BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005084
(715 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1
SV=2
Length = 956
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/723 (63%), Positives = 556/723 (76%), Gaps = 44/723 (6%)
Query: 1 MVLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSS--SPNLK 58
M L++HQ II++LL++ NGGL+ILSSGLSL KLIAS+L+LHSPSQGTLLLL S + +LK
Sbjct: 1 MALKYHQQIISDLLEDSNGGLLILSSGLSLAKLIASLLILHSPSQGTLLLLLSPAAQSLK 60
Query: 59 SQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAG 118
S+IIHY++ P+EITADLPAN R++LY+SG FF+TPRILIVDLLTQR+P S+LAG
Sbjct: 61 SRIIHYISSLDSPTPTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAG 120
Query: 119 LIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKL 178
+ ILN H+++E STE FI RI+KSLN AYIRAFSD+P AMVSGFAKTER M++LF+RK+
Sbjct: 121 IFILNAHSISETSTEAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKI 180
Query: 179 HLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKVDVED 238
HLWPRFQ++VS+ELEREPP VVD+RV MS YM GIQKAI+EVMDACLKEM+KTNKVDV+D
Sbjct: 181 HLWPRFQLDVSQELEREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDD 240
Query: 239 LTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLD 298
LTVE+GLFKSFDEI+RRQLDPIWH LGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LD
Sbjct: 241 LTVESGLFKSFDEIVRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLD 300
Query: 299 TLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNN 358
TLRVSES+RSVW+FAESSYKIFD+AKKRVYR ++ V+ K+ +GKKR K ++
Sbjct: 301 TLRVSESYRSVWLFAESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDS 360
Query: 359 EDEDGGTSST--STKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEEND 416
+ GG ++T +T VV+EEVLEEAPKWKVLRE+LEE +EERLKQA S E D +N+
Sbjct: 361 VEAVGGETATNVATGVVVEEVLEEAPKWKVLREILEETQEERLKQAFSEE----DNSDNN 416
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPKG 476
GIVLVACKDE SCMQLEDCI N +KVMREEWE YLLSK++LRS+QT KKK+ KG
Sbjct: 417 -GIVLVACKDERSCMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKTP-KG 474
Query: 477 YGILDGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDD----GDNPETYYGSKG 532
+GILDGV PV QN+E SSV +QEH+AL+AAAS IR GK+ D +NPE +
Sbjct: 475 FGILDGVVPVTTIQNSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKAS 534
Query: 533 PGRGRGKGRNRNGPACVPQSANKDSKSNSKAAIEDKPEI-SGSGNEGPADEIHSGVVGYS 591
+G+ K P S + +S +K KPEI G NE A+E + +
Sbjct: 535 CTKGKAKKD--------PTSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
Query: 592 GGMLETAFVEKEVQWKRSLKTDTAESKDSKPVPPVHFYALESDQPILDILKPFVIVVYHP 651
+ + +K +PPVHFYALESDQPILDILKP VI+VYHP
Sbjct: 587 NAVRPSG---------------------AKKLPPVHFYALESDQPILDILKPSVIIVYHP 625
Query: 652 DMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
DM FVR++EVYKAENP KLKVYF+FY++STEVQKF+A IRREN AFESLIRQKS M+IP
Sbjct: 626 DMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFESLIRQKSSMIIP 685
Query: 712 IDQ 714
+DQ
Sbjct: 686 VDQ 688
>sp|Q9QZD4|XPF_MOUSE DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3
Length = 917
Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 235/719 (32%), Positives = 363/719 (50%), Gaps = 98/719 (13%)
Query: 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61
+LE+ + + ELL + GLV+ + GL +L+ L LH +L+L++ P +
Sbjct: 15 LLEYERQQVLELLD--SDGLVVCARGLGTDRLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G I F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGIIFATSRILVVDFLTGRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V V+ LE+ P VV++ V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN L K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E S W+F ++S +F A+ RVYR V+LN ++K T +K +V
Sbjct: 313 LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLNKKAK--TSEKTSSPEVQ 367
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEEND 416
+ E VLE PKW+ L +VL+EIE A ++E L G
Sbjct: 368 ETKK--------------ELVLESNPKWEALTDVLKEIE------AENKESEALGGP--- 404
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPKG 476
G VL+ D+ +C QL D + G+E + LR + + +K E
Sbjct: 405 -GRVLICASDDRTCCQLRDYLSAGAETFL-------------LRLYRKTFEKDGKAEEVW 450
Query: 477 YGILDGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDDGDNPETYYGSKGPGRG 536
+ G P + ++ + AA +K R K RG
Sbjct: 451 VNVRKGDGPKRTTKSDKRPK----------AAPNKERASAK-----------------RG 483
Query: 537 RGKGRNRNGPACVPQSANKDSKSNSKAAIEDKPEISGSGNEGPADEIHSGVVGYSGGMLE 596
R + + + KA ED + S EG EI
Sbjct: 484 APLKRKKQELTLTQVLGSAEEPPEDKALEEDLCRQTSSSPEGCGVEI------------- 530
Query: 597 TAFVEKEVQWKRSLKTDTAESKDSKPVPPVHFYALESD----QPILDILKPFVIVVYHPD 652
