Your job contains 1 sequence.
>005084
MVLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQ
IIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI
ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL
WPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKVDVEDLT
VENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTL
RVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNED
EDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIV
LVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPKGYGIL
DGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDDGDNPETYYGSKGPGRGRGKG
RNRNGPACVPQSANKDSKSNSKAAIEDKPEISGSGNEGPADEIHSGVVGYSGGMLETAFV
EKEVQWKRSLKTDTAESKDSKPVPPVHFYALESDQPILDILKPFVIVVYHPDMSFVRQIE
VYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIPIDQV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005084
(715 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163011 - symbol:UVH1 "AT5G41150" species:3702... 1586 2.4e-203 2
ZFIN|ZDB-GENE-030131-5533 - symbol:ercc4 "excision repair... 587 4.1e-79 3
UNIPROTKB|F1RLR4 - symbol:ERCC4 "Uncharacterized protein"... 583 4.3e-79 3
UNIPROTKB|Q92889 - symbol:ERCC4 "DNA repair endonuclease ... 582 9.0e-79 3
UNIPROTKB|E2QYD6 - symbol:ERCC4 "Uncharacterized protein"... 571 7.0e-78 3
UNIPROTKB|Q6DFB2 - symbol:ercc4 "Ercc4-prov protein" spec... 591 1.1e-77 3
UNIPROTKB|E1BKV9 - symbol:ERCC4 "Uncharacterized protein"... 577 3.1e-77 3
UNIPROTKB|F1NAV2 - symbol:ERCC4 "Uncharacterized protein"... 604 3.6e-76 2
UNIPROTKB|Q9QYM7 - symbol:ERCC4 "DNA repair endonuclease ... 589 6.8e-75 2
MGI|MGI:1354163 - symbol:Ercc4 "excision repair cross-com... 585 8.1e-75 2
RGD|1560340 - symbol:Ercc4 "excision repair cross-complem... 578 4.0e-72 2
ASPGD|ASPL0000070525 - symbol:AN8713 species:162425 "Emer... 485 5.4e-72 4
UNIPROTKB|Q7RW07 - symbol:NCU07440 "Putative uncharacteri... 429 5.7e-57 3
RGD|1586469 - symbol:LOC688631 "similar to DNA repair end... 457 1.2e-56 2
POMBASE|SPCC970.01 - symbol:rad16 "DNA repair endonucleas... 430 5.2e-55 3
RGD|1304845 - symbol:Ercc4l1 "excision repair cross-compl... 451 5.6e-55 2
FB|FBgn0002707 - symbol:mei-9 "meiotic 9" species:7227 "D... 439 1.6e-51 3
DICTYBASE|DDB_G0284419 - symbol:xpf "DNA excision repair ... 375 3.3e-48 2
SGD|S000005943 - symbol:RAD1 "Single-stranded DNA endonuc... 337 2.7e-39 2
WB|WBGene00008140 - symbol:C47D12.8 species:6239 "Caenorh... 225 1.1e-25 3
UNIPROTKB|G5EBZ1 - symbol:C47D12.8 "Protein C47D12.8" spe... 225 1.1e-25 3
GENEDB_PFALCIPARUM|MAL13P1.346 - symbol:MAL13P1.346 "DNA ... 190 5.8e-10 2
>TAIR|locus:2163011 [details] [associations]
symbol:UVH1 "AT5G41150" species:3702 "Arabidopsis
thaliana" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IBA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IBA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006979 "response to
oxidative stress" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEP] [GO:0009314 "response to radiation"
evidence=IEP] InterPro:IPR006166 InterPro:IPR020819 Pfam:PF02732
SMART:SM00891 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006979
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0009314 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 EMBL:AB010072 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
HOGENOM:HOG000202204 KO:K10848 EMBL:AF089003 EMBL:AF160500
EMBL:AF277377 EMBL:AY140076 EMBL:AF191494 IPI:IPI00542407
IPI:IPI00546760 IPI:IPI00548326 RefSeq:NP_198931.1 UniGene:At.6598
UniGene:At.71026 ProteinModelPortal:Q9LKI5 SMR:Q9LKI5 STRING:Q9LKI5
PaxDb:Q9LKI5 PRIDE:Q9LKI5 EnsemblPlants:AT5G41150.1 GeneID:834117
KEGG:ath:AT5G41150 GeneFarm:4434 TAIR:At5g41150 InParanoid:Q9LKI5
OMA:QQSIVVD PhylomeDB:Q9LKI5 ProtClustDB:CLSN2686219
Genevestigator:Q9LKI5 GermOnline:AT5G41150 Uniprot:Q9LKI5
Length = 956
Score = 1586 (563.4 bits), Expect = 2.4e-203, Sum P(2) = 2.4e-203
Identities = 325/535 (60%), Positives = 394/535 (73%)
Query: 1 MVLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXX--XPNLK 58
M L++HQ II++LL++ N KLIAS+L+LHSPSQGT +LK
Sbjct: 1 MALKYHQQIISDLLEDSNGGLLILSSGLSLAKLIASLLILHSPSQGTLLLLLSPAAQSLK 60
Query: 59 SQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAG 118
S+IIHY++ P+EITADLPAN R++LY+SG FF+TPRILIVDLLTQR+P S+LAG
Sbjct: 61 SRIIHYISSLDSPTPTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAG 120
Query: 119 LIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKL 178
+ ILN H+++E STE FI RI+KSLN AYIRAFSD+P AMVSGFAKTER M++LF+RK+
Sbjct: 121 IFILNAHSISETSTEAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKI 180
Query: 179 HLWPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNKVDVED 238
HLWPRFQ++ MS YM GIQKAI+EVMDACLKEM+KTNKVDV+D
Sbjct: 181 HLWPRFQLDVSQELEREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDD 240
Query: 239 LTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLD 298
LTVE+GLFKSFDEI+RRQLDPIWH LGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LD
Sbjct: 241 LTVESGLFKSFDEIVRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLD 300
Query: 299 TLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNN 358
TLRVSES+RSVW+FAESSYKIFD+AKKRVYR ++ V+ K+ +GKKR K ++
Sbjct: 301 TLRVSESYRSVWLFAESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDS 360
Query: 359 EDEDGGTSSTS--TKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEEND 416
+ GG ++T+ T VV+EEVLEEAPKWK KQA S E D +N+
Sbjct: 361 VEAVGGETATNVATGVVVEEVLEEAPKWKVLREILEETQEERLKQAFSEE----DNSDNN 416
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTXXXXXXXXEPKG 476
GIVLVACKDE SCMQLEDCI N +KVMREEWE YLLSK++LRS+QT PKG
Sbjct: 417 -GIVLVACKDERSCMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKT-PKG 474
Query: 477 YGILDGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDD----GDNPETY 527
+GILDGV PV QN+E SSV +QEH+AL+AAAS IR GK+ D +NPE +
Sbjct: 475 FGILDGVVPVTTIQNSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPH 529
Score = 404 (147.3 bits), Expect = 2.4e-203, Sum P(2) = 2.4e-203
Identities = 76/95 (80%), Positives = 87/95 (91%)
Query: 620 SKPVPPVHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYE 679
+K +PPVHFYALESDQPILDILKP VI+VYHPDM FVR++EVYKAENP KLKVYF+FY+
Sbjct: 594 AKKLPPVHFYALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYD 653
Query: 680 DSTEVQKFKAGIRRENGAFESLIRQKSFMMIPIDQ 714
+STEVQKF+A IRREN AFESLIRQKS M+IP+DQ
Sbjct: 654 ESTEVQKFEASIRRENEAFESLIRQKSSMIIPVDQ 688
Score = 40 (19.1 bits), Expect = 7.3e-165, Sum P(2) = 7.3e-165
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 679 EDSTEVQKFKAGIRRENGAFESLIRQKSF 707
++ E + + G+ E G E+ IR +++
Sbjct: 863 DEPDETRAIRVGVPSEEGIIENDIRAENY 891
>ZFIN|ZDB-GENE-030131-5533 [details] [associations]
symbol:ercc4 "excision repair cross-complementing
rodent repair deficiency, complementation group 4" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IBA]
[GO:0003697 "single-stranded DNA binding" evidence=IBA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IBA] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IBA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
ZFIN:ZDB-GENE-030131-5533 GO:GO:0003697 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712 GO:GO:0000014
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
HOGENOM:HOG000202204 TIGRFAMs:TIGR00596 KO:K10848 CTD:2072
HOVERGEN:HBG051500 OrthoDB:EOG4T1HKT EMBL:BC054895 IPI:IPI00480931
RefSeq:NP_956079.1 UniGene:Dr.26626 HSSP:Q8TZH8
ProteinModelPortal:Q7SYE8 STRING:Q7SYE8 GeneID:327322
KEGG:dre:327322 NextBio:20809978 Uniprot:Q7SYE8
Length = 886
Score = 587 (211.7 bits), Expect = 4.1e-79, Sum P(3) = 4.1e-79
Identities = 118/288 (40%), Positives = 179/288 (62%)
Query: 72 LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS 131
LP +T+D+ + R+ +Y+ G + FVT RIL+VD LT R+P + G+++ H + E+
Sbjct: 74 LPQTVTSDVQSADRYNVYTKGGVLFVTSRILVVDFLTDRIPAHLVTGILVYRAHNIIESC 133
Query: 132 TETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXX 191
E FI R+ + N+ +I+AF+DK T+ SGF K ER+M++LF++KL LWPRFQ +
Sbjct: 134 QEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCKVERVMRNLFVKKLFLWPRFQASVNAT 193
Query: 192 XXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFD 250
++ M IQ +IL++M+ACLKE+++ N ++ EDL++EN L +F+
Sbjct: 194 LDKHKPDVVELHVTLTPAMRAIQSSILDIMNACLKELKRYNPTLEAEDLSLENSLGTAFE 253
Query: 251 EILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSE-SF--R 307
+ +R LDP+WH LG +TK LV DLK LR LL YL +YD VT+L L++LR S+ SF
Sbjct: 254 KTIRHYLDPLWHQLGSRTKSLVQDLKILRTLLLYLTQYDCVTFLNLLESLRTSQKSFGSN 313
Query: 308 SVWIFAESSYKIFDYAKKRVYRFTRSDG---VELNGQSKSVTGKKRKL 352
S W+F +SS +F A+ RVYR S V Q +++ KR+L
Sbjct: 314 SGWLFLDSSMSMFVNARSRVYRIQESKKKLKVGETEQKQNLAPPKREL 361
Score = 187 (70.9 bits), Expect = 4.1e-79, Sum P(3) = 4.1e-79
