4e-11 Score=121.78 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
--++|+++ ...++-|+||+.|.+||+|.+++|++| |+||||||.|-+.++|+.||..||++.|.+|.|+-.|+..
T Consensus 63 fhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 35788877 457899999999999999999999998 9999999999999999999999999999999999999987
Q ss_pred CC
Q 005083 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 76
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.9e-10 Score=109.61 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.8
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
.++|||+++ ++++++++|+++|.+||.|..|+|+.| ++||||||+|.+.+++..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999988 589999999999999999999999886 899999999999999999999999999999999999965
Q ss_pred c
Q 005083 449 E 449 (715)
Q Consensus 449 e 449 (715)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=3.6e-10 Score=126.42 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=73.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
...+++|||+++....+++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|++.||++.|.|++|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3567899999997667999999999999999999999986 579999999999999999999999999999999998765
Q ss_pred CC
Q 005083 450 KG 451 (715)
Q Consensus 450 K~ 451 (715)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 43
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.5e-10 Score=129.16 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
+|||+++ +.++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+|+..|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999988 578999999999999999999999986 6789999999999999999999999999999999998753
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2e-10 Score=113.24 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~ 451 (715)
..++|||+++ ..++++.+|+..|+.||+|.+|.|-. ...|||||+|+++.+|+.|+..|++..|||.+|+|.....+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3689999988 57899999999999999999999977 689999999999999999999999999999999999876554
Q ss_pred C
Q 005083 452 K 452 (715)
Q Consensus 452 k 452 (715)
+
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=5.2e-10 Score=124.19 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
...++|||+++ ++.+++++|+++|++||.|..|+|+++ +++|||||+|.+.+.|..|++.||+..|+|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999988 678999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred CccC
Q 005083 447 YKEK 450 (715)
Q Consensus 447 AkeK 450 (715)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.08 E-value=4.4e-10 Score=123.28 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
+..++|||++++ +.++|++|+++|++||.|+.|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 447999999884 68999999999999999999999976 6789999999999999999999999999999999999
Q ss_pred CccC
Q 005083 447 YKEK 450 (715)
Q Consensus 447 AkeK 450 (715)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8744
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=7.8e-11 Score=116.77 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
.+--||||++ ++.+||.||-..|++||+|++|.+++| +++||||+.|++..+.-.|+.+|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3567999987 789999999999999999999999998 99999999999999999999999999999999999876
Q ss_pred ccCC
Q 005083 448 KEKG 451 (715)
Q Consensus 448 keK~ 451 (715)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5443
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.5e-10 Score=126.14 Aligned_cols=86 Identities=21% Similarity=0.303 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCC-ceE--cCeEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP-HFV--CDARVLV 444 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg-~~L--~GR~I~V 444 (715)
...|+|||+.+ ...++|.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+ +.+ |..++.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 44688999876 568999999999999999999999997 9999999999999999999999997 444 5689999
Q ss_pred EeCccCCCCchHH
Q 005083 445 KPYKEKGKVPDKY 457 (715)
Q Consensus 445 k~AkeK~k~~~~~ 457 (715)
+++..++.+..+.
T Consensus 201 kFADtqkdk~~~~ 213 (510)
T KOG0144|consen 201 KFADTQKDKDGKR 213 (510)
T ss_pred EecccCCCchHHH
Confidence 9998766554443
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=5.2e-10 Score=122.76 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
....++|||+++ ++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||. |++..|.|+.|.|+
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 466789999988 578999999999999999999999986 689999999999999999997 59999999999998
Q ss_pred eCccC
Q 005083 446 PYKEK 450 (715)
Q Consensus 446 ~AkeK 450 (715)
....+
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 33
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=5.8e-10 Score=89.16 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.0
Q ss_pred HHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 391 Lre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
|.++|++||+|++|.+...+ +++|||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999874
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=8.5e-10 Score=86.73 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 383 ~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
++.+++++|+++|++||.|..|+|..+ +++|||||+|.+.++|.+|++.++++.++|+.|.|.
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 577899999999999999999999875 458999999999999999999999999999999873
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.05 E-value=6.4e-10 Score=124.47 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHh--CCCceEcCeEEEEEeCccC
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~--mNg~~L~GR~I~Vk~AkeK 450 (715)
+|+|||+++ +++++|++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++. +++..|+|+.|+|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 689999988 67899999999999999999999997 789999999999999999986 4789999999999998654
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=8.5e-10 Score=126.28 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcC--CCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqF--G~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
...++|||+++ ++.++|++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999988 6789999999999999 999999886 5799999999999999999999999999999999998
Q ss_pred cCCC
Q 005083 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7654
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=3.2e-10 Score=112.40 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=72.4
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
+..|||||++ +..++|+.|.++|-+.|+|++|+||+| ..+|||||+|.++|+|+-|++.||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4579999988 568999999999999999999999997 79999999999999999999999999999999999988
Q ss_pred ccC
Q 005083 448 KEK 450 (715)
Q Consensus 448 keK 450 (715)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 733
No 38
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.2e-10 Score=113.20 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=72.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
..+|-|+++. -+++|++|+++|.+||.|.+|.|.+| .+||||||+|.+.++|.+||+.|||+-+++-.|+|.|++
T Consensus 189 ~~tvRvtNLs-ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLS-EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCc-cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5689999884 57999999999999999999999997 899999999999999999999999999999999999998
Q ss_pred cC
Q 005083 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.99 E-value=1e-09 Score=125.65 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~-GR~I~Vk~ 446 (715)
....+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999988 578999999999999999999999987 89999999999999999999999998885 78887776
Q ss_pred Ccc
Q 005083 447 YKE 449 (715)
Q Consensus 447 Ake 449 (715)
+.+
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 643
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=2.9e-09 Score=84.59 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
+|||+++ ++.+++++|+++|..||+|..+.+..+ +.+|+|||+|.+.+.|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5889887 456899999999999999999999886 3589999999999999999999999999999999863
No 41
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=2.2e-09 Score=90.22 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.5
Q ss_pred HHHHHHhhh----cCCCeEEEE-eecc------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 388 EedLre~FS----qFG~V~dVr-Ip~D------ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|++.||+..++||.|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 42
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1e-09 Score=103.93 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
.+.+.||||+++ ++-++||+|.++|+++|+|..|.|-.| ..-||+||+|-..++|+.|+.-++++.|+.|.|+|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 367889999987 678999999999999999999988776 566999999999999999999999999999999998
Q ss_pred eCc
Q 005083 446 PYK 448 (715)
Q Consensus 446 ~Ak 448 (715)
|-.
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 753
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2.6e-09 Score=118.73 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=75.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
+.||||++ .++++|++|.++|++.|.|.++++++| +.|||||++|.+.++++.|++.||+..+.||+|+|.++..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 99999987 789999999999999999999999997 9999999999999999999999999999999999999876
Q ss_pred CCCCc
Q 005083 450 KGKVP 454 (715)
Q Consensus 450 K~k~~ 454 (715)
+....
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 65433
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=1.2e-09 Score=116.84 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=75.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
...+|+|+.+ +|.+++|.|++||++||+|.+|.|++| ++|||+||+|.+.+.+.++|.. ..|.|+||.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 6789999987 899999999999999999999999998 9999999999999999999987 789999999999999
Q ss_pred ccCCCCc
Q 005083 448 KEKGKVP 454 (715)
Q Consensus 448 keK~k~~ 454 (715)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 8876543
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=9.5e-09 Score=114.77 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=73.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
.-.|.|.++ +|.+.+.+|..+|+.||.|.+|.||+. +-.|||||+|.+..+|..|++.+|++.|+||+|-|.||..
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 446777766 799999999999999999999999983 7779999999999999999999999999999999999998
Q ss_pred CCCCc
Q 005083 450 KGKVP 454 (715)
Q Consensus 450 K~k~~ 454 (715)
|....
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 86543
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.80 E-value=6.2e-09 Score=116.37 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=74.3
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCC
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~ 451 (715)
+||+++ +++++|++|+.+|+.||.|+.|.+++| +++|||||||.+.++|++|++.||+-+|-||.|+|....++.
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999987 789999999999999999999999987 899999999999999999999999999999999999888876
Q ss_pred CCchH
Q 005083 452 KVPDK 456 (715)
Q Consensus 452 k~~~~ 456 (715)
+..+.