K + ++ +D A +P+ +H SD +L ++P +V+Y +
Sbjct: 531 -----KRESFDLNVSSDAAYGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAE 585
Query: 653 MSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
++FVRQ+E+Y+A P L+VYFL Y STE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 586 LTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVP 644
>sp|Q9QYM7|XPF_CRIGR DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2
SV=3
Length = 913
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/459 (38%), Positives = 265/459 (57%), Gaps = 43/459 (9%)
Query: 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61
+LE+ + ++ ELL + GLV+ + GL +L+ L LH +L+L++ P +
Sbjct: 15 LLEYERQLVLELLD--SDGLVVCARGLGADRLLYHFLRLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G I F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITSNSRYEVYTQGGIIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V V+ LE+ P VV++ V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPAMLSIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN L K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENALGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSESF---RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E S W+F ++S +F A+ RVYR V+LN KK
Sbjct: 313 LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVP---DVKLN-------------KKAK 356
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEEND 416
+E +G + E VLE PKW+ L EVL+EIE A ++E L G
Sbjct: 357 MSESAEGQETKK------ELVLESNPKWEALSEVLKEIE------AENKESEALGGP--- 401
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G VL+ D+ +C QL D + G+E ++ R+ +EK
Sbjct: 402 -GQVLICASDDRTCCQLRDYLTAGAEAFLLRLYRKTFEK 439
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 609 SLKTDTAESKDSKPVPPVHFYALESD----QPILDILKPFVIVVYHPDMSFVRQIEVYKA 664
+L +D+A +P+ +H SD +L ++P +V+Y +++FVRQ+E+Y+A
Sbjct: 534 NLSSDSAYGILKEPLTIIHPLVGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRA 593
Query: 665 ENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
P L+VYFL Y STE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 594 SRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVP 640
>sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3
Length = 916
Score = 299 bits (766), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 267/459 (58%), Gaps = 40/459 (8%)
Query: 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61
+LE+ + ++ ELL GLV+ + GL +L+ L LH +L+L++ P +
Sbjct: 15 LLEYERQLVLELLD--TDGLVVCARGLGADRLLYHFLQLHCHPACLVLVLNTQPAEEEYF 72
Query: 62 IHYLA-PNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
I+ L LP +T ++ +N R+ +Y+ G + F T RIL+VD LT R+P+ + G++
Sbjct: 73 INQLKIEGVEHLPRRVTNEITSNSRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGIL 132
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H + E+ E FI R+ + N+ +I+AF+D A +GF ER+M++LF+RKL+L
Sbjct: 133 VYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYL 192
Query: 181 WPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTN-KVDVEDL 239
WPRF V V+ LE+ P VV++ V M+ M IQ AIL++++ACLKE++ N ++VEDL
Sbjct: 193 WPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAILDILNACLKELKCHNPSLEVEDL 252
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
++EN + K FD+ +R LDP+WH LG KTK LV DLK LR LL YL +YD VT+L L++
Sbjct: 253 SLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES 312
Query: 300 LRVSE-SF--RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVD 356
LR +E +F S W+F +SS +F A+ RVY + ++ K++ +K++
Sbjct: 313 LRATEKAFGQNSGWLFLDSSTSMFINARARVYHLPDA----------KMSKKEKISEKME 362
Query: 357 NNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEEND 416
E E+ E VLE PKW+ L EVL+EIE A ++E L G
Sbjct: 363 IKEGEETKK---------ELVLESNPKWEALTEVLKEIE------AENKESEALGGP--- 404
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSE----KVMREEWEK 451
G VL+ D+ +C QL D I G+E ++ R+ +EK
Sbjct: 405 -GQVLICASDDRTCSQLRDYITLGAEAFLLRLYRKTFEK 442
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 602 KEVQWKRSLKTDTAESKDSKPVPPVHFYALESD----QPILDILKPFVIVVYHPDMSFVR 657
K ++ +L +D A +P+ +H SD +L ++P +V+Y +++FVR
Sbjct: 530 KHEEFDVNLSSDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVR 589
Query: 658 QIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIP 711
Q+E+Y+A P L+VYFL Y STE Q++ +R+E AFE LIR+K+ M++P
Sbjct: 590 QLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVP 643
>sp|P36617|RAD16_SCHPO DNA repair protein rad16 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad16 PE=1 SV=2
Length = 877
Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 158/505 (31%), Positives = 255/505 (50%), Gaps = 66/505 (13%)
Query: 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQII 62
L + Q + EL++E GL +++ GLSL ++ A+VL + LLL+ ++ + I
Sbjct: 9 LAYQQQVFNELIEE--DGLCVIAPGLSLLQIAANVLSYFAVPGSLLLLVGANVDDIELIQ 66
Query: 63 HYLAPN-APLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLII 121
H + + L + T + + R Y G IF +T RIL++DLLT+ +PT + G+++
Sbjct: 67 HEMESHLEKKLITVNTETMSVDKREKSYLEGGIFAITSRILVMDLLTKIIPTEKITGIVL 126
Query: 122 LNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLW 181
L+ + T FI R+ + N+ +I+AFSD P + G ++ LF+R + ++
Sbjct: 127 LHADRVVSTGTVAFIMRLYRETNKTGFIKAFSDDPEQFLMGINALSHCLRCLFLRHVFIY 186
Query: 182 PRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNK--VDVEDL 239
PRF V V+E LE+ P VV++ V +S IQ +L +++ ++E+R+ N +D+ED
Sbjct: 187 PRFHVVVAESLEKSPANVVELNVNLSDSQKTIQSCLLTCIESTMRELRRLNSAYLDMEDW 246
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
+E+ L +SFD I+RRQLD +WH + KTKQLV DL TL+ LL LV YD V++LK LDT
Sbjct: 247 NIESALHRSFDVIVRRQLDSVWHRVSPKTKQLVGDLSTLKFLLSALVCYDCVSFLKLLDT 306
Query: 300 LRVSESFRSV--------WIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRK 351
L +S + S W+ +++ K+ A+ RVY+ S+G ++
Sbjct: 307 LVLSVNVSSYPSNAQPSPWLMLDAANKMIRVARDRVYK--ESEGPNMDAIP--------- 355
Query: 352 LKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLD 411
+LEE PKW VL++VL E+ E + + D
Sbjct: 356 -------------------------ILEEQPKWSVLQDVLNEVCHETMLADT-------D 383
Query: 412 GEENDHGIVLVACKDECSCMQLEDCI------RNGSEKVMREEWEKYLLSKVQLRSVQTS 465
E +++ I ++ C DE +C+QL D + S K M + Y + Q R + S
Sbjct: 384 AETSNNSI-MIMCADERTCLQLRDYLSTVTYDNKDSLKNMNSKLVDYFQWREQYRKMSKS 442
Query: 466 SKK---KKSKEPKGYGILDGVAPVK 487
KK K +E GV P K
Sbjct: 443 IKKPEPSKEREASNTTSRKGVPPSK 467
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 626 VHFYALESDQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQ 685
++ Y E D+ +L+ L+P ++++ D +F+R++EVYKA P L+VYF++Y S E Q
Sbjct: 530 IYSYNGERDELVLNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQ 589
Query: 686 KFKAGIRRENGAFESLIRQKSFMMI 710
K+ +RRE +F LI+++S M I
Sbjct: 590 KYLFSVRREKDSFSRLIKERSNMAI 614
>sp|P06777|RAD1_YEAST DNA repair protein RAD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD1 PE=1 SV=1
Length = 1100
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 188/655 (28%), Positives = 298/655 (45%), Gaps = 99/655 (15%)
Query: 76 ITAD-LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET 134
+TAD L R LY SG I +T RILIVDLL+ + + + G+++LN +L NS E+
Sbjct: 193 VTADSLSIEKRRKLYISGGILSITSRILIVDLLSGIVHPNRVTGMLVLNADSLRHNSNES 252
Query: 135 FICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194
FI I +S N +I+AFS+ P V F+ MK L ++ + LWPRF+V VS L
Sbjct: 253 FILEIYRSKNTWGFIKAFSEAPETFVMEFSPLRTKMKELRLKNVLLWPRFRVEVSSCLNA 312
Query: 195 EPPV----VVDVRVPMSKYMGGIQKAILEVMDACLKEM-RKTNKVDVEDLTVENGLFKSF 249
V++V+V ++ M IQ ++E + C+ E+ RK ++ ++ +EN L +F
Sbjct: 313 TNKTSHNKVIEVKVSLTNSMSQIQFGLMECLKKCIAELSRKNPELALDWWNMENVLDINF 372
Query: 250 DEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLK----YLDTLRVSES 305
+ + P WH + ++KQLV D++ LR LL LV DAV + LD + S S
Sbjct: 373 IRSIDSVMVPNWHRISYESKQLVKDIRFLRHLLKMLVTSDAVDFFGEIQLSLDANKPSVS 432
Query: 306 FR---SVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDED 362
+ S W+ + + + YAKKR++
Sbjct: 433 RKYSESPWLLVDEAQLVISYAKKRIFYKN------------------------------- 461
Query: 363 GGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLV 422
E LEE PKW+ L +L +I ER+ G LV
Sbjct: 462 ------------EYTLEENPKWEQLIHILHDISHERMTNHL-------------QGPTLV 496
Query: 423 ACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPKGYGILDG 482
AC D +C++L + N S K + + LL+K++ Q KK KE +
Sbjct: 497 ACSDNLTCLELAKVL-NASNK--KRGVRQVLLNKLKWYRKQREETKKLVKEVQSQDTFPE 553
Query: 483 VAPVKIAQNAEASSVSKQEH----DALLAAASKIRNQGKSDD-----GDNPETYYGSKGP 533
A + ++ V+ + + +AA K+RN G + D D+ + KG
Sbjct: 554 NATLNVSSTFSKEQVTTKRRRTRGASQVAAVEKLRNAGTNVDMEVVFEDHKLSEEIKKGS 613
Query: 534 GRGRGKGRNRNGPACVPQSANKDSKSNSKAAIEDKPEISGSGNEGPADEIHSGVVGYSGG 593
G G+ N A DSK E++ I ++G A E +G + Y G
Sbjct: 614 GDDLDDGQEEN--------AANDSKIFEIQEQENEILI----DDGDA-EFDNGELEYVGD 660
Query: 594 MLE--TAFVEKEVQWKRSLKTDTAESKDSKPVPPVHFYALESDQPILDILKPFVIVVYHP 651
+ + T K++ + + + + +D + F +L +D L + P I+++ P
Sbjct: 661 LPQHITTHFNKDLWAEHCNEYEYVDRQDEILIST--FKSL-NDNCSLQEMMPSYIIMFEP 717
Query: 652 DMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKS 706
D+SF+RQIEVYKA ++ KVYF++Y +S E Q I+RE AF LIR+ +
Sbjct: 718 DISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDAFTKLIRENA 772