Identities = 45/124 (36%), Positives = 70/124 (56%)
Query: 592 GGMLETAFVEKEVQWKRSLKTDTAESKDSKPVPPVHFYALESDQ----PILDILKPFVIV 647
GG++E E+E + L +D +P+ +H SD +L + P +V
Sbjct: 494 GGLIEE---EEEEEIVLDLSSDDYYGILKEPLTVIHPLKGCSDPYSLTRVLHEVDPMFVV 550
Query: 648 VYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSF 707
+Y ++SFVRQ+E+YKA P L+VYFL Y STE Q++ + +E AFE LIR+K+
Sbjct: 551 LYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQRYLTALNKEKQAFEHLIREKAS 610
Query: 708 MMIP 711
M++P
Sbjct: 611 MVVP 614
Score = 65 (27.9 bits), Expect = 4.1e-79, Sum P(3) = 4.1e-79
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 375 EEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLE 434
E VLE+ PKW+ Q +E E++ G VL+ D+ +C QL+
Sbjct: 360 ELVLEKNPKWEALTEVL---------QEIEKEN---SKSEHEPGRVLICASDDRTCAQLK 407
Query: 435 DCIRNGSEKVMREEWEK 451
+ I+ G E ++ + +
Sbjct: 408 EYIQKGPEHLLNRLYSR 424
>UNIPROTKB|F1RLR4 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IEA] [GO:0009650 "UV protection" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0004520
GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:CU915697
EMBL:CU928108 Ensembl:ENSSSCT00000008636 Uniprot:F1RLR4
Length = 917
Score = 583 (210.3 bits), Expect = 4.3e-79, Sum P(3) = 4.3e-79
Identities = 137/390 (35%), Positives = 212/390 (54%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + ++ ELL +L+ L LH P +
Sbjct: 15 LLEYERQLVLELLDADGLVVCARGLGAD--RLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N+R+ +Y+ G + F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITSNNRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF++KL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAIAFDTGFCHVERVMRNLFVKKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V+ M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVSVNSFLEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN + K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSE-SF--RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKL-KKV 355
LR +E +F S W+F +SS +F A+ RVY +K KK K+ +++
Sbjct: 313 LRATEKAFGQNSGWLFLDSSTSLFVNARARVYHVP---------DTKM--SKKGKMPEEI 361
Query: 356 DNNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
+ E++D TK L VLE PKW+
Sbjct: 362 EIKEEQD-------TKKEL--VLESNPKWE 382
Score = 196 (74.1 bits), Expect = 4.3e-79, Sum P(3) = 4.3e-79
Identities = 53/156 (33%), Positives = 84/156 (53%)
Query: 568 KPEISGSGNEGPADE--IHSGVV-----GYSGGMLETAFVE-KEVQWKRSLKTDTAESKD 619
KP ++ + G ADE G V G E+ F E K ++ +L +D+A
Sbjct: 489 KPRLTLTQMVGRADEPAAEEGAVEEERPGDGSSSPESCFQEIKHEEFDLNLSSDSAYGIL 548
Query: 620 SKPVPPVHFYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYF 675
P+ +H SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYF
Sbjct: 549 KDPLTILHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRAARPGRPLRVYF 608
Query: 676 LFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
L Y STE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 609 LIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVP 644
Score = 64 (27.6 bits), Expect = 4.3e-79, Sum P(3) = 4.3e-79
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 375 EEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLE 434
E VLE PKW+ +A ++E L G G VL+ D+ +C QL
Sbjct: 372 ELVLESNPKWEALTEVLKEI------EAENKESEALGGP----GQVLICASDDRTCSQLR 421
Query: 435 DCIRNGSEKVMREEWEK 451
+ + G+E + + K
Sbjct: 422 EYLAVGAEAFLLRLYRK 438
>UNIPROTKB|Q92889 [details] [associations]
symbol:ERCC4 "DNA repair endonuclease XPF" species:9606
"Homo sapiens" [GO:0009650 "UV protection" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IDA;IMP;TAS]
[GO:0003684 "damaged DNA binding" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IMP] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IMP] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IDA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009411 "response to UV" evidence=IMP] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IDA] [GO:0032205 "negative
regulation of telomere maintenance" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IMP;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0000109 "nucleotide-excision repair complex"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IMP] Reactome:REACT_216 InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
GO:GO:0009411 GO:GO:0005654 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000784
GO:GO:0009650 GO:GO:0000718 GO:GO:0006283 GO:GO:0000712
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0032205
GO:GO:0006295 GO:GO:0006296 GO:GO:0000110 PDB:1Z00 PDB:2A1J
PDBsum:1Z00 PDBsum:2A1J eggNOG:COG1948 Gene3D:3.40.50.10130
GO:GO:0000710 GO:GO:0010834 HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
KO:K10848 OMA:QQSIVVD CTD:2072 HOVERGEN:HBG051500 EMBL:L77890
EMBL:AK289726 EMBL:AF491814 EMBL:U64315 IPI:IPI00219179
RefSeq:NP_005227.1 UniGene:Hs.567265 PDB:2AQ0 PDB:2KN7 PDBsum:2AQ0
PDBsum:2KN7 ProteinModelPortal:Q92889 SMR:Q92889 DIP:DIP-42006N
IntAct:Q92889 STRING:Q92889 PhosphoSite:Q92889 DMDM:229463004
PaxDb:Q92889 PRIDE:Q92889 DNASU:2072 Ensembl:ENST00000311895
GeneID:2072 KEGG:hsa:2072 UCSC:uc002dce.2 GeneCards:GC16P014014
H-InvDB:HIX0038603 H-InvDB:HIX0173284 HGNC:HGNC:3436 HPA:CAB000156
MIM:133520 MIM:278760 MIM:610965 neXtProt:NX_Q92889 Orphanet:276264
PharmGKB:PA27850 InParanoid:Q92889 EvolutionaryTrace:Q92889
GenomeRNAi:2072 NextBio:8429 ArrayExpress:Q92889 Bgee:Q92889
CleanEx:HS_ERCC4 Genevestigator:Q92889 GermOnline:ENSG00000175595
Uniprot:Q92889
Length = 916
Score = 582 (209.9 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 139/390 (35%), Positives = 209/390 (53%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + ++ ELL +L+ L LH P +
Sbjct: 15 LLEYERQLVLELLDTDGLVVCARGLGAD--RLLYHFLQLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G + F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITSNSRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN + K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSE-SF--RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKL-KKV 355
LR +E +F S W+F +SS +F A+ RVY +K KK K+ +K+
Sbjct: 313 LRATEKAFGQNSGWLFLDSSTSMFINARARVYHLP---------DAKM--SKKEKISEKM 361
Query: 356 DNNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
+ E E+ TK L VLE PKW+
Sbjct: 362 EIKEGEE-------TKKEL--VLESNPKWE 382
Score = 187 (70.9 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 41/114 (35%), Positives = 68/114 (59%)
Query: 602 KEVQWKRSLKTDTAESKDSKPVPPVHFYALESDQ----PILDILKPFVIVVYHPDMSFVR 657
K ++ +L +D A +P+ +H SD +L ++P +V+Y +++FVR
Sbjct: 530 KHEEFDVNLSSDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVR 589
Query: 658 QIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q+E+Y+A P L+VYFL Y STE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 590 QLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVP 643
Score = 71 (30.1 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 375 EEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLE 434
E VLE PKW+ +A ++E L G G VL+ D+ +C QL
Sbjct: 372 ELVLESNPKWEALTEVLKEI------EAENKESEALGGP----GQVLICASDDRTCSQLR 421
Query: 435 DCIRNGSE----KVMREEWEK 451
D I G+E ++ R+ +EK
Sbjct: 422 DYITLGAEAFLLRLYRKTFEK 442
>UNIPROTKB|E2QYD6 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:AAEX03004509
EMBL:AAEX03004510 Ensembl:ENSCAFT00000029890 Uniprot:E2QYD6
Length = 918
Score = 571 (206.1 bits), Expect = 7.0e-78, Sum P(3) = 7.0e-78
Identities = 120/313 (38%), Positives = 186/313 (59%)
Query: 72 LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS 131
LP +T ++ +N R+ +Y+ G + F T RIL+VD LT R+P+ + G+++ H + E+
Sbjct: 86 LPRRVTNEITSNSRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGILVYRAHRIIESC 145
Query: 132 TETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXX 191
E FI R+ + N+ +I+AF+D A +GF ER+M++LF+ KL+LWPRF V
Sbjct: 146 QEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVGKLYLWPRFHVAVNSF 205
Query: 192 XXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDLTVENGLFKSFD 250
M+ M IQ AIL++++ACLKE++ N ++VEDL++EN + K FD
Sbjct: 206 LEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDLSLENAIGKPFD 265
Query: 251 EILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSE-SF--R 307
+ +R LDP+WH LG KTK LV DLK LR LL YL +YD +T+L L++LR +E +F
Sbjct: 266 KTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCITFLNLLESLRATEKAFGQN 325
Query: 308 SVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSS 367
S W+F +SS +F A+ RVY + ++N + K +K ++K+ D ++ S
Sbjct: 326 SGWLFLDSSTSMFVNARARVYHLPDA---KMNKKGKM--SEKMEIKE-DQEAKKELVLES 379
Query: 368 TSTKVVLEEVLEE 380
L EVL+E
Sbjct: 380 NPKWEALTEVLKE 392
Score = 195 (73.7 bits), Expect = 7.0e-78, Sum P(3) = 7.0e-78