T Consensus 360 ~~~~a 364 (549)
T KOG0147|consen 360 DTKEA 364 (549)
T ss_pred ccccc
Confidence 65543
No 47
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.1e-08 Score=92.22 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
...+|-+||.++ ++++|.|++-++|++||.|..|||-.. .-||-|||.|++..+|++|++.|++..+++|-+.|-.++
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 456788999977 789999999999999999999999665 789999999999999999999999999999999999887
Q ss_pred cC
Q 005083 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 48
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=2.2e-08 Score=115.35 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
......+|||||+.+ +.+++|.||+++|+.||+|++|.++. .||+|||+.....+|++|+.+|+.+.+.++.|+|.|
T Consensus 415 d~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred cceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 355678899999998 67899999999999999999999998 999999999999999999999999999999999999
Q ss_pred CccCCCCc
Q 005083 447 YKEKGKVP 454 (715)
Q Consensus 447 AkeK~k~~ 454 (715)
+..++.+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99887765
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.74 E-value=3.1e-08 Score=110.12 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcC------------CCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCc
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqF------------G~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~ 435 (715)
...+..|+|||++| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 45678899999998 5789999999999974 4666777665 78999999999999999995 7999
Q ss_pred eEcCeEEEEEeCcc
Q 005083 436 FVCDARVLVKPYKE 449 (715)
Q Consensus 436 ~L~GR~I~Vk~Ake 449 (715)
.|.|+.|+|.+...
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999976543
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=1.3e-08 Score=108.96 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=75.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..++|+|+.+ +.+++|+++++||.+||.|.++.+++| ++||||||+|.+++.+++++.. .-|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 4679999987 578999999999999999999999998 8999999999999999999988 899999999999999
Q ss_pred ccCCCCch
Q 005083 448 KEKGKVPD 455 (715)
Q Consensus 448 keK~k~~~ 455 (715)
.+|.....
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 99876543
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.9e-08 Score=108.97 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE-cCeEEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L-~GR~I~Vk 445 (715)
..-..||||.| +-++.|++|.-+|++.|+|-++|||.| .+||||||||.+.+.|++|++.+|+++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55679999988 568999999999999999999999997 9999999999999999999999999988 78999886
Q ss_pred eCcc
Q 005083 446 PYKE 449 (715)
Q Consensus 446 ~Ake 449 (715)
....
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 6543
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=5.1e-08 Score=107.06 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK 450 (715)
..-+-|||.++. -++|||.|++.|++||.|++|..++| ||||-|.+.++|.+|++.||+..|+|..|.|..|++-
T Consensus 257 s~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 445789999885 57999999999999999999999875 9999999999999999999999999999999999875
Q ss_pred CCC
Q 005083 451 GKV 453 (715)
Q Consensus 451 ~k~ 453 (715)
.+.
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 543
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=4.2e-08 Score=97.94 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
.+.+++|||+++ +.++.|.+|+++|.+||.|.+|.+..- ....||||+|+++.+|+.|+.--++..++|.+|+|..+.
T Consensus 3 gr~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 3 GRNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred CcccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 366799999988 468999999999999999999998542 446799999999999999999999999999999999876
Q ss_pred cC
Q 005083 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 44
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4.9e-08 Score=106.85 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCc-eE--cCe
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDA 440 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~-~L--~GR 440 (715)
..+...-++||+.| +-+++|+|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..++.. .| ...
T Consensus 29 ~~d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 44567779999987 568999999999999999999999998 88999999999999999999998653 44 346
Q ss_pred EEEEEeCccCCCC
Q 005083 441 RVLVKPYKEKGKV 453 (715)
Q Consensus 441 ~I~Vk~AkeK~k~ 453 (715)
+|.|+++...+++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 8899998755544
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.7e-07 Score=97.50 Aligned_cols=81 Identities=12% Similarity=0.300 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
+.+...+.|..+ +-..|+|+||.+|+..|+|++|++++| ++-|||||-|.++++|++|+..+|+..|..+.|+|.
T Consensus 38 ~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred Ccccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 344455666655 568999999999999999999999998 888999999999999999999999999999999999
Q ss_pred eCccCC
Q 005083 446 PYKEKG 451 (715)
Q Consensus 446 ~AkeK~ 451 (715)
.+.+..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998754
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=7.6e-08 Score=107.72 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
.||||+++ .+.++.++|.++|+.+|+|..+.|+.+ ++||||||||.-.|++++|++..+...+.||.|.|..++.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999987 688999999999999999999999985 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 005083 450 KGKV 453 (715)
Q Consensus 450 K~k~ 453 (715)
|...
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 6543
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.9e-07 Score=97.23 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
.---|||=++ ..+.+|..|+++|++||-|..|+|++| +.||||||+..+.++|.-|+..||+..+.+|.+.|..-
T Consensus 277 ~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3456888776 457899999999999999999999998 89999999999999999999999999999999999876
Q ss_pred ccC
Q 005083 448 KEK 450 (715)
Q Consensus 448 keK 450 (715)
..|
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 544
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.4e-07 Score=103.27 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=69.8
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCC
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~k~ 453 (715)
|||-++ +-.++..+|.+.|+.||+|.+|+|..| -++|| ||.|.++++|++|++.||+..+.|+.|.|..+..+..+
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999987 557899999999999999999999987 78999 99999999999999999999999999999888766543
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=7.7e-08 Score=92.10 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=73.2
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 005083 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I 442 (715)
+.-...-=-|+|+.+. ...+|++|.+.|..||+|..|.+-.| -.||||.|+|.+.+.|++|++.||+..|-|..|
T Consensus 66 PqrSVEGwIi~VtgvH-eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVH-EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEeccC-cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3333444568889875 47899999999999999999999776 678999999999999999999999999999999
Q ss_pred EEEeCccCCC
Q 005083 443 LVKPYKEKGK 452 (715)
Q Consensus 443 ~Vk~AkeK~k 452 (715)
.|.|+--+.+
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999865544
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=1.8e-07 Score=102.58 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=71.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FS-qFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
......|.+||++| +|++.=.+|+++|. +.|+|+.|.+..| |.||||.|+|+++|.+++|+++||.+.++||+|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 44555677999987 68888899999995 6899999999998 9999999999999999999999999999999999
Q ss_pred EEeCc
Q 005083 444 VKPYK 448 (715)
Q Consensus 444 Vk~Ak 448 (715)
||--.
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98543
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.46 E-value=3.7e-07 Score=93.28 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHH----hhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre----~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
..+.||||.++.+ .+..++|++ +|++||+|.+|...+- +.||-|||.|.+.+.|-.|+..|+|-.+.|+.++|.
T Consensus 7 ~pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3445999998865 688888888 9999999999988754 899999999999999999999999999999999999
Q ss_pred eCccCCCCch
Q 005083 446 PYKEKGKVPD 455 (715)
Q Consensus 446 ~AkeK~k~~~ 455 (715)
.|+.+.....
T Consensus 86 yA~s~sdii~ 95 (221)
T KOG4206|consen 86 YAKSDSDIIA 95 (221)
T ss_pred cccCccchhh
Confidence 9988866543
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=3.2e-07 Score=98.88 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=92.7
Q ss_pred chhhhhHhhhhhHHHHHHHH-HHhhhhhhhhcccCCcc--cccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhh
Q 005083 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSRL--ERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYF 395 (715)
Q Consensus 319 k~~~~llq~~~~esQR~~~~-~a~~~gdd~~k~gr~R~--~RsDF~~~g~~gs~~~~sRtIYV~~~~~~~~TEedLre~F 395 (715)
|.|.|+-..-.+.+|-+..+ ++.|||.+..|.||..- .-..-.+| +--..+.=..|||.-+ .-+++|+||+..|
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~--vqeeAk~fnRiYVaSv-HpDLSe~DiKSVF 231 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM--VQEEAKKFNRIYVASV-HPDLSETDIKSVF 231 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHH--HHHHHHhhheEEeeec-CCCccHHHHHHHH
Confidence 44444433334445555444 67899999999986410 00000000 0011233468999876 4589999999999
Q ss_pred hcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 396 SIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 396 SqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
+-||+|+.|.+-++ .+|||||++|.+..+...|+..||-..|.|.-++|....
T Consensus 232 EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 232 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999876 899999999999999999999999999999999997654
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.3e-06 Score=95.79 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCC
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~ 451 (715)
.+||| .++||.+|.+.|+++|+|++|+|.+| .+-|||||.|.++++|++||+.||...|.|++|++-|.....