>sp|Q24087|XPF_DROME DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9
PE=2 SV=2
Length = 961
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 250/480 (52%), Gaps = 63/480 (13%)
Query: 1 MVLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQ 60
++L++ + + +L++ GL++ + GLS +++ S+L +S S G L+L+ +S + + Q
Sbjct: 45 VLLDYEKQMFLDLVEA--DGLLVCAKGLSYDRVVISILKAYSDS-GNLVLVINSSDWEEQ 101
Query: 61 IIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
+Y + P E+ + A R +Y G + F++ RIL+VDLL QR+P ++G+I
Sbjct: 102 --YYKSKIEPKYVHEVAST--ATERERVYLEGGLQFISTRILVVDLLKQRIPIELISGII 157
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+L H + E+ E F R+ + N+ +++AFS P A G++ ER M++LF++ L++
Sbjct: 158 VLRAHTIIESCQEAFALRLFRQKNKTGFVKAFSSSPEAFTIGYSHVERTMRNLFVKHLYI 217
Query: 181 WPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDL 239
WPRF +V L+ +++ VP+S+ + IQ ILE+M+ ++E+++ N+ VD+E +
Sbjct: 218 WPRFHESVRTVLQPWKIQSIEMHVPISQNITSIQSHILEIMNFLVQEIKRINRTVDMEAV 277
Query: 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDT 299
TVEN + KSF +IL+ QLD IWH L +TK +V+DLK LR L+ + +DAV+ ++
Sbjct: 278 TVENCVTKSFHKILQAQLDCIWHQLNSQTKLIVADLKILRSLMISTMYHDAVSAYAFMKR 337
Query: 300 LRVSESF--RSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDN 357
R +E S W +++ +IF +++RV+ NGQ
Sbjct: 338 YRSTEYALSNSGWTLLDAAEQIFKLSRQRVF----------NGQQ--------------- 372
Query: 358 NEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVL-EEIEEERLKQASSREEVLLDGEEND 416
E E PKW+ L ++L +EI + + S ++
Sbjct: 373 -----------------EFEPEPCPKWQTLTDLLTKEIPGDMRRSRRSEQQ--------- 406
Query: 417 HGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPKG 476
VL+ C+D +C QL+ + G + + ++ ++ + +L + +S PK
Sbjct: 407 -PKVLILCQDARTCHQLKQYLTQGGPRFLLQQALQHEVPVGKLSDNYAKESQTRSAPPKN 465
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 637 ILDILKPFVIVVYHPDMSFVRQIEVYKAEN---PSIKLKVYFLFYEDSTEVQKFKAGIRR 693
+L+ L+P +V+Y+ +++ +RQ+EV++A P+ ++KVYFL + + E Q + +RR
Sbjct: 576 MLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTSLRR 635
Query: 694 ENGAFESLIRQKSFMMIP 711
E AFE +I KS M+IP
Sbjct: 636 EKAAFEFIIDTKSKMVIP 653
>sp|Q54PN5|XPF_DICDI DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4
PE=3 SV=1
Length = 964
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 247/474 (52%), Gaps = 54/474 (11%)
Query: 1 MVLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN--LK 58
M LEF++ I + L + GLV++ SGL + +I L +S + +L L N L+
Sbjct: 1 MSLEFYKQIFEDCLND--DGLVVMGSGLGIHNIILGFLKFYSDTDDLVLFLDCQSNESLQ 58
Query: 59 SQIIHY------LAPNAPLLPSEITAD-LPANHRHTLYSSGQIFFVTPRILIVDLLTQRL 111
+ + Y LP+ + + + ++ + +YS G ++F I ++D LT+R+
Sbjct: 59 NSYLFYHERLLNFGIKYSNLPTMVNVETVSSSTKTNMYSKGGVYFGASSIFVLDYLTKRM 118
Query: 112 PTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMK 171
P + ++G+II N H +T+ S E + ++ + N++ +I+AF+ +P+ +V K +R MK
Sbjct: 119 PCNLVSGIIIQNAHRITDTSIEYLLIKLFRQNNKKGFIKAFTTEPSLLVDEIGKLQRTMK 178
Query: 172 SLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKT 231
L ++KL LWPRF ++S L++ PP +V++ + M+ M I++++ C+ +
Sbjct: 179 YLHLKKLFLWPRFHQHISLILDKHPPDLVELSIGMTNSMKRIEESLHLNTQRCISSLIAI 238
Query: 232 NKVDVEDLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAV 291
NK+ + SF++IL++QL P+W L +KQLVS +K L +L + L+ YD V
Sbjct: 239 NKLPRLNGGNGGNDSDSFEQILKQQLKPMWSKLNLHSKQLVSSIKLLNQLKNNLLVYDCV 298
Query: 292 TYLKYLDTLRV-SESFR-------------SVWIFAESSYKIFDYAKKRVYRFTRSDGVE 337
T+ L ++ S+S + W+ ++ + +F +++RVYRF + +
Sbjct: 299 TFYSLLLYIQASSDSLKEGLHTNSNYVDEVQPWLESKEAQNLFSASQERVYRFKKLN--- 355
Query: 338 LNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEEE 397
S+ +KLK ++N D +SS++ + +L LE+ PKW VL ++L+EIEE+
Sbjct: 356 ------SLKSPPKKLKTINN--DSSSSSSSSNLEKIL--TLEDNPKWNVLYQILQEIEED 405
Query: 398 RLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEK 451
+ KQ G +L+ KDE + QL + G + ++EK
Sbjct: 406 KEKQ----------------GTILIFVKDETTVNQLSTYLDYGGYSFLLGKYEK 443
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm
PE=1 SV=3
Length = 2021
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 29/236 (12%)
Query: 21 LVILSSGLSLPKLIASVLLLHS----PSQGTLLLLSSSPNLKSQI---IHYLA-PNAPLL 72
LV L +GL IA+V++ + PS + + + P + Q+ H + P + +
Sbjct: 96 LVCLPTGLG-KTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVMGIPQSHM- 153
Query: 73 PSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENST 132
+E+T A +R ++SS ++ F+TP++++ DL +P +++ L++ H N
Sbjct: 154 -AEMTGSTQAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPATHVKCLVVDEAHKALGNYA 212
Query: 133 ETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEEL 192