Identities = 48/143 (33%), Positives = 80/143 (55%)
Query: 576 NEGPADE--IHSGVVGYSGGMLETAFVE-KEVQWKRSLKTDTAESKDSKPVPPVHFYALE 632
+E P +E + G +G E++ E K ++ +L +D A P+ +H
Sbjct: 503 SEEPDEEQDVKEGYPRDTGSSPESSLEEIKHEEFDLNLSSDAAYGLLKDPLTILHPLLGC 562
Query: 633 SDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFK 688
SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYFL Y STE Q++
Sbjct: 563 SDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYL 622
Query: 689 AGIRRENGAFESLIRQKSFMMIP 711
+R+E AFE LIR+K+ M++P
Sbjct: 623 TALRKEKEAFEKLIREKASMVVP 645
Score = 67 (28.6 bits), Expect = 7.0e-78, Sum P(3) = 7.0e-78
Identities = 22/77 (28%), Positives = 33/77 (42%)
Query: 375 EEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLE 434
E VLE PKW+ +A ++E L G G VL+ D+ +C QL
Sbjct: 374 ELVLESNPKWEALTEVLKEI------EAENKESEALGGP----GQVLICASDDRTCSQLR 423
Query: 435 DCIRNGSEKVMREEWEK 451
+ I G+E + + K
Sbjct: 424 EYITIGAEAFLMRLYRK 440
>UNIPROTKB|Q6DFB2 [details] [associations]
symbol:ercc4 "Ercc4-prov protein" species:8355 "Xenopus
laevis" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=ISS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=ISS] [GO:0047485 "protein N-terminus
binding" evidence=ISS] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] [GO:0043566 "structure-specific DNA binding"
evidence=ISS] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0009411
GO:GO:0003684 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0008022 GO:GO:0004519 GO:GO:0000784
GO:GO:0047485 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0032205
GO:GO:0006295 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
TIGRFAMs:TIGR00596 KO:K10848 CTD:2072 HOVERGEN:HBG051500
EMBL:BC076828 RefSeq:NP_001086576.1 UniGene:Xl.5314
ProteinModelPortal:Q6DFB2 SMR:Q6DFB2 GeneID:446411 KEGG:xla:446411
Xenbase:XB-GENE-986818 Uniprot:Q6DFB2
Length = 897
Score = 591 (213.1 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 116/289 (40%), Positives = 183/289 (63%)
Query: 72 LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS 131
LP I ++ R+ +Y+ G + FVT RIL+VD LT R+P + + G+++ N H + E+
Sbjct: 73 LPRIINNEVATGERYDVYTQGGVLFVTSRILVVDFLTDRIPANLITGILVYNAHKIIESC 132
Query: 132 TETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXX 191
E FI R+ + N++ +I+AF+D P A +GF + ER+M++LF++KL+LWPRF V+
Sbjct: 133 QEAFILRLYRQKNKQGFIKAFTDNPVAFHAGFCQVERVMRNLFVKKLYLWPRFHVSVNSF 192
Query: 192 XXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFD 250
M+ M IQ +IL++M+ACLKE+++ N ++VEDL++EN + K+FD
Sbjct: 193 LDKHKPEVVELHVSMTPSMLAIQSSILDIMNACLKELKRFNPALEVEDLSLENAIGKAFD 252
Query: 251 EILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSE-SF--R 307
+ +R LDP+WH LG KTK LV DLK LR +L YL +YD VT+L L++++ SE +F
Sbjct: 253 KTIRHYLDPLWHQLGAKTKSLVQDLKILRTMLQYLSQYDCVTFLNLLESMKASEKAFGQN 312
Query: 308 SVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQS---KSVTGKKRKLK 353
S W+F +SS +F +A+ RV+ S ++ + QS + GKK L+
Sbjct: 313 SGWLFLDSSTSMFVHARARVFHVPDSKAIKKSKQSDPKEKQDGKKLVLE 361
Score = 175 (66.7 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENG 696
+L ++P +V+Y ++SFVRQ+E+Y+A L+VYFL Y STE Q++ +R+E
Sbjct: 551 VLHEIEPRYVVLYDSEVSFVRQLEIYRASKQK-PLRVYFLIYGGSTEEQRYLTSLRKEKE 609
Query: 697 AFESLIRQKSFMMIP 711
AFE LIR+K+ M+IP
Sbjct: 610 AFEKLIREKASMVIP 624
Score = 60 (26.2 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 31/155 (20%), Positives = 60/155 (38%)
Query: 377 VLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDC 436
VLE PKW+ +Q + E L G VL+ D+ +C QL +
Sbjct: 359 VLESNPKWEALSEVLKEI-----EQENKNSEAL-----GGPGRVLICASDDRTCSQLREY 408
Query: 437 IRNGSEKVMREEWEKYLLSKVQLRSVQTXXXXXXXXEPKGYGILDGVAPVKIAQNAEASS 496
+ G+E ++ + K + + ++ + + KG + I + E +
Sbjct: 409 VAVGAEALLMRLYNK-TFGRDE-KAAEVWIKSRKAMKAKGN---NKSMKTSIHKKTEGKA 463
Query: 497 VSKQEHDALLAAASKIRNQGKSDD-G-DNPETYYG 529
K+ + +++ +G+ D+ G D E YG
Sbjct: 464 KQKKNNKKTELTLTQMIGKGEEDEMGKDGEEETYG 498
>UNIPROTKB|E1BKV9 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IEA] [GO:0009650 "UV protection" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0004520
GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD CTD:2072
EMBL:DAAA02057526 EMBL:DAAA02057527 IPI:IPI01003251
RefSeq:NP_001192289.1 UniGene:Bt.23646 Ensembl:ENSBTAT00000046336
GeneID:516371 KEGG:bta:516371 NextBio:20872200 Uniprot:E1BKV9
Length = 916
Score = 577 (208.2 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 132/384 (34%), Positives = 205/384 (53%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + ++ ELL +L+ L LH P +
Sbjct: 15 LLEYERQLVLELLDADGLVVCARGLGAD--RLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ ++R+ +Y+ G + F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITGSNRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLELHKPEVVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN + K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD +T+L L++
Sbjct: 253 SLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCITFLNLLES 312
Query: 300 LRVSE-SF--RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E +F S W+F +SS +F A+ RVY + KS +K ++K+ +
Sbjct: 313 LRATEKAFGQNSGWLFLDSSTSMFVNARARVYHVP-----DAKMSKKSRLPEKLEIKE-E 366
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEE 380
+D S L EVL+E
Sbjct: 367 QETKKDLVLESNPKWAALTEVLKE 390
Score = 186 (70.5 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENG 696
+L ++P +V+Y +++FVRQ+E+Y+A P L+VYFL Y STE Q++ +R+E
Sbjct: 569 VLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKE 628
Query: 697 AFESLIRQKSFMMIP 711
AFE LIR+K+ M+IP
Sbjct: 629 AFEKLIREKASMVIP 643
Score = 63 (27.2 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 377 VLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDC 436
VLE PKW +A ++E +L G G VL+ D+ +C QL +
Sbjct: 374 VLESNPKWAALTEVLKEI------EAENKESEVLGGP----GQVLICASDDRTCSQLREY 423
Query: 437 IRNGSE----KVMREEWEK 451
+ G+E ++ R+ +EK
Sbjct: 424 LTVGAEVFLLRLYRKTFEK 442
>UNIPROTKB|F1NAV2 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010834
"telomere maintenance via telomere shortening" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0004520 GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:AADN02023914
EMBL:AADN02023915 IPI:IPI00573514 Ensembl:ENSGALT00000004716
ArrayExpress:F1NAV2 Uniprot:F1NAV2
Length = 897
Score = 604 (217.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 126/313 (40%), Positives = 192/313 (61%)
Query: 72 LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS 131
LP +T ++P+N R+ Y+ G + F T RIL+VD LT R+P + + G+++ H + E+
Sbjct: 73 LPRRVTNEIPSNTRYEFYTQGGVLFATSRILVVDFLTDRIPANLITGVLVYKAHRIIESC 132
Query: 132 TETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXX 191
E+FI R+ + N+E +I+AF+D A +GF + ER+M++LF+RKL+LWPRF +
Sbjct: 133 QESFILRLYRQKNKEGFIKAFTDNAVAFNTGFCQVERVMRNLFVRKLYLWPRFHIAVNSF 192
Query: 192 XXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFD 250
M+ M IQ +IL++++ACL+E+++ N ++VEDL++EN L K+FD
Sbjct: 193 LEKHKPEVVEIHVSMTPSMLAIQTSILDILNACLRELKRYNPALEVEDLSLENALGKAFD 252
Query: 251 EILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSE-SF--R 307
+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++L+ SE +F
Sbjct: 253 KTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLTQYDCVTFLNLLESLKASEKAFGEN 312
Query: 308 SVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSS 367
S W+F +SS +F A+ RVYR T + +LN + K + R +KK +N + S
Sbjct: 313 SGWLFLDSSTSMFVNARARVYR-TADE--KLNQKGK--VSENRDVKK-ENELKRELVLES 366
Query: 368 TSTKVVLEEVLEE 380
L EVL E
Sbjct: 367 NPKWEALREVLNE 379
Score = 189 (71.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 43/127 (33%), Positives = 69/127 (54%)
Query: 589 GYSGGMLETAFVEKEVQWKRSLKTDTAESKDSKPVPPVH-FYALESDQPILDIL---KPF 644
G G +E F E + L +D+ P+ +H Y + +L +P
Sbjct: 507 GSQEGSIEETFPE---DFPVKLPSDSYYGIFKNPLTIIHPLYGCSDPYALTRVLHEVEPR 563
Query: 645 VIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQ 704
+V+Y +++FVRQ+E+YKA P L+VYFL Y STE Q++ +R+E AFE LIR+
Sbjct: 564 YVVLYDAELTFVRQLEIYKAGRPGKPLRVYFLIYGSSTEEQRYLTALRKEKEAFEKLIRE 623
Query: 705 KSFMMIP 711
++ M++P
Sbjct: 624 RASMVVP 630
Score = 72 (30.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 44/194 (22%), Positives = 76/194 (39%)
Query: 342 SKSVTGKKRKLKKVDNNEDEDGGTSST-----STKVVLEEVLEEAPKWKXXXXXXXXXXX 396
S V + R + D ++ G S ++ E VLE PKW+
Sbjct: 323 SMFVNARARVYRTADEKLNQKGKVSENRDVKKENELKRELVLESNPKWEALREVLNEIE- 381
Query: 397 XXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSK 456
+ + E+ L G G VL+ D+ +C QL + I +G+E + + K L K
Sbjct: 382 ---NENKNSED--LGGP----GQVLICASDDRACAQLREYITDGAEAFLMRLYNK-TLGK 431
Query: 457 VQLRSVQTXXXXXXXXEPKGYGILDGVAPVKIAQNAEASSVSK--QEHDALLA---AASK 511
+ ++ + + KG D K A+ + S +K ++HD + +K
Sbjct: 432 DE-KAGEVWIKDRKVVKSKGNARPDTGPQAKKAKLSTGSKQNKHKKQHDQTVVQMIGKTK 490