T Consensus 3 sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 68999999999999999999999887 688999999999999999999999999999999999987654
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-06 Score=94.68 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
+--+-|||--+.+ -++++||.-+|+.||+|..|.|++| .+--||||+|.+.+++++|.-+|++..|+.|+|.|..
T Consensus 237 PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4456788866644 4678999999999999999999998 4445999999999999999999999999999999977
Q ss_pred Ccc
Q 005083 447 YKE 449 (715)
Q Consensus 447 Ake 449 (715)
.+.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 654
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.26 E-value=9.3e-07 Score=88.22 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dV-rIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
.....|+|+++.. .++|..|.+.|+.||.+.+. .|++| .++|||||.|.+.|.+.+|++.||++.+++|+|.|.
T Consensus 94 ~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 4447899999865 99999999999999998774 55554 889999999999999999999999999999999999
Q ss_pred eCccCCCCc
Q 005083 446 PYKEKGKVP 454 (715)
Q Consensus 446 ~AkeK~k~~ 454 (715)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 887665543
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.25 E-value=1.3e-06 Score=92.25 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCC
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK~k~ 453 (715)
-++||++++ ..+++.+|+.+|.+||+|.+|.|++ .||||-.++...++.|+.+|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLP-REATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCC-cccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 368999884 5789999999999999999999986 59999999999999999999999999999999999888543
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=2.7e-06 Score=97.88 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-------ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
|||.++ .|+++.++|..+|.+.|.|.+|+|..- .+.|||||+|.+.++|+.|+..|+++.|+|+.|.|+.+.
T Consensus 518 lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999977 799999999999999999999999762 234999999999999999999999999999999999887
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.19 E-value=2.3e-06 Score=90.36 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
+..+.+|.|+++ ..+++..+||..|.+||+|.+|.|++ +|+||.|+-.++|..|+..|++.+++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 457889999988 56899999999999999999999975 6999999999999999999999999999999999887
Q ss_pred CCCCch
Q 005083 450 KGKVPD 455 (715)
Q Consensus 450 K~k~~~ 455 (715)
|-+..+
T Consensus 150 rlrtap 155 (346)
T KOG0109|consen 150 RLRTAP 155 (346)
T ss_pred ccccCC
Confidence 755443
No 69
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=1e-06 Score=89.99 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=73.9
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
.++....|||||++. ...++||-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+.
T Consensus 3 aaaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 456678899999987 668999999999999999999999875 455 999999999999999999999999999999
Q ss_pred EEeCccCC
Q 005083 444 VKPYKEKG 451 (715)
Q Consensus 444 Vk~AkeK~ 451 (715)
|++.....
T Consensus 81 ~~~r~G~s 88 (267)
T KOG4454|consen 81 RTLRCGNS 88 (267)
T ss_pred cccccCCC
Confidence 98776543
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=4.1e-06 Score=87.75 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=65.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCC-ceEcC--eEEEEE
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP-HFVCD--ARVLVK 445 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg-~~L~G--R~I~Vk 445 (715)
..|++|||-+ ...-.||||+.+|..||+|++|.|.+. .+|||+||+|.+.-+|+.||..|++ ..+-| ..+.||
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4567777755 456789999999999999999999884 8999999999999999999999876 34444 457788
Q ss_pred eCccCCC
Q 005083 446 PYKEKGK 452 (715)
Q Consensus 446 ~AkeK~k 452 (715)
.+...++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 8754443
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=4.2e-06 Score=94.29 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=69.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..|.++|..+ ..++...||+++|++||+|+-.+|+.. --|.|||||+.+.++|.++|+.|+.+.|.||.|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4578999987 456778999999999999999999986 56789999999999999999999999999999999877
Q ss_pred cc
Q 005083 448 KE 449 (715)
Q Consensus 448 ke 449 (715)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 63
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=2.8e-06 Score=88.94 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=70.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
.-..|||-.+ .-.+.+.+|-.+|-.||.|++.+|-.| ++|.||||.|+++.+++.||..||+-.|.-++++|...
T Consensus 284 eGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 284 EGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3456777666 457899999999999999999999776 89999999999999999999999999999999999877
Q ss_pred ccCCC
Q 005083 448 KEKGK 452 (715)
Q Consensus 448 keK~k 452 (715)
++|..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 66654
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=2.7e-06 Score=97.92 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
-.+|.|.++ +|..+-.+|+++|+.||.|.+||||.- -+||||||+|.++.+|.+|++.|..+-|.||++...|+.
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 458999987 688999999999999999999999972 679999999999999999999999999999999999998
Q ss_pred cCCC
Q 005083 449 EKGK 452 (715)
Q Consensus 449 eK~k 452 (715)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7655
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.04 E-value=9.3e-06 Score=82.44 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=65.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcC-CCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqF-G~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
.-+||..+ ..-+-|..+..||.+| |.|..+|+-+. .+||||||+|+++|.|+-|-+.||+..|.|+.+.|..-.
T Consensus 50 g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 34677766 4567889999999999 78888888664 899999999999999999999999999999999998765
Q ss_pred cC
Q 005083 449 EK 450 (715)
Q Consensus 449 eK 450 (715)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.88 E-value=1.9e-05 Score=87.98 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~----DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
.+|||.++ +.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+++++.|+--+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45999987 56889999999999999999999865 34559999999999999999999 89999999999975443
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.71 E-value=0.0001 Score=77.02 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
.......+|||.++ ++.++++||+++|.+||+++.|-|-+| ++.|.|=|+|...++|..|++.+++.-++|+++.+
T Consensus 78 ~~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 34566689999987 789999999999999999999999887 78899999999999999999999999999999988
Q ss_pred EeCc
Q 005083 445 KPYK 448 (715)
Q Consensus 445 k~Ak 448 (715)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6543
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=2.9e-05 Score=79.73 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK 450 (715)
..+||+.+ .+...+.||..+|..||.|.+|.+ +.|||||.|.+..+|..|+..+|+.+|+|-++.|.++..+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 36899976 689999999999999999999988 5589999999999999999999999999999777777643
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.69 E-value=4.8e-05 Score=78.93 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
...+.+||+++ ++.+|-+.+..+|+-||.|..|.|++| ..|||+||+|.+.+.++.++. ||+..|.|+.|.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45688999987 666666669999999999999999987 678999999999999999999 799999999999987
Q ss_pred CccC
Q 005083 447 YKEK 450 (715)
Q Consensus 447 AkeK 450 (715)
..-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6554
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.69 E-value=7e-05 Score=82.81 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=67.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
.+.+...||+|.++ ++++|=..|++-|.+||.|..+.|+.. ++|| .|.|.++++|++|+..||+..|+||.|.|..
T Consensus 531 gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 531 GAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34566778999987 689999999999999999999999653 7776 9999999999999999999999999999975
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.69 E-value=3.1e-05 Score=80.86 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
-.||.+-+ .-+++++.|.+.|.+|=.-...+|++| +++|||||.|.+..++..|+..||+..++.|.|+......
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 46777633 335899999999999999999999997 9999999999999999999999999999999999977766
Q ss_pred CCCCchHHHH
Q 005083 450 KGKVPDKYRK 459 (715)
Q Consensus 450 K~k~~~~~rk 459 (715)
|.++.+..++
T Consensus 270 keRn~dvv~k 279 (290)
T KOG0226|consen 270 KERNLDVVKK 279 (290)
T ss_pred HhhhhHHHhH
Confidence 6655554443
No 81
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.57 E-value=8.2e-05 Score=82.99 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 005083 363 NGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 363 ~g~~gs~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I 442 (715)
.+..|.+....+.+-+.-.+-.--+-++|..+|.+||+|+.|.|-+ +---|.|||.+..+|-.|... .+..|+||.|
T Consensus 362 ~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~i 438 (526)
T KOG2135|consen 362 RGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFI 438 (526)
T ss_pred CCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCcee
Confidence 3434566777777777655444456799999999999999999966 333599999999999888877 8999999999
Q ss_pred EEEeCccCC
Q 005083 443 LVKPYKEKG 451 (715)
Q Consensus 443 ~Vk~AkeK~ 451 (715)
+|.|..+-.