+ R + I A S P S ++++ +L I K+ L SEE
Sbjct: 213 YCQVVRELVKYTTHFRILALSATPG---SDIKAVQQVITNLLIGKIELR-------SEES 262
Query: 193 EREPPVVVDVR-----VPMSKYMGGIQKAILEVMDACLKEMRKTN---KVDVEDLT 240
P + R VP+ + +G IQK +++++ + N K D+ +LT
Sbjct: 263 PDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVLMKRDIPNLT 318
>sp|Q9UT23|MFH1_SCHPO ATP-dependent DNA helicase mfh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mfh1 PE=3 SV=2
Length = 834
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 105/236 (44%), Gaps = 36/236 (15%)
Query: 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPL--------- 71
LV L +GL IA+V++++ L P KS I+ ++AP PL
Sbjct: 90 LVALPTGLG-KTFIAAVVMMN--------YLRWFP--KSYIV-FMAPTKPLVTQQMEACY 137
Query: 72 ----LPSEITADL----PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILN 123
+P TA+L P R+ Y S +FFVTP+ ++ D+ + ++ L+I
Sbjct: 138 KITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDE 197
Query: 124 THALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPR 183
H T N + ++ N+ I A S P + + ++ SL I ++ +
Sbjct: 198 AHRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEAI---QNVIDSLHISRIEIRTE 254
Query: 184 FQVNVSEELEREPPVVVDVR-VPMSKYMGGIQKAILEVMDACLKEMRKTNKVDVED 238
+++S+ ++++ VD V +S + I+ +++ L+++ K N +++
Sbjct: 255 NSIDISQYVQKKE---VDFFPVDLSAEITDIRDRFSSILEPMLQKLNKGNYYRIQN 307
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2
Length = 2048
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 21 LVILSSGLSLPKLIASVLLLHS----PSQGTLLLLSSSPNLKSQI-IHYLAPNAPLLP-S 74
LV L +GL IA+V++ + PS + + + P + QI Y P +
Sbjct: 108 LVCLPTGLG-KTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMA 166
Query: 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET 134
E+T A+ R ++ S ++ F+TP++++ DL P + + L+I H N
Sbjct: 167 EMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYC 226
Query: 135 FICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNV-SEELE 193
+ R + I A S P + + ++++ +L I ++ L ++ + E
Sbjct: 227 QVVRELVKYTNHFRILALSATPGSDIKA---VQQVITNLLIGQIELRSEDSPDILTYSHE 283
Query: 194 REPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTN---KVDVEDLT 240
R+ V + VP+ + + IQK ++++++ + + + N + D+ +LT
Sbjct: 284 RK---VEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRRDIPNLT 330
>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=MPH1 PE=3 SV=1
Length = 1187
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITA-- 78
LV L +GL IAS ++L+ L P S+II ++AP PL+ +I A
Sbjct: 154 LVALPTGLG-KTFIASTVMLN--------FLRWFP--ISKII-FMAPTRPLVAQQIKACC 201
Query: 79 --------------DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNT 124
D +R +++S Q+FF TP+++ DL + + ++A L+I
Sbjct: 202 SIAGIPSSKVAILLDKTRRNRAEIWNSRQVFFTTPQVVENDLASGVVNPKSIALLVIDEA 261
Query: 125 HALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRF 184
H N + + + I + I A + P + V G ++I+ +L I K+ +
Sbjct: 262 HRAKGNYSYNNVVKFINRFSDSYRILALTATPASDVEG---VQQIIDNLNISKVEVRTEQ 318
Query: 185 QVNVSEELERE 195
+++ ++R+
Sbjct: 319 SIDIVRHMKRK 329
>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MPH1 PE=1 SV=1
Length = 993
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 58 KSQIIHYLAPNAPL-------------LPSEITA---DLPANHRHTLYSSGQIFFVTPRI 101
K++II + AP PL +PS+ TA D +R ++++ ++FF TP++
Sbjct: 130 KAKII-FTAPTRPLVAQQIKACLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQV 188
Query: 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVS 161
+ DL L ++ L+I H T +S T + + I N + A + P + +
Sbjct: 189 VENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNSSYRLLALTATPASDLE 248
Query: 162 GFAKTERIMKSLFIRKLHL 180
G + ++ +L I K+ +
Sbjct: 249 G---VQEVVNNLDISKIEI 264
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1505 PE=3 SV=2
Length = 778
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 42/274 (15%)
Query: 5 FHQHIIAELLQEPNGGLVILSSGLSLPKL----IASVLLLHSPSQGTLLLLSSSPNLKSQ 60
+ Q I A L++ L +LS+GL + IA +L + G +L+L+ S L Q
Sbjct: 18 YQQIIAANALKKKT--LCVLSTGLGKTAIAILVIAGIL---TKKDGKVLILAPSRPLVEQ 72
Query: 61 IIHYLAPNAPLLPSE-----ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSN 115
HY L E +T + R LY G+IF TP+++ D++ R+
Sbjct: 73 --HYNRLKQVLNIDEDKIIALTGKIQPKKRAELYKKGKIFIATPQVIENDIIAGRINVDE 130
Query: 116 LAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFI 175
LI H T + F+ K + +I + P S K I ++L I
Sbjct: 131 FILLIADEAHHTTGDHAYAFVA---KKFKDKCHILGLTASPG---SDIDKVMEICENLGI 184
Query: 176 RKLHLWPRFQVNVSEELEREPPVVVDVR-VPMSKYMGGIQKAILEVMDACLKEMRKTNK- 233
H+ R +E+ E P + V+ +P+ + K L++++ LKE K K
Sbjct: 185 E--HVEVR-----TEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILKD 237