Query: 512 IRNQGKSDDGDNPE 525
N+ + D DN E
Sbjct: 491 EENREELDVEDNKE 504
>UNIPROTKB|Q9QYM7 [details] [associations]
symbol:ERCC4 "DNA repair endonuclease XPF" species:10029
"Cricetulus griseus" [GO:0000110 "nucleotide-excision repair factor
1 complex" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=ISS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=ISS] [GO:0043566 "structure-specific DNA
binding" evidence=ISS] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0009411
GO:GO:0003684 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0004519 GO:GO:0000784 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0000110 Gene3D:3.40.50.10130 TIGRFAMs:TIGR00596 EMBL:AB017635
RefSeq:NP_001230961.1 ProteinModelPortal:Q9QYM7 SMR:Q9QYM7
GeneID:100689044 CTD:2072 HOVERGEN:HBG051500 Uniprot:Q9QYM7
Length = 913
Score = 589 (212.4 bits), Expect = 6.8e-75, Sum P(2) = 6.8e-75
Identities = 131/359 (36%), Positives = 199/359 (55%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + ++ ELL +L+ L LH P +
Sbjct: 15 LLEYERQLVLELLDSDGLVVCARGLGAD--RLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G I F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITSNSRYEVYTQGGIIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLSIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN L K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSK-SVTGKKRKLKK 354
LR +E S W+F ++S +F A+ RVYR V+LN ++K S + + ++ KK
Sbjct: 313 LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLNKKAKMSESAEGQETKK 368
Score = 195 (73.7 bits), Expect = 6.8e-75, Sum P(2) = 6.8e-75
Identities = 50/150 (33%), Positives = 80/150 (53%)
Query: 566 EDKPEISGSGNEGPADEIHSGVVGYSGGMLETAFVEKEVQWKRSLKTDTAESKDSKPVPP 625
E+ PE G+ E + S G G + AF +L +D+A +P+
Sbjct: 499 EEPPE-EGAAEEDQQRQATSSPEGCGGEIQHEAF-------DLNLSSDSAYGILKEPLTI 550
Query: 626 VHFYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDS 681
+H SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYFL Y S
Sbjct: 551 IHPLVGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGS 610
Query: 682 TEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
TE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 611 TEEQRYLTALRKEKEAFEKLIREKASMVVP 640
Score = 82 (33.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 64/249 (25%), Positives = 102/249 (40%)
Query: 216 AILEVMDACLKEMR---KTNKVDVEDLTVENGLFKSFDEILRRQLDP-IWHILGKKTKQL 271
A+L + A L + K K L VE+ S + L + D I H L QL
Sbjct: 221 AMLSIQTAILDILNACLKELKCHNPSLEVED---LSLENALGKPFDKTIRHYLDPLWHQL 277
Query: 272 VSDLKTLRKLLDYLVRYDAVTYLKYLDT---LRVSESFRSVW-IFAESSYKIFDYAKKRV 327
+ K+L + D + + YL D L + ES R+ +F ++S +F A +
Sbjct: 278 GAKTKSL--VQDLKILRTLLQYLSQYDCVTFLNLLESLRATEKVFGQNSGWLFLDASTSM 335
Query: 328 YRFTRSDGVELNGQSKSVTGKKRKL-KKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKX 386
+ +N +++ KL KK +E +G TK L VLE PKW+
Sbjct: 336 F---------VNARARVYRVPDVKLNKKAKMSESAEG----QETKKEL--VLESNPKWEA 380
Query: 387 XXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSE---- 442
+A ++E L G G VL+ D+ +C QL D + G+E
Sbjct: 381 LSEVLKEI------EAENKESEALGGP----GQVLICASDDRTCCQLRDYLTAGAEAFLL 430
Query: 443 KVMREEWEK 451
++ R+ +EK
Sbjct: 431 RLYRKTFEK 439
>MGI|MGI:1354163 [details] [associations]
symbol:Ercc4 "excision repair cross-complementing rodent
repair deficiency, complementation group 4" species:10090 "Mus
musculus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISO;IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000723 "telomere maintenance" evidence=ISO] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO;IBA] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISO] [GO:0001094 "TFIID-class transcription factor
binding" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003697 "single-stranded
DNA binding" evidence=ISO;IBA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005669 "transcription factor TFIID complex"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISO;IBA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0009411 "response to UV" evidence=ISO]
[GO:0009650 "UV protection" evidence=IMP] [GO:0010834 "telomere
maintenance via telomere shortening" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032205 "negative regulation
of telomere maintenance" evidence=ISO] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=ISO]
[GO:0047485 "protein N-terminus binding" evidence=ISO]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 MGI:MGI:1354163 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0001094 GO:GO:0000784 GO:GO:0009650 GO:GO:0000712
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0005669
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710 GO:GO:0010834
HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD CTD:2072
HOVERGEN:HBG051500 EMBL:AF189285 EMBL:AC004155 EMBL:BC026792
IPI:IPI00137263 RefSeq:NP_056584.2 UniGene:Mm.287837
ProteinModelPortal:Q9QZD4 SMR:Q9QZD4 STRING:Q9QZD4
PhosphoSite:Q9QZD4 PaxDb:Q9QZD4 PRIDE:Q9QZD4
Ensembl:ENSMUST00000023206 GeneID:50505 KEGG:mmu:50505
UCSC:uc007yfx.2 InParanoid:Q9QZD4 OrthoDB:EOG4T1HKT NextBio:307508
Bgee:Q9QZD4 Genevestigator:Q9QZD4 GermOnline:ENSMUSG00000022545
Uniprot:Q9QZD4
Length = 917
Score = 585 (211.0 bits), Expect = 8.1e-75, Sum P(2) = 8.1e-75
Identities = 137/384 (35%), Positives = 207/384 (53%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + + ELL +L+ L LH P +
Sbjct: 15 LLEYERQQVLELLDSDGLVVCARGLGTD--RLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G I F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGIIFATSRILVVDFLTGRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN L K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E S W+F ++S +F A+ RVYR V+LN ++K T +K +V
Sbjct: 313 LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLNKKAK--TSEKTSSPEVQ 367
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEE 380
+ E S+ + L +VL+E
Sbjct: 368 ETKKELVLESNPKWEA-LTDVLKE 390
Score = 199 (75.1 bits), Expect = 8.1e-75, Sum P(2) = 8.1e-75
Identities = 48/148 (32%), Positives = 81/148 (54%)
Query: 570 EISGSGNEGPADE-IHSGVVGYSGGMLETAFVE-KEVQWKRSLKTDTAESKDSKPVPPVH 627
++ GS E P D+ + + + E VE K + ++ +D A +P+ +H
Sbjct: 497 QVLGSAEEPPEDKALEEDLCRQTSSSPEGCGVEIKRESFDLNVSSDAAYGILKEPLTIIH 556
Query: 628 FYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTE 683
SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYFL Y STE
Sbjct: 557 PLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTE 616
Query: 684 VQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q++ +R+E AFE LIR+K+ M++P
Sbjct: 617 EQRYLTALRKEKEAFEKLIREKASMVVP 644
Score = 76 (31.8 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 38/164 (23%), Positives = 67/164 (40%)
Query: 292 TYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRK 351
T L+YL +F ++ ++ K+F ++ S + +N +++ K
Sbjct: 293 TLLQYLSQYDCV-TFLNLLESLRATEKVFGQNSGWLF-LDASTSMFVNARARVYRVPDVK 350
Query: 352 LKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLD 411
L K ++ TK L VLE PKW+ +A ++E L
Sbjct: 351 LNKKAKTSEKTSSPEVQETKKEL--VLESNPKWEALTDVLKEI------EAENKESEALG 402
Query: 412 GEENDHGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G G VL+ D+ +C QL D + G+E ++ R+ +EK
Sbjct: 403 GP----GRVLICASDDRTCCQLRDYLSAGAETFLLRLYRKTFEK 442
>RGD|1560340 [details] [associations]
symbol:Ercc4 "excision repair cross-complementing rodent repair
deficiency, complementation group 4" species:10116 "Rattus
norvegicus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISO;IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000723 "telomere maintenance" evidence=ISO] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO;IBA] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISO] [GO:0001094 "TFIID-class transcription factor
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IBA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=ISO;IBA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0009411 "response to UV" evidence=ISO]
[GO:0009650 "UV protection" evidence=ISO] [GO:0010834 "telomere
maintenance via telomere shortening" evidence=ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISO]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0043566 "structure-specific DNA binding"
evidence=ISO] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 RGD:1560340
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
TIGRFAMs:TIGR00596 OrthoDB:EOG4T1HKT IPI:IPI00371802
Ensembl:ENSRNOT00000004563 UCSC:RGD:1560340 NextBio:653511
ArrayExpress:D3ZT95 Uniprot:D3ZT95
Length = 917
Score = 578 (208.5 bits), Expect = 4.0e-72, Sum P(2) = 4.0e-72
Identities = 139/389 (35%), Positives = 205/389 (52%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + + ELL +L+ L LH P +