T Consensus 439 Kl~whnps~ 447 (526)
T KOG2135|consen 439 KLFWHNPSP 447 (526)
T ss_pred EEEEecCCc
Confidence 999987643
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.51 E-value=0.0002 Score=83.04 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec-------cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~-------DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I 442 (715)
++....+||+++. -.++|+.|-..|+.||+|..|+|+. ++-|-||||.|-+..++++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nln-psv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLN-PSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCC-ccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 6788999999885 4799999999999999999999976 2778899999999999999999999999999999
Q ss_pred EEEeCcc
Q 005083 443 LVKPYKE 449 (715)
Q Consensus 443 ~Vk~Ake 449 (715)
+..|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9998854
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00011 Score=83.14 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 005083 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (715)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~ 443 (715)
.+-..++|+|.++ +.++++++|+++|+.||+|..|+.-. .++|..||+|-|..+|++|++.+++..|.|++|+
T Consensus 71 ~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3667899999987 56899999999999999999988744 3899999999999999999999999999999998
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.30 E-value=0.0001 Score=83.42 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=66.6
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
--||+++-.++ -+.++.||.++|+.+|+|.+|+|+.| +++|.|||+|.+.+.+..|+.. .|+-+-|.+|.|+..
T Consensus 178 d~Rtvf~~qla-~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQLA-RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHHHh-hcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEeccc
Confidence 34666666554 57889999999999999999999998 8999999999999999999965 999999999999976
Q ss_pred cc
Q 005083 448 KE 449 (715)
Q Consensus 448 ke 449 (715)
..
T Consensus 256 Ea 257 (549)
T KOG0147|consen 256 EA 257 (549)
T ss_pred HH
Confidence 53
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.24 E-value=0.00083 Score=74.17 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
+..|.|.++.+..+|.+.|..+|+-||.|.+|.|.+. ++--|.|.|.+...|+.|++.|+++.|.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 7789999999999999999999999999999999985 447899999999999999999999999999999987653
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.08 E-value=0.00012 Score=52.00 Aligned_cols=23 Identities=48% Similarity=1.128 Sum_probs=17.5
Q ss_pred Ccccccccc-cccCCCCCCcccCC
Q 005083 231 WRPCLYFAR-GYCKNGSSCRFVHG 253 (715)
Q Consensus 231 ~kpC~YFar-G~CK~GssCrf~HG 253 (715)
-++|.+|.+ |.|++|.+|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 578987777 99999999999997
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.03 E-value=0.0017 Score=73.13 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~AkeK 450 (715)
.|-+..+ +|.+|++||.++|+.+ .|+.+.+++. |..|=|||+|.++|++++|+++ +...+..|-|.|..+..+
T Consensus 12 ~vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 12 EVRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred EEEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 3444454 7999999999999999 6888888875 8999999999999999999999 999999999999877544
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.88 E-value=0.0075 Score=65.72 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEE--------Eeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dV--------rIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~ 438 (715)
...+..|||.+++ -++|-+++.++|++||-|..= .+-++ +-||=|.++|...|+|+.|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456669999885 578999999999999988643 33333 88999999999999999999999999999
Q ss_pred CeEEEEEeCc
Q 005083 439 DARVLVKPYK 448 (715)
Q Consensus 439 GR~I~Vk~Ak 448 (715)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998876
No 89
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.68 E-value=0.0038 Score=50.89 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHH
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~AL 429 (715)
+.|-|.+-... ..+.|..+|.+||+|+++++.. .+-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 56667543221 3477888999999999999984 5679999999999999985
No 90
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.57 E-value=0.0012 Score=45.58 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.4
Q ss_pred cccccccccccCCCCCCcccCC
Q 005083 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~HG 253 (715)
.+|.+|.+|.|+.|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899889999999999999996
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.33 E-value=0.0073 Score=65.63 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCCcceEEEcCCCCCCCCHH---HH--HHhhhcCCCeEEEEeecc-----CCCc-e-EEEEECCHHHHHHHHHhCCCceE
Q 005083 370 NPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEe---dL--re~FSqFG~V~dVrIp~D-----ksRG-F-GFVTF~~~EsAe~ALe~mNg~~L 437 (715)
.....-+||.++..--..|+ .| .+||++||.|..|.|-+. .--+ + -||||...|+|.+++...++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 45677899998877666666 34 489999999999988552 1112 2 29999999999999999999999
Q ss_pred cCeEEEEEeCc
Q 005083 438 CDARVLVKPYK 448 (715)
Q Consensus 438 ~GR~I~Vk~Ak 448 (715)
+||.|+...-.
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999886543
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.33 E-value=0.016 Score=65.46 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~d-VrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..-.|-+..+ +|.++|+||.++|+-.=.|.+ |-++.| ++-|=|||.|++.|.|++||.. +...|..|-|+|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3445556665 799999999999998755555 334555 8889999999999999999999 999999999999765
Q ss_pred c
Q 005083 448 K 448 (715)
Q Consensus 448 k 448 (715)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.24 E-value=0.003 Score=65.26 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
.+...|.|..+ ...+...+|.++|++||++..+.+ .++++||.|...+++.+|++.+++..+.++.|.|.
T Consensus 97 ~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 97 RTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 34445556544 446777999999999999965555 57899999999999999999999999999999993
No 94
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.12 E-value=0.024 Score=61.98 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=67.6
Q ss_pred CCCCCCcceEEEcCCC---CCCCC-------HHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCce
Q 005083 367 GIVNPASRQIYLTFPA---DSTFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 367 gs~~~~sRtIYV~~~~---~~~~T-------EedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~ 436 (715)
++-.+..+|+.+.++- ++..+ +++|++--++||.|.+|.|---...|.+-|+|.+.+.|..++..|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3455777888887652 22333 4566666889999999966433678999999999999999999999999
Q ss_pred EcCeEEEEEeCccCCC
Q 005083 437 VCDARVLVKPYKEKGK 452 (715)
Q Consensus 437 L~GR~I~Vk~AkeK~k 452 (715)
++||.|....+-.+.+
T Consensus 339 fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKTK 354 (382)
T ss_pred ecceEEEEEEeCCcce
Confidence 9999999988766543
No 95
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.09 E-value=0.022 Score=52.46 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=47.7
Q ss_pred cCCCCCCCCHHHHHHhhhcCCCeEEEE-------------eeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE-E
Q 005083 379 TFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL-V 444 (715)
Q Consensus 379 ~~~~~~~~TEedLre~FSqFG~V~dVr-------------Ip~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~-V 444 (715)
||+.. ....|-++|++||+|.+.. ++. ...+--|+|.++.+|.+||.+ ||..|.|..+- |
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 55533 4577889999999999886 443 677999999999999999999 99999996554 5
Q ss_pred EeCc
Q 005083 445 KPYK 448 (715)
Q Consensus 445 k~Ak 448 (715)
++.+
T Consensus 87 ~~~~ 90 (100)
T PF05172_consen 87 KPCD 90 (100)
T ss_dssp EE-H
T ss_pred EEcH
Confidence 6653
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.05 E-value=0.022 Score=59.36 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec-cC----CCceEEEEECCHHHHHHHHHhCCCceE---cCeEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-QQ----KRMFGFVTFVYPETVKIILAKGNPHFV---CDARV 442 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~-Dk----sRGFGFVTF~~~EsAe~ALe~mNg~~L---~GR~I 442 (715)
.+-||+||.+++ -++...+|..+|..|---+.+.|-+ ++ .+-+|||||.+...|..|+..|||..+ .+..+
T Consensus 32 ~~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 346999999884 5788999999999997777776644 22 236999999999999999999999998 47888
Q ss_pred EEEeCccCCCCc
Q 005083 443 LVKPYKEKGKVP 454 (715)
Q Consensus 443 ~Vk~AkeK~k~~ 454 (715)
++..++...|+.
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 888887665543
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.96 E-value=0.033 Score=51.04 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=59.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhc--CCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEE
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSq--FG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~----GR~I~ 443 (715)
.||-|.+| +-+.|.++|.+++.+ .|...-+.+|.| -+.|||||-|.+.+.|.+-.+.++++.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 57888877 467888888887765 477788888888 66899999999999999999999888775 45566
Q ss_pred EEeCc
Q 005083 444 VKPYK 448 (715)
Q Consensus 444 Vk~Ak 448 (715)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.89 E-value=0.0098 Score=69.42 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEE-EEe---eccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~d-VrI---p~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
.+-.-|||..+ ...+++.++-++|..--.|++ |.| ++|+.++-|||.|..++.+.+|+..-..+.+..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45568999877 567888999999999888988 666 4469999999999998888888877688999999999987
Q ss_pred CccCCC
Q 005083 447 YKEKGK 452 (715)
Q Consensus 447 AkeK~k 452 (715)
-.++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 665544
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.87 E-value=0.0054 Score=65.66 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=69.8
Q ss_pred CCcceEE-EcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 371 PASRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 371 ~~sRtIY-V~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
-.+.+|| |+. .++.+++++|..+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+.+.
