BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005084
         (715 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
           THROMBIN
 pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
           THROMBIN
 pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
           THROMBIN
 pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
           (ONE Molecule In The Asymmetric Unit)
 pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
           (TWO Molecules In The Asymmetric Unit)
 pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
           (TWO Molecules In The Asymmetric Unit)
 pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
           Complex With The Extracellular Fragment Of Human Par1
 pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
           Complex With The Extracellular Fragment Of Human Par1
          Length = 258

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 594 MLETAFVEKEVQWKRSLKTDTAESKDSKPVP---PVHFYALESDQPILDILK 642
           MLE  +V     W+ +L  D A  K  KPVP    +H   L   Q +  +L+
Sbjct: 80  MLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLR 131


>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
           Extracellular Fragment Of Murine Par3
 pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
           Extracellular Fragment Of Murine Par4
          Length = 258

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 594 MLETAFVEKEVQWKRSLKTDTAESKDSKPVP---PVHFYALESDQPILDILK 642
           MLE  +V     W+ +L  D A  K  KPVP    +H   L   Q +  +L+
Sbjct: 80  MLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLR 131


>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
           Thrombin
          Length = 259

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 594 MLETAFVEKEVQWKRSLKTDTAESKDSKPVP---PVHFYALESDQPILDILK 642
           MLE  +V     W+ +L  D A  K  KPVP    +H   L   Q +  +L+
Sbjct: 80  MLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLR 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,030,162
Number of Sequences: 62578
Number of extensions: 656903
Number of successful extensions: 1458
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 5
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)