Sbjct: 15 LLEYERQQVLELLDSDGLVVCARGLGAD--RLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G I F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGIIFATSRILVVDFLTGRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF++KL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVKKLYL 192
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V M+ M IQ AIL+V++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLAIQTAILDVLNACLKELKYHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN L K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E S W+F ++S +F A+ RVYR V+L+ ++K T +K
Sbjct: 313 LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLSKKTK--TSEKM------ 361
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
G TK L VLE PKW+
Sbjct: 362 ------AGPEEQETKKEL--VLESNPKWE 382
Score = 181 (68.8 bits), Expect = 4.0e-72, Sum P(2) = 4.0e-72
Identities = 44/148 (29%), Positives = 79/148 (53%)
Query: 570 EISGSGNEGPAD-EIHSGVVGYSGGMLETAFVE-KEVQWKRSLKTDTAESKDSKPVPPVH 627
++ G+ E P + + + +G E E + + ++ +D A +P+ +H
Sbjct: 497 QVLGTAEEPPEEGAVEEDLHKQTGSSPEVCGGEIQHESFDLNVSSDAAYGILKEPLTIIH 556
Query: 628 FYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTE 683
SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYF Y STE
Sbjct: 557 PLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTE 616
Query: 684 VQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q++ +R+E AFE LIR+K+ M++P
Sbjct: 617 EQRYLTALRKEKEAFEKLIREKASMVVP 644
Score = 79 (32.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 38/164 (23%), Positives = 67/164 (40%)
Query: 292 TYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRK 351
T L+YL +F ++ ++ K+F ++ S + +N +++ K
Sbjct: 293 TLLQYLSQYDCV-TFLNLLESLRATEKVFGQNSGWLF-LDASTSMFVNARARVYRVPDVK 350
Query: 352 LKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLD 411
L K ++ G TK L VLE PKW+ + ++E L
Sbjct: 351 LSKKTKTSEKMAGPEEQETKKEL--VLESNPKWEALTEVLKEI------ETENKESEALG 402
Query: 412 GEENDHGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G G VL+ D+ +C QL D + G+E ++ R+ +EK
Sbjct: 403 GP----GQVLICASDDRTCCQLRDYLTAGAEAFLLRLYRKTFEK 442
>ASPGD|ASPL0000070525 [details] [associations]
symbol:AN8713 species:162425 "Emericella nidulans"
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0007534 "gene conversion at mating-type
locus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0044732 "mitotic spindle pole body"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 EMBL:BN001303 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
OMA:QQSIVVD EnsemblFungi:CADANIAT00006357 Uniprot:C8VA33
Length = 985
Score = 485 (175.8 bits), Expect = 5.4e-72, Sum P(4) = 5.4e-72
Identities = 118/318 (37%), Positives = 173/318 (54%)
Query: 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFI 136
+AD R +Y+ G I VT RIL+VDLL++ L + GL++L+ + STE FI
Sbjct: 103 SADATDCSREKIYAEGGILSVTSRILVVDLLSKLLDPERVTGLVVLHADKIVATSTEAFI 162
Query: 137 CRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXXXXXXX 196
RI ++ N+ +++AFSD P +GFA +++LF+RK LWPRF V
Sbjct: 163 IRIYRNANKSGFLKAFSDSPEPFTTGFAPLANSLRNLFLRKASLWPRFHVTVAESLEGHR 222
Query: 197 XXXXXXXXX-MSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFDEILR 254
MS M IQ A+LE ++ C+ E++K N +D+ D T+++ L +SFD +R
Sbjct: 223 KAEVIELEVPMSDKMREIQNAVLECVELCIGELKKANTGLDMADWTLDSALHRSFDISIR 282
Query: 255 RQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSES-----FR-- 307
RQLDP+WH + +TKQ+VSDL LR +L L+ YDAV+++KYLDT+ + S R
Sbjct: 283 RQLDPMWHRVSFRTKQIVSDLSDLRAILHALLTYDAVSFVKYLDTIVTAHSPPPGSTRHN 342
Query: 308 -SVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTS 366
S W+F ++++ +F AK RVY +G K+ N E +S
Sbjct: 343 YSPWLFLDAAHVLFQTAKSRVY-----EG------------------KIGN---ELSRSS 376
Query: 367 STSTKVVLEEVLEEAPKW 384
TS L VLEE PKW
Sbjct: 377 MTSLPTTLRPVLEEQPKW 394
Score = 185 (70.2 bits), Expect = 5.4e-72, Sum P(4) = 5.4e-72
Identities = 35/100 (35%), Positives = 63/100 (63%)
Query: 613 DTAESKDSKPVPPVHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLK 672
D E D + VH + + D+ IL+ ++P I++Y PD +F+R++EVY++ + ++
Sbjct: 584 DIYELYDMDDLVMVHPFDGDMDEHILEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVR 643
Query: 673 VYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIPI 712
VYF++Y S E Q++ + +RRE AF LI++KS M + +
Sbjct: 644 VYFMYYGGSVEEQRYLSAVRREKDAFTKLIKEKSNMAVTL 683
Score = 84 (34.6 bits), Expect = 5.4e-72, Sum P(4) = 5.4e-72
Identities = 32/106 (30%), Positives = 43/106 (40%)
Query: 346 TGKKRKLK-KVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASS 404
T K R + K+ N E +S TS L VLEE PKW +S
Sbjct: 358 TAKSRVYEGKIGN---ELSRSSMTSLPTTLRPVLEEQPKWDVLAEILEEIEMDAYHNPAS 414
Query: 405 REEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSEKVMREEWE 450
GE N+ VL+ C D+ +C QL + + + KV E E
Sbjct: 415 T------GESNN--TVLIMCTDQRTCCQLREYLGTMNTKVEDERQE 452
Score = 51 (23.0 bits), Expect = 5.4e-72, Sum P(4) = 5.4e-72
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 565 IEDKPEISGSGNEGPADEIHSGVVGYSGGMLETAFVEKEVQWKRSLKTDTAESKDSKPV 623
+ED+ + G+E ++ SG V ML E V WKRSL + ++ +KPV
Sbjct: 446 VEDERQEVADGSEDKQEKKRSGEV-----MLRRKLREY-VNWKRSL-VNVNKNLTAKPV 497
Score = 37 (18.1 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 356 DNNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
D +ED+ S +V+L L E WK
Sbjct: 455 DGSEDKQ--EKKRSGEVMLRRKLREYVNWK 482
>UNIPROTKB|Q7RW07 [details] [associations]
symbol:NCU07440 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISS] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=ISS] [GO:0000710 "meiotic mismatch repair"
evidence=ISS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0000736
"double-strand break repair via single-strand annealing, removal of
nonhomologous ends" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
GO:GO:0000736 HOGENOM:HOG000202204 OrthoDB:EOG447K2Q
TIGRFAMs:TIGR00596 KO:K10848 OMA:QQSIVVD EMBL:AABX02000039
RefSeq:XP_964627.2 UniGene:Ncr.20944 ProteinModelPortal:Q7RW07
STRING:Q7RW07 EnsemblFungi:EFNCRT00000007403 GeneID:3880767
KEGG:ncr:NCU07440 Uniprot:Q7RW07
Length = 957
Score = 429 (156.1 bits), Expect = 5.7e-57, Sum P(3) = 5.7e-57
Identities = 90/261 (34%), Positives = 147/261 (56%)
Query: 85 RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN 144
R +Y+ G IF +T RIL+VDLLT L + G+++L+ + S E FI RI + N
Sbjct: 102 REKMYAQGGIFSITSRILVVDLLTNLLNPETITGMLVLHADRIVATSLEAFIFRIYRQKN 161
Query: 145 REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXXXXXXXXXXXXXXX 204
+ +++AFSD P GF+ +M+++F+RK LWPRF V
Sbjct: 162 KVGFLKAFSDNPDPFTVGFSPLATMMRNMFLRKASLWPRFHVQVAQSLEGKKKAEVIELE 221
Query: 205 X-MSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFDEILRRQLDPIWH 262
M+ M IQ AI+E ++ + E++K N +++ED +++ L ++FD ++RRQL+P WH
Sbjct: 222 VPMTDSMREIQTAIMECVEISIHELKKENTGLEMEDWNLDSALTRNFDRMVRRQLEPNWH 281
Query: 263 ILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSES--------FRSVWIFAE 314
+ KTKQ+ DL LR +L L+ DAV++L+ LDT+ + S W+F++
Sbjct: 282 RVSWKTKQIAGDLTVLRGMLQSLLALDAVSFLQQLDTIHAAHKPAPGTTRQTESPWLFSD 341
Query: 315 SSYKIFDYAKKRVYRFTRSDG 335
++ IF+ A++RVY + G
Sbjct: 342 AAQTIFETARQRVYSSKQKAG 362
Score = 197 (74.4 bits), Expect = 5.7e-57, Sum P(3) = 5.7e-57
Identities = 35/92 (38%), Positives = 61/92 (66%)
Query: 619 DSKPVPPVHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFY 678
D + + +H Y + D+ +L+ +KP I++Y PD SF+R++EVY++ + ++VYFL+Y
Sbjct: 580 DMQDLVVIHAYEGDQDEHVLEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYY 639
Query: 679 EDSTEVQKFKAGIRRENGAFESLIRQKSFMMI 710
S E Q++ + +RRE AF LIR+++ M I
Sbjct: 640 GGSVEEQRYLSSVRREKDAFTKLIRERASMSI 671
Score = 66 (28.3 bits), Expect = 5.7e-57, Sum P(3) = 5.7e-57
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 369 STKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDEC 428
ST L+ VLEE PKW + + R++ +G +LV C D
Sbjct: 365 STIESLKPVLEEQPKWAVLADVLEEIDRDLYFEPAVRDD--------SNGTILVMCADTD 416
Query: 429 SCMQLEDCIR 438
+C QL D ++
Sbjct: 417 TCRQLRDYLQ 426
>RGD|1586469 [details] [associations]
symbol:LOC688631 "similar to DNA repair endonuclease XPF (DNA
excision repair protein ERCC-4)" species:10116 "Rattus norvegicus"
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IBA] [GO:0000110 "nucleotide-excision repair
factor 1 complex" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] [GO:0003697 "single-stranded DNA binding"
evidence=IBA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
RGD:1586469 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
GO:GO:0000710 TIGRFAMs:TIGR00596 IPI:IPI00557668
Ensembl:ENSRNOT00000047701 OMA:LYEFIHT Uniprot:F1LWJ0
Length = 789
Score = 457 (165.9 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 107/272 (39%), Positives = 154/272 (56%)