T Consensus 182 ~~s~~~~~~~~-~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVGE-LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeecc-cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3456788 554 4889999999999999999999999875 8899999999999999999987 8899999999998
Q ss_pred eCccCCC
Q 005083 446 PYKEKGK 452 (715)
Q Consensus 446 ~AkeK~k 452 (715)
...++.+
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 7776654
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.61 E-value=0.028 Score=64.34 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=53.0
Q ss_pred HHHHHhhhcCCCeEEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 389 edLre~FSqFG~V~dVrIp~D-------ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
|+|+.-+++||.|..|.|+++ -.-|--||+|.+.+++++|++.|+|..++||.|....|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566667889999999999874 3446679999999999999999999999999999887754
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.56 E-value=0.07 Score=58.99 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
...--+.|-.+...+.+-+.|-++|..||.|++|+.++ .+.|-|.|+..+...+++|+..||+..+-|.+|.|+..+.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 33445667678788889999999999999999999988 3678999999999999999999999999999999998653
No 102
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.51 E-value=0.013 Score=50.96 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005083 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (715)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999988 46678888887765 5667777777543
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.15 E-value=0.016 Score=66.19 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk 445 (715)
.-.-.+|||+++ ...+++..+++....||++...+++.| .++||+|.+|.+......|++.+|+..+.++++.|.
T Consensus 286 ~~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 286 PDSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred ccccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 345578999988 457999999999999999999999886 789999999999999999999999999999999999
Q ss_pred eCccCCC
Q 005083 446 PYKEKGK 452 (715)
Q Consensus 446 ~AkeK~k 452 (715)
.+.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 8875543
No 104
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.10 E-value=0.023 Score=48.56 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=37.3
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005083 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (715)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (715)
.-+|.+|++++|+.|.||-|+||= .+..|++.|=-.+ .+|..-|..|-.-
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~v 60 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEV 60 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 357999999999999999999884 5567888875544 4555556655443
No 105
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.07 E-value=0.07 Score=48.24 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCCH----HHHHHhhhcC-CCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 005083 375 QIYLTFPADSTFRE----EDVSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (715)
Q Consensus 375 tIYV~~~~~~~~TE----edLre~FSqF-G~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ake 449 (715)
.+||.+++.. .+- ..|++++.-+ |+|.+| ..+-|+|.|.+.+.|++|++.|++..+-|++|.|.....
T Consensus 4 ~L~V~NLP~~-~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPTN-KDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--TT-S-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred EEEEecCCCC-CCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5888888653 343 4456666666 588877 568999999999999999999999999999999997744
Q ss_pred C
Q 005083 450 K 450 (715)
Q Consensus 450 K 450 (715)
.
T Consensus 77 ~ 77 (90)
T PF11608_consen 77 N 77 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.91 E-value=0.035 Score=51.26 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=34.5
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 005083 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 376 IYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mN 433 (715)
|.+.++ ...++.++|++.|++||+|..|.+.. .---|||-|.+.+.|+.|++++.
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 344443 44577999999999999999998877 44479999999999999998764
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.071 Score=60.84 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc-------CCCc---eEEEEECCHHHHHHHHHhCCCceEc
Q 005083 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRM---FGFVTFVYPETVKIILAKGNPHFVC 438 (715)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D-------ksRG---FGFVTF~~~EsAe~ALe~mNg~~L~ 438 (715)
..+-+|+|+||++ +|+++|+.|...|..||.| .|..+.. -.+| |.|+.|+++..|+..+.. ...+
T Consensus 255 ~~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGL-PWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEG 329 (520)
T ss_pred ccccccceeecCC-CccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhc
Confidence 3467899999988 7899999999999999996 4666621 5667 999999999999988866 3335
Q ss_pred CeEEEEEeCccCC
Q 005083 439 DARVLVKPYKEKG 451 (715)
Q Consensus 439 GR~I~Vk~AkeK~ 451 (715)
......+...++-
T Consensus 330 ~~~~yf~vss~~~ 342 (520)
T KOG0129|consen 330 EGNYYFKVSSPTI 342 (520)
T ss_pred ccceEEEEecCcc
Confidence 5555555554443
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.72 E-value=0.018 Score=64.36 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhCC
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~------D-----------ksRGFGFVTF~~~EsAe~ALe~mN 433 (715)
-.+|+|++.+++..... +.|.++|+.+|.|..|||.. | ..+-+|+|+|...+.|.+|.+.||
T Consensus 229 l~srtivaenLP~Dh~~-enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSY-ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHH-HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 36899999998765444 88999999999999999965 1 236689999999999999999976
Q ss_pred CceEcCeEEEEE
Q 005083 434 PHFVCDARVLVK 445 (715)
Q Consensus 434 g~~L~GR~I~Vk 445 (715)
...-.-.-++|+
T Consensus 308 ~e~~wr~glkvk 319 (484)
T KOG1855|consen 308 PEQNWRMGLKVK 319 (484)
T ss_pred hhhhhhhcchhh
Confidence 544333334443
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.036 Score=63.74 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=48.9
Q ss_pred HHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEE
Q 005083 389 EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVK 445 (715)
Q Consensus 389 edLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~-GR~I~Vk 445 (715)
.-|.++|+++|+|+.+.+|.+ ..+||.|++|.+..+|+.|++.+||+.|+ +.+..|.
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 456788999999999999976 88999999999999999999999998875 4445554
No 110
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.65 E-value=0.019 Score=37.99 Aligned_cols=19 Identities=42% Similarity=1.085 Sum_probs=16.9
Q ss_pred ccccccccccCCCCCCcccCC
Q 005083 233 PCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 233 pC~YFarG~CK~GssCrf~HG 253 (715)
+|+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998876 999999999993
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.16 E-value=0.16 Score=49.87 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=53.3
Q ss_pred CCcceEEEcCCC-----CCCCCH---HHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 005083 371 PASRQIYLTFPA-----DSTFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (715)
Q Consensus 371 ~~sRtIYV~~~~-----~~~~TE---edLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I 442 (715)
+-.-||.|.-.. ...+.+ .+|-+.|.+||+|.=||++. +-=+|||.+-+.|-+|++. ++..|+|+.|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~l 99 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRTL 99 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEEE
Confidence 566678776332 123443 25667799999999999976 4689999999999999998 9999999999
Q ss_pred EEEeCc
Q 005083 443 LVKPYK 448 (715)
Q Consensus 443 ~Vk~Ak 448 (715)
+|+.-.
T Consensus 100 ~i~LKt 105 (146)
T PF08952_consen 100 KIRLKT 105 (146)
T ss_dssp EEEE--
T ss_pred EEEeCC
Confidence 998644
No 112
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.05 E-value=0.061 Score=58.99 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEE--------Eeecc----CCCceEEEEECCHHHHHHHHHhCCCce
Q 005083 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHF 436 (715)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dV--------rIp~D----ksRGFGFVTF~~~EsAe~ALe~mNg~~ 436 (715)
-...+-+|||-.+.+ .+++++|.++|.++|.|..= .|-+| +.||=|-|+|+++-.|+.|+...++..
T Consensus 62 ~~s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred cccccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 367778999987754 68999999999999988543 23223 889999999999999999999999999
Q ss_pred EcCeEEEEEeCccCCCC
Q 005083 437 VCDARVLVKPYKEKGKV 453 (715)
Q Consensus 437 L~GR~I~Vk~AkeK~k~ 453 (715)
++|..|+|..+..+..+
T Consensus 141 f~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTGV 157 (351)
T ss_pred ccCCCchhhhhhhccCc
Confidence 99999999988877653
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.79 E-value=0.17 Score=57.94 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=67.3
Q ss_pred cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeEEEEeecc----CCCceEEEEECCHHHHHHHHHhC
Q 005083 358 NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG 432 (715)
Q Consensus 358 sDF~~~g~~gs~~~~sRtIYV~~~~~~~~TEedLre~FS-qFG~V~dVrIp~D----ksRGFGFVTF~~~EsAe~ALe~m 432 (715)
+||... ......-.||||||.++ --++.++|..+|. -||-|.-|-|=.| ..||-|=|||.+...--+||++
T Consensus 357 s~fv~d--~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa- 432 (520)
T KOG0129|consen 357 SDFVLD--HNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA- 432 (520)
T ss_pred chhhhc--cCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-
Confidence 455544 22334567999999884 5689999999999 7999999999776 6899999999999999999987
Q ss_pred CCceE----cCeEEEEEeCc
Q 005083 433 NPHFV----CDARVLVKPYK 448 (715)
Q Consensus 433 Ng~~L----~GR~I~Vk~Ak 448 (715)
.-..| -.++|.||+|.