Query: 234 -------VDV---EDLTVENGLFKSFDEILRRQL 257
DV E + + N LF S+DE ++ +L
Sbjct: 238 AGVINSIADVTKTELIELNNKLF-SYDEEVKYEL 270
>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=MPH1 PE=3 SV=3
Length = 1050
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITA-- 78
LV L +GL IAS ++L+ L P +S++I ++AP PL+ +I A
Sbjct: 105 LVALPTGLG-KTFIASTVMLN--------FLRWFP--ESKMI-FVAPTKPLVAQQIKACC 152
Query: 79 --------------DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNT 124
D +R ++ Q+FF TP+++ DL + + +A L+I
Sbjct: 153 SITGIPSSKVAILLDKTRKNRGEIWDEKQVFFTTPQVVENDLASGLVDPKTIALLVIDEA 212
Query: 125 HALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRF 184
H N I + + I A + P + V G + I+ +L I K+ +
Sbjct: 213 HRAKGNYAYNNIVKFMDRFTNSYRILALTATPASDVDG---VQEIIDNLNISKVEVRSEE 269
Query: 185 QVNVSEELERE 195
+++ + ++R+
Sbjct: 270 SIDIIKYMKRK 280
>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent RNA helicase mfh2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mfh2 PE=3 SV=1
Length = 783
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 21 LVILSSGLSLPKLIASVLLLHS----PSQGTLLLLSSSPNLKSQIIHY--LAPNAPLLPS 74
L+ L +GL IA+V++L+ P + L + P L Q + +A +P +
Sbjct: 128 LLALPTGLG-KTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQQRVACSNVAGMSPGATA 186
Query: 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET 134
E+ ++ + R Y++ ++FF+TP+ L DL L ++ LI H T N +
Sbjct: 187 ELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYA 246
Query: 135 FICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKL 178
+ R + N + + P S A ++++ L I KL
Sbjct: 247 QVMRAVLRSNSHFRVLGLTATPG---SSTASVQKVVDCLHISKL 287
>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=MPH1 PE=3 SV=1
Length = 993
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 58 KSQIIHYLAPNAPL-------------LPSEITA---DLPANHRHTLYSSGQIFFVTPRI 101
K++II + AP PL +PS+ TA D +R ++++ ++FF TP++
Sbjct: 130 KAKII-FTAPTRPLVAQQIKACLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQV 188
Query: 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVS 161
+ DL L ++ L+I H T + T + + I N + A + P + +
Sbjct: 189 VENDLKRGVLDPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFNSSYRLLALTATPASDLE 248
Query: 162 GFAKTERIMKSLFIRKLHL 180
G + ++ +L I K+ +
Sbjct: 249 G---VQEVVNNLDISKIEI 264
>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides immitis (strain RS)
GN=MPH1 PE=3 SV=1
Length = 1110
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 21 LVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE--- 75
LV L +GL + A+V+L H ++ ++ + L SQ + A + S+
Sbjct: 341 LVALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQVDACFHIAGIPRSQTTL 400
Query: 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF 135
+T + P R + S ++FF+TP+ ++ DL T + L++ H T
Sbjct: 401 LTGNTPPGVRAEEWRSKRVFFMTPQTIMNDLKTGIADPKRIVLLVVDEAHRATGAYAYVE 460
Query: 136 ICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
I + ++ N + A + P A V + ++ L I ++ +
Sbjct: 461 IVKFLQRFNNSFRVLALTATPGATVEA---VQEVIDGLSISRIEI 502
>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MPH1 PE=3 SV=2
Length = 1105
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 9/180 (5%)
Query: 21 LVILSSGLSLPKLIASVLLLHSPS---QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEIT 77
LV L +GL IAS ++L+ +G ++ ++ + L +Q I + SE+
Sbjct: 104 LVALPTGLG-KTFIASTVMLNFTRWFPRGKIIFMAPTKPLVAQQIKACCGITGIPTSEVA 162
Query: 78 A--DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF 135
D +R ++ S +FF TP+++ DL + + L+I H N
Sbjct: 163 ILLDKSRRNRADIWDSKTVFFTTPQVVENDLTAGIIDPKEVVLLVIDEAHKSKGNYAYNN 222
Query: 136 ICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELERE 195
+ + I N I A + P + V G + I+ +L I K+ + +++++ ++++
Sbjct: 223 VVKFITRFNISFRILALTATPASDVEG---VQEIIDNLSISKVEVRTEQSIDITKYMKQK 279
>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MPH1 PE=3 SV=1
Length = 1052
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 58 KSQIIHYLAPNAPLLPSEITA----------------DLPANHRHTLYSSGQIFFVTPRI 101
K+ I + AP PL+ +I A D +R ++++ ++FF TP++
Sbjct: 124 KTAKIIFTAPTRPLVAQQIKACLGITGIPHDQTAILLDKTRKNREEIWANKRVFFTTPQV 183
Query: 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVS 161
+ DL L ++ L+I H T + + + I N + A + P +
Sbjct: 184 VENDLKRGVLNPKDIVCLVIDEAHRATGSYAYANLVKFINRFNSSYRLLALTATPATDIE 243
Query: 162 GFAKTERIMKSLFIRKLHL 180
G + ++ +L I K+ +
Sbjct: 244 G---VQEVVNNLNISKIEI 259
>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=MPH1 PE=3 SV=2
Length = 1002