Query: 118 GLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRK 177
G+++ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF++K
Sbjct: 2 GILVYRAHRIIESCQEAFILRLFRQKNKLGFIKAFTDNAVAFDTGFCHVERVMRNLFMKK 61
Query: 178 LHLWPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDV 236
L+LWPRF V M+ M IQ AIL+V++ACLKE++ N ++V
Sbjct: 62 LYLWPRFHVAVNSFLEQHKPEVVEIRVSMTLAMLAIQTAILDVLNACLKELKYHNLSLEV 121
Query: 237 EDLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKY 296
EDL++EN L K FD+ + LDP+WH LG KTK LV DLK LR LL YL +YD VT+L
Sbjct: 122 EDLSLENALGKPFDKTICHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNL 181
Query: 297 LDTLRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLK 353
L++LR +E S W+F ++S +F A+ RVYR V+L+ ++K T +K
Sbjct: 182 LESLRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLSKKTK--TSEKM--- 233
Query: 354 KVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
G TK L VLE PKW+
Sbjct: 234 ---------AGPEEQETKKEL--VLESNPKWE 254
Score = 173 (66.0 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 43/148 (29%), Positives = 78/148 (52%)
Query: 570 EISGSGNEGPAD-EIHSGVVGYSGGMLETAFVE-KEVQWKRSLKTDTAESKDSKPVPPVH 627
++ G+ E P + + + +G E E + + ++ +D A +P+ +H
Sbjct: 369 QVLGTAEEPPEEGAVEEDLHKQTGSSPEVCGGEIQHESFDLNVSSDAAYGILKEPLTIIH 428
Query: 628 FYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTE 683
SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYF Y STE
Sbjct: 429 PLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTE 488
Query: 684 VQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q++ + +E AFE LIR+K+ M++P
Sbjct: 489 EQRYLTALCKEKEAFEKLIREKASMVVP 516
Score = 79 (32.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 38/164 (23%), Positives = 67/164 (40%)
Query: 292 TYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRK 351
T L+YL +F ++ ++ K+F ++ S + +N +++ K
Sbjct: 165 TLLQYLSQYDCV-TFLNLLESLRATEKVFGQNSGWLF-LDASTSMFVNARARVYRVPDVK 222
Query: 352 LKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLD 411
L K ++ G TK L VLE PKW+ + ++E L
Sbjct: 223 LSKKTKTSEKMAGPEEQETKKEL--VLESNPKWEALTEVLKEI------ETENKESEALG 274
Query: 412 GEENDHGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G G VL+ D+ +C QL D + G+E ++ R+ +EK
Sbjct: 275 GP----GQVLICASDDRTCCQLRDYLTAGAEAFLLRLYRKTFEK 314
>POMBASE|SPCC970.01 [details] [associations]
symbol:rad16 "DNA repair endonuclease XPF" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=TAS] [GO:0006311 "meiotic gene
conversion" evidence=IMP] [GO:0007533 "mating type switching"
evidence=IMP] [GO:0007534 "gene conversion at mating-type locus"
evidence=IMP] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 PomBase:SPCC970.01 GO:GO:0005737
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0003677
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006311 GO:GO:0000109 GO:GO:0006296
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:1901255 GO:GO:0007534
EMBL:X71595 PIR:A56213 RefSeq:NP_587855.2 STRING:P36617
EnsemblFungi:SPCC970.01.1 GeneID:2538760 HOGENOM:HOG000202204
OrthoDB:EOG447K2Q NextBio:20799944 TIGRFAMs:TIGR00596
Uniprot:P36617
Length = 877
Score = 430 (156.4 bits), Expect = 5.2e-55, Sum P(3) = 5.2e-55
Identities = 93/273 (34%), Positives = 150/273 (54%)
Query: 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFI 136
T + + R Y G IF +T RIL++DLLT+ +PT + G+++L+ + T FI
Sbjct: 82 TETMSVDKREKSYLEGGIFAITSRILVMDLLTKIIPTEKITGIVLLHADRVVSTGTVAFI 141
Query: 137 CRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXXXXXXX 196
R+ + N+ +I+AFSD P + G ++ LF+R + ++PRF V
Sbjct: 142 MRLYRETNKTGFIKAFSDDPEQFLMGINALSHCLRCLFLRHVFIYPRFHVVVAESLEKSP 201
Query: 197 XXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNK--VDVEDLTVENGLFKSFDEILR 254
+S IQ +L +++ ++E+R+ N +D+ED +E+ L +SFD I+R
Sbjct: 202 ANVVELNVNLSDSQKTIQSCLLTCIESTMRELRRLNSAYLDMEDWNIESALHRSFDVIVR 261
Query: 255 RQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSV----- 309
RQLD +WH + KTKQLV DL TL+ LL LV YD V++LK LDTL +S + S
Sbjct: 262 RQLDSVWHRVSPKTKQLVGDLSTLKFLLSALVCYDCVSFLKLLDTLVLSVNVSSYPSNAQ 321
Query: 310 ---WIFAESSYKIFDYAKKRVYRFTRSDGVELN 339
W+ +++ K+ A+ RVY+ S+G ++
Sbjct: 322 PSPWLMLDAANKMIRVARDRVYK--ESEGPNMD 352
Score = 177 (67.4 bits), Expect = 5.2e-55, Sum P(3) = 5.2e-55
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 626 VHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQ 685
++ Y E D+ +L+ L+P ++++ D +F+R++EVYKA P L+VYF++Y S E Q
Sbjct: 530 IYSYNGERDELVLNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQ 589
Query: 686 KFKAGIRRENGAFESLIRQKSFMMI 710
K+ +RRE +F LI+++S M I
Sbjct: 590 KYLFSVRREKDSFSRLIKERSNMAI 614
Score = 63 (27.2 bits), Expect = 5.2e-55, Sum P(3) = 5.2e-55
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 377 VLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGE-ENDHGIVLVACKDECSCMQLED 435
+LEE PKW E +L D + E + +++ C DE +C+QL D
Sbjct: 356 ILEEQPKWSVLQDVLNEV---------CHETMLADTDAETSNNSIMIMCADERTCLQLRD 406
>RGD|1304845 [details] [associations]
symbol:Ercc4l1 "excision repair cross-complementing rodent
repair deficiency, complementation group 4-like 1" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_003750780
Ncbi:XP_003750828
Length = 876
Score = 451 (163.8 bits), Expect = 5.6e-55, Sum P(2) = 5.6e-55
Identities = 106/271 (39%), Positives = 153/271 (56%)
Query: 119 LIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKL 178
+++ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF++KL
Sbjct: 91 ILVYRAHRIIESCQEAFILRLFRQKNKLGFIKAFTDNAVAFDTGFCHVERVMRNLFMKKL 150
Query: 179 HLWPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVE 237
+LWPRF V M+ M IQ AIL+V++ACLKE++ N ++VE
Sbjct: 151 YLWPRFHVAVNSFLEQHKPEVVEIRVSMTLAMLAIQTAILDVLNACLKELKYHNLSLEVE 210
Query: 238 DLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL 297
DL++EN L K FD+ + LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L
Sbjct: 211 DLSLENALGKPFDKTICHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLL 270
Query: 298 DTLRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKK 354
++LR +E S W+F ++S +F A+ RVYR V+L+ ++K T +K
Sbjct: 271 ESLRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLSKKTK--TSEKM---- 321
Query: 355 VDNNEDEDGGTSSTSTKVVLEEVLEEAPKWK 385
G TK L VLE PKW+
Sbjct: 322 --------AGPEEQETKKEL--VLESNPKWE 342
Score = 173 (66.0 bits), Expect = 5.6e-55, Sum P(2) = 5.6e-55
Identities = 43/148 (29%), Positives = 78/148 (52%)
Query: 570 EISGSGNEGPAD-EIHSGVVGYSGGMLETAFVE-KEVQWKRSLKTDTAESKDSKPVPPVH 627
++ G+ E P + + + +G E E + + ++ +D A +P+ +H
Sbjct: 456 QVLGTAEEPPEEGAVEEDLHKQTGSSPEVCGGEIQHESFDLNVSSDAAYGILKEPLTIIH 515
Query: 628 FYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTE 683
SD +L ++P +V+Y +++FVRQ+E+Y+A P L+VYF Y STE
Sbjct: 516 PLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTE 575
Query: 684 VQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q++ + +E AFE LIR+K+ M++P
Sbjct: 576 EQRYLTALCKEKEAFEKLIREKASMVVP 603
Score = 69 (29.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 38/164 (23%), Positives = 66/164 (40%)
Query: 292 TYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRK 351
T L+YL +F ++ ++ K+F ++ S + +N +++ K
Sbjct: 253 TLLQYLSQYDCV-TFLNLLESLRATEKVFGQNSGWLF-LDASTSMFVNARARVYRVPDVK 310
Query: 352 LKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLD 411
L K ++ G TK L VLE PKW+ + ++E L
Sbjct: 311 LSKKTKTSEKMAGPEEQETKKEL--VLESNPKWEALTEVLKEI------ETENKESEALG 362
Query: 412 GEENDHGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G G VL+ C +C QL D + G+E ++ R+ +EK
Sbjct: 363 GP----GQVLI-CASXRTCCQLRDYLTAGAEAFLLRLYRKTFEK 401
>FB|FBgn0002707 [details] [associations]
symbol:mei-9 "meiotic 9" species:7227 "Drosophila
melanogaster" [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISS;NAS;IMP;TAS] [GO:0006298 "mismatch repair"
evidence=NAS;IMP] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=NAS;TAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0045132 "meiotic chromosome segregation"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP;TAS] [GO:0043234 "protein complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IBA] [GO:0000110 "nucleotide-excision repair
factor 1 complex" evidence=IBA] [GO:0006296 "nucleotide-excision
repair, DNA incision, 5'-to lesion" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0007095
EMBL:AE014298 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0016321 GO:GO:0000712 GO:GO:0000014
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
TIGRFAMs:TIGR00596 GeneTree:ENSGT00390000004394 KO:K10848
OMA:QQSIVVD EMBL:U27181 EMBL:BT001319 PIR:S58936 RefSeq:NP_525068.1
UniGene:Dm.1684 ProteinModelPortal:Q24087 SMR:Q24087 IntAct:Q24087
MINT:MINT-1765400 STRING:Q24087 PaxDb:Q24087