T Consensus 433 rFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 433 RFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred heEEEeccccceeeeeccee
Confidence 32222 23577788776
No 114
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=93.63 E-value=0.026 Score=62.69 Aligned_cols=26 Identities=42% Similarity=1.115 Sum_probs=24.2
Q ss_pred CCcccccccccccCCCCCCcccCCCC
Q 005083 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~HG~~ 255 (715)
..|||.||-.|-|+.|.+|||.||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 58999999999999999999999963
No 115
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.56 E-value=0.035 Score=59.57 Aligned_cols=28 Identities=43% Similarity=0.931 Sum_probs=25.1
Q ss_pred CCCCCcccccccc-cccCCCCCCcccCCC
Q 005083 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGG 254 (715)
Q Consensus 227 ~~~g~kpC~YFar-G~CK~GssCrf~HG~ 254 (715)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4567899999998 999999999999994
No 116
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.24 E-value=0.035 Score=58.58 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.7
Q ss_pred HHHHHhhh-cCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 389 edLre~FS-qFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
|||...|+ +||+|+++.|... .-+|=.+|.|...|+|++|++.||+.++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55555566 9999999987653 67889999999999999999999999999999988654
No 117
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=92.32 E-value=0.46 Score=49.53 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEeC
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~-GR~I~Vk~A 447 (715)
.+.+..+++++++ ..++.+.+..+|.+|.--.+||++.. .++.|||+|.+...+..|...+.+-.|- ...+.|..+
T Consensus 143 ~ppn~ilf~~niP-~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIP-SESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCC-cchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 5677888888875 46788999999999999999998763 5689999999999999999887776664 666666654
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=91.06 E-value=0.13 Score=54.62 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=55.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCceE
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-------FGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~-D--------ksRG-------FGFVTF~~~EsAe~ALe~mNg~~L 437 (715)
--||+.+|+. .+...-||++|++||+|-.|.+-. + +.+| =|+|+|.+...|+++.+.||+..|
T Consensus 75 GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699998865 588999999999999999999854 2 1111 289999999999999999999999
Q ss_pred cCeE
Q 005083 438 CDAR 441 (715)
Q Consensus 438 ~GR~ 441 (715)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9973
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=89.29 E-value=0.42 Score=50.15 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 005083 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (715)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L 437 (715)
+..++-.|+||.++ .-+++|++|+.+|+.|--...++|-....-..|||.|++.+.|..|+..|.|-.|
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44566678999877 5589999999999999776666664311233788888888888888777555433
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.03 E-value=0.9 Score=49.31 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCCeEEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 388 EedLre~FSqFG~V~dVrIp~D-----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
|+++.+-..+||.|..|-|-.+ .-----||+|...++|-+|+-.|||.++.||.|...+|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567777899999999977432 112237999999999999999999999999999988774
No 121
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.88 E-value=1.1 Score=45.50 Aligned_cols=62 Identities=16% Similarity=0.025 Sum_probs=47.6
Q ss_pred CHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEEeCccC
Q 005083 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKEK 450 (715)
Q Consensus 387 TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mN--g~~L~GR~I~Vk~AkeK 450 (715)
..+.|+++|..|+++....+.+ +-+=-.|.|.+.+.|.+|...++ +..+.|..++|..+..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999998877 55568999999999999999999 89999999999887543
No 122
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.86 E-value=1.6 Score=37.29 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=44.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcC---CCeEEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqF---G~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~m 432 (715)
..+|+|.++ .+++.+||..||..| .....|..+-|.+ +=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 357888876 458899999999999 2346888887754 788999999999999764
No 123
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=88.63 E-value=1.4 Score=49.20 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=60.1
Q ss_pred cceEEEc-CCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe--EEEEEeCcc
Q 005083 373 SRQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA--RVLVKPYKE 449 (715)
Q Consensus 373 sRtIYV~-~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR--~I~Vk~Ake 449 (715)
++-|.++ .++-+.+|-+.|..+-...|+|.+|.|.+ |.---|.|+|++.+.|++|.+.||+..|.-- .++|..+++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3444444 34567899999999999999999999887 2344699999999999999999999888654 445555554
Q ss_pred C
Q 005083 450 K 450 (715)
Q Consensus 450 K 450 (715)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 3
No 124
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.35 E-value=1.5 Score=43.45 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=55.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHH---HhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 370 NPASRQIYLTFPADSTFREEDVS---NYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLr---e~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
++--.||+|..+.-.--..||++ ...+.||+|++|.+. .|--|.|+|.+..+|=+|+.+... ..-|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34556899987644333445555 447889999999886 355799999999999999998544 66778888877
Q ss_pred C
Q 005083 447 Y 447 (715)
Q Consensus 447 A 447 (715)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 125
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.24 E-value=0.67 Score=51.18 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=55.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCC--eEEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGP--VQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~--V~dVrIp~----DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
-+|||++. |-+|++||-+....-|- +.+++... +++||||.|...+...+++.++.|....|.|..-.|-.+.
T Consensus 82 ~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 57999885 66677777776665553 33333322 3899999999999999999999999999999887776553
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.43 E-value=0.27 Score=53.75 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=61.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHH--HhhhcCCCeEEEEeeccC-------CCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 005083 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ-------KRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLr--e~FSqFG~V~dVrIp~Dk-------sRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~ 441 (715)
..++.+||..+..--..|..|+ +||.+||.|..|.+-.+. .-.=++|||...|+|..+|...++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4556677776655556677776 799999999999886642 1123899999999999999999999999998
Q ss_pred EEEEeCccC
Q 005083 442 VLVKPYKEK 450 (715)
Q Consensus 442 I~Vk~AkeK 450 (715)
++......+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 665544433
No 127
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.43 E-value=1.1 Score=48.85 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=50.5
Q ss_pred CHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE-EEEEeCccC
Q 005083 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEK 450 (715)
Q Consensus 387 TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~-I~Vk~AkeK 450 (715)
.-..|-.+|++||+|+++.... .-.|=+|.|.+.-+|++||.+ |+.+|+|.. |-|++...|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 3466778999999999997774 677999999999999999999 999999865 456665544
No 128
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=0.28 Score=54.19 Aligned_cols=22 Identities=41% Similarity=1.020 Sum_probs=21.4
Q ss_pred cccccccccccCCCCCCcccCC
Q 005083 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~HG 253 (715)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999997
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.78 E-value=3 Score=37.87 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mN 433 (715)
....-.||+|+.+| ...||.++|+.||.| .|..+.| .-|||...+.+.|..|+..++
T Consensus 7 ~RdHVFhltFPkeW--K~~DI~qlFspfG~I-~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEW--KTSDIYQLFSPFGQI-YVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT----HHHHHHHCCCCCCE-EEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHh--hhhhHHHHhccCCcE-EEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 34456899999888 468999999999997 4555544 359999999999999988754
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=84.18 E-value=1.6 Score=49.06 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=59.6
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec---c----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 375 tIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~---D----ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
-|-|++| +..++.++++.+|.-.|+|.+++|.- | ...-.+||.|.+..+|..|.-. ..+.+-++.|.|.+|
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 7888877 45789999999999999999999843 2 3344899999999999988765 667777788888877
Q ss_pred ccC
Q 005083 448 KEK 450 (715)
Q Consensus 448 keK 450 (715)
-.-
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 654
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=83.08 E-value=3.4 Score=49.35 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHHHhhhcCCCe-EEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 381 PADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 381 ~~~~~~TEedLre~FSqFG~V-~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
.-.++++=+||-++|+.|-.+ -+|++-+. +.-|=+-|.|++.++|.+|...++++.|.+|.|.+..
T Consensus 874 n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 874 NFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 447899999999999999766 45555542 7789999999999999999999999999999998863
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=81.26 E-value=3 Score=47.27 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEEeCccCCC
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg-~~L~GR~I~Vk~AkeK~k 452 (715)
.++|++|+. ...+..||+.+|..----..=.++ -+.||+||.+.+..-+.+|++.+++ ..+.|+++.|....+|+.