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 58 KSQIIHYLAPNAPLLPSEITA----------------DLPANHRHTLYSSGQIFFVTPRI 101
KS I + AP PL+ +I A D +R ++ ++FF TP++
Sbjct: 143 KSSKIIFTAPTRPLVAQQIKACLGITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQV 202
Query: 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVS 161
+ DL L ++ L+I H N + + I N + A + P A +
Sbjct: 203 VENDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFIDRFNTSYRLLALTATPAADLE 262
Query: 162 GFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDV 202
G + ++ +L I K+ L ++V+ + R ++++
Sbjct: 263 G---VQEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEI 300
>sp|Q75AA7|MPH1_ASHGO ATP-dependent DNA helicase MPH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MPH1
PE=3 SV=2
Length = 1077
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 62 IHYLAPNAPLLPSEITADL-----PAN-----------HRHTLYSSGQIFFVTPRILIVD 105
I + AP PL+ +I A L P N HR ++S ++FF TP+++ D
Sbjct: 138 IIFTAPTRPLVAQQIKACLGITGIPYNDTAILLDKSRKHREQIWSEKRVFFATPQVVEND 197
Query: 106 LLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAK 165
L L ++ L+I H + + + I N + A + P + G
Sbjct: 198 LKRGALNPKDVVLLVIDEAHRARGSYAYVELTKFIDRFNTSYRVLALTATPATDLEG--- 254
Query: 166 TERIMKSLFIRKLHL 180
+ ++ +L I K+ L
Sbjct: 255 VQEVVDNLQISKIEL 269
>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase MPH1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mph1
PE=3 SV=1
Length = 1111
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 58 KSQIIHYLAPNAPLLPSEITA-----DLPANHRHTL------------YSSGQIFFVTPR 100
KS I ++AP PL+ +I+A +P + L + S ++FF+TP+
Sbjct: 341 KSAQIIFVAPTKPLVAQQISACFQVAGIPRSQTTMLTGEAAPGIRAEEWKSKRVFFMTPQ 400
Query: 101 ILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160
L+ DL + + L++ H T + + +K N+ + A + P + V
Sbjct: 401 TLVNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTV 460
Query: 161 S---------GFAKTE-RIMKSLFIRK 177
G AK E R +SL IR+
Sbjct: 461 ESVQAVIDGLGIAKVEIRTEQSLDIRE 487
>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mph1
PE=3 SV=1
Length = 1101
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 58 KSQIIHYLAPNAPLLPSEITA-----DLPANHRHTL------------YSSGQIFFVTPR 100
KS I ++AP PL+ +I+A +P + L + S ++FF+TP+
Sbjct: 331 KSAQIIFVAPTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQ 390
Query: 101 ILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160
L+ DL + + L++ H T + + +K N+ + A + P + V
Sbjct: 391 TLVNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTV 450
Query: 161 S---------GFAKTE-RIMKSLFIRK 177
G AK E R +SL IR+
Sbjct: 451 ESVQAIIDDLGIAKVEIRTEQSLDIRE 477
>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=mph1 PE=3 SV=1
Length = 1101
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 58 KSQIIHYLAPNAPLLPSEITA-----DLPANHRHTL------------YSSGQIFFVTPR 100
KS I ++AP PL+ +I+A +P + L + S ++FF+TP+
Sbjct: 331 KSAQIIFVAPTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQ 390
Query: 101 ILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160
L+ DL + + L++ H T + + +K N+ + A + P + V
Sbjct: 391 TLVNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTV 450
Query: 161 S---------GFAKTE-RIMKSLFIRK 177
G AK E R +SL IR+
Sbjct: 451 ESVQAIIDDLGIAKVEIRTEQSLDIRE 477
>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=mph1 PE=3 SV=1
Length = 1235
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 18 NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEI- 76
N LV L +GL + A+++L ++ SQI+ ++AP PL+ ++
Sbjct: 279 NNLLVALPTGLGKTFIAATIML-------NFFRWTTD----SQIV-FMAPTKPLVSQQVK 326
Query: 77 ----------------TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
T D R ++ ++FF+TP+ + DL T +A ++
Sbjct: 327 ACFEIAGIPRSSTTMLTGDQSPALRAEEWAEKRVFFMTPQTVENDLKTGIADPKKIALIV 386
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H T N T + + ++ N + A + P + V + ++ +L I ++ +
Sbjct: 387 VDEAHRATGNYAYTKVVQFLRRFNESFRVLALTATPGSSVEA---VQEVIDNLEIAEVEI 443
Query: 181 WPRFQVNVSEELER 194
+++ E + R
Sbjct: 444 RTEDSIDIKEYVHR 457
>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=MPH1 PE=3 SV=1
Length = 1134
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 21 LVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE--- 75
LV L +GL + A+++L + ++ ++ + L SQ + A + S+
Sbjct: 204 LVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLASQQVQACLGIAGIPRSQATL 263
Query: 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF 135
+T + P R + S ++FF+TP+ L+ DL ++ L++ H T +
Sbjct: 264 LTGETPPVLRQGEWESKRLFFMTPQTLMNDLSKGYADPKSIVLLVVDEAHRATGDYAYVK 323
Query: 136 ICRIIKSLNREAYIRAFSDKPTAMVSG 162
+ I+ ++ I A + P + V G