EnsemblMetazoa:FBtr0070656 GeneID:31373 KEGG:dme:Dmel_CG3697
CTD:31373 FlyBase:FBgn0002707 InParanoid:Q24087 OrthoDB:EOG4G1JXB
PhylomeDB:Q24087 GenomeRNAi:31373 NextBio:773308 Bgee:Q24087
GermOnline:CG3697 Uniprot:Q24087
Length = 961
Score = 439 (159.6 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 97/300 (32%), Positives = 169/300 (56%)
Query: 32 KLIASVLLLHSPSQGTXXXXXXXPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91
+++ S+L +S S G + + Q +Y + P E+ + A R +Y
Sbjct: 74 RVVISILKAYSDS-GNLVLVINSSDWEEQ--YYKSKIEPKYVHEVAST--ATERERVYLE 128
Query: 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRA 151
G + F++ RIL+VDLL QR+P ++G+I+L H + E+ E F R+ + N+ +++A
Sbjct: 129 GGLQFISTRILVVDLLKQRIPIELISGIIVLRAHTIIESCQEAFALRLFRQKNKTGFVKA 188
Query: 152 FSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXXXXXXXXXXXXXXXXMSKYMG 211
FS P A G++ ER M++LF++ L++WPRF + +S+ +
Sbjct: 189 FSSSPEAFTIGYSHVERTMRNLFVKHLYIWPRFHESVRTVLQPWKIQSIEMHVPISQNIT 248
Query: 212 GIQKAILEVMDACLKEMRKTNK-VDVEDLTVENGLFKSFDEILRRQLDPIWHILGKKTKQ 270
IQ ILE+M+ ++E+++ N+ VD+E +TVEN + KSF +IL+ QLD IWH L +TK
Sbjct: 249 SIQSHILEIMNFLVQEIKRINRTVDMEAVTVENCVTKSFHKILQAQLDCIWHQLNSQTKL 308
Query: 271 LVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESF--RSVWIFAESSYKIFDYAKKRVY 328
+V+DLK LR L+ + +DAV+ ++ R +E S W +++ +IF +++RV+
Sbjct: 309 IVADLKILRSLMISTMYHDAVSAYAFMKRYRSTEYALSNSGWTLLDAAEQIFKLSRQRVF 368
Score = 147 (56.8 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAEN---PSIKLKVYFLFYEDSTEVQKFKAGIRR 693
+L+ L+P +V+Y+ +++ +RQ+EV++A P+ ++KVYFL + + E Q + +RR
Sbjct: 576 MLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTSLRR 635
Query: 694 ENGAFESLIRQKSFMMIP 711
E AFE +I KS M+IP
Sbjct: 636 EKAAFEFIIDTKSKMVIP 653
Score = 49 (22.3 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 420 VLVACKDECSCMQLEDCIRNGSEKVMREE 448
VL+ C+D +C QL+ + G + + ++
Sbjct: 409 VLILCQDARTCHQLKQYLTQGGPRFLLQQ 437
>DICTYBASE|DDB_G0284419 [details] [associations]
symbol:xpf "DNA excision repair protein 4"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IMP] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS;IBA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISS;IBA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] InterPro:IPR006166 InterPro:IPR020819 Pfam:PF02732
SMART:SM00891 dictyBase:DDB_G0284419 GenomeReviews:CM000153_GR
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
EMBL:AAFI02000064 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110 eggNOG:COG1948
Gene3D:3.40.50.10130 GO:GO:0000710 KO:K10848 OMA:QQSIVVD
RefSeq:XP_638619.1 HSSP:Q92889 ProteinModelPortal:Q54PN5
STRING:Q54PN5 EnsemblProtists:DDB0232364 GeneID:8624590
KEGG:ddi:DDB_G0284419 Uniprot:Q54PN5
Length = 964
Score = 375 (137.1 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 114/404 (28%), Positives = 199/404 (49%)
Query: 72 LPSEITADLPANHRHT-LYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN 130
LP+ + + ++ T +YS G ++F I ++D LT+R+P + ++G+II N H +T+
Sbjct: 78 LPTMVNVETVSSSTKTNMYSKGGVYFGASSIFVLDYLTKRMPCNLVSGIIIQNAHRITDT 137
Query: 131 STETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXX 190
S E + ++ + N++ +I+AF+ +P+ +V K +R MK L ++KL LWPRF +
Sbjct: 138 SIEYLLIKLFRQNNKKGFIKAFTTEPSLLVDEIGKLQRTMKYLHLKKLFLWPRFHQHISL 197
Query: 191 XXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNKVDVEDLTVENGL--FKS 248
M+ M I++++ C+ + NK+ L NG S
Sbjct: 198 ILDKHPPDLVELSIGMTNSMKRIEESLHLNTQRCISSLIAINKLP--RLNGGNGGNDSDS 255
Query: 249 FDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTY---LKYL----DTLR 301
F++IL++QL P+W L +KQLVS +K L +L + L+ YD VT+ L Y+ D+L+
Sbjct: 256 FEQILKQQLKPMWSKLNLHSKQLVSSIKLLNQLKNNLLVYDCVTFYSLLLYIQASSDSLK 315
Query: 302 VSESFRS-------VWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKK 354
S W+ ++ + +F +++RVYRF + LN S+ +KLK
Sbjct: 316 EGLHTNSNYVDEVQPWLESKEAQNLFSASQERVYRFKK-----LN----SLKSPPKKLKT 366
Query: 355 VDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKXXXXXXXXXXXXXXKQASSREEVLLDGEE 414
++N D +SS++ + +L LE+ PKW +E+ D E+
Sbjct: 367 INN--DSSSSSSSSNLEKIL--TLEDNPKWNVLYQIL--------------QEIEEDKEK 408
Query: 415 NDHGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQ 458
G +L+ KDE + QL + G + ++EK L S Q
Sbjct: 409 Q--GTILIFVKDETTVNQLSTYLDYGGYSFLLGKYEK-LCSNQQ 449
Score = 206 (77.6 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 39/92 (42%), Positives = 62/92 (67%)
Query: 624 PP-VHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDST 682
PP + + + ILD ++P I+VY PD+S RQIEVYKAENP +++YF+ Y DS+
Sbjct: 600 PPYIVIHPISKSLTILDEIRPTFIIVYDPDISITRQIEVYKAENPGTPVRLYFMTYSDSS 659
Query: 683 EVQKFKAGIRRENGAFESLIRQKSFMMIPIDQ 714
E ++ + ++RE +FE LIR+K+ ++I +Q
Sbjct: 660 EEYQYISKLQREKSSFEKLIREKTNLIIDTEQ 691
>SGD|S000005943 [details] [associations]
symbol:RAD1 "Single-stranded DNA endonuclease (with Rad10p)"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IDA] [GO:0006312 "mitotic
recombination" evidence=IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0000736 "double-strand break repair via
single-strand annealing, removal of nonhomologous ends"
evidence=IMP] [GO:0000735 "removal of nonhomologous ends"
evidence=IMP] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IPI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 SMART:SM00891 SGD:S000005943
EMBL:BK006949 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0004519 GO:GO:0000712 EMBL:U36624
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710 EMBL:K02070
GO:GO:0000736 HOGENOM:HOG000202204 OrthoDB:EOG447K2Q
TIGRFAMs:TIGR00596 EMBL:M15435 PIR:A26129 RefSeq:NP_015303.1
ProteinModelPortal:P06777 SMR:P06777 DIP:DIP-2424N IntAct:P06777
MINT:MINT-536819 STRING:P06777 PaxDb:P06777 PeptideAtlas:P06777
PRIDE:P06777 EnsemblFungi:YPL022W GeneID:856085 KEGG:sce:YPL022W
CYGD:YPL022w GeneTree:ENSGT00390000004394 KO:K10848 OMA:WPRFRVE
NextBio:981101 Genevestigator:P06777 GermOnline:YPL022W
Uniprot:P06777
Length = 1100
Score = 337 (123.7 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 87/266 (32%), Positives = 136/266 (51%)
Query: 76 ITAD-LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET 134
+TAD L R LY SG I +T RILIVDLL+ + + + G+++LN +L NS E+
Sbjct: 193 VTADSLSIEKRRKLYISGGILSITSRILIVDLLSGIVHPNRVTGMLVLNADSLRHNSNES 252
Query: 135 FICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNXXXXXXX 194
FI I +S N +I+AFS+ P V F+ MK L ++ + LWPRF+V
Sbjct: 253 FILEIYRSKNTWGFIKAFSEAPETFVMEFSPLRTKMKELRLKNVLLWPRFRVEVSSCLNA 312
Query: 195 XXXXXXXXXX----XMSKYMGGIQKAILEVMDACLKEM-RKTNKVDVEDLTVENGLFKSF 249
++ M IQ ++E + C+ E+ RK ++ ++ +EN L +F
Sbjct: 313 TNKTSHNKVIEVKVSLTNSMSQIQFGLMECLKKCIAELSRKNPELALDWWNMENVLDINF 372
Query: 250 DEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKY----LDTLR--VS 303
+ + P WH + ++KQLV D++ LR LL LV DAV + LD + VS
Sbjct: 373 IRSIDSVMVPNWHRISYESKQLVKDIRFLRHLLKMLVTSDAVDFFGEIQLSLDANKPSVS 432
Query: 304 ESF-RSVWIFAESSYKIFDYAKKRVY 328
+ S W+ + + + YAKKR++
Sbjct: 433 RKYSESPWLLVDEAQLVISYAKKRIF 458
Score = 165 (63.1 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 43/133 (32%), Positives = 73/133 (54%)
Query: 576 NEGPADEIHSGVVGYSGGMLE--TAFVEKEVQWKRSLKTDTAESKDSKPVPPVHFYALES 633
++G A E +G + Y G + + T K++ + + + + +D + F +L +
Sbjct: 644 DDGDA-EFDNGELEYVGDLPQHITTHFNKDLWAEHCNEYEYVDRQDEILIST--FKSL-N 699
Query: 634 DQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRR 693
D L + P I+++ PD+SF+RQIEVYKA ++ KVYF++Y +S E Q I+R
Sbjct: 700 DNCSLQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKR 759
Query: 694 ENGAFESLIRQKS 706
E AF LIR+ +
Sbjct: 760 EKDAFTKLIRENA 772
Score = 79 (32.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 69/318 (21%), Positives = 121/318 (38%)
Query: 221 MDACLKEMRKTNKVDVEDLTVENGLFKSFDEI---LRRQLDPIWHILGKKTKQLVSDLKT 277
+ +CL KT+ V ++ V L S +I L L L +K +L D
Sbjct: 306 VSSCLNATNKTSHNKVIEVKVS--LTNSMSQIQFGLMECLKKCIAELSRKNPELALDWWN 363
Query: 278 LRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAESSYKIFD--YAKKRVYRFTRSDG 335
+ +LD + +++ +D++ V R I ES + D + + + SD
Sbjct: 364 MENVLD-------INFIRSIDSVMVPNWHR---ISYESKQLVKDIRFLRHLLKMLVTSDA 413
Query: 336 VELNGQSK-SVTGKKRKL-KKVDNNE----DEDGGTSSTSTKVVL---EEVLEEAPKWKX 386
V+ G+ + S+ K + +K + DE S + K + E LEE PKW+
Sbjct: 414 VDFFGEIQLSLDANKPSVSRKYSESPWLLVDEAQLVISYAKKRIFYKNEYTLEENPKWEQ 473
Query: 387 XXXXXXXXXXXXXKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSEKVMR 446
S E + + G LVAC D +C++L + N S K +
Sbjct: 474 LIHILHDI---------SHERMT----NHLQGPTLVACSDNLTCLELAKVL-NASNK--K 517
Query: 447 EEWEKYLLSKVQLRSVQTXXXXXXXXEPKGYGILDGVAPVKIAQNAEASSVSKQEHD--- 503
+ LL+K++ Q E + A + ++ V+ +
Sbjct: 518 RGVRQVLLNKLKWYRKQREETKKLVKEVQSQDTFPENATLNVSSTFSKEQVTTKRRRTRG 577
Query: 504 -ALLAAASKIRNQGKSDD 520
+ +AA K+RN G + D