T Consensus 2 nklyignL~-p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLS-PQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccC-CCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999884 468999999999864111111112 2679999999999999999999876 678999999987766643
No 133
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=81.23 E-value=4 Score=46.24 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEEeCc
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR-~I~Vk~Ak 448 (715)
+-+.||-+.++ +..++||+|++.|.+-|-+++...-..+.|-++.+.+.+.|+|-.|+-.|+.|.+.+. -++|...+
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 55556767766 4579999999999999998888776666777999999999999999999999999776 78887654
No 134
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.60 E-value=2.3 Score=46.04 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred CcceEEEcCCC-CC----------CCCHHHHHHhhhcCCCeEEEEeec
Q 005083 372 ASRQIYLTFPA-DS----------TFREEDVSNYFSIYGPVQDVRIPY 408 (715)
Q Consensus 372 ~sRtIYV~~~~-~~----------~~TEedLre~FSqFG~V~dVrIp~ 408 (715)
...|||+..++ -| --+|+.|+..|..||+|..|.||.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34588887664 22 246788999999999999999864
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=77.68 E-value=2.6 Score=51.48 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeC
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPY 447 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~G--R~I~Vk~A 447 (715)
..-++.++|+.+..| .....|...|..||.|..|.+-. ..-|++|.|.+...++.|+..|.+.-|.| +++.|..+
T Consensus 452 st~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 345678899999888 46778889999999999987744 55699999999999999999998888865 77899888
Q ss_pred ccCCCCc
Q 005083 448 KEKGKVP 454 (715)
Q Consensus 448 keK~k~~ 454 (715)
.+-...+
T Consensus 529 ~~~~~~P 535 (975)
T KOG0112|consen 529 SPPGATP 535 (975)
T ss_pred cCCCCCh
Confidence 7765544
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.37 E-value=1.5 Score=53.16 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=64.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 005083 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (715)
Q Consensus 373 sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~Ak 448 (715)
+..++|.++ ++..|.+.++.+++++|.|.+++++.- +.+|.+||.|.++.++.+++..+....+.-+.+.|....
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 556777765 688999999999999999999998763 889999999999999999999988888877777776543
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.33 E-value=0.46 Score=57.19 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEee----ccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP----YQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp----~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
+..-++||.++ +....+++|+..|+.+|.|+.|+|. .++-||+|+|.|..++.+.+|+.....+.+.-..|-|
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 55567888866 5688999999999999999999886 2488999999999999999999985556555333333
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=75.05 E-value=2.4 Score=47.50 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=55.7
Q ss_pred CCCcceEEEc-CCCCCCCCHHHHHHhhhc----CCCeEEEEeec--c-CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 005083 370 NPASRQIYLT-FPADSTFREEDVSNYFSI----YGPVQDVRIPY--Q-QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (715)
Q Consensus 370 ~~~sRtIYV~-~~~~~~~TEedLre~FSq----FG~V~dVrIp~--D-ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~ 441 (715)
.+...++.|. .-..|+.++.||.++|.+ -|-++.|-.++ | |.-|=|||.|..+++|++||.+ +...|.-|-
T Consensus 156 lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 156 LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 3334455553 234799999999999963 23445555444 3 8889999999999999999999 878777776
Q ss_pred EEEEe
Q 005083 442 VLVKP 446 (715)
Q Consensus 442 I~Vk~ 446 (715)
|.+.+
T Consensus 235 IElFR 239 (508)
T KOG1365|consen 235 IELFR 239 (508)
T ss_pred HHHHH
Confidence 66543
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=71.12 E-value=12 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCCCHHHHHHhhhcCCC-----eEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 384 STFREEDVSNYFSIYGP-----VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 384 ~~~TEedLre~FSqFG~-----V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
..++..+|-.++..-+. |-+|+| ..-|.||+-.. +.++.+++.|++..+.|++|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887754 446666 34599998754 4688999999999999999999865
No 140
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=69.60 E-value=14 Score=38.28 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE--cCeEEEEEeC
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPY 447 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L--~GR~I~Vk~A 447 (715)
++--.+.|..++. .-+=+||+++..+-|.|.-..|-+ -|+|.|+|...|+.+-|+.+|..+.+ .|-...+...
T Consensus 113 rSe~RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 113 RSEYRVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ccceeEEEecCCC-CCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 3344667766643 456699999999999998888865 47999999999999999999876555 4555544443
No 141
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=68.75 E-value=4.3 Score=43.53 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCC----CceEcCeEEEEEe
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mN----g~~L~GR~I~Vk~ 446 (715)
..|||.++.. .++.+.+++-|+.||+|+...++.| +.-+=++|.|...-.+.+|+...+ +-...++++.|.+
T Consensus 32 a~l~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 7899998854 5778889999999999998877665 777889999999999999988753 2455778887755
Q ss_pred Cc
Q 005083 447 YK 448 (715)
Q Consensus 447 Ak 448 (715)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=68.67 E-value=1.2 Score=54.23 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
..++||++++++ +.++++.+++..|..+|.|.+|.|-.- +---||||.|.+.+.+-.|+-.+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 577899999987 678999999999999999999998442 2334999999999999999888777766555555544
Q ss_pred C
Q 005083 447 Y 447 (715)
Q Consensus 447 A 447 (715)
-
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 3
No 143
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=66.93 E-value=2 Score=47.24 Aligned_cols=23 Identities=35% Similarity=0.840 Sum_probs=21.0
Q ss_pred CcccccccccccCCCCC-CcccCC
Q 005083 231 WRPCLYFARGYCKNGSS-CRFVHG 253 (715)
Q Consensus 231 ~kpC~YFarG~CK~Gss-Crf~HG 253 (715)
.-.|+=|.||.|++|.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 35899999999999988 999995
No 144
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=65.54 E-value=2.3 Score=46.23 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=20.6
Q ss_pred cccccccccccCCCCCCcccCC
Q 005083 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~HG 253 (715)
-.|-||-.|.|..|..|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 3699999999999999999998
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=65.52 E-value=5.7 Score=44.73 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeEE---EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqFG~V~d---VrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~A 447 (715)
.-|-+.++ .|..+.|||-.+|..|-.-++ |.|+.. +.-|=|||.|.+.|.|..|..+-.++.+..|-|.|...
T Consensus 281 dcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 34555555 688999999999999864332 566553 88899999999999999999887778888999999876
Q ss_pred c
Q 005083 448 K 448 (715)
Q Consensus 448 k 448 (715)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 146
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=65.42 E-value=6 Score=46.64 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=63.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE---cCeE
Q 005083 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (715)
Q Consensus 366 ~gs~~~~sRtIYV~~~~~~~~TEedLre~FS-qFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L---~GR~ 441 (715)
.++-.+.++-|||.++. --||...|+.+.. ..|.|++..| |+-|--+||+|.+.++|-....+|++..+ +++.