Sbjct: 324 VVEFIRRFSKSIRILALTATPGSTVEG 350
>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=MPH1 PE=3 SV=1
Length = 1012
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 33/195 (16%)
Query: 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61
V E+ +I+ + L + L + +G+ IAS ++L+ S N K
Sbjct: 87 VREYQFNIVQKSLYQ--NTLCAIPTGMG-KTFIASTVMLN--------FFRWSKNGK--- 132
Query: 62 IHYLAPNAPLLPSEITA----------------DLPANHRHTLYSSGQIFFVTPRILIVD 105
I + AP PL+ +I A D +R +++ ++FF TP+++ D
Sbjct: 133 IIFTAPTRPLVAQQIKACLGITGIPHDQAAILLDKSRKNREDIWTQKRVFFTTPQVIEND 192
Query: 106 LLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAK 165
L L ++ L+ H T + T + + I N I A + P + A
Sbjct: 193 LKRGVLNPKDIICLVFDEAHRATGSYAYTNVVKFIDRFNSSYRILALTATPGTDI---AS 249
Query: 166 TERIMKSLFIRKLHL 180
+ ++ +L I + +
Sbjct: 250 VQEVVNNLNISNIEI 264
>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=mph-1 PE=3 SV=1
Length = 1168
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 18 NGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75
N LV L +GL + A+++L + + ++ + L SQ + A + S+
Sbjct: 169 NNTLVALPTGLGKTFIAATIMLNYIRWTKTAKAVFVAPTKPLASQQVQACLSIAGIPRSQ 228
Query: 76 ---ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENST 132
+T + P R +++ ++FF+TP+ L+ DL ++ L+I H T +
Sbjct: 229 ATLLTGETPPVLREDEWATKRLFFMTPQTLMNDLSKGYADPKSIVLLVIDEAHRATGDYA 288
Query: 133 ETFICRIIKSLNREAYIRAFSDKPTAMVSG 162
+ ++ ++ I A + P + + G
Sbjct: 289 YVKVVEFLRRFSKSFRILALTATPGSSLEG 318
>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=mph1 PE=3 SV=1
Length = 1119
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 59 SQIIHYLAPNAPLLPSEITA-----DLPANHRHTL------------YSSGQIFFVTPRI 101
SQII ++AP PL+ +I+A +P + L + + ++FF+TP+
Sbjct: 350 SQII-FVAPTKPLVSQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQT 408
Query: 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP----- 156
LI DL + + L++ H T + + IK N+ + A + P
Sbjct: 409 LINDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFIKRYNKSFRVLALTATPGSTVE 468
Query: 157 --TAMVSGF--AKTE-RIMKSLFIRK 177
A++ G AK E R +SL IR+
Sbjct: 469 SVQAVIDGLDIAKVEIRTEQSLDIRE 494
>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase mph1 OS=Botryotinia fuckeliana (strain
B05.10) GN=mph1 PE=3 SV=2
Length = 1229
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 18 NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEI- 76
N LV L +GL IA+ ++L+ + N SQI+ ++AP PL+ ++
Sbjct: 285 NNLLVALPTGLGK-TFIAATIMLN--------FFRWTKN--SQIV-FMAPTKPLVSQQVK 332
Query: 77 ----------------TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120
T D R + ++FF+TP+ + DL T +A L+
Sbjct: 333 ACFEIAGIPRSSTTMLTGDQTPALRAEEWDEKRVFFMTPQTVENDLKTGIADPKRIALLV 392
Query: 121 ILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180
+ H T T + ++ N+ + A + P + V + ++ +L I ++ +
Sbjct: 393 VDEAHRATGKYAYTKVVEFLRRFNKSFRVLALTATPGSTVEAV---QEVIDNLEIAEVEI 449
Query: 181 WPRFQVNVSEELER 194
+++ E + R
Sbjct: 450 RTEESIDIKEYVHR 463
>sp|Q57878|ATGT_METJA tRNA-guanine(15) transglycosylase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=tgtA PE=1 SV=2
Length = 655
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 226 KEMRKTNKVDVEDLTVENGLFKSFDEILRRQL----DPIWHILGKKTK---QLVSDLKTL 278
KE+ NK + E L E+ L+ +F+EI R + +W ++ ++ + +L+ + +
Sbjct: 292 KELASLNKKERERLLAEHNLYVTFEEINRIKQAIRDGSLWELVEERVRCHPKLLEAYRVV 351
Query: 279 RKLLDYLVRYDAVT 292
RK +DY+ ++D VT
Sbjct: 352 RKYIDYIEKFDPVT 365
>sp|Q1MQ72|GLMU_LAWIP Bifunctional protein GlmU OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=glmU PE=3 SV=1
Length = 457
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 187 NVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNK------VDVEDLT 240
++ E + EP + D V ++ G+ LEV+D CL ++ NK D+ +L
Sbjct: 156 SIIEAKDIEPSLQHDTTVEVN---AGLYYFSLEVVDKCLPMIKNENKSQEYYFTDIIELA 212
Query: 241 VENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRK 280
VENG D I + WH LG T + +S ++++++
Sbjct: 213 VENGYL--VDSI---YFEEDWHFLGVNTPKDLSYVESIQQ 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,796,089
Number of Sequences: 539616
Number of extensions: 11624320
Number of successful extensions: 41583
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 41248
Number of HSP's gapped (non-prelim): 428
length of query: 715
length of database: 191,569,459
effective HSP length: 125
effective length of query: 590
effective length of database: 124,117,459
effective search space: 73229300810
effective search space used: 73229300810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)