Sbjct: 578 ASQVAAVEKLRNAGTNVD 595
Score = 37 (18.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 509 ASKIRNQGKSDDGDN 523
+SKI+N+ + DD ++
Sbjct: 28 SSKIKNEDEPDDSNH 42
>WB|WBGene00008140 [details] [associations]
symbol:C47D12.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR006166 InterPro:IPR020819
SMART:SM00891 GO:GO:0009792 GO:GO:0003697 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712 GO:GO:0000014
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
EMBL:Z69902 GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD
EMBL:AL033535 PIR:B88322 PIR:T18568 PIR:T19998 RefSeq:NP_496498.1
ProteinModelPortal:G5EBZ1 SMR:G5EBZ1 EnsemblMetazoa:C47D12.8
GeneID:174793 KEGG:cel:CELE_C47D12.8 CTD:174793 WormBase:C47D12.8
NextBio:885534 Uniprot:G5EBZ1
Length = 935
Score = 225 (84.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 71/327 (21%), Positives = 141/327 (43%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + +A+ L P +L L+L S + + +S
Sbjct: 24 LLEYERATLAKTL--PASVLFVVANGLGLERLFLEHLILFSDRRLLALVLNTNEHDESYF 81
Query: 62 IHYLAP-NAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
+ L N P I +++ R ++Y G + F + R+L+VDLL R+PT +A +
Sbjct: 82 VSKLKEHNVECDPKVINSEVSIKDRQSIYLEGGVQFCSSRVLLVDLLQNRIPTDRIAAIF 141
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H ++FI R+ + + ++AF+D P ++ S + +R++ L+IR + L
Sbjct: 142 VYRAHQTLNAFQDSFILRLYREKKPDGTVKAFTDFPNSL-SSLGQLQRLVDRLYIRHVEL 200
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMR--KTNKVDVED 238
PRF + + + + I+E + C++++R T+ ++
Sbjct: 201 MPRFSSIIESELNRYQLKTAIFSVDVPTPLRRVHRTIIEFIKVCVRDLRTCSTSGKQTDE 260
Query: 239 LTVENGLFKSFDEILRRQL-DPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL 297
E L ++L D HI +K ++L++D+ +LR++L D T L L
Sbjct: 261 QNEEMIHVPWAATRLEKRLHDRRGHI-SEKQQRLLNDVASLREILQLSENMDVATVLSRL 319
Query: 298 DTLRVSESF---RSVWIFAESSYKIFD 321
L+ + S W+ + S +I +
Sbjct: 320 QVLKNDRTVLEEHSGWLLSPSFNRIME 346
Score = 150 (57.9 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENG 696
+L+ KP IV+Y + +RQIE+Y++ NP+ L VY+L Y +STE ++ I RE
Sbjct: 568 LLETKKPRAIVLYTMSLQTLRQIEIYRSTNPNRSLHVYWLQYTESTEESRYLESINRETM 627
Query: 697 AFESLIRQKSFMMI 710
+FE LIR++ ++I
Sbjct: 628 SFELLIREQGTLLI 641
Score = 47 (21.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 405 REEVLLDGEENDHG----IVLVACKDECSCMQLEDCIRNGSEKVMREEWEK 451
RE +L E+ D G VLV E Q+ D +R G K+ W +
Sbjct: 378 REIKMLPVEKKDRGNDSPSVLVITSSEDLSRQVTDVVRYGINKMKWMTWRQ 428
Score = 45 (20.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 416 DHGIVLVACKDECSCMQLEDCIRNGSEKVMR-EEWE 450
D I L A + ECS +L D + S K + ++W+
Sbjct: 832 DRAISLKADQVECSSQELTDSEASTSTKAKKGKKWK 867
>UNIPROTKB|G5EBZ1 [details] [associations]
symbol:C47D12.8 "Protein C47D12.8" species:6239
"Caenorhabditis elegans" [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IBA] [GO:0003697
"single-stranded DNA binding" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IBA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] InterPro:IPR006166
InterPro:IPR020819 SMART:SM00891 GO:GO:0009792 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712
GO:GO:0000014 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
GO:GO:0000710 EMBL:Z69902 GeneTree:ENSGT00390000004394 KO:K10848
OMA:QQSIVVD EMBL:AL033535 PIR:B88322 PIR:T18568 PIR:T19998
RefSeq:NP_496498.1 ProteinModelPortal:G5EBZ1 SMR:G5EBZ1
EnsemblMetazoa:C47D12.8 GeneID:174793 KEGG:cel:CELE_C47D12.8
CTD:174793 WormBase:C47D12.8 NextBio:885534 Uniprot:G5EBZ1
Length = 935
Score = 225 (84.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 71/327 (21%), Positives = 141/327 (43%)
Query: 2 VLEFHQHIIAELLQEPNXXXXXXXXXXXXPKLIASVLLLHSPSQGTXXXXXXXPNLKSQI 61
+LE+ + +A+ L P +L L+L S + + +S
Sbjct: 24 LLEYERATLAKTL--PASVLFVVANGLGLERLFLEHLILFSDRRLLALVLNTNEHDESYF 81
Query: 62 IHYLAP-NAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
+ L N P I +++ R ++Y G + F + R+L+VDLL R+PT +A +
Sbjct: 82 VSKLKEHNVECDPKVINSEVSIKDRQSIYLEGGVQFCSSRVLLVDLLQNRIPTDRIAAIF 141
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H ++FI R+ + + ++AF+D P ++ S + +R++ L+IR + L
Sbjct: 142 VYRAHQTLNAFQDSFILRLYREKKPDGTVKAFTDFPNSL-SSLGQLQRLVDRLYIRHVEL 200
Query: 181 WPRFQVNXXXXXXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMR--KTNKVDVED 238
PRF + + + + I+E + C++++R T+ ++
Sbjct: 201 MPRFSSIIESELNRYQLKTAIFSVDVPTPLRRVHRTIIEFIKVCVRDLRTCSTSGKQTDE 260
Query: 239 LTVENGLFKSFDEILRRQL-DPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL 297
E L ++L D HI +K ++L++D+ +LR++L D T L L
Sbjct: 261 QNEEMIHVPWAATRLEKRLHDRRGHI-SEKQQRLLNDVASLREILQLSENMDVATVLSRL 319
Query: 298 DTLRVSESF---RSVWIFAESSYKIFD 321
L+ + S W+ + S +I +
Sbjct: 320 QVLKNDRTVLEEHSGWLLSPSFNRIME 346
Score = 150 (57.9 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENG 696
+L+ KP IV+Y + +RQIE+Y++ NP+ L VY+L Y +STE ++ I RE
Sbjct: 568 LLETKKPRAIVLYTMSLQTLRQIEIYRSTNPNRSLHVYWLQYTESTEESRYLESINRETM 627
Query: 697 AFESLIRQKSFMMI 710
+FE LIR++ ++I
Sbjct: 628 SFELLIREQGTLLI 641
Score = 47 (21.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 405 REEVLLDGEENDHG----IVLVACKDECSCMQLEDCIRNGSEKVMREEWEK 451
RE +L E+ D G VLV E Q+ D +R G K+ W +
Sbjct: 378 REIKMLPVEKKDRGNDSPSVLVITSSEDLSRQVTDVVRYGINKMKWMTWRQ 428
Score = 45 (20.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 416 DHGIVLVACKDECSCMQLEDCIRNGSEKVMR-EEWE 450
D I L A + ECS +L D + S K + ++W+
Sbjct: 832 DRAISLKADQVECSSQELTDSEASTSTKAKKGKKWK 867
>GENEDB_PFALCIPARUM|MAL13P1.346 [details] [associations]
symbol:MAL13P1.346 "DNA repair endonuclease"
species:5833 "Plasmodium falciparum" [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR006166 InterPro:IPR020819 SMART:SM00891
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 EMBL:AL844509 InterPro:IPR010994
SUPFAM:SSF47781 Gene3D:3.40.50.10130 KO:K10848
RefSeq:XP_001350398.1 ProteinModelPortal:Q8ID22
EnsemblProtists:MAL13P1.346:mRNA GeneID:813914 KEGG:pfa:MAL13P1.346
EuPathDB:PlasmoDB:PF3D7_1368800 HOGENOM:HOG000281780
ProtClustDB:CLSZ2500791 Uniprot:Q8ID22
Length = 1700
Score = 190 (71.9 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 61/288 (21%), Positives = 129/288 (44%)
Query: 74 SEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE 133
+E D ++ R +Y ++F++ +L++DLLT ++ + G+ I H L N E
Sbjct: 266 TEYIRDQKSHERIEMYIKRGVYFISSNVLLIDLLTFKIIPEIIDGIFICKNHRLIYNMKE 325
Query: 134 TFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQ--VNXXXX 191
FI + + N+ +I+ S+ + + + LF+++++ +PRF ++
Sbjct: 326 IFIIELYRKRNKFGFIKGISNNKKLI--NHQHIVNLAQKLFMKRIYCYPRFHKHIHISLN 383
Query: 192 XXXXXXXXXXXXXXMSKYMGGIQKAILEVMDACLKEMRKTNKVDVEDLTVENGLFKSFDE 251
+ + I++ IL ++ E++K DL N L S +
Sbjct: 384 NKFLQPHIYEINLDIPNVLLKIEENILNILHYLNLEIKKNYNFHDFDL---NPLLYS-EN 439
Query: 252 ILRRQLDPI-WHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVW 310
L+ I L TK+L+ ++ TL +L L YD++ + YL+ L+ ++ +W
Sbjct: 440 AEAYVLNYIKTKTLNYNTKKLLKEIITLVNMLCNLFIYDSLIFYNYLNNLKEADK-ECIW 498
Query: 311 IFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNN 358
++ + +IF +++R +F + +N + T + + DNN
Sbjct: 499 LYCNEANEIFYLSRERNNQFLNQMDILVNQNDINNTQNIINVIQYDNN 546
Score = 47 (21.6 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 641 LKPFVIVVYHPDMSFVRQIEVYKA 664
+KP+ I++ D++ R +E+Y A
Sbjct: 997 IKPYRIILTTLDLNIFRNVEIYCA 1020
Score = 44 (20.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 349 KRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEE 380
K K+KK +D++ +ST TK + ++ ++E
Sbjct: 1505 KNKVKKAKEVDDQN---NSTGTKQIKDKEIQE 1533
Score = 38 (18.4 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 5/44 (11%), Positives = 24/44 (54%)
Query: 671 LKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIPIDQ 714
++V+ +F++++ K+ ++ E + + + ++ + +D+
Sbjct: 1173 VEVFLIFFKNNIHYNKYLNKVKVEKSNWINFLENRNNLRFELDR 1216
Score = 38 (18.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 647 VVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKS 706
V+ + + F + +V K N VY L Y E +++ I ++ + +K
Sbjct: 540 VIQYDNNYFHKSYQVKKESNQLYNW-VYELVYNRDIEKNQYEKIIEQKERIKNKNLMKKK 598
Query: 707 FMM 709
F++
Sbjct: 599 FIL 601
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 497 VSKQEHDALLAAASKIRNQGKSDDGDNPE 525
+ K E D + + N K+DD N +
Sbjct: 1039 IMKYEKDNFIYVKNNENNINKTDDNKNDD 1067
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 337 ELNGQSKSVTGKKRKLKK 354
E+ + + GKK+K KK
Sbjct: 1132 EMKDDNNTFQGKKKKKKK 1149
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 715 627 0.00091 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 620 (66 KB)
Total size of DFA: 327 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.14u 0.12s 51.26t Elapsed: 00:00:02
Total cpu time: 51.14u 0.12s 51.26t Elapsed: 00:00:02
Start: Sat May 11 08:29:10 2013 End: Sat May 11 08:29:12 2013