T Consensus 437 SPsR~~~SnvlhI~nLv-RPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLV-RPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeeccc-ccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 45566788899999774 4689999999999 6788888844 44556799999999999999999988665 6677
Q ss_pred EEEEeCc
Q 005083 442 VLVKPYK 448 (715)
Q Consensus 442 I~Vk~Ak 448 (715)
|.|.+..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7776554
No 147
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=65.14 E-value=3.2 Score=45.04 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.7
Q ss_pred Ccccccc-cccccCCCCCCcccCCC
Q 005083 231 WRPCLYF-ARGYCKNGSSCRFVHGG 254 (715)
Q Consensus 231 ~kpC~YF-arG~CK~GssCrf~HG~ 254 (715)
.-||+|| .+|.|..|..|.|.|.+
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 3489999 99999999999999985
No 148
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=60.91 E-value=45 Score=31.44 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=50.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcC-CCeEEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 005083 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 374 RtIYV~~~~~~~~TEedLre~FSqF-G~V~dVrIp~D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~G 439 (715)
.++-+-..+.+-++-++|..+.+.+ ..|+.+||++| ..|=...++|.+.+.|+.-....||..++-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444556777778887776666 46678899998 566688999999999999999999876643
No 149
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=57.54 E-value=6.4 Score=43.52 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCCCCCcccCC
Q 005083 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 228 ~~g~kpC~YFarG~CK~GssCrf~HG 253 (715)
..+-..|+||-+|.||+|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 46788999999999999999999995
No 150
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=55.21 E-value=5 Score=42.18 Aligned_cols=21 Identities=52% Similarity=1.130 Sum_probs=18.3
Q ss_pred cccc-ccccccCCCCCCcccCC
Q 005083 233 PCLY-FARGYCKNGSSCRFVHG 253 (715)
Q Consensus 233 pC~Y-FarG~CK~GssCrf~HG 253 (715)
-|+| -+.|.|-+|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 4855 57999999999999997
No 151
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=55.07 E-value=6.7 Score=27.60 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.1
Q ss_pred cccccccc-ccCCCCCCcccC
Q 005083 233 PCLYFARG-YCKNGSSCRFVH 252 (715)
Q Consensus 233 pC~YFarG-~CK~GssCrf~H 252 (715)
-|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 48998888 8865 6999999
No 152
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=54.43 E-value=5 Score=41.65 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=21.8
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005083 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrf~HG 253 (715)
+-.-.| .|=..|||-.|-+|+|+|-
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhh
Confidence 344578 8999999999999999996
No 153
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=52.02 E-value=18 Score=42.58 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=53.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhc--CCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEE
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLV 444 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSq--FG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mN--g~~L~GR~I~V 444 (715)
..+|.|+|-.=+..++.+|+|+.+|.- +=++.+|..-. .- =-||||++..+|+.|.+.|. -.+|.|+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 346777776555667889999999975 67888888865 22 37999999999999987763 35667776644
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=51.18 E-value=8.6 Score=41.60 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=63.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeec--c--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY--Q--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~--D--ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
....++|++.. .+.+.+.+...+|.++|.+.++.+.. + .++||+.|.|...+.+..++...-.+.+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 45778888865 56677777889999999998888765 2 8999999999999999999998544677777777665
Q ss_pred CccCC
Q 005083 447 YKEKG 451 (715)
Q Consensus 447 AkeK~ 451 (715)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 55554
No 155
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=50.72 E-value=7.8 Score=45.14 Aligned_cols=24 Identities=42% Similarity=1.065 Sum_probs=22.1
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005083 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~HG 253 (715)
..-||-=|-||.|++|-+|.|.||
T Consensus 235 s~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 235 SSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cCccCcccccCCCCCCCccccccc
Confidence 456999999999999999999999
No 156
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=42.33 E-value=9.7 Score=42.13 Aligned_cols=26 Identities=27% Similarity=0.855 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCCCCcccCCC
Q 005083 229 LGWRPCLYFARGYCKNGSSCRFVHGG 254 (715)
Q Consensus 229 ~g~kpC~YFarG~CK~GssCrf~HG~ 254 (715)
-.-|-|.+|.+|||.+|.+|++.|.-
T Consensus 132 t~~k~c~~~~~g~c~~g~~c~~~h~~ 157 (325)
T KOG1040|consen 132 TAIKKCKWYKEGFCRGGPSCKKRHER 157 (325)
T ss_pred hhhhccchhhhccCCCcchhhhhhhc
Confidence 46789999999999999999999983
No 157
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=37.17 E-value=16 Score=39.33 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.9
Q ss_pred CCCCCccc-ccccccccCC-CCCCcccCC
Q 005083 227 SGLGWRPC-LYFARGYCKN-GSSCRFVHG 253 (715)
Q Consensus 227 ~~~g~kpC-~YFarG~CK~-GssCrf~HG 253 (715)
.-+.-..| .|.-.|+|+. |.+|||.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 35677899 6677899999 999999888
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=31.98 E-value=76 Score=32.04 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=44.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhc-CCCe---EEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSq-FG~V---~dVrIp~D------ksRGFGFVTF~~~EsAe~ALe~mNg~~L~G 439 (715)
...+|+|++++ .++||+++.+..+. ++.- ..+.-..+ ..-.-|||.|.+.+++..-...++++.+.+
T Consensus 6 ~~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 44689999884 58999999998877 6666 33331111 122349999999999999999999977643
No 159
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=31.85 E-value=28 Score=42.90 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCc--eEcCeEEEEEeCc
Q 005083 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH--FVCDARVLVKPYK 448 (715)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~--~L~GR~I~Vk~Ak 448 (715)
+.-.+.|+.+++ -..+..-|..+|++||.|.+++..+| -..|.|+|...+.|-.|++++.|. .+.|.+.+|..++
T Consensus 296 plqp~~~~~nn~-v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNA-VNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhccc-ccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 444455666553 35678899999999999999999884 346999999999999999998764 4477788887765
Q ss_pred c
Q 005083 449 E 449 (715)
Q Consensus 449 e 449 (715)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 160
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=29.44 E-value=19 Score=38.39 Aligned_cols=22 Identities=36% Similarity=0.963 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005083 232 RPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~HG 253 (715)
-.|-.|..+.|..|..|.|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 161
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=29.21 E-value=12 Score=39.74 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHhhhcCCCeEEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 383 ~~~~TEedLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
+..++++.+.+.|+.-|+++.+|++.+ +.|.++||++-....+-.++....+..+-=+++.+
T Consensus 93 d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 93 DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 456899999999999999999999986 78999999998888888887765444433333333
No 162
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=19 Score=39.45 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=22.3
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005083 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrf~HG 253 (715)
+.--.| .|=-.|||-.|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 455689 8999999999999999996
No 163
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=28.70 E-value=28 Score=37.99 Aligned_cols=24 Identities=46% Similarity=1.004 Sum_probs=22.4
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005083 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~HG 253 (715)
.--+|++|-+|-|+.|-.|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 456999999999999999999999
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.42 E-value=87 Score=27.11 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.3
Q ss_pred HHHHHhhhcCCCeEEEEe
Q 005083 389 EDVSNYFSIYGPVQDVRI 406 (715)
Q Consensus 389 edLre~FSqFG~V~dVrI 406 (715)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999988877
No 165
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=26.01 E-value=30 Score=41.48 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=58.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 005083 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (715)
Q Consensus 372 ~sRtIYV~~~~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~Vk~ 446 (715)
-.-++||+++ .+.+..+-+..+...+|-|-.+.... |||..|.......+|+..+....++|..+.++.
T Consensus 39 ~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456777765 46778888889999999998887765 999999999999999999999999999888866
No 166
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=25.58 E-value=4.2e+02 Score=23.00 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHhhhcCCCeEEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 005083 382 ADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (715)
Q Consensus 382 ~~~~~TEedLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~EsAe~ALe~mNg~~L~GR~I~V 444 (715)
+.-.++-++++..+..|+- .+|+. | ..|| ||.|.+.++|++.....++..+-+.++.+
T Consensus 8 p~~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 8 PVHGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3456788999999999965 34543 2 3454 89999999999999998998888877654
No 167
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.30 E-value=36 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.4
Q ss_pred cc-ccccccccCCCCCCcccCCCCCC
Q 005083 233 PC-LYFARGYCKNGSSCRFVHGGETG 257 (715)
Q Consensus 233 pC-~YFarG~CK~GssCrf~HG~~~~ 257 (715)
-| .|-+.|+|..|-+|||+-+++..
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~ 141 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDI 141 (614)
T ss_pred ccceeeccccCCccceeehhhcccCc
Confidence 47 89999999999999999876533
No 168
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=22.40 E-value=33 Score=36.35 Aligned_cols=23 Identities=43% Similarity=0.899 Sum_probs=19.0
Q ss_pred cccccccccccCCCCCCcccCCCC
Q 005083 232 RPCLYFARGYCKNGSSCRFVHGGE 255 (715)
Q Consensus 232 kpC~YFarG~CK~GssCrf~HG~~ 255 (715)
--|+||--|-|.+- +|||+|=+.
T Consensus 262 pacryfllgkcnnp-ncryvhihy 284 (377)
T KOG1492|consen 262 PACRYFLLGKCNNP-NCRYVHIHY 284 (377)
T ss_pred chhhhhhhccCCCC-CceEEEEee
Confidence 35999999999874 899999643
No 169
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=21.17 E-value=44 Score=37.13 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=20.0
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005083 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (715)
Q Consensus 230 g~kpC~YFarG~CK~GssCrf~HG 253 (715)
-+.=|+=|.||-|.+-| |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 45668889999999976 999998
No 170
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=20.53 E-value=1.1e+02 Score=28.97 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred CHHHHHHhhhcCCCeEEEEeecc--CCCceEEEEEC-CHHHHHHHHHh
Q 005083 387 REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFV-YPETVKIILAK 431 (715)
Q Consensus 387 TEedLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~-~~EsAe~ALe~ 431 (715)
+.+.|++.|+.|.++ +|+.+++ -++|++.|.|. +..-...|+..
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 458999999999997 4777765 56899999995 45556666554
